BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020976
         (319 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 487

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/314 (64%), Positives = 262/314 (83%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+PC  TFNIM+NGLCKN +T NAL +FR L++HGFVP+L+TYNILI GLCK  RLR AR
Sbjct: 173 LSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRRLRAAR 232

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKEL  SG+ PNAITYTT+MK CFR+R++K GLEIL  M  KGYTFDGF YCTV+   
Sbjct: 233 SMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVGVL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K GRL+EAT+YM QM+ +G++ D+ SYNTLINLYCK+G LEAAY LLDE+EK+G +CD+
Sbjct: 293 IKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEIEKEGLQCDE 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YTHTILI+ +CKAGNI GAR H+++MN +GFDS L A NC+VD L K+G+IDHA+ +FES
Sbjct: 353 YTHTILINWMCKAGNILGARRHMQHMNMMGFDSCLVALNCMVDGLCKNGQIDHAVKLFES 412

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M+++DSFTYSS+VHNLCK  R   ASKLLLSCL+SG++IL SAQ+ V+ GLR+SG ++EA
Sbjct: 413 MKMRDSFTYSSLVHNLCKNGRFHRASKLLLSCLRSGMKILPSAQRVVISGLRYSGFQKEA 472

Query: 306 KKIQSKIRMAKISH 319
           +K++SKI++A++ H
Sbjct: 473 RKLKSKIKLARMLH 486



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 4/277 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI +  LCK +  + A  +     + G +P++VTYN LI    +      A  +L 
Sbjct: 37  TRLLNISIASLCKAKELNKAESVIIDGIRLGVLPDVVTYNTLIDAYSRFVSFNAAYSLLN 96

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++  +P+ +TY +++    RN      L +   M   G   D + Y T++  F K+G
Sbjct: 97  RMREASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFFKLG 156

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           + +EA + + Q+   G+     ++N +IN  CK G    A +L   +++ GF     T+ 
Sbjct: 157 KAEEANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQLITYN 216

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           ILI+GLCK   ++ AR  L+ +   G+  N   Y  ++    +  +    + + + M  K
Sbjct: 217 ILINGLCKDRRLRAARSMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEILQEMIDK 276

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
               D F Y ++V  L K  RL  A++ +   +K+G+
Sbjct: 277 GYTFDGFAYCTVVGVLIKTGRLEEATEYMRQMIKNGI 313


>gi|225454807|ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Vitis vinifera]
          Length = 457

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/319 (63%), Positives = 256/319 (80%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  +L P ++TFNIM+NGLC N YT  AL ++R LQ+ GFVPELVTYNILI GLCK+ +
Sbjct: 138 IILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRK 197

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR IL+ELG+SG+ P+AITYTT+MKCCFR+R+++ G EI S MK KGY FD F YC 
Sbjct: 198 LNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCA 257

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VIAA  K GRL+EA D MEQM    + LDIVSYNT++NLYC+ GKLEA Y LLDE+E+ G
Sbjct: 258 VIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHG 317

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            ECD+YTHTILIDGLCKAGN++GA  HL+ M K+GFDS L A NC++D L K G++DHAI
Sbjct: 318 LECDEYTHTILIDGLCKAGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAI 377

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +F SMEVKDSFTYSSMVHNLCKA+R   AS+LLL+CL+ G++IL++ Q++V+DGL +SG
Sbjct: 378 KMFASMEVKDSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDGLCYSG 437

Query: 301 CRREAKKIQSKIRMAKISH 319
              EA++++SKIR+A+I H
Sbjct: 438 YTSEARRLKSKIRLARILH 456



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 130/277 (46%), Gaps = 4/277 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI +  LCK    + A  +     + G +P++VTYN L+    +   +  A  ++ 
Sbjct: 7   TKLLNICIASLCKVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIH 66

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G +P+ ITY +++    +       L++   M R G   D + Y +++  F K+G
Sbjct: 67  RMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLG 126

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +  EA    + ++   +     ++N +IN  C  G    A  L   +++QGF  +  T+ 
Sbjct: 127 KPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYN 186

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           ILI+GLCK+  +  AR  L  + + G   +   Y  ++    +  + +    +F  M+ K
Sbjct: 187 ILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSK 246

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
               D+F+Y +++  L K  RL  A+ ++    +S +
Sbjct: 247 GYAFDAFSYCAVIAALTKTGRLEEANDIMEQMARSDI 283



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 146/330 (44%), Gaps = 39/330 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L+   +    D A  +   +++ G  P+++TYN LI    K   L  + 
Sbjct: 38  LLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSL 97

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFR-------NRKYK--------------------- 97
            + +E+  +G  P+  +Y ++M C F+       NR ++                     
Sbjct: 98  DLFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGL 157

Query: 98  -------LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                    L +   ++R+G+  +   Y  +I    K  +L  A   + ++   G   D 
Sbjct: 158 CNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDA 217

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++Y T++    +  + E  + +  EM+ +G+  D +++  +I  L K G ++ A   +E 
Sbjct: 218 ITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQ 277

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M +   D ++ +YN +++   ++GK++    + + +E      D +T++ ++  LCKA  
Sbjct: 278 MARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGN 337

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +  A + L +  K G      AQ  V+DGL
Sbjct: 338 VEGALRHLKNMTKMGFDSTLVAQNCVIDGL 367


>gi|297737331|emb|CBI26532.3| unnamed protein product [Vitis vinifera]
          Length = 441

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/319 (63%), Positives = 256/319 (80%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  +L P ++TFNIM+NGLC N YT  AL ++R LQ+ GFVPELVTYNILI GLCK+ +
Sbjct: 122 IILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRK 181

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR IL+ELG+SG+ P+AITYTT+MKCCFR+R+++ G EI S MK KGY FD F YC 
Sbjct: 182 LNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCA 241

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VIAA  K GRL+EA D MEQM    + LDIVSYNT++NLYC+ GKLEA Y LLDE+E+ G
Sbjct: 242 VIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHG 301

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            ECD+YTHTILIDGLCKAGN++GA  HL+ M K+GFDS L A NC++D L K G++DHAI
Sbjct: 302 LECDEYTHTILIDGLCKAGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAI 361

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +F SMEVKDSFTYSSMVHNLCKA+R   AS+LLL+CL+ G++IL++ Q++V+DGL +SG
Sbjct: 362 KMFASMEVKDSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDGLCYSG 421

Query: 301 CRREAKKIQSKIRMAKISH 319
              EA++++SKIR+A+I H
Sbjct: 422 YTSEARRLKSKIRLARILH 440



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 140/314 (44%), Gaps = 23/314 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L+   +    D A  +   +++ G  P+++TYN LI    K   L  + 
Sbjct: 38  LLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSL 97

Query: 66  WILKELGDSGHAPNAITYTTIMKCCF-------------------RNRKYKLGLEILSAM 106
            + +E+  +G  P+  +Y ++M                        N      L +   +
Sbjct: 98  DLFEEMLRTGIRPDVWSYNSLMHYIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYL 157

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           +R+G+  +   Y  +I    K  +L  A   + ++   G   D ++Y T++    +  + 
Sbjct: 158 QRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCCFRSRQF 217

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           E  + +  EM+ +G+  D +++  +I  L K G ++ A   +E M +   D ++ +YN +
Sbjct: 218 EQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTV 277

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++   ++GK++    + + +E      D +T++ ++  LCKA  +  A + L +  K G 
Sbjct: 278 MNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGNVEGALRHLKNMTKMGF 337

Query: 283 RILKSAQKAVVDGL 296
                AQ  V+DGL
Sbjct: 338 DSTLVAQNCVIDGL 351



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 23/257 (8%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           NI I  LCK G+L  A  ++ +    G  P+ +TY T++    R         ++  MK 
Sbjct: 11  NICIASLCKVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKE 70

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL------------ 156
            G + D   Y ++IAA  K   L  + D  E+M+  G++ D+ SYN+L            
Sbjct: 71  AGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHYIILTNLLPS 130

Query: 157 -------INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
                  IN  C  G    A  L   +++QGF  +  T+ ILI+GLCK+  +  AR  L 
Sbjct: 131 SSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILR 190

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            + + G   +   Y  ++    +  + +    +F  M+ K    D+F+Y +++  L K  
Sbjct: 191 ELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTG 250

Query: 266 RLPSASKLLLSCLKSGV 282
           RL  A+ ++    +S +
Sbjct: 251 RLEEANDIMEQMARSDI 267


>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Glycine max]
          Length = 461

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/307 (61%), Positives = 246/307 (80%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           AT+NIM+NGLCKN Y  NAL +FR LQ+HGFVP+++TYN LI GLCKA RL+ AR +LKE
Sbjct: 153 ATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKE 212

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            G++G+ PNA+TYTT+M CCFR R ++ GLEILS M+  G+TFDGF YCTVIAA +K GR
Sbjct: 213 FGETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGR 272

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA + +E MV+ GV+ D+VSYNTLINLYC++G+L+ A  LLDE+E +G ECD+YTHTI
Sbjct: 273 MQEAEEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTI 332

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           ++DGLCKAGN  GA+ HL YMN +GF SNL A+NC +D LGK G IDHA+ +FE MEVKD
Sbjct: 333 IVDGLCKAGNFDGAQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEVKD 392

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           SFTY+ +VHNLC+A+R   ASK+L+SCLK G ++L++ Q+AV+ GLR  G   EA+K++ 
Sbjct: 393 SFTYTIVVHNLCRARRFLCASKVLVSCLKCGYQVLRATQRAVIVGLRSIGYANEARKVKL 452

Query: 311 KIRMAKI 317
            IR+A+ 
Sbjct: 453 TIRLAQF 459



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 131/278 (47%), Gaps = 5/278 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI ++ LCK +   NA        + G +P++VTYN LI   C+   L  A  +L 
Sbjct: 13  TKLLNITVSSLCKAKQIPNAETAIVDGIRLGVLPDVVTYNTLIDAYCRFATLDVAYSVLA 72

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + D+G  P+ +++ T++    R   +   L++   M ++G   D + +  ++    ++G
Sbjct: 73  RMHDAGIPPDVVSFNTLISGAVRKSLFSKSLDLFDEMLKRGINPDAWSHNILMNCLFQLG 132

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +  EA    +++V    ++   +YN +IN  CK G +  A  L   +++ GF     T+ 
Sbjct: 133 KPDEANRVFKEIVLRD-EVHPATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYN 191

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            LI+GLCKA  +K AR  L+   + G + N   Y  ++    +    +  + +   M   
Sbjct: 192 ALINGLCKARRLKDARRVLKEFGETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSL 251

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
               D F Y +++  + K  R+  A +++   + SGVR
Sbjct: 252 GFTFDGFAYCTVIAAMIKTGRMQEAEEIVEMMVSSGVR 289



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 142/333 (42%), Gaps = 42/333 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++  C+    D A  +   +   G  P++V++N LI G  +      +  +
Sbjct: 46  PDVVTYNTLIDAYCRFATLDVAYSVLARMHDAGIPPDVVSFNTLISGAVRKSLFSKSLDL 105

Query: 68  LKELGDSGHAPNAITYTTIMKCCFR-------NRKYKL---------------------- 98
             E+   G  P+A ++  +M C F+       NR +K                       
Sbjct: 106 FDEMLKRGINPDAWSHNILMNCLFQLGKPDEANRVFKEIVLRDEVHPATYNIMINGLCKN 165

Query: 99  -----GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
                 L +   ++R G+      Y  +I    K  RLK+A   +++    G + + V+Y
Sbjct: 166 GYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKEFGETGNEPNAVTY 225

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
            T++    +    E    +L EM   GF  D + +  +I  + K G ++ A   +E M  
Sbjct: 226 TTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAEEIVEMMVS 285

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G   +L +YN +++   + G++D A+ + + +E +    D +T++ +V  LCKA     
Sbjct: 286 SGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKAGNFDG 345

Query: 270 ASKLL--LSCLKSGVRILKSAQKAVVDGLRHSG 300
           A + L  ++ L  G  ++  A    +DGL  +G
Sbjct: 346 AQRHLNYMNSLGFGSNLV--AFNCFLDGLGKAG 376



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 39/228 (17%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL-------------- 51
             P   T+N ++NGLCK R   +A R+ +   + G  P  VTY  +              
Sbjct: 183 FVPQVLTYNALINGLCKARRLKDARRVLKEFGETGNEPNAVTYTTVMTCCFRCRLFEEGL 242

Query: 52  ---------------------IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                                I  + K GR++ A  I++ +  SG  P+ ++Y T++   
Sbjct: 243 EILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAEEIVEMMVSSGVRPDLVSYNTLINLY 302

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            R  +    L +L  ++ +G   D + +  ++    K G    A  ++  M + G   ++
Sbjct: 303 CRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKAGNFDGAQRHLNYMNSLGFGSNL 362

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           V++N  ++   K G ++ A  L + ME +    D +T+TI++  LC+A
Sbjct: 363 VAFNCFLDGLGKAGHIDHALRLFEVMEVK----DSFTYTIVVHNLCRA 406



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 7/177 (3%)

Query: 139 EQMVTDGVQL----DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
           E  + DG++L    D+V+YNTLI+ YC+   L+ AY +L  M   G   D  +   LI G
Sbjct: 33  ETAIVDGIRLGVLPDVVTYNTLIDAYCRFATLDVAYSVLARMHDAGIPPDVVSFNTLISG 92

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-- 252
             +      +    + M K G + +  ++N +++ L + GK D A  VF+ + ++D    
Sbjct: 93  AVRKSLFSKSLDLFDEMLKRGINPDAWSHNILMNCLFQLGKPDEANRVFKEIVLRDEVHP 152

Query: 253 -TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            TY+ M++ LCK   + +A  L  +  + G         A+++GL  +   ++A+++
Sbjct: 153 ATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRV 209



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 4/148 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   ++N ++N  C+    D+ALR+   ++  G   +  T+ I++ GLCKAG 
Sbjct: 283 MVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKAGN 342

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+  L  +   G   N + +   +    +       L +   M+ K    D F Y  
Sbjct: 343 FDGAQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEVK----DSFTYTI 398

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           V+    +  R   A+  +   +  G Q+
Sbjct: 399 VVHNLCRARRFLCASKVLVSCLKCGYQV 426


>gi|147832566|emb|CAN63846.1| hypothetical protein VITISV_010038 [Vitis vinifera]
          Length = 457

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/295 (64%), Positives = 237/295 (80%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  +L P ++TFNIM+NGLC N YT  AL ++R LQ+ GFVPELVTYNILI GLCK+ +
Sbjct: 138 IILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRK 197

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR IL+ELG+SG+ P+AITYTT+MKCCFR+R+++ G EI S MK KGY FD F YC 
Sbjct: 198 LNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCA 257

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VIAA  K GRL+EA D MEQM    + LDIVSYNT++NLYC+ GKLEA Y LLDE+E+ G
Sbjct: 258 VIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHG 317

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            ECD+YTHTILIDGLCKAGN++GA  HL+ M K+GFDS L A NC++D L K G++DHAI
Sbjct: 318 LECDEYTHTILIDGLCKAGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAI 377

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +F SMEVKDSFTYSSMVHNLCKA+R   AS+LLL+CL+ G++IL++ Q++V+DG
Sbjct: 378 KMFASMEVKDSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDG 432



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 130/277 (46%), Gaps = 4/277 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI +  LCK    + A  +     + G +P++VTYN L+    +   +  A  ++ 
Sbjct: 7   TKLLNICIASLCKVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIH 66

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G +P+ ITY +++    +       L++   M R G   D + Y +++  F K+G
Sbjct: 67  RMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLG 126

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +  EA    + ++   +     ++N +IN  C  G    A  L   +++QGF  +  T+ 
Sbjct: 127 KPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYN 186

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           ILI+GLCK+  +  AR  L  + + G   +   Y  ++    +  + +    +F  M+ K
Sbjct: 187 ILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSK 246

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
               D+F+Y +++  L K  RL  A+ ++    +S +
Sbjct: 247 GYAFDAFSYCAVIAALTKTGRLEEANDIMEQMARSDI 283



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 146/330 (44%), Gaps = 39/330 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L+   +    D A  +   +++ G  P+++TYN LI    K   L  + 
Sbjct: 38  LLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSL 97

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFR-------NRKYK--------------------- 97
            + +E+  +G  P+  +Y ++M C F+       NR ++                     
Sbjct: 98  DLFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGL 157

Query: 98  -------LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                    L +   ++R+G+  +   Y  +I    K  +L  A   + ++   G   D 
Sbjct: 158 CNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDA 217

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++Y T++    +  + E  + +  EM+ +G+  D +++  +I  L K G ++ A   +E 
Sbjct: 218 ITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQ 277

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M +   D ++ +YN +++   ++GK++    + + +E      D +T++ ++  LCKA  
Sbjct: 278 MARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGN 337

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +  A + L +  K G      AQ  V+DGL
Sbjct: 338 VEGALRHLKNMTKMGFDSTLVAQNCVIDGL 367



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 125/273 (45%), Gaps = 4/273 (1%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           NI I  LCK G+L  A  ++ +    G  P+ +TY T++    R         ++  MK 
Sbjct: 11  NICIASLCKVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKE 70

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G + D   Y ++IAA  K   L  + D  E+M+  G++ D+ SYN+L++ + K GK + 
Sbjct: 71  AGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDE 130

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  +  ++          T  I+I+GLC  G    A     Y+ + GF   L  YN +++
Sbjct: 131 ANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILIN 190

Query: 229 RLGKDGKIDHAINVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            L K  K++ A  +     ES  V D+ TY++++    ++++     ++       G   
Sbjct: 191 GLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAF 250

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
              +  AV+  L  +G   EA  I  ++  + I
Sbjct: 251 DAFSYCAVIAALTKTGRLEEANDIMEQMARSDI 283


>gi|224089585|ref|XP_002308767.1| predicted protein [Populus trichocarpa]
 gi|222854743|gb|EEE92290.1| predicted protein [Populus trichocarpa]
          Length = 454

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/310 (61%), Positives = 248/310 (80%), Gaps = 3/310 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P  AT+N MLNGLCK  + +NAL +FR L++HGFVP LVTYNILI GLCKA +L+TAR
Sbjct: 143 LSPSQATYNTMLNGLCKCGFVENALMLFRKLKRHGFVPSLVTYNILINGLCKAWKLKTAR 202

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+LKELG SG  PN ITYTT+M+CCFR+R+++ GLEI   M  KGYTFDGF YCTV+ A 
Sbjct: 203 WMLKELGASGLVPNVITYTTVMRCCFRSRRFEQGLEIFEEMIDKGYTFDGFAYCTVVGAL 262

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK  R++EA+ YME+MV   + LD+ SYNTLINLYCK GKLE A+ +LD+MEK+GFE D+
Sbjct: 263 VKTCRIEEASHYMERMVNTDIGLDMASYNTLINLYCKGGKLEMAHGVLDKMEKEGFERDE 322

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+TIL++GLC+ G+++GA   +EYMN  GF+SNL A N +VDR  K  +ID+A  +F+S
Sbjct: 323 YTNTILMNGLCEEGDVEGA---MEYMNVAGFNSNLVALNTMVDRWCKADQIDYAFKIFDS 379

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M+++DSFTYSS++HNLCK  R   ASKLLLSC++S  RIL SA++AV D LRHSG +REA
Sbjct: 380 MDMRDSFTYSSLIHNLCKVGRFRCASKLLLSCVRSRTRILPSAKRAVFDCLRHSGHQREA 439

Query: 306 KKIQSKIRMA 315
           K+++S+I++A
Sbjct: 440 KRLKSEIKLA 449



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 125/266 (46%), Gaps = 4/266 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI +   CK ++   A  +     + G +P++VTYN LI    +      A  +L 
Sbjct: 7   TRFLNICIASFCKAKHLQRAETVIIDGVRLGVLPDVVTYNTLINAYSRFVSFDAAYSVLD 66

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++   P+ +TY +++    R+      +++   M   G   D + Y T++  F K+ 
Sbjct: 67  RMKEASIKPDIVTYNSLIAGAMRHCLLSNCMDLFEEMLELGIKPDIWSYNTLMHCFFKLE 126

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R  +A      ++   +     +YNT++N  CK G +E A +L  ++++ GF     T+ 
Sbjct: 127 RPDDAYRVFTDIILCYLSPSQATYNTMLNGLCKCGFVENALMLFRKLKRHGFVPSLVTYN 186

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           ILI+GLCKA  +K AR  L+ +   G   N+  Y  ++    +  + +  + +FE M  K
Sbjct: 187 ILINGLCKAWKLKTARWMLKELGASGLVPNVITYTTVMRCCFRSRRFEQGLEIFEEMIDK 246

Query: 250 ----DSFTYSSMVHNLCKAKRLPSAS 271
               D F Y ++V  L K  R+  AS
Sbjct: 247 GYTFDGFAYCTVVGALVKTCRIEEAS 272



 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 7/135 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+    A++N ++N  CK    + A  +   ++K GF  +  T  IL+ GLC+ G 
Sbjct: 278 MVNTDIGLDMASYNTLINLYCKGGKLEMAHGVLDKMEKEGFERDEYTNTILMNGLCEEGD 337

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   ++ +  +G   N +   T++    +  +     +I  +M  +    D F Y +
Sbjct: 338 VEGA---MEYMNVAGFNSNLVALNTMVDRWCKADQIDYAFKIFDSMDMR----DSFTYSS 390

Query: 121 VIAAFVKIGRLKEAT 135
           +I    K+GR + A+
Sbjct: 391 LIHNLCKVGRFRCAS 405


>gi|449467965|ref|XP_004151692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Cucumis sativus]
 gi|449468117|ref|XP_004151768.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Cucumis sativus]
 gi|449532400|ref|XP_004173169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Cucumis sativus]
          Length = 456

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 241/316 (76%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  DL+P   TFN M+NGLCK+ YT NA+ +FR LQ+HGF+P+LVTYNILI GLCK  R
Sbjct: 138 IILKDLSPHPVTFNTMINGLCKHGYTSNAIMLFRNLQRHGFIPQLVTYNILINGLCKVDR 197

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR A  +L E  DSG  PNA+TYTT+MK CFR+R+Y+ G EI S MK KGY FDGF YCT
Sbjct: 198 LRAAIRMLNEAMDSGLEPNAVTYTTLMKSCFRSRQYERGFEIFSKMKNKGYAFDGFAYCT 257

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V  AF+K+GR +EA   MEQM+ + V +DI  YNT INLYCKEGKLEAAY L DE+E +G
Sbjct: 258 VSGAFLKLGRFEEAKFCMEQMIKNDVGIDITFYNTFINLYCKEGKLEAAYKLFDEIEPRG 317

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            ECD YTH+I+ +GLC+ GNI+GA  HL  +   GF SNL A NC++DRL K G+ID AI
Sbjct: 318 LECDVYTHSIITNGLCRVGNIEGAMQHLNCVYTTGFASNLVALNCLIDRLCKAGQIDRAI 377

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +FESME +DSFTY+S+VHNLCKA+R   ASKLL+SC + G+++LK+ ++AV+DGL  SG
Sbjct: 378 RLFESMETRDSFTYTSLVHNLCKARRFRCASKLLISCSRDGMKVLKATRRAVIDGLCSSG 437

Query: 301 CRREAKKIQSKIRMAK 316
              EA+K++ K+R+A+
Sbjct: 438 FTSEARKLKFKLRLAR 453



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 129/279 (46%), Gaps = 4/279 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI +   CK++    A  +     + G +P++VTYN LI G C+   +  A  +L 
Sbjct: 7   TKFLNICVASFCKSQQMQKAEAVIIDGIRIGVLPDVVTYNTLIDGYCRFSGMDAAYSVLY 66

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G +P+ ITY +++    RN   +  L++   M + G T D + Y T++  F  +G
Sbjct: 67  RMREAGISPDVITYNSLIAGATRNFSLEQSLDLFEEMLQSGITPDIWSYNTLMHCFFILG 126

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +  EA    + ++   +    V++NT+IN  CK G    A +L   +++ GF     T+ 
Sbjct: 127 KPDEAYRVFKDIILKDLSPHPVTFNTMINGLCKHGYTSNAIMLFRNLQRHGFIPQLVTYN 186

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           ILI+GLCK   ++ A   L      G + N   Y  ++    +  + +    +F  M+ K
Sbjct: 187 ILINGLCKVDRLRAAIRMLNEAMDSGLEPNAVTYTTLMKSCFRSRQYERGFEIFSKMKNK 246

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
               D F Y ++     K  R   A   +   +K+ V I
Sbjct: 247 GYAFDGFAYCTVSGAFLKLGRFEEAKFCMEQMIKNDVGI 285


>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 457

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/316 (56%), Positives = 247/316 (78%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P  A++N+M+NGLCKN Y +NAL +FR L++ GFVPE++TYN +I GLCKA RL  
Sbjct: 142 GEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLAD 201

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           AR +L E  D G  PNAITYTT+MKCCFR  + + GLEILS M+RKG+TFDGF YCTV+A
Sbjct: 202 ARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVA 261

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A VK GR++EA +  E+M+++G+  D+ SYNT+INL+C++G+ + A  L+DE+EKQG +C
Sbjct: 262 ALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKC 321

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D+YTHTI+I GLCK GN +GA  HL+YMN +GF  NL A+N I+D LGK G ID A+ VF
Sbjct: 322 DQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVF 381

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +SMEVKDSFTY+S++HNLC+AK+   ASKLL++ ++ G +IL++ Q+AV+DGL  SG   
Sbjct: 382 DSMEVKDSFTYTSLLHNLCRAKKFRIASKLLVASIEDGFQILRATQRAVIDGLTTSGLVY 441

Query: 304 EAKKIQSKIRMAKISH 319
           EA+K++ KI+ A++ H
Sbjct: 442 EARKVKLKIQRARLVH 457



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 131/278 (47%), Gaps = 5/278 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI ++ +CK+     A  +     K G  P+++TYN LI G C+   +  A  IL 
Sbjct: 7   TKFMNITISTMCKSNQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYNILN 66

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  P+ ++Y ++     R    +  L++   M + G   D + Y  ++  + ++G
Sbjct: 67  RMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFRLG 126

Query: 130 RLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           + +EA      +   G +   + SYN +IN  CK G +  A +L   + ++GF  +  T+
Sbjct: 127 KPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTY 186

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
             +I+GLCKA  +  AR  L      GF+ N   Y  ++    + G+++  + +   M  
Sbjct: 187 NAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRR 246

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           K    D F Y ++V  L K  R+  A ++    + +G+
Sbjct: 247 KGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGL 284



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 159/380 (41%), Gaps = 67/380 (17%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G C+    D A  +   +++ G  P++V+YN L  G  +   L+ + 
Sbjct: 38  LNPDIITYNTLIDGYCRFVGIDAAYNILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSL 97

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFR--------------------------------- 92
            +  E+  SG  P+  +Y  +M C FR                                 
Sbjct: 98  DLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASYNVMING 157

Query: 93  ---NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
              N      L +   ++R+G+  +   Y  +I    K  RL +A   + +    G + +
Sbjct: 158 LCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPN 217

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
            ++Y T++    + G+LE    +L EM ++GF  D + +  ++  L K G I+ A    E
Sbjct: 218 AITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAE 277

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            M   G   +L +YN +++   + G+ D A+ + + +E +    D +T++ ++H LCK  
Sbjct: 278 KMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDG 337

Query: 266 RLPSASKLL------------------LSCL-KSG-----VRILKSAQ---KAVVDGLRH 298
               A K L                  L CL K+G     V++  S +         L H
Sbjct: 338 NFEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSMEVKDSFTYTSLLH 397

Query: 299 SGCRREAKKIQSKIRMAKIS 318
           + CR +  +I SK+ +A I 
Sbjct: 398 NLCRAKKFRIASKLLVASIE 417



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P  A++N M+N  C+    D ALR+   ++K G   +  T+ I+I GLCK G 
Sbjct: 279 MMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGN 338

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A   L  +   G   N + + +I+ C  +       +++  +M+ K    D F Y +
Sbjct: 339 FEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSMEVK----DSFTYTS 394

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           ++    +  + + A+  +   + DG Q+
Sbjct: 395 LLHNLCRAKKFRIASKLLVASIEDGFQI 422


>gi|449451938|ref|XP_004143717.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Cucumis sativus]
          Length = 460

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 159/323 (49%), Positives = 221/323 (68%), Gaps = 8/323 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            I  D +P  ATF++M+ G C   YT NA+ +FR LQ HG VP+ VTY+IL+ GLCKA R
Sbjct: 138 FILKDHSPNPATFDVMIFGFCSCGYTSNAITLFRNLQSHGLVPKFVTYDILLTGLCKAAR 197

Query: 61  LRT-------ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
           L         A  +  E  DSG  P++ TY  +MKCCF+ R+Y+ G EI   MK KG  F
Sbjct: 198 LNVSVSMFNEAMSMFNEAIDSGFEPDSTTYIALMKCCFKFREYQHGFEIFFEMKNKGLAF 257

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           +GFGY T I A +++GRL+EA  +M +M+ +GV  ++V YNT++NLYCK GKLEAA+ +L
Sbjct: 258 NGFGYYTAIGALLRLGRLEEAKFFMVEMIKNGVVFNLVFYNTVVNLYCKHGKLEAAHKML 317

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGK 232
           D++E +G +C+ YTH I+ DGLCK GN +GAR HL Y+   GF +SN+ A +C++DRL K
Sbjct: 318 DKIESRGLQCNDYTHAIITDGLCKVGNFEGARRHLNYIYPTGFTNSNVVASSCLIDRLCK 377

Query: 233 DGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
            G+ID A+ +FE ME KD + Y+S++HNLCKA+R   ASKLLL CL+SG+ + +S Q AV
Sbjct: 378 AGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAV 437

Query: 293 VDGLRHSGCRREAKKIQSKIRMA 315
           + GL   G   EA+K++  I ++
Sbjct: 438 IFGLCSFGFTSEARKLKPFIHLS 460



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 18/319 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT C A+F       CK+     A    +   + G VP+++TYNILI G C+   +  A 
Sbjct: 10  LTICVASF-------CKSHQFQKAEIAIKDAIRLGVVPDILTYNILINGYCQFSDMDAAY 62

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++ D+G  PN   YT++M    RN   +  L +   M + G T D + Y T+   F
Sbjct: 63  SVFHKMRDAGITPNVFIYTSLMAAASRNSSLEQCLNLFHEMLQLGITPDVWSYTTLTHCF 122

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K+G+  EA       +      +  +++ +I  +C  G    A  L   ++  G     
Sbjct: 123 LKVGKPDEANSIFLDFILKDHSPNPATFDVMIFGFCSCGYTSNAITLFRNLQSHGLVPKF 182

Query: 186 YTHTILIDGLCKAGNIK-GARLHLEYMNKI------GFDSNLEAYNCIVDRLGKDGKIDH 238
            T+ IL+ GLCKA  +     +  E M+        GF+ +   Y  ++    K  +  H
Sbjct: 183 VTYDILLTGLCKAARLNVSVSMFNEAMSMFNEAIDSGFEPDSTTYIALMKCCFKFREYQH 242

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
              +F  M+ K    + F Y + +  L +  RL  A   ++  +K+GV         VV+
Sbjct: 243 GFEIFFEMKNKGLAFNGFGYYTAIGALLRLGRLEEAKFFMVEMIKNGVVFNLVFYNTVVN 302

Query: 295 GLRHSGCRREAKKIQSKIR 313
                G    A K+  KI 
Sbjct: 303 LYCKHGKLEAAHKMLDKIE 321


>gi|68566156|sp|P0C043.1|PP318_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At4g17915
          Length = 463

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/314 (50%), Positives = 223/314 (71%), Gaps = 1/314 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N++L+ LCK  Y DNAL +F+ +Q   F PEL+TYNILI GLCK+ R+ TA+
Sbjct: 150 LNPGPDTYNVLLDALCKCGYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAK 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+L EL  SG+ PNA+TYTTI+K  F+ R+ + GL++   MKR+GYT+DG+ Y  V++A 
Sbjct: 209 WMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSAL 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K GR KEA +YM+++V  G + DIVSYNTL+NLY K+G L+A   LL E+E++G + D+
Sbjct: 269 IKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADE 328

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YTHTI+++GL + G  + A  H   M ++G   NL   NC+VD L K G +D A+  FES
Sbjct: 329 YTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFES 388

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           MEVKD +TY+S+VHNLCK  R   ASKLLLSC   G++I  SA++AV+ GLR SGC  EA
Sbjct: 389 MEVKDEYTYTSVVHNLCKDMRFVCASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEA 448

Query: 306 KKIQSKIRMAKISH 319
           +K ++++++  + +
Sbjct: 449 RKAKAEMKLTLVGN 462



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 133/279 (47%), Gaps = 6/279 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI ++ LCK R  + A  +     + G  P++VTYN LI G C+   +  A  + +
Sbjct: 13  TRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTR 72

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + D+G  P+  TY +++    R       L +   M   G   D + Y T++  + K+G
Sbjct: 73  RMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLG 132

Query: 130 RLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           + +EA   + + +   G+     +YN L++  CK G ++ A  L  EM+ + F+ +  T+
Sbjct: 133 KHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQSR-FKPELMTY 191

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            ILI+GLCK+  +  A+  L  + K G+  N   Y  I+    K  +I   + +F  M+ 
Sbjct: 192 NILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKR 251

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +    D + Y ++V  L K  R   A + +   ++ G R
Sbjct: 252 EGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRR 290



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 148/306 (48%), Gaps = 8/306 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++G C+    + A  + R ++  G  P++ TYN LI G  +   L    ++
Sbjct: 46  PDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYL 105

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL-SAMKRKGYTFDGFGYCTVIAAFV 126
             E+ + G  P+  +Y T+M C F+  K++    +L   ++  G       Y  ++ A  
Sbjct: 106 FDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALC 165

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G +  A +  ++M +   + ++++YN LIN  CK  ++  A  +L E++K G+  +  
Sbjct: 166 KCGYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAV 224

Query: 187 THTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           T+T ++    K   I +G +L LE M + G+  +  AY  +V  L K G+   A    + 
Sbjct: 225 TYTTILKLYFKTRRIRRGLQLFLE-MKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQE 283

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           +  K    D  +Y+++++   K   L +   LL    + G++  +     +V+GL  +G 
Sbjct: 284 LVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQ 343

Query: 302 RREAKK 307
            R A++
Sbjct: 344 TRRAEE 349


>gi|297800292|ref|XP_002868030.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313866|gb|EFH44289.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 463

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 157/314 (50%), Positives = 223/314 (71%), Gaps = 1/314 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T+N++L+ LCK  Y DNAL +F+ +Q   F PEL+TYNILI GLCK+ R+ TA+
Sbjct: 150 LSPGPDTYNVLLDALCKCGYIDNALELFKEMQSK-FKPELMTYNILINGLCKSRRVGTAK 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+L EL  SG+ PNA+TYTTI+K   + R+ + GL++   MKR+GYT+DG+ Y  V++A 
Sbjct: 209 WMLTELKRSGYTPNAVTYTTILKLYIKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSAL 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K GR KEA +YM+++V  G + DIVSYNTL+NLY K+G L+A   LL E+E++G + D+
Sbjct: 269 IKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERKGMKADE 328

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YTHTI+++GL + G  + A  H   M ++G   NL   NC+VD L K G +D A+  FES
Sbjct: 329 YTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFES 388

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           MEVKD +TY+S+VHNLCK  R   ASKLLLSC   G++I  SA++AV+ GLR SGC  EA
Sbjct: 389 MEVKDEYTYTSVVHNLCKDMRFVCASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEA 448

Query: 306 KKIQSKIRMAKISH 319
           +K ++K+++  + +
Sbjct: 449 RKAKAKMKLTLVGN 462



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 6/279 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI ++ LCK R  + A  +     + G  P++VTYN LI G C+   +     +  
Sbjct: 13  TRLLNICVDSLCKFRKLEKAETLIIDGIRLGVAPDVVTYNTLISGYCRFVGIEEGYAVTL 72

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + D+G  P+  TY +++    R       L +   M   G   D + Y T++  + K+G
Sbjct: 73  RMRDAGIRPDVATYNSLIAGAARRLMLDRVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLG 132

Query: 130 RLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           + +EA   + + +   G+     +YN L++  CK G ++ A  L  EM+ + F+ +  T+
Sbjct: 133 KHEEAFRVLYKDLQLAGLSPGPDTYNVLLDALCKCGYIDNALELFKEMQSK-FKPELMTY 191

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            ILI+GLCK+  +  A+  L  + + G+  N   Y  I+    K  +I   + +F  M+ 
Sbjct: 192 NILINGLCKSRRVGTAKWMLTELKRSGYTPNAVTYTTILKLYIKTRRIRRGLQLFLEMKR 251

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +    D + Y ++V  L K  R   A + +   ++ G R
Sbjct: 252 EGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRR 290


>gi|357159753|ref|XP_003578548.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Brachypodium distachyon]
          Length = 460

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 151/312 (48%), Positives = 213/312 (68%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TPCT T+N +L+GL K  +  NA RMFR LQ+ G    +VTYN +I GLC++G++  AR
Sbjct: 146 VTPCTTTYNTLLDGLFKAGHATNAYRMFRYLQRVGLPVGIVTYNTMINGLCRSGKVGYAR 205

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL+ELG + H PNA+TYTT+MKCCFR  ++  GLE   ++   G+  D F YCTVI+A 
Sbjct: 206 MILRELGRTEHTPNAVTYTTVMKCCFRYGRFDQGLETFLSLLEGGHIPDVFPYCTVISAL 265

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK GR++EA  Y E M+  G +LD   YNTLI+L C+EGKL+ A+ LL  ME+ G E D+
Sbjct: 266 VKKGRVEEANAYSELMIQSGSRLDTACYNTLIHLRCQEGKLDDAFELLSMMEEGGLESDE 325

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT +IL++GLCK G+I+ A   L YM     +SN+ AYNC+VD L K  ++D AI +   
Sbjct: 326 YTFSILVNGLCKLGHIEAAEKQLCYMEMRDMESNVVAYNCLVDALCKSDQVDAAIRLLHD 385

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M++KD FTY+S+VH LC+  R   ASK L  CL+ G  +L SA++AV+ GLR +G + + 
Sbjct: 386 MKLKDDFTYTSLVHGLCRVGRYHMASKFLRICLREGNNVLASAKRAVIAGLRSAGFKNDV 445

Query: 306 KKIQSKIRMAKI 317
           +K++S + MA++
Sbjct: 446 RKVRSALYMARL 457



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 132/308 (42%), Gaps = 39/308 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +L   C+    D    + R +++ G  P  VTYN LI    + G    A 
Sbjct: 41  MPPDVVTYNTLLAAHCRAAGLDAGFAVLRRMREAGVWPNAVTYNSLIVAASRVGLTMRAL 100

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  +G AP+A +Y  +M C FR+   +    + + M  KG T     Y T++   
Sbjct: 101 DLFDEMLRAGIAPDAWSYNVLMHCLFRSGHPEDAYRVFADMAEKGVTPCTTTYNTLLDGL 160

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
            K G    A      +   G+ + IV+YNT+IN  C+ GK+  A ++L E+ +       
Sbjct: 161 FKAGHATNAYRMFRYLQRVGLPVGIVTYNTMINGLCRSGKVGYARMILRELGRTEHTPNA 220

Query: 179 -----------------QGFEC-----------DKYTHTILIDGLCKAGNIKGARLHLEY 210
                            QG E            D + +  +I  L K G ++ A  + E 
Sbjct: 221 VTYTTVMKCCFRYGRFDQGLETFLSLLEGGHIPDVFPYCTVISALVKKGRVEEANAYSEL 280

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M + G   +   YN ++    ++GK+D A  +   ME      D +T+S +V+ LCK   
Sbjct: 281 MIQSGSRLDTACYNTLIHLRCQEGKLDDAFELLSMMEEGGLESDEYTFSILVNGLCKLGH 340

Query: 267 LPSASKLL 274
           + +A K L
Sbjct: 341 IEAAEKQL 348



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 126/279 (45%), Gaps = 4/279 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N+ L  LC++   + A  +       G  P++VTYN L+   C+A  L     +L+
Sbjct: 10  TRLMNVCLAALCRSGSLERAESVLIDAILLGMPPDVVTYNTLLAAHCRAAGLDAGFAVLR 69

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  PNA+TY +++    R       L++   M R G   D + Y  ++    + G
Sbjct: 70  RMREAGVWPNAVTYNSLIVAASRVGLTMRALDLFDEMLRAGIAPDAWSYNVLMHCLFRSG 129

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             ++A      M   GV     +YNTL++   K G    AY +   +++ G      T+ 
Sbjct: 130 HPEDAYRVFADMAEKGVTPCTTTYNTLLDGLFKAGHATNAYRMFRYLQRVGLPVGIVTYN 189

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
            +I+GLC++G +  AR+ L  + +     N   Y  ++    + G+ D  +  F S+   
Sbjct: 190 TMINGLCRSGKVGYARMILRELGRTEHTPNAVTYTTVMKCCFRYGRFDQGLETFLSLLEG 249

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             + D F Y +++  L K  R+  A+      ++SG R+
Sbjct: 250 GHIPDVFPYCTVISALVKKGRVEEANAYSELMIQSGSRL 288



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           QL     N  +   C+ G LE A  +L +    G   D  T+  L+   C+A  +     
Sbjct: 7   QLSTRLMNVCLAALCRSGSLERAESVLIDAILLGMPPDVVTYNTLLAAHCRAAGLDAGFA 66

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
            L  M + G   N   YN ++    + G    A+++F+ M       D+++Y+ ++H L 
Sbjct: 67  VLRRMREAGVWPNAVTYNSLIVAASRVGLTMRALDLFDEMLRAGIAPDAWSYNVLMHCLF 126

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           ++     A ++     + GV    +    ++DGL  +G
Sbjct: 127 RSGHPEDAYRVFADMAEKGVTPCTTTYNTLLDGLFKAG 164


>gi|293334951|ref|NP_001170632.1| uncharacterized protein LOC100384682 [Zea mays]
 gi|238006488|gb|ACR34279.1| unknown [Zea mays]
 gi|413925463|gb|AFW65395.1| hypothetical protein ZEAMMB73_565010 [Zea mays]
          Length = 462

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 149/312 (47%), Positives = 210/312 (67%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + PC  T+N +L+GL K  +  NA RMFR LQ+ G    +VTYN +I GLCK+G++  AR
Sbjct: 148 VAPCATTYNTLLDGLLKAGHVTNAFRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYAR 207

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKELG + HAPNA+TYTT+MKCCFR  +++ GLE   ++   GY  D F Y TVI+A 
Sbjct: 208 MVLKELGRTEHAPNAVTYTTVMKCCFRYGRFEQGLETFLSLLEGGYISDAFPYTTVISAL 267

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK GR++EA  Y E M+  G  LD   YNTLI+L C+EGK+  A+ LL+ ME+ G E D+
Sbjct: 268 VKKGRMQEANTYCELMIQSGSTLDNACYNTLIHLRCQEGKINDAFELLNMMEEGGLESDE 327

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT +IL++GLCK G I+ A   +  M  +G  SN+ AYNC++D L K  ++D AI +  S
Sbjct: 328 YTFSILVNGLCKMGQIEAAEKQIWSMEMMGMQSNVVAYNCLIDALCKCHEVDAAIKILHS 387

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M++KD F+Y+S+VH LCK  R   ASK L  CL  G  +L SA++AV+ GLR +G + + 
Sbjct: 388 MKLKDDFSYTSLVHGLCKVGRYHMASKFLRICLHEGNNVLASAKRAVISGLRSAGFKNDL 447

Query: 306 KKIQSKIRMAKI 317
           +K++S + MA++
Sbjct: 448 RKVRSALYMARL 459



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 129/282 (45%), Gaps = 4/282 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L   T   N+ L  LC+  + D A  +     + G  P++VTYN L+   C+   L  
Sbjct: 6   GHLALSTRLMNVGLASLCRGGWLDRAESVLVDAIRLGLPPDVVTYNTLLAAYCRVDGLDA 65

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              ++  + ++G  P+A+TY +++    R+      L++   M R G   D + Y  ++ 
Sbjct: 66  GLAVVHRMREAGVRPDAVTYNSLITGADRSGLTVRALDLFDEMLRSGVAPDSWSYNALMH 125

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + G  + A      M   GV     +YNTL++   K G +  A+ +   +++ G   
Sbjct: 126 CLFRSGHPEHAYRVFADMADRGVAPCATTYNTLLDGLLKAGHVTNAFRMFRYLQRAGLPV 185

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              T+  +I+GLCK+G +  AR+ L+ + +     N   Y  ++    + G+ +  +  F
Sbjct: 186 GIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPNAVTYTTVMKCCFRYGRFEQGLETF 245

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            S+     + D+F Y++++  L K  R+  A+      ++SG
Sbjct: 246 LSLLEGGYISDAFPYTTVISALVKKGRMQEANTYCELMIQSG 287


>gi|326527525|dbj|BAK08037.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 460

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 150/312 (48%), Positives = 211/312 (67%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + PC  T+N +L+GL +  +  NA RMFR LQ+ G    +VTYN +I GLCK+G++  AR
Sbjct: 146 VAPCATTYNTLLDGLFRFGHATNAYRMFRYLQRTGLPVGIVTYNTMINGLCKSGKVGYAR 205

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ELG + HAPN +TYTT+MKCCF+  ++  GLE   ++   GY  D F YCTVI+A 
Sbjct: 206 MVLRELGRTEHAPNVVTYTTVMKCCFKYGRFDQGLETFLSLLEGGYIPDLFPYCTVISAL 265

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK GR++EA  Y E M+  G +LD   YNTLI L CKEGKL+ A+ LL  ME+ G E D+
Sbjct: 266 VKKGRMEEANTYSELMIRSGFRLDSACYNTLIYLRCKEGKLDDAFELLSMMEEGGLESDE 325

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT +IL++GLCK G+ + A   L YM     +SN+ AYNC+VD L K  ++D AI +  +
Sbjct: 326 YTFSILVNGLCKMGHFEAAHKQLCYMEIRDMESNVIAYNCLVDALCKSDEVDAAIKLLHN 385

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M++KD FTY+S+VH LCK  R   ASK L  CL+ G  IL SA++AV+ GLR +G + + 
Sbjct: 386 MKLKDDFTYTSLVHGLCKVGRYHMASKFLRICLREGNSILASAKRAVIAGLRSAGFQNDV 445

Query: 306 KKIQSKIRMAKI 317
           +K+++ +RMA++
Sbjct: 446 RKVRAALRMARL 457



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 132/308 (42%), Gaps = 39/308 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +L   C+    D    +   +++ G  P+ +TYN LI G  + G    A 
Sbjct: 41  MPPDVVTYNTLLAAHCRASGLDAGFAVLHRMREAGVSPDAITYNSLIAGAARRGLTMRAL 100

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  +G AP+A +Y  +M C FR+   +    + + M  KG       Y T++   
Sbjct: 101 DLFDEMLQAGVAPDAWSYNALMHCLFRSGHPEDAYRVFADMAEKGVAPCATTYNTLLDGL 160

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
            + G    A      +   G+ + IV+YNT+IN  CK GK+  A ++L E+ +       
Sbjct: 161 FRFGHATNAYRMFRYLQRTGLPVGIVTYNTMINGLCKSGKVGYARMVLRELGRTEHAPNV 220

Query: 179 -----------------QGFEC-----------DKYTHTILIDGLCKAGNIKGARLHLEY 210
                            QG E            D + +  +I  L K G ++ A  + E 
Sbjct: 221 VTYTTVMKCCFKYGRFDQGLETFLSLLEGGYIPDLFPYCTVISALVKKGRMEEANTYSEL 280

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M + GF  +   YN ++    K+GK+D A  +   ME      D +T+S +V+ LCK   
Sbjct: 281 MIRSGFRLDSACYNTLIYLRCKEGKLDDAFELLSMMEEGGLESDEYTFSILVNGLCKMGH 340

Query: 267 LPSASKLL 274
             +A K L
Sbjct: 341 FEAAHKQL 348



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 126/279 (45%), Gaps = 4/279 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N+ L  LC+      A  +     + G  P++VTYN L+   C+A  L     +L 
Sbjct: 10  TRLMNVCLAALCRGGGIARAESVLVDAIRLGMPPDVVTYNTLLAAHCRASGLDAGFAVLH 69

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G +P+AITY +++    R       L++   M + G   D + Y  ++    + G
Sbjct: 70  RMREAGVSPDAITYNSLIAGAARRGLTMRALDLFDEMLQAGVAPDAWSYNALMHCLFRSG 129

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             ++A      M   GV     +YNTL++   + G    AY +   +++ G      T+ 
Sbjct: 130 HPEDAYRVFADMAEKGVAPCATTYNTLLDGLFRFGHATNAYRMFRYLQRTGLPVGIVTYN 189

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
            +I+GLCK+G +  AR+ L  + +     N+  Y  ++    K G+ D  +  F S+   
Sbjct: 190 TMINGLCKSGKVGYARMVLRELGRTEHAPNVVTYTTVMKCCFKYGRFDQGLETFLSLLEG 249

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             + D F Y +++  L K  R+  A+      ++SG R+
Sbjct: 250 GYIPDLFPYCTVISALVKKGRMEEANTYSELMIRSGFRL 288



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 4/159 (2%)

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            QL     N  +   C+ G +  A  +L +  + G   D  T+  L+   C+A  +    
Sbjct: 6   TQLSTRLMNVCLAALCRGGGIARAESVLVDAIRLGMPPDVVTYNTLLAAHCRASGLDAGF 65

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNL 261
             L  M + G   +   YN ++    + G    A+++F+ M       D+++Y++++H L
Sbjct: 66  AVLHRMREAGVSPDAITYNSLIAGAARRGLTMRALDLFDEMLQAGVAPDAWSYNALMHCL 125

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            ++     A ++     + GV    +    ++DGL   G
Sbjct: 126 FRSGHPEDAYRVFADMAEKGVAPCATTYNTLLDGLFRFG 164


>gi|242070261|ref|XP_002450407.1| hypothetical protein SORBIDRAFT_05g004830 [Sorghum bicolor]
 gi|241936250|gb|EES09395.1| hypothetical protein SORBIDRAFT_05g004830 [Sorghum bicolor]
          Length = 462

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/312 (47%), Positives = 209/312 (66%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + PC  T+N +L+GL K  +  NA RMFR LQ+ G    +VTYN +I GLCK+G++  AR
Sbjct: 148 VAPCATTYNTLLDGLFKAGHATNAYRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYAR 207

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKELG + HAPNA+TYTT+MKCCFR  +++ GLE   ++   GY  D F Y TVI+A 
Sbjct: 208 MVLKELGRTEHAPNAVTYTTVMKCCFRYGRFEQGLETFLSLLEGGYISDAFPYTTVISAL 267

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK GR++EA  Y E M+  G  LD   YNTLI+L C+EGK++ A+ LL+ ME+ G E D+
Sbjct: 268 VKKGRMQEANTYCELMIQSGSTLDNACYNTLIHLRCQEGKIDDAFELLNMMEEGGLESDE 327

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT +IL++GLCK G I+ A   +  M  +   SN+ AYNC++D L K  ++D AI +  S
Sbjct: 328 YTFSILVNGLCKMGQIEAAEKQIWSMEMMDMQSNVVAYNCLIDALCKCHEVDAAIKILHS 387

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M +KD FTY+S+VH LCK  R   ASK L  CL  G  +L SA++AV+ GLR +G + + 
Sbjct: 388 MRLKDDFTYTSLVHGLCKVGRYHMASKFLRICLHEGNNVLASAKRAVISGLRSAGFKNDL 447

Query: 306 KKIQSKIRMAKI 317
           +K++S + MA++
Sbjct: 448 RKVRSALYMARL 459



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 137/310 (44%), Gaps = 39/310 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L   C+    D  + +   +++ G  P+ VTYN LI G  ++G    A 
Sbjct: 43  LPPDVVTYNTLLAAHCRVAGLDAGIAVVHRMREAGVRPDAVTYNSLITGADRSGLTVRAL 102

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  SG AP++ +Y  +M C FR+   +    + + M  KG       Y T++   
Sbjct: 103 DLFDEMLRSGVAPDSWSYNALMHCLFRSGHPEHAYRVFADMADKGVAPCATTYNTLLDGL 162

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
            K G    A      +   G+ + IV+YNT+IN  CK GK+  A ++L E+ +       
Sbjct: 163 FKAGHATNAYRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPNA 222

Query: 179 -----------------QGFE-----------CDKYTHTILIDGLCKAGNIKGARLHLEY 210
                            QG E            D + +T +I  L K G ++ A  + E 
Sbjct: 223 VTYTTVMKCCFRYGRFEQGLETFLSLLEGGYISDAFPYTTVISALVKKGRMQEANTYCEL 282

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M + G   +   YN ++    ++GKID A  +   ME      D +T+S +V+ LCK  +
Sbjct: 283 MIQSGSTLDNACYNTLIHLRCQEGKIDDAFELLNMMEEGGLESDEYTFSILVNGLCKMGQ 342

Query: 267 LPSASKLLLS 276
           + +A K + S
Sbjct: 343 IEAAEKQIWS 352



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 127/282 (45%), Gaps = 4/282 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
             L   T   N+ L  LC+  + D A  +     + G  P++VTYN L+   C+   L  
Sbjct: 6   AQLALSTRLMNVGLAALCRGGWLDRAESVVVDAIRLGLPPDVVTYNTLLAAHCRVAGLDA 65

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              ++  + ++G  P+A+TY +++    R+      L++   M R G   D + Y  ++ 
Sbjct: 66  GIAVVHRMREAGVRPDAVTYNSLITGADRSGLTVRALDLFDEMLRSGVAPDSWSYNALMH 125

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + G  + A      M   GV     +YNTL++   K G    AY +   +++ G   
Sbjct: 126 CLFRSGHPEHAYRVFADMADKGVAPCATTYNTLLDGLFKAGHATNAYRMFRYLQRAGLPV 185

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              T+  +I+GLCK+G +  AR+ L+ + +     N   Y  ++    + G+ +  +  F
Sbjct: 186 GIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPNAVTYTTVMKCCFRYGRFEQGLETF 245

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            S+     + D+F Y++++  L K  R+  A+      ++SG
Sbjct: 246 LSLLEGGYISDAFPYTTVISALVKKGRMQEANTYCELMIQSG 287


>gi|47497141|dbj|BAD19190.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
 gi|47497588|dbj|BAD19658.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
          Length = 462

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 146/312 (46%), Positives = 210/312 (67%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + PC  T+N +L+G+ +  Y  NA RMFR LQ+ G    +VTYN +I GLC +G++  AR
Sbjct: 148 IAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYAR 207

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ELG + HAPN ITYT +MKCCF+  +++ GL+   ++  +GY  D + YCTVI+A 
Sbjct: 208 MVLRELGRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISAL 267

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK GRL EA +Y + M+ +G +LD V YNTLI++ C+EGKL+ A+ L+  ME  G E D+
Sbjct: 268 VKKGRLGEANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDE 327

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  IL++GLCK G+I+ A   L YM   G  SN+ AYNC+VD L K  ++D AI + + 
Sbjct: 328 YTFAILVNGLCKMGHIEAAEKQLFYMEIKGMQSNVVAYNCLVDALCKFQEVDAAIRLLQC 387

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M++KD FTY+S+VH LC+  R   ASK L  CL  G  +L SA++AV+ GLR SG + + 
Sbjct: 388 MKLKDDFTYTSLVHGLCRVGRYHMASKFLRICLHEGNNVLASAKRAVIAGLRSSGFKNDL 447

Query: 306 KKIQSKIRMAKI 317
           +K++  + MAK+
Sbjct: 448 RKVRVALNMAKL 459



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 125/279 (44%), Gaps = 4/279 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N+ L  LC+      A  +     + G  P++VTYN L+   C+A  L     ++ 
Sbjct: 12  TRLLNVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVVMG 71

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  P+A+TY +++    R       L++   M R G   D + Y  ++    + G
Sbjct: 72  RMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFRSG 131

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             ++A      M   G+     +YNTL++   + G    AY +   +++ G      T+ 
Sbjct: 132 HPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYN 191

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
            +I+GLC +G +  AR+ L  + +     N+  Y  ++    K G+ +  ++ F S+   
Sbjct: 192 TMINGLCSSGKVGYARMVLRELGRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDR 251

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             + D + Y +++  L K  RL  A+      L++G R+
Sbjct: 252 GYISDVYPYCTVISALVKKGRLGEANNYCDLMLQNGSRL 290



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 39/330 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L   C+    +  L +   +++ G  P+ VTYN LI G  + G    A 
Sbjct: 43  LPPDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHAL 102

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  SG AP++ +Y  +M C FR+   +    + + M  KG       Y T++   
Sbjct: 103 DLFDEMLRSGIAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGM 162

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
            + G    A      +   G+ + IV+YNT+IN  C  GK+  A ++L E+ +       
Sbjct: 163 FRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPNI 222

Query: 179 ----------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                                       +G+  D Y +  +I  L K G +  A  + + 
Sbjct: 223 ITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISALVKKGRLGEANNYCDL 282

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M + G   +   YN ++    ++GK+D A  +   ME      D +T++ +V+ LCK   
Sbjct: 283 MLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAILVNGLCKMGH 342

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + +A K L      G++    A   +VD L
Sbjct: 343 IEAAEKQLFYMEIKGMQSNVVAYNCLVDAL 372



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 4/151 (2%)

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           N  +   C+ G L AA  +L +  + G   D  T+  L+   C+A  ++   + +  M +
Sbjct: 16  NVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVVMGRMRE 75

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPS 269
            G + +   YN ++    + G   HA+++F+ M       DS++Y+ ++H L ++     
Sbjct: 76  AGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFRSGHPED 135

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           A ++     + G+    +    ++DG+  +G
Sbjct: 136 AYRVFADMAEKGIAPCDTTYNTLLDGMFRAG 166


>gi|115449175|ref|NP_001048367.1| Os02g0793200 [Oryza sativa Japonica Group]
 gi|113537898|dbj|BAF10281.1| Os02g0793200 [Oryza sativa Japonica Group]
 gi|215704904|dbj|BAG94932.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 473

 Score =  299 bits (766), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 146/312 (46%), Positives = 210/312 (67%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + PC  T+N +L+G+ +  Y  NA RMFR LQ+ G    +VTYN +I GLC +G++  AR
Sbjct: 159 IAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYAR 218

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ELG + HAPN ITYT +MKCCF+  +++ GL+   ++  +GY  D + YCTVI+A 
Sbjct: 219 MVLRELGRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISAL 278

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK GRL EA +Y + M+ +G +LD V YNTLI++ C+EGKL+ A+ L+  ME  G E D+
Sbjct: 279 VKKGRLGEANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDE 338

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  IL++GLCK G+I+ A   L YM   G  SN+ AYNC+VD L K  ++D AI + + 
Sbjct: 339 YTFAILVNGLCKMGHIEAAEKQLFYMEIKGMQSNVVAYNCLVDALCKFQEVDAAIRLLQC 398

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M++KD FTY+S+VH LC+  R   ASK L  CL  G  +L SA++AV+ GLR SG + + 
Sbjct: 399 MKLKDDFTYTSLVHGLCRVGRYHMASKFLRICLHEGNNVLASAKRAVIAGLRSSGFKNDL 458

Query: 306 KKIQSKIRMAKI 317
           +K++  + MAK+
Sbjct: 459 RKVRVALNMAKL 470



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 125/279 (44%), Gaps = 4/279 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N+ L  LC+      A  +     + G  P++VTYN L+   C+A  L     ++ 
Sbjct: 23  TRLLNVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVVMG 82

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  P+A+TY +++    R       L++   M R G   D + Y  ++    + G
Sbjct: 83  RMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFRSG 142

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             ++A      M   G+     +YNTL++   + G    AY +   +++ G      T+ 
Sbjct: 143 HPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYN 202

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
            +I+GLC +G +  AR+ L  + +     N+  Y  ++    K G+ +  ++ F S+   
Sbjct: 203 TMINGLCSSGKVGYARMVLRELGRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDR 262

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             + D + Y +++  L K  RL  A+      L++G R+
Sbjct: 263 GYISDVYPYCTVISALVKKGRLGEANNYCDLMLQNGSRL 301



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 39/330 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L   C+    +  L +   +++ G  P+ VTYN LI G  + G    A 
Sbjct: 54  LPPDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHAL 113

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  SG AP++ +Y  +M C FR+   +    + + M  KG       Y T++   
Sbjct: 114 DLFDEMLRSGIAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGM 173

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
            + G    A      +   G+ + IV+YNT+IN  C  GK+  A ++L E+ +       
Sbjct: 174 FRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPNI 233

Query: 179 ----------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                                       +G+  D Y +  +I  L K G +  A  + + 
Sbjct: 234 ITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISALVKKGRLGEANNYCDL 293

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M + G   +   YN ++    ++GK+D A  +   ME      D +T++ +V+ LCK   
Sbjct: 294 MLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAILVNGLCKMGH 353

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + +A K L      G++    A   +VD L
Sbjct: 354 IEAAEKQLFYMEIKGMQSNVVAYNCLVDAL 383



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 4/151 (2%)

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           N  +   C+ G L AA  +L +  + G   D  T+  L+   C+A  ++   + +  M +
Sbjct: 27  NVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVVMGRMRE 86

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPS 269
            G + +   YN ++    + G   HA+++F+ M       DS++Y+ ++H L ++     
Sbjct: 87  AGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFRSGHPED 146

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           A ++     + G+    +    ++DG+  +G
Sbjct: 147 AYRVFADMAEKGIAPCDTTYNTLLDGMFRAG 177


>gi|297794571|ref|XP_002865170.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311005|gb|EFH41429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 468

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/311 (47%), Positives = 216/311 (69%), Gaps = 2/311 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+L+ LCK+ +TDNA+ +F+ L K    PEL+TYNILI GLCK+ R+ +  
Sbjct: 150 LVPGVDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVN 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+L+EL  +G+ PNA+TYTT++K  F+ ++ + GLE+   MK++GYTFDG+  C V++A 
Sbjct: 209 WMLRELRKAGYTPNAVTYTTMLKMYFKTKRIEKGLELFLKMKKEGYTFDGYANCAVVSAL 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           +K GR +EA   M ++V  G +  DIVSYNTL+N+Y K+G L+A   LL+E+E +G + D
Sbjct: 269 IKTGRAEEAYGCMNELVRSGTRSQDIVSYNTLLNMYFKDGNLDAVDDLLEEIEMKGLKPD 328

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YTHTI+++GL K G+  GA  HL  + ++G   ++   NC++D L K G +D A+ +F 
Sbjct: 329 DYTHTIIVNGLLKIGHTGGAEKHLARIGEMGMQPSIATCNCLIDGLCKAGHVDRAMRLFA 388

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           SMEV+D FTY+S+VHNLCK  RL  ASKLLLSC   G++I  SA++AV+ GLR +   + 
Sbjct: 389 SMEVRDEFTYTSVVHNLCKDGRLVCASKLLLSCYNKGMKIPSSARRAVLSGLRETVSHQA 448

Query: 305 AKKIQSKIRMA 315
           A+K   KI+ A
Sbjct: 449 ARKTHFKIKAA 459



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 134/280 (47%), Gaps = 8/280 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI ++ LCK R  + A  +     + G +P+++TYN LIKG  +   +  A  + +
Sbjct: 13  TKLLNISVDSLCKFRNLEKAETLLIDGIRLGVLPDVITYNTLIKGYSRFIGIDEAYAVTR 72

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  P+  TY +++    +N      L++   M   G + D + Y T+++ + ++G
Sbjct: 73  RMREAGIEPDVATYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFRLG 132

Query: 130 RLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           +  EA   + E +   G+   + +YN L++  CK G  + A  L   + K   + +  T+
Sbjct: 133 KHGEAFRILHEDIRLAGLVPGVDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTY 191

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            ILI+GLCK+  +      L  + K G+  N   Y  ++    K  +I+  + +F  M+ 
Sbjct: 192 NILINGLCKSRRVGSVNWMLRELRKAGYTPNAVTYTTMLKMYFKTKRIEKGLELFLKMK- 250

Query: 249 KDSFTYS-----SMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           K+ +T+      ++V  L K  R   A   +   ++SG R
Sbjct: 251 KEGYTFDGYANCAVVSALIKTGRAEEAYGCMNELVRSGTR 290



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 145/333 (43%), Gaps = 40/333 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ G  +    D A  + R +++ G  P++ TYN LI G  K   L     +
Sbjct: 46  PDVITYNTLIKGYSRFIGIDEAYAVTRRMREAGIEPDVATYNSLISGAAKNLMLNRVLQL 105

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI--------------------LSAMK 107
             E+  SG +P+  +Y T+M C FR  K+     I                    L A+ 
Sbjct: 106 FDEMLHSGLSPDMWSYNTLMSCYFRLGKHGEAFRILHEDIRLAGLVPGVDTYNILLDALC 165

Query: 108 RKGYTFDGF---------------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           + G+T +                  Y  +I    K  R+      + ++   G   + V+
Sbjct: 166 KSGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVNWMLRELRKAGYTPNAVT 225

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           Y T++ +Y K  ++E    L  +M+K+G+  D Y +  ++  L K G  + A   +  + 
Sbjct: 226 YTTMLKMYFKTKRIEKGLELFLKMKKEGYTFDGYANCAVVSALIKTGRAEEAYGCMNELV 285

Query: 213 KIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
           + G  S ++ +YN +++   KDG +D   ++ E +E+K    D +T++ +V+ L K    
Sbjct: 286 RSGTRSQDIVSYNTLLNMYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLKIGHT 345

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             A K L    + G++   +    ++DGL  +G
Sbjct: 346 GGAEKHLARIGEMGMQPSIATCNCLIDGLCKAG 378


>gi|21618238|gb|AAM67288.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/311 (47%), Positives = 216/311 (69%), Gaps = 2/311 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+L+ LCK+ +TDNA+ +F+ L K    PEL+TYNILI GLCK+ R+ +  
Sbjct: 145 LVPGIDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVD 203

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+++EL  SG+ PNA+TYTT++K  F+ ++ + GL++   MK++GYTFDGF  C V++A 
Sbjct: 204 WMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSAL 263

Query: 126 VKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           +K GR +EA + M ++V  G +  DIVSYNTL+NLY K+G L+A   LL+E+E +G + D
Sbjct: 264 IKTGRAEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPD 323

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YTHTI+++GL   GN  GA  HL  + ++G   ++   NC++D L K G +D A+ +F 
Sbjct: 324 DYTHTIIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFA 383

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           SMEV+D FTY+S+VHNLCK  RL  ASKLLLSC   G++I  SA++AV+ G+R +   + 
Sbjct: 384 SMEVRDEFTYTSVVHNLCKDGRLVCASKLLLSCYNKGMKIPSSARRAVLSGIRETVSYQA 443

Query: 305 AKKIQSKIRMA 315
           A+K   KI+ A
Sbjct: 444 ARKTHIKIKAA 454



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 133/279 (47%), Gaps = 6/279 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI +N LCK R  + A  +     + G +P+++TYN LIKG  +   +  A  + +
Sbjct: 8   TKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVTR 67

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  P+  TY +++    +N      L++   M   G + D + Y T+++ + K+G
Sbjct: 68  RMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLG 127

Query: 130 RLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           R  EA   + E +   G+   I +YN L++  CK G  + A  L   + K   + +  T+
Sbjct: 128 RHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTY 186

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            ILI+GLCK+  +      +  + K G+  N   Y  ++    K  +I+  + +F  M+ 
Sbjct: 187 NILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKK 246

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +    D F   ++V  L K  R   A + +   ++SG R
Sbjct: 247 EGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTR 285



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 144/333 (43%), Gaps = 40/333 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ G  +    D A  + R +++ G  P++ TYN LI G  K   L     +
Sbjct: 41  PDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQL 100

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI--------------------LSAMK 107
             E+  SG +P+  +Y T+M C F+  ++    +I                    L A+ 
Sbjct: 101 FDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALC 160

Query: 108 RKGYTFDG---------------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           + G+T +                  Y  +I    K  R+      M ++   G   + V+
Sbjct: 161 KSGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVT 220

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           Y T++ +Y K  ++E    L  +M+K+G+  D + +  ++  L K G  + A   +  + 
Sbjct: 221 YTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELV 280

Query: 213 KIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
           + G  S ++ +YN +++   KDG +D   ++ E +E+K    D +T++ +V+ L      
Sbjct: 281 RSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNT 340

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             A K L    + G++        ++DGL  +G
Sbjct: 341 GGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAG 373


>gi|18422700|ref|NP_568665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635755|sp|Q56XR6.2|PP421_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46680
 gi|332008030|gb|AED95413.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 468

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/311 (47%), Positives = 216/311 (69%), Gaps = 2/311 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+L+ LCK+ +TDNA+ +F+ L K    PEL+TYNILI GLCK+ R+ +  
Sbjct: 150 LVPGIDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVD 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+++EL  SG+ PNA+TYTT++K  F+ ++ + GL++   MK++GYTFDGF  C V++A 
Sbjct: 209 WMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSAL 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           +K GR +EA + M ++V  G +  DIVSYNTL+NLY K+G L+A   LL+E+E +G + D
Sbjct: 269 IKTGRAEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPD 328

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YTHTI+++GL   GN  GA  HL  + ++G   ++   NC++D L K G +D A+ +F 
Sbjct: 329 DYTHTIIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFA 388

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           SMEV+D FTY+S+VHNLCK  RL  ASKLLLSC   G++I  SA++AV+ G+R +   + 
Sbjct: 389 SMEVRDEFTYTSVVHNLCKDGRLVCASKLLLSCYNKGMKIPSSARRAVLSGIRETVSYQA 448

Query: 305 AKKIQSKIRMA 315
           A+K   KI+ A
Sbjct: 449 ARKTHIKIKAA 459



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 133/279 (47%), Gaps = 6/279 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI +N LCK R  + A  +     + G +P+++TYN LIKG  +   +  A  + +
Sbjct: 13  TKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVTR 72

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  P+  TY +++    +N      L++   M   G + D + Y T+++ + K+G
Sbjct: 73  RMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLG 132

Query: 130 RLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           R  EA   + E +   G+   I +YN L++  CK G  + A  L   + K   + +  T+
Sbjct: 133 RHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTY 191

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            ILI+GLCK+  +      +  + K G+  N   Y  ++    K  +I+  + +F  M+ 
Sbjct: 192 NILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKK 251

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +    D F   ++V  L K  R   A + +   ++SG R
Sbjct: 252 EGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTR 290



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 144/333 (43%), Gaps = 40/333 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ G  +    D A  + R +++ G  P++ TYN LI G  K   L     +
Sbjct: 46  PDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQL 105

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI--------------------LSAMK 107
             E+  SG +P+  +Y T+M C F+  ++    +I                    L A+ 
Sbjct: 106 FDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALC 165

Query: 108 RKGYTFDGF---------------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           + G+T +                  Y  +I    K  R+      M ++   G   + V+
Sbjct: 166 KSGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVT 225

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           Y T++ +Y K  ++E    L  +M+K+G+  D + +  ++  L K G  + A   +  + 
Sbjct: 226 YTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELV 285

Query: 213 KIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
           + G  S ++ +YN +++   KDG +D   ++ E +E+K    D +T++ +V+ L      
Sbjct: 286 RSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNT 345

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             A K L    + G++        ++DGL  +G
Sbjct: 346 GGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAG 378


>gi|62320562|dbj|BAD95174.1| hypothetical protein [Arabidopsis thaliana]
          Length = 468

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/311 (47%), Positives = 216/311 (69%), Gaps = 2/311 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+L+ LCK+ +TDNA+ +F+ L K    PEL+TYNILI GLCK+ R+ +  
Sbjct: 150 LVPGIDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVD 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+++EL  SG+ PNA+TYTT++K  F+ ++ + GL++   MK++GYTFDGF  C V++A 
Sbjct: 209 WMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSAL 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           +K GR +EA + M ++V  G +  DIVSYNTL+NLY K+G L+A   LL+E+E +G + D
Sbjct: 269 IKTGRAEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPD 328

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YTHTI+++GL   GN  GA  HL  + ++G   ++   NC++D L K G +D A+ +F 
Sbjct: 329 DYTHTIIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFA 388

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           SMEV+D FTY+S+VHNLCK  RL  ASKLLLSC   G++I  SA++AV+ G+R +   + 
Sbjct: 389 SMEVRDEFTYTSVVHNLCKDGRLVCASKLLLSCYNKGMKIPSSARRAVLSGIRETVSYQA 448

Query: 305 AKKIQSKIRMA 315
           A+K   KI+ A
Sbjct: 449 ARKTHIKIKAA 459



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 133/279 (47%), Gaps = 6/279 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI +N LCK R  + A  +     + G +P+++TYN LIKG  +   +  A  + +
Sbjct: 13  TKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVTR 72

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  P+  TY +++    +N      L++   M   G + D + Y T+++ + K+G
Sbjct: 73  RMREAGIEPDVTTYNSLISGAAKNLVLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLG 132

Query: 130 RLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           R  EA   + E +   G+   I +YN L++  CK G  + A  L   + K   + +  T+
Sbjct: 133 RHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTY 191

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            ILI+GLCK+  +      +  + K G+  N   Y  ++    K  +I+  + +F  M+ 
Sbjct: 192 NILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKK 251

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +    D F   ++V  L K  R   A + +   ++SG R
Sbjct: 252 EGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTR 290



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 144/333 (43%), Gaps = 40/333 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ G  +    D A  + R +++ G  P++ TYN LI G  K   L     +
Sbjct: 46  PDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLVLNRVLQL 105

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI--------------------LSAMK 107
             E+  SG +P+  +Y T+M C F+  ++    +I                    L A+ 
Sbjct: 106 FDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALC 165

Query: 108 RKGYTFDGF---------------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           + G+T +                  Y  +I    K  R+      M ++   G   + V+
Sbjct: 166 KSGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVT 225

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           Y T++ +Y K  ++E    L  +M+K+G+  D + +  ++  L K G  + A   +  + 
Sbjct: 226 YTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELV 285

Query: 213 KIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
           + G  S ++ +YN +++   KDG +D   ++ E +E+K    D +T++ +V+ L      
Sbjct: 286 RSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNT 345

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             A K L    + G++        ++DGL  +G
Sbjct: 346 GGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAG 378


>gi|125541439|gb|EAY87834.1| hypothetical protein OsI_09254 [Oryza sativa Indica Group]
          Length = 502

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/315 (46%), Positives = 212/315 (67%), Gaps = 1/315 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + PC  T+N +L+G+ +  Y  NA RMFR LQ+ G    +VTYN +I GLC +G++  AR
Sbjct: 148 IAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYAR 207

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ELG + HAPN ITYT +MKCCF+  +++ GL+   ++  +GY  D + YCTVI+A 
Sbjct: 208 MVLRELGRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISAL 267

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK GRL EA +Y + M+ +G +LD V YNTLI++ C+EGKL+ A+ L+  ME  G E D+
Sbjct: 268 VKKGRLGEANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDE 327

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  IL++GLCK G+I+ A   L YM   G  SN+ AYNC+VD L K  ++D AI + + 
Sbjct: 328 YTFAILVNGLCKMGHIEAAEKQLFYMEIKGMQSNVVAYNCLVDALCKFQEVDAAIRLLQC 387

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M++KD FTY+S+VH LC+  R   ASK L  CL+ G  +L SA++AV+ GLR SG + + 
Sbjct: 388 MKLKDDFTYTSLVHGLCRVGRYHMASKFLRICLREGNNVLASAKRAVIAGLRSSGFKNDL 447

Query: 306 KKIQS-KIRMAKISH 319
           +K++S K +  KI H
Sbjct: 448 RKVRSVKPKRNKIKH 462



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 125/279 (44%), Gaps = 4/279 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N+ L  LC+      A  +     + G  P++VTYN L+   C+A  L     ++ 
Sbjct: 12  TRLLNVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLAVMG 71

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  P+A+TY +++    R       L++   M R G   D + Y  ++    + G
Sbjct: 72  RMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRAGIAPDSWSYNPLMHCLFRSG 131

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             ++A      M   G+     +YNTL++   + G    AY +   +++ G      T+ 
Sbjct: 132 HPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYN 191

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
            +I+GLC +G +  AR+ L  + +     N+  Y  ++    K G+ +  ++ F S+   
Sbjct: 192 TMINGLCSSGKVGYARMVLRELGRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDR 251

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             + D + Y +++  L K  RL  A+      L++G R+
Sbjct: 252 GYISDVYPYCTVISALVKKGRLGEANNYCDLMLQNGSRL 290



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 139/330 (42%), Gaps = 39/330 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L   C+    +  L +   +++ G  P+ VTYN LI G  + G    A 
Sbjct: 43  LPPDVVTYNTLLAAHCRAAGLEAGLAVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHAL 102

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  +G AP++ +Y  +M C FR+   +    + + M  KG       Y T++   
Sbjct: 103 DLFDEMLRAGIAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGM 162

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
            + G    A      +   G+ + IV+YNT+IN  C  GK+  A ++L E+ +       
Sbjct: 163 FRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPNI 222

Query: 179 ----------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                                       +G+  D Y +  +I  L K G +  A  + + 
Sbjct: 223 ITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISALVKKGRLGEANNYCDL 282

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M + G   +   YN ++    ++GK+D A  +   ME      D +T++ +V+ LCK   
Sbjct: 283 MLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAILVNGLCKMGH 342

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + +A K L      G++    A   +VD L
Sbjct: 343 IEAAEKQLFYMEIKGMQSNVVAYNCLVDAL 372



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 4/151 (2%)

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           N  +   C+ G L AA  +L +  + G   D  T+  L+   C+A  ++     +  M +
Sbjct: 16  NVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLAVMGRMRE 75

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPS 269
            G + +   YN ++    + G   HA+++F+ M       DS++Y+ ++H L ++     
Sbjct: 76  AGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRAGIAPDSWSYNPLMHCLFRSGHPED 135

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           A ++     + G+    +    ++DG+  +G
Sbjct: 136 AYRVFADMAEKGIAPCDTTYNTLLDGMFRAG 166


>gi|2894600|emb|CAA17134.1| putative protein [Arabidopsis thaliana]
 gi|7268543|emb|CAB78793.1| putative protein [Arabidopsis thaliana]
          Length = 1208

 Score =  273 bits (699), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 136/291 (46%), Positives = 195/291 (67%), Gaps = 19/291 (6%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           DNAL +F+ +Q   F PEL+TYNILI GLCK+ R+ TA+W+L EL  SG+ PNA+TYTTI
Sbjct: 153 DNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTI 211

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +K  F+ R+ + GL++   MKR+GYT+DG+ Y  V++A +K GR KEA +YM+++V    
Sbjct: 212 LKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVR--- 268

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
                          K+G L+A   LL E+E++G + D+YTHTI+++GL + G  + A  
Sbjct: 269 ---------------KDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEE 313

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKR 266
           H   M ++G   NL   NC+VD L K G +D A+  FESMEVKD +TY+S+VHNLCK  R
Sbjct: 314 HFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKDEYTYTSVVHNLCKDMR 373

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
              ASKLLLSC   G++I  SA++AV+ GLR SGC  EA+K ++++++  +
Sbjct: 374 FVCASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEARKAKAEMKLTLV 424



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 139/316 (43%), Gaps = 33/316 (10%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI ++ LCK R  + A  +     + G  P++VTYN LI G C+   +  A  + +
Sbjct: 13  TRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTR 72

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + D+G  P+  TY +++    R       L +   M   G   D + Y T++  + K+G
Sbjct: 73  RMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLG 132

Query: 130 RLKEATDYM-EQMVTDGVQLD----------------IVSYNTLINLYCKEGKLEAAYLL 172
           + +EA   + + +   G+  D                +++YN LIN  CK  ++  A  +
Sbjct: 133 KHEEAFRVLYKDLQLAGLNPDNALELFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWM 192

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
           L E++K G+  +  T+T ++    K   I +G +L LE M + G+  +  AY  +V  L 
Sbjct: 193 LTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLE-MKREGYTYDGYAYFAVVSALI 251

Query: 232 KDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           K G+   A    + +  KD                L +   LL    + G++  +     
Sbjct: 252 KTGRTKEAYEYMQELVRKDG--------------NLDAVDDLLGEIERRGMKADEYTHTI 297

Query: 292 VVDGLRHSGCRREAKK 307
           +V+GL  +G  R A++
Sbjct: 298 IVNGLLRTGQTRRAEE 313


>gi|9758504|dbj|BAB08912.1| unnamed protein product [Arabidopsis thaliana]
          Length = 431

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 126/291 (43%), Positives = 188/291 (64%), Gaps = 19/291 (6%)

Query: 25  YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84
           +TDNA+ +F+ L K    PEL+TYNILI GLCK+ R+ +  W+++EL  SG+ PNA+TYT
Sbjct: 151 HTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYT 209

Query: 85  TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           T++K  F+ ++ + GL++   MK++GYTFDGF  C V++A +K GR +EA + M ++V  
Sbjct: 210 TMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRS 269

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
                             +G L+A   LL+E+E +G + D YTHTI+++GL   GN  GA
Sbjct: 270 ------------------DGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGA 311

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA 264
             HL  + ++G   ++   NC++D L K G +D A+ +F SMEV+D FTY+S+VHNLCK 
Sbjct: 312 EKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASMEVRDEFTYTSVVHNLCKD 371

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
            RL  ASKLLLSC   G++I  SA++AV+ G+R +   + A+K   KI+ A
Sbjct: 372 GRLVCASKLLLSCYNKGMKIPSSARRAVLSGIRETVSYQAARKTHIKIKAA 422



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 153/330 (46%), Gaps = 40/330 (12%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI +N LCK R  + A  +     + G +P+++TYN LIKG  +   +  A  + +
Sbjct: 13  TKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVTR 72

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + ++G  P+  TY +++    +N      L++   M   G + D + Y T+++ + K+G
Sbjct: 73  RMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLG 132

Query: 130 RLKEATDYMEQMV------TDG-----------VQLDIVSYNTLINLYCKEGKLEAAYLL 172
           R  EA   + + +      TD            V+ ++++YN LIN  CK  ++ +   +
Sbjct: 133 RHGEAFKILHEDIHLAGGHTDNAIELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWM 192

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSN------------ 219
           + E++K G+  +  T+T ++    K   I KG +L L+ M K G+  +            
Sbjct: 193 MRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLK-MKKEGYTFDGFANCAVVSALI 251

Query: 220 -----LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
                 EAY C+ + +  DG +D   ++ E +E+K    D +T++ +V+ L        A
Sbjct: 252 KTGRAEEAYECMHELVRSDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGA 311

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            K L    + G++        ++DGL  +G
Sbjct: 312 EKHLACIGEMGMQPSVVTCNCLIDGLCKAG 341



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T  I++NGL     T  A +    + + G  P +VT N LI GLCKAG +  A 
Sbjct: 288 LKPDDYTHTIIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAM 347

Query: 66  WILKELGDSGHAPNAITYTTIM 87
            +   +       +  TYT+++
Sbjct: 348 RLFASM----EVRDEFTYTSVV 365


>gi|224137392|ref|XP_002322546.1| predicted protein [Populus trichocarpa]
 gi|222867176|gb|EEF04307.1| predicted protein [Populus trichocarpa]
          Length = 264

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/267 (39%), Positives = 159/267 (59%), Gaps = 18/267 (6%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           NI I  +CKA  L+ A  ++ +    G  P+ +TY T++    R   ++    +L  MK 
Sbjct: 11  NICIASICKARHLKRAEIVIIDGTILGVLPDVVTYDTLINAYSRFVSFEAAYSVLDRMKE 70

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
                D F   ++IA  ++   L +  D  E+M+   ++ D+ SYNTL+  + K GK   
Sbjct: 71  ACINPDVFTCNSLIAGAMRHCLLSKCMDLFEEMLEWRIKADVWSYNTLMRCFFKLGKP-- 128

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
                DEM +        THT L++GLC+ G++ GA   +EYMN +GF+SNL A N +VD
Sbjct: 129 -----DEMNR--------THTTLMNGLCEEGDVYGA---MEYMNVVGFNSNLVALNTMVD 172

Query: 229 RLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
              K   ID A+ +F+SM+ +DSF++SS++HNLCK  R   ASKLLLSC++SG+ IL S 
Sbjct: 173 GWCKADWIDCALKIFDSMDTRDSFSHSSLIHNLCKDGRFRCASKLLLSCVRSGMSILPST 232

Query: 289 QKAVVDGLRHSGCRREAKKIQSKIRMA 315
           + AV D L  SGC+REAK+++S+I++A
Sbjct: 233 KHAVFDSLSRSGCQREAKRLKSEIKLA 259



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 22/227 (9%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ ++N   +    + A  +   +++    P++ T N LI G  +   L     +
Sbjct: 40  PDVVTYDTLINAYSRFVSFEAAYSVLDRMKEACINPDVFTCNSLIAGAMRHCLLSKCMDL 99

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ +     +  +Y T+M+C F     KLG      M R         + T++    +
Sbjct: 100 FEEMLEWRIKADVWSYNTLMRCFF-----KLGKP--DEMNRT--------HTTLMNGLCE 144

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A +YM  +   G   ++V+ NT+++ +CK   ++ A  + D M+ +    D ++
Sbjct: 145 EGDVYGAMEYMNVV---GFNSNLVALNTMVDGWCKADWIDCALKIFDSMDTR----DSFS 197

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           H+ LI  LCK G  + A   L    + G        + + D L + G
Sbjct: 198 HSSLIHNLCKDGRFRCASKLLLSCVRSGMSILPSTKHAVFDSLSRSG 244


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 164/316 (51%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN +L+GLC      +A+++F  + K G  P+++TY+ +I GLCK G    A 
Sbjct: 6   LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK++ + G  PN + Y TI+    ++R     ++  S M ++G   D F Y +++  F
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGF 125

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +GR+ EAT   +QMV   V  + V++  LI+  CK+  +  A+L+ + M ++G E D 
Sbjct: 126 CNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDV 185

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+  L+DG C    +  A+     M++ G   N+ +YN +++   K G+ID A  +   
Sbjct: 186 YTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAE 245

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D FTYS+++   C+  R   A +LL      G+         V+DGL   G 
Sbjct: 246 MSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGH 305

Query: 302 RREAKKIQSKIRMAKI 317
             EA ++   ++ +KI
Sbjct: 306 LDEAFELLKAMQESKI 321



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 144/302 (47%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++ LCK+R    A+  F  + K G  P++ TY+ ++ G C  GR+  A  +
Sbjct: 78  PNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSL 137

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++ +    PN +T+T ++    + R       +   M  KG   D + Y  ++  +  
Sbjct: 138 FKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCS 197

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ EA      M   G   ++ SYN LIN +CK G+++ A  LL EM  +    D +T
Sbjct: 198 RSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFT 257

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+ G C+ G  + A+  L+ M   G   NL  Y+ ++D L K G +D A  + ++M+
Sbjct: 258 YSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQ 317

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 + F Y+ ++  +C   +L +A +L  +    G++        ++ GL   G   
Sbjct: 318 ESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSN 377

Query: 304 EA 305
           EA
Sbjct: 378 EA 379



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 160/320 (50%), Gaps = 14/320 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TF I+++GLCK R    A  +F  + + G  P++ TYN L+ G C   +
Sbjct: 141 MVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQ 200

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +   +   G APN  +Y  ++    ++ +      +L+ M  K  T D F Y T
Sbjct: 201 MDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYST 260

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F ++GR +EA + +++M + G+  ++++Y+ +++  CK G L+ A+ LL  M++  
Sbjct: 261 LMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESK 320

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E + + +TILI+G+C  G ++ AR     +   G    +  Y  ++  L K G  + A 
Sbjct: 321 IEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEAC 380

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL-------LSCLKSGVRI---LK 286
            +F  M V     +S TY+ ++    +    P+A +L+        S   S  R+   L+
Sbjct: 381 ELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDLE 440

Query: 287 SAQKAVVDGLRHSGCRREAK 306
           S+ + +   +R S   R+ K
Sbjct: 441 SSDEIISQFMRGSSQDRKTK 460



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 39/160 (24%)

Query: 176 MEKQGFECDKYTHTILI-----------------------------------DGLCKAGN 200
           M K G +    T   L+                                   +GLCK GN
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSS 256
              A   L+ M + G   N+ AYN I+D L KD  +  A++ F  M       D FTYSS
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++H  C   R+  A+ L    ++  V   K     ++DGL
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGL 160


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 163/312 (52%), Gaps = 4/312 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P    +N ++NGLCKNR  +NAL +F G++K G V + VTYN LI GLC +GR   A 
Sbjct: 716  LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAA 775

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +L+++      PN I +T ++    +         +   M R+    +   Y ++I  F
Sbjct: 776  RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGF 835

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               GRL +A    + MV+ G   D+V+YNTLI  +CK  ++E    L  EM  QG   D 
Sbjct: 836  CIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDA 895

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +T+  LI G C+AG +  A+     M   G   ++  YN ++D L  +GKI+ A+ + E 
Sbjct: 896  FTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVED 955

Query: 246  MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            ++      D  TY+ ++  +C+  ++  A  L  S  + GV++   A   ++ GL  +G 
Sbjct: 956  LQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGL 1015

Query: 302  RREAKKIQSKIR 313
            RREA K+ ++++
Sbjct: 1016 RREADKLCTRMK 1027



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 151/318 (47%), Gaps = 5/318 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+     P    +N +++ LCKN   + AL +   ++K G    +LVTYN L+ GLC +G
Sbjct: 161 MVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSG 220

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
             R A  IL+++      P+  T+T ++    +        E+   M +     +   Y 
Sbjct: 221 EWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYN 280

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++I      GRL  A    + M + G   ++V+YNTLIN +CK  ++E    L   M ++
Sbjct: 281 SLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYRE 340

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D +T+  LI G C+ G ++ A+    +M   G   ++  +  ++  L  +G+I  A
Sbjct: 341 GLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSA 400

Query: 240 INVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +  F  M   + +     Y+ M+H LCKA ++  A +L       GV+        ++ G
Sbjct: 401 MVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILG 460

Query: 296 LRHSGCRREAKKIQSKIR 313
           L  +G RREA ++  +++
Sbjct: 461 LCKNGPRREADELFRRMK 478



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 136/276 (49%), Gaps = 5/276 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F I+++  C+      AL +   + K G+ P +VT+  L+ G C   R+  A  ++  +
Sbjct: 102 SFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASM 161

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKIGR 130
             SG+ PN + Y T++ C  +N    + LE+L+ M++KG    D   Y T++      G 
Sbjct: 162 VKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGE 221

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            ++A   +  M    +  D+ ++  LI+ + K+G L+ A  L  +M +     +  T+  
Sbjct: 222 WRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNS 281

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           LI+GLC  G +  A+   + M   G   N+  YN +++   K  +++  + +F+ M    
Sbjct: 282 LINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREG 341

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            V D+FTY++++H  C+  +L  A  +    +  GV
Sbjct: 342 LVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGV 377



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 131/284 (46%), Gaps = 6/284 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L     T+N +L GLC +     A R+ R + K    P++ T+  LI    K G L  
Sbjct: 200 GRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDE 259

Query: 64  ARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           A+ + K++  S   PN +TY +++   C   R Y    +    M  KG   +   Y T+I
Sbjct: 260 AQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYH-AKKTFDLMASKGCFPNVVTYNTLI 318

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K  R+++     ++M  +G+  D  +YNTLI+ YC+ GKL  A  +   M   G  
Sbjct: 319 NGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVT 378

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  TH IL+ GLC  G I  A +    M        + AYN ++  L K  K++ A  +
Sbjct: 379 PDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWEL 438

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           F  + V+    D+ TY+ M+  LCK      A +L     + G+
Sbjct: 439 FCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 147/316 (46%), Gaps = 7/316 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    F  +L  +   R  +  +   + ++  G   +L ++ ILI   C+  R
Sbjct: 56  MVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSR 115

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A  IL ++   G+ P+ +T+ +++   C RNR +     ++++M + GY  +   Y 
Sbjct: 116 LSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHD-AFSLVASMVKSGYEPNVVVYN 174

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           T+I    K G +  A + + +M   G +  D+V+YNTL+   C  G+   A  +L +M K
Sbjct: 175 TLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTK 234

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +    D +T T LID   K GN+  A+   + M +     N   YN +++ L   G++ H
Sbjct: 235 RRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYH 294

Query: 239 AINVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A   F+ M  K  F    TY+++++  CK++R+    KL     + G+         ++ 
Sbjct: 295 AKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIH 354

Query: 295 GLRHSGCRREAKKIQS 310
           G    G  R AK I S
Sbjct: 355 GYCQVGKLRVAKDIFS 370



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 130/260 (50%), Gaps = 1/260 (0%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+   + P    F  +++   K      A  +++ + +    P ++TYN LI G C  GR
Sbjct: 781  MVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGR 840

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L  A+ +   +   G  P+ +TY T++    ++++ + G+++   M  +G   D F Y T
Sbjct: 841  LGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNT 900

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I  + + G+L  A     +MV  GV  DIV+YN L++  C  GK+E A +++++++K  
Sbjct: 901  LIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQ 960

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             + D  T+ I+I G+C+   +K A      + + G   +  AY  ++  L ++G    A 
Sbjct: 961  MDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREAD 1020

Query: 241  NVFESMEVKDSFTYSSMVHN 260
             +   M+ +D F  S  +++
Sbjct: 1021 KLCTRMK-EDGFMPSERIYD 1039



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++AL +F  + +   +P +V +  L+  +    R  T  +  +++   G + +  ++T +
Sbjct: 47  EDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTIL 106

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  +  L L IL  M + GY      + +++  F    R+ +A   +  MV  G 
Sbjct: 107 IHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGY 166

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGAR 205
           + ++V YNTLI+  CK G +  A  LL+EMEK+G    D  T+  L+ GLC +G  + A 
Sbjct: 167 EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAA 226

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
             L  M K   + ++  +  ++D   K G +D A  +++ M       ++ TY+S+++ L
Sbjct: 227 RILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGL 286

Query: 262 CKAKRLPSASK 272
           C   RL  A K
Sbjct: 287 CMHGRLYHAKK 297



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 138/309 (44%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L  + K    D  + +F  ++  G   +L ++ ILI   C+  R   A  +
Sbjct: 613 PSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALAL 672

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G  P+ +T  +++    +  +++  + ++ +M   G   +   Y TVI    K
Sbjct: 673 LGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCK 732

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              L  A +    M   G+  D V+YNTLI+  C  G+   A  LL +M K+  + +   
Sbjct: 733 NRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIF 792

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            T LID   K GN+  A+   + M +     N+  YN +++     G++  A ++F+ M 
Sbjct: 793 FTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMV 852

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D  TY++++   CK+KR+    KL       G+         ++ G   +G   
Sbjct: 853 SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLN 912

Query: 304 EAKKIQSKI 312
            A+K+ +++
Sbjct: 913 VAQKVFNRM 921



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 5/259 (1%)

Query: 54  GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
           G   + R   A  +  E+  S   P+ + +T ++      R+Y+  +     M+  G + 
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISH 98

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D + +  +I  F +  RL  A   + +M+  G    IV++ +L++ +C   ++  A+ L+
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGK 232
             M K G+E +   +  LID LCK G++  A   L  M K G   ++L  YN ++  L  
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCY 218

Query: 233 DGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
            G+   A  +   M  +    D FT+++++    K   L  A +L    L+S +      
Sbjct: 219 SGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVT 278

Query: 289 QKAVVDGLRHSGCRREAKK 307
             ++++GL   G    AKK
Sbjct: 279 YNSLINGLCMHGRLYHAKK 297



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 12/182 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG CK+R  ++ +++F+ + + G V +  TYN LI G C+ G+LR A+ I
Sbjct: 309 PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDI 368

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-----KRKGYTFDGF-GYCTV 121
              +   G  P+ IT+  ++     N       EI SAM      R G  + G   Y  +
Sbjct: 369 FSWMVSCGVTPDIITHCILLHGLCVNG------EIGSAMVKFNDMRSGEKYLGIVAYNIM 422

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    K  +++EA +   ++  +GV+ D  +Y  +I   CK G    A  L   M++ G 
Sbjct: 423 IHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482

Query: 182 EC 183
            C
Sbjct: 483 IC 484



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 143/370 (38%), Gaps = 63/370 (17%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +NIM++GLCK    + A  +F  L   G  P+  TY I+I GLCK G  R A  + + 
Sbjct: 417 VAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRR 476

Query: 71  L--------GDSGH-----APNAITYTTIMKCCFRNRKYK------------------LG 99
           +         + GH       N ++  TI+ C  R R                     +G
Sbjct: 477 MKEDGIICQAEDGHLGEHGTNNQVSLGTIIICPKRRRSIMESGDLYYYYSDTTLWSSLVG 536

Query: 100 L-EILSAMKRKGY-----------------TFDGFG----------YCTVIAAFVKIGRL 131
           L  I S+   KG+                 +F G            Y   + + +   + 
Sbjct: 537 LIPIASSSSVKGFVRRHLLLLERGNNPESRSFSGASHHHHHHHHHHYRERLRSELHCIKF 596

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A     +M+       IV +  ++    K  K +    L  +ME  G   D Y+ TIL
Sbjct: 597 DDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTIL 656

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           I   C+      A   L  M K+GF  ++     +++   +  +   A+++ +SM     
Sbjct: 657 IHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGL 716

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             +   Y+++++ LCK + L +A ++     K G+         ++ GL +SG   +A +
Sbjct: 717 EPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAAR 776

Query: 308 IQSKIRMAKI 317
           +   +   KI
Sbjct: 777 LLRDMVKRKI 786



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 104/247 (42%), Gaps = 39/247 (15%)

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  S   P+ + +T ++    +  K+ + + +   M+  G + D + +  +I  F +  
Sbjct: 605 EMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCS 664

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R   A   + +M+  G Q  IV+  +L+N +C+  + + A  L+D M + G E +   + 
Sbjct: 665 RFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYN 724

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            +I+GLCK  ++  A                                   + +F  ME  
Sbjct: 725 TVINGLCKNRDLNNA-----------------------------------LEIFYGMEKK 749

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             V D+ TY++++  LC + R   A++LL   +K  +        A++D     G   EA
Sbjct: 750 GIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEA 809

Query: 306 KKIQSKI 312
           K +  ++
Sbjct: 810 KNLYKEM 816



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T  I+L+GLC N    +A+  F  ++       +V YNI+I GLCKA +
Sbjct: 372 MVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADK 431

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           +  A  +   L   G  P+A TYT ++    +N   +   E+   MK  G
Sbjct: 432 VEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDG 481



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            T+NI++ G+C+N     A  +FR L + G   + + Y  +I GLC+ G  R A  +   +
Sbjct: 967  TYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRM 1026

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
             + G  P+   Y   +    R+    L  E++ A+
Sbjct: 1027 KEDGFMPSERIYDETL----RDHYTSLSAELIKAV 1057


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 155/315 (49%), Gaps = 11/315 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLR 62
           D+ P   T+N  L+GLCK   T  A  + R L+       P+ VT++ LI GLCK G++ 
Sbjct: 139 DVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQID 198

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +  ++   G+ PN ITY  ++    +  K +    ++ +M  KG T D   Y  ++
Sbjct: 199 EACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLV 258

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDI-----VSYNTLINLYCKEGKLEAAYLLLDEME 177
            AF K  R+ EA + +  M + G   ++     V++N LI   CK G  E A  L +EM 
Sbjct: 259 DAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMV 318

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            +  + D  T   LIDGLCKAG ++ AR  L+ M  +G   N+  YN +V  L K G+I+
Sbjct: 319 AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIE 378

Query: 238 HAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            A    E M     V DS TY S+V+ LC+A R   A +L+      G          +V
Sbjct: 379 EACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILV 438

Query: 294 DGLRHSGCRREAKKI 308
           DGL  SG   +A  +
Sbjct: 439 DGLWKSGKTEQAITV 453



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 162/339 (47%), Gaps = 44/339 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P T TF+ +++GLCK    D A  +F  +   G+VP ++TYN L+ GLCKA ++  A 
Sbjct: 177 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 236

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----FDGFGYCT 120
            +++ + D G  P+ ITY+ ++    +  +    LE+L  M  +G T      D   +  
Sbjct: 237 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNI 296

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IA   K G  ++A+   E+MV   +Q D++++  LI+  CK G++EAA  +LD M   G
Sbjct: 297 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 356

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYM----------------------------- 211
              +  T+  L+ GLCK+G I+ A   LE M                             
Sbjct: 357 VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDAL 416

Query: 212 ------NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
                    G+D +   YN +VD L K GK + AI V E M  K    DSFT+++    L
Sbjct: 417 QLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGL 476

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            ++  L    +LL   L  G+    +   +++D +  SG
Sbjct: 477 HRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSG 515



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 9/273 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           A +NI+L  LC+   T  AL +FRG + + G  P +VTYN +I GLCK+  L     + +
Sbjct: 2   ADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFE 61

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           EL + GH P+ +TY T++    +    +    +   M  +G   +   Y  +I    K+G
Sbjct: 62  ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG 121

Query: 130 RLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DK 185
           R+ EA + +++M      V  +I++YN+ ++  CK+     A  L+  +         D 
Sbjct: 122 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 181

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T + LIDGLCK G I  A    + M   G+  N+  YN +V+ L K  K++ A  + ES
Sbjct: 182 VTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIES 241

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    D  TYS +V   CKA R+  A +LL
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEALELL 274



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 155/348 (44%), Gaps = 48/348 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGLCK+      + +F  L + G  P++VTYN LI  LCKAG L  AR
Sbjct: 33  VAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEAR 92

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-------YTFDGF-- 116
            +  ++   G  PN +TY+ ++    +  +     E++  M RK         T++ F  
Sbjct: 93  RLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLD 152

Query: 117 GYC------------------------------TVIAAFVKIGRLKEATDYMEQMVTDGV 146
           G C                              T+I    K G++ EA    + M+  G 
Sbjct: 153 GLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGY 212

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
             ++++YN L+N  CK  K+E A+ +++ M  +G   D  T+++L+D  CKA  +  A  
Sbjct: 213 VPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALE 272

Query: 207 HLEYMNKIGFDSNL-----EAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSM 257
            L  M   G   N+       +N ++    K G  + A  +FE M  K    D  T+ ++
Sbjct: 273 LLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGAL 332

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           +  LCKA ++ +A  +L      GV        A+V GL  SG   EA
Sbjct: 333 IDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEA 380



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 138/283 (48%), Gaps = 9/283 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-----FVPELVTYNILIKGL 55
           M+   +TP   T++++++  CK    D AL +  G+   G      VP+ VT+NILI G 
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGA 301

Query: 56  CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
           CKAG    A  + +E+      P+ +T+  ++    +  + +   +IL  M   G   + 
Sbjct: 302 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNV 361

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  ++    K GR++EA  ++E+MV+ G   D ++Y +L+   C+  + + A  L+ E
Sbjct: 362 VTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSE 421

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           ++  G++ D  T+ IL+DGL K+G  + A   LE M   G   +   +      L + G 
Sbjct: 422 LKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGN 481

Query: 236 IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           +   + +   +  K    D+ T SS++  +C++ +L     ++
Sbjct: 482 LAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMI 524



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 119/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFNI++ G CK    + A  +F  +      P+++T+  LI GLCKAG++  AR
Sbjct: 287 LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAAR 346

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL  +G+ G  PN +TY  ++    ++ + +   + L  M   G   D   Y +++ A 
Sbjct: 347 DILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYAL 406

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R  +A   + ++ + G   D V+YN L++   K GK E A  +L+EM  +G + D 
Sbjct: 407 CRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDS 466

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T      GL ++GN+ G    L  +   G   +    + I+D + + GK+D    + + 
Sbjct: 467 FTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKE 526

Query: 246 ME 247
            E
Sbjct: 527 FE 528



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 13/246 (5%)

Query: 48  YNILIKGLCKAGRLRTARWILK-ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           YNI+++ LC+AG    A  I + E+   G AP  +TY TI+    ++     G+E+   +
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
             +G+  D   Y T+I +  K G L+EA      M + G   ++V+Y+ LIN  CK G++
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 167 EAAYLLLDEMEKQGFECDKYTHTI----LIDGLCKAGNIKGARLHLEYM--NKIGFDSNL 220
           + A  L+ EM ++   CD   + I     +DGLCK      A   +  +    +    + 
Sbjct: 124 DEARELIQEMTRK--SCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 181

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
             ++ ++D L K G+ID A +VF+ M     V +  TY+++V+ LCKA ++  A  ++ S
Sbjct: 182 VTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIES 241

Query: 277 CLKSGV 282
            +  GV
Sbjct: 242 MVDKGV 247



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 9/197 (4%)

Query: 118 YCTVIAAFVKIGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           Y  V+ +  + G    A + +  +M  DGV   IV+YNT+IN  CK   L A   L +E+
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            ++G   D  T+  LID LCKAG+++ AR     M+  G   N+  Y+ +++ L K G+I
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 237 DHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ- 289
           D A  + + M  K      +  TY+S +  LCK      A +L+ S     +R+      
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 183

Query: 290 -KAVVDGLRHSGCRREA 305
              ++DGL   G   EA
Sbjct: 184 FSTLIDGLCKCGQIDEA 200


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 161/296 (54%), Gaps = 7/296 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+++GL K    + A  +F GL KHG  P+ +TY + I GLCKAGR+  A  +
Sbjct: 291 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 350

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++ + G  P+ +++  ++    + ++      +LS M+ KG + +   + T+I    +
Sbjct: 351 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 410

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK---EGKLEAAYLLLDEMEKQGFECD 184
            G+ K+A    ++M+  GV+  +V+YN L++  CK   EG+++ A  L D M ++G   D
Sbjct: 411 AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPD 470

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T++ LIDGL KAG +  AR  L  M   G   N+  YN ++  L    K+D A+ +F 
Sbjct: 471 VVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFV 530

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +M     V D+ TY +++  LCK + +  A  L    L++GV        +++DGL
Sbjct: 531 AMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGL 586



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 174/348 (50%), Gaps = 46/348 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   T+N +L+G CK    D AL++F G  K GFVP++VTYN LI G CKA +
Sbjct: 111 MIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK 170

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ IL+ +      P+ +TY +++    +N +     E    +  KG++ +   Y T
Sbjct: 171 LDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVD---EARMLIVDKGFSPNVITYST 227

Query: 121 VIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTLIN-------------LY------ 160
           +I+   + + RL+ A   +E+MV +G + DIVSYN LI+             L+      
Sbjct: 228 LISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQ 287

Query: 161 ----------------CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
                            KE ++  A+ L   + K G E D  T+T+ IDGLCKAG ++ A
Sbjct: 288 GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDA 347

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
            L L+ M++ G   ++ ++N +++ L K+ ++D A  +   ME K    ++ ++++++  
Sbjct: 348 LLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICG 407

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL---RHSGCRREA 305
            C+A +   A       LK GV+        +VDGL   R  G  +EA
Sbjct: 408 QCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEA 455



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 162/295 (54%), Gaps = 8/295 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           +TFNI ++GLC+     +A  +F G++KHGF P  +TYN L+ GLC  GR+  A+ + + 
Sbjct: 51  STFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYER 110

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  +G++P+ +TY T++    +  K    L+I     ++G+  D   Y  +I  F K  +
Sbjct: 111 MIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK 170

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA   +++MV++ +  D+V+YN+L+N  CK G+++ A +L+ +   +GF  +  T++ 
Sbjct: 171 LDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYST 227

Query: 191 LIDGLCKA-GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           LI GLC+    ++ AR  LE M   G   ++ +YN ++  L ++  +  A+ +F S+  +
Sbjct: 228 LISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQ 287

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               +  TY+ ++  L K  R+  A +L    +K G+          +DGL  +G
Sbjct: 288 GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAG 342



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 148/288 (51%), Gaps = 7/288 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   ++N +++GL + +    AL++F  + + G+ PE+ TYNILI GL K  R
Sbjct: 249 MVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDR 308

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   L   G  P+AITYT  +    +  + +  L +L  M  KG   D   +  
Sbjct: 309 VNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNA 368

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    K  R+ EA   +  M   G   + +S+NTLI   C+ GK + A     EM K+G
Sbjct: 369 VINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRG 428

Query: 181 FECDKYTHTILIDGLCKA---GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            +    T+ IL+DGLCKA   G IK A    + M + G   ++  Y+ ++D LGK GK+D
Sbjct: 429 VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLD 488

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            A  +  +ME K    + +TY+S++  LC   ++  A +L ++ ++ G
Sbjct: 489 DARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKG 536



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 140/277 (50%), Gaps = 8/277 (2%)

Query: 6   LTPCTATFNIMLNGLCKN-RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
            +P   T++ +++GLC+  R  ++A ++   +  +G  P++V+YN LI GL +   +  A
Sbjct: 218 FSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEA 277

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +   +   G+ P   TY  ++    +  +     E+ S + + G   D   Y   I  
Sbjct: 278 LKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDG 337

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR+++A   ++ M   G   D+VS+N +IN  CKE +++ A +LL  ME +G   +
Sbjct: 338 LCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPN 397

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK---DGKIDHAIN 241
             +   LI G C+AG  K A    + M K G    +  YN +VD L K   +G+I  AI 
Sbjct: 398 AISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAIT 457

Query: 242 VFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           +F++M     V D  TYS+++  L KA +L  A +LL
Sbjct: 458 LFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLL 494



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T  I+L  L K+   + A R    L   G   ++ T+NI I GLC+A R+  A+ 
Sbjct: 13  SPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQT 71

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   +   G  PN ITY  ++       +      +   M + GY+ D   Y T++  F 
Sbjct: 72  VFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G+L EA    +  V  G   D+V+YN LIN +CK  KL+ A  +L  M  +    D  
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVV 191

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD-GKIDHAINVFES 245
           T+  L++GLCK G +  AR+ +  ++K GF  N+  Y+ ++  L ++  +++ A  + E 
Sbjct: 192 TYNSLVNGLCKNGRVDEARMLI--VDK-GFSPNVITYSTLISGLCRELRRLESARQLLEK 248

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M +     D  +Y++++H L + + +  A KL  S L+ G          ++DGL
Sbjct: 249 MVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGL 303



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 3/201 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA---GRLRT 63
           +P   +FN ++ G C+      A+  F+ + K G  P +VTYNIL+ GLCKA   GR++ 
Sbjct: 395 SPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 454

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +   + + G  P+ +TY+ ++    +  K      +L AM+ KG   + + Y ++I+
Sbjct: 455 AITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS 514

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
               + ++ EA +    MV  G   D ++Y T+I+  CK+  ++ A  L D   + G   
Sbjct: 515 GLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVP 574

Query: 184 DKYTHTILIDGLCKAGNIKGA 204
               +  LIDGLC    +  A
Sbjct: 575 TSGMYFSLIDGLCAVARVDEA 595



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 3/169 (1%)

Query: 8   PCTATFNIMLNGLCKNRY---TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           P   T+NI+++GLCK R       A+ +F  + + G VP++VTY+ LI GL KAG+L  A
Sbjct: 431 PTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDA 490

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +L  +   G  PN  TY +++       K    LE+  AM  KG   D   Y T+I+A
Sbjct: 491 RRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISA 550

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
             K   + +A    +  +  GV      Y +LI+  C   +++ A  LL
Sbjct: 551 LCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T++ +++GL K    D+A R+   ++  G +P + TYN LI GLC   ++  A  
Sbjct: 468 VPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALE 527

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   + + G  P+ ITY TI+    +       L +       G       Y ++I    
Sbjct: 528 LFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLC 587

Query: 127 KIGRLKEATDYME 139
            + R+ EA   ++
Sbjct: 588 AVARVDEALKLLQ 600


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 174/314 (55%), Gaps = 12/314 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+ PCT+    ++ G CK   T  A R+   ++  G VP+++TYN+LI G+C  GR   A
Sbjct: 118 DIIPCTS----LIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDA 173

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVI 122
             +L ++   G +P+ +T+  ++   F  RK  LG  +++L  M + G T +   Y  ++
Sbjct: 174 EKLLADMVRRGCSPSVVTFNILIN--FLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLL 231

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K  +++ A +Y+ +M + G   DIV+YNTL+   CK+GK++AA  LL+++  +G  
Sbjct: 232 HGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCS 291

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
               T+  +IDGL K G    A   L+ M   G   ++  Y+ +V  L ++GK+D AI  
Sbjct: 292 PVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKF 351

Query: 243 FESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F  +EV     ++ TY++++  LCKA++   A   L   ++ G +  +++   +++GL +
Sbjct: 352 FHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAY 411

Query: 299 SGCRREAKKIQSKI 312
            G  +EA ++ +++
Sbjct: 412 EGLAKEALELLNEL 425



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 130/298 (43%), Gaps = 39/298 (13%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N  L+ L +N   +   R    +   G +P+++    LI+G CK G+ R A  I++ + D
Sbjct: 88  NNNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIED 147

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           SG  P+ ITY  ++                             G C+        GR  +
Sbjct: 148 SGAVPDVITYNVLIS----------------------------GMCST-------GRWMD 172

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +  MV  G    +V++N LIN  C++G L  A  +L++M K G   +  ++  L+ 
Sbjct: 173 AEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLH 232

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS-- 251
           G CK   ++ A  +L  M   G   ++  YN ++  L KDGK+D A+ +   +  K    
Sbjct: 233 GFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSP 292

Query: 252 --FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
              TY++++  L K  +   A+KLL      G++       ++V GL   G   EA K
Sbjct: 293 VLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIK 350



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 4/226 (1%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           RN + + G   L +M  +G   D     ++I  F KIG+ ++AT  ME +   G   D++
Sbjct: 96  RNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVI 155

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YN LI+  C  G+   A  LL +M ++G      T  ILI+ LC+ G +  A   LE M
Sbjct: 156 TYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKM 215

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
            K G   N  +YN ++    K+ K++ AI     M  +    D  TY++++  LCK  ++
Sbjct: 216 PKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKV 275

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            +A +LL      G   +      V+DGL   G   +A K+  ++R
Sbjct: 276 DAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMR 321



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 70/140 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +++GL K   TD A ++   ++  G  P+++TY+ L+ GL + G++  A  
Sbjct: 291 SPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIK 350

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              +L   G  PNAITY  IM    + RK    ++ L+ M ++G       Y  +I    
Sbjct: 351 FFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLA 410

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G  KEA + + ++   GV
Sbjct: 411 YEGLAKEALELLNELCLRGV 430



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++ ++ GL +    D A++ F  L+  G  P  +TYN ++ GLCKA +   A 
Sbjct: 325 LKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAI 384

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
             L  +   G  P   +YT +++        K  LE+L+ +  +G
Sbjct: 385 DFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRG 429


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 162/293 (55%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG+CK    D A++    +  +G  P ++T+NI+++ +C  GR   A  +
Sbjct: 276 PDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERL 335

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G +P+ +T+  ++    R R     +++L  M + G   +   Y  ++  F +
Sbjct: 336 LSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQ 395

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A +Y+E MV+ G   DIV+YNTL+   CK+GK++AA  +L+++  +G      T
Sbjct: 396 EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLIT 455

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +IDGL K G  + A   LE M + G   ++  Y+ ++  LG++GK+D AI +F  ME
Sbjct: 456 YNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDME 515

Query: 248 ---VKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              +K S  TY++++  LCKA++   A   L   ++ G +  ++    +++G+
Sbjct: 516 GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 154/311 (49%), Gaps = 7/311 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N+++ G CK+   D AL +   L++    P++VTYN +++ LC +G+L+ A  
Sbjct: 173 VPDVITYNVLIGGYCKSGEIDKALEV---LERMSVAPDVVTYNTILRSLCDSGKLKEAME 229

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L         P+ ITYT +++    +      +++L  M++KG   D   Y  +I    
Sbjct: 230 VLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 289

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GRL EA  ++  M + G + +++++N ++   C  G+   A  LL +M ++G      
Sbjct: 290 KEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVV 349

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  ILI+ LC+   +  A   LE M K G   N  +YN ++    ++ K+D AI   E M
Sbjct: 350 TFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 409

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             +    D  TY++++  LCK  ++ +A ++L      G   +      V+DGL   G  
Sbjct: 410 VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 469

Query: 303 REAKKIQSKIR 313
             A ++  ++R
Sbjct: 470 EYAVELLEEMR 480



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 116/222 (52%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TFNI++N LC+ R    A+ +   + KHG VP  ++YN L+ G C+  ++  A  
Sbjct: 345 SPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIE 404

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L+ +   G  P+ +TY T++    ++ K    +EIL+ +  KG +     Y TVI    
Sbjct: 405 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLT 464

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G+ + A + +E+M   G++ DI++Y+TL+    +EGK++ A  +  +ME    +    
Sbjct: 465 KVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAV 524

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           T+  ++ GLCKA     A   L YM + G       Y  +++
Sbjct: 525 TYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIE 566



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 42/300 (14%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           NI L  L +N   +  L+    +   G +P+++    LI+G C++G+ + A  I++ L +
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           SG  P+ ITY  ++    ++ +    LE+L   +R     D   Y T++ +    G+LKE
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEVL---ERMSVAPDVVTYNTILRSLCDSGKLKE 226

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A + +++ +      D+++Y  LI   C +  +  A  LLDEM K+G + D  T+ +LI+
Sbjct: 227 AMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLIN 286

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK------------------ 235
           G+CK G +  A   L  M   G   N+  +N I+  +   G+                  
Sbjct: 287 GICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSP 346

Query: 236 -----------------IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
                            +  AI+V E M     V +S +Y+ ++H  C+ K++  A + L
Sbjct: 347 SVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYL 406



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 98/189 (51%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P + ++N +L+G C+ +  D A+     +   G  P++VTYN L+  LCK G++  A  
Sbjct: 380 VPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVE 439

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL +L   G +P  ITY T++    +  K +  +E+L  M+RKG   D   Y T++    
Sbjct: 440 ILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLG 499

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G++ EA      M    ++   V+YN ++   CK  +   A   L  M ++G +  + 
Sbjct: 500 REGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEA 559

Query: 187 THTILIDGL 195
           T+TILI+G+
Sbjct: 560 TYTILIEGI 568



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
           +F+ F     +   V+ G L+E   ++E+M+  G   D+++  +LI  +C+ GK + A  
Sbjct: 103 SFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATR 162

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
           +++ +E  G   D  T+ +LI G CK+G I  A   LE + ++    ++  YN I+  L 
Sbjct: 163 IMEILENSGAVPDVITYNVLIGGYCKSGEIDKA---LEVLERMSVAPDVVTYNTILRSLC 219

Query: 232 KDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
             GK+  A+ V +    +    D  TY+ ++   C    +  A KLL    K G +    
Sbjct: 220 DSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVV 279

Query: 288 AQKAVVDGLRHSGCRREAKK 307
               +++G+   G   EA K
Sbjct: 280 TYNVLINGICKEGRLDEAIK 299


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 170/311 (54%), Gaps = 8/311 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG+CK    D A++    +  +G  P ++T+NI+++ +C  GR   A  +
Sbjct: 49  PDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKL 108

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAF 125
           L E+   G +P+ +T+  ++   F  RK  LG  ++IL  M   G T +   Y  ++  F
Sbjct: 109 LTEMVRKGCSPSVVTFNILIN--FLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGF 166

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++  A  Y+E MV+ G   DIV+YNT++   CK+GK++AA  LL+++  +G     
Sbjct: 167 CKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVL 226

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +IDGL K G    A   L  M   G   ++  Y+ ++  L ++GK++ AI  F  
Sbjct: 227 ITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHD 286

Query: 246 ME---VK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           +E   VK ++FTY+S++  LCKA++   A   L   +  G +  + +   +++G+ + G 
Sbjct: 287 VEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGL 346

Query: 302 RREAKKIQSKI 312
            +EA ++ +++
Sbjct: 347 AKEALELLNEL 357



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 121/240 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TFNI++N LC+      A+ +   +  HG  P  ++YN L+ G CK  ++  A  
Sbjct: 118 SPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQ 177

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L+ +   G  P+ +TY T++    ++ K    +E+L+ +  KG +     Y TVI    
Sbjct: 178 YLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 237

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G+  +A + + +M   G++ D+++Y++LI    +EGK+E A     ++E  G + + +
Sbjct: 238 KVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAF 297

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  ++ GLCKA     A   L YM   G      +Y  +++ +  +G    A+ +   +
Sbjct: 298 TYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNEL 357



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 127/284 (44%), Gaps = 40/284 (14%)

Query: 34  RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93
           R L+K  + P+++TY ILI+  C    +  A  +L E+G  G  P+ +TY  ++      
Sbjct: 6   RQLEKECY-PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVN----- 59

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
                                  G C       K GRL EA  ++  M + G Q +++++
Sbjct: 60  -----------------------GMC-------KEGRLDEAIKFLNSMPSYGSQPNVITH 89

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           N ++   C  G+   A  LL EM ++G      T  ILI+ LC+ G +  A   LE M  
Sbjct: 90  NIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPT 149

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G   N  +YN ++    K+ K+D AI   E M  +    D  TY++M+  LCK  ++ +
Sbjct: 150 HGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDA 209

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           A +LL      G   +      V+DGL   G   +A ++  ++R
Sbjct: 210 AVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMR 253



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ML  LCK+   D A+ +   L   G  P L+TYN +I GL K G+   A  +
Sbjct: 189 PDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVEL 248

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY++++    R  K +  ++    ++  G   + F Y +++    K
Sbjct: 249 LHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCK 308

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
             +   A D++  M++ G +   VSY  LI     EG  + A  LL+E+  +G
Sbjct: 309 AQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           +E+L     K    D   Y  +I A      + +A   +++M + G + D+V+YN L+N 
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CKEG+L+ A   L+ M   G + +  TH I++  +C  G    A   L  M + G   +
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           +  +N +++ L + G +  AI++ E M       +S +Y+ ++H  CK K++  A + L
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYL 179



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 70/140 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +++GL K   TD A+ +   ++  G  P+++TY+ LI GL + G++  A  
Sbjct: 223 SPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIK 282

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              ++   G  PNA TY +IM    + ++    ++ L+ M  KG       Y  +I    
Sbjct: 283 FFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIA 342

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G  KEA + + ++ + GV
Sbjct: 343 NEGLAKEALELLNELCSRGV 362


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 155/309 (50%), Gaps = 10/309 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALR--MFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           ++P T TF+ +++GLCK   TD A    M  G    G+VP +VTYN L+ GLCKA ++  
Sbjct: 221 VSPDTVTFSTLIDGLCKCGQTDEACNDDMIAG----GYVPNVVTYNALVNGLCKADKMER 276

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +++ + D G  P+ ITY+ ++    +  +    LE+L  M  +G T +   + ++I 
Sbjct: 277 AHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIID 336

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K  R  EA     Q+    +  D V++N LI   CK G  E A  L +EM  +  + 
Sbjct: 337 GLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQP 396

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T   LIDGLCKAG ++ AR  L+ M  +G   N+  YN +V  L K G+I+      
Sbjct: 397 DVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFL 456

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M     V +S TY S+V+ LC+A R   A +L+      G          +VDGL  S
Sbjct: 457 EEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKS 516

Query: 300 GCRREAKKI 308
           G   +A  +
Sbjct: 517 GKTEQAITV 525



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 151/333 (45%), Gaps = 39/333 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI G   P   T+N ++NGLCK    + A  M   +   G  P+++TY++L+   CKA R
Sbjct: 249 MIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 308

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L  +   G  PN +T+ +I+    ++ +     +I   +  +    D   +  
Sbjct: 309 VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNI 368

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IA   K G  ++A+   E+MV   +Q D++++  LI+  CK G++EAA  +LD M   G
Sbjct: 369 LIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 428

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYM----------------------------- 211
              +  T+ +L+ GLCK+G I+     LE M                             
Sbjct: 429 VPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDAL 488

Query: 212 ------NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
                    G+D +   YN +VD L K GK + AI V E M  K    DSFT+++    L
Sbjct: 489 QLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGL 548

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            ++  L    +LL   L  G+    +   +++D
Sbjct: 549 HRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 154/346 (44%), Gaps = 45/346 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGLCK+      + +F  L K G  P++VTYN LI  LCKAG L  AR
Sbjct: 77  VAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEAR 136

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-------YTFDGF-- 116
            +   +   G  PN +TY+ ++    +  +     E++  M RK         T++ F  
Sbjct: 137 RLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLD 196

Query: 117 GYC------------------------------TVIAAFVKIGRLKEATDYMEQMVTDGV 146
           G C                              T+I    K G+  EA +  + M+  G 
Sbjct: 197 GLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGY 254

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
             ++V+YN L+N  CK  K+E A+ +++ M  +G   D  T+++L+D  CKA  +  A  
Sbjct: 255 VPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALE 314

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGK----IDHAINVFESMEVKDSFTYSSMVHNLC 262
            L  M   G   N+  +N I+D L K  +       A+ V+  M V D  T++ ++   C
Sbjct: 315 LLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGAC 374

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           KA     AS L    +   ++       A++DGL  +G    A+ I
Sbjct: 375 KAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDI 420



 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 149/311 (47%), Gaps = 11/311 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           A +NI+L  LC+   T  AL +FRG + + G  P +VTYN +I GLCK+  L     + +
Sbjct: 46  ADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFE 105

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           EL   GH P+ +TY T++    +    +    +   M  +G   +   Y  +I    K+G
Sbjct: 106 ELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVG 165

Query: 130 RLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DK 185
           R+ EA + +++M      V  +I++YN+ ++  CK+     A  L+  +         D 
Sbjct: 166 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 225

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T + LIDGLCK G    A    + M   G+  N+  YN +V+ L K  K++ A  + ES
Sbjct: 226 VTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIES 283

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D  TYS +V   CKA R+  A +LL      G         +++DGL  S  
Sbjct: 284 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDR 343

Query: 302 RREAKKIQSKI 312
             EA +I  ++
Sbjct: 344 SGEAFQIALQV 354


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 176/318 (55%), Gaps = 5/318 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI G   P   TFN +++G CK    D+A ++   +   G  P +VTY+ LI GLCK+ +
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +L+E+  SG  P+A TY+ ++    +  K +   ++L  M   G T D   Y +
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSS 237

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I AF K G+L EA   +++M       D+V+YNT+I+  CK GK+  A ++LD+M++ G
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG 297

Query: 181 -FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D  T++ +I+GLCK+  +  A+  L+ M K G + ++  Y  I+D L K G+++ A
Sbjct: 298 DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA 357

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             + + M+      +  TY++++  LCKA+++  A +++     +G          +V+G
Sbjct: 358 EYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 417

Query: 296 LRHSGCRREAKKIQSKIR 313
           L  SG  +EA+++  +++
Sbjct: 418 LCVSGRIKEAQQLVQRMK 435



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 159/313 (50%), Gaps = 5/313 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N++++ LCK      A  + + + + GF P ++T+N L+ G CK G +  AR +
Sbjct: 90  PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 149

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G  PN +TY+ ++    +++K+    E+L  MK  G T D F Y  +I    K
Sbjct: 150 LGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCK 209

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +++EA   + +M   G   D+V Y+++I+ +CK GKL  A   L EM KQ    D  T
Sbjct: 210 ADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT 269

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +  +IDGLCK G I  A++ L+ M + G    ++  Y+ +++ L K   +  A  + + M
Sbjct: 270 YNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRM 329

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                  D  TY++++  LCK  RL  A  LL    ++G          ++ GL  +   
Sbjct: 330 CKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKV 389

Query: 303 REAKKIQSKIRMA 315
            EA+++  ++R A
Sbjct: 390 DEAERVMEEMRNA 402



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 149/304 (49%), Gaps = 5/304 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++    + +  + A+++   +++ G  P LVTYN+L+  LCK   +  A+ +
Sbjct: 55  PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 114

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +K++ + G APN +T+ +++    +        ++L  M  KG   +   Y  +I    K
Sbjct: 115 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 174

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +  EA + +E+M   GV  D  +Y+ LI+  CK  K+E A  +L  M   G   D   
Sbjct: 175 SQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 234

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ +I   CK+G +  A+  L+ M K     ++  YN ++D L K GKI  A  + + M+
Sbjct: 235 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQ 294

Query: 248 -----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                + D  TYS++++ LCK+  L  A KLL    K+G          ++DGL   G  
Sbjct: 295 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRL 354

Query: 303 REAK 306
            EA+
Sbjct: 355 EEAE 358



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 131/262 (50%), Gaps = 7/262 (2%)

Query: 56  CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
           C AG L  A  +L+E+  +G AP+A T+T I+            ++ L +M   G   + 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNV 57

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  +IAAF +  +L+EA   +E+M   G   ++V+YN L++  CK   + AA  ++ +
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M + GF  +  T   L+DG CK GN+  AR  L  M   G   N+  Y+ ++D L K  K
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
              A  V E M+      D+FTYS+++H LCKA ++  A ++L     SG         +
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSS 237

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           ++     SG   EA+K   ++R
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEMR 259



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 7/289 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL +   ++  GF P+  T+  +I  +  AG L  A   L+ +G     PN +TYT ++ 
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD---PNVVTYTALIA 65

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R +K +  +++L  M+ +G   +   Y  ++ A  K+  +  A D +++M+  G   
Sbjct: 66  AFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAP 125

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           +++++N+L++ +CK G ++ A  LL  M  +G   +  T++ LIDGLCK+     A+  L
Sbjct: 126 NVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVL 185

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKA 264
           E M   G   +   Y+ ++  L K  KI+ A  +   M       D   YSS++H  CK+
Sbjct: 186 EEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKS 245

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            +L  A K L    K            V+DGL   G   EA+ I  +++
Sbjct: 246 GKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQ 294



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 3/208 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTAR 65
           +P   T+N +++GLCK      A  +   +Q+ G V P++VTY+ +I GLCK+  L  A+
Sbjct: 264 SPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQ 323

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G  P+ +TYTTI+    +  + +    +L  MKR G   +   Y T+I+  
Sbjct: 324 KLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGL 383

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-- 183
            K  ++ EA   ME+M   G   ++V+YNT++N  C  G+++ A  L+  M+    EC  
Sbjct: 384 CKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSP 443

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYM 211
           D  T+  +++ L  +  ++ A   LE M
Sbjct: 444 DAATYRTIVNALMSSDLVQEAEQLLEQM 471


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 157/310 (50%), Gaps = 4/310 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG CK+   D   R+ R + ++   P++ TY++LI GLCK G+L  A 
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++       +  LG+EI   M RKG   D   Y T+I   
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G L+EA   + +M   G++ D  +Y  LI+  CKEG LE+A  +  EM K+G E D 
Sbjct: 376 CKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDN 435

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T LI G C+ G +  A   L  M + G   +   Y  ++    K G +     + + 
Sbjct: 436 VAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKE 495

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+    V    TY+ +++ LCK  ++ +A+ LL + L  GV         +++G    G 
Sbjct: 496 MQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGN 555

Query: 302 RREAKKIQSK 311
           R +  K+QS+
Sbjct: 556 REDFDKLQSE 565



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 137/285 (48%), Gaps = 4/285 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           + + L K   T  A   +  +   G+ P++  +N+L+  LCK  ++  A+ +  E+G  G
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG 255

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P  +++ T++    ++     G  +   M       D F Y  +I    K G+L +A 
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
               +M   G+  + V++ TLIN +C  G+ +    +  +M ++G + D  T+  LI+GL
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G+++ A+  +  M + G   +   Y  ++D   K+G ++ A+ + + M  +    D+
Sbjct: 376 CKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDN 435

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             +++++   C+  ++  A + L   L++G++   +    V+ G 
Sbjct: 436 VAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGF 480



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 136/309 (44%), Gaps = 4/309 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F++++N    + Y  +A++ FR ++KH       +   L   L K      A    +E+ 
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G+ P+   +  +M    +  K      +   + ++G       + T+I  + K G L 
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +       M+ + V  D+ +Y+ LIN  CKEG+L+ A  L  EM  +G   +  T T LI
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           +G C  G         + M + G   ++  YN +++ L K G +  A  +   M  +   
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D FTY+ ++   CK   L SA ++    +K G+ +   A  A++ G    G   EA++ 
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 309 QSKIRMAKI 317
             ++  A I
Sbjct: 458 LREMLEAGI 466



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 4/183 (2%)

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
           S ++ +G       +  ++ A+   G   +A      +    +Q+   S   L +   K 
Sbjct: 144 SVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKL 203

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
                A+   +E+   G+  D     +L+  LCK   I  A+L    + K G    + ++
Sbjct: 204 NLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSF 263

Query: 224 NCIVDRLGKDGKIDHAINV----FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           N +++   K G +D    +     E+    D FTYS +++ LCK  +L  A+KL L    
Sbjct: 264 NTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCD 323

Query: 280 SGV 282
            G+
Sbjct: 324 RGL 326


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 167/309 (54%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG+C+    D+A+   + L  HG  P  V+YNI++KGLC A R   A  +
Sbjct: 224 PDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKL 283

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G+ PN +T+  ++    R    +  +E+L  + + G T +   Y  ++ AF K
Sbjct: 284 MAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCK 343

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A  ++E MV+ G   DIVSYNTL+   C+ G+++AA  LL +++ +G      +
Sbjct: 344 QKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLIS 403

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---E 244
           +  +IDGL KAG  K A   L  M   G   ++  Y+ I   L ++ +I+ AI  F   +
Sbjct: 404 YNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQ 463

Query: 245 SMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            M ++ ++  Y++++  LCK +   +A  L +  + +G    +S    +++GL + G  +
Sbjct: 464 DMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVK 523

Query: 304 EAKKIQSKI 312
           EA+++  ++
Sbjct: 524 EARELLGEL 532



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 160/341 (46%), Gaps = 45/341 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC A    ++  LC +  T  A R+    +     P+++ YN ++ G C  G+L  AR +
Sbjct: 96  PCAA----LIKKLCASGRTAEARRVLAACE-----PDVMAYNAMVAGYCVTGQLDAARRL 146

Query: 68  LKEL-------------------GDSGHA-------------PNAITYTTIMKCCFRNRK 95
           + ++                   G +G+A             P+ +TYT +++   +   
Sbjct: 147 VADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSG 206

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
           YK  +++L  M+ KG   D   Y  V+    + GR+ +A ++++ + + G + + VSYN 
Sbjct: 207 YKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNI 266

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           ++   C   + E A  L+ EM ++G+  +  T  +LI  LC+ G ++ A   L+ + K G
Sbjct: 267 VLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYG 326

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              N  +YN I+    K  K+D A+   E M  +    D  +Y++++  LC+   + +A 
Sbjct: 327 CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAV 386

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +LL      G   +  +   V+DGL  +G  +EA ++ +++
Sbjct: 387 ELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEM 427



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 101/199 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP + ++N +L+  CK +  D A+     +   G  P++V+YN L+  LC+ G +  A  
Sbjct: 328 TPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVE 387

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L +L D G  P  I+Y T++    +  K K  LE+L+ M  KG   D   Y T+ +   
Sbjct: 388 LLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLC 447

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  R++EA     ++   G++ + V YN ++   CK  +   A  L   M   G   ++ 
Sbjct: 448 REDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNES 507

Query: 187 THTILIDGLCKAGNIKGAR 205
           T+TILI+GL   G +K AR
Sbjct: 508 TYTILIEGLTYEGLVKEAR 526



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L  LC+    D A+ +   L+  G  P L++YN +I GL KAG+ + A  +
Sbjct: 364 PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALEL 423

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY+TI     R  + +  +     ++  G   +   Y  ++    K
Sbjct: 424 LNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCK 483

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
                 A D    M+++G   +  +Y  LI     EG ++ A  LL E+  +G 
Sbjct: 484 RRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGV 537



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   ++N +++GL K   T  AL +   +   G  P+++TY+ +  GLC+  R+  A  
Sbjct: 398 TPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIR 457

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              ++ D G  PN + Y  I+    + R+    +++   M   G   +   Y  +I    
Sbjct: 458 AFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLT 517

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G +KEA + + ++ + GV
Sbjct: 518 YEGLVKEARELLGELCSRGV 537



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T++ + +GLC+    + A+R F  +Q  G  P  V YN ++ GLCK   
Sbjct: 427 MVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRE 486

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
              A  +   +  +G  PN  TYT +++        K   E+L  +  +G    G 
Sbjct: 487 THNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKGL 542


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 167/309 (54%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG+C+    D+A+   + L  +G  P  V+YNI++KGLC A R   A  +
Sbjct: 220 PDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKL 279

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G  PN +T+  ++    R    +  +EIL  + + G T +   Y  ++ AF K
Sbjct: 280 MAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCK 339

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A  ++E MV+ G   DIVSYNTL+   C+ G+++AA  LL +++ +G      +
Sbjct: 340 QKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLIS 399

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---E 244
           +  +IDGL KAG  + A   L  M   G   ++  Y+ I   L ++G+I+ AI  F   +
Sbjct: 400 YNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQ 459

Query: 245 SMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            M ++ ++  Y++++  LCK +   SA  L    + +G    +S    +++GL + G  +
Sbjct: 460 DMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVK 519

Query: 304 EAKKIQSKI 312
           EA+++ +++
Sbjct: 520 EAREMMAEL 528



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 136/279 (48%), Gaps = 18/279 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC A    ++  LC +  T  A R+    +     P++++YN ++ G C  G+L  AR +
Sbjct: 92  PCAA----LIKKLCASGRTAEARRVLASCE-----PDVMSYNAMVAGYCVTGQLDNARRL 142

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  +      P+  TY T+++  C R R     L +L  M R+G   D   Y  ++ A  
Sbjct: 143 VAAM---PMEPDTYTYNTLIRGLCGRGRTDN-ALAVLDDMLRRGCVPDVVTYTILLEATC 198

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K    K+A   +++M   G   DIV+YN ++N  C+EG+++ A   L  +   G E +  
Sbjct: 199 KRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTV 258

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++ I++ GLC A   + A   +  M++ G   N+  +N ++  L + G ++ A+ + + +
Sbjct: 259 SYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQI 318

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                  +S +Y+ ++H  CK K++  A   +   + SG
Sbjct: 319 PKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSG 357



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 102/199 (51%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP + ++N +L+  CK +  D A+     +   G  P++V+YN L+  LC+ G +  A  
Sbjct: 324 TPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVE 383

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L +L D G  P  I+Y T++    +  K +  LE+L+ M  KG   D   Y T+ +   
Sbjct: 384 LLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLC 443

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR++EA     ++   G++ + V YN ++   CK     +A  L   M   G   ++ 
Sbjct: 444 REGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNES 503

Query: 187 THTILIDGLCKAGNIKGAR 205
           T+TILI+GL   G +K AR
Sbjct: 504 TYTILIEGLAYEGLVKEAR 522



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   ++N +++GL K   T+ AL +   +   G  P+++TY+ +  GLC+ GR+  A  
Sbjct: 394 TPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIK 453

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              ++ D G  PN + Y  I+    + R     +++ + M   G   +   Y  +I    
Sbjct: 454 AFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLA 513

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G +KEA + M ++ + GV
Sbjct: 514 YEGLVKEAREMMAELCSRGV 533


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 149/269 (55%), Gaps = 2/269 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    +N +++G CK    D    +F  +   G VP + TYNI++ GLCK G++  A  
Sbjct: 284 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 343

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L+ +  +G  P+ ++Y  I+   F+  K K   ++L  M + G   D   Y T++A F 
Sbjct: 344 FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFC 403

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK- 185
           K  R  +A   ++ M+  GV  D V+YNTLI+   +  +L  AY L+ EM + G      
Sbjct: 404 KEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSAC 463

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +ID LCK G +K A L +++M   G ++N   YN  +DRL K+G++D A ++   
Sbjct: 464 TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE 523

Query: 246 ME-VKDSFTYSSMVHNLCKAKRLPSASKL 273
           M+ ++D  +Y++++  LCKA++L  ASKL
Sbjct: 524 MDTLRDEVSYTTVIIGLCKAEQLDRASKL 552



 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 156/301 (51%), Gaps = 15/301 (4%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N +++GLCK   T+ A  +   L   GFVP++VTY I++ GLCK GRL  A  
Sbjct: 147 TPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALK 206

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++ +   G  P+ ITYT +M+   R  +      I   M  K  T D   Y +++  + 
Sbjct: 207 MVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYC 266

Query: 127 KIGRLKEATDYMEQMVTDGVQ----LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           K  R KEA     Q V DG++    +D+  YN L++ YCKEG+L+    + ++M  +G  
Sbjct: 267 KSSRTKEA-----QKVVDGIRGTPYIDV--YNALMDGYCKEGRLDEIPNVFEDMACRGCV 319

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+ I++DGLCK G +  A   LE M+  G   ++ +YN I+D L K  K   A  V
Sbjct: 320 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 379

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            + M       D+ TY++++   CK +R   A  +L + +K+GV         ++ GL  
Sbjct: 380 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 439

Query: 299 S 299
           +
Sbjct: 440 T 440



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 144/273 (52%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI+++GLCK   TD A  M   +   G  P+ VT+N ++ GLCKAG+   A 
Sbjct: 6   VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAH 65

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  + +    P+  TY T++    + +       ++      G+  D   Y  +    
Sbjct: 66  SLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGL 125

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ EA + +++M  +G   ++V+YNTLI+  CK  K E AY LL+ +   GF  D 
Sbjct: 126 CKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDV 185

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+TI++DGLCK G +  A   +E M K G   ++  Y  +++ L + G++D A ++F+ 
Sbjct: 186 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE 245

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    D+  Y S+V+  CK+ R   A K++
Sbjct: 246 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV 278



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 141/282 (50%), Gaps = 4/282 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + +    P++ TYNILI GLCKA +   A  +L E+ D G  P+ +T+ +IM    +  K
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
           ++    +L+ M  +        Y T+I+   K   +  A   +++ V+ G   D+V+Y+ 
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L +  CK G+++ A+ L+ EM   G   +  T+  LIDGLCKA   + A   LE +   G
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
           F  ++  Y  IVD L K+G++D A+ + E M          TY++++  LC+  R+  A 
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAH 240

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            +    +         A  ++V+G   S   +EA+K+   IR
Sbjct: 241 HIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIR 282



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 161/381 (42%), Gaps = 73/381 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C    P   T+NI+++GLCK+   D A      +   G VP++V+YNI+I GL KA +
Sbjct: 313 MACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 372

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + AR +L ++  +G  P+A+TY T+M    +  ++   + IL  M + G   D   Y T
Sbjct: 373 PKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNT 432

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDG----------------------------------- 145
           +I+   +  RL +A + M +M+ +G                                   
Sbjct: 433 LISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH 492

Query: 146 -VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-------------------------- 178
            V+ + V+YN  I+  CKEG+L+ A  LL EM+                           
Sbjct: 493 GVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKL 552

Query: 179 -------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
                  +G     +T  +LID   K   +  A   LE M + G   ++  YN ++  L 
Sbjct: 553 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLC 612

Query: 232 KDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
           K  K+D A  +F+ M V+     S +Y+ +++ LC   R   A ++L     S   I   
Sbjct: 613 KLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDL 672

Query: 288 AQKAVVDGLRHSGCRREAKKI 308
             + +   LR  G   EA ++
Sbjct: 673 KCRKLYLALRGQGRGEEAAEL 693



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 1/166 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           ++  ++ GLCK    D A ++ R +    G      T+N+LI    K  RL  A  +L+ 
Sbjct: 532 SYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLEL 591

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G +P+ ITY  ++ C  +  K     E+   M  +G       Y  +I      GR
Sbjct: 592 MVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGR 651

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            KEA   +E+M +   ++D +    L      +G+ E A  LL  M
Sbjct: 652 GKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 2/140 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN++++   K +  D AL +   + + G  P ++TYN++I  LCK  ++  A  +  E+
Sbjct: 568 TFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEM 627

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G   ++++YT ++       + K  L++L  M       D      +  A    GR 
Sbjct: 628 AVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRG 687

Query: 132 KEATDYMEQMVT--DGVQLD 149
           +EA + + +M T  D + LD
Sbjct: 688 EEAAELLRRMTTKMDSLSLD 707


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 149/269 (55%), Gaps = 2/269 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    +N +++G CK    D    +F  +   G VP + TYNI++ GLCK G++  A  
Sbjct: 535 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 594

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L+ +  +G  P+ ++Y  I+   F+  K K   ++L  M + G   D   Y T++A F 
Sbjct: 595 FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFC 654

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK- 185
           K  R  +A   ++ M+  GV  D V+YNTLI+   +  +L  AY L+ EM + G      
Sbjct: 655 KEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSAC 714

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +ID LCK G +K A L +++M   G ++N   YN  +DRL K+G++D A ++   
Sbjct: 715 TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE 774

Query: 246 ME-VKDSFTYSSMVHNLCKAKRLPSASKL 273
           M+ ++D  +Y++++  LCKA++L  ASKL
Sbjct: 775 MDTLRDEVSYTTVIIGLCKAEQLDRASKL 803



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 156/301 (51%), Gaps = 15/301 (4%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N +++GLCK   T+ A  +   L   GFVP++VTY I++ GLCK GRL  A  
Sbjct: 398 TPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALK 457

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++ +   G  P+ ITYT +M+   R  +      I   M  K  T D   Y +++  + 
Sbjct: 458 MVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYC 517

Query: 127 KIGRLKEATDYMEQMVTDGVQ----LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           K  R KEA     Q V DG++    +D+  YN L++ YCKEG+L+    + ++M  +G  
Sbjct: 518 KSSRTKEA-----QKVVDGIRGTPYIDV--YNALMDGYCKEGRLDEIPNVFEDMACRGCV 570

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+ I++DGLCK G +  A   LE M+  G   ++ +YN I+D L K  K   A  V
Sbjct: 571 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 630

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            + M       D+ TY++++   CK +R   A  +L + +K+GV         ++ GL  
Sbjct: 631 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 690

Query: 299 S 299
           +
Sbjct: 691 T 691



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 144/273 (52%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI+++GLCK   TD A  M   +   G  P+ VT+N ++ GLCKAG+   A 
Sbjct: 257 VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAH 316

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  + +    P+  TY T++    + +      +++      G+  D   Y  +    
Sbjct: 317 SLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGL 376

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ EA + +++M   G   ++V+YNTLI+  CK  K E AY LL+ +   GF  D 
Sbjct: 377 CKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDV 436

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+TI++DGLCK G +  A   +E M K G   ++  Y  +++ L + G++D A ++F+ 
Sbjct: 437 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE 496

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    D+  Y S+V+  CK+ R   A K++
Sbjct: 497 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV 529



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 157/311 (50%), Gaps = 4/311 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +N +++G C+    D AL   + + +    P++ TYNILI GLCKA +   A  
Sbjct: 223 SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASE 282

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E+ D G  P+ +T+ +IM    +  K++    +L+ M  +        Y T+I+   
Sbjct: 283 MLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLC 342

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K   +  A D +++ V+ G   D+V+Y+ L +  CK G+++ A+ L+ EM  +G   +  
Sbjct: 343 KQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLV 402

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LIDGLCKA   + A   LE +   GF  ++  Y  IVD L K+G++D A+ + E M
Sbjct: 403 TYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM 462

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                     TY++++  LC+  R+  A  +    +         A  ++V+G   S   
Sbjct: 463 LKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRT 522

Query: 303 REAKKIQSKIR 313
           +EA+K+   IR
Sbjct: 523 KEAQKVVDGIR 533



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 146/280 (52%), Gaps = 9/280 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C    P   T+NI+++GLCK+   D A      +   G VP++V+YNI+I GL KA +
Sbjct: 564 MACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 623

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + AR +L ++  +G  P+A+TY T+M    +  ++   + IL  M + G   D   Y T
Sbjct: 624 PKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNT 683

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDI-VSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I+   +  RL +A + M +M+ +G  +    +YNT+I+  CKEG L+ A LL+D M   
Sbjct: 684 LISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH 743

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E +  T+ I ID LCK G +  A   L  M+ +    +  +Y  ++  L K  ++D A
Sbjct: 744 GVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL---RDEVSYTTVIIGLCKAEQLDRA 800

Query: 240 INVFESM-EVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
             +   M  VK     S T++ ++    K KRL  A  LL
Sbjct: 801 SKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLL 840



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 147/304 (48%), Gaps = 8/304 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P + T+++++  LC+    D A  M    +  GF PE+  Y IL +  CK GR
Sbjct: 151 MLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGR 210

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  I + +     +P+AI Y  I+    R       LE L  M  +    D F Y  
Sbjct: 211 LKDALEIFRNI----PSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNI 266

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  +  +A++ + +MV  GV  D V++N++++  CK GK E A+ LL  M ++ 
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN 326

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+  LI GLCK  N+  A+  ++     GF  ++  Y+ + D L K G+ID A 
Sbjct: 327 CRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAF 386

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + M  K    +  TY++++  LCKA +   A +LL S + SG          +VDGL
Sbjct: 387 ELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGL 446

Query: 297 RHSG 300
              G
Sbjct: 447 CKEG 450



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 12/280 (4%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
            A+  F      GF     T N  ++ L + G       + + + D+G+AP++ TY  ++
Sbjct: 108 TAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVI 167

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K   +  +      +L   K +G+  +   Y  +  AF K GRLK+A +    + +    
Sbjct: 168 KSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSP--- 224

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D ++YN +I+ +C++   + A   L EM ++    D +T+ ILIDGLCKA     A   
Sbjct: 225 -DAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEM 283

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCK 263
           L  M   G   +   +N I+D L K GK + A ++   M  ++      TY++++  LCK
Sbjct: 284 LHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCK 343

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            + +  A  L+   + SG          + DGL    C+R
Sbjct: 344 QQNVDRAKDLVDEFVSSGFVPDVVTYSILADGL----CKR 379



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 125/271 (46%), Gaps = 26/271 (9%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++ CT T+N +++ LCK      AL +   +  HG     VTYNI I  LCK GRL  A 
Sbjct: 711 VSACT-TYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEAS 769

Query: 66  WILKELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
            +L E+       + ++YTT++    K    +R  KL  E+++    KG       +  +
Sbjct: 770 SLLSEMD---TLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAV---KGLCITSHTFNLL 823

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I AF K  RL EA   +  MV  G    +++YN +I   CK  K++ A+ L DEM  +G 
Sbjct: 824 IDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI 883

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI- 240
                ++T+LI GLC  G  K A   LE M          + +C +D L  +    H+  
Sbjct: 884 VASSVSYTVLIYGLCGQGRGKEALQVLEEM---------ASSDCEIDDLKWEDVAPHSQF 934

Query: 241 -----NVFESMEVKDSFTYSSMVHNLCKAKR 266
                  + S   + S T+ S+ +   KA +
Sbjct: 935 QTTFGPCYSSFHSRFSSTWCSVPYETNKAHK 965


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 168/309 (54%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG+CK    D A+R    +  +G  P ++T+NI+++ +C  GR   A   
Sbjct: 280 PDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKF 339

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G +P+ +T+  ++    R       +++L  M + G T +   Y  ++ A  K
Sbjct: 340 LAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCK 399

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +++ A +Y++ MV+ G   DIV+YNTL+   CK+GK++ A  +L+++  +G      T
Sbjct: 400 DKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLIT 459

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---E 244
           +  +IDGL K G    A   L+ M   G   ++  Y+ +V  L ++GK+D AI  F   E
Sbjct: 460 YNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLE 519

Query: 245 SMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            M VK ++ TY+S++  LCKA++   A   L   +  G +  +++   +++GL + G  +
Sbjct: 520 EMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAK 579

Query: 304 EAKKIQSKI 312
           EA ++ +++
Sbjct: 580 EALELLNEL 588



 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 149/283 (52%), Gaps = 17/283 (6%)

Query: 1   MIC----GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 56
           M+C     D+  CT+    ++ GLCK   T  A R+   L+  G VP+++TYN+LI G C
Sbjct: 136 MVCRGDIPDIIACTS----LIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYC 191

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS-AMKRKGYTFDG 115
           K G + +A  +L  +  S   P+ +TY TI++    + K K  +E+L   M+R+ Y  D 
Sbjct: 192 KTGEIGSALQLLDRMSVS---PDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYP-DV 247

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  +I A  K   + +A   +++M   G + D+V+YN LIN  CKEG+L+ A   L+ 
Sbjct: 248 ITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNH 307

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M   G + +  TH I++  +C  G    A   L  M + G   ++  +N +++ L + G 
Sbjct: 308 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGL 367

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           I  AI+V E M       +S +Y+ ++H LCK K++  A + L
Sbjct: 368 IGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYL 410



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 154/311 (49%), Gaps = 7/311 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N++++G CK     +AL++   L +    P++VTYN +++ LC +G+L+ A  
Sbjct: 177 VPDVITYNVLISGYCKTGEIGSALQL---LDRMSVSPDVVTYNTILRTLCDSGKLKEAME 233

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L         P+ ITYT +++   +       +++L  M+ KG   D   Y  +I    
Sbjct: 234 VLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC 293

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GRL EA  ++  M + G Q +++++N ++   C  G+   A   L EM ++G      
Sbjct: 294 KEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVV 353

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  ILI+ LC+ G I  A   LE M + G   N  +YN ++  L KD K++ AI   + M
Sbjct: 354 TFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIM 413

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             +    D  TY++++  LCK  ++  A ++L      G   +      V+DGL   G  
Sbjct: 414 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKT 473

Query: 303 REAKKIQSKIR 313
            +A K+  +++
Sbjct: 474 DDAIKLLDEMK 484



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 124/246 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   TFNI++N LC+      A+ +   + +HG  P  ++YN L+  LCK  +
Sbjct: 343 MIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKK 402

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L  +   G  P+ +TY T++    ++ K  + +EIL+ +  KG +     Y T
Sbjct: 403 MERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNT 462

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    K+G+  +A   +++M   G++ DI++Y+TL+    +EGK++ A     ++E+ G
Sbjct: 463 VIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMG 522

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+  ++ GLCKA     A   L YM   G      +Y  +++ L  +G    A+
Sbjct: 523 VKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEAL 582

Query: 241 NVFESM 246
            +   +
Sbjct: 583 ELLNEL 588



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 80/173 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +L  LCK+   D A+ +   L   G  P L+TYN +I GL K G+   A  +
Sbjct: 420 PDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKL 479

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY+T++    R  K    +     ++  G   +   Y +++    K
Sbjct: 480 LDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCK 539

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
             +   A D++  MV  G +    SY  LI     EG  + A  LL+E+  +G
Sbjct: 540 ARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRG 592



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 36/226 (15%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           RN + + G + L  M  +G   D     ++I    K G+  +AT  ME +   G   D++
Sbjct: 122 RNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVI 181

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEME---------------------KQGFEC------- 183
           +YN LI+ YCK G++ +A  LLD M                      K+  E        
Sbjct: 182 TYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQR 241

Query: 184 ----DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D  T+TILI+  CK   +  A   L+ M   G   ++  YN +++ + K+G++D A
Sbjct: 242 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEA 301

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           I     M       +  T++ ++ ++C   R   A K L   ++ G
Sbjct: 302 IRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKG 347



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 74/140 (52%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +++GL K   TD+A+++   ++  G  P+++TY+ L+ GL + G++  A  
Sbjct: 454 SPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIA 513

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              +L + G  PNAITY +IM    + R+    ++ L+ M  +G       Y  +I    
Sbjct: 514 FFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLA 573

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G  KEA + + ++ + GV
Sbjct: 574 YEGLAKEALELLNELCSRGV 593



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            V+ G L+E   ++E MV  G   DI++  +LI   CK GK   A  +++ +E  G   D
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ +LI G CK G I  A   L+ ++++    ++  YN I+  L   GK+  A+ V +
Sbjct: 180 VITYNVLISGYCKTGEIGSA---LQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               +    D  TY+ ++   CK   +  A KLL      G +        +++G+   G
Sbjct: 237 RQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEG 296

Query: 301 CRREA 305
              EA
Sbjct: 297 RLDEA 301



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V  N  +    + G+LE  +  L++M  +G   D    T LI GLCK G    A   +E 
Sbjct: 111 VENNNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEI 170

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-KDSFTYSSMVHNLCKAKRLPS 269
           +   G   ++  YN ++    K G+I  A+ + + M V  D  TY++++  LC + +L  
Sbjct: 171 LEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKE 230

Query: 270 ASKLL 274
           A ++L
Sbjct: 231 AMEVL 235



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ GLCK R T  A+     +   G  P   +Y ILI+GL   G  + A  +
Sbjct: 525 PNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALEL 584

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL-SAMKRKGYTFDGFGYCTVI 122
           L EL   G    +     ++K  F    +   L +L + +      F G G+  ++
Sbjct: 585 LNELCSRGVVKKSSAEQVVVKIPFNVFYFYFLLHLLFNGLGSHREIFVGVGFFMIL 640


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 154/298 (51%), Gaps = 4/298 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N+++ GLC+ R  D A+ + R +   G VP+L TY+ILI G C   R R A+ 
Sbjct: 247 SPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 306

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E+ D G  P  ITY  ++    R    +    I   M   G   +   + T++    
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVC 366

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++++A + M++M+  GV+ D  +Y+ LI  +C+   +  A+ LLDEM+K+       
Sbjct: 367 KAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 426

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++++I+GLC+ GN++G    L  M   G   N   Y  ++    K+G+++ +  + E M
Sbjct: 427 TYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 486

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                + D F Y+S++   CKAKR+  A   L+  L+  +R       A +DG   +G
Sbjct: 487 REQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAG 544



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 155/319 (48%), Gaps = 8/319 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N +++G  +    + A R+   +   G    L+ +N L+ G+CKAG+
Sbjct: 311 MIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGK 370

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I++E+ + G  P++ TY+ +++   R +      E+L  MK++        Y  
Sbjct: 371 MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSV 430

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G L+     + +MV +G++ + V Y TL+  + KEG++E + ++L+ M +QG
Sbjct: 431 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 490

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + +  LI G CKA  ++ AR +L  M +     N   Y   +D   K G+++ A 
Sbjct: 491 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIAD 550

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ--KAVVD 294
             F  M     + +   Y++++   CK   +  A  +    L    R+L+  Q    ++ 
Sbjct: 551 RYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR--RVLQDVQTYSVLIH 608

Query: 295 GLRHSGCRREAKKIQSKIR 313
           GL  +G   EA  I S+++
Sbjct: 609 GLSRNGKMHEAFGIFSELQ 627



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 152/325 (46%), Gaps = 18/325 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI+++GLCK    + A  +F  ++  G  P  VTY  ++ G CK+     A 
Sbjct: 666 INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAF 725

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+   G  P+A  Y  I+  C +  K++  L++   M  KG+      + T+I  +
Sbjct: 726 QLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGY 784

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L+EA   +E+M+      + V+Y +LI+  CK G +  A  L  EM+++      
Sbjct: 785 CKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTA 844

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T L+ G    GN+       E M   G + +   Y  ++D   ++G      NV E+
Sbjct: 845 KTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREG------NVMEA 898

Query: 246 MEVKDSF----------TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            ++KD             Y +++  LCK +      KLL    +SG R+       +  G
Sbjct: 899 CKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARG 958

Query: 296 LRHSGCRREAKKI-QSKIRMAKISH 319
            + +G   EA ++ +S ++   +S+
Sbjct: 959 FQIAGNMDEAAEVLRSMVKFGWVSN 983



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 154/313 (49%), Gaps = 4/313 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +  P   + N +L  L K    +   ++F G+  H  +P++ TY  +I   CK G ++ A
Sbjct: 175 EFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDA 234

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +L E+G+ G +PN +TY  I+    R R     +E+  +M  KG   D + Y  +I  
Sbjct: 235 KRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILING 294

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F    R +EA   + +M+  G++ + ++YN LI+ + ++G +E A+ + DEM   G E +
Sbjct: 295 FCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEAN 354

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
                 L++G+CKAG ++ A   ++ M + G + + + Y+ +++   +   +  A  + +
Sbjct: 355 LIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLD 414

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+         TYS +++ LC+   L   + +L   + +G++        ++      G
Sbjct: 415 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 474

Query: 301 CRREAKKIQSKIR 313
              E++ I  ++R
Sbjct: 475 RVEESRMILERMR 487



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 145/310 (46%), Gaps = 6/310 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P    +  ++ G CK      A  +FR +     + ++ TY++LI GL + G++ 
Sbjct: 559 CGVL-PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 617

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  I  EL + G  PNA TY +++    +        ++L  M  KG   D   Y  +I
Sbjct: 618 EAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILI 677

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K G ++ A +  + +   G+  + V+Y  +++ YCK     AA+ LL+EM  +G  
Sbjct: 678 DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVP 737

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D + + ++++  CK    + A    + M + GF S + ++N +++   K GK+  A ++
Sbjct: 738 PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHL 796

Query: 243 FESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            E M     + +  TY+S++ + CKA  +  A +L L   +  V        +++ G  +
Sbjct: 797 LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHN 856

Query: 299 SGCRREAKKI 308
            G   E   +
Sbjct: 857 IGNMSEVSAL 866



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 9/250 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +N++LN  CK    + AL +F+ + + GF    V++N LI+G CK+G+
Sbjct: 731 MLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGK 789

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           L+ A  +L+E+ +    PN +TYT+++    K        +L LE    M+ +       
Sbjct: 790 LQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLE----MQERNVMPTAK 845

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y +++  +  IG + E +   E+MV  G++ D ++Y  +I+ YC+EG +  A  L DE+
Sbjct: 846 TYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEI 905

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G       +  LI  LCK          L  + + GF   L   + I       G +
Sbjct: 906 LVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNM 965

Query: 237 DHAINVFESM 246
           D A  V  SM
Sbjct: 966 DEAAEVLRSM 975



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 35/246 (14%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI     P   T+  +++  CK      A R++  +Q+   +P   TY  L+ G    G 
Sbjct: 800  MIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGN 859

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +     + +E+   G  P+ +TY  +                                  
Sbjct: 860  MSEVSALFEEMVAKGIEPDKMTYYVM---------------------------------- 885

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
             I A+ + G + EA    ++++  G+ + + +Y+ LI   CK+ +      LL+E+ + G
Sbjct: 886  -IDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESG 944

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            F     T +++  G   AGN+  A   L  M K G+ SN  +   +VD        + + 
Sbjct: 945  FRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSD 1004

Query: 241  NVFESM 246
            N+ + M
Sbjct: 1005 NLLKQM 1010


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 160/293 (54%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG+CK    D A++    +  +G  P ++T+NI+++ +C  GR   A  +
Sbjct: 277 PDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERL 336

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G +P+ +T+  ++    R R     +++L  M + G   +   Y  ++  F +
Sbjct: 337 LADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQ 396

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A +Y+E MV+ G   DIV+YNTL+   CK+GK +AA  +L+++  +G      T
Sbjct: 397 EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLIT 456

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +IDGL K G  + A   LE M + G   ++  Y+ ++  LG +GK+D AI +F  ME
Sbjct: 457 YNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDME 516

Query: 248 ---VKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              +K S  TY++++  LCKA++   A   L   ++ G +  K+    +++G+
Sbjct: 517 GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 153/310 (49%), Gaps = 7/310 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++ G CK+   D AL++   L++    P++VTYN +++ LC +G+L+ A  +
Sbjct: 175 PDVITYNVLIGGYCKSGEIDKALQV---LERMSVAPDVVTYNTILRSLCDSGKLKEAMEV 231

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L         P+ ITYT +++    +      +++L  M++KG   D   Y  +I    K
Sbjct: 232 LDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICK 291

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL EA  ++  M   G Q +++++N ++   C  G+   A  LL +M ++G      T
Sbjct: 292 EGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVT 351

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             ILI+ LC+   +  A   LE M K G   N  +YN ++    ++ K+D AI   E M 
Sbjct: 352 FNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 411

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++  LCK  +  +A ++L      G   +      V+DGL   G   
Sbjct: 412 SRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 471

Query: 304 EAKKIQSKIR 313
            A ++  ++R
Sbjct: 472 YAAELLEEMR 481



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 115/222 (51%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TFNI++N LC+ R    A+ +   + KHG +P  ++YN L+ G C+  ++  A  
Sbjct: 346 SPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIE 405

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L+ +   G  P+ +TY T++    ++ K    +EIL+ +  KG +     Y TVI    
Sbjct: 406 YLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLT 465

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G+ + A + +E+M   G++ DI++Y+TL+     EGK++ A  +  +ME    +    
Sbjct: 466 KVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAV 525

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           T+  ++ GLCKA     A   L YM + G       Y  +++
Sbjct: 526 TYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 38/298 (12%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           NI L  L +N   +  L+    +   G +P+++    LI+G C++G+ R A  I++ L +
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170

Query: 74  SGH--------------------------------APNAITYTTIMKCCFRNRKYKLGLE 101
           SG                                 AP+ +TY TI++    + K K  +E
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAME 230

Query: 102 ILS-AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
           +L   M+R+ Y  D   Y  +I A      + +A   +++M   G + D+V+YN LIN  
Sbjct: 231 VLDRQMQRECYP-DVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGI 289

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           CKEG+L+ A   L+ M   G + +  TH I++  +C  G    A   L  M + G   ++
Sbjct: 290 CKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSV 349

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             +N +++ L +   +  AI+V E M     + +S +Y+ ++H  C+ K++  A + L
Sbjct: 350 VTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYL 407



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 8/215 (3%)

Query: 98  LGLEILSAMKRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           +G+E  S     G  +F+ F     +   V+ G L+E   ++E+M+  G   D+++  +L
Sbjct: 89  IGMESSSPNGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSL 148

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           I  +C+ GK   A  +++ +E  G   D  T+ +LI G CK+G I  A   L+ + ++  
Sbjct: 149 IRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKA---LQVLERMSV 205

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK 272
             ++  YN I+  L   GK+  A+ V +    +    D  TY+ ++   C    +  A K
Sbjct: 206 APDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMK 265

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           LL    K G +        +++G+   G   EA K
Sbjct: 266 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIK 300


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGL  + + ++A ++F  +     VP+ VTYNI+IKG CKAG+L+ A 
Sbjct: 216 IDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAM 275

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +++      P+ ITY T+++ C+  R +   L +   M+ +G       Y  VI   
Sbjct: 276 EKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGL 335

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +  EA    E M   G + ++  Y  LI+ Y K G +E A  L + M+ +GFE D 
Sbjct: 336 CKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDA 395

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+++L++GLCK+G +       ++    G   N   Y  ++D LGK G+I+ A N+FE 
Sbjct: 396 VTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEE 455

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    DS+ Y++++  L K  ++  A  L     + G          ++DGL     
Sbjct: 456 MSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHK 515

Query: 302 RREAKKIQSKI 312
             EA K   K+
Sbjct: 516 NEEAIKFWDKM 526



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 140/297 (47%), Gaps = 4/297 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G + P T T+NIM+ G CK      A+  FR ++     P+ +TY  LI+         T
Sbjct: 249 GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDT 308

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              +  E+ + G      +Y+ ++    + RK      +   M +KG   +   Y  +I 
Sbjct: 309 CLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALID 368

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           ++ K G ++EA    E+M  +G + D V+Y+ L+N  CK G+L+    L D    +G   
Sbjct: 369 SYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAI 428

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +   +  LIDGL KAG I+ A    E M++ G   +   YN I+D L K GKID A+ +F
Sbjct: 429 NAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALF 488

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             ME     +  +T++ ++  L K  +   A K     +  G+    ++ +A+  GL
Sbjct: 489 GRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 545



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 3/292 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++++++ GLCK R    A  +F  + + G    +  Y  LI    K G +  A  + + +
Sbjct: 327 SYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERM 386

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+A+TY+ ++    ++ +   G+E+    + KG   +   Y ++I    K GR+
Sbjct: 387 KNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRI 446

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A +  E+M   G   D   YN +I+   K GK++ A  L   ME++G +   YT TIL
Sbjct: 447 EDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTIL 506

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SMEV 248
           IDGL K    + A    + M   G    + ++  +   L   GK+  A  + +    M +
Sbjct: 507 IDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI 566

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                +  M++ LCKA+R+  A KL    +  G  I    +  +++ LR +G
Sbjct: 567 IPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAG 618



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 132/281 (46%), Gaps = 4/281 (1%)

Query: 32  MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
           +F  L+  G +      N LIK     G +    W+ + + ++G  P+  TY  ++    
Sbjct: 172 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 231

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
            +   +   ++   M       D   Y  +I  + K G+L++A +    M    V+ D +
Sbjct: 232 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 291

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y TLI     E   +    L  EME++G E   ++++++I GLCK      A    E M
Sbjct: 292 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 351

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
           N+ G  +N+  Y  ++D   K+G ++ A+ +FE M+ +    D+ TYS +V+ LCK+ RL
Sbjct: 352 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 411

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               +L   C   GV I      +++DGL  +G   +A+ +
Sbjct: 412 DDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENL 452



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T+++++NGLCK+   D+ + +F   +  G     + Y  LI GL KAGR+  A 
Sbjct: 391 FEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAE 450

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ + G A ++  Y  I+    ++ K    L +   M+ +G     + +  +I   
Sbjct: 451 NLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGL 510

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  + +EA  + ++M+  G+   + S+  L    C  GK+  A  +LD++   G    +
Sbjct: 511 FKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI-IPE 569

Query: 186 YTHTILIDGLCKAGNIKGA 204
                +I+ LCKA  IK A
Sbjct: 570 TAFEDMINTLCKAQRIKEA 588



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 93/216 (43%), Gaps = 4/216 (1%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +   +K +G         ++I +F  +G ++E      +M  +G+   + +YN L+N   
Sbjct: 172 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 231

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
               +E+A  + + M+      D  T+ I+I G CKAG ++ A      M       +  
Sbjct: 232 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 291

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            Y  ++     +   D  ++++  ME +       +YS ++  LCK ++   A  +  + 
Sbjct: 292 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 351

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            + G R   +   A++D    +G   EA ++  +++
Sbjct: 352 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMK 387



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 4/120 (3%)

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +LI L      L    L+  E++ +G    +     LI      G ++        M + 
Sbjct: 155 SLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKEN 214

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G D +L  YN +V+ L     I+ A  VFE M+    V D+ TY+ M+   CKA +L  A
Sbjct: 215 GIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKA 274


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGL  + + ++A ++F  +     VP+ VTYNI+IKG CKAG+L+ A 
Sbjct: 214 IDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAM 273

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +++      P+ ITY T+++ C+  R +   L +   M+ +G       Y  VI   
Sbjct: 274 EKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGL 333

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +  EA    E M   G + ++  Y  LI+ Y K G +E A  L + M+ +GFE D 
Sbjct: 334 CKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDA 393

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+++L++GLCK+G +       ++    G   N   Y  ++D LGK G+I+ A N+FE 
Sbjct: 394 VTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEE 453

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    DS+ Y++++  L K  ++  A  L     + G          ++DGL     
Sbjct: 454 MSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHK 513

Query: 302 RREAKKIQSKI 312
             EA K   K+
Sbjct: 514 NEEAIKFWDKM 524



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 140/297 (47%), Gaps = 4/297 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G + P T T+NIM+ G CK      A+  FR ++     P+ +TY  LI+         T
Sbjct: 247 GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDT 306

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              +  E+ + G      +Y+ ++    + RK      +   M +KG   +   Y  +I 
Sbjct: 307 CLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALID 366

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           ++ K G ++EA    E+M  +G + D V+Y+ L+N  CK G+L+    L D    +G   
Sbjct: 367 SYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAI 426

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +   +  LIDGL KAG I+ A    E M++ G   +   YN I+D L K GKID A+ +F
Sbjct: 427 NAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALF 486

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             ME     +  +T++ ++  L K  +   A K     +  G+    ++ +A+  GL
Sbjct: 487 GRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 543



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 3/292 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++++++ GLCK R    A  +F  + + G    +  Y  LI    K G +  A  + + +
Sbjct: 325 SYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERM 384

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+A+TY+ ++    ++ +   G+E+    + KG   +   Y ++I    K GR+
Sbjct: 385 KNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRI 444

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A +  E+M   G   D   YN +I+   K GK++ A  L   ME++G +   YT TIL
Sbjct: 445 EDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTIL 504

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SMEV 248
           IDGL K    + A    + M   G    + ++  +   L   GK+  A  + +    M +
Sbjct: 505 IDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI 564

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                +  M++ LCKA+R+  A KL    +  G  I    +  +++ LR +G
Sbjct: 565 IPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAG 616



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 132/281 (46%), Gaps = 4/281 (1%)

Query: 32  MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
           +F  L+  G +      N LIK     G +    W+ + + ++G  P+  TY  ++    
Sbjct: 170 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 229

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
            +   +   ++   M       D   Y  +I  + K G+L++A +    M    V+ D +
Sbjct: 230 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 289

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y TLI     E   +    L  EME++G E   ++++++I GLCK      A    E M
Sbjct: 290 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 349

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
           N+ G  +N+  Y  ++D   K+G ++ A+ +FE M+ +    D+ TYS +V+ LCK+ RL
Sbjct: 350 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 409

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               +L   C   GV I      +++DGL  +G   +A+ +
Sbjct: 410 DDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENL 450



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T+++++NGLCK+   D+ + +F   +  G     + Y  LI GL KAGR+  A 
Sbjct: 389 FEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAE 448

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ + G A ++  Y  I+    ++ K    L +   M+ +G     + +  +I   
Sbjct: 449 NLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGL 508

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  + +EA  + ++M+  G+   + S+  L    C  GK+  A  +LD++   G    +
Sbjct: 509 FKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI-IPE 567

Query: 186 YTHTILIDGLCKAGNIKGA 204
                +I+ LCKA  IK A
Sbjct: 568 TAFEDMINTLCKAQRIKEA 586



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 93/216 (43%), Gaps = 4/216 (1%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +   +K +G         ++I +F  +G ++E      +M  +G+   + +YN L+N   
Sbjct: 170 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 229

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
               +E+A  + + M+      D  T+ I+I G CKAG ++ A      M       +  
Sbjct: 230 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 289

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            Y  ++     +   D  ++++  ME +       +YS ++  LCK ++   A  +  + 
Sbjct: 290 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 349

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            + G R   +   A++D    +G   EA ++  +++
Sbjct: 350 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMK 385



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 4/120 (3%)

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +LI L      L    L+  E++ +G    +     LI      G ++        M + 
Sbjct: 153 SLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKEN 212

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G D +L  YN +V+ L     I+ A  VFE M+    V D+ TY+ M+   CKA +L  A
Sbjct: 213 GIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKA 272


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 166/310 (53%), Gaps = 4/310 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+C+    D+A+   + L  +G  P  V+YNI++KGLC A R   A  
Sbjct: 99  TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEE 158

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E+G  G  PN +T+  ++    R    +  LE+L  + + G T +   Y  ++ AF 
Sbjct: 159 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 218

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  ++ +A  +++ MV+ G   DIVSYNTL+   C+ G+++ A  LL +++ +G      
Sbjct: 219 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI 278

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF--- 243
           ++  +IDGL KAG  K A   L  M   G   ++  Y+ I   L ++ +I+ AI  F   
Sbjct: 279 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 338

Query: 244 ESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + M ++ ++  Y++++  LCK +   SA  L    + +G    +S    +++GL + G  
Sbjct: 339 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 398

Query: 303 REAKKIQSKI 312
           +EA+ +  ++
Sbjct: 399 KEARDLLDEL 408



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 150/337 (44%), Gaps = 43/337 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT------------------ 47
           + P   T+N ++ GLC    T NAL +   + +   VP++VT                  
Sbjct: 28  VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 87

Query: 48  -----------------YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                            YN+++ G+C+ GR+  A   LK L   G  PN ++Y  ++K  
Sbjct: 88  KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 147

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
               +++   E++  M +KG   +   +  +I+   + G ++ A + +EQ+   G   + 
Sbjct: 148 CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 207

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           +SYN L++ +CK+ K++ A   LD M  +G   D  ++  L+  LC++G +  A   L  
Sbjct: 208 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 267

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           +   G    L +YN ++D L K GK   A+ +   M  K    D  TYS++   LC+  R
Sbjct: 268 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 327

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +  A +        G+R       A++ GL    C+R
Sbjct: 328 IEDAIRAFGKVQDMGIRPNTVLYNAIILGL----CKR 360



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 9/234 (3%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILS 104
           + YN ++ G C AG+L  AR ++ E+      P+A TY T+++  C R R     L +L 
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTAN-ALAVLD 56

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            M R+    D   Y  ++ A  K    K+A   +++M   G   DIV+YN ++N  C+EG
Sbjct: 57  EMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 116

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           +++ A   L  +   G E +  ++ I++ GLC A   + A   +  M + G   N+  +N
Sbjct: 117 RVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFN 176

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            ++  L + G ++ A+ V E +       +S +Y+ ++H  CK K++  A   L
Sbjct: 177 MLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 230



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 6/186 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L  LC++   D A+ +   L+  G  P L++YN +I GL KAG+ + A  +
Sbjct: 240 PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALEL 299

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY+TI     R  + +  +     ++  G   +   Y  +I    K
Sbjct: 300 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 359

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                 A D    M+ +G   +  +Y  LI     EG ++ A  LLDE+      C +  
Sbjct: 360 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL------CSRAG 413

Query: 188 HTILID 193
             IL+D
Sbjct: 414 EEILLD 419


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 157/300 (52%), Gaps = 5/300 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   TFNI++N LCK       +R+F  ++  G  P+ VTYNILI  LC  G+L  A 
Sbjct: 403 LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNAL 462

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+  +G   + +TY TI+    +  + +   E+   M  +G +     + T+I   
Sbjct: 463 DLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGL 522

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ +AT+ +EQMV +G+Q + ++YN+++  YCK+G ++ A  +L+ M   GFE D 
Sbjct: 523 CKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDV 582

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GLCKAG  + A   L  M   G     +AYN ++  L +   +  A+N+F  
Sbjct: 583 VTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFRE 642

Query: 246 M----EVKDSFTYSSMVHNLCK-AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M    E  D+ TY  +  +LC+    +  A   L+  +  G     S+ + + +GL + G
Sbjct: 643 MTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T N+++NG CK    ++AL   +     GF P+ VTYN  + GLC+ G +  A  
Sbjct: 264 SPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALK 323

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++  +   GH P+  TY T++ C  +N +      I++ M  +G   D   + T+I A  
Sbjct: 324 VMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALS 383

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
              RL+EA D   ++   G+  D+ ++N LIN  CK G       L +EM+  G   D+ 
Sbjct: 384 SQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEV 443

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ ILID LC  G +  A   L  M   G   +   YN I+D L K  +I+ A  VF+ M
Sbjct: 444 TYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQM 503

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +     + + T+++++  LCKAKR+  A++L+   +K G++
Sbjct: 504 DAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 544



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 142/302 (47%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++N L KN   D A  +   +   G +P+  T+N LI  L    RL  A  +
Sbjct: 335 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDL 394

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +EL   G +P+  T+  ++    +     LG+ +   MK  G T D   Y  +I     
Sbjct: 395 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCS 454

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L  A D + +M ++G     V+YNT+I+  CK+ ++E A  + D+M+ QG      T
Sbjct: 455 MGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVT 514

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LIDGLCKA  I  A   +E M K G   N   YN I+    K G I  A ++ E+M 
Sbjct: 515 FNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMT 574

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY ++++ LCKA R   A KLL      G+R    A   V+  L      R
Sbjct: 575 ANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLR 634

Query: 304 EA 305
           +A
Sbjct: 635 DA 636



 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 146/297 (49%), Gaps = 8/297 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF  ++ G  +    + ALR+   + + G  P  VT N+LI G CK GR+  A 
Sbjct: 228 VAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDAL 287

Query: 66  -WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +I +E+ D G  P+ +TY T +    +N      L+++  M ++G+  D F Y TVI  
Sbjct: 288 GYIQQEIAD-GFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINC 346

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G L EA   + QMV  G   D  ++NTLI     + +LE A  L  E+  +G   D
Sbjct: 347 LSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPD 406

Query: 185 KYTHTILIDGLCKAGNIK-GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
            YT  ILI+ LCK G+   G RL  E M   G   +   YN ++D L   GK+ +A+++ 
Sbjct: 407 VYTFNILINALCKVGDPHLGIRL-FEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLL 465

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             ME     + + TY++++  LCK  R+  A ++       G+         ++DGL
Sbjct: 466 NEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGL 522



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 137/258 (53%), Gaps = 4/258 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +LN L +         ++  +   G  P++VT N LIK LC+A ++RTA  +L+
Sbjct: 162 TVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLE 221

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G AP+  T+TT+M+        +  L + + M   G +  G     +I  + K+G
Sbjct: 222 EMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMG 281

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A  Y++Q + DG + D V+YNT ++  C+ G +  A  ++D M ++G + D +T+ 
Sbjct: 282 RVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYN 341

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            +I+ L K G +  A+  +  M   G   +   +N ++  L    +++ A+++   + VK
Sbjct: 342 TVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVK 401

Query: 250 ----DSFTYSSMVHNLCK 263
               D +T++ +++ LCK
Sbjct: 402 GLSPDVYTFNILINALCK 419



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 117/238 (49%), Gaps = 4/238 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G   + V +N L+  L +  +L+    +  E+   G  P+ +T  T++K   R  + +  
Sbjct: 157 GVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTA 216

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           + +L  M   G   D   + T++  F++ G ++ A     +M+  G     V+ N LIN 
Sbjct: 217 VLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLING 276

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           YCK G++E A   + +    GFE D+ T+   + GLC+ G++  A   ++ M + G D +
Sbjct: 277 YCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPD 336

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
           +  YN +++ L K+G++D A  +   M     + D+ T+++++  L    RL  A  L
Sbjct: 337 VFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDL 394



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 139/306 (45%), Gaps = 10/306 (3%)

Query: 16  MLNGLCKNRYTDNALRMFR-GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +L  L +    + ALRM    L +  F P    Y  +++ L  AG       +++E+   
Sbjct: 59  LLAALREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRRE 118

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLE-ILSAMKRK--GYTFDGFGYCTVIAAFVKIGRL 131
           GH   A+   + ++   R R++   ++ +L+ +     G   D   +  ++   V+  +L
Sbjct: 119 GHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKL 178

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           K       +M   G+Q D+V+ NTLI   C+  ++  A L+L+EM   G   D+ T T L
Sbjct: 179 KLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTL 238

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           + G  + G+I+ A      M + G        N +++   K G+++ A+   +  E+ D 
Sbjct: 239 MQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQ-EIADG 297

Query: 252 F-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
           F     TY++ VH LC+   +  A K++   L+ G          V++ L  +G   EAK
Sbjct: 298 FEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 357

Query: 307 KIQSKI 312
            I +++
Sbjct: 358 GIVNQM 363



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 1/157 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +L   CK      A  +   +  +GF  ++VTY  LI GLCKAGR
Sbjct: 538 MVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 597

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+ +   G  P    Y  +++  FR    +  L +   M   G   D   Y  
Sbjct: 598 TQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKI 657

Query: 121 VIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           V  +  +  G +KEA D++ +MV  G   +  S+  L
Sbjct: 658 VFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRML 694


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 164/314 (52%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+N M+NGL K+   D+A+R+   +  +GF P + +YN ++ G CKA R+  A W+
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++   G  P+ ++YTT++    +  +      ++  M ++G   +   Y T++  F +
Sbjct: 288 LEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 347

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G L  A + + +M   G + + ++YN +++++C+   +E A+ +L  M + G   D   
Sbjct: 348 VGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAIN 407

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE--- 244
           ++ +I G CKAG ++ A   LE M + G   ++   + ++D L K   ID A  +     
Sbjct: 408 YSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSI 467

Query: 245 SME-VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            M+   D   YS ++H LCKAKRLP A   L   +K+          +VVDGL  S    
Sbjct: 468 GMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIN 527

Query: 304 EAKKIQSKIRMAKI 317
           +A  +  ++R A +
Sbjct: 528 DAFLLFDRMRAAGV 541



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 146/280 (52%), Gaps = 8/280 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   ++  ++NGLCK    D A R+   + + G  P ++TY  L+ G C+ G 
Sbjct: 291 MVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGD 350

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +++++ + G+ PNAITY  IM    R    +   ++L  M + G   D   Y T
Sbjct: 351 LDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYST 410

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ F K G+L+EA D +EQM+  G + D+   +TLI+  CK   +++A  LL      G
Sbjct: 411 IISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL--RMSIG 468

Query: 181 FEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            +C  D   ++ILI  LCKA  +  A   L+ M K     ++  YN +VD L K  +I+ 
Sbjct: 469 MDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIND 528

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           A  +F+ M     + D  TYS ++H+ CK   L SA K+L
Sbjct: 529 AFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKML 568



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 152/273 (55%), Gaps = 5/273 (1%)

Query: 7    TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            +P   TF I+++GLC+      A  + + + +HG    ++ +N++IKGLC A +L +A  
Sbjct: 874  SPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALE 933

Query: 67   ILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+ +SG   P+  TY+TI+    ++ K      ++  M  KG + +   Y +++   
Sbjct: 934  LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGL 993

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             K G+L EAT  +++M   G   +IV+YNT+I+ +CK G+++ AY LL+EM   G + + 
Sbjct: 994  CKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNV 1053

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             T+T+L+D  CK G  + A   +E M + G+  NL  YN ++D   K  +++ A  +  S
Sbjct: 1054 VTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSS 1113

Query: 246  ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            M     V +  +Y++++  LCKA ++     LL
Sbjct: 1114 MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 1146



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 5/287 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+    +P   T++ +L+GLCK    D A  + + + + G  P +VTYN +I G CK GR
Sbjct: 974  MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGR 1033

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  A  +L+E+ D G  PN +TYT ++    +  K +  + ++  M  KGY  + F Y +
Sbjct: 1034 IDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNS 1093

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++  F K   ++ A   +  M+  G   ++VSYNT+I   CK  K+    LLL++M    
Sbjct: 1094 LLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNN 1153

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               D  T   +ID +CK   +  A      + + G   NL  YN +V  L K  + D A 
Sbjct: 1154 CVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE 1213

Query: 241  NVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             +   M  K     D  TY++++  LCK+KR+  A KL L  L  G+
Sbjct: 1214 YLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 1260



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 153/298 (51%), Gaps = 5/298 (1%)

Query: 4    GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            G   P   T++ +++ L K+   D+A R+   +   G  P +VTY+ L+ GLCKAG+L  
Sbjct: 942  GSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDE 1001

Query: 64   ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            A  +L+ +  SG +PN +TY TI+    +  +      +L  M   G   +   Y  ++ 
Sbjct: 1002 ATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD 1061

Query: 124  AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            AF K G+ ++A   +E MV  G   ++ +YN+L++++CK+ ++E A  LL  M ++G   
Sbjct: 1062 AFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVP 1121

Query: 184  DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
            +  ++  +I GLCKA  +    L LE M       ++  +N I+D + K  ++D A  +F
Sbjct: 1122 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELF 1181

Query: 244  ----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL-KSGVRILKSAQKAVVDGL 296
                ES    +  TY+S+VH LCK++R   A  LL     K G          V+DGL
Sbjct: 1182 NLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL 1239



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 141/274 (51%), Gaps = 13/274 (4%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+  +  P   TFN +++ +CK    D A  +F  +Q+ G  P LVTYN L+ GLCK+ R
Sbjct: 1149 MLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 1208

Query: 61   LRTARWILKELG-DSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDG 115
               A ++L+E+    G +P+ ITY T++    K    +R YKL L++LS     G   D 
Sbjct: 1209 FDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS----DGLAPDD 1264

Query: 116  FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
              Y  VI++  K   + EA + +E M+ +G     ++Y TLI+ +CK G L+ A  +L  
Sbjct: 1265 VTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 1324

Query: 176  MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
            +  +G   D  T +I ID L K G ++ A   LE M + G   +   YN ++        
Sbjct: 1325 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASL 1384

Query: 236  IDHAINVFESMEV----KDSFTYSSMVHNLCKAK 265
             + A+++FE M       D+ TY+++V +L   K
Sbjct: 1385 TEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKK 1418



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 155/288 (53%), Gaps = 5/288 (1%)

Query: 14   NIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++ GLC  R  D+AL +F+ +++ G  P ++ TY+ ++  L K+G++  A  +++++ 
Sbjct: 916  NVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMV 975

Query: 73   DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
              G +PN +TY++++    +  K      +L  M R G + +   Y T+I    K+GR+ 
Sbjct: 976  SKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRID 1035

Query: 133  EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            EA   +E+MV  G Q ++V+Y  L++ +CK GK E A  L++ M ++G+  + +T+  L+
Sbjct: 1036 EAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLL 1095

Query: 193  DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            D  CK   ++ A   L  M + G   N+ +YN ++  L K  K+   + + E M     V
Sbjct: 1096 DMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCV 1155

Query: 249  KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             D  T+++++  +CK  R+  A +L     +SG         ++V GL
Sbjct: 1156 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 1203



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 154/311 (49%), Gaps = 10/311 (3%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T++ +++G  +      A  +F  + + G       +  +++GLC AG+   A    +
Sbjct: 161 TVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFR 220

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  +   P+++TY T++    ++ +    + +L  M   G+  + F Y TV+  F K  
Sbjct: 221 EMSKTC-PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKAN 279

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R++ A   +EQMVT G   D+VSY T+IN  CK  +++ A  ++D+M ++G + +  T+ 
Sbjct: 280 RVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYG 339

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            L+DG C+ G++ GA   +  M + G+  N   YN I+    +   ++ A  V + M   
Sbjct: 340 TLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQT 399

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D+  YS+++   CKA +L  A  LL   ++ G R   +    ++D L    C+  A
Sbjct: 400 GCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDAL----CKAAA 455

Query: 306 -KKIQSKIRMA 315
               Q  +RM+
Sbjct: 456 IDSAQELLRMS 466



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 39/306 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++  C+    + A ++ + + + G  P+ + Y+ +I G CKAG+LR A  +
Sbjct: 368 PNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDL 427

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++   G  P+    +T++    +        E+L          D   Y  +I A  K
Sbjct: 428 LEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCK 487

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             RL EA  +++ MV +    D+V+YN++++  CK  ++  A+LL D M   G   D  T
Sbjct: 488 AKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVT 547

Query: 188 HTI-----------------------------------LIDGLCKAGNIKGARLHLEYMN 212
           ++I                                   LI+GLCKAG +  A    + M 
Sbjct: 548 YSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEML 607

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G   NL  YN ++D L K  K++ A  + E M       DS TY+ +++ LC A RL 
Sbjct: 608 GCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLE 667

Query: 269 SASKLL 274
            A ++L
Sbjct: 668 EAWRVL 673



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 17/269 (6%)

Query: 7    TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            +P   T+N +++GLCK++  D A ++F  +   G  P+ VTY+I+I  LCK   +  A  
Sbjct: 1226 SPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANN 1285

Query: 67   ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            +L+ +  +G  P AITY T++    +       LEIL  +  KG   D   +   I    
Sbjct: 1286 VLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLS 1345

Query: 127  KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            K GRL++A + +E M+  G+  D V+YNTL+  +C     E A  L + M + G E D  
Sbjct: 1346 KRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNA 1405

Query: 187  THTILIDGLCKAGNIK-------------GARLHLEYMNKIGFDSNLEA---YNC-IVDR 229
            T+T L+  L    + K             G +L+ E  +K+     +EA     C IVD 
Sbjct: 1406 TYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDM 1465

Query: 230  LGKDGKIDHAINVFESMEVKDSFTYSSMV 258
             GK G    A  VFE M+ ++   +S+M+
Sbjct: 1466 FGKCGSPQDARKVFEGMDQRNVVLWSAML 1494



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 122/252 (48%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P    ++I+++ LCK +    A      + K+   P++VTYN ++ GLCK+ R+  A
Sbjct: 470 DCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDA 529

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +   +  +G  P+ +TY+ ++    ++       ++L  MK      D   Y  +I  
Sbjct: 530 FLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALING 589

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G + +A D  ++M+  G   ++V+YNTLI+  CK  K+E A  +L+ M KQ    D
Sbjct: 590 LCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPD 649

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+T LI+GLC A  ++ A   L  M   G   +   Y  ++  L K   ++    + +
Sbjct: 650 SITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLK 709

Query: 245 SMEVKDSFTYSS 256
            ME  +   +++
Sbjct: 710 EMEATEEGQWNA 721



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 140/323 (43%), Gaps = 39/323 (12%)

Query: 29  ALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           AL  F   + + G+  E+   N L+  L KA +   A  + +   +     + +TY+T++
Sbjct: 109 ALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLI 168

Query: 88  KCCFRNRKYKLGLEILSAMKRKGY----------------------------------TF 113
               R  K     E+   M RKG                                     
Sbjct: 169 SGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPP 228

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D   Y T+I    K  RL +A   +E+MV +G   ++ SYNT+++ +CK  ++E A  LL
Sbjct: 229 DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 288

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
           ++M  +G   D  ++T +I+GLCK   +  A   ++ M + G   N+  Y  +VD   + 
Sbjct: 289 EQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 348

Query: 234 GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G +D A+ +   M  +    ++ TY++++H  C+   +  A ++L   +++G        
Sbjct: 349 GDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINY 408

Query: 290 KAVVDGLRHSGCRREAKKIQSKI 312
             ++ G   +G  REA  +  ++
Sbjct: 409 STIISGFCKAGKLREAHDLLEQM 431



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 22/262 (8%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P   TF+I ++ L K      A  +   + + G VP+ VTYN L+KG C A     A  +
Sbjct: 1332 PDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDL 1391

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYK-LGLEILSAMKRKGYTF------------- 113
             + +   G  P+  TYTT++      + YK L  E+  +M   G+               
Sbjct: 1392 FEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIE 1451

Query: 114  ---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
               D    C ++  F K G  ++A    E M     Q ++V ++ ++ +Y    + E A+
Sbjct: 1452 VEADVRLGCAIVDMFGKCGSPQDARKVFEGMD----QRNVVLWSAMLGVYVFHKQEEQAF 1507

Query: 171  LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK-IGFDSNLEAYNCIVDR 229
             L   M  +G E D  T   L+   C AG +  A      +++  G +  ++ ++C++D 
Sbjct: 1508 GLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDL 1567

Query: 230  LGKDGKIDHAINVFESMEVKDS 251
            LG+ G ++ A ++   M  K S
Sbjct: 1568 LGRLGLVNEAEDLMLGMPCKPS 1589


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 148/281 (52%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T +FN ++NGLCK+R  D   R+ + ++++   P++ TY++LI GLCK GRL  A 
Sbjct: 254 LRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAE 313

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN IT+T ++   +R+R+    +     M   G   D   Y T++   
Sbjct: 314 QLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGL 373

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G + +A   +++M   G++ D ++Y TLI+ YCKEG LE+A  +   M ++G   D 
Sbjct: 374 CKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDN 433

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T LI G C+ G ++ A   L  M + G   +   Y  ++D   K G +     + + 
Sbjct: 434 VAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKE 493

Query: 246 MEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M++        TY+ +++ LCK  ++ +A+ LL + L  GV
Sbjct: 494 MQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGV 534



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 130/262 (49%), Gaps = 4/262 (1%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           ++GF P++  YNILI   CK G +R A+ I  E+   G  P  +++ T++    ++R   
Sbjct: 216 EYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLD 275

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
            G  +   M+      D F Y  +I    K GRL  A    ++M   G++ + +++  LI
Sbjct: 276 EGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALI 335

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +   +  ++++A     +M   G + D   +  L++GLCK G++  AR  ++ M  +G  
Sbjct: 336 DGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMK 395

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            +   Y  ++D   K+G ++ A+ + + M     V D+  +++++   C+  R+  A + 
Sbjct: 396 PDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERT 455

Query: 274 LLSCLKSGVRILKSAQKAVVDG 295
           L   +++G++   +    V+DG
Sbjct: 456 LREMVEAGMKPDDATYTMVIDG 477



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 124/265 (46%), Gaps = 36/265 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +N +LNGLCK    + A ++   ++  G  P+ +TY  LI G CK G 
Sbjct: 354 MLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGD 413

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A                                   +EI   M  +G   D   +  
Sbjct: 414 LESA-----------------------------------MEIRKGMNEEGVVLDNVAFTA 438

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ F + GR+++A   + +MV  G++ D  +Y  +I+ YCK+G ++  + LL EM+  G
Sbjct: 439 LISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQING 498

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ +L++GLCK G +K A + LE M  +G   +   YN +++   K+GK +  +
Sbjct: 499 HKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLL 558

Query: 241 NV-FESMEVKDSFTYSSMVHNLCKA 264
            +  E   + D   Y+S+V    K+
Sbjct: 559 KLRNEKGLIVDYAYYTSLVSEYNKS 583



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 97/184 (52%), Gaps = 6/184 (3%)

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
           +  +++  G    +  YN LIN +CKEG +  A L+ +E+ K+G      +   LI+GLC
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 197 KAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           K+ N+ +G RL  + M +     ++  Y+ ++  L K+G++D A  +F+ M+ +    + 
Sbjct: 270 KSRNLDEGFRLK-KTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNG 328

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
            T+++++    +++R+ SA       L  GV+        +++GL   G   +A+K+  +
Sbjct: 329 ITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDE 388

Query: 312 IRMA 315
           ++M 
Sbjct: 389 MKMV 392



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           +    E+ + GF      + ILI+  CK G+I+ A+L    + K G      ++N +++ 
Sbjct: 208 WTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
           L K   +D    + ++ME      D FTYS ++H LCK  RL  A +L     + G+R  
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPN 327

Query: 286 KSAQKAVVDG 295
                A++DG
Sbjct: 328 GITFTALIDG 337


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 166/310 (53%), Gaps = 4/310 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+C+    D+A+   + L  +G  P  V+YNI++KGLC A R   A  
Sbjct: 24  TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEE 83

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E+G  G  PN +T+  ++    R    +  LE+L  + + G T +   Y  ++ AF 
Sbjct: 84  LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 143

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  ++ +A  +++ MV+ G   DIVSYNTL+   C+ G+++ A  LL +++ +G      
Sbjct: 144 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI 203

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF--- 243
           ++  +IDGL KAG  K A   L  M   G   ++  Y+ I   L ++ +I+ AI  F   
Sbjct: 204 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 263

Query: 244 ESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + M ++ ++  Y++++  LCK +   SA  L    + +G    +S    +++GL + G  
Sbjct: 264 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 323

Query: 303 REAKKIQSKI 312
           +EA+ +  ++
Sbjct: 324 KEARDLLDEL 333



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 81/173 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L  LC++   D A+ +   L+  G  P L++YN +I GL KAG+ + A  +
Sbjct: 165 PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALEL 224

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY+TI     R  + +  +     ++  G   +   Y  +I    K
Sbjct: 225 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 284

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                 A D    M+ +G   +  +Y  LI     EG ++ A  LLDE+  +G
Sbjct: 285 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 337



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   ++N +++GL K   T  AL +   +   G  P+++TY+ +  GLC+  R+  A  
Sbjct: 199 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 258

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              ++ D G  PN + Y  I+    + R+    +++ + M   G   +   Y  +I    
Sbjct: 259 AFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 318

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G +KEA D ++++ + GV
Sbjct: 319 YEGLIKEARDLLDELCSRGV 338


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 171/312 (54%), Gaps = 8/312 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+CK    D A++    +   G  P ++T+NI+++ +C  GR   A  
Sbjct: 271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEK 330

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAA 124
           +L ++   G +P+ +T+  ++   F  RK  LG  ++IL  M + G   +   Y  ++  
Sbjct: 331 LLADMLRKGFSPSVVTFNILIN--FLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHG 388

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K  ++  A +Y+E+MV+ G   DIV+YNT++   CK+GK+E A  +L+++  +G    
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV-- 242
             T+  +IDGL KAG    A   L+ M       +   Y+ +V  L ++GK+D AI    
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query: 243 -FESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            FE M V+ ++ T++S++  LCK ++   A   L+  +  G +  +++   +++GL + G
Sbjct: 509 EFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEG 568

Query: 301 CRREAKKIQSKI 312
             +EA ++ +++
Sbjct: 569 MAKEALELLNEL 580



 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 159/310 (51%), Gaps = 7/310 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+M++G CK    +NAL +   L +    P++VTYN +++ LC +G+L+ A  +
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSV---LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +      P+ ITYT +++   R+      +++L  M+ +G T D   Y  ++    K
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL EA  ++  M + G Q +++++N ++   C  G+   A  LL +M ++GF     T
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVT 346

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             ILI+ LC+ G +  A   LE M K G   N  +YN ++    K+ K+D AI   E M 
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMV 406

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++M+  LCK  ++  A ++L      G   +      V+DGL  +G   
Sbjct: 407 SRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTG 466

Query: 304 EAKKIQSKIR 313
           +A K+  ++R
Sbjct: 467 KAIKLLDEMR 476



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 36/297 (12%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N  L  L +    +   +    +  HG VP+++    LI+G C+ G+ R A  IL+ L  
Sbjct: 106 NNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEG 165

Query: 74  SGHAPNAI--------------------------------TYTTIMKCCFRNRKYKLGLE 101
           SG  P+ I                                TY TI++    + K K  +E
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +L  M ++    D   Y  +I A  +   + +A   +++M   G   D+V+YN L+N  C
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           KEG+L+ A   L++M   G + +  TH I++  +C  G    A   L  M + GF  ++ 
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +N +++ L + G +  AI++ E M       +S +Y+ ++H  CK K++  A + L
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYL 402



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 116/241 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   TFNI++N LC+      A+ +   + KHG  P  ++YN L+ G CK  ++  A 
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAI 399

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+ +   G  P+ +TY T++    ++ K +  +EIL+ +  KG +     Y TVI   
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+  +A   +++M    ++ D ++Y++L+    +EGK++ A     E E+ G   + 
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNA 519

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   ++ GLCK      A   L YM   G      +Y  +++ L  +G    A+ +   
Sbjct: 520 VTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNE 579

Query: 246 M 246
           +
Sbjct: 580 L 580



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ML  LCK+   ++A+ +   L   G  P L+TYN +I GL KAG+   A  +
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+ ITY++++    R  K    ++     +R G   +   + +++    K
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCK 531

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
             +   A D++  M+  G +    SY  LI     EG  + A  LL+E+  +G 
Sbjct: 532 TRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 36/226 (15%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           R  + + G + L  M   G   D     T+I  F ++G+ ++A   +E +   G   D++
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVI 173

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEME---------------------KQGFEC------- 183
           +YN +I+ YCK G++  A  +LD M                      KQ  E        
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 184 ----DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D  T+TILI+  C+   +  A   L+ M   G   ++  YN +V+ + K+G++D A
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           I     M       +  T++ ++ ++C   R   A KLL   L+ G
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +++GL K   T  A+++   ++     P+ +TY+ L+ GL + G++  A  
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              E    G  PNA+T+ +IM    + R+    ++ L  M  +G       Y  +I    
Sbjct: 506 FFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLA 565

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G  KEA + + ++   G+
Sbjct: 566 YEGMAKEALELLNELCNKGL 585



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 1/128 (0%)

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
           L+ V  N  +    + G+LE  +  L+ M   G   D    T LI G C+ G  + A   
Sbjct: 100 LEDVESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKI 159

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-KDSFTYSSMVHNLCKAKR 266
           LE +   G   ++  YN ++    K G+I++A++V + M V  D  TY++++ +LC + +
Sbjct: 160 LEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGK 219

Query: 267 LPSASKLL 274
           L  A ++L
Sbjct: 220 LKQAMEVL 227


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 166/310 (53%), Gaps = 4/310 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+C+    D+A+   + L  +G  P  V+YNI++KGLC A R   A  
Sbjct: 225 TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEE 284

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E+G  G  PN +T+  ++    R    +  LE+L  + + G T +   Y  ++ AF 
Sbjct: 285 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 344

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  ++ +A  +++ MV+ G   DIVSYNTL+   C+ G+++ A  LL +++ +G      
Sbjct: 345 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI 404

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF--- 243
           ++  +IDGL KAG  K A   L  M   G   ++  Y+ I   L ++ +I+ AI  F   
Sbjct: 405 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 464

Query: 244 ESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + M ++ ++  Y++++  LCK +   SA  L    + +G    +S    +++GL + G  
Sbjct: 465 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 524

Query: 303 REAKKIQSKI 312
           +EA+ +  ++
Sbjct: 525 KEARDLLDEL 534



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 150/337 (44%), Gaps = 43/337 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT------------------ 47
           + P   T+N ++ GLC    T NAL +   + +   VP++VT                  
Sbjct: 154 VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 213

Query: 48  -----------------YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                            YN+++ G+C+ GR+  A   LK L   G  PN ++Y  ++K  
Sbjct: 214 KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 273

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
               +++   E++  M +KG   +   +  +I+   + G ++ A + +EQ+   G   + 
Sbjct: 274 CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 333

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           +SYN L++ +CK+ K++ A   LD M  +G   D  ++  L+  LC++G +  A   L  
Sbjct: 334 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 393

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           +   G    L +YN ++D L K GK   A+ +   M  K    D  TYS++   LC+  R
Sbjct: 394 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 453

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +  A +        G+R       A++ GL    C+R
Sbjct: 454 IEDAIRAFGKVQDMGIRPNTVLYNAIILGL----CKR 486



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 9/237 (3%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLE 101
           P+++ YN ++ G C AG+L  AR ++ E+      P+A TY T+++  C R R     L 
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTAN-ALA 179

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +L  M R+    D   Y  ++ A  K    K+A   +++M   G   DIV+YN ++N  C
Sbjct: 180 VLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC 239

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           +EG+++ A   L  +   G E +  ++ I++ GLC A   + A   +  M + G   N+ 
Sbjct: 240 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVV 299

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +N ++  L + G ++ A+ V E +       +S +Y+ ++H  CK K++  A   L
Sbjct: 300 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 356



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 81/174 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L  LC++   D A+ +   L+  G  P L++YN +I GL KAG+ + A  +
Sbjct: 366 PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALEL 425

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY+TI     R  + +  +     ++  G   +   Y  +I    K
Sbjct: 426 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 485

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
                 A D    M+ +G   +  +Y  LI     EG ++ A  LLDE+  +G 
Sbjct: 486 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGV 539



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 51/262 (19%)

Query: 17  LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76
           L  L +    D ALR+    ++    P+  T   LIK L  +GR   AR +L   G    
Sbjct: 72  LRSLVRRGELDEALRLVGSARR----PDAGTCAALIKKLSASGRTAEARRVLAACG---- 123

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
            P+ + Y  ++                             GYC         G+L  A  
Sbjct: 124 -PDVMAYNAMVA----------------------------GYCGA-------GQLDAARR 147

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
            + +M    V+ D  +YNTLI   C  G+   A  +LDEM ++    D  T+TIL++  C
Sbjct: 148 LVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATC 204

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSF 252
           K    K A   L+ M   G   ++  YN +V+ + ++G++D AI   +++       ++ 
Sbjct: 205 KRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV 264

Query: 253 TYSSMVHNLCKAKRLPSASKLL 274
           +Y+ ++  LC A+R   A +L+
Sbjct: 265 SYNIVLKGLCTAERWEDAEELM 286


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 175/318 (55%), Gaps = 5/318 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI G   P   TFN +++G CK    D+A ++   +   G  P +VTY+ LI GLCK+ +
Sbjct: 240 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 299

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +L+E+   G  P+A TY+ ++    +  K +   ++L  M   G T D   Y +
Sbjct: 300 FLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSS 359

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I AF K G+L EA   +++M       D+V+YNT+I+  CK GK+  A ++L++M++ G
Sbjct: 360 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESG 419

Query: 181 -FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D  T++ +I+GLCK+  +  A+  L+ M K G + ++  Y  I+D L K G+++ A
Sbjct: 420 DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA 479

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             + + M+      +  TY++++  LCKA+++  A +++     +G          +V+G
Sbjct: 480 EYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 539

Query: 296 LRHSGCRREAKKIQSKIR 313
           L  SG  +EA+++  +++
Sbjct: 540 LCVSGRIKEAQQLVQRMK 557



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 160/313 (51%), Gaps = 5/313 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N++++ LCK      A  + + + + GF P ++T+N L+ G CK G +  AR +
Sbjct: 212 PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 271

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G  PN +TY+ ++    +++K+    E+L  MK +G T D F Y  +I    K
Sbjct: 272 LGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCK 331

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +++EA   + +M   G   D+V Y+++I+ +CK GKL  A   L EM KQ    D  T
Sbjct: 332 ADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT 391

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +  +IDGLCK G I  A++ LE M + G    ++  Y+ +++ L K   +  A  + + M
Sbjct: 392 YNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRM 451

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                  D  TY++++  LCK  RL  A  LL    ++G          ++ GL  +   
Sbjct: 452 CKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKV 511

Query: 303 REAKKIQSKIRMA 315
            EA+++  ++R A
Sbjct: 512 DEAERVMEEMRNA 524



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 154/306 (50%), Gaps = 7/306 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N +L  L + +    A  +FR        P++ +YNI+I G C AG L  A  +L+E+
Sbjct: 79  SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G AP+A T+T I+            ++ L +M   G   +   Y  +IAAF +  +L
Sbjct: 139 KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFARAKKL 195

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA   +E+M   G   ++V+YN L++  CK   + AA  ++ +M + GF  +  T   L
Sbjct: 196 EEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSL 255

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +DG CK GN+  AR  L  M   G   N+  Y+ ++D L K  K   A  V E M+ +  
Sbjct: 256 VDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGV 315

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+FTYS+++H LCKA ++  A ++L     SG         +++     SG   EA+K
Sbjct: 316 TPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQK 375

Query: 308 IQSKIR 313
              ++R
Sbjct: 376 TLQEMR 381



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 7/310 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++NI+++G C       AL +   ++  GF P+  T+  +I  +  AG L  A   
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA--- 166

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  L   G  PN +TYT ++    R +K +  +++L  M+ +G   +   Y  ++ A  K
Sbjct: 167 MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +  +  A D +++M+  G   +++++N+L++ +CK G ++ A  LL  M  +G   +  T
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 286

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLCK+     A+  LE M   G   +   Y+ ++  L K  KI+ A  +   M 
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 346

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D   YSS++H  CK+ +L  A K L    K            V+DGL   G   
Sbjct: 347 GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 406

Query: 304 EAKKIQSKIR 313
           EA+ I  +++
Sbjct: 407 EAQVILEQMQ 416



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 3/208 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTAR 65
           +P   T+N +++GLCK      A  +   +Q+ G V P++VTY+ +I GLCK+  L  A+
Sbjct: 386 SPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQ 445

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G  P+ +TYTTI+    +  + +    +L  MKR G   +   Y T+I+  
Sbjct: 446 KLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGL 505

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-- 183
            K  ++ EA   ME+M   G   ++V+YNT++N  C  G+++ A  L+  M+    EC  
Sbjct: 506 CKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSP 565

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYM 211
           D  T+  +++ L  +  ++ A   LE M
Sbjct: 566 DAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 4/177 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD+ P   T++ ++NGLCK+     A ++   + K G  P++VTY  +I GLCK GRL  
Sbjct: 419 GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEE 478

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A ++L+ +  +G APN +TYTT++    + RK      ++  M+  G   +   Y T++ 
Sbjct: 479 AEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVN 538

Query: 124 AFVKIGRLKEATDYMEQMVTDG---VQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
                GR+KEA   +++M  DG      D  +Y T++N       ++ A  LL++M+
Sbjct: 539 GLCVSGRIKEAQQLVQRM-KDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMK 594



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            ++ K  L     +     G++   F + +++   V+  + +EA D     +    + D+
Sbjct: 53  LKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDV 112

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            SYN +I+ +C  G L AA  LL+EM+  GF  D +THT +I  +  AG++ GA  HL  
Sbjct: 113 CSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRS 172

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M   G D N+  Y  ++    +  K++ A+ + E M  +    +  TY+ +V  LCK   
Sbjct: 173 M---GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 229

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           + +A  ++   ++ G         ++VDG    G   +A+K+
Sbjct: 230 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 271


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 155/300 (51%), Gaps = 5/300 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   TFNI++N LCK       +R+F  ++  G  P+ VTYNILI  LC  G+L  A 
Sbjct: 401 LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNAL 460

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKE+  +G   + +TY TI+    +  + +   E+   M   G +     + T+I   
Sbjct: 461 DLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGL 520

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ +AT+ +EQMV +G+Q   ++YN+++  YCK+G L+ A  +L+ M   GFE D 
Sbjct: 521 CKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDV 580

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GLCKAG  + A   L  M   G     +AYN ++  L +   +  A+++F  
Sbjct: 581 VTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFRE 640

Query: 246 M----EVKDSFTYSSMVHNLCK-AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M    E  D+ TY  +   LC+    +  A   L+  +  G     S+ + + +GL + G
Sbjct: 641 MTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 700



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 145/281 (51%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T N+++NG CK    ++AL   +     GF P+ VTYN  +  LC+ G +  A  
Sbjct: 262 SPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALK 321

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++  +   GH P+  TY T++ C  +N +      I++ M  +G   D   + T+I A  
Sbjct: 322 VMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALC 381

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
              RL+EA D   ++   G+  D+ ++N LIN  CK G       L +EM+  G   D+ 
Sbjct: 382 SQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEV 441

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ ILID LC  G +  A   L+ M   G   +   YN I+D L K  +I+ A  VF+ M
Sbjct: 442 TYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQM 501

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +     + + T+++++  LCKAKR+  A++L+   +K G++
Sbjct: 502 DAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 542



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 149/297 (50%), Gaps = 8/297 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF  ++ G  +    + ALR+   + + G  P  VT N+LI G CK GR+  A 
Sbjct: 226 VAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDAL 285

Query: 66  -WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +I KE+ D G  P+ +TY T + C  +N      L+++  M ++G+  D F Y TVI  
Sbjct: 286 GYIQKEIAD-GFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINC 344

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G L EA   + QMV  G   D  ++NTLI   C + +LE A  L  E+  +G   D
Sbjct: 345 LSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPD 404

Query: 185 KYTHTILIDGLCKAGNIK-GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
            YT  ILI+ LCK G+   G RL  E M   G   +   YN ++D L   GK+ +A+++ 
Sbjct: 405 VYTFNILINALCKVGDPHLGIRL-FEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLL 463

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + ME     + + TY++++  LCK  R+  A ++       G+         ++DGL
Sbjct: 464 KEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGL 520



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 142/302 (47%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++N L KN   D A  +   +   G +P+  T+N LI  LC   RL  A  +
Sbjct: 333 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDL 392

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +EL   G +P+  T+  ++    +     LG+ +   MK  G   D   Y  +I     
Sbjct: 393 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCS 452

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L  A D +++M ++G     V+YNT+I+  CK+ ++E A  + D+M+  G      T
Sbjct: 453 MGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVT 512

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LIDGLCKA  I  A   +E M K G   +   YN I+    K G +  A ++ E+M 
Sbjct: 513 FNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMT 572

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY ++++ LCKA R   A KLL      G+R    A   V+  L      R
Sbjct: 573 ANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLR 632

Query: 304 EA 305
           +A
Sbjct: 633 DA 634



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 159/322 (49%), Gaps = 8/322 (2%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           I     P   T+N  ++ LC+N +  +AL++   + + G  P++ TYN +I  L K G L
Sbjct: 292 IADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGEL 351

Query: 62  RTARWILKELGDSGHAPNAITYTT-IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             A+ I+ ++ D G  P+  T+ T I+  C +NR  +  L++   +  KG + D + +  
Sbjct: 352 DEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNR-LEEALDLARELTVKGLSPDVYTFNI 410

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K+G         E+M + G   D V+YN LI+  C  GKL  A  LL EME  G
Sbjct: 411 LINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNG 470

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+  +ID LCK   I+ A    + M+  G   +   +N ++D L K  +ID A 
Sbjct: 471 CPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDAT 530

Query: 241 NVFESMEVKD-----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            + E M VK+     + TY+S++ + CK   L  A+ +L +   +G  I       +++G
Sbjct: 531 ELIEQM-VKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLING 589

Query: 296 LRHSGCRREAKKIQSKIRMAKI 317
           L  +G  + A K+   +R+  I
Sbjct: 590 LCKAGRTQVALKLLRGMRIKGI 611



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 136/258 (52%), Gaps = 4/258 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           TA +N +LN L +         ++  +   G  P++VT N LIK LC+A ++RTA  +L+
Sbjct: 160 TAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLE 219

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+     AP+  T+TT+M+        +  L + + M   G +        +I  + K+G
Sbjct: 220 EMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMG 279

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A  Y+++ + DG + D V+YNT ++  C+ G +  A  ++D M ++G + D +T+ 
Sbjct: 280 RVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYN 339

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            +I+ L K G +  A+  +  M   G   +   +N ++  L    +++ A+++   + VK
Sbjct: 340 TVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVK 399

Query: 250 ----DSFTYSSMVHNLCK 263
               D +T++ +++ LCK
Sbjct: 400 GLSPDVYTFNILINALCK 417



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 136/304 (44%), Gaps = 8/304 (2%)

Query: 16  MLNGLCKNRYTDNALRMFR-GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +L  L +    + AL+M    L +  F P    Y  +I+ L  AG       +++E+   
Sbjct: 59  LLTALREQADPEAALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRRE 118

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEIL-SAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           GH   A    + ++   R R++   ++++ + +   G   D   Y  ++    +  R+K 
Sbjct: 119 GHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKL 178

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
                 +M   G+Q D+V+ NTLI   C+  ++  A L+L+EM       D+ T T L+ 
Sbjct: 179 LESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQ 238

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF- 252
           G  + G+I+ A      M + G        N +++   K G+++ A+   +  E+ D F 
Sbjct: 239 GFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQK-EIADGFE 297

Query: 253 ----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               TY++ VH LC+   +  A K++   L+ G          V++ L  +G   EAK I
Sbjct: 298 PDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGI 357

Query: 309 QSKI 312
            +++
Sbjct: 358 VNQM 361



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 1/157 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +L   CK      A  +   +  +GF  ++VTY  LI GLCKAGR
Sbjct: 536 MVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 595

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+ +   G  P    Y  +++  FR    +  L +   M   G   D   Y  
Sbjct: 596 TQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKI 655

Query: 121 VIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           V     +  G +KEA D++ +MV  G   +  S+  L
Sbjct: 656 VFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRML 692


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 169/312 (54%), Gaps = 8/312 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+CK    D A++    +   G  P ++T+NI+++ +C  GR   A  
Sbjct: 271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEK 330

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAA 124
           +L ++   G +P+ +T+  ++   F  RK  LG  ++IL  M + G   +   Y  ++  
Sbjct: 331 LLADMLRKGFSPSVVTFNILIN--FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K  ++  A +Y+E+MV+ G   DIV+YNT++   CK+GK+E A  +L+++  +G    
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  +IDGL KAG    A   L+ M       +   Y+ +V  L ++GK+D AI  F 
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             E      ++ T++S++  LCK+++   A   L+  +  G +  +++   +++GL + G
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568

Query: 301 CRREAKKIQSKI 312
             +EA ++ +++
Sbjct: 569 MAKEALELLNEL 580



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 159/310 (51%), Gaps = 7/310 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+M++G CK    +NAL +   L +    P++VTYN +++ LC +G+L+ A  +
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSV---LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +      P+ ITYT +++   R+      +++L  M+ +G T D   Y  ++    K
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL EA  ++  M + G Q +++++N ++   C  G+   A  LL +M ++GF     T
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVT 346

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             ILI+ LC+ G +  A   LE M + G   N  +YN ++    K+ K+D AI   E M 
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMV 406

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++M+  LCK  ++  A ++L      G   +      V+DGL  +G   
Sbjct: 407 SRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTG 466

Query: 304 EAKKIQSKIR 313
           +A K+  ++R
Sbjct: 467 KAIKLLDEMR 476



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 36/284 (12%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI----- 81
           +   +    +  HG VP+++    LI+G C+ G+ R A  IL+ L  SG  P+ I     
Sbjct: 119 EEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVM 178

Query: 82  ---------------------------TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
                                      TY TI++    + K K  +E+L  M ++    D
Sbjct: 179 ISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPD 238

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
              Y  +I A  +   +  A   +++M   G   D+V+YN L+N  CKEG+L+ A   L+
Sbjct: 239 VITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLN 298

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +M   G + +  TH I++  +C  G    A   L  M + GF  ++  +N +++ L + G
Sbjct: 299 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG 358

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +  AI++ E M       +S +Y+ ++H  CK K++  A + L
Sbjct: 359 LLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYL 402



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 118/241 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   TFNI++N LC+      A+ +   + +HG  P  ++YN L+ G CK  ++  A 
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAI 399

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+ +   G  P+ +TY T++    ++ K +  +EIL+ +  KG +     Y TVI   
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+  +A   +++M    ++ D ++Y++L+    +EGK++ A     E E+ G   + 
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNA 519

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   ++ GLCK+     A   L +M   G   N  +Y  +++ L  +G    A+ +   
Sbjct: 520 VTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNE 579

Query: 246 M 246
           +
Sbjct: 580 L 580



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 83/174 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ML  LCK+   ++A+ +   L   G  P L+TYN +I GL KAG+   A  +
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+ ITY++++    R  K    ++     +R G   +   + +++    K
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK 531

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
             +   A D++  M+  G + +  SY  LI     EG  + A  LL+E+  +G 
Sbjct: 532 SRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           R  + + G + L  M   G   D     T+I  F ++G+ ++A   +E +   G   D++
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YN +I+ YCK G++  A  +LD M       D  T+  ++  LC +G +K A   L+ M
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            +     ++  Y  +++   +D  + HA+ + + M       D  TY+ +V+ +CK  RL
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 268 PSASKLLLSCLKSG 281
             A K L     SG
Sbjct: 291 DEAIKFLNDMPSSG 304



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 7/154 (4%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            V+ G L+E   ++E MV  G   DI+   TLI  +C+ GK   A  +L+ +E  G   D
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ ++I G CKAG I  A   L  ++++    ++  YN I+  L   GK+  A+ V +
Sbjct: 172 VITYNVMISGYCKAGEINNA---LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 245 SMEVKDSF----TYSSMVHNLCKAKRLPSASKLL 274
            M  +D +    TY+ ++   C+   +  A KLL
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL 262



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +++GL K   T  A+++   ++     P+ +TY+ L+ GL + G++  A  
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              E    G  PNA+T+ +IM    ++R+    ++ L  M  +G   +   Y  +I    
Sbjct: 506 FFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G  KEA + + ++   G+
Sbjct: 566 YEGMAKEALELLNELCNKGL 585



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
           V     L+ V  N  +    + G+LE  +  L+ M   G   D    T LI G C+ G  
Sbjct: 94  VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKT 153

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-KDSFTYSSMVHN 260
           + A   LE +   G   ++  YN ++    K G+I++A++V + M V  D  TY++++ +
Sbjct: 154 RKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRS 213

Query: 261 LCKAKRLPSASKLL 274
           LC + +L  A ++L
Sbjct: 214 LCDSGKLKQAMEVL 227


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 147/276 (53%), Gaps = 10/276 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGL    + D+A R+F  ++     P++VTYN +IKG CKAG+ + A 
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 277

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+++   GH  + ITY T+++ C+ +  +   + +   M  KG       +  VI   
Sbjct: 278 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 337

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L E     E M+  G + ++  Y  LI+ Y K G +E A  LL  M  +GF+ D 
Sbjct: 338 CKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDV 397

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINV 242
            T++++++GLCK G ++ A   L+Y +   FD    N   Y+ ++D LGK G++D A  +
Sbjct: 398 VTYSVVVNGLCKNGRVEEA---LDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 454

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           FE M  K    DS+ Y++++    K +++  A  L 
Sbjct: 455 FEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 490



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F++++ GLCK    +    +F  + + G  P +  Y +LI G  K+G +  A  +L  +
Sbjct: 329 AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM 388

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  P+ +TY+ ++    +N + +  L+     +  G   +   Y ++I    K GR+
Sbjct: 389 IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRV 448

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHT 189
            EA    E+M   G   D   YN LI+ + K  K++ A  L   ME++   CD+  YT+T
Sbjct: 449 DEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEE-GCDQTVYTYT 507

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SM 246
           IL+ G+ K    + A    + M   G       +  +   L   GK+  A  + +    M
Sbjct: 508 ILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPM 567

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            V        M++ LCKA R+  A KL     + G  +    +  +++ LR  G
Sbjct: 568 GVILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVG 621



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 4/277 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++K  F   +   N LIK   K G +    W+ +++ ++G  P   TY  +M        
Sbjct: 178 IKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMF 237

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                 +   M+      D   Y T+I  + K G+ ++A + +  M T G + D ++Y T
Sbjct: 238 VDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMT 297

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +I     +    +   L  EM+++G +   +  +++I GLCK G +       E M + G
Sbjct: 298 MIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKG 357

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              N+  Y  ++D   K G ++ AI +   M  +    D  TYS +V+ LCK  R+  A 
Sbjct: 358 SKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEAL 417

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               +C   G+ I      +++DGL  +G   EA+++
Sbjct: 418 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 454



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 2/246 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+++++NGLCKN   + AL  F   +  G     + Y+ LI GL KAGR
Sbjct: 388 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGR 447

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYC 119
           +  A  + +E+ + G   ++  Y  ++    ++RK    + +   M + +G     + Y 
Sbjct: 448 VDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYT 507

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +++   K  R +EA    + M+  G+      +  L    C  GK+  A  +LDE+   
Sbjct: 508 ILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPM 567

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D      +I+ LCKAG IK A    + + + G +        +++ L K GK D A
Sbjct: 568 GVILDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLA 626

Query: 240 INVFES 245
           + +  S
Sbjct: 627 MKLMHS 632


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 147/276 (53%), Gaps = 10/276 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGL    + D+A R+F  ++     P++VTYN +IKG CKAG+ + A 
Sbjct: 200 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 259

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+++   GH  + ITY T+++ C+ +  +   + +   M  KG       +  VI   
Sbjct: 260 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 319

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L E     E M+  G + ++  Y  LI+ Y K G +E A  LL  M  +GF+ D 
Sbjct: 320 CKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDV 379

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINV 242
            T++++++GLCK G ++ A   L+Y +   FD    N   Y+ ++D LGK G++D A  +
Sbjct: 380 VTYSVVVNGLCKNGRVEEA---LDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 436

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           FE M  K    DS+ Y++++    K +++  A  L 
Sbjct: 437 FEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 472



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F++++ GLCK    +    +F  + + G  P +  Y +LI G  K+G +  A  +L  +
Sbjct: 311 AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM 370

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  P+ +TY+ ++    +N + +  L+     +  G   +   Y ++I    K GR+
Sbjct: 371 IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRV 430

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHT 189
            EA    E+M   G   D   YN LI+ + K  K++ A  L   ME++   CD+  YT+T
Sbjct: 431 DEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEE-GCDQTVYTYT 489

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SM 246
           IL+ G+ K    + A    + M   G       +  +   L   GK+  A  + +    M
Sbjct: 490 ILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPM 549

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            V        M++ LCKA R+  A KL     + G  +    +  +++ LR  G
Sbjct: 550 GVILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVG 603



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 4/277 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++K  F   +   N LIK   K G +    W+ +++ ++G  P   TY  +M        
Sbjct: 160 IKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMF 219

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                 +   M+      D   Y T+I  + K G+ ++A + +  M T G + D ++Y T
Sbjct: 220 VDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMT 279

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +I     +    +   L  EM+++G +   +  +++I GLCK G +       E M + G
Sbjct: 280 MIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKG 339

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              N+  Y  ++D   K G ++ AI +   M  +    D  TYS +V+ LCK  R+  A 
Sbjct: 340 SKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEAL 399

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               +C   G+ I      +++DGL  +G   EA+++
Sbjct: 400 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 436



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 2/246 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+++++NGLCKN   + AL  F   +  G     + Y+ LI GL KAGR
Sbjct: 370 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGR 429

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYC 119
           +  A  + +E+ + G   ++  Y  ++    ++RK    + +   M + +G     + Y 
Sbjct: 430 VDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYT 489

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +++   K  R +EA    + M+  G+      +  L    C  GK+  A  +LDE+   
Sbjct: 490 ILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPM 549

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D      +I+ LCKAG IK A    + + + G +        +++ L K GK D A
Sbjct: 550 GVILDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLA 608

Query: 240 INVFES 245
           + +  S
Sbjct: 609 MKLMHS 614


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 171/325 (52%), Gaps = 7/325 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++ G+CK    D A  M R L+  G  P++++YNIL++ L   G+
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGK 313

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ ++      PN +TY+ ++    R+ K +  + +L  MK KG T D + Y  
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IAAF + GRL  A +++E M++DG   DIV+YNT++   CK GK + A  +  ++ + G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  ++  +   L  +G+ I+   + LE M+  G D +   YN ++  L ++G +D A
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEA 492

Query: 240 INVFESM---EVKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M   E   S  TY+ ++   CKA R+  A  +L S + +G R  ++    +++G
Sbjct: 493 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552

Query: 296 LRHSGCRREAKKIQSK-IRMAKISH 319
           +  +G R EA ++ +  +R+  IS 
Sbjct: 553 IGFAGYRAEAMELANDLVRIDAISE 577



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N ++NG CK    D+A R+   ++   F P+ VTYNI+I  LC  G+L  A  +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +L      P  ITYT +++           L+++  M  +G   D F Y T+I    K
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A + +  +   G + D++SYN L+     +GK E    L+ +M  +  + +  T
Sbjct: 276 EGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILI  LC+ G I+ A   L+ M + G   +  +Y+ ++    ++G++D AI   E+M 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               + D   Y++++  LCK  +   A ++     + G     S+   +   L  SG
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 134/299 (44%), Gaps = 38/299 (12%)

Query: 21  CKNRYTDNALRMFRGLQKHGFVPELV---------------------------------- 46
           C++     +L +   + + G+ P+++                                  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            YN LI G CK  R+  A  +L  +     +P+ +TY  ++       K  L L++L+ +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
                      Y  +I A +  G + EA   M++M++ G++ D+ +YNT+I   CKEG +
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A+ ++  +E +G E D  ++ IL+  L   G  +     +  M     D N+  Y+ +
Sbjct: 280 DRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +  L +DGKI+ A+N+ + M+ K    D+++Y  ++   C+  RL  A + L + +  G
Sbjct: 340 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG 398



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 11/228 (4%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           R+  Y   L +L  M RKGY  D      +I  F  +  + +A   ME +   G Q D+ 
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVF 159

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YN LIN +CK  +++ A  +LD M  + F  D  T+ I+I  LC  G +    L L+ +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLD---LALKVL 216

Query: 212 NKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           N++  D+    +  Y  +++    +G +D A+ + + M  +    D FTY++++  +CK 
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             +  A +++ +    G      +   ++  L + G   E +K+ +K+
Sbjct: 277 GMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKM 324


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 156/300 (52%), Gaps = 5/300 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   TFNI++N LCK      ALR+F  ++  G  P+ VTYN LI  LC  G+L  A 
Sbjct: 391 LSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKAL 450

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKE+  +G   + +TY TI+    +  + +   E+   M  +G + +   + T+I   
Sbjct: 451 DLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 510

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ +A   + QM+++G+Q + ++YN+++  YCK+G ++ A  +L  M   GFE D 
Sbjct: 511 CKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDV 570

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GLCKAG  + A   L  M   G  +  +AYN ++  L +      A+N+F  
Sbjct: 571 VTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFRE 630

Query: 246 M----EVKDSFTYSSMVHNLCK-AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M    E  D+FTY  +   LC+    +  A   LL  +  G     S+ + + +GL + G
Sbjct: 631 MTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG 690



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 148/281 (52%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T N+++NG CK    ++AL   +    +GF P+ +TYN  + GLC+ G +  A  
Sbjct: 252 SPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALK 311

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++  +   GH P+  TY  ++ C  +N + +    IL+ M  +G   D   + T+I A  
Sbjct: 312 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALC 371

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
              RL+EA D   Q+   G+  D+ ++N LIN  CK G  + A  L +EM+  G   D+ 
Sbjct: 372 SGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEV 431

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LID LC  G +  A   L+ M   G   +   YN I+D L K  +I+ A  VF+ M
Sbjct: 432 TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           ++    +++ T+++++  LCK KR+  A++L+   +  G++
Sbjct: 492 DLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQ 532



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 156/343 (45%), Gaps = 39/343 (11%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           I     P   T+N  +NGLC+N +  +AL++   + + G  P++ TYNI++  LCK G+L
Sbjct: 282 IANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 341

Query: 62  RTARWILKELGDSGHAPNAITYTT-IMKCCFRNR-------------------------- 94
             A+ IL ++ + G  P+  T+ T I+  C  NR                          
Sbjct: 342 EEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNIL 401

Query: 95  --------KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                     +L L +   MK  G T D   Y T+I     +G+L +A D +++M + G 
Sbjct: 402 INALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGC 461

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
               V+YNT+I+  CK+ ++E A  + D+M+ QG   +  T   LIDGLCK   I  A  
Sbjct: 462 PRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQ 521

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            +  M   G   N   YN I+    K G I  A ++ ++M       D  TY ++++ LC
Sbjct: 522 LISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLC 581

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           KA R   A KLL      G+R    A   V+  L      R+A
Sbjct: 582 KAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDA 624



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 145/300 (48%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   TF  ++ G  +      ALR+   + + G  P  VT N+LI G CK GR
Sbjct: 211 MSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGR 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   +++   +G  P+ ITY T +    +N      L+++  M ++G+  D F Y  
Sbjct: 271 VEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNI 330

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+    K G+L+EA   + QMV  G   DI ++NTLI   C   +LE A  L  ++  +G
Sbjct: 331 VVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKG 390

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D YT  ILI+ LCK G+ + A    E M   G   +   YN ++D L   GK+  A+
Sbjct: 391 LSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKAL 450

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + ME     + + TY++++  LCK  R+  A ++       G+         ++DGL
Sbjct: 451 DLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 510



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 167/349 (47%), Gaps = 39/349 (11%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N +LN L +         ++  + + G  P++VT+N L+K LC+A ++RTA  +L+
Sbjct: 150 TVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLE 209

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  SG AP+  T+TT+M+        K  L + + M   G +        +I  + K+G
Sbjct: 210 EMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLG 269

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A  Y++Q + +G + D ++YNT +N  C+ G +  A  ++D M ++G + D +T+ 
Sbjct: 270 RVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYN 329

Query: 190 ILIDGLCKAGNIKGARLHLEYM----------------------NKI------------- 214
           I+++ LCK G ++ A+  L  M                      N++             
Sbjct: 330 IVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLK 389

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G   ++  +N +++ L K G    A+ +FE M+      D  TY++++ NLC   +L  A
Sbjct: 390 GLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKA 449

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
             LL     +G          ++DGL       EA+++  ++ +  IS 
Sbjct: 450 LDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 498



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 4/238 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G   + V YN L+  L +  +++    +  E+G+ G  P+ +T+ T+MK   R  + +  
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           + +L  M   G   D   + T++  FV+ G +K A     +M+  G     V+ N LIN 
Sbjct: 205 VLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLING 264

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           YCK G++E A   + +    GFE D+ T+   ++GLC+ G++  A   ++ M + G D +
Sbjct: 265 YCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPD 324

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
           +  YN +V+ L K+G+++ A  +   M     + D  T+++++  LC   RL  A  L
Sbjct: 325 VFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDL 382



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 1/157 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N +L   CK      A  + + +  +GF  ++VTY  LI GLCKAGR
Sbjct: 526 MISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGR 585

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+ +   G       Y  +++  FR    +  + +   M   G   D F Y  
Sbjct: 586 TQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKI 645

Query: 121 VIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           V     +  G ++EA D++ +MV  G   +  S+  L
Sbjct: 646 VFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRML 682


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 166/310 (53%), Gaps = 4/310 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+C+    D+A+   + L  +G  P  V+YNI++KGLC A R   A  
Sbjct: 227 TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEE 286

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E+G  G  PN +T+  ++    R    +  LE+L  + + G + +   Y  ++ AF 
Sbjct: 287 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFC 346

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  ++ +A  +++ MV+ G   DIVSYNTL+   C+ G+++ A  LL +++ +G      
Sbjct: 347 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI 406

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF--- 243
           ++  +IDGL KAG  K A   L  M   G   ++  Y+ I   L ++ +I+ AI  F   
Sbjct: 407 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 466

Query: 244 ESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + M ++ ++  Y++++  LCK +   SA  L    + +G    +S    +++GL + G  
Sbjct: 467 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 526

Query: 303 REAKKIQSKI 312
           +EA+ +  ++
Sbjct: 527 KEARDLLDEL 536



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 147/331 (44%), Gaps = 43/331 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT------------------------ 47
           T + ++ GLC    T NAL +   + +   VP++VT                        
Sbjct: 162 TCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 221

Query: 48  -----------YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96
                      YN+++ G+C+ GR+  A   LK L   G  PN ++Y  ++K      ++
Sbjct: 222 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 281

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           +   E++  M +KG   +   +  +I+   + G ++ A + +EQ+   G   + +SYN L
Sbjct: 282 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPL 341

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           ++ +CK+ K++ A   LD M  +G   D  ++  L+  LC++G +  A   L  +   G 
Sbjct: 342 LHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 401

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK 272
              L +YN ++D L K GK   A+ +   M  K    D  TYS++   LC+  R+  A +
Sbjct: 402 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 461

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                   G+R       A++ GL    C+R
Sbjct: 462 AFGKVQDMGIRPNTVLYNAIILGL----CKR 488



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 11/238 (4%)

Query: 43  PELVTYNILIKGLCKAGRLRTAR-WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGL 100
           P+++ YN ++ G C AG++  AR W  +   +     +A T  T+++  C R R     L
Sbjct: 126 PDVMAYNAMMAGYCGAGQVDAARRWCAERAVER----DAYTCDTLIRGLCGRGRTAN-AL 180

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
            +L  M R+    D   Y  ++ A  K    K+A   +++M   G   DIV+YN ++N  
Sbjct: 181 AVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGI 240

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           C+EG+++ A   L  +   G E +  ++ I++ GLC A   + A   +  M + G   N+
Sbjct: 241 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 300

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             +N ++  L + G ++ A+ V E +       +S +Y+ ++H  CK K++  A   L
Sbjct: 301 VTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFL 358



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 84/183 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L  LC++   D A+ +   L+  G  P L++YN +I GL KAG+ + A  +
Sbjct: 368 PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALEL 427

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY+TI     R  + +  +     ++  G   +   Y  +I    K
Sbjct: 428 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 487

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                 A D    M+ +G   +  +Y  LI     EG ++ A  LLDE+  +G E     
Sbjct: 488 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGEEILLDV 547

Query: 188 HTI 190
           H I
Sbjct: 548 HLI 550


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 146/256 (57%), Gaps = 4/256 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  M++GLCKN + D A+ +   + K G  P++VTY+ LI G CK GR +TA+ I+  +
Sbjct: 445 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRI 504

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN I Y+T++  C R    K  + I  AM  +G+T D F +  ++ +  K G++
Sbjct: 505 YRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKV 564

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA ++M  M +DG+  + VS++ LIN Y   G+   A+ + DEM K G     +T+  L
Sbjct: 565 AEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSL 624

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           + GLCK G+++ A   L+ ++ +    +   YN ++  + K G +  A+++F  M     
Sbjct: 625 LKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSI 684

Query: 248 VKDSFTYSSMVHNLCK 263
           + DS+TY+S++  LC+
Sbjct: 685 LPDSYTYTSLISGLCR 700



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 154/312 (49%), Gaps = 6/312 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N++++ LC++        + R ++K    P  VTYN LI G    G++  A  +L E+
Sbjct: 305 TYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEM 364

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN +T+  ++        +K  L++   M+ KG T     Y  ++    K    
Sbjct: 365 LSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEF 424

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A  +  +M  +GV +  ++Y  +I+  CK G L+ A +LL+EM K G + D  T++ L
Sbjct: 425 DLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSAL 484

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           I+G CK G  K A+  +  + ++G   N   Y+ ++    + G +  AI ++E+M     
Sbjct: 485 INGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGH 544

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
            +D FT++ +V +LCKA ++  A + +      G+     +   +++G  +SG   +A  
Sbjct: 545 TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS 604

Query: 308 IQSKIRMAKISH 319
           +  +  M K+ H
Sbjct: 605 VFDE--MTKVGH 614



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 4/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L+P   TFN +++G         AL+MF  ++  G  P  V+Y +L+ GLCK   
Sbjct: 364 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAE 423

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR     +  +G     ITYT ++    +N      + +L+ M + G   D   Y  
Sbjct: 424 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 483

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+GR K A + + ++   G+  + + Y+TLI   C+ G L+ A  + + M  +G
Sbjct: 484 LINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 543

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T  +L+  LCKAG +  A   +  M   G   N  +++C+++  G  G+   A 
Sbjct: 544 HTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAF 603

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
           +VF+ M         FTY S++  LCK   L  A K L S
Sbjct: 604 SVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 643



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 147/305 (48%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ATFNI++N LC     + +  + + ++K G+ P +VTYN ++   CK GR + A  +
Sbjct: 231 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 290

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G   +  TY  ++    R+ +   G  +L  M+++    +   Y T+I  F  
Sbjct: 291 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 350

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A+  + +M++ G+  + V++N LI+ +  EG  + A  +   ME +G    + +
Sbjct: 351 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 410

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + +L+DGLCK      AR     M + G       Y  ++D L K+G +D A+ +   M 
Sbjct: 411 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 470

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TYS++++  CK  R  +A +++    + G+         ++      GC +
Sbjct: 471 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 530

Query: 304 EAKKI 308
           EA +I
Sbjct: 531 EAIRI 535



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 143/317 (45%), Gaps = 4/317 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T N +L  + K+    +     + + K    P++ T+NILI  LC  G    + 
Sbjct: 194 FNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSS 253

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++++++  SG+AP  +TY T++    +  ++K  +E+L  MK KG   D   Y  +I   
Sbjct: 254 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 313

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R+ +    +  M    +  + V+YNTLIN +  EGK+  A  LL+EM   G   + 
Sbjct: 314 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 373

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   LIDG    GN K A      M   G   +  +Y  ++D L K+ + D A   +  
Sbjct: 374 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 433

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+         TY+ M+  LCK   L  A  LL    K G+        A+++G    G 
Sbjct: 434 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR 493

Query: 302 RREAKKIQSKIRMAKIS 318
            + AK+I  +I    +S
Sbjct: 494 FKTAKEIVCRIYRVGLS 510



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 4/299 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           + ++I++    +     ++L +FR +  +GF P + T N ++  + K+G   +    LKE
Sbjct: 164 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 223

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +      P+  T+  ++        ++    ++  M++ GY      Y TV+  + K GR
Sbjct: 224 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 283

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            K A + ++ M + GV  D+ +YN LI+  C+  ++   YLLL +M K+    ++ T+  
Sbjct: 284 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 343

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI+G    G +  A   L  M   G   N   +N ++D    +G    A+ +F  ME K 
Sbjct: 344 LINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKG 403

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                 +Y  ++  LCK      A    +   ++GV + +     ++DGL  +G   EA
Sbjct: 404 LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEA 462



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 126/276 (45%), Gaps = 5/276 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN+++  LCK      A    R +   G +P  V+++ LI G   +G    A  +  E+
Sbjct: 550 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 609

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              GH P   TY +++K   +    +   + L ++       D   Y T++ A  K G L
Sbjct: 610 TKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNL 669

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTI 190
            +A     +MV   +  D  +Y +LI+  C++GK   A L   E E +G    +K  +T 
Sbjct: 670 AKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTC 729

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
            +DG+ KAG  K      E M+ +G   ++   N ++D   + GKI+   ++   M  ++
Sbjct: 730 FVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQN 789

Query: 251 S----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 TY+ ++H   K K + ++  L  S + +G+
Sbjct: 790 GGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGI 825



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 119/274 (43%), Gaps = 20/274 (7%)

Query: 55  LCKAGRLRTARWILKEL----GDSGHA------------PNAITYTTIMKCCFRNRKYKL 98
           L +A     AR ILKEL    G S                N   Y  +++   R    + 
Sbjct: 122 LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQD 181

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            LEI   M   G+    +    ++ + VK G       ++++M+   +  D+ ++N LIN
Sbjct: 182 SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILIN 241

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           + C EG  E +  L+ +MEK G+     T+  ++   CK G  K A   L++M   G D+
Sbjct: 242 VLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDA 301

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           ++  YN ++  L +  +I     +   M  +    +  TY+++++      ++  AS+LL
Sbjct: 302 DVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLL 361

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              L  G+        A++DG    G  +EA K+
Sbjct: 362 NEMLSFGLSPNHVTFNALIDGHISEGNFKEALKM 395



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 139/295 (47%), Gaps = 6/295 (2%)

Query: 7    TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            TP   T N M++G  +    +    +   +      P L TYNIL+ G  K   + T+  
Sbjct: 756  TPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFL 815

Query: 67   ILKELGDSGHAPNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +  +G  P+ +T ++ ++  C  N   ++GL+IL A   +G   D + +  +I+  
Sbjct: 816  LYRSIILNGILPDKLTCHSLVLGICESNM-LEIGLKILKAFICRGVEVDRYTFNMLISKC 874

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               G +  A D ++ M + G+ LD  + + ++++  +  + + + ++L EM KQG   + 
Sbjct: 875  CANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPES 934

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              +  LI+GLC+ G+IK A +  E M          A + +V  L K GK D A  +   
Sbjct: 935  RKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRF 994

Query: 246  M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            M     V    ++++++H  CK   +  A +L +     G+++   +   ++ GL
Sbjct: 995  MLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1049



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 126/279 (45%), Gaps = 4/279 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            +I   + P   T + ++ G+C++   +  L++ +     G   +  T+N+LI   C  G 
Sbjct: 820  IILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGE 879

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  A  ++K +   G + +  T   ++    RN +++    +L  M ++G + +   Y  
Sbjct: 880  INWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIG 939

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I    ++G +K A    E+M+   +    V+ + ++    K GK + A LLL  M K  
Sbjct: 940  LINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMK 999

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  + T L+   CK GN+  A      M+  G   +L +YN ++  L   G +  A 
Sbjct: 1000 LVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAF 1059

Query: 241  NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
             ++E M+    + ++ TY +++  L   +   S + ++L
Sbjct: 1060 ELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIIL 1098


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 160/302 (52%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG+CK    D A++    +  +G  P ++T+NI+++ +C  GR   A  +
Sbjct: 227 PDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKL 286

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G +P+ +T+  ++    R       ++IL  M   G T +   Y  ++  F K
Sbjct: 287 LSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCK 346

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A +Y++ MV+ G   DIV+YNTL+   CK+GK++ A  +L+++  +G      T
Sbjct: 347 EKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLIT 406

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +IDGL K G  + A   L+ M + G   ++  Y+ +V  L ++GK+D AI  F  +E
Sbjct: 407 YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLE 466

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 ++ TY+S++  LCK+++   A   L   +    +  ++    +++G+ + G  +
Sbjct: 467 GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAK 526

Query: 304 EA 305
           EA
Sbjct: 527 EA 528



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 154/311 (49%), Gaps = 7/311 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N++++G CK+   DNAL++   L +    P++VTYN +++ LC +G+L+ A  
Sbjct: 124 VPDVITYNVLISGYCKSGEIDNALQV---LDRMNVAPDVVTYNTILRTLCDSGKLKQAME 180

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L         P+ ITYT +++   +       +++L  M+ KG   D   Y  +I    
Sbjct: 181 VLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGIC 240

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GRL EA  ++  M + G Q +++++N ++   C  G+   A  LL +M ++G      
Sbjct: 241 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVV 300

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  ILI+ LC+ G +  A   LE M   G   N  +YN ++    K+ K+D AI   + M
Sbjct: 301 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 360

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             +    D  TY++++  LCK  ++  A ++L      G   +      V+DGL   G  
Sbjct: 361 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 420

Query: 303 REAKKIQSKIR 313
             A K+  ++R
Sbjct: 421 ERAIKLLDEMR 431



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 135/294 (45%), Gaps = 36/294 (12%)

Query: 17  LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76
           L  L +N   ++  +    +   G +P+++    LI+G C+ G+ + A W+++ L  SG 
Sbjct: 64  LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 123

Query: 77  --------------------------------APNAITYTTIMKCCFRNRKYKLGLEILS 104
                                           AP+ +TY TI++    + K K  +E+L 
Sbjct: 124 VPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
              +K    D   Y  +I A  K   + +A   +++M   G + D+V+YN LIN  CKEG
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 243

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           +L+ A   L+ M   G + +  TH I++  +C  G    A   L  M + G   ++  +N
Sbjct: 244 RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 303

Query: 225 CIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +++ L + G +  AI++ E M +     +S +Y+ ++H  CK K++  A + L
Sbjct: 304 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 357



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 119/240 (49%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TFNI++N LC+      A+ +   +  HG  P  ++YN L+ G CK  ++  A  
Sbjct: 296 SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIE 355

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L  +   G  P+ +TY T++    ++ K  + +EIL+ +  KG +     Y TVI    
Sbjct: 356 YLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 415

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G+ + A   +++M   G++ DI++Y++L++   +EGK++ A     ++E  G   +  
Sbjct: 416 KVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAI 475

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  ++ GLCK+     A   L YM           Y  +++ +  +G    A+++   +
Sbjct: 476 TYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 535



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 36/226 (15%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           RN + + G + L +M  +G   D     ++I  F +IG+ K+AT  ME +   G   D++
Sbjct: 69  RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 128

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEME---------------------KQGFEC------- 183
           +YN LI+ YCK G+++ A  +LD M                      KQ  E        
Sbjct: 129 TYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK 188

Query: 184 ----DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D  T+TILI+  CK   +  A   L+ M   G   ++  YN +++ + K+G++D A
Sbjct: 189 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 248

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           I    +M       +  T++ ++ ++C   R   A KLL   L+ G
Sbjct: 249 IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 294



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 81/174 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +L  LCK+   D A+ +   L   G  P L+TYN +I GL K G+   A  +
Sbjct: 367 PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 426

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY++++    R  K    ++    ++  G   +   Y +++    K
Sbjct: 427 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 486

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
             +   A D++  M++   +    +Y  LI     EG  + A  LL+E+  +G 
Sbjct: 487 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            V+ G L++   ++E MV  G   DI+   +LI  +C+ GK + A  +++ +E+ G   D
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ +LI G CK+G I  A   L+ ++++    ++  YN I+  L   GK+  A+ V +
Sbjct: 127 VITYNVLISGYCKSGEIDNA---LQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               K    D  TY+ ++   CK   +  A KLL      G +        +++G+   G
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 243

Query: 301 CRREAKK 307
              EA K
Sbjct: 244 RLDEAIK 250


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 146/256 (57%), Gaps = 4/256 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  M++GLCKN + D A+ +   + K G  P++VTY+ LI G CK GR +TA+ I+  +
Sbjct: 405 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRI 464

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN I Y+T++  C R    K  + I  AM  +G+T D F +  ++ +  K G++
Sbjct: 465 YRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKV 524

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA ++M  M +DG+  + VS++ LIN Y   G+   A+ + DEM K G     +T+  L
Sbjct: 525 AEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSL 584

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           + GLCK G+++ A   L+ ++ +    +   YN ++  + K G +  A+++F  M     
Sbjct: 585 LKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSI 644

Query: 248 VKDSFTYSSMVHNLCK 263
           + DS+TY+S++  LC+
Sbjct: 645 LPDSYTYTSLISGLCR 660



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 154/312 (49%), Gaps = 6/312 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N++++ LC++        + R ++K    P  VTYN LI G    G++  A  +L E+
Sbjct: 265 TYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEM 324

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN +T+  ++        +K  L++   M+ KG T     Y  ++    K    
Sbjct: 325 LSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEF 384

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A  +  +M  +GV +  ++Y  +I+  CK G L+ A +LL+EM K G + D  T++ L
Sbjct: 385 DLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSAL 444

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           I+G CK G  K A+  +  + ++G   N   Y+ ++    + G +  AI ++E+M     
Sbjct: 445 INGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGH 504

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
            +D FT++ +V +LCKA ++  A + +      G+     +   +++G  +SG   +A  
Sbjct: 505 TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS 564

Query: 308 IQSKIRMAKISH 319
           +  +  M K+ H
Sbjct: 565 VFDE--MTKVGH 574



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 147/305 (48%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ATFNI++N LC     + +  + + ++K G+ P +VTYN ++   CK GR + A  +
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G   +  TY  ++    R+ +   G  +L  M+++    +   Y T+I  F  
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A+  + +M++ G+  + V++N LI+ +  EG  + A  +   ME +G    + +
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + +L+DGLCK      AR     M + G       Y  ++D L K+G +D A+ +   M 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TYS++++  CK  R  +A +++    + G+         ++      GC +
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 304 EAKKI 308
           EA +I
Sbjct: 491 EAIRI 495



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 4/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L+P   TFN +++G         AL+MF  ++  G  P  V+Y +L+ GLCK   
Sbjct: 324 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAE 383

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR     +  +G     ITYT ++    +N      + +L+ M + G   D   Y  
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 443

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+GR K A + + ++   G+  + + Y+TLI   C+ G L+ A  + + M  +G
Sbjct: 444 LINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 503

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T  +L+  LCKAG +  A   +  M   G   N  +++C+++  G  G+   A 
Sbjct: 504 HTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAF 563

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
           +VF+ M         FTY S++  LCK   L  A K L S
Sbjct: 564 SVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 603



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 143/317 (45%), Gaps = 4/317 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T N +L  + K+    +     + + K    P++ T+NILI  LC  G    + 
Sbjct: 154 FNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSS 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++++++  SG+AP  +TY T++    +  ++K  +E+L  MK KG   D   Y  +I   
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 273

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R+ +    +  M    +  + V+YNTLIN +  EGK+  A  LL+EM   G   + 
Sbjct: 274 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   LIDG    GN K A      M   G   +  +Y  ++D L K+ + D A   +  
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 393

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+         TY+ M+  LCK   L  A  LL    K G+        A+++G    G 
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR 453

Query: 302 RREAKKIQSKIRMAKIS 318
            + AK+I  +I    +S
Sbjct: 454 FKTAKEIVCRIYRVGLS 470



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 4/299 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           + ++I++    +     ++L +FR +  +GF P + T N ++  + K+G   +    LKE
Sbjct: 124 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 183

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +      P+  T+  ++        ++    ++  M++ GY      Y TV+  + K GR
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            K A + ++ M + GV  D+ +YN LI+  C+  ++   YLLL +M K+    ++ T+  
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 303

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI+G    G +  A   L  M   G   N   +N ++D    +G    A+ +F  ME K 
Sbjct: 304 LINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKG 363

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                 +Y  ++  LCK      A    +   ++GV + +     ++DGL  +G   EA
Sbjct: 364 LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEA 422



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 9/311 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN+++  LCK      A    R +   G +P  V+++ LI G   +G    A  +  E+
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              GH P   TY +++K   +    +   + L ++       D   Y T++ A  K G L
Sbjct: 570 TKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNL 629

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTI 190
            +A     +MV   +  D  +Y +LI+  C++GK   A L   E E +G    +K  +T 
Sbjct: 630 AKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTC 689

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
            +DG+ KAG  K      E M+ +G   ++   N ++D   + GKI+   ++   M  ++
Sbjct: 690 FVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQN 749

Query: 251 S----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
                 TY+ ++H   K K + ++  L  S + +G+   K    ++V G+    C     
Sbjct: 750 GGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGI----CESNML 805

Query: 307 KIQSKIRMAKI 317
           +I  KI  A I
Sbjct: 806 EIGLKILKAFI 816



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 139/295 (47%), Gaps = 6/295 (2%)

Query: 7    TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            TP   T N M++G  +    +    +   +      P L TYNIL+ G  K   + T+  
Sbjct: 716  TPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFL 775

Query: 67   ILKELGDSGHAPNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +  +G  P+ +T ++ ++  C  N   ++GL+IL A   +G   D + +  +I+  
Sbjct: 776  LYRSIILNGILPDKLTCHSLVLGICESNM-LEIGLKILKAFICRGVEVDRYTFNMLISKC 834

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               G +  A D ++ M + G+ LD  + + ++++  +  + + + ++L EM KQG   + 
Sbjct: 835  CANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPES 894

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              +  LI+GLC+ G+IK A +  E M          A + +V  L K GK D A  +   
Sbjct: 895  RKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRF 954

Query: 246  M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            M     V    ++++++H  CK   +  A +L +     G+++   +   ++ GL
Sbjct: 955  MLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1009



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 119/274 (43%), Gaps = 20/274 (7%)

Query: 55  LCKAGRLRTARWILKEL----GDSGHA------------PNAITYTTIMKCCFRNRKYKL 98
           L +A     AR ILKEL    G S                N   Y  +++   R    + 
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQD 141

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            LEI   M   G+    +    ++ + VK G       ++++M+   +  D+ ++N LIN
Sbjct: 142 SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILIN 201

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           + C EG  E +  L+ +MEK G+     T+  ++   CK G  K A   L++M   G D+
Sbjct: 202 VLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDA 261

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           ++  YN ++  L +  +I     +   M  +    +  TY+++++      ++  AS+LL
Sbjct: 262 DVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLL 321

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              L  G+        A++DG    G  +EA K+
Sbjct: 322 NEMLSFGLSPNHVTFNALIDGHISEGNFKEALKM 355



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 126/279 (45%), Gaps = 4/279 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            +I   + P   T + ++ G+C++   +  L++ +     G   +  T+N+LI   C  G 
Sbjct: 780  IILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGE 839

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  A  ++K +   G + +  T   ++    RN +++    +L  M ++G + +   Y  
Sbjct: 840  INWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIG 899

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I    ++G +K A    E+M+   +    V+ + ++    K GK + A LLL  M K  
Sbjct: 900  LINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMK 959

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  + T L+   CK GN+  A      M+  G   +L +YN ++  L   G +  A 
Sbjct: 960  LVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAF 1019

Query: 241  NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
             ++E M+    + ++ TY +++  L   +   S + ++L
Sbjct: 1020 ELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIIL 1058


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 163/312 (52%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P    ++ +++GLC+      AL  F+ ++  G   ++ TYN LI GL +AG 
Sbjct: 172 MIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGL 231

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +   W L  + D G +P+A T+T ++    +  K     +IL  M  KG   D   Y T
Sbjct: 232 WKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNT 291

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++     +G+L++AT   E +   G++L++ SYN LIN YCK+ K++ A+ L +EM  +G
Sbjct: 292 LMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKG 351

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+  LI  LC++G ++ A+     M   G    L  Y  ++D L K+G ++ AI
Sbjct: 352 LKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAI 411

Query: 241 NVFESM---EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F+S+   E K +   +S ++  +C+A +L  A K      K+G+     A   +++GL
Sbjct: 412 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 471

Query: 297 RHSGCRREAKKI 308
            + G   EA K+
Sbjct: 472 CNKGMLSEAVKL 483



 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 157/306 (51%), Gaps = 5/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ I++NGLCK R T  A+++   + K     ++ TY ++I  LCK G    A  +  E+
Sbjct: 114 TYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEM 172

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  P+ + Y+++M    R  + K  LE    M+ +G + D + Y ++I    + G  
Sbjct: 173 IGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLW 232

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           KE T ++  MV  G   D  ++  LI+  CKEGK+  A  +L+ M  +G E D  T+  L
Sbjct: 233 KEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTL 292

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           ++GLC  G ++ A    E +   G   N+ +YN +++   KD KID A  +FE M  K  
Sbjct: 293 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGL 352

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
              + TY++++  LC++ R+ +A KL +     G  +  S    ++DGL  +G   EA  
Sbjct: 353 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAID 412

Query: 308 IQSKIR 313
           +   I+
Sbjct: 413 LFQSIK 418



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 139/278 (50%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   TF I+++GLCK      A ++   +   G  P+++TYN L+ GLC  G+
Sbjct: 242 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQ 301

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + + L D G   N  +Y  ++    +++K      +   M+ KG       Y T
Sbjct: 302 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNT 361

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  + GR++ A     +M T G  L + +Y  L++  CK G LE A  L   ++K  
Sbjct: 362 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTE 421

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +    +IL+DG+C+AG ++ A    + ++K G + +  AYN +++ L   G +  A+
Sbjct: 422 HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAV 481

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +   ME K    DS T++ ++ NL K   +  A +LL
Sbjct: 482 KLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLL 519



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 6/280 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NGLC     ++A ++F  L   G    + +YNILI G CK  ++  A  +
Sbjct: 284 PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRL 343

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  P+ +TY T++    ++ + +   ++   M+  G       YC ++    K
Sbjct: 344 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCK 403

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+EA D  + +     + +I  ++ L++  C+ GKLE A+   DE+ K G E D   
Sbjct: 404 NGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIA 463

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + ILI+GLC  G +  A   L  M + G   +   +N I+  L K+ +I  AI + E M 
Sbjct: 464 YNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMR 523

Query: 248 VKDSFTYSSMVHN--LCKAKRLPSASKLLLS---CLKSGV 282
            ++ F+    V +  LC A   P     L+S    L+ GV
Sbjct: 524 NRN-FSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 562



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 9/264 (3%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           K GF P+ VT   L+KG+     +  A  +  E+ + G   +A TY  ++    + RK  
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 98  LGLEILSAMKR--KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
           L +++   MK   KG   D F Y  +I +  K G   EA D   +M+  G+  D+V Y++
Sbjct: 130 LAIKLHEKMKGNCKG---DVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L++  C+ G+L+ A     EME +G   D YT+  LI GL +AG  K     L  M   G
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 246

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
           F  +   +  ++D L K+GK+  A  + E M  K    D  TY+++++ LC   +L  A+
Sbjct: 247 FSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDAT 306

Query: 272 KLLLSCLKSGVRILKSAQKAVVDG 295
           KL  S    G+++   +   +++G
Sbjct: 307 KLFESLADRGIKLNVFSYNILING 330



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 88/187 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+N ++  LC++     A ++F  +Q  G   +L TY +L+ GLCK G L  A 
Sbjct: 352 LKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAI 411

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +  + H PN   ++ ++    R  K +   +    + + G   D   Y  +I   
Sbjct: 412 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 471

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L EA   + QM   G   D +++N +I    KE ++  A  LL+EM  + F  D+
Sbjct: 472 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDE 531

Query: 186 YTHTILI 192
              ++L+
Sbjct: 532 AVTSMLL 538



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 5/205 (2%)

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
           ++G+  D     T++        + +A    ++M   G+  D  +Y  LIN  CK  K  
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            A  L ++M K   + D +T+ ++ID LCK G    A      M   G   ++  Y+ ++
Sbjct: 130 LAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 228 DRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           D L + G++  A+  F+ ME +    D +TY+S++H L +A      +  L   +  G  
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFS 248

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKI 308
                   ++DGL   G   EA++I
Sbjct: 249 PDAFTFTILIDGLCKEGKVGEAQQI 273



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 55/105 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T  +NI++NGLC       A+++   +++ G +P+ +T+N++I+ L K   +  A 
Sbjct: 457 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAI 516

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
            +L+E+ +   +P+    + ++     + ++   L  L    +KG
Sbjct: 517 QLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKG 561


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 146/256 (57%), Gaps = 4/256 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  M++GLCKN + D A+ +   + K G  P++VTY+ LI G CK GR +TA+ I+  +
Sbjct: 405 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRI 464

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN I Y+T++  C R    K  + I  AM  +G+T D F +  ++ +  K G++
Sbjct: 465 YRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKV 524

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA ++M  M +DG+  + VS++ LIN Y   G+   A+ + DEM K G     +T+  L
Sbjct: 525 AEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSL 584

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           + GLCK G+++ A   L+ ++ +    +   YN ++  + K G +  A+++F  M     
Sbjct: 585 LKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSI 644

Query: 248 VKDSFTYSSMVHNLCK 263
           + DS+TY+S++  LC+
Sbjct: 645 LPDSYTYTSLISGLCR 660



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 154/312 (49%), Gaps = 6/312 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N++++ LC++        + R ++K    P  VTYN LI G    G++  A  +L E+
Sbjct: 265 TYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEM 324

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN +T+  ++        +K  L++   M+ KG T     Y  ++    K    
Sbjct: 325 LSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEF 384

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A  +  +M  +GV +  ++Y  +I+  CK G L+ A +LL+EM K G + D  T++ L
Sbjct: 385 DLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSAL 444

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           I+G CK G  K A+  +  + ++G   N   Y+ ++    + G +  AI ++E+M     
Sbjct: 445 INGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGH 504

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
            +D FT++ +V +LCKA ++  A + +      G+     +   +++G  +SG   +A  
Sbjct: 505 TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS 564

Query: 308 IQSKIRMAKISH 319
           +  +  M K+ H
Sbjct: 565 VFDE--MTKVGH 574



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 147/305 (48%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ATFNI++N LC     + +  + + ++K G+ P +VTYN ++   CK GR + A  +
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G   +  TY  ++    R+ +   G  +L  M+++    +   Y T+I  F  
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A+  + +M++ G+  + V++N LI+ +  EG  + A  +   ME +G    + +
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + +L+DGLCK      AR     M + G       Y  ++D L K+G +D A+ +   M 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TYS++++  CK  R  +A +++    + G+         ++      GC +
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 304 EAKKI 308
           EA +I
Sbjct: 491 EAIRI 495



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 4/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L+P   TFN +++G         AL+MF  ++  G  P  V+Y +L+ GLCK   
Sbjct: 324 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAE 383

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR     +  +G     ITYT ++    +N      + +L+ M + G   D   Y  
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 443

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+GR K A + + ++   G+  + + Y+TLI   C+ G L+ A  + + M  +G
Sbjct: 444 LINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 503

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T  +L+  LCKAG +  A   +  M   G   N  +++C+++  G  G+   A 
Sbjct: 504 HTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAF 563

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
           +VF+ M         FTY S++  LCK   L  A K L S
Sbjct: 564 SVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 603



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 143/317 (45%), Gaps = 4/317 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T N +L  + K+    +     + + K    P++ T+NILI  LC  G    + 
Sbjct: 154 FNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSS 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++++++  SG+AP  +TY T++    +  ++K  +E+L  MK KG   D   Y  +I   
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 273

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R+ +    +  M    +  + V+YNTLIN +  EGK+  A  LL+EM   G   + 
Sbjct: 274 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   LIDG    GN K A      M   G   +  +Y  ++D L K+ + D A   +  
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 393

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+         TY+ M+  LCK   L  A  LL    K G+        A+++G    G 
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR 453

Query: 302 RREAKKIQSKIRMAKIS 318
            + AK+I  +I    +S
Sbjct: 454 FKTAKEIVCRIYRVGLS 470



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 4/299 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           + ++I++    +     ++L +FR +  +GF P + T N ++  + K+G   +    LKE
Sbjct: 124 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 183

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +      P+  T+  ++        ++    ++  M++ GY      Y TV+  + K GR
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            K A + ++ M + GV  D+ +YN LI+  C+  ++   YLLL +M K+    ++ T+  
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 303

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI+G    G +  A   L  M   G   N   +N ++D    +G    A+ +F  ME K 
Sbjct: 304 LINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKG 363

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                 +Y  ++  LCK      A    +   ++GV + +     ++DGL  +G   EA
Sbjct: 364 LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEA 422



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 9/311 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN+++  LCK      A    R +   G +P  V+++ LI G   +G    A  +  E+
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              GH P   TY +++K   +    +   + L ++       D   Y T++ A  K G L
Sbjct: 570 TKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNL 629

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTI 190
            +A     +MV   +  D  +Y +LI+  C++GK   A L   E E +G    +K  +T 
Sbjct: 630 AKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTC 689

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
            +DG+ KAG  K      E M+ +G   ++   N ++D   + GKI+   ++   M  ++
Sbjct: 690 FVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQN 749

Query: 251 S----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
                 TY+ ++H   K K + ++  L  S + +G+   K    ++V G+    C     
Sbjct: 750 GGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGI----CESNML 805

Query: 307 KIQSKIRMAKI 317
           +I  KI  A I
Sbjct: 806 EIGLKILKAFI 816



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 139/295 (47%), Gaps = 6/295 (2%)

Query: 7    TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            TP   T N M++G  +    +    +   +      P L TYNIL+ G  K   + T+  
Sbjct: 716  TPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFL 775

Query: 67   ILKELGDSGHAPNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +  +G  P+ +T ++ ++  C  N   ++GL+IL A   +G   D + +  +I+  
Sbjct: 776  LYRSIILNGILPDKLTCHSLVLGICESNM-LEIGLKILKAFICRGVEVDRYTFNMLISKC 834

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               G +  A D ++ M + G+ LD  + + ++++  +  + + + ++L EM KQG   + 
Sbjct: 835  CANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPES 894

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              +  LI+GLC+ G+IK A +  E M          A + +V  L K GK D A  +   
Sbjct: 895  RKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRF 954

Query: 246  M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            M     V    ++++++H  CK   +  A +L +     G+++   +   ++ GL
Sbjct: 955  MLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1009



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 119/274 (43%), Gaps = 20/274 (7%)

Query: 55  LCKAGRLRTARWILKEL----GDSGHA------------PNAITYTTIMKCCFRNRKYKL 98
           L +A     AR ILKEL    G S                N   Y  +++   R    + 
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQD 141

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            LEI   M   G+    +    ++ + VK G       ++++M+   +  D+ ++N LIN
Sbjct: 142 SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILIN 201

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           + C EG  E +  L+ +MEK G+     T+  ++   CK G  K A   L++M   G D+
Sbjct: 202 VLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDA 261

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           ++  YN ++  L +  +I     +   M  +    +  TY+++++      ++  AS+LL
Sbjct: 262 DVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLL 321

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              L  G+        A++DG    G  +EA K+
Sbjct: 322 NEMLSFGLSPNHVTFNALIDGHISEGNFKEALKM 355



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 126/279 (45%), Gaps = 4/279 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            +I   + P   T + ++ G+C++   +  L++ +     G   +  T+N+LI   C  G 
Sbjct: 780  IILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGE 839

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  A  ++K +   G + +  T   ++    RN +++    +L  M ++G + +   Y  
Sbjct: 840  INWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIG 899

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I    ++G +K A    E+M+   +    V+ + ++    K GK + A LLL  M K  
Sbjct: 900  LINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMK 959

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  + T L+   CK GN+  A      M+  G   +L +YN ++  L   G +  A 
Sbjct: 960  LVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAF 1019

Query: 241  NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
             ++E M+    + ++ TY +++  L   +   S + ++L
Sbjct: 1020 ELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIIL 1058


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 156/344 (45%), Gaps = 36/344 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI G   P   T+N ++NGLCK    + A  M   +   G  P+++TY++L+   CKA R
Sbjct: 386 MIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 445

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYC 119
           +  A  +L  +   G  PN +T+ +I+    ++ +     ++   M  K G   D   YC
Sbjct: 446 VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYC 505

Query: 120 TVIAAFVKIGRLKEATDYMEQM--------------------VTDGVQL----------- 148
           T+I    + GR  +A   ++ M                    V+  +Q+           
Sbjct: 506 TLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVP 565

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D V++N LI   CK G  E A  L +EM  +  + D  T   LIDGLCKAG ++ AR  L
Sbjct: 566 DKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDIL 625

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKA 264
           + M  +G   N+  YN +V  L K G+I+ A    E M     V DS TY S+V+ LC+A
Sbjct: 626 DLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRA 685

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            R   A +L+      G          +VDGL  SG   +A  +
Sbjct: 686 SRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729



 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 149/292 (51%), Gaps = 11/292 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   TF  +++GLCK    + A  +   +   G  P +VTYN L+ GLCK+GR
Sbjct: 593 MVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGR 652

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L+E+  SG  P++ITY +++    R  +    L+++S +K  G+  D   Y  
Sbjct: 653 IEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNI 712

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+ ++A   +E+MV  G   D+V+YNTLI+  CK G LE A  L  +M  + 
Sbjct: 713 LVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRV 772

Query: 181 FEC---DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYNCIVDRLGKDGK 235
             C   +  T+++LI+GLCK G I  AR  ++ M +   D   N+  YN  +D L K   
Sbjct: 773 SRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSM 832

Query: 236 IDHAINVFESME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +  A  +  S+         D+ T+S+++  LCK  +   A  +    +  G
Sbjct: 833 MAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGG 884



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 152/311 (48%), Gaps = 11/311 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLR 62
           D+ P   T+N  L+GLCK   T  A  + R L+       P+ VT++ LI GLCK G++ 
Sbjct: 318 DVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQID 377

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +  ++   G+ PN ITY  ++    +  K +    ++ +M  KG T D   Y  ++
Sbjct: 378 EACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLV 437

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-KQGF 181
            AF K  R+ EA + +  M + G   ++V++N++I+  CK  +   A+ + D+M  K G 
Sbjct: 438 DAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGL 497

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             DK T+  LIDGL + G    A   L+ M     D +  A+NC ++ L K G +  A+ 
Sbjct: 498 VPDKITYCTLIDGLFRTGRAGQAEALLDAMP----DPDTYAFNCCINGLSKLGDVSRALQ 553

Query: 242 VFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           V+  M     V D  T++ ++   CKA     AS L    +   ++       A++DGL 
Sbjct: 554 VYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLC 613

Query: 298 HSGCRREAKKI 308
            +G    A+ I
Sbjct: 614 KAGQVEAARDI 624



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 157/312 (50%), Gaps = 11/312 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   TFNI++ G CK    + A  +F  +      P+++T+  LI GLCKAG++  A
Sbjct: 562 ELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAA 621

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R IL  +G+ G  PN +TY  ++    ++ + +   + L  M   G   D   Y +++ A
Sbjct: 622 RDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYA 681

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             +  R  +A   + ++ + G   D V+YN L++   K G+ E A  +L+EM  +G   D
Sbjct: 682 LCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPD 741

Query: 185 KYTHTILIDGLCKAGNIKGA-RLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAIN 241
             T+  LID LCKAG+++ A RLH +  +++      N+  Y+ +++ L K G+ID A  
Sbjct: 742 VVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARE 801

Query: 242 VFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ--KAVV 293
           + + M  K      +  TY+S +  LCK   +  A +L+ S     +R+         ++
Sbjct: 802 LIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLI 861

Query: 294 DGLRHSGCRREA 305
           DGL   G   EA
Sbjct: 862 DGLCKCGQTDEA 873



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 9/315 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN  +NGL K      AL+++  + +   VP+ VT+NILI G CKAG    A  +
Sbjct: 530 PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASAL 589

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+      P+ +T+  ++    +  + +   +IL  M   G   +   Y  ++    K
Sbjct: 590 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCK 649

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR++EA  ++E+MV+ G   D ++Y +L+   C+  + + A  L+ E++  G++ D  T
Sbjct: 650 SGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVT 709

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + IL+DGL K+G  + A   LE M   G   ++  YN ++D L K G ++ A  +   M 
Sbjct: 710 YNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMS 769

Query: 248 -------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS--AQKAVVDGLRH 298
                  V +  TYS +++ LCK  R+  A +L+   ++    +L +     + +DGL  
Sbjct: 770 SRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCK 829

Query: 299 SGCRREAKKIQSKIR 313
                EA ++   +R
Sbjct: 830 QSMMAEACELMRSLR 844



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 146/304 (48%), Gaps = 9/304 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           A +NI+L  LC+   T  AL +FRG + + G  P +VTYN +I GLCK+  L     + +
Sbjct: 181 ADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFE 240

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           EL + GH P+ +TY T++    +    +    +   M  +    +   Y  +I    K+G
Sbjct: 241 ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVG 300

Query: 130 RLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DK 185
           R+ EA + +++M      V  +I++YN+ ++  CK+     A  L+  +         D 
Sbjct: 301 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 360

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T + LIDGLCK G I  A    + M   G+  N+  YN +V+ L K  K++ A  + ES
Sbjct: 361 VTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIES 420

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D  TYS +V   CKA R+  A +LL      G         +++DGL  S  
Sbjct: 421 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDR 480

Query: 302 RREA 305
             EA
Sbjct: 481 SGEA 484



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 141/313 (45%), Gaps = 44/313 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGLCK+      + +F  L + G  P++VTYN LI  LCKAG L  AR
Sbjct: 212 VAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEAR 271

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-------YTFDGF-- 116
            +  ++      PN +TY+ ++    +  +     E++  M RK         T++ F  
Sbjct: 272 RLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLD 331

Query: 117 GYC------------------------------TVIAAFVKIGRLKEATDYMEQMVTDGV 146
           G C                              T+I    K G++ EA    + M+  G 
Sbjct: 332 GLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGY 391

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
             ++++YN L+N  CK  K+E A+ +++ M  +G   D  T+++L+D  CKA  +  A  
Sbjct: 392 VPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALE 451

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNL 261
            L  M   G   N+  +N I+D L K  +   A  +F+ M +K     D  TY +++  L
Sbjct: 452 LLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGL 511

Query: 262 CKAKRLPSASKLL 274
            +  R   A  LL
Sbjct: 512 FRTGRAGQAEALL 524



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 11/316 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P + T+  ++  LC+   TD+AL++   L+  G+ P+ VTYNIL+ GL K+G+
Sbjct: 663 MVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQ 722

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI---LSAMKRKGYTFDGFG 117
              A  +L+E+   GH P+ +TY T++    +    +    +   +S+   +    +   
Sbjct: 723 TEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVT 782

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           Y  +I    K+GR+ EA + +++M+     V  +I++YN+ ++  CK+  +  A  L+  
Sbjct: 783 YSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRS 842

Query: 176 MEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
           +         D  T + LIDGLCK G    A    + M   G+  N+  YN +++ L K 
Sbjct: 843 LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKT 902

Query: 234 GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            K++ A  + ESM  K    D  TYS +V   CKA  +  A +LL      G        
Sbjct: 903 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTF 962

Query: 290 KAVVDGLRHSGCRREA 305
            +++DGL  S    EA
Sbjct: 963 NSIIDGLCKSDQSGEA 978



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 141/297 (47%), Gaps = 41/297 (13%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            ++P T TF+ +++GLCK   TD A  +F  +   G+VP +VTYN+L+ GLCK  ++  A 
Sbjct: 850  VSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAH 909

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +++ + D G  P+ ITY+ ++    +       LE+L  M  +G        CT     
Sbjct: 910  AMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRG--------CTP---- 957

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-KQGFECD 184
                                   ++V++N++I+  CK  +   A+ + D+M  K G   D
Sbjct: 958  -----------------------NVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPD 994

Query: 185  KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            K T+  LIDGL + G    A + L+ M     D +  A+NC ++ L K G +  A++   
Sbjct: 995  KITYCTLIDGLFRTGWAGQAEVLLDAMP----DPDTYAFNCCINGLSKLGDVSRALHRML 1050

Query: 245  SME-VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             +E V D  T++ ++   CKA     AS L    +   ++       A++DGL  +G
Sbjct: 1051 ELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAG 1107



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 8/244 (3%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI G   P   T+N+++NGLCK    + A  M   +   G  P+++TY++L+   CKA  
Sbjct: 880  MIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASH 939

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYC 119
            +  A  +L  +   G  PN +T+ +I+    ++ +     ++   M  K G   D   YC
Sbjct: 940  VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYC 999

Query: 120  TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            T+I    + G   +A   ++ M       D  ++N  IN   K G +  A   + E+E  
Sbjct: 1000 TLIDGLFRTGWAGQAEVLLDAM----PDPDTYAFNCCINGLSKLGDVSRALHRMLELE-- 1053

Query: 180  GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                DK T  ILI G CKAGN + A    E M       ++  +  ++D L K G+++  
Sbjct: 1054 -LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAT 1112

Query: 240  INVF 243
             ++ 
Sbjct: 1113 WDIM 1116



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 138/317 (43%), Gaps = 49/317 (15%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR--LRTARWILK 69
           +FN  LN L K+     A+ +FR        P   TY+ L++   KAG    RT  +  +
Sbjct: 113 SFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRR 172

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA-MKRKGYTFDGFGYCTVIAAFVKI 128
               S    +   Y  +++   R  +    LEI    M R G       Y T+I    K 
Sbjct: 173 IRSSSRSVAD---YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS 229

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
             L    +  E++V  G   D+V+YNTLI+  CK G LE A  L  +M  +    +  T+
Sbjct: 230 NELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTY 289

Query: 189 TILIDGLCKAGNIKGARLHLEYM---------NKIGFDSNLEA----------------- 222
           ++LI+GLCK G I  AR  ++ M         N I ++S L+                  
Sbjct: 290 SVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSL 349

Query: 223 -------------YNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAK 265
                        ++ ++D L K G+ID A +VF+ M     V +  TY+++V+ LCKA 
Sbjct: 350 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 409

Query: 266 RLPSASKLLLSCLKSGV 282
           ++  A  ++ S +  GV
Sbjct: 410 KMERAHAMIESMVDKGV 426


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 152/294 (51%), Gaps = 5/294 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  ++NGLCK    D A R+   + + G  P ++TY  L+ G C+ G L  A  +
Sbjct: 112 PDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVEL 171

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TFDGFGYCTVIAAFV 126
           ++++ + G+ PNAITY  IM      RK    L++   M+  G    D F Y T++ + V
Sbjct: 172 VRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLV 231

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++ +A   +E MV+ G   ++V+Y++L++  CK GKL+ A  LL  M + G   +  
Sbjct: 232 KSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIV 291

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  +IDG CK G I  A   LE M   G   N+  Y  ++D   K GK + AI + E M
Sbjct: 292 TYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 351

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                V + FTY+S++   CK   +  A +LL S ++ G      +   V+ GL
Sbjct: 352 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 405



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 5/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   T++ +L+GLCK    D A  + + + + G  P +VTYN +I G CK GR
Sbjct: 246 MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGR 305

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+E+ D G  PN +TYT ++    +  K +  + ++  M  KGY  + F Y +
Sbjct: 306 IDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNS 365

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F K   ++ A   +  M+  G   ++VSYNT+I   CK  K+    LLL++M    
Sbjct: 366 LLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNN 425

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T   +ID +CK   +  A      + + G   NL  YN +V  L K  + D A 
Sbjct: 426 CVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE 485

Query: 241 NVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   M  K     D  TY++++  LCK+KR+  A KL L  L  G+
Sbjct: 486 YLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 532



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 147/293 (50%), Gaps = 40/293 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+N M+NGL K+   D+A+R+   +  +GF P + +YN ++ G CKA R+  A W+
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++   G  P+ ++YT                                   TVI    K
Sbjct: 102 LEQMVMRGCPPDVVSYT-----------------------------------TVINGLCK 126

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + ++ EA   M++M+  G Q ++++Y TL++ +C+ G L+ A  L+ +M ++G+  +  T
Sbjct: 127 LDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAIT 186

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +  ++ GLC    +  A    + M + G    ++  Y+ IVD L K GK+D A  + E+M
Sbjct: 187 YNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAM 246

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             K    +  TYSS++H LCKA +L  A+ LL    +SG          ++DG
Sbjct: 247 VSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDG 299



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 158/294 (53%), Gaps = 5/294 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKAGRLRTARW 66
           P   T+N +++GLC  R  D+AL++F+ +++ G  P ++ TY+ ++  L K+G++  A  
Sbjct: 182 PNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 241

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++ +   G +PN +TY++++    +  K      +L  M R G + +   Y T+I    
Sbjct: 242 LVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHC 301

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+GR+ EA   +E+MV  G Q ++V+Y  L++ +CK GK E A  L++ M ++G+  + +
Sbjct: 302 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLF 361

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  L+D  CK   ++ A   L  M + G   N+ +YN ++  L K  K+   + + E M
Sbjct: 362 TYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 421

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                V D  T+++++  +CK  R+  A +L     +SG         ++V GL
Sbjct: 422 LSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 475



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 142/274 (51%), Gaps = 13/274 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   TFN +++ +CK    D A  +F  +Q+ G  P LVTYN L+ GLCK+ R
Sbjct: 421 MLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 480

Query: 61  LRTARWILKELG-DSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDG 115
              A ++L+E+    G +P+ ITY T++    +    +R YKL L++LS     G   D 
Sbjct: 481 FDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS----DGLAPDD 536

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  VI++  K   + EA + +E M+ +G     ++Y TLI+ +CK G L+ A  +L  
Sbjct: 537 VTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 596

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           +  +G   D  T +I ID L K G ++ A   LE M + G   +   YN ++       +
Sbjct: 597 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASR 656

Query: 236 IDHAINVFESMEV----KDSFTYSSMVHNLCKAK 265
            + A+++FE M       D+ TY+++V +L   K
Sbjct: 657 TEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKK 690



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M ++G +     H  ++ GLC AG    A LH   M+K     ++  YN +++ L K  +
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSV-TYNTMINGLSKSDR 59

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           +D AI + E M       + F+Y++++H  CKA R+ +A  LL   +  G      +   
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 292 VVDGL-----RHSGCRREAKKIQ 309
           V++GL         CR   K IQ
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQ 142



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           C  G+   A L   EM K     D  T+  +I+GL K+  +  A   LE M   GF  N+
Sbjct: 21  CDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNV 79

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLS 276
            +YN ++    K  ++++A+ + E M ++    D  +Y+++++ LCK  ++  A +++  
Sbjct: 80  FSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDK 139

Query: 277 CLKSGVRILKSAQKAVVDGLRHSG 300
            ++ G +        +VDG    G
Sbjct: 140 MIQRGCQPNVITYGTLVDGFCRVG 163


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 171/325 (52%), Gaps = 7/325 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++ G+CK    D A  M R L+  G  P++++YNIL++ L   G+
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ ++      PN +TY+ ++    R+ K +  + +L  MK KG T D + Y  
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IAAF + GRL  A +++E M++DG   DIV+YNT++   CK GK + A  +  ++ + G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  ++  +   L  +G+ I+   + LE M+  G D +   YN ++  L ++G +D A
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEA 492

Query: 240 INVFESM---EVKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M   E   S  TY+ ++   CKA R+  A  +L S + +G R  ++    +++G
Sbjct: 493 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552

Query: 296 LRHSGCRREAKKIQSK-IRMAKISH 319
           +  +G R EA ++ +  +R+  IS 
Sbjct: 553 IGFAGYRAEAMELANDLVRIDAISE 577



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N ++NG CK    D+A R+   ++   F P+ VTYNI+I  LC  G+L  A  +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +L      P  ITYT +++           L+++  M  +G   D F Y T+I    K
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A + +  +   G + D++SYN L+     +GK E    L+ +M  +  + +  T
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILI  LC+ G I+ A   L+ M + G   +  +Y+ ++    ++G++D AI   E+M 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               + D   Y++++  LCK  +   A ++     + G     S+   +   L  SG
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 134/299 (44%), Gaps = 38/299 (12%)

Query: 21  CKNRYTDNALRMFRGLQKHGFVPELV---------------------------------- 46
           C++     +L +   + + G+ P+++                                  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            YN LI G CK  R+  A  +L  +     +P+ +TY  ++       K  L L++L+ +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
                      Y  +I A +  G + EA   M++M++ G++ D+ +YNT+I   CKEG +
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A+ ++  +E +G E D  ++ IL+  L   G  +     +  M     D N+  Y+ +
Sbjct: 280 DRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +  L +DGKI+ A+N+ + M+ K    D+++Y  ++   C+  RL  A + L + +  G
Sbjct: 340 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG 398



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 11/228 (4%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           R+  Y   L +L  M RKGY  D      +I  F  +  + +A   ME +   G Q D+ 
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVF 159

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YN LIN +CK  +++ A  +LD M  + F  D  T+ I+I  LC  G +    L L+ +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLD---LALKVL 216

Query: 212 NKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           N++  D+    +  Y  +++    +G +D A+ + + M  +    D FTY++++  +CK 
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             +  A +++ +    G      +   ++  L + G   E +K+ +K+
Sbjct: 277 GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 160/313 (51%), Gaps = 4/313 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G + P   TFN ++NGLCK    ++A +MF  + + G  P+ V+YN L+ G CKAG L  
Sbjct: 219 GGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHE 278

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +  E+   G  P+ +T+T+++    R    +  + ++  M+ +G   + F +  +I 
Sbjct: 279 ALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALID 338

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F + G L +A   M++M    +Q  +V YN LIN YCK G+++ A  L+ EME +G + 
Sbjct: 339 GFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKP 398

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T++ ++ G CK G+   A      M K G   +   Y+ ++  L ++ ++  A  +F
Sbjct: 399 DVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELF 458

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M       D FTY++++   CK   +  A  L    +K GV         ++DGL  S
Sbjct: 459 EKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKS 518

Query: 300 GCRREAKKIQSKI 312
              +EA+++  K+
Sbjct: 519 ARTKEAQRLLFKL 531



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 148/287 (51%), Gaps = 5/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELVTYNILIKGLCKAG 59
           M+   + P   T+NI++  LC     + AL +    ++  G  P +VTYN L+   C+AG
Sbjct: 145 MLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAG 204

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            +  A  ++  + + G  P+ +T+ T++    +  + +   ++   M R+G T DG  Y 
Sbjct: 205 EVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYN 264

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+++ + K G L EA     +M   GV  D+V++ +LI+  C+ G LE A  L+ +M ++
Sbjct: 265 TLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRER 324

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   +++T T LIDG C+ G +  A L ++ M +     ++  YN +++   K G++D A
Sbjct: 325 GLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEA 384

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             +   ME K    D  TYS+++   CK     SA +L    LK GV
Sbjct: 385 RELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGV 431



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 157/320 (49%), Gaps = 19/320 (5%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF  +++G C+N + D+AL   + +++    P +V YN+LI G CK GR+  AR ++ E+
Sbjct: 332 TFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEM 391

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ +TY+TI+    +        E+   M +KG   D   Y ++I    +  RL
Sbjct: 392 EAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRL 451

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +  E+M+  G+Q D  +Y TLI+ +CKEG ++ A  L DEM K+G   D  T+++L
Sbjct: 452 GDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVL 511

Query: 192 IDGLCKAGNIKGAR---LHLEYMNKIGFDSNLEA---------YNCIVDRL---GKDGKI 236
           IDGL K+   K A+     L Y + +  +   EA         +  +V  L      G +
Sbjct: 512 IDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLM 571

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           + A  V++SM  +    D   YS ++H  C+   +  A       L+ G     ++  ++
Sbjct: 572 NQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISL 631

Query: 293 VDGLRHSGCRREAKKIQSKI 312
           V GL   G   EA  +  ++
Sbjct: 632 VRGLFEEGMTVEADNVIQEL 651



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK--CCFRNRKYK 97
           G+ P L+ YN ++  L  A  L +AR +L  +   G APN  TY  +++  C    R+  
Sbjct: 115 GYAPSLLAYNAVLLALSDAS-LPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           LG+ +   M+  G   +   Y T++AAF + G +  A   +  M   GV+  +V++NT++
Sbjct: 174 LGV-VGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVV 232

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           N  CK G++E A  + DEM ++G   D  ++  L+ G CKAG +  A      M + G  
Sbjct: 233 NGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVV 292

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
            ++  +  ++  + + G ++ A+ +   M  +    + FT+++++   C+
Sbjct: 293 PDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCR 342



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 124/248 (50%), Gaps = 6/248 (2%)

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G+AP+ + Y  ++     +        +L++M R G   + + Y  ++ A    G+ +EA
Sbjct: 115 GYAPSLLAYNAVL-LALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 135 TDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
              + + M   G   ++V+YNTL+  +C+ G+++AA  L+  M + G      T   +++
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           GLCKAG ++ AR   + M + G   +  +YN +V    K G +  A+ VF  M     V 
Sbjct: 234 GLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVP 293

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           D  T++S++H +C+A  L  A  L+    + G+R+ +    A++DG   +G   +A    
Sbjct: 294 DVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAM 353

Query: 310 SKIRMAKI 317
            ++R  +I
Sbjct: 354 KEMRECRI 361



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 50/291 (17%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N+++NG CK    D A  +   ++  G  P++VTY+ ++ G CK G   +A 
Sbjct: 361 IQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAF 420

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++   G  P+AITY+++++     R+     E+   M + G   D F Y T+I   
Sbjct: 421 ELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGH 480

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN-----------------LY-------- 160
            K G +++A    ++M+  GV  D+V+Y+ LI+                 LY        
Sbjct: 481 CKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDN 540

Query: 161 ---------CKEGKLEAAYLLLDEMEKQG----------------FECDKYTHTILIDGL 195
                    C+  + ++   LL     +G                ++ D   +++LI G 
Sbjct: 541 IKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGH 600

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           C+ GNI  A    + + + GF  N  +   +V  L ++G    A NV + +
Sbjct: 601 CRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQEL 651


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 166/313 (53%), Gaps = 4/313 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P T  +NIM+NGL K+   D A ++   ++    +P+L TY  L+ GL K+GRL  A 
Sbjct: 699  LVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAF 758

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +  ++ + GH P+ + YT++M    +  K    L I  AM +K    D   Y ++I + 
Sbjct: 759  NMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSL 818

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             K GR++EA  + E  ++ G   ++  Y++LI+ + K+G ++ A  L +EM+++    + 
Sbjct: 819  GKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNI 878

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             T+  L+ GL KAG +  A   LE M K+G   +L  YN ++D +GK G +D A + F+ 
Sbjct: 879  VTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKR 938

Query: 246  ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            M+    V D  T++S++ +L K  +L  A +L  S  + G          ++D L  +G 
Sbjct: 939  MKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGK 998

Query: 302  RREAKKIQSKIRM 314
              EA  I  ++++
Sbjct: 999  VHEAAMIFHEMKV 1011



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 152/301 (50%), Gaps = 4/301 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            +T+++++N LCK+   D AL +F  +++ G  P L  Y  L+  L K  ++  A  I  
Sbjct: 633 VSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFN 692

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           EL +S   P+   Y  ++    ++ +     +++ +MK +    D F Y +++    K G
Sbjct: 693 ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSG 752

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL+EA +   +M  +G + D+V+Y +L+++  K GKL  A ++   M K+    D  T++
Sbjct: 753 RLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYS 812

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LID L K G ++ A    E     G   N+  Y+ ++D  GK G +D A+ +FE M+ +
Sbjct: 813 SLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRR 872

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               +  TY++++  L KA RL  A KLL    K G          ++DG+   G   EA
Sbjct: 873 QCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEA 932

Query: 306 K 306
           +
Sbjct: 933 E 933



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 147/309 (47%), Gaps = 39/309 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++    N + D A+++   ++KH  +P +VTY  L+ GL KAGRL  A  +L+E+
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ +TY+++M   ++  + +  L +   M RKG   D   Y  VI    K   +
Sbjct: 590 EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDV 649

Query: 132 KEATDYMEQMVTDGVQ-----------------------------------LDIVSYNTL 156
            +A D   +M  +G++                                    D   YN +
Sbjct: 650 DQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIM 709

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           +N   K  +++ A  L+D M+ Q    D +T+T L+DGL K+G ++ A      M + G 
Sbjct: 710 VNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH 769

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
           + ++ AY  ++D LGK GK+ HA+ +F +M     V D  TYSS++ +L K  R+  A  
Sbjct: 770 EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYY 829

Query: 273 LLLSCLKSG 281
              + +  G
Sbjct: 830 FFENSISKG 838



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 142/289 (49%), Gaps = 16/289 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF ++++ L K+   D A + F G++     P +VTY  L+ GL KAGR
Sbjct: 313 MIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGR 372

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  E+ ++  +P+AI Y T++    +  +  +   +   MK +G   +   Y  
Sbjct: 373 LEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNI 432

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   K GR  EA      +   G   D+ +YNTLI++  K G+++    ++ EM ++G
Sbjct: 433 MISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492

Query: 181 FECDKYTHTILIDGLCKAGN---IKGARLHLEYMNKIGFDSNLE-AYNCIVDRLGKDGKI 236
            EC       +I     AG+   I+GA   +EY + +GF S  E  YN ++     +G +
Sbjct: 493 GEC-------IISRDSNAGHEGTIEGADRTVEYPS-LGFKSLGEITYNTLMSAFIHNGHV 544

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           D A+ + E M+    +    TY+++V  L KA RL  A  LL    K G
Sbjct: 545 DEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQG 593



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 115/239 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  +N +L  L K  +  +A+ +F  L +    P+  T+ I +    ++GRL  A   
Sbjct: 250 PSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEP 309

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++E+  SG  P   T+T ++    ++       +  + MK    + +   Y T++    K
Sbjct: 310 IQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAK 369

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL+EA +   +M  +    D ++YNTLI+   K G+ + A  L  EM+ +G   +  T
Sbjct: 370 AGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRT 429

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           + I+I  L KAG    A      + + G   ++  YN ++D LGK G++D  + + + M
Sbjct: 430 YNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEM 488



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 116/257 (45%), Gaps = 4/257 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL +F  ++  G  P    YN +++ L K G   +A  +  +LG     P+A T+   + 
Sbjct: 236 ALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVH 295

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R+ +     E +  M + G       +  +I A VK G + EA  +   M       
Sbjct: 296 SFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSP 355

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++V+Y TL+N   K G+LE A  +  EM++     D   +  LIDGL KAG    A    
Sbjct: 356 NVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLF 415

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKA 264
           + M   G   NL  YN ++  LGK G+   A  +F  ++    V D FTY++++  L K 
Sbjct: 416 KEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKG 475

Query: 265 KRLPSASKLLLSCLKSG 281
            ++     ++   ++ G
Sbjct: 476 GQMDKVLAIIKEMVEKG 492



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 39/271 (14%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
           +TYN L+      G +  A  +L+ +      P  +TYTT++                  
Sbjct: 529 ITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLV------------------ 570

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
                   DG G         K GRL EA   + +M   G +  +V+Y++L+  + K  +
Sbjct: 571 --------DGLG---------KAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQ 613

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
            E +  L DEM ++G   D  T++++I+ LCK+ ++  A      M + G +  L  Y  
Sbjct: 614 EEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKT 673

Query: 226 IVDRLGKDGKIDHAINVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++  L KD KID A+ +F    ES  V D+F Y+ MV+ L K+ R+  A KL+ S     
Sbjct: 674 LLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQN 733

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +        +++DGL  SG   EA  + +K+
Sbjct: 734 ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKM 764



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 120/269 (44%), Gaps = 4/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+ +M+  L   + TD  +++   + K G    +     L++       +  A  I  
Sbjct: 182 VGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFN 241

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G  P+   Y  +++   +   Y   + +   + +     D   +   + +F + G
Sbjct: 242 QMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSG 301

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL  A + +++M+  G+   + ++  LI+   K G ++ A    + M+      +  T+T
Sbjct: 302 RLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYT 361

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            L++GL KAG ++ A      M +     +  AYN ++D LGK G+ D A  +F+ M+  
Sbjct: 362 TLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDR 421

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             V +  TY+ M+  L KA R P A +L 
Sbjct: 422 GLVPNLRTYNIMISVLGKAGRQPEAWQLF 450



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 4/232 (1%)

Query: 37  QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96
           Q+ G+   + TY ++IK L  A        IL  +   GH  +    T++++        
Sbjct: 174 QQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNV 233

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
              LEI + MK  G       Y  V+   VK G    A     ++    +Q D  ++   
Sbjct: 234 SGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIF 293

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           ++ + + G+L+ A   + EM K G +   +T T+LID L K+GNI  A      M  +  
Sbjct: 294 VHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRC 353

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKA 264
             N+  Y  +V+ L K G+++ A  VF  M+      D+  Y++++  L KA
Sbjct: 354 SPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKA 405



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 7    TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
             P   T+N +L+GL K    + A ++   ++K G VP+LVTYNILI G+ K G +  A  
Sbjct: 875  PPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAES 934

Query: 67   ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              K + + G  P+ IT+T++++   +  K     E+  +M+ +GY      Y  +I    
Sbjct: 935  YFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILG 994

Query: 127  KIGRLKEATDYMEQM-----VTDGVQLDIV 151
            + G++ EA     +M     + DG+ + I+
Sbjct: 995  RAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            + P   TF  ++  L K      A  +F  +++ G+ P +VTYN+LI  L +AG++  A 
Sbjct: 944  IVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAA 1003

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98
             I  E+   G  P+ IT   IMK     R+ + 
Sbjct: 1004 MIFHEMKVKGCMPDGIT-IGIMKRILSVREQQF 1035



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 4/166 (2%)

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
           DG    + +Y  +I       + +A   +L  M K+G     +  T L+       N+ G
Sbjct: 176 DGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSG 235

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVH 259
           A      M   G + +   YN +++ L K G    A+ VF  +       D+ T+   VH
Sbjct: 236 ALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVH 295

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           +  ++ RL  A++ +   +KSG+         ++D L  SG   EA
Sbjct: 296 SFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEA 341


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 144/256 (56%), Gaps = 4/256 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  M++GLCKN + D A+ M   + K G  P++VTY+ LI G C+ GRL+TA+ I+  +
Sbjct: 405 TYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRI 464

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN I Y+T++  C R    K  + I  AM  +G T D F +  ++ +  K G++
Sbjct: 465 YRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKV 524

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA ++M  M +DG+  + VS++ LIN Y   G+   A+ + DEM K G     +T+  L
Sbjct: 525 AEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSL 584

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           + GLCK G++  A   L+ +  +    +    N ++  + K G +D A+++F  M     
Sbjct: 585 LKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSI 644

Query: 248 VKDSFTYSSMVHNLCK 263
           + DSFTY+S++  LC+
Sbjct: 645 LPDSFTYTSLISGLCR 660



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 153/312 (49%), Gaps = 6/312 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N++++ LC++  +     + R ++K    P  VTYN L+ G    G++  AR +L E+
Sbjct: 265 TYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEM 324

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN +T+  ++        +K  L++   M+ KG       Y  ++    K    
Sbjct: 325 LTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEF 384

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A  +  +M  +GV +  ++Y  +I+  CK G L+ A ++L+EM K G + D  T++ L
Sbjct: 385 DLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSAL 444

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           I+G C+ G +K A+  +  + ++G   N   Y+ ++    + G +   I ++E+M     
Sbjct: 445 INGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGN 504

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D FT++ +V +LCKA ++  A + +      G+     +   +++G   SG   +A  
Sbjct: 505 TPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFS 564

Query: 308 IQSKIRMAKISH 319
           +  +  M K+ H
Sbjct: 565 VFDE--MTKVGH 574



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 134/280 (47%), Gaps = 4/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L+P   TFN +++G         AL+MF  ++  G +   V+Y +L+ GLCK   
Sbjct: 324 MLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAE 383

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR     +  +G     ITYT ++    +N      + +L+ M + G   D   Y  
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSA 443

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F ++GRLK A + + ++   G+  + + Y+TLI   C+ G L+    + + M  +G
Sbjct: 444 LINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEG 503

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T  +L+  LCKAG +  A   +  M   G   N  +++C+++  G  G+   A 
Sbjct: 504 NTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAF 563

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
           +VF+ M         FTY S++  LCK   L +A K L S
Sbjct: 564 SVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKS 603



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 145/305 (47%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ATFNI++N LC       +  + + ++K G+ P +VTYN ++   CK GR + A  +
Sbjct: 191 PDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G   +  TY  ++    R+ +   G  +L  M+++    +   Y T++  F  
Sbjct: 251 LDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSN 310

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A   + +M+T G+  + V++N LI+ +  EG  + A  +   ME +G    + +
Sbjct: 311 EGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVS 370

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + +L+DGLCK      AR     M + G       Y  ++D L K+G +D A+ +   M 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMS 430

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TYS++++  C+  RL +A +++    + G+         ++      GC +
Sbjct: 431 KDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 304 EAKKI 308
           E  +I
Sbjct: 491 ETIRI 495



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 141/317 (44%), Gaps = 4/317 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T N +L  + K+    +     + + K    P++ T+NILI  LC  G  + + 
Sbjct: 154 FNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSS 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++++++  SG+AP  +TY T++    +  ++K  +E+L  M  KG   D   Y  +I   
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDL 273

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R  +    +  M    +  + V+YNTL+N +  EGK+  A  LL+EM   G   + 
Sbjct: 274 CRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNH 333

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   LIDG    GN K A      M   G      +Y  ++D L K+ + D A   +  
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMR 393

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+         TY+ M+  LCK   L  A  +L    K G+        A+++G    G 
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGR 453

Query: 302 RREAKKIQSKIRMAKIS 318
            + AK+I  +I    +S
Sbjct: 454 LKTAKEIVCRIYRVGLS 470



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 135/299 (45%), Gaps = 4/299 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           + F+I++    +     ++L +FR +  +GF P + T N ++  + K+    +    LKE
Sbjct: 124 SVFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKE 183

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +      P+  T+  ++        +K    ++  M++ GY      Y TV+  + K GR
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            K A + ++ M   GV  D+ +YN LI+  C+  +    YLLL +M K+    ++ T+  
Sbjct: 244 FKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNT 303

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           L++G    G +  AR  L  M   G   N   +N ++D    +G    A+ +F  ME K 
Sbjct: 304 LLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKG 363

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                 +Y  ++  LCK      A    +   ++GV + +     ++DGL  +G   EA
Sbjct: 364 LIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEA 422



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 130/287 (45%), Gaps = 5/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    TP   TFN+++  LCK      A    R +   G +P  V+++ LI G   +G 
Sbjct: 499 MILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGE 558

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  E+   GH P   TY +++K   +        + L +++      D     T
Sbjct: 559 GLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNT 618

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K G L +A     +MV   +  D  +Y +LI+  C++GK   A L   E E +G
Sbjct: 619 LITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARG 678

Query: 181 -FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               +K  +T  +DG+ KAG  K      + M+K+G   ++   N ++D   + GKI+  
Sbjct: 679 NLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKT 738

Query: 240 INVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            ++   M  ++      TY+ ++H   K K + ++  L  S + SG+
Sbjct: 739 HDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGI 785



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 138/296 (46%), Gaps = 6/296 (2%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            LT    T N M++G  +    +    +   +      P L TYNIL+ G  K   + T+ 
Sbjct: 715  LTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSF 774

Query: 66   WILKELGDSGHAPNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + + +  SG  P+ +T Y+ I+  C  N   ++GL+IL A   +G   D   +  +I+ 
Sbjct: 775  MLYRSMILSGILPDKLTCYSIILGICESNM-LEIGLKILKAFICRGVEVDRHTFNMLISK 833

Query: 125  FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
                G +  A D +  M + G+ LD  + + ++++  +  + + + ++L EM KQG   +
Sbjct: 834  CCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPE 893

Query: 185  KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
               +  L++GLC+ G+IK A +  E M          A + +V  L K GK D A  +  
Sbjct: 894  SRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLR 953

Query: 245  SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            SM     V    ++++++H  CK   +  A +L +     G+++   +   ++ GL
Sbjct: 954  SMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGL 1009



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 20/274 (7%)

Query: 55  LCKAGRLRTARWILKEL----GDSGHA------------PNAITYTTIMKCCFRNRKYKL 98
           L +A     AR ILKEL    G S                N   +  +++   R    + 
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFVFGALMATYRLCNSNPSVFDILIRVYLREGMIQD 141

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            LEI   M   G+    +    ++ + VK         ++++M+   +  D+ ++N LIN
Sbjct: 142 SLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILIN 201

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           + C EG  + +  L+ +MEK G+     T+  ++   CK G  K A   L++MN  G ++
Sbjct: 202 VLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNA 261

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           ++  YN ++  L +  +      +   M  +    +  TY+++++      ++  A +LL
Sbjct: 262 DVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLL 321

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              L  G+        A++DG    G  +EA K+
Sbjct: 322 NEMLTFGLSPNHVTFNALIDGHISEGNFKEALKM 355



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 117/263 (44%), Gaps = 6/263 (2%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI   + P   T   ++ G+C++   +  L++ +     G   +  T+N+LI   C  G 
Sbjct: 780  MILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGE 839

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  A  ++  +   G + +  T   I+    RN +++    +L  M ++G + +   Y  
Sbjct: 840  INWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIG 899

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++    ++G +K A    E+M+   +    V+ + ++    K GK + A LLL  M K  
Sbjct: 900  LLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMK 959

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  + T L+   CK GN+  A      M+  G   +L +YN ++  L   G +  A 
Sbjct: 960  LVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAF 1019

Query: 241  NVFESMEVKDSF-----TYSSMV 258
             +FE M+ +D F     TY ++V
Sbjct: 1020 ELFEEMK-RDGFLANVTTYKALV 1041


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 148/280 (52%), Gaps = 5/280 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TF ++L   CK     +  ++F  +  +G  P+ + YNILI G  K GR+  A  
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +E+   G  P+  TY +++    +  K K  +E+   M  KG+  D   Y T+I+   
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 127 KIGRLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           K G++ EA + +  +M+  G   + V+YN LIN  CK+  +E AY LL+EM  +G+  D 
Sbjct: 125 KTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDN 184

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  ++ GLC+ G +  A+   + M   G+  ++ AYN ++D L K+GK D A+ +F+ 
Sbjct: 185 ITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKD 244

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +  K    D+ TY+S++  L +   +  A ++    + SG
Sbjct: 245 VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG 284



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 157/308 (50%), Gaps = 4/308 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N ++NGLCK+   + A ++   +   G+VP+ +TYN ++ GLC+ G++  A+    
Sbjct: 149 TVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFD 208

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G++P+ + Y  ++   ++  K    +++   +  KGY  D   Y +++    +  
Sbjct: 209 SMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKS 268

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            + EA +  ++MV  G   +  +Y+ +++ +C+  K++ A+ +L+EM K G   D  T+ 
Sbjct: 269 NMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYN 328

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
           IL+DGLCK   +  A      M   G   ++ +Y+ +++ L K  K+  A  +F+ M   
Sbjct: 329 ILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIER 388

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             V D  T++ ++  LCKA +L  A  LL     SG      A   +++GLR  G   +A
Sbjct: 389 KLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQA 448

Query: 306 KKIQSKIR 313
            ++   ++
Sbjct: 449 DRLTQAMK 456



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 40/352 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY------------ 48
           M+   L P   T+N +LN  CK      A+ +F+ + + GF P++VTY            
Sbjct: 69  MVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGK 128

Query: 49  ------------------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84
                                   N LI GLCK   +  A  +L+E+   G+ P+ ITY 
Sbjct: 129 VTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYN 188

Query: 85  TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           TI+    R  K     +   +M  +GY+ D   Y  ++ A  K G+  EA    + ++  
Sbjct: 189 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAK 248

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G   D V+YN+++    ++  ++ A  +  +M   G   +  T++I++ G C+A  +  A
Sbjct: 249 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDA 308

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
              LE M+KIG   ++  YN ++D L K   +D A  +F +M       D  +YS +++ 
Sbjct: 309 HKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNG 368

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           LCK  ++  A  L    ++  +         ++DGL  +G   EAK +  ++
Sbjct: 369 LCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQM 420



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 127/243 (52%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +N +L+ L K   TD A+++F+ +   G++P+ VTYN ++ GL +   +  A  
Sbjct: 216 SPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 275

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + K++  SG APN  TY+ ++    R +K     ++L  M + G   D   Y  ++    
Sbjct: 276 MFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLC 335

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K   + +A +    MV +G   DIVSY+ ++N  CK  K+  A +L D M ++    D  
Sbjct: 336 KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVV 395

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  IL+DGLCKAG +  A+  L+ M   G   +  AYN +++ L K G+   A  + ++M
Sbjct: 396 TFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAM 455

Query: 247 EVK 249
           + K
Sbjct: 456 KEK 458



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 5/237 (2%)

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
           +PN  T+  ++K   +  K + G ++   M   G + DG  Y  +I  + K GR+ EA  
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
             E+MV+ G++  I +YN+L+N +CKE K++ A  L   M ++GFE D  T++ +I GLC
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 197 KAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDS 251
           K G +  A  +    M + G  +N  AYN +++ L KD  I+ A  + E M     V D+
Sbjct: 125 KTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDN 184

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            TY++++  LC+  ++  A +   S    G      A   ++D L   G   EA K+
Sbjct: 185 ITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 13/290 (4%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N +L+GLC+      A + F  +   G+ P++V YN L+  L K G+   A  
Sbjct: 181 VPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMK 240

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + K++   G+ P+ +TY +I+    R        E+   M   G   +G  Y  V++   
Sbjct: 241 LFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHC 300

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  ++ +A   +E+M   G   D+V+YN L++  CK   ++ A+ L   M   G   D  
Sbjct: 301 RAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIV 360

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +++++++GLCK   +  AR+  + M +     ++  +N ++D L K GK+D A ++ + M
Sbjct: 361 SYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQM 420

Query: 247 E----VKDSFTYSSMVHNLCK------AKRLPSASK---LLLSCLKSGVR 283
                  D   Y+++++ L K      A RL  A K    L  C K+ +R
Sbjct: 421 TCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCFKAPLR 470



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 97/184 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P  AT++I+L+G C+ +  D+A ++   + K G VP++VTYNIL+ GLCK   
Sbjct: 280 MVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNL 339

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   + D+G AP+ ++Y+ ++    +  K      +   M  +    D   +  
Sbjct: 340 VDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNI 399

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+L EA D ++QM   G   D V+YNTL+N   K+G+   A  L   M+++G
Sbjct: 400 LMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459

Query: 181 FECD 184
           F  D
Sbjct: 460 FLSD 463



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 67/116 (57%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   +++++LNGLCK     +A  +F  + +   VP++VT+NIL+ GLCKAG+
Sbjct: 350 MVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGK 409

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           L  A+ +L ++  SG AP+ + Y T+M    +  ++     +  AMK KG+  D F
Sbjct: 410 LDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 465


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 160/302 (52%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG+CK    D A++    +  +G  P ++T+NI+++ +C  GR   A  +
Sbjct: 284 PDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKL 343

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G +P+ +T+  ++    R       ++IL  M   G T +   Y  ++  F K
Sbjct: 344 LSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCK 403

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A +Y++ MV+ G   DIV+YNTL+   CK+GK++ A  +L+++  +G      T
Sbjct: 404 EKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLIT 463

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +IDGL K G  + A   L+ M + G   ++  Y+ +V  L ++GK+D AI  F  +E
Sbjct: 464 YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLE 523

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 ++ TY+S++  LCK+++   A   L   +    +  ++    +++G+ + G  +
Sbjct: 524 GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAK 583

Query: 304 EA 305
           EA
Sbjct: 584 EA 585



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 154/310 (49%), Gaps = 7/310 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N++++G CK+   DNAL++   L +    P++VTYN +++ LC +G+L+ A  +
Sbjct: 182 PDVITYNVLISGYCKSGEIDNALQV---LDRMNVAPDVVTYNTILRTLCDSGKLKQAMEV 238

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L         P+ ITYT +++   +       +++L  M+ KG   D   Y  +I    K
Sbjct: 239 LDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 298

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL EA  ++  M + G Q +++++N ++   C  G+   A  LL +M ++G      T
Sbjct: 299 EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVT 358

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             ILI+ LC+ G +  A   LE M   G   N  +YN ++    K+ K+D AI   + M 
Sbjct: 359 FNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 418

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++  LCK  ++  A ++L      G   +      V+DGL   G   
Sbjct: 419 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 478

Query: 304 EAKKIQSKIR 313
            A K+  ++R
Sbjct: 479 RAIKLLDEMR 488



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 135/294 (45%), Gaps = 36/294 (12%)

Query: 17  LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76
           L  L +N   ++  +    +   G +P+++    LI+G C+ G+ + A W+++ L  SG 
Sbjct: 121 LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 180

Query: 77  --------------------------------APNAITYTTIMKCCFRNRKYKLGLEILS 104
                                           AP+ +TY TI++    + K K  +E+L 
Sbjct: 181 VPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
              +K    D   Y  +I A  K   + +A   +++M   G + D+V+YN LIN  CKEG
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 300

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           +L+ A   L+ M   G + +  TH I++  +C  G    A   L  M + G   ++  +N
Sbjct: 301 RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 360

Query: 225 CIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +++ L + G +  AI++ E M +     +S +Y+ ++H  CK K++  A + L
Sbjct: 361 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 414



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 119/240 (49%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TFNI++N LC+      A+ +   +  HG  P  ++YN L+ G CK  ++  A  
Sbjct: 353 SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIE 412

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L  +   G  P+ +TY T++    ++ K  + +EIL+ +  KG +     Y TVI    
Sbjct: 413 YLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 472

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G+ + A   +++M   G++ DI++Y++L++   +EGK++ A     ++E  G   +  
Sbjct: 473 KVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAI 532

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  ++ GLCK+     A   L YM           Y  +++ +  +G    A+++   +
Sbjct: 533 TYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 592



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 36/226 (15%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           RN + + G + L +M  +G   D     ++I  F +IG+ K+AT  ME +   G   D++
Sbjct: 126 RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 185

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEME---------------------KQGFEC------- 183
           +YN LI+ YCK G+++ A  +LD M                      KQ  E        
Sbjct: 186 TYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK 245

Query: 184 ----DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D  T+TILI+  CK   +  A   L+ M   G   ++  YN +++ + K+G++D A
Sbjct: 246 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 305

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           I    +M       +  T++ ++ ++C   R   A KLL   L+ G
Sbjct: 306 IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 351



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 81/174 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +L  LCK+   D A+ +   L   G  P L+TYN +I GL K G+   A  +
Sbjct: 424 PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 483

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY++++    R  K    ++    ++  G   +   Y +++    K
Sbjct: 484 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 543

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
             +   A D++  M++   +    +Y  LI     EG  + A  LL+E+  +G 
Sbjct: 544 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            V+ G L++   ++E MV  G   DI+   +LI  +C+ GK + A  +++ +E+ G   D
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ +LI G CK+G I  A   L+ ++++    ++  YN I+  L   GK+  A+ V +
Sbjct: 184 VITYNVLISGYCKSGEIDNA---LQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               K    D  TY+ ++   CK   +  A KLL      G +        +++G+   G
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 300

Query: 301 CRREAKK 307
              EA K
Sbjct: 301 RLDEAIK 307


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 157/316 (49%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +LNGLC      +A+++F  + K GF P L+TY  +IKGLCK G    A 
Sbjct: 137 LQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNAL 196

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK++ + G  P+ + Y T++    ++R+    +   S M  +G   +   Y +++  F
Sbjct: 197 QLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGF 256

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +G+L EAT   +QM+   V  + V++  L++  CKEG +  A  + + M + G E D 
Sbjct: 257 CNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDA 316

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT++ L+DG C    +  A+   + M   GF  ++  YN +++   K  +++ A  +   
Sbjct: 317 YTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSE 376

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D+ TYS+++   C+A R   A KL       G+         ++DGL   G 
Sbjct: 377 MYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGH 436

Query: 302 RREAKKIQSKIRMAKI 317
             EA ++   ++ +KI
Sbjct: 437 LDEAFRLLKAMQESKI 452



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 132/267 (49%), Gaps = 4/267 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++ +L+G C     + A  +F+ +     +P  VT+ IL+ GLCK G 
Sbjct: 237 MVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGM 296

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR + + + ++G  P+A TY+ +M       +     ++   M  KG+      Y  
Sbjct: 297 ILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNI 356

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  RL EA   + +M    +  D V+Y+TL+  +C+ G+ + A  L  EM   G
Sbjct: 357 LINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYG 416

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++IL+DGLCK G++  A   L+ M +   + ++  YN ++  +   GK++ A 
Sbjct: 417 LLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAAR 476

Query: 241 NVFESMEVK----DSFTYSSMVHNLCK 263
            +F ++ VK       TY+ M+  L K
Sbjct: 477 ELFSNLFVKGIQPSVVTYTVMISGLLK 503



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 142/298 (47%), Gaps = 4/298 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P T TF I+++GLCK      A R+F  + ++G  P+  TY+ L+ G C   +
Sbjct: 272 MIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQ 331

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +   +   G AP+   Y  ++    ++R+      +LS M  +  T D   Y T
Sbjct: 332 MDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYST 391

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + GR + A    ++M + G+  D ++Y+ L++  CK G L+ A+ LL  M++  
Sbjct: 392 LMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESK 451

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E     + ILI G+C  G ++ AR     +   G   ++  Y  ++  L K+G  + A 
Sbjct: 452 IEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEAC 511

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            +F  M V     +S TY+  +    +     +A +L+   +  G     S  + ++D
Sbjct: 512 EMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 136/320 (42%), Gaps = 45/320 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLC-KNR-YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           M   ++ P   T  I++N LC  NR +   A      + K G  P  VT+  L+ GLC  
Sbjct: 95  MDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSK 154

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
            ++  A  +  E+G  G AP+ ITYTTI+K                            G 
Sbjct: 155 AKIIDAVKLFDEIGKMGFAPSLITYTTIIK----------------------------GL 186

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           C       KIG    A   +++M   G + D+V+YNT+I+  CK+ +   A     EM  
Sbjct: 187 C-------KIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVD 239

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           QG   +  T++ ++ G C  G +  A    + M       N   +  +VD L K+G I  
Sbjct: 240 QGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILE 299

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A  VFE M       D++TYS+++   C   ++  A KL    +  G          +++
Sbjct: 300 ARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILIN 359

Query: 295 GLRHSGCRR--EAKKIQSKI 312
           G  H   RR  EAK + S++
Sbjct: 360 G--HCKSRRLNEAKTLLSEM 377



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 107/233 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +NI++NG CK+R  + A  +   +      P+ VTY+ L++G C+AGR
Sbjct: 342 MVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGR 401

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ + KE+   G  P++ITY+ ++    ++        +L AM+          Y  
Sbjct: 402 PQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNI 461

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G+L+ A +    +   G+Q  +V+Y  +I+   KEG    A  +  +M   G
Sbjct: 462 LIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNG 521

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
              +  T+ + I G  + G+   A   +E M   GF ++   +  ++D    D
Sbjct: 522 CLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLESND 574


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG CK+   D   R+ R + ++   P++ TY++LI GLCK G+L  A 
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++       +  LG+EI   M RKG   D   Y T+I   
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G L+EA   + +M   G++ D  +Y  LI+  CKEG LE+A  +  EM K+G E D 
Sbjct: 376 CKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDN 435

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T LI G C+ G +  A   L  M + G   +   Y  ++    K G +     + + 
Sbjct: 436 VAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKE 495

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M+    V    TY+ +++ LCK  ++ +A+ LL + L  GV
Sbjct: 496 MQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGV 536



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 123/224 (54%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  ++NG C     D  + +++ + + G  P+++TYN LI GLCK G LR A+
Sbjct: 326 LVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAK 385

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+   G  P+  TYT ++  C +    +  LEI   M ++G   D   +  +I+ F
Sbjct: 386 KLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGF 445

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G++ EA   + +M+  G++ D  +Y  +I+ +CK+G ++  + LL EM+  G     
Sbjct: 446 CREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGV 505

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
            T+ +L++GLCK G +K A + L+ M  +G   +   YN +++R
Sbjct: 506 VTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLER 549



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 137/285 (48%), Gaps = 4/285 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           + + L K   T  A   +  +   G+ P++  +N+L+  LCK  ++  A+ +  E+G  G
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG 255

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P  +++ T++    ++     G  +   M       D F Y  +I    K G+L +A 
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
               +M   G+  + V++ TLIN +C  G+ +    +  +M ++G + D  T+  LI+GL
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G+++ A+  +  M + G   +   Y  ++D   K+G ++ A+ + + M  +    D+
Sbjct: 376 CKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDN 435

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             +++++   C+  ++  A + L   L++G++   +    V+ G 
Sbjct: 436 VAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGF 480



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 136/309 (44%), Gaps = 4/309 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F++++N    + Y  +A++ FR ++KH       +   L   L K      A    +E+ 
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G+ P+   +  +M    +  K      +   + ++G       + T+I  + K G L 
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +       M+ + V  D+ +Y+ LIN  CKEG+L+ A  L  EM  +G   +  T T LI
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           +G C  G         + M + G   ++  YN +++ L K G +  A  +   M  +   
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D FTY+ ++   CK   L SA ++    +K G+ +   A  A++ G    G   EA++ 
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 309 QSKIRMAKI 317
             ++  A I
Sbjct: 458 LREMLEAGI 466



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 4/183 (2%)

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
           S ++ +G       +  ++ A+   G   +A      +    +Q+   S   L +   K 
Sbjct: 144 SVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKL 203

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
                A+   +E+   G+  D     +L+  LCK   I  A+L    + K G    + ++
Sbjct: 204 NLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSF 263

Query: 224 NCIVDRLGKDGKIDHAINV----FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           N +++   K G +D    +     E+    D FTYS +++ LCK  +L  A+KL L    
Sbjct: 264 NTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCD 323

Query: 280 SGV 282
            G+
Sbjct: 324 RGL 326


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 167/309 (54%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N++LNG+C+    ++A+   + L  +G  P  V+YNI++KGL  A R   A  +
Sbjct: 234 PDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKL 293

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++E+   G  PN +T+  ++    R    +  +E+L  M + G T +   Y  ++ AF K
Sbjct: 294 MEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCK 353

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ +A +++E MV+ G   DIVSYNTL+   C+ G+++ A  LL +++ +G      +
Sbjct: 354 QKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLIS 413

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---E 244
           +  +IDGL KAG  K A   L+ M   G   ++  Y+ I   L ++ +I+ A+  F   +
Sbjct: 414 YNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQ 473

Query: 245 SMEVKDSFT-YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            M ++ +   Y++++  LCK +   +A  L    + SG    +S    +V+GL + G  +
Sbjct: 474 DMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVK 533

Query: 304 EAKKIQSKI 312
           EA+++ +++
Sbjct: 534 EARELFAQL 542



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 132/265 (49%), Gaps = 18/265 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC A    ++  LC +  T +A R+   L   G  P+++ YN ++ G C AG+L  AR +
Sbjct: 106 PCAA----LIKKLCASGRTADARRV---LAASG--PDVMVYNAMVAGYCGAGQLDAARRL 156

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              + D    P+A TY T+++  C R R     L +L  M R+G   D   Y  ++ A  
Sbjct: 157 ---VADMPVEPDAYTYNTLIRGLCGRGRTSN-ALAVLEDMFRRGCLPDVVTYTILLEATC 212

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K    K+A   +++M   G   DIV+YN ++N  C+EG++E A   L  +   G E +  
Sbjct: 213 KRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTV 272

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++ I++ GL  A   + A   +E M   G   N+  +N ++  L + G ++ A+ V E M
Sbjct: 273 SYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQM 332

Query: 247 E----VKDSFTYSSMVHNLCKAKRL 267
                  +S +Y+ ++H  CK K++
Sbjct: 333 PQYGCTPNSLSYNPLLHAFCKQKKI 357



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 98/199 (49%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP + ++N +L+  CK +    A+     +   G  P++V+YN L+  LC+ G +  A  
Sbjct: 338 TPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIE 397

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L +L D G +P  I+Y T++    +  K K  LE+L  M  KG   D   Y T+ +   
Sbjct: 398 LLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLC 457

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  R++EA     ++   G++     YN ++   CK  +   A  L   M   G   ++ 
Sbjct: 458 REDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNES 517

Query: 187 THTILIDGLCKAGNIKGAR 205
           T+TIL++GL   G +K AR
Sbjct: 518 TYTILVEGLAYEGLVKEAR 536



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 78/174 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L  LC+N   D A+ +   L+  G  P L++YN +I GL KAG+ + A  +
Sbjct: 374 PDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALEL 433

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY+TI     R  + +  +     ++  G       Y  ++    K
Sbjct: 434 LDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCK 493

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
                 A D    M++ G   +  +Y  L+     EG ++ A  L  ++  +G 
Sbjct: 494 RRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGV 547



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 55/257 (21%)

Query: 27  DNALRMFRGLQKHGFVPELVTY----NILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           D+ALR+   L   G  P           LIK LC +GR   AR +L   G     P+ + 
Sbjct: 84  DDALRLVDSLA--GLNPPSPAAVGPCAALIKKLCASGRTADARRVLAASG-----PDVMV 136

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
           Y  ++                             GYC         G+L    D   ++V
Sbjct: 137 YNAMVA----------------------------GYCGA-------GQL----DAARRLV 157

Query: 143 TD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
            D  V+ D  +YNTLI   C  G+   A  +L++M ++G   D  T+TIL++  CK    
Sbjct: 158 ADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGY 217

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSM 257
           K A   L+ M+  G   ++  YN +++ + ++G+++ A+   +++       ++ +Y+ +
Sbjct: 218 KQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIV 277

Query: 258 VHNLCKAKRLPSASKLL 274
           +  L  A+R   A KL+
Sbjct: 278 LKGLFTAERWEDAEKLM 294


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 174/323 (53%), Gaps = 9/323 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   T+N ++ G+C+  Y D A ++   +   G+ P+++TYNIL++GL   G+    
Sbjct: 226 NLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAG 285

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             ++ ++   G   N +TY+ ++    R+ K + G+ +L  MK+KG   DG+ Y  +IAA
Sbjct: 286 YELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAA 345

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR+  A + ++ M++DG   DIV+YNT++   CK+ + + A  + +++ + G   +
Sbjct: 346 LCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPN 405

Query: 185 KYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
             ++  +   L   G+ ++   + LE ++K G D +   YN ++  L +DG +D AI + 
Sbjct: 406 ASSYNSMFSALWSTGHKVRALGMILEMLDK-GVDPDGITYNSLISCLCRDGMVDEAIELL 464

Query: 244 ESMEVKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
             ME++ S       +Y+ ++  LCK  R+  A ++L + +  G R  ++    +++G+ 
Sbjct: 465 VDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIG 524

Query: 298 HSGCRREAKKIQSK-IRMAKISH 319
             GC  +A+ + +  + M  IS 
Sbjct: 525 FGGCLNDARDLATTLVNMDAISE 547



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 150/313 (47%), Gaps = 4/313 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   T+NI++  LC     D+AL     L K    P +VTY ILI+     G +  A 
Sbjct: 157 FSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAM 216

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+ +    P+  TY +I++   R        +I+S++  KGY  D   Y  ++   
Sbjct: 217 KLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGL 276

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +  G+ +   + M  MV  G + ++V+Y+ LI+  C++GK+E    LL +M+K+G + D 
Sbjct: 277 LNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDG 336

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           Y +  LI  LCK G +  A   L+ M   G   ++  YN I+  L K  + D A+++FE 
Sbjct: 337 YCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEK 396

Query: 246 M-EV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           + EV    ++ +Y+SM   L        A  ++L  L  GV        +++  L   G 
Sbjct: 397 LGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGM 456

Query: 302 RREAKKIQSKIRM 314
             EA ++   + M
Sbjct: 457 VDEAIELLVDMEM 469



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 143/302 (47%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N ++ G C+    D+A ++   ++  GF P++VTYNILI  LC  G L +A   
Sbjct: 124 PDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEF 183

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             +L      P  +TYT +++           +++L  M       D F Y ++I    +
Sbjct: 184 KNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCR 243

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A   +  + + G   D+++YN L+     +GK EA Y L+ +M  +G E +  T
Sbjct: 244 EGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVT 303

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +++LI  +C+ G ++     L+ M K G   +   Y+ ++  L K+G++D AI V + M 
Sbjct: 304 YSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMI 363

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D   Y++++  LCK KR   A  +     + G     S+  ++   L  +G + 
Sbjct: 364 SDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKV 423

Query: 304 EA 305
            A
Sbjct: 424 RA 425



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 143/281 (50%), Gaps = 9/281 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+  CT     +++GL  ++  D A+++   L+ HG  P+L+ YN +I G C+A R+ +A
Sbjct: 91  DVVLCTK----LIHGLFTSKTIDKAIQVMHILENHGH-PDLIAYNAIITGFCRANRIDSA 145

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L  + + G +P+ +TY  ++            LE  + + ++        Y  +I A
Sbjct: 146 YQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEA 205

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            +  G + EA   +++M+   +Q D+ +YN++I   C+EG ++ A+ ++  +  +G+  D
Sbjct: 206 TLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPD 265

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ IL+ GL   G  +     +  M   G ++N+  Y+ ++  + +DGK++  + + +
Sbjct: 266 VITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLK 325

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            M+ K    D + Y  ++  LCK  R+  A ++L   +  G
Sbjct: 326 DMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDG 366



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 123/248 (49%), Gaps = 2/248 (0%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T++++++ +C++   +  + + + ++K G  P+   Y+ LI  LCK GR+  A  +L  
Sbjct: 302 VTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDV 361

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+ + Y TI+ C  + ++    L I   +   G + +   Y ++ +A    G 
Sbjct: 362 MISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGH 421

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTH 188
              A   + +M+  GV  D ++YN+LI+  C++G ++ A  LL +ME +  EC     ++
Sbjct: 422 KVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSY 481

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            I++ GLCK   +  A   L  M   G   N   Y  +++ +G  G ++ A ++  ++  
Sbjct: 482 NIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVN 541

Query: 249 KDSFTYSS 256
            D+ +  S
Sbjct: 542 MDAISEHS 549



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 5/230 (2%)

Query: 56  CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
           CKAG    + + L+ L + GH P+ +  T ++   F ++     ++++  ++  G+  D 
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHP-DL 126

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  +I  F +  R+  A   +++M   G   DIV+YN LI   C  G L++A    ++
Sbjct: 127 IAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQ 186

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           + K+  +    T+TILI+     G I  A   L+ M +I    ++  YN I+  + ++G 
Sbjct: 187 LLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGY 246

Query: 236 IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +D A  +  S+  K    D  TY+ ++  L    +  +  +L+   +  G
Sbjct: 247 VDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARG 296



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    +N +L  LCK +  D AL +F  L + G  P   +YN +   L   G 
Sbjct: 362 MISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGH 421

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG--FGY 118
              A  ++ E+ D G  P+ ITY +++ C  R+      +E+L  M+ +          Y
Sbjct: 422 KVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSY 481

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             V+    K+ R+ +A + +  MV  G + +  +Y  LI
Sbjct: 482 NIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLI 520



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 5/152 (3%)

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           CK G    +   L  +  +G + D    T LI GL  +  I  A   +  +   G   +L
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGH-PDL 126

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLS 276
            AYN I+    +  +ID A  V + M+ K    D  TY+ ++ +LC    L SA +    
Sbjct: 127 IAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQ 186

Query: 277 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            LK   +        +++     G   EA K+
Sbjct: 187 LLKENCKPTVVTYTILIEATLLQGGIDEAMKL 218


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 160/302 (52%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG+CK    D A++    +  +G  P ++T+NI+++ +C  GR   A  +
Sbjct: 115 PDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKL 174

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G +P+ +T+  ++    R       ++IL  M   G T +   Y  ++  F K
Sbjct: 175 LSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCK 234

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A +Y++ MV+ G   DIV+YNTL+   CK+GK++ A  +L+++  +G      T
Sbjct: 235 EKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLIT 294

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +IDGL K G  + A   L+ M + G   ++  Y+ +V  L ++GK+D AI  F  +E
Sbjct: 295 YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLE 354

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 ++ TY+S++  LCK+++   A   L   +    +  ++    +++G+ + G  +
Sbjct: 355 GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAK 414

Query: 304 EA 305
           EA
Sbjct: 415 EA 416



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 119/240 (49%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TFNI++N LC+      A+ +   +  HG  P  ++YN L+ G CK  ++  A  
Sbjct: 184 SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIE 243

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L  +   G  P+ +TY T++    ++ K  + +EIL+ +  KG +     Y TVI    
Sbjct: 244 YLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 303

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G+ + A   +++M   G++ DI++Y++L++   +EGK++ A     ++E  G   +  
Sbjct: 304 KVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAI 363

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  ++ GLCK+     A   L YM           Y  +++ +  +G    A+++   +
Sbjct: 364 TYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 423



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 4/219 (1%)

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            +++L  M+ KG   D   Y  +I    K GRL EA  ++  M + G Q +++++N ++ 
Sbjct: 101 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 160

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
             C  G+   A  LL +M ++G      T  ILI+ LC+ G +  A   LE M   G   
Sbjct: 161 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 220

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           N  +YN ++    K+ K+D AI   + M  +    D  TY++++  LCK  ++  A ++L
Sbjct: 221 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 280

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
                 G   +      V+DGL   G    A K+  ++R
Sbjct: 281 NQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMR 319



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 81/174 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +L  LCK+   D A+ +   L   G  P L+TYN +I GL K G+   A  +
Sbjct: 255 PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 314

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ ITY++++    R  K    ++    ++  G   +   Y +++    K
Sbjct: 315 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 374

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
             +   A D++  M++   +    +Y  LI     EG  + A  LL+E+  +G 
Sbjct: 375 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 428


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 147/281 (52%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T +FN ++NGLCK+R  D   R+ + ++++   P++ TY++LI GLCK GRL  A 
Sbjct: 254 LRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAE 313

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN IT+T ++    R+R+    +     M   G   D   Y T++   
Sbjct: 314 QLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGL 373

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G + +A   +++M   G++ D ++Y TLI+ YCKEG LE+A  +   M ++G   D 
Sbjct: 374 CKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDN 433

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T LI G C+ G ++ A   L  M + G   +   Y  ++D   K G +     + + 
Sbjct: 434 VAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKE 493

Query: 246 MEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M++        TY+ +++ LCK  ++ +A+ LL + L  GV
Sbjct: 494 MQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGV 534



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 131/262 (50%), Gaps = 4/262 (1%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           ++GF P++  YNILI   CK G +R A+ I  E+   G  P  +++ T++    ++R   
Sbjct: 216 EYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLD 275

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
            G  +   M+      D F Y  +I    K GRL  A    ++M   G++ + +++  LI
Sbjct: 276 EGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALI 335

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +  C+  ++++A     +M   G + D   +  L++GLCK G++  AR  ++ M  +G  
Sbjct: 336 DGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMK 395

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            +   Y  ++D   K+G ++ A+ + + M     V D+  +++++   C+  R+  A + 
Sbjct: 396 PDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERT 455

Query: 274 LLSCLKSGVRILKSAQKAVVDG 295
           L   +++G++   +    V+DG
Sbjct: 456 LREMVEAGMKPDDATYTMVIDG 477



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 124/265 (46%), Gaps = 36/265 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +N +LNGLCK    + A ++   ++  G  P+ +TY  LI G CK G 
Sbjct: 354 MLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGD 413

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A                                   +EI   M  +G   D   +  
Sbjct: 414 LESA-----------------------------------MEIRKGMNEEGVVLDNVAFTA 438

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ F + GR+++A   + +MV  G++ D  +Y  +I+ YCK+G ++  + LL EM+  G
Sbjct: 439 LISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQING 498

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ +L++GLCK G +K A + LE M  +G   +   YN +++   K+GK +  +
Sbjct: 499 HKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLL 558

Query: 241 NV-FESMEVKDSFTYSSMVHNLCKA 264
            +  E   + D   Y+S+V    K+
Sbjct: 559 KLRNEKGLIVDYAYYTSLVSEYNKS 583



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 98/184 (53%), Gaps = 6/184 (3%)

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
           +  +++  G    +  YN LIN +CKEG +  A L+ +E+ K+G      +   LI+GLC
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 197 KAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           K+ N+ +G RL  + M +     ++  Y+ ++  L K+G++D A  +F+ M+ +    + 
Sbjct: 270 KSRNLDEGFRLK-KTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNG 328

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
            T+++++   C+++R+ SA       L  GV+        +++GL   G   +A+K+  +
Sbjct: 329 ITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDE 388

Query: 312 IRMA 315
           +RM 
Sbjct: 389 MRMV 392



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           +    E+ + GF      + ILI+  CK G+I+ A+L    + K G      ++N +++ 
Sbjct: 208 WTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
           L K   +D    + ++ME      D FTYS ++H LCK  RL  A +L     + G+R  
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPN 327

Query: 286 KSAQKAVVDG 295
                A++DG
Sbjct: 328 GITFTALIDG 337


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 145/273 (53%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  ++NGLCK      A+ +F  +   G  P++ TYN +I GLCK G    A 
Sbjct: 159 LQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAA 218

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK++ ++G  PN +TY+T++    R+R     L+I S MK KG + D F Y ++I   
Sbjct: 219 GLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGL 278

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R KEA+  + +M +  +  DIV++N L++ +CKEGK+  A  +L  M + G E + 
Sbjct: 279 CKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNV 338

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ L+ G     ++  AR     M   G   N+ +YN +++   K  +ID A+ +F  
Sbjct: 339 VTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNE 398

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M       ++ +Y++++H  C+  +L  A  L 
Sbjct: 399 MIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLF 431



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 143/299 (47%), Gaps = 39/299 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+  ++ GLCK      A  +   +     +P++VT+N+L+   CK G++  A 
Sbjct: 264 ISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEAL 323

Query: 66  WILKELGDSGHAPNAITYTTIM---------------------KCCFRN----------- 93
            +LK + + G  PN +TY+++M                     K C  N           
Sbjct: 324 GVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGY 383

Query: 94  ---RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
              ++    +++ + M  +G T +   Y T+I  F ++G+L+EA D    M T+G   D+
Sbjct: 384 CKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDL 443

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y+ L++ +CK+G L  A+ L   M+    + +   +TIL+  +CK+GN K AR     
Sbjct: 444 FTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSE 503

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAK 265
           +   G   +++ Y  I++ L K+G +D A+  F +ME      D  +Y+ ++  L + K
Sbjct: 504 LFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHK 562



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 39/344 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCK-----------------------------------NRY 25
           M+     P   T+N ++NGLCK                                   +R 
Sbjct: 189 MVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRL 248

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
            + AL +F  ++  G  P++ TY  LI+GLCK  R + A  +L E+      P+ +T+  
Sbjct: 249 VNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNV 308

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    +  K    L +L  M   G   +   Y +++  +     + EA      M+T G
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG 368

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            + +I SYN LIN YCK  +++ A  L +EM  QG   +  ++  LI G C+ G ++ A+
Sbjct: 369 CKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQ 428

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
                M   G   +L  Y+ ++D   K G +  A  +F +M+      +   Y+ +VH +
Sbjct: 429 DLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAM 488

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           CK+     A KL       G++        +++GL   G   EA
Sbjct: 489 CKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEA 532



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 152/341 (44%), Gaps = 40/341 (11%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           PC   F  +L+ + K  +Y D  + + + ++  G  P + T +I +   C+  R+     
Sbjct: 90  PCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFS 149

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++   G  P  +T+TT++    +  ++   +E+   M  KG   D + Y T+I    
Sbjct: 150 VLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLC 209

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KIG    A   +++M   G Q ++V+Y+TLI+  C++  +  A  +   M+ +G   D +
Sbjct: 210 KIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIF 269

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LI GLCK    K A   L  M  +    ++  +N +VD   K+GK+  A+ V ++M
Sbjct: 270 TYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTM 329

Query: 247 -----------------------EVKDS----------------FTYSSMVHNLCKAKRL 267
                                  +V ++                F+Y+ +++  CKAKR+
Sbjct: 330 TEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRI 389

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             A +L    +  G+     +   ++ G    G  REA+ +
Sbjct: 390 DEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDL 430



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 107/222 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   ++NI++NG CK +  D A+++F  +   G  P  V+YN LI G C+ G+
Sbjct: 364 MITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGK 423

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR A+ + + +  +G+ P+  TY+ ++    +         +  AM+      +   Y  
Sbjct: 424 LREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTI 483

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K G  K+A     ++   G+Q  +  Y T+IN  CKEG L+ A      ME  G
Sbjct: 484 LVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADG 543

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
              D+ ++ ++I GL +  +   A L +  M   GF +++  
Sbjct: 544 CPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVRP 585



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 123/265 (46%), Gaps = 5/265 (1%)

Query: 24  RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL-KELGDSGHAPNAIT 82
           R  D+AL  F  +     +P ++ +  L+  + K G+       L K++   G +PN  T
Sbjct: 71  RNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYT 130

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
            +  M C  + ++  LG  +L+ + + G       + T+I    K+G   +A +  + MV
Sbjct: 131 LSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMV 190

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
             G Q D+ +YNT+IN  CK G+  AA  LL +ME+ G + +  T++ LID LC+   + 
Sbjct: 191 AKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVN 250

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 258
            A     YM   G   ++  Y  ++  L K  +   A  +   M     + D  T++ +V
Sbjct: 251 EALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLV 310

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVR 283
              CK  ++  A  +L +  + GV 
Sbjct: 311 DTFCKEGKVSEALGVLKTMTEMGVE 335



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 5/174 (2%)

Query: 150 IVSYNTLINLYCKEGKL-EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           I+ +  L++   K G+  +    L  +ME  G   + YT +I ++  C+   +      L
Sbjct: 92  IIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVL 151

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             + K+G    +  +  +++ L K G+   A+ +F+ M  K    D +TY+++++ LCK 
Sbjct: 152 AKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKI 211

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
               +A+ LL    ++G +        ++D L       EA  I S ++   IS
Sbjct: 212 GETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGIS 265


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 158/328 (48%), Gaps = 39/328 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++NGLCK  +  +A+ +   + + G+ P++ TYN +I GLCK G ++ A  +
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352

Query: 68  LKELGDSGHAPNAITYTTIMK---------------------------CCFRN------- 93
           L ++     +PN +TY T++                            C F +       
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 94  -RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
            R +++ +E+   M+ KG   D F Y  +I +    G+L EA + ++QM   G    +++
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT 472

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YNTLI+ +CK  K   A  + DEME  G   +  T+  LIDGLCK+  ++ A   ++ M 
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLP 268
             G   +   YN ++    + G I  A ++ ++M       D  TY +++  LCKA R+ 
Sbjct: 533 MEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE 592

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ASKLL S    G+ +   A   V+ GL
Sbjct: 593 VASKLLRSIQMKGINLTPHAYNPVIQGL 620



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 161/349 (46%), Gaps = 40/349 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY----------------- 48
           + P  +TFN+++  LC+      A+ M   +  +G VP+  T+                 
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGAL 244

Query: 49  ------------------NILIKGLCKAGRLRTARWILKELGDS-GHAPNAITYTTIMKC 89
                             N+++ G CK GR+  A   ++E+ +  G  P+  T+ T++  
Sbjct: 245 RIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             +    K  +EI+  M ++GY  D + Y +VI+   K+G +KEA + ++QM+T     +
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN 364

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
            V+YNTLI+  CKE ++E A  L   +  +G   D  T   LI GLC   N + A    E
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAK 265
            M   G + +   YN ++D L   GK+D A+N+ + ME+    +   TY++++   CKA 
Sbjct: 425 EMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           +   A ++       GV         ++DGL  S    +A ++  ++ M
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 533



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 148/276 (53%), Gaps = 5/276 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            + N++++G CK    ++AL   + +  + GF P+  T+N L+ GLCKAG ++ A  I+ 
Sbjct: 260 VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMD 319

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G+ P+  TY +++    +  + K  +E+L  M  +  + +   Y T+I+   K  
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 379

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +++EAT+    + + G+  D+ ++N+LI   C       A  L +EM  +G E D++T+ 
Sbjct: 380 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYN 439

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           +LID LC  G +  A   L+ M   G   ++  YN ++D   K  K   A  +F+ MEV 
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH 499

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
              ++S TY++++  LCK++R+  A++L+   +  G
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 142/283 (50%), Gaps = 4/283 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D +P T T+N +++ LCK    + A  + R L   G +P++ T+N LI+GLC    
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R A  + +E+   G  P+  TY  ++       K    L +L  M+  G       Y T
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K  + +EA +  ++M   GV  + V+YNTLI+  CK  ++E A  L+D+M  +G
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + DKYT+  L+   C+ G+IK A   ++ M   G + ++  Y  ++  L K G+++ A 
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
            +  S+++K        Y+ ++  L + ++   A  L    L+
Sbjct: 596 KLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLE 638



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++G CK   T  A  +F  ++ HG     VTYN LI GLCK+ R+  A  ++ ++
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  TY +++    R    K   +I+ AM   G   D   Y T+I+   K GR+
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLIN-LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + A+  +  +   G+ L   +YN +I  L+ K    EA  L  + +E+     D  ++ I
Sbjct: 592 EVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRI 651

Query: 191 LIDGLCKAG 199
           +  GLC  G
Sbjct: 652 VFRGLCNGG 660



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 150/331 (45%), Gaps = 33/331 (9%)

Query: 5   DLTPCTATFNI--------------MLNGLCKNRYTDNALRMFR-GLQKHGFVPELVTYN 49
           +LTP ++T +               +L+ L        ALR+F    +K  F PE   Y 
Sbjct: 28  NLTPPSSTISFASPHSAALSSTDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYE 87

Query: 50  ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
            ++  L ++G     + IL+++  S       T+  +++      +++L  EILS +   
Sbjct: 88  EILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESY---AQFELQDEILSVVD-- 142

Query: 110 GYTFDGFG-------YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
            +  D FG       Y  ++   V    LK       +M   G++ D+ ++N LI   C+
Sbjct: 143 -WMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCR 201

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
             +L  A L+L++M   G   D+ T T ++ G  + G++ GA    E M + G   +  +
Sbjct: 202 AHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVS 261

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSC 277
            N IV    K+G+++ A+N  + M  +D F     T++++V+ LCKA  +  A +++   
Sbjct: 262 VNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVM 321

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           L+ G         +V+ GL   G  +EA ++
Sbjct: 322 LQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352



 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK    + A ++ R +Q  G       YN +I+GL +  +   A  +
Sbjct: 573 PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINL 632

Query: 68  LKELGDSGHA-PNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGY 111
            +E+ +   A P+A++Y  + +  C      +  ++ L  +  KG+
Sbjct: 633 FREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGF 678


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 166/313 (53%), Gaps = 11/313 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   T+N +L+G CK    D AL++F G  K GFVP++VTYN LI G CKA +
Sbjct: 36  MIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK 95

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ IL+ +      P+ +TY +++    +N +     E    +  KG++ +   Y T
Sbjct: 96  LDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVD---EARMLIVDKGFSPNVITYST 152

Query: 121 VIAAFVKIGR-LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I+   +  R + EA      ++  G + ++ +YN LI+   KE ++  A+ L   + K 
Sbjct: 153 LISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKH 212

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E D  T+T+ IDGLCKAG ++ A L L+ M++ G   ++ ++N +++ L K+ ++D A
Sbjct: 213 GLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA 272

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   ME K    ++ ++++++   C+A +   A       LK GV+        +VDG
Sbjct: 273 EVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDG 332

Query: 296 L---RHSGCRREA 305
           L   R  G  +EA
Sbjct: 333 LCKARQEGRIKEA 345



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 143/258 (55%), Gaps = 7/258 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+++GL K    + A  +F GL KHG  P+ +TY + I GLCKAGR+  A  +
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 240

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++ + G  P+ +++  ++    + ++      +LS M+ KG + +   + T+I    +
Sbjct: 241 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 300

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK---EGKLEAAYLLLDEMEKQGFECD 184
            G+ K+A    ++M+  GV+  +V+YN L++  CK   EG+++ A  L D M ++G   D
Sbjct: 301 AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPD 360

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T++ LIDGL KAG +  AR  L  M   G   N+  YN ++  L    K+D A+ +F 
Sbjct: 361 VVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFV 420

Query: 245 SME----VKDSFTYSSMV 258
           +M     V D+ TY +++
Sbjct: 421 AMVEKGCVPDTITYGTII 438



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 149/284 (52%), Gaps = 8/284 (2%)

Query: 6   LTPCTATFNIMLNGLCKN-RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
            +P   T++ +++GLC+  R    AL++F  + K G+ PE+ TYNILI GL K  R+  A
Sbjct: 143 FSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEA 202

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +   L   G  P+AITYT  +    +  + +  L +L  M  KG   D   +  VI  
Sbjct: 203 FELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVING 262

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K  R+ EA   +  M   G   + +S+NTLI   C+ GK + A     EM K+G +  
Sbjct: 263 LCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPT 322

Query: 185 KYTHTILIDGLCKA---GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             T+ IL+DGLCKA   G IK A    + M + G   ++  Y+ ++D LGK GK+D A  
Sbjct: 323 VVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARR 382

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +  +ME K    + +TY+S++  LC  +++  A +L ++ ++ G
Sbjct: 383 LLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKG 426



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 148/269 (55%), Gaps = 14/269 (5%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++KHGF P  +TYN L+ GLC  GR+  A+ + + +  +G++P+ +TY T++    +  +
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
               L+I     ++G+  D   Y  +I  F K  +L EA   +++MV++ +  D+V+YN+
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI- 214
           L+N  CK G+++ A +L+ +   +GF  +  T++ LI GLC+   ++G    L+    + 
Sbjct: 121 LVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCR--ELRGVSEALKLFGSVL 175

Query: 215 --GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRL 267
             G++  +  YN ++D L K+ +++ A  +F  + VK     D+ TY+  +  LCKA R+
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL-VKHGLEPDAITYTVFIDGLCKAGRV 234

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             A  +L    + G      +  AV++GL
Sbjct: 235 EDALLMLKDMDEKGCVPDVVSHNAVINGL 263



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA---GRLRT 63
           +P   +FN ++ G C+      A+  F+ + K G  P +VTYNIL+ GLCKA   GR++ 
Sbjct: 285 SPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 344

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +   + + G  P+ +TY+ ++    +  K      +L AM+ KG   + + Y ++I+
Sbjct: 345 AITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS 404

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
               + ++ EA +    MV  G   D ++Y T+I+
Sbjct: 405 GLCGLEKVDEALELFVAMVEKGCVPDTITYGTIIS 439



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 8   PCTATFNIMLNGLCKNRY---TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           P   T+NI+++GLCK R       A+ +F  + + G VP++VTY+ LI GL KAG+L  A
Sbjct: 321 PTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDA 380

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +L  +   G  PN  TY +++       K    LE+  AM  KG   D   Y T+I+A
Sbjct: 381 RRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 156/294 (53%), Gaps = 4/294 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T++++++GLCK      A+ +   ++  G  P+++TY IL+ GLCK  ++  A  
Sbjct: 188 SPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWE 247

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+ D+G  PN +TY +++    R R+    L ++  M  +G T +   Y T+I    
Sbjct: 248 VLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLC 307

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+GR+K+A   +  M+  G   D++ YN LIN  CK  +++ +  LL      G + D  
Sbjct: 308 KVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVV 367

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ +I GLC++  +  A   L Y+   G   ++  Y+ ++D L K GK+D A +++E M
Sbjct: 368 TYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVM 427

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                  D  TYS+++  LCKA R+  A  LL   ++ G         +++ GL
Sbjct: 428 AGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 481



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 9/308 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N +L+GLC+ R   +AL + R +   G  P +VTY  LI GLCK GR++ A  
Sbjct: 258 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 317

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++ D G  P+ + Y  ++    +  +    + +L      G   D   Y +VI    
Sbjct: 318 MLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLC 377

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  RL EA   +  + + G   D++ Y+TLI+  CK GK++ A+ L + M   G + D  
Sbjct: 378 RSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVV 437

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LIDGLCKAG +  A L L  M ++G   +   YN ++  L     +D AI + E M
Sbjct: 438 TYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEM 497

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLL----LSCLKSGVRILKS-AQKAVVDGLR 297
           E       + TY+ ++H +C+ +R+ SA  LL      C+ +G   L + A  +++DGL 
Sbjct: 498 ERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLC 557

Query: 298 HSGCRREA 305
            +G   EA
Sbjct: 558 KAGRVAEA 565



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 9/308 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C   TP   T+  +++GLCK     +A  M   +   G  P+L+ YN+LI GLCKA +
Sbjct: 287 MTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQ 346

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +  +L+     G  P+ +TY++++    R+ +      +L  +K +G   D   Y T
Sbjct: 347 VDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYST 406

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++ EA D  E M  DG   D+V+Y+TLI+  CK G+++ A+LLL  M + G
Sbjct: 407 LIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 466

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+  LI GLC   ++  A   +E M +     +   YN ++  + +  ++D A+
Sbjct: 467 TPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAV 526

Query: 241 NVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
            + E  + +         D+  YSS++  LCKA R+  A       + +GV         
Sbjct: 527 VLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSI 586

Query: 292 VVDGLRHS 299
           +++GL+ S
Sbjct: 587 LLEGLKKS 594



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 159/309 (51%), Gaps = 11/309 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++GLCKN   D A  +F  ++     P +VTYN L+ GL + G+L  A  +
Sbjct: 112 PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 171

Query: 68  LKELGDS-GH------APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +E+ D   H      +PN ITY+ ++    +  +    +E+L +MK +G + D   Y  
Sbjct: 172 FQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTI 231

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K  ++  A + + +M+  G   ++V+YN+L++  C+  ++  A  L+ +M  +G
Sbjct: 232 LVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG 291

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  LIDGLCK G +K A   L  M   G   +L  YN +++ L K  ++D +I
Sbjct: 292 CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESI 351

Query: 241 NVFE---SMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +     S  +K D  TYSS+++ LC++ RL  A +LLL     G          ++DGL
Sbjct: 352 ALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGL 411

Query: 297 RHSGCRREA 305
             +G   EA
Sbjct: 412 CKAGKVDEA 420



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 141/288 (48%), Gaps = 11/288 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P     +I+++GLCK + + +ALR FR +Q  G V + V Y  L+ GL K  RL  A
Sbjct: 39  NLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQA 98

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             IL E+ D G  PN +TY +++    +N +     E+   MK    +     Y T++  
Sbjct: 99  LAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDG 158

Query: 125 FVKIGRLKEATDYMEQMV-------TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
             + G+L+ A    ++M+        D    ++++Y+ LI+  CK  ++  A  LL+ M+
Sbjct: 159 LFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMK 218

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            +G   D  T+TIL+DGLCK   +  A   L  M   G   NL  YN ++  L +  ++ 
Sbjct: 219 ARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVS 278

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            A+ +   M  +    +  TY +++  LCK  R+  A  +L   +  G
Sbjct: 279 DALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKG 326



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 147/310 (47%), Gaps = 11/310 (3%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +  +L+GL K +  D AL +   ++ HG  P +VTYN LI GLCK      A+ + +
Sbjct: 79  TVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFE 138

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDG------FGYCTVI 122
            +     +P+ +TY T++   FR  K +  + +   M  R+ +  D         Y  +I
Sbjct: 139 HMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLI 198

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K  R+ +A + +E M   G   D+++Y  L++  CKE K+ AA+ +L EM   G  
Sbjct: 199 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV 258

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+  L+ GLC+A  +  A   +  M   G   N+  Y  ++D L K G++  A  +
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
              M  K    D   Y+ +++ LCKA ++  +  LL   +  G++       +V+ GL  
Sbjct: 319 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 378

Query: 299 SGCRREAKKI 308
           S    EA ++
Sbjct: 379 SNRLDEACRL 388



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 11/278 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +L G C+    D A R F  ++    VP +   +ILI GLCKA R   A   
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +  SG   + + YT ++   ++ ++    L IL  M+  G   +   Y ++I    K
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDK- 185
                 A +  E M +      +V+YNTL++   + GKLE A  L  EM +++  + D  
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186

Query: 186 -----YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+++LIDGLCKA  +  A   LE M   G   ++  Y  +VD L K+ K+  A 
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 246

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            V   M     V +  TY+S++H LC+A+R+  A  L+
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALM 284



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 6/216 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    ++ +++GLCK    D A  ++  +   G   ++VTY+ LI GLCKAGR+  A  
Sbjct: 398 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHL 457

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +   G  P+ +TY +++K           +E++  M+R         Y  +I    
Sbjct: 458 LLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMC 517

Query: 127 KIGRLKEATDYMEQ-----MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           ++ R+  A   +EQ     +   G  LD ++Y++LI+  CK G++  A     EM   G 
Sbjct: 518 RMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGV 577

Query: 182 ECDKYTHTILIDGLCKAGNIKGAR-LHLEYMNKIGF 216
             D  T++IL++GL K+ ++   R L L+ M ++G+
Sbjct: 578 IPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGY 613



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q D+ +Y  L+  +C+ G+++ A    DEM  +    + +  +ILIDGLCKA     A  
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
               M   G  ++   Y  ++  L K+ ++D A+ +   M       +  TY+S++  LC
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 263 KAKRLPSASKLLLSCLKS 280
           K    P  ++ L   +KS
Sbjct: 126 KNNE-PDRAQELFEHMKS 142


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P TATF  ++ GLC       AL +F  +   GF P  VTY  LI GLCK G  R A  +
Sbjct: 142 PDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRL 201

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN ITY TI+ C F++R+    L I S M  KG + +   Y ++I    K
Sbjct: 202 LRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCK 261

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
               K     M +MV   +  ++V + TL++  CKEG +  A+ ++D M ++G E D  T
Sbjct: 262 FSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVT 321

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +T L+DG C    +  A    + M + G   N+ +Y+ +++   K  +ID A+ +FE M 
Sbjct: 322 YTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMC 381

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               V +  TY++++H LC   RL  A  L    + SG
Sbjct: 382 QRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASG 419



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 147/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+N +++ L K+R  + AL +F  +   G  P + TYN +I GLCK   
Sbjct: 205 MVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSE 264

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +    ++ E+ DS   PN + +TT++    +     +  +++  M ++G   D   Y  
Sbjct: 265 WKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTA 324

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++        + EA    + MV  G   +++SY+TLIN YCK  +++ A  L +EM ++ 
Sbjct: 325 LMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRE 384

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  LI GLC  G ++ A      M   G   +L  Y  ++D L K   +D A+
Sbjct: 385 LVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAM 444

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + +++E      D  +Y+ ++  +C+   L +A  L  S    G+         +++GL
Sbjct: 445 AMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGL 504

Query: 297 RHSGCRREAKKI 308
              G   EA K+
Sbjct: 505 CLQGLLAEATKL 516



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 1/233 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++ ++NG CK +  D A+ +F  + +   VP +VTYN LI GLC  GRLR A  +
Sbjct: 352 PNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIAL 411

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+  SG  P+ +TY  ++    + R     + +L A++      D   Y  VI    +
Sbjct: 412 FHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCR 471

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G L+ A D    + + G+  D+ +Y  +IN  C +G L  A  L  EM   G   D  T
Sbjct: 472 VGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCT 531

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           + ++  G  +      A   L+ M   GF ++      IV+ L  DG +D ++
Sbjct: 532 YNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDG-LDQSV 583



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 150/316 (47%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  +++GLCK   +  A+R+ R + +    P ++TYN +I  L K  +
Sbjct: 170 MVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQ 229

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I  E+   G +PN  TY +I+    +  ++K    +++ M       +   + T
Sbjct: 230 VNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTT 289

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K G +  A D ++ M+  GV+ D+V+Y  L++ +C   +++ A  + D M ++G
Sbjct: 290 LVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  +++ LI+G CK   I  A    E M +     N+  YN ++  L   G++  AI
Sbjct: 350 CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAI 409

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M    ++ D  TY  ++  LCK + L  A  +L +   S +     +   V+DG+
Sbjct: 410 ALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGM 469

Query: 297 RHSGCRREAKKIQSKI 312
              G    A  + S +
Sbjct: 470 CRVGELEAAGDLFSSL 485



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 114/246 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  +++G C     D A ++F  + + G  P +++Y+ LI G CK  R
Sbjct: 310 MIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQR 369

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A ++ +E+      PN +TY T++       + +  + +   M   G   D   Y  
Sbjct: 370 IDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRI 429

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K   L +A   ++ +    +  DI SYN +I+  C+ G+LEAA  L   +  +G
Sbjct: 430 LLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKG 489

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T+TI+I+GLC  G +  A      MN  G   +   YN I     ++ +   AI
Sbjct: 490 LHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAI 549

Query: 241 NVFESM 246
            + + M
Sbjct: 550 QLLQEM 555



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L  +   ++    L + + +   G   ++ T  I+I   C   R+     +
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+  T+TT+++      K    L +   M  +G+  +G  Y T+I    K
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G  + A   +  MV    + ++++YNT+I+   K+ ++  A  +  EM  +G   +  T
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I GLCK    K     +  M       N+  +  +VD L K+G +  A +V + M 
Sbjct: 252 YNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMI 311

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +    D  TY++++   C    +  A K+  + ++ G
Sbjct: 312 QRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 116/274 (42%), Gaps = 6/274 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D AL  F  +      P +V +  ++  +       T   + K++   G   +  T   +
Sbjct: 56  DEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIV 115

Query: 87  MKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +   C  NR    G  +L+ + + G+  D   + T+I      G++ EA    ++MV +G
Sbjct: 116 INSFCHLNR-VDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            Q + V+Y TLI+  CK G   AA  LL  M ++  E +  T+  +ID L K   +  A 
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEAL 234

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                M   G   N+  YN I+  L K  +  H   +   M     + +   ++++V  L
Sbjct: 235 NIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDAL 294

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           CK   +  A  ++   ++ GV        A++DG
Sbjct: 295 CKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDG 328



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 6/149 (4%)

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +M+  G   D YT  I+I+  C    +      L  + K+G   +   +  ++  L  +G
Sbjct: 99  QMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEG 158

Query: 235 KIDHAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           KI  A+++F+ M V + F     TY +++H LCK     +A +LL S ++          
Sbjct: 159 KIGEALHLFDKM-VGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITY 217

Query: 290 KAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
             ++D L       EA  I S++    IS
Sbjct: 218 NTIIDCLFKDRQVNEALNIFSEMIAKGIS 246


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 173/325 (53%), Gaps = 7/325 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+N ++ G+CK    D A  + R L   G  P+++TYNIL++ L   G+
Sbjct: 234 MLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGK 293

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ E+   G  PN +T++ ++    R+ K +  + +L +MK KG   D + Y  
Sbjct: 294 WSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDP 353

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IA F + GRL  AT+++E M++DG   DIV+YNT++   C+ GK + A  + +++++ G
Sbjct: 354 LIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVG 413

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  ++  L   L  +G+  +   + L+ +N+ G D +   YN ++  L +DG +D A
Sbjct: 414 CPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQ-GIDPDEITYNSLISCLCRDGMVDEA 472

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           I +   M+      +  +Y+ ++  LCK  R   A ++L +  + G +  ++    +++G
Sbjct: 473 IELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEG 532

Query: 296 LRHSGCRREAKKIQSKIR-MAKISH 319
           +  SG R EA ++ + +  M  IS 
Sbjct: 533 IGFSGLRAEAMELANSLHGMNAISE 557



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 145/302 (48%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NIM+   C     D AL +F  L K    P ++TY ILI+     G +  A  +
Sbjct: 171 PDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKL 230

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ +TY  I++   +        E+L ++  +G   D   Y  ++   + 
Sbjct: 231 LDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLS 290

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  E    + +M++ G + ++V+++ LI   C++GK+E A  LL  M+++G + D Y 
Sbjct: 291 RGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYC 350

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G C+ G +  A   LEYM   G   ++  YN I+  L + GK D A+ VFE ++
Sbjct: 351 YDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLD 410

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 +  +Y+++   L  +     A +++L  L  G+   +    +++  L   G   
Sbjct: 411 EVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVD 470

Query: 304 EA 305
           EA
Sbjct: 471 EA 472



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 119/249 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T +I++  LC++   + A+ + R +++ G  P+   Y+ LI G C+ GRL  A   
Sbjct: 311 PNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEF 370

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +   G  P+ + Y TIM    R  K    LE+   +   G   +   Y T+ +A   
Sbjct: 371 LEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWS 430

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A + + +++  G+  D ++YN+LI+  C++G ++ A  LL +M+   +  +  +
Sbjct: 431 SGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVS 490

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + I++ GLCK      A   L  M + G   N   Y  +++ +G  G    A+ +  S+ 
Sbjct: 491 YNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLH 550

Query: 248 VKDSFTYSS 256
             ++ +  S
Sbjct: 551 GMNAISEDS 559



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 141/335 (42%), Gaps = 38/335 (11%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELV----------------------------- 46
           +LN  C+    + +L     +   G+ P+++                             
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 47  -----TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
                 YN LI G  KA +L  A  +L  +   G  P+ +TY  ++       K  L LE
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           I   + +         Y  +I A +  G +  A   +++M++ G++ D ++YN +I   C
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMC 254

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           KE  ++ A+ LL  +  +G + D  T+ IL+  L   G        +  M  IG   N+ 
Sbjct: 255 KEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVV 314

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            ++ ++  L +DGK++ A+N+  SM+ K    D++ Y  ++   C+  RL  A++ L   
Sbjct: 315 THSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYM 374

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  G          ++ GL  +G   +A ++  K+
Sbjct: 375 ISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKL 409


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 156/294 (53%), Gaps = 4/294 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T++++++GLCK      A+ +   ++  G  P+++TY IL+ GLCK  ++  A  
Sbjct: 110 SPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWE 169

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+ D+G  PN +TY +++    R R+    L ++  M  +G T +   Y T+I    
Sbjct: 170 VLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLC 229

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+GR+K+A   +  M+  G   D++ YN LIN  CK  +++ +  LL      G + D  
Sbjct: 230 KVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVV 289

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ +I GLC++  +  A   L Y+   G   ++  Y+ ++D L K GK+D A +++E M
Sbjct: 290 TYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVM 349

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                  D  TYS+++  LCKA R+  A  LL   ++ G         +++ GL
Sbjct: 350 TGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 403



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 4/269 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N +L+GLC+ R   +AL + R +   G  P +VTY  LI GLCK GR++ A  
Sbjct: 180 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 239

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++ D G  P+ + Y  ++    +  +    + +L      G   D   Y +VI    
Sbjct: 240 MLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLC 299

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  RL EA   +  + + G   D++ Y+TLI+  CK GK++ A+ L + M   G + D  
Sbjct: 300 RSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVV 359

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LIDGLCKAG +  A L L  M ++G   +   YN ++  L     +D AI + E M
Sbjct: 360 TYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEM 419

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSAS 271
           E       + TY+ ++H +C+ +R+ SA+
Sbjct: 420 ERSNCAPSAVTYNILIHGMCRMERVDSAA 448



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 161/336 (47%), Gaps = 39/336 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYN------------------ 49
           P   T+N +++GLCKN   D A  +F  ++     P +VTYN                  
Sbjct: 8   PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 67

Query: 50  ----------------ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93
                           IL+ GLC+AG++ TA    +++ D   +PN ITY+ ++    + 
Sbjct: 68  FQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRC-SPNVITYSVLIDGLCKA 126

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
            +    +E+L +MK +G + D   Y  ++    K  ++  A + + +M+  G   ++V+Y
Sbjct: 127 NRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTY 186

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           N+L++  C+  ++  A  L+ +M  +G   +  T+  LIDGLCK G +K A   L  M  
Sbjct: 187 NSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMID 246

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SMEVK-DSFTYSSMVHNLCKAKRLPS 269
            G   +L  YN +++ L K  ++D +I +     S  +K D  TYSS+++ LC++ RL  
Sbjct: 247 KGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDE 306

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           A +LLL     G          ++DGL  +G   EA
Sbjct: 307 ACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEA 342



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 142/280 (50%), Gaps = 5/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C   TP   T+  +++GLCK     +A  M   +   G  P+L+ YN+LI GLCKA +
Sbjct: 209 MTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQ 268

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +  +L+     G  P+ +TY++++    R+ +      +L  +K +G   D   Y T
Sbjct: 269 VDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYST 328

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++ EA D  E M  DG   D+V+Y+TLI+  CK G+++ A+LLL  M + G
Sbjct: 329 LIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 388

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
                 T+  LI GLC   ++  A   +E M +     +   YN ++  + +  ++D A 
Sbjct: 389 TPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAA 448

Query: 240 INVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLL 275
           ++ F+ M     + D  TYS ++  L K+K L     L+L
Sbjct: 449 LDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVL 488



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 6/250 (2%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++ HG  P +VTYN LI GLCK      A+ + + +     +P+ +TY T++   FR  K
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            +  + +   M  +  + D   +  ++    + G+++ A ++  +M  D    ++++Y+ 
Sbjct: 61  LERAMALFQEMLDR-RSHDVISFNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSV 118

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+  CK  ++  A  LL+ M+ +G   D  T+TIL+DGLCK   +  A   L  M   G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              NL  YN ++  L +  ++  A+ +   M  +    +  TY +++  LCK  R+  A 
Sbjct: 179 CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAC 238

Query: 272 KLLLSCLKSG 281
            +L   +  G
Sbjct: 239 AMLADMIDKG 248


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 158/328 (48%), Gaps = 39/328 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++NGLCK  +  +A+ +   + + G+ P++ TYN +I GLCK G ++ A   
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEF 352

Query: 68  LKELGDSGHAPNAITYTTIMK---------------------------CCFRN------- 93
           L ++     +PN +TY T++                            C F +       
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 94  -RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
            R +++ +E+   M+ KG   D F Y  +I +    G+L EA + ++QM   G    +++
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT 472

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YNTLI+ +CK  K+  A  + DEME  G   +  T+  LIDGLCK+  ++ A   ++ M 
Sbjct: 473 YNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMI 532

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLP 268
             G   +   YN ++    + G I  A ++ ++M       D  TY +++  LCKA R+ 
Sbjct: 533 MEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE 592

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ASKLL S    G+ +   A   V+ GL
Sbjct: 593 VASKLLRSIQMKGIALTPHAYNPVIQGL 620



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 161/351 (45%), Gaps = 75/351 (21%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY----------------- 48
           + P  +TFN+++  LC+      A+ M   +  +G VP+  T+                 
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGAL 244

Query: 49  ------------------NILIKGLCKAGRLRTARWILKELGDS-GHAPNAITYTTIMKC 89
                             N+++ G CK GR+  A   ++E+ +  G  P+  T+ T++  
Sbjct: 245 RIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             +    K  +EI+  M ++GY  D + Y +VI+   K+G +KEA ++++QM+T     +
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPN 364

Query: 150 IVSYNTLINLYCKEGKLE-----------------------------------AAYLLLD 174
            V+YNTLI+  CKE ++E                                    A  L +
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           EM  +G E D++T+ +LID LC  G +  A   L+ M   G   ++  YN ++D   K  
Sbjct: 425 EMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484

Query: 235 KIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           KI  A  +F+ MEV    ++S TY++++  LCK++R+  AS+L+   +  G
Sbjct: 485 KIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEG 535



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 143/283 (50%), Gaps = 4/283 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D +P T T+N +++ LCK    + A  + R L   G +P++ T+N LI+GLC    
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R A  + +E+   G  P+  TY  ++       K    L +L  M+  G       Y T
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K  +++EA +  ++M   GV  + V+YNTLI+  CK  ++E A  L+D+M  +G
Sbjct: 476 LIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEG 535

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + DK+T+  L+   C+ G+IK A   ++ M   G + ++  Y  ++  L K G+++ A 
Sbjct: 536 QKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
            +  S+++K        Y+ ++  L + ++   A  L    L+
Sbjct: 596 KLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLE 638



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 1/189 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++G CK      A  +F  ++ HG     VTYN LI GLCK+ R+  A  ++ ++
Sbjct: 472 TYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQM 531

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  TY +++    R    K   +I+ AM   G   D   Y T+I+   K GR+
Sbjct: 532 IMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLIN-LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + A+  +  +   G+ L   +YN +I  L+ K    EA  L  + +E+     D  ++ I
Sbjct: 592 EVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRI 651

Query: 191 LIDGLCKAG 199
           +  GLC  G
Sbjct: 652 VFRGLCNGG 660



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 140/303 (46%), Gaps = 19/303 (6%)

Query: 16  MLNGLCKNRYTDNALRMFR-GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +L+ L        ALR+F    +K  F PE   Y  ++  L ++G     R IL+++ +S
Sbjct: 53  LLDSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNS 112

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-------YCTVIAAFVK 127
           G       +  +++      +++L  EIL  +    +  D FG       Y  ++   V 
Sbjct: 113 GCEMGTSPFLILIESY---AQFELQDEILGVVH---WMIDDFGLKPDTHFYNRMLNLLVD 166

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              LK       +M   G++ D+ ++N LI   C+  +L  A L+L++M   G   D+ T
Sbjct: 167 GNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKT 226

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            T ++ G  + G++ GA    E M + G   +  + N IV    K+G+++ A+N  + M 
Sbjct: 227 FTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMS 286

Query: 248 VKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            +D F     T++++V+ LCKA  +  A +++   L+ G         +V+ GL   G  
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV 346

Query: 303 REA 305
           +EA
Sbjct: 347 KEA 349



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK    + A ++ R +Q  G       YN +I+GL +  +   A  +
Sbjct: 573 PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINL 632

Query: 68  LKELGDSGH-APNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYT 112
            +E+ +    AP+A++Y  + +  C      +  ++ L  +  KG+ 
Sbjct: 633 FREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFV 679


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG CK      A  + + +++ G  P +VTY+ +I G C+  ++ TA  +
Sbjct: 40  PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 99

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++ ++G  PN +TY T++    RN       E+L  M+ +G   D F Y T++A   K
Sbjct: 100 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 159

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A    E         D+V+Y+TLI   CK G+L+ A  L ++M +   E D  T
Sbjct: 160 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVT 219

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            T L+DGLCK   ++ A+  LE M       N+  Y+ ++D L K G++  A  VF+ M 
Sbjct: 220 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI 279

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           V+    +  TY+S++H  C    + SA  L+     +G          ++DGL  +G   
Sbjct: 280 VRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAP 339

Query: 304 EAKKI 308
           EA ++
Sbjct: 340 EANRL 344



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 143/273 (52%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++ +++G C+    D A ++FR + ++G +P LVTYN L+ GLC+ G +  A 
Sbjct: 73  LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 132

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+ + G  P+  +Y T+M    +  K  + L++           D   Y T+IA  
Sbjct: 133 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 192

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRL EA    E+M  +  + D+V++  L++  CK  +L+ A  +L+ ME +    + 
Sbjct: 193 CKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV 252

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LIDGLCK G ++ A+   + M   G + N+  YN ++        +D A+ + E 
Sbjct: 253 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEE 312

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     + D  TY++++  LCK  R P A++L 
Sbjct: 313 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLF 345



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 165/348 (47%), Gaps = 41/348 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMF-----RGLQKHGF--------------------- 41
           P   T+N +L+GLC+N   D A  +      RGLQ   F                     
Sbjct: 110 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 169

Query: 42  ---------VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                     P++V Y+ LI GLCK GRL  A  + +++ ++   P+ +T+T +M    +
Sbjct: 170 FEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 229

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
             + +   ++L  M+ +  T +   Y ++I    K G++++A +  ++M+  G++ ++V+
Sbjct: 230 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 289

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN+LI+ +C    +++A LL++EM   G   D  T+  LIDGLCK G    A      M 
Sbjct: 290 YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK 349

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLP 268
               + ++  Y+C++    K  +ID A  +F+ M     + D  T+S++V   C A  + 
Sbjct: 350 AKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVD 409

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            A +LL   + S          ++VDG    G   EA+++    RMAK
Sbjct: 410 DAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLK--RMAK 455



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 4/301 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P    ++ ++ GLCK    D A ++F  ++++   P++VT+  L+ GLCK  RL+ 
Sbjct: 176 GDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQE 235

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A+ +L+ + D    PN ITY++++    +  + +   E+   M  +G   +   Y ++I 
Sbjct: 236 AQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIH 295

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F     +  A   ME+M   G   DI++YNTLI+  CK G+   A  L  +M+ +    
Sbjct: 296 GFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNP 355

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T++ LI G CK   I  AR   + M K     ++  ++ +V+     G +D A  + 
Sbjct: 356 DVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLL 415

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M       D +TY+S+V   CK  R+  A ++L    K G +       A++D    +
Sbjct: 416 EEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 475

Query: 300 G 300
           G
Sbjct: 476 G 476



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 137/268 (51%), Gaps = 4/268 (1%)

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           ++T+ I+I GLCKA RL  A     ++   G  PN  TY  ++    +  K      +L 
Sbjct: 7   VITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLK 66

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            MK  G   +   Y TVI  F +  ++  A     QMV +G   ++V+YNTL++  C+ G
Sbjct: 67  EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 126

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
            ++ AY LLDEM ++G + DK+++  L+ GLCK G I  A    E  +      ++ AY+
Sbjct: 127 LMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYS 186

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++  L K G++D A  +FE M       D  T+++++  LCK  RL  A ++L +    
Sbjct: 187 TLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDR 246

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKI 308
                     +++DGL  +G  R+A+++
Sbjct: 247 NCTPNVITYSSLIDGLCKTGQVRDAQEV 274



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 132/272 (48%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T++ +++GLCK     +A  +F+ +   G  P +VTYN LI G C    + +A  
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++E+  +G  P+ ITY T++    +  +      +   MK K    D   Y  +I  F 
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 368

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+ R+  A    + M+   V  D+V+++TL+  YC  G ++ A  LL+EM       D Y
Sbjct: 369 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVY 428

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L+DG CK G +  AR  L+ M K G   N+  Y  ++D   + GK   A  + E M
Sbjct: 429 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM 488

Query: 247 ----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
                  +  TY S++   C    L  A K+L
Sbjct: 489 VGNGVQPNVITYRSLIGGFCGTGDLEEARKML 520



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 144/301 (47%), Gaps = 5/301 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N +++G C     D+AL +   +   G +P+++TYN LI GLCK GR
Sbjct: 278 MIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 337

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  ++      P+ ITY+ ++    +  +  +   +   M ++    D   + T
Sbjct: 338 APEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFST 397

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +   G + +A   +E+MV      D+ +Y +L++ +CK G++  A  +L  M K+G
Sbjct: 398 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG 457

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T LID  C+AG    A   LE M   G   N+  Y  ++      G ++ A 
Sbjct: 458 CQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEAR 517

Query: 241 NVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            + E +E       D F Y  M+  LC+  R+ +A +LL +  +SG         A++ G
Sbjct: 518 KMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRG 577

Query: 296 L 296
           L
Sbjct: 578 L 578



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 141/272 (51%), Gaps = 6/272 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ ++ G CK    D A  +F  + K   +P++VT++ L++G C AG +  A  +
Sbjct: 355 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 414

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+  S  +P+  TYT+++    +  +      +L  M ++G   +   Y  +I AF +
Sbjct: 415 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 474

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-QGFECDKY 186
            G+   A   +E+MV +GVQ ++++Y +LI  +C  G LE A  +L+ +E+ +  + D +
Sbjct: 475 AGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMF 534

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + +++DGLC+ G +  A   LE + + G     + Y  ++  L +  ++  A+ V E M
Sbjct: 535 AYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEM 594

Query: 247 EV-----KDSFTYSSMVHNLCKAKRLPSASKL 273
            +      ++  Y +++  L +  R   A+ L
Sbjct: 595 TLSRKSRPNAEAYEAVIQELAREGRHEEANAL 626



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 37/213 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D +P   T+  +++G CK      A R+ + + K G  P +VTY  LI   C+AG+
Sbjct: 418 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 477

Query: 61  LRTARWILKELGDSGHAPNAITYTTI---------------------------------- 86
              A  +L+E+  +G  PN ITY ++                                  
Sbjct: 478 PTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYR 537

Query: 87  --MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM-VT 143
             M    R  +    LE+L A+K+ G       Y  +I    +   L +A + +E+M ++
Sbjct: 538 VMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLS 597

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
              + +  +Y  +I    +EG+ E A  L DE+
Sbjct: 598 RKSRPNAEAYEAVIQELAREGRHEEANALADEL 630



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 181 FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            EC+K   T TI+IDGLCKA  +  A  +   M K G   N   YN +++   K  K+  
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A  + + M+      +  TYS+++H  C+  ++ +A KL    +++G          ++ 
Sbjct: 61  AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120

Query: 295 GLRHSGCRREAKKIQSKIR 313
           GL  +G   EA ++  ++R
Sbjct: 121 GLCRNGLMDEAYELLDEMR 139



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAG 59
           M+   + P   T+  ++ G C     + A +M   L++      ++  Y +++ GLC+ G
Sbjct: 488 MVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTG 547

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM--KRKGYTFDGFG 117
           R+  A  +L+ +  SG  P    Y  +++   + ++    +E+L  M   RK    +   
Sbjct: 548 RMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRP-NAEA 606

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMV 142
           Y  VI    + GR +EA    ++++
Sbjct: 607 YEAVIQELAREGRHEEANALADELL 631


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NG CK      A  + + +++ G  P +VTY+ +I G C+  ++ TA  +
Sbjct: 159 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 218

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++ ++G  PN +TY T++    RN       E+L  M+ +G   D F Y T++A   K
Sbjct: 219 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 278

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A    E         D+V+Y+TLI   CK G+L+ A  L ++M +   E D  T
Sbjct: 279 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVT 338

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            T L+DGLCK   ++ A+  LE M       N+  Y+ ++D L K G++  A  VF+ M 
Sbjct: 339 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI 398

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           V+    +  TY+S++H  C    + SA  L+     +G          ++DGL  +G   
Sbjct: 399 VRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAP 458

Query: 304 EAKKI 308
           EA ++
Sbjct: 459 EANRL 463



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 143/273 (52%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++ +++G C+    D A ++FR + ++G +P LVTYN L+ GLC+ G +  A 
Sbjct: 192 LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 251

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+ + G  P+  +Y T+M    +  K  + L++           D   Y T+IA  
Sbjct: 252 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 311

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRL EA    E+M  +  + D+V++  L++  CK  +L+ A  +L+ ME +    + 
Sbjct: 312 CKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV 371

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LIDGLCK G ++ A+   + M   G + N+  YN ++        +D A+ + E 
Sbjct: 372 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEE 431

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     + D  TY++++  LCK  R P A++L 
Sbjct: 432 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLF 464



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 155/305 (50%), Gaps = 7/305 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  A +N +++ LCK R T  AL  FR ++    V   +T+ I+I GLCKA RL  A   
Sbjct: 92  PDAAIYNFVIHALCKARNTAKALDYFRSMECEKNV---ITWTIMIDGLCKANRLPEATTY 148

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G  PN  TY  ++    +  K      +L  MK  G   +   Y TVI  F +
Sbjct: 149 FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 208

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A     QMV +G   ++V+YNTL++  C+ G ++ AY LLDEM ++G + DK++
Sbjct: 209 QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFS 268

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+ GLCK G I  A    E  +      ++ AY+ ++  L K G++D A  +FE M 
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMR 328

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  T+++++  LCK  RL  A ++L +              +++DGL  +G  R
Sbjct: 329 ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVR 388

Query: 304 EAKKI 308
           +A+++
Sbjct: 389 DAQEV 393



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 41/348 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMF-----RGLQKHGF--------------------- 41
           P   T+N +L+GLC+N   D A  +      RGLQ   F                     
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288

Query: 42  ---------VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                     P++V Y+ LI GLCKAGRL  A  + +++ ++   P+ +T+T +M    +
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
             + +   ++L  M+ +  T +   Y ++I    K G++++A +  ++M+  G++ ++V+
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 408

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN+LI+ +C    +++A LL++EM   G   D  T+  LIDGLCK G    A      M 
Sbjct: 409 YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK 468

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLP 268
               + ++  Y+C++    K  +ID A  +F+ M     + D  T+S++V   C A  + 
Sbjct: 469 AKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVD 528

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            A +LL   + S          ++VDG    G   EA+++    RMAK
Sbjct: 529 DAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLK--RMAK 574



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 4/301 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P    ++ ++ GLCK    D A ++F  ++++   P++VT+  L+ GLCK  RL+ 
Sbjct: 295 GDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQE 354

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A+ +L+ + D    PN ITY++++    +  + +   E+   M  +G   +   Y ++I 
Sbjct: 355 AQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIH 414

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F     +  A   ME+M   G   DI++YNTLI+  CK G+   A  L  +M+ +    
Sbjct: 415 GFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNP 474

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T++ LI G CK   I  AR   + M K     ++  ++ +V+     G +D A  + 
Sbjct: 475 DVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLL 534

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M       D +TY+S+V   CK  R+  A ++L    K G +       A++D    +
Sbjct: 535 EEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 594

Query: 300 G 300
           G
Sbjct: 595 G 595



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 132/272 (48%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T++ +++GLCK     +A  +F+ +   G  P +VTYN LI G C    + +A  
Sbjct: 368 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 427

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++E+  +G  P+ ITY T++    +  +      +   MK K    D   Y  +I  F 
Sbjct: 428 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 487

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+ R+  A    + M+   V  D+V+++TL+  YC  G ++ A  LL+EM       D Y
Sbjct: 488 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVY 547

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L+DG CK G +  AR  L+ M K G   N+  Y  ++D   + GK   A  + E M
Sbjct: 548 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEM 607

Query: 247 ----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
                  +  TY S++   C    L  A K+L
Sbjct: 608 VGNGVQPNVITYRSLIGGFCGTGDLEEARKIL 639



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 144/301 (47%), Gaps = 5/301 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N +++G C     D+AL +   +   G +P+++TYN LI GLCK GR
Sbjct: 397 MIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 456

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  ++      P+ ITY+ ++    +  +  +   +   M ++    D   + T
Sbjct: 457 APEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFST 516

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +   G + +A   +E+MV      D+ +Y +L++ +CK G++  A  +L  M K+G
Sbjct: 517 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG 576

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T LID  C+AG    A   LE M   G   N+  Y  ++      G ++ A 
Sbjct: 577 CQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEAR 636

Query: 241 NVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            + E +E       D F Y  M+  LC+  R+ +A +LL +  +SG         A++ G
Sbjct: 637 KILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRG 696

Query: 296 L 296
           L
Sbjct: 697 L 697



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 144/306 (47%), Gaps = 7/306 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +   L + R  D    + +     G  P + TY ++I+GLCK+G L  A  +L+E+
Sbjct: 26  TYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEM 85

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +SG  P+A  Y  ++    + R     L+   +M+ +        +  +I    K  RL
Sbjct: 86  RESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVIT---WTIMIDGLCKANRL 142

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EAT Y  +M   G   +  +YN LIN +CK  K+  AYLLL EM++ G   +  T++ +
Sbjct: 143 PEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTV 202

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I G C+   +  A      M + G   NL  YN ++  L ++G +D A  + + M  +  
Sbjct: 203 IHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGL 262

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D F+Y +++  LCK  ++  A K+              A   ++ GL  +G   EA K
Sbjct: 263 QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACK 322

Query: 308 IQSKIR 313
           +  K+R
Sbjct: 323 LFEKMR 328



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 141/272 (51%), Gaps = 6/272 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ ++ G CK    D A  +F  + K   +P++VT++ L++G C AG +  A  +
Sbjct: 474 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 533

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+  S  +P+  TYT+++    +  +      +L  M ++G   +   Y  +I AF +
Sbjct: 534 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 593

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-QGFECDKY 186
            G+   A   +E+MV +GVQ ++++Y +LI  +C  G LE A  +L+ +E+ +  + D +
Sbjct: 594 AGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMF 653

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + +++DGLC+ G +  A   LE + + G     + Y  ++  L +  ++  A+ V E M
Sbjct: 654 AYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEM 713

Query: 247 EV-----KDSFTYSSMVHNLCKAKRLPSASKL 273
            +      ++  Y +++  L +  R   A+ L
Sbjct: 714 TLSRKSRPNAEAYEAVIQELAREGRHEEANAL 745



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 7/182 (3%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           A K++G+  + + Y  +  A ++  R+ E    ++     G+  ++ +Y  +I   CK G
Sbjct: 14  ASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSG 73

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
            L+ A  LL+EM + G   D   +  +I  LCKA N   A   L+Y   +  + N+  + 
Sbjct: 74  DLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKA---LDYFRSMECEKNVITWT 130

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++D L K  ++  A   F  M+    V + +TY+ +++  CK  ++  A  LL    +S
Sbjct: 131 IMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKES 190

Query: 281 GV 282
           G+
Sbjct: 191 GL 192



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 37/213 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D +P   T+  +++G CK      A R+ + + K G  P +VTY  LI   C+AG+
Sbjct: 537 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 596

Query: 61  LRTARWILKELGDSGHAPNAITYTTI---------------------------------- 86
              A  +L+E+  +G  PN ITY ++                                  
Sbjct: 597 PTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYR 656

Query: 87  --MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM-VT 143
             M    R  +    LE+L A+K+ G       Y  +I    +   L +A + +E+M ++
Sbjct: 657 VMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLS 716

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
              + +  +Y  +I    +EG+ E A  L DE+
Sbjct: 717 RKSRPNAEAYEAVIQELAREGRHEEANALADEL 749



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAG 59
           M+   + P   T+  ++ G C     + A ++   L++      ++  Y +++ GLC+ G
Sbjct: 607 MVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTG 666

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM--KRKGYTFDGFG 117
           R+  A  +L+ +  SG  P    Y  +++   + ++    +E+L  M   RK    +   
Sbjct: 667 RMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRP-NAEA 725

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMV 142
           Y  VI    + GR +EA    ++++
Sbjct: 726 YEAVIQELAREGRHEEANALADELL 750


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 166/316 (52%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+N++  GLCK    D A    R L   G  P+++TYNIL++ L   G+
Sbjct: 141 MLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGK 200

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                  + E+   G  PN +TY+ ++    R+ K +  + ++  MK KG T D + Y  
Sbjct: 201 WDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDP 260

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IAAF + G+L  A ++++ M+ DG   DIV+YNT++   CK G  + A  +  ++++ G
Sbjct: 261 LIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVG 320

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++  ++  L  +G+   A   +  M   G D ++  YN ++  L +DG +D AI
Sbjct: 321 CPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAI 380

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   M       +  +Y +++  LCKA R+  A ++L + +++G +  ++    +++G+
Sbjct: 381 GLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGI 440

Query: 297 RHSGCRREAKKIQSKI 312
             SG R +A ++ + +
Sbjct: 441 GFSGSRTQAMELANSL 456



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 137/279 (49%), Gaps = 6/279 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P       ++ G   +R  D A R+   L+KHG  P++  YN +I G CKA R
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANR 59

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA-MKRKGYTFDGFGYC 119
           + +A+ +L  +   G +P+ +T+  ++       K  L L++    +K          Y 
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYT 119

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I A++  G + EA   +++M++ G++ D  +YN +    CKEGK++ A+  +  +  +
Sbjct: 120 ILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSR 179

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D  T+ IL+  L   G        +  +   G + N+  Y+ ++  L +DGKI+ +
Sbjct: 180 GCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEES 239

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           +N+ + M+ K    D++ Y  ++   C+  +L  A + L
Sbjct: 240 VNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFL 278



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 150/310 (48%), Gaps = 5/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G CK    ++A  +   +++ GF P++VT+NI+I   C  G++  A  +
Sbjct: 42  PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKV 101

Query: 68  LKE-LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            +E L D+   P  ITYT +++           L++L  M  +G   D F Y  +     
Sbjct: 102 FEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLC 161

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++  A +++  + + G + D+++YN L+     +GK +     + E+  +G E +  
Sbjct: 162 KEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVV 221

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ILI  LC+ G I+ +   ++ M + G   +   Y+ ++    ++GK+D AI   + M
Sbjct: 222 TYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCM 281

Query: 247 ----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                + D   Y++++  LCK      A ++     + G     S+   ++  L  SG R
Sbjct: 282 ICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDR 341

Query: 303 REAKKIQSKI 312
             A  + S++
Sbjct: 342 YRALGMISQM 351



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 123/250 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I+++ LC++   + ++ + + +++ G  P+   Y+ LI   C+ G+L  A   
Sbjct: 218 PNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEF 277

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G  P+ + Y TIM    +N      +EI   +   G   +   Y T+++A   
Sbjct: 278 LDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWS 337

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A   + QM++ G+  D+++YN+LI+  C++G ++ A  LL +M    F+ +  +
Sbjct: 338 SGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVS 397

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++ GLCKA  I  A   L  M + G   N   Y  +++ +G  G    A+ +  S+ 
Sbjct: 398 YKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLY 457

Query: 248 VKDSFTYSSM 257
           + ++ +  S 
Sbjct: 458 IMNAISEDSF 467



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 6/212 (2%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M  K Y  D      +I  F     + +AT  M  +   G + D+ +YN +I+ +CK  +
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANR 59

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYN 224
           +E+A  +LD M+++GF  D  TH I+I   C  G I  A ++  E +        L  Y 
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYT 119

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +++    +G ID A+ + + M  +    D+FTY+ +   LCK  ++  A + + +    
Sbjct: 120 ILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSR 179

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           G +        ++  L + G   E +K  S+I
Sbjct: 180 GCKPDVITYNILLRALLNQGKWDEGEKWMSEI 211


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 163/312 (52%), Gaps = 4/312 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI   + P    ++ +++GLC+      AL  F+ ++  G   ++ TYN LI GL +AG 
Sbjct: 1111 MIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGL 1170

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             +   W L  + D G +P+A T+T ++    +  K     +IL  M+ KG   D   Y T
Sbjct: 1171 WKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNT 1230

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++     +G+L++AT   E +   G++L++ SYN LIN YCK+ K++ A+   +EM  +G
Sbjct: 1231 LMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKG 1290

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             +    T+  LI  LC++G ++ A+     M   G    L  Y  ++D L K+G ++ A+
Sbjct: 1291 LKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAM 1350

Query: 241  NVFESM---EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ++F+S+   E K +   +S ++  +C+A +L  A K      K+G+     A   +++GL
Sbjct: 1351 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 1410

Query: 297  RHSGCRREAKKI 308
             + G   EA K+
Sbjct: 1411 CNKGMLSEAVKL 1422



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 156/306 (50%), Gaps = 5/306 (1%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            T+ I++NGLCK R T  A+++   + K     ++ TY ++I  LCK G    A  +  E+
Sbjct: 1053 TYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEM 1111

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              +G  P+ + Y+++M    R  + K  LE    M+ +G + D + Y ++I    + G  
Sbjct: 1112 IGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLW 1171

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            KE T ++  MV  G   D  ++  LI+  CKEGK+  A  +L+ M  +G E D  T+  L
Sbjct: 1172 KEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTL 1231

Query: 192  IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
            ++GLC  G ++ A    E +   G   N+ +YN +++   KD KID A   FE M  K  
Sbjct: 1232 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL 1291

Query: 250  --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
               + TY++++  LC++ R+ +A KL +     G  +  S    ++DGL  +G   EA  
Sbjct: 1292 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMD 1351

Query: 308  IQSKIR 313
            +   I+
Sbjct: 1352 LFQSIK 1357



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 139/278 (50%), Gaps = 4/278 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+    +P   TF I+++GLCK      A ++   ++  G  P+++TYN L+ GLC  G+
Sbjct: 1181 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQ 1240

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L  A  + + L D G   N  +Y  ++    +++K          M+ KG       Y T
Sbjct: 1241 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNT 1300

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I A  + GR++ A     +M T G  L + +Y  L++  CK G LE A  L   ++K  
Sbjct: 1301 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE 1360

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             + +    +IL+DG+C+AG ++ A    + ++K G + +  AYN +++ L   G +  A+
Sbjct: 1361 HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAV 1420

Query: 241  NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
             +   ME K    DS T++ ++ NL K   +  A +LL
Sbjct: 1421 KLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLL 1458



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 150/335 (44%), Gaps = 44/335 (13%)

Query: 2    ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFR-----GLQ------------------- 37
            +C +  PCT TFN +L  + K  Y      M+R     G+Q                   
Sbjct: 938  LCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAV 997

Query: 38   -----------KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
                       K GF P+ VT   L+KG+     +  A  +  E+   G   +A TY  +
Sbjct: 998  GCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGIL 1057

Query: 87   MKCCFRNRKYKLGLEILSAMKR--KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
            +    + RK  L +++   MK   KG   D F Y  +I A  K G   EA D   +M+  
Sbjct: 1058 INGLCKARKTGLAIKLHEKMKGNCKG---DVFTYGMIIDALCKDGMTTEALDMFSEMIGA 1114

Query: 145  GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
            G+  D+V Y++L++  C+ G+L+ A     EME +G   D YT+  LI GL +AG  K  
Sbjct: 1115 GILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEV 1174

Query: 205  RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
               L  M   GF  +   +  ++D L K+GK+  A  + E M  K    D  TY+++++ 
Sbjct: 1175 TWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNG 1234

Query: 261  LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            LC   +L  A+KL  S    G+++   +   +++G
Sbjct: 1235 LCLVGQLEDATKLFESLADRGIKLNVFSYNILING 1269



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 135/280 (48%), Gaps = 6/280 (2%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P   T+N ++NGLC     ++A ++F  L   G    + +YNILI G CK  ++  A   
Sbjct: 1223 PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRF 1282

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             +E+   G  P+ +TY T++    ++ + +   ++   M+  G       YC ++    K
Sbjct: 1283 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCK 1342

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             G L+EA D  + +     + +I  ++ L++  C+ GKLE A+   DE+ K G E D   
Sbjct: 1343 NGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIA 1402

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + ILI+GLC  G +  A   L  M + G   +   +N I+  L K+ +I  AI + E M 
Sbjct: 1403 YNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMR 1462

Query: 248  VKDSFTYSSMVHN--LCKAKRLPSASKLLLS---CLKSGV 282
             ++ F+    V +  LC A   P     L+S    L+ GV
Sbjct: 1463 NRN-FSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 1501



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 88/187 (47%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P T T+N ++  LC++     A ++F  +Q  G   +L TY +L+ GLCK G L  A 
Sbjct: 1291 LKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAM 1350

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + + +  + H PN   ++ ++    R  K +   +    + + G   D   Y  +I   
Sbjct: 1351 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 1410

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               G L EA   + QM   G   D +++N +I    KE ++  A  LL+EM  + F  D+
Sbjct: 1411 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDE 1470

Query: 186  YTHTILI 192
               ++L+
Sbjct: 1471 AVTSMLL 1477



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 120/271 (44%), Gaps = 5/271 (1%)

Query: 47   TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            T+N L+  + K G   T   + +++ D G  P+  T   ++ CC   R    G  +    
Sbjct: 948  TFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGF 1007

Query: 107  KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
             ++G+  D     T++        + +A    ++M   G+  D  +Y  LIN  CK  K 
Sbjct: 1008 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKT 1067

Query: 167  EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
              A  L ++M K   + D +T+ ++ID LCK G    A      M   G   ++  Y+ +
Sbjct: 1068 GLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSL 1126

Query: 227  VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +D L + G++  A+  F+ ME +    D +TY+S++H L +A      +  L   +  G 
Sbjct: 1127 MDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF 1186

Query: 283  RILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
                     ++DGL   G   EA++I   +R
Sbjct: 1187 SPDAFTFTILIDGLCKEGKVGEAQQILELMR 1217



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 55/105 (52%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P T  +NI++NGLC       A+++   +++ G +P+ +T+N++I+ L K   +  A 
Sbjct: 1396 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAI 1455

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
             +L+E+ +   +P+    + ++     + ++   L  L    +KG
Sbjct: 1456 QLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKG 1500


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 159/312 (50%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G L P   T+N +++GLCK    + A+++   +      P  VTYN +I  LCK  R
Sbjct: 334 MLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENR 393

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I + L   G  P+  T+ ++++    +  +K  +++   MK KG   D F Y  
Sbjct: 394 VDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNM 453

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +     +L+EA + +++M  +G   ++V YNTLI+ +CK  ++E A  + DEME QG
Sbjct: 454 LIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQG 513

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LIDGLCK+  ++ A   ++ M   G   +   YN ++    K G I  A 
Sbjct: 514 VSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAA 573

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ ++M       D  TY++++  LCKA R+  AS+LL S    G+ +   A   V+  L
Sbjct: 574 DIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQAL 633

Query: 297 RHSGCRREAKKI 308
                  EA ++
Sbjct: 634 FKRNRTHEAMRL 645



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 152/281 (54%), Gaps = 5/281 (1%)

Query: 8   PCT-ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           PCT  T N+++NG CK    D AL   +     GF P+  TYN L+ GLCK G  + A  
Sbjct: 270 PCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAME 329

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++  +   G  P+  TY +++    +  + +  ++IL  M  +  + +   Y  +I++  
Sbjct: 330 VVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLC 389

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  R+ EAT+    + + G+  D+ ++N+LI   C     ++A  L +EM+ +G   D++
Sbjct: 390 KENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEF 449

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ +LID LC +  ++ A   L+ M   G   N+  YN ++D   K+ +I+ A  +F+ M
Sbjct: 450 TYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEM 509

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           E+    +DS TY++++  LCK+KR+  A++L+   +  G+R
Sbjct: 510 ELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLR 550



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 151/304 (49%), Gaps = 4/304 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D +P   T+N +++ LCK    D A  + R L   G +P++ T+N LI+GLC +  
Sbjct: 369 MVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSN 428

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            ++A  + +E+   G  P+  TY  ++     +RK +  L +L  M+  G   +   Y T
Sbjct: 429 HKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNT 488

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K  R++EA +  ++M   GV  D V+YNTLI+  CK  ++E A  L+D+M  +G
Sbjct: 489 LIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEG 548

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              DK+T+  L+   CK G+IK A   ++ M   G + ++  Y  ++  L K G++  A 
Sbjct: 549 LRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVAS 608

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +  S+++K        Y+ ++  L K  R   A +L    L           K V  GL
Sbjct: 609 RLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGL 668

Query: 297 RHSG 300
            + G
Sbjct: 669 CNGG 672



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 148/308 (48%), Gaps = 12/308 (3%)

Query: 6   LTPCTATFNIMLNGLC---KNRYTDNA-LRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           + P T  +N++LN L    K +  ++A   M R   +H    ++ T+NILIK LCKA ++
Sbjct: 164 IKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRH----DVSTFNILIKALCKAHQV 219

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
           R A  +++E+   G +P+  T+TTIM+           L I   M   G          +
Sbjct: 220 RPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVL 279

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F K GR+ +A  ++++ V++G + D  +YNTL+N  CK G  + A  ++D M   G 
Sbjct: 280 INGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGL 339

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           + D YT+  LI GLCK G I+ A   L+ M       N   YN I+  L K+ ++D A  
Sbjct: 340 DPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATE 399

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +   +  K    D  T++S++  LC +    SA  L       G R  +     ++D L 
Sbjct: 400 IARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLC 459

Query: 298 HSGCRREA 305
            S    EA
Sbjct: 460 SSRKLEEA 467



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 78/328 (23%)

Query: 24  RYTDN--ALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG----- 75
           R TD   ALR+F    K   FVP    Y  +++ L KAG     R +L+E+  SG     
Sbjct: 73  RQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDR 132

Query: 76  -------------------------------HAPNAITYTTIMKCCFRNRKYKLGLEILS 104
                                            P+   Y  ++       K KL     S
Sbjct: 133 GIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHS 192

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY----------- 153
           +M R+    D   +  +I A  K  +++ A   ME+M + G+  D  ++           
Sbjct: 193 SMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGG 252

Query: 154 ------------------------NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
                                   N LIN +CK+G+++ A   + E   +GF  D++T+ 
Sbjct: 253 NLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYN 312

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            L++GLCK G+ K A   ++ M   G D ++  YN ++  L K G+I+ A+ + + M  +
Sbjct: 313 TLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSR 372

Query: 250 D----SFTYSSMVHNLCKAKRLPSASKL 273
           D    + TY++++ +LCK  R+  A+++
Sbjct: 373 DCSPNAVTYNAIISSLCKENRVDEATEI 400



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 103/257 (40%), Gaps = 8/257 (3%)

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           +   LR   W  K+       P++  Y  I++   +   ++    +L  MK  G  FD  
Sbjct: 77  EVAALRVFNWASKQ---PNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRG 133

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            +   + ++ K     E    ++ M  +  ++ D   YN L+N+     KL+        
Sbjct: 134 IFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSS 193

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M ++    D  T  ILI  LCKA  ++ A L +E M   G   +   +  I+    + G 
Sbjct: 194 MVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGN 253

Query: 236 IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           +D A+ + E M          T + +++  CK  R+  A   +   +  G R  +     
Sbjct: 254 LDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNT 313

Query: 292 VVDGLRHSGCRREAKKI 308
           +V+GL   G  + A ++
Sbjct: 314 LVNGLCKIGHAKHAMEV 330


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 151/286 (52%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFNI+++G C++     A ++F  +Q+ G  P +VTYN LI GLC  G+
Sbjct: 290 MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGK 349

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++   G  PN +TY  ++    + +  K   E+L  + ++G   +   + T
Sbjct: 350 LDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+ K GR+ +A      M+  GV  ++ +YN LI  +C+EG ++ A  L  EME  G
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+ IL+D LCK G  + A   L+ M ++G + +   YN ++D   ++G    A+
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAAL 529

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           NV   ME K    +  TY+ ++   C   +L  A++LL   L+ G+
Sbjct: 530 NVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL 575



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 4/305 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF++++NGLCK      A  +   ++  GF P ++TYN +I G CKAG++  A  +LK
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+      PN IT+  ++    R+       ++   M+R+G   +   Y ++I      G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L EA    ++M   G++ ++V+YN LIN +CK+  L+ A  +LD++ K+G   +  T  
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LID   KAG +  A L    M   G   N+  YNC++    ++G +  A  + + ME  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D  TY+ +V  LCK      A +LL    + G+        A++DG    G    A
Sbjct: 469 GLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAA 528

Query: 306 KKIQS 310
             +++
Sbjct: 529 LNVRT 533



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 109/231 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NG CK +    A  M   + K G  P ++T+N LI    KAGR+  A 
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAF 424

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + D+G  PN  TY  ++    R    K   ++   M+  G   D   Y  ++ A 
Sbjct: 425 LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDAL 484

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  ++A   +++M   G+    ++YN LI+ Y +EG   AA  +   MEK+G   + 
Sbjct: 485 CKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANI 544

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            T+ +LI G C  G ++ A   L  M + G   N   Y+ + D + + G I
Sbjct: 545 VTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFI 595



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 31/269 (11%)

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +VT++++I GLCK G+ + A  +++++   G +P+ ITY TI+    +  K      +L 
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            M  K    +   +  +I  F +   +  A    E+M   G+Q ++V+YN+LIN  C  G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           KL+ A  L D+M   G + +  T+  LI+G CK   +K AR  L+ + K G   N+  +N
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 225 CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            ++D  GK G++D            D+F   SM+                   L +GV  
Sbjct: 409 TLIDAYGKAGRMD------------DAFLLRSMM-------------------LDTGVCP 437

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             S    ++ G    G  +EA+K+  ++ 
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEME 466



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 7/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTARWILKELGD 73
           +L+   KN +  N+  +F  L   G       +  ++L+    K G +  A       GD
Sbjct: 129 LLDSFAKNAHYSNS-TIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGD 187

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G   +A++   ++    +  +  +   +   M R+    +   +  VI    K+G+ ++
Sbjct: 188 YGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQK 247

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A D +E M   G    +++YNT+I+ YCK GK+  A  LL EM  +    ++ T  ILID
Sbjct: 248 AGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID 307

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           G C+  N+  A+   E M + G   N+  YN +++ L  +GK+D A+ + + M       
Sbjct: 308 GFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKP 367

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +  TY+++++  CK K L  A ++L    K G+
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGL 400



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 98/203 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN +++   K    D+A  +   +   G  P + TYN LI G C+ G ++ AR
Sbjct: 400 LAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEAR 459

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+  +G   + +TY  ++    +  + +  + +L  M   G       Y  +I  +
Sbjct: 460 KLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGY 519

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G    A +    M   G + +IV+YN LI  +C +GKLE A  LL+EM ++G   ++
Sbjct: 520 FREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNR 579

Query: 186 YTHTILIDGLCKAGNIKGARLHL 208
            T+ IL D + + G I     HL
Sbjct: 580 TTYDILRDEMMEKGFIPDIDGHL 602



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 96/196 (48%), Gaps = 4/196 (2%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A+VK G +  A +  ++    G +L  +S N ++    KEG++     +  EM ++ 
Sbjct: 165 LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRR 224

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T  ++I+GLCK G  + A   +E M   GF  ++  YN I+D   K GK+  A 
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + M  K    +  T++ ++   C+ + + +A K+     + G++       ++++GL
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344

Query: 297 RHSGCRREAKKIQSKI 312
             +G   EA  +Q K+
Sbjct: 345 CSNGKLDEALGLQDKM 360


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 171/325 (52%), Gaps = 7/325 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++ G+CK    D A  M R L+  G  P++++YNIL++ L   G+
Sbjct: 250 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGK 309

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ ++      PN +TY+ ++    R+ K +  + +L  MK KG T D + Y  
Sbjct: 310 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 369

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IAAF + GRL  A +++E M++DG   DIV+YNT++   CK GK + A  +  ++ + G
Sbjct: 370 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 429

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  ++  +   L  +G+ I+   + LE ++  G D +   YN ++  L ++G +D A
Sbjct: 430 CSPNSSSYNTMFSALWSSGDKIRALHMILEMVSN-GIDPDEITYNSMISCLCREGMVDKA 488

Query: 240 INVFESM---EVKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M   E   S  TY+ ++   CKA R+  A  +L S + +G R  ++    +++G
Sbjct: 489 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEG 548

Query: 296 LRHSGCRREAKKIQSK-IRMAKISH 319
           +  +G R EA ++ +  +R+  IS 
Sbjct: 549 IGFAGYRAEAMELANDLVRINAISE 573



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N ++NG CK    D+A R+   ++   F P+ VTYNI+I  LC  G+L  A  +
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 211

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +L      P  ITYT +++           L++L  M  +G   D F Y T+I    K
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCK 271

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A + +  +   G + D++SYN L+     +GK E    L+ +M  +  + +  T
Sbjct: 272 EGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 331

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILI  LC+ G I+ A   L+ M + G   +  +Y+ ++    ++G++D AI   E+M 
Sbjct: 332 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 391

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               + D   Y++++  LCK  +   A ++     + G     S+   +   L  SG
Sbjct: 392 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 448



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 133/299 (44%), Gaps = 38/299 (12%)

Query: 21  CKNRYTDNALRMFRGLQKHGFVPELV---------------------------------- 46
           C++     +L +   + + G+ P+++                                  
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVF 155

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            YN LI G CK  R+  A  +L  +     +P+ +TY  ++       K  L L++L  +
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
                      Y  +I A +  G + EA   +++M++ G++ D+ +YNT+I   CKEG +
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMV 275

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A+ ++  +E +G E D  ++ IL+  L   G  +     +  M     D N+  Y+ +
Sbjct: 276 DRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 335

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +  L +DGKI+ A+N+ + M+ K    D+++Y  ++   C+  RL  A + L + +  G
Sbjct: 336 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG 394



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 5/225 (2%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           R+  Y   L +L  M RKGY  D      +I  F  +  + +A   ME +   G Q D+ 
Sbjct: 97  RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVF 155

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YN LIN +CK  +++ A  +LD M  + F  D  T+ I+I  LC  G +  A   L+ +
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
                   +  Y  +++    +G +D A+ + + M  +    D FTY++++  +CK   +
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMV 275

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             A +++ +    G      +   ++  L + G   E +K+ +K+
Sbjct: 276 DRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 320


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 156/312 (50%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P    +N ++NGLCKNR  +NAL +F  ++K G   + VTYN LI GL  +GR   A 
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 239

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+++      PN I +T ++    +         +   M R+    + F Y ++I  F
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGF 299

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L +A    + MV+ G   D+V+YNTLI  +CK  ++E    L  EM  QG   D 
Sbjct: 300 CIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDA 359

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LI G C+AG +  A+     M   G   ++  YN ++D L  +GKI+ A+ + E 
Sbjct: 360 FTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVED 419

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++      D  TY+ ++  LC+  +L  A  L  S  + GV+    A   ++ GL   G 
Sbjct: 420 LQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGL 479

Query: 302 RREAKKIQSKIR 313
           +REA K+  +++
Sbjct: 480 QREADKLCRRMK 491



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 133/275 (48%), Gaps = 4/275 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F I+++  C+      AL +   + K GF P +VT   L+ G C+  R + A  ++  +
Sbjct: 116 SFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 175

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN + Y T++    +NR     LE+   M++KG   D   Y T+I+     GR 
Sbjct: 176 DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRW 235

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A   +  MV   +  +++ +  LI+ + KEG L  A  L  EM ++    + +T+  L
Sbjct: 236 TDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSL 295

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I+G C  G +  A+   + M   G   ++  YN ++    K  +++  + +F  M     
Sbjct: 296 INGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGL 355

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           V D+FTY++++H  C+A +L  A K+    +  GV
Sbjct: 356 VGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 390



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 129/260 (49%), Gaps = 1/260 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F  +++   K      A  +++ + +   VP + TYN LI G C  G 
Sbjct: 245 MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 304

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+++   +   G  P+ +TY T++    ++++ + G+++   M  +G   D F Y T
Sbjct: 305 LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + + G+L  A     +MV  GV  DIV+YN L++  C  GK+E A +++++++K  
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 424

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+ I+I GLC+   +K A      + + G   +  AY  ++  L + G    A 
Sbjct: 425 MDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREAD 484

Query: 241 NVFESMEVKDSFTYSSMVHN 260
            +   M+ +D F  S  +++
Sbjct: 485 KLCRRMK-EDGFMPSERIYD 503



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 107/241 (44%), Gaps = 4/241 (1%)

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  S   P+ + +T ++    +  K+ + + +   M+  G + D + +  +I  F +  
Sbjct: 69  EMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCS 128

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL  A   + +M+  G +  IV+  +L+N +C+  + + A  L+D M+  GF  +   + 
Sbjct: 129 RLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYN 188

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            +I+GLCK  ++  A      M K G  ++   YN ++  L   G+   A  +   M  +
Sbjct: 189 TVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKR 248

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               +   +++++    K   L  A  L    ++  V        ++++G    GC  +A
Sbjct: 249 KIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDA 308

Query: 306 K 306
           K
Sbjct: 309 K 309



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           IV +  ++ +  K  K +    L  +ME  G   D Y+ TILI   C+   +  A   L 
Sbjct: 79  IVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLG 138

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M K+GF  ++     +++   +  +   A+++ +SM+    V +   Y+++++ LCK +
Sbjct: 139 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 198

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            L +A ++     K G+R        ++ GL +SG   +A ++   +   KI
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 250



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NI++ GLC+      A  +FR L + G  P+ + Y  +I GLC+ G  R A  + + +
Sbjct: 431 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 490

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
            + G  P+   Y   +    R+    L  E++ A
Sbjct: 491 KEDGFMPSERIYDETL----RDHYTSLSAELIKA 520


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 156/300 (52%), Gaps = 5/300 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   TFNI++N LCK      A+R+F  ++  G  P+ VTYNILI  LC +G+L  A 
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKAL 461

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKE+  SG   + +TY TI+    + R+ +   E+   M   G   +   + T+I   
Sbjct: 462 DLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGL 521

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               R+ +A + ++QM+++G+Q + V+YN+++  YCK+G +  A  +L  M   GFE D 
Sbjct: 522 CNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDV 581

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GLCKA   + A   L  M   G     +AYN ++  L +      A+++F  
Sbjct: 582 VTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFRE 641

Query: 246 M-EV---KDSFTYSSMVHNLCK-AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M EV    D+FTY  +   LC+    +  A   L+    +G     S+ + + +GL + G
Sbjct: 642 MTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLG 701



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 147/281 (52%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P + T N+++NG CK     +AL   +     GF P+ VT++  + GLC+ G +  A  
Sbjct: 263 SPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALK 322

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +   G  P+  TY+T++ C   N + +    I++ M   G   D   + T+I A  
Sbjct: 323 VLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALC 382

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
              +L+EA D   ++   G+  ++ ++N LIN  CK G    A  L +EM+  G   D+ 
Sbjct: 383 TENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEV 442

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ ILID LC +G +  A   L+ M   G   +   YN I+D L K  +I+ A  VF+ M
Sbjct: 443 TYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQM 502

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +V    +++ T+++++  LC A+R+  A++L+   +  G++
Sbjct: 503 DVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQ 543



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 149/297 (50%), Gaps = 6/297 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+ P   TF  ++ G  +    + ALR+   + + G  P  VT N+LI G CK GR+  A
Sbjct: 226 DVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDA 285

Query: 65  R-WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             +I +E+ D G  P+ +T++T +    +N      L++L  M ++G   D + Y TVI 
Sbjct: 286 LGYIQQEIAD-GFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVIN 344

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
                G L+EA   + QMV  G   D  ++NTLI   C E +LE A  L  E+  +G   
Sbjct: 345 CLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSP 404

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + YT  ILI+ LCK G+   A    E M   G   +   YN ++D L   GK+  A+++ 
Sbjct: 405 NVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLL 464

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + MEV    + + TY++++  LCK +R+  A ++      +G+         ++DGL
Sbjct: 465 KEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGL 521



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 153/343 (44%), Gaps = 39/343 (11%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           I     P   TF+  +NGLC+N + D+AL++   + + G  P++ TY+ +I  LC  G L
Sbjct: 293 IADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGEL 352

Query: 62  RTARWILKELGDSGHAPNAITYTT-IMKCCFRNR-------------------------- 94
             A+ I+ ++ DSG  P+  T+ T I+  C  N+                          
Sbjct: 353 EEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNIL 412

Query: 95  --------KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                      L + +   MK  G T D   Y  +I      G+L +A D +++M   G 
Sbjct: 413 INALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGC 472

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
               V+YNT+I+  CK  ++E A  + D+M+  G   +  T   LIDGLC A  I  A  
Sbjct: 473 PQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAE 532

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            ++ M   G   N   YN I+    K G I  A ++ ++M       D  TY+++++ LC
Sbjct: 533 LVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLC 592

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           KA+R  +A KLL      G++    A   V+  L      R+A
Sbjct: 593 KARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDA 635



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 152/325 (46%), Gaps = 47/325 (14%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           +   G  P++VT+N +I  LC+A + RTA  +L+E+     AP+  T+TT+M+       
Sbjct: 187 MSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGS 246

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            +  L + + M   G +        +I  + K+GR+ +A  Y++Q + DG + D V+++T
Sbjct: 247 IEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFST 306

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM---- 211
            +N  C+ G ++ A  +L  M ++G E D YT++ +I+ LC  G ++ A+  +  M    
Sbjct: 307 FVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSG 366

Query: 212 ------------------NKI-------------GFDSNLEAYNCIVDRLGKDGKIDHAI 240
                             N++             G   N+  +N +++ L K G    A+
Sbjct: 367 CLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAV 426

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +FE M+      D  TY+ ++ NLC + +L  A  LL     SG          ++DGL
Sbjct: 427 RLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGL 486

Query: 297 RHSGCRR----EAKKIQSKIRMAKI 317
               C+R    EA+++  ++ +  I
Sbjct: 487 ----CKRRRIEEAEEVFDQMDVTGI 507



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           N L MF G+Q +  V     YN L+  L +  +++       E+   G  P+ +T+ T++
Sbjct: 150 NQLDMF-GVQANTEV-----YNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVI 203

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
               R R+ +  + +L  M       D   + T++  FV+ G ++ A     +M   G  
Sbjct: 204 DALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCS 263

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
              V+ N LIN YCK G++  A   + +    GFE D+ T +  ++GLC+ G++  A   
Sbjct: 264 PTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKV 323

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           L  M + G + ++  Y+ +++ L  +G+++ A  +   M     + D+ T+++++  LC 
Sbjct: 324 LGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCT 383

Query: 264 AKRLPSASKL 273
             +L  A  L
Sbjct: 384 ENQLEEALDL 393



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 4/211 (1%)

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G   N   Y  ++       K KL     + M  +G   D   + TVI A  +  + + A
Sbjct: 156 GVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTA 215

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              +E+M +  V  D  ++ TL+  + +EG +EAA  L   M + G      T  +LI+G
Sbjct: 216 VLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLING 275

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
            CK G +  A  +++     GF+ +   ++  V+ L ++G +DHA+ V   M  +    D
Sbjct: 276 YCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPD 335

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +TYS++++ LC    L  A  ++   + SG
Sbjct: 336 VYTYSTVINCLCNNGELEEAKGIVNQMVDSG 366



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 1/157 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N +L   CK      A  + + +  +GF  ++VTY  LI GLCKA R
Sbjct: 537 MISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARR 596

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+ +   G  P    Y  +++  FR    +  L +   M   G   D F Y  
Sbjct: 597 TQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKI 656

Query: 121 VIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           V     +  G +KEA D++ +M  +G   +  S+  L
Sbjct: 657 VFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRML 693


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 156/312 (50%), Gaps = 4/312 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
              P    +N ++NGLCKNR  +NAL +F  ++K G   + VTYN LI GL  +GR   A 
Sbjct: 705  FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 764

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +L+++      PN I +T ++    +         +   M R+    + F Y ++I  F
Sbjct: 765  RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGF 824

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               G L +A    + MV+ G   D+V+YNTLI  +CK  ++E    L  EM  QG   D 
Sbjct: 825  CIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDA 884

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +T+  LI G C+AG +  A+     M   G   ++  YN ++D L  +GKI+ A+ + E 
Sbjct: 885  FTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVED 944

Query: 246  MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            ++      D  TY+ ++  LC+  +L  A  L  S  + GV+    A   ++ GL   G 
Sbjct: 945  LQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGL 1004

Query: 302  RREAKKIQSKIR 313
            +REA K+  +++
Sbjct: 1005 QREADKLCRRMK 1016



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 153/317 (48%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +N +++GLCKN   + AL +   ++K G   ++VTYN L+ GLC +GR
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGR 226

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L+++      P+ +T+T ++    +        E+   M +     +   Y +
Sbjct: 227 WSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      GRL +A    + M + G   ++V+YNTLI+ +CK   ++    L   M  +G
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D +T+  LI G C+ G ++ A     +M       ++  +  ++  L  +G+I+ A+
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESAL 406

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             F+ M   + +     Y+ M+H LCKA ++  A +L       GV+        ++ GL
Sbjct: 407 VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGL 466

Query: 297 RHSGCRREAKKIQSKIR 313
             +G RREA ++  +++
Sbjct: 467 CKNGPRREADELIRRMK 483



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 133/263 (50%), Gaps = 4/263 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F I+++  C+      AL +   + K G+ P +VT+  L+ G C   R+  A  ++  +
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG+ PN + Y T++    +N +  + LE+L+ M++KG   D   Y T++      GR 
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A   +  M+   +  D+V++  LI+++ K+G L+ A  L  EM +   + +  T+  +
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSI 287

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I+GLC  G +  A+   + M   G   N+  YN ++    K   +D  + +F+ M  +  
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 250 --DSFTYSSMVHNLCKAKRLPSA 270
             D FTY++++H  C+  +L  A
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVA 370



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 143/300 (47%), Gaps = 8/300 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+N +L GLC +    +A RM R + K    P++VT+  LI    K G L  A+ + K
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYK 270

Query: 70  ELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           E+  S   PN +TY +I+   C   R Y    +    M  KG   +   Y T+I+ F K 
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYD-AKKTFDLMASKGCFPNVVTYNTLISGFCKF 329

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
             + E     ++M  +G   DI +YNTLI+ YC+ GKL  A  +   M  +    D  TH
Sbjct: 330 RMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITH 389

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            IL+ GLC  G I+ A +  + M +      + AYN ++  L K  K++ A  +F  + V
Sbjct: 390 CILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPV 449

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           +    D+ TY+ M+  LCK      A +L+    + G+    +A+   ++   HS   +E
Sbjct: 450 EGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLE--EHSSSNKE 507



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 133/275 (48%), Gaps = 4/275 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F I+++  C+      AL +   + K GF P +VT   L+ G C+  R + A  ++  +
Sbjct: 641 SFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 700

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN + Y T++    +NR     LE+   M++KG   D   Y T+I+     GR 
Sbjct: 701 DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRW 760

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A   +  MV   +  +++ +  LI+ + KEG L  A  L  EM ++    + +T+  L
Sbjct: 761 TDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSL 820

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I+G C  G +  A+   + M   G   ++  YN ++    K  +++  + +F  M     
Sbjct: 821 INGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGL 880

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           V D+FTY++++H  C+A +L  A K+    +  GV
Sbjct: 881 VGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 915



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 129/260 (49%), Gaps = 1/260 (0%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+   + P    F  +++   K      A  +++ + +   VP + TYN LI G C  G 
Sbjct: 770  MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 829

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L  A+++   +   G  P+ +TY T++    ++++ + G+++   M  +G   D F Y T
Sbjct: 830  LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 889

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I  + + G+L  A     +MV  GV  DIV+YN L++  C  GK+E A +++++++K  
Sbjct: 890  LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 949

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             + D  T+ I+I GLC+   +K A      + + G   +  AY  ++  L + G    A 
Sbjct: 950  MDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREAD 1009

Query: 241  NVFESMEVKDSFTYSSMVHN 260
             +   M+ +D F  S  +++
Sbjct: 1010 KLCRRMK-EDGFMPSERIYD 1028



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 121/250 (48%), Gaps = 4/250 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++A  +F  +     +P +V +  L+       R  T  +  +++   G + +  ++T +
Sbjct: 53  EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTIL 112

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  +    L +L  M + GY      + +++  F  + R+ +A   +  MV  G 
Sbjct: 113 IHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGY 172

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + ++V YNTLI+  CK G+L  A  LL+EMEK+G   D  T+  L+ GLC +G    A  
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLC 262
            L  M K   + ++  +  ++D   K G +D A  +++ M       ++ TY+S+++ LC
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC 292

Query: 263 KAKRLPSASK 272
              RL  A K
Sbjct: 293 MHGRLYDAKK 302



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N ++NGLC +    +A + F  +   G  P +VTYN LI G CK   
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRM 331

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + + +   G   +  TY T++    +  K ++ L+I   M  +  T D   +C 
Sbjct: 332 VDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCI 391

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G ++ A    + M      + IV+YN +I+  CK  K+E A+ L   +  +G
Sbjct: 392 LLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEG 451

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
            + D  T+TI+I GLCK G  + A   +  M + G    + A
Sbjct: 452 VKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA 493



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 4/258 (1%)

Query: 54  GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
           G   + R   A  +  E+  S   P+ + +T ++      R+Y+  +     M+  G + 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D + +  +I  F +  RL  A   + +M+  G +  IV++ +L++ +C   ++  A+ L+
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
             M K G+E +   +  LIDGLCK G +  A   L  M K G  +++  YN ++  L   
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224

Query: 234 GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G+   A  +   M  +    D  T+++++    K   L  A +L    ++S V       
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 290 KAVVDGLRHSGCRREAKK 307
            ++++GL   G   +AKK
Sbjct: 285 NSIINGLCMHGRLYDAKK 302



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 107/241 (44%), Gaps = 4/241 (1%)

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  S   P+ + +T ++    +  K+ + + +   M+  G + D + +  +I  F +  
Sbjct: 594 EMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCS 653

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL  A   + +M+  G +  IV+  +L+N +C+  + + A  L+D M+  GF  +   + 
Sbjct: 654 RLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYN 713

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            +I+GLCK  ++  A      M K G  ++   YN ++  L   G+   A  +   M  +
Sbjct: 714 TVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKR 773

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               +   +++++    K   L  A  L    ++  V        ++++G    GC  +A
Sbjct: 774 KIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDA 833

Query: 306 K 306
           K
Sbjct: 834 K 834



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           IV +  ++ +  K  K +    L  +ME  G   D Y+ TILI   C+   +  A   L 
Sbjct: 604 IVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLG 663

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M K+GF  ++     +++   +  +   A+++ +SM+    V +   Y+++++ LCK +
Sbjct: 664 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            L +A ++     K G+R        ++ GL +SG   +A ++   +   KI
Sbjct: 724 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 775



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            T+NI++ GLC+      A  +FR L + G  P+ + Y  +I GLC+ G  R A  + + +
Sbjct: 956  TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 1015

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
             + G  P+   Y   +    R+    L  E++ A
Sbjct: 1016 KEDGFMPSERIYDETL----RDHYTSLSAELIKA 1045


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 162/316 (51%), Gaps = 7/316 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRT 63
           + P   ++N +L GLCK      A  + R +   G    P+LVTY+ L+ G CKAG++  
Sbjct: 41  IQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEE 100

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           +R +LKE+   G  P+A+ YT +M    ++ +    LE+L  M R G       + T+I+
Sbjct: 101 SRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLIS 160

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              +   L+ A   ++ M   GV+ D+V+YNTL++  CK G+L+ A  LL+ M+  G   
Sbjct: 161 GCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAP 220

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D   ++  + GLCK+G +  A   LE M     D N+  YN I+D L K GKID A+ + 
Sbjct: 221 DVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMM 280

Query: 244 ESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           E M   D        YS++V  LCK  R   A  ++ +  ++G R       ++V+GL  
Sbjct: 281 EQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCK 340

Query: 299 SGCRREAKKIQSKIRM 314
           +G   EA +   ++ M
Sbjct: 341 AGKIEEAVEAVREMAM 356



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 143/265 (53%), Gaps = 10/265 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++GLCK      A ++   ++  G  P++V Y+  + GLCK+G++  A  +L+++
Sbjct: 189 TYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQM 248

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGR 130
            DS H PN +TY TI+    ++ K    LE++  M    G   +  GY TV+    K+GR
Sbjct: 249 RDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGR 308

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            +EA   ME M   G + D+V+Y++L+N  CK GK+E A   + EM  +G + +  T+  
Sbjct: 309 TQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCS 368

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGF-----DSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           L+ GLC  G +  A   +E M+  G        ++  YN ++  L K G+ID A+  F+ 
Sbjct: 369 LVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428

Query: 246 MEVK----DSFTYSSMVHNLCKAKR 266
           M  +    D  +YS++V  L ++ R
Sbjct: 429 MRSQGCDPDGVSYSTIVEGLARSGR 453



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 154/310 (49%), Gaps = 10/310 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TFN +++G C+ +  + A  + + +   G   ++VTYN L+ GLCKAGR
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGR 202

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +L+ +  SG AP+ + Y++ +    ++ K     ++L  M+   +  +   Y T
Sbjct: 203 LQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNT 262

Query: 121 VIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++    K G++  A + MEQM + DG  L++V Y+T+++  CK G+ + A  +++ M + 
Sbjct: 263 ILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARA 322

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T++ L++GLCKAG I+ A   +  M   G   N   Y  +V  L   G++  A
Sbjct: 323 GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEA 382

Query: 240 INVFESMEV---------KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
             + E M               TY++++  LCKA R+  A K        G      +  
Sbjct: 383 ERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYS 442

Query: 291 AVVDGLRHSG 300
            +V+GL  SG
Sbjct: 443 TIVEGLARSG 452



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 151/322 (46%), Gaps = 42/322 (13%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + + G  P  VT+N L+ G  K GR      +L+ +   G  PN ++Y  +++   +  +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 96  YKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD---- 149
           +    E++  M  +G   T D   Y T+++ + K G+++E+ + ++++++ G++ D    
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 150 -------------------------------IVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
                                          ++++NTLI+  C+E  LE A  LL  M  
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G + D  T+  L+DGLCKAG ++ A   LE M   G   ++ AY+  V  L K GK+ +
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN 240

Query: 239 AINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKAVV 293
           A  V E M   D      TY++++  LCK+ ++ +A +++     S G  +       VV
Sbjct: 241 AHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV 300

Query: 294 DGLRHSGCRREAKKIQSKIRMA 315
           DGL   G  +EA+ +   +  A
Sbjct: 301 DGLCKLGRTQEARSVMEAMARA 322



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ ++NGLCK    + A+   R +   G  P  VTY  L+ GLC  GRL  A  +
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERM 385

Query: 68  LKEL----GDSGHAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           ++E+    G   H P ++ TY  ++    +  +    L+    M+ +G   DG  Y T++
Sbjct: 386 VEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIV 445

Query: 123 AAFVKIGRLKEA 134
               + GR  +A
Sbjct: 446 EGLARSGRALQA 457


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 164/317 (51%), Gaps = 7/317 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLR 62
           D+ P   ++N +L GLCK      A  + R +   G    P++VTY+ L+ G CKAG++ 
Sbjct: 40  DIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVE 99

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +R +LKE+   G  P+A+ YT ++    ++ +    LE+L  M R G       + T+I
Sbjct: 100 ESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLI 159

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +   +   L+ A   +++M   GV+ D+V+YNTL++  CK G+L+ A  LL+ M+  G  
Sbjct: 160 SGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCA 219

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D   ++  + GLCK+G +  A   LE M     D N+  YN I+D L K GKID A+ +
Sbjct: 220 PDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEM 279

Query: 243 FESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
            E M   D        YS++V  LCK  R   A  ++ +  ++G R       ++V+GL 
Sbjct: 280 MEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLC 339

Query: 298 HSGCRREAKKIQSKIRM 314
            +G   EA +   ++ M
Sbjct: 340 KAGKIEEAVEAVREMAM 356



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 146/273 (53%), Gaps = 10/273 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++GLCK      A ++   ++  G  P++V Y+  + GLCK+G++  A  +L+++
Sbjct: 189 TYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQM 248

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGR 130
            DS H PN +TY TI+    ++ K    LE++  M    G   +  GY TV+    K+GR
Sbjct: 249 RDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGR 308

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            +EA   ME M   G + D+V+Y++L+N  CK GK+E A   + EM  +G + +  T+  
Sbjct: 309 TQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCS 368

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGF-----DSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           L+ GLC  G +  A   +E M+  G        ++  YN ++  L K G+ID A+  F+ 
Sbjct: 369 LVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  +    D  +YS++V  L ++ R   A  +L
Sbjct: 429 MRSQGCDPDGVSYSTIVEGLARSGRALQAEMIL 461



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 162/323 (50%), Gaps = 10/323 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TFN +++G C+ +  + A  + + +   G   ++VTYN L+ GLCKAGR
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGR 202

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +L+ +  SG AP+ + Y++ +    ++ K     ++L  M+   +  +   Y T
Sbjct: 203 LQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNT 262

Query: 121 VIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++    K G++  A + MEQM + DG  L++V Y+T+++  CK G+ + A  +++ M + 
Sbjct: 263 ILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARA 322

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T++ L++GLCKAG I+ A   +  M   G   N   Y  +V  L   G++  A
Sbjct: 323 GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEA 382

Query: 240 INVFESMEV---------KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
             + E M               TY++++  LCKA R+  A K        G      +  
Sbjct: 383 ERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYS 442

Query: 291 AVVDGLRHSGCRREAKKIQSKIR 313
            +V+GL  SG   +A+ I S++R
Sbjct: 443 TIVEGLARSGRALQAEMILSEVR 465



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 152/324 (46%), Gaps = 46/324 (14%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + + G  P  VT+N L+ G  K GR      +L+ +      PN ++Y  +++   +  +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 96  YKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD---- 149
           +    E++  M  +G   T D   Y T+++ + K G+++E+ + ++++++ G++ D    
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 150 -------------------------------IVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
                                          ++++NTLI+  C+E  LE A  LL +M  
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G + D  T+  L+DGLCKAG ++ A   LE M   G   ++ AY+  V  L K GK+  
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLD 240

Query: 239 AINVFESMEVKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKA 291
           A  V E M  +DS       TY++++  LCK+ ++ +A +++     S G  +       
Sbjct: 241 AHQVLEQM--RDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYST 298

Query: 292 VVDGLRHSGCRREAKKIQSKIRMA 315
           VVDGL   G  +EA+ +   +  A
Sbjct: 299 VVDGLCKLGRTQEARSVMEAMARA 322


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 158/309 (51%), Gaps = 5/309 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   +++ ++NG C        L++ + +Q  G  P L TYN +I  LCK+G++  
Sbjct: 5   GD-APDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+E+ + G  P+ + YTT++    +    +   ++   M+++    D   Y  VI 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + G++ EA     +M + GV+ D V+Y TLI+ YCK G++E A+ L ++M + G   
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+T L DGLCK G +  A   L  M   G   N+  YN +V+ L K G I  A+ + 
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLM 243

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E MEV     D+ T+++++   CK   +  A +LL   L  G++        +++G   S
Sbjct: 244 EEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMS 303

Query: 300 GCRREAKKI 308
           G   + +++
Sbjct: 304 GMLEDGERL 312



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 138/281 (49%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++  LCK+   D+A R+ R +   G VP+ V Y  LI G CK G ++ A 
Sbjct: 41  LKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAY 100

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+      P+ I YT ++    R  K     ++ + M  +G   D   Y T+I  +
Sbjct: 101 KLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGY 160

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +++A     QMV  G+  ++V+Y  L +  CK G+++ A  LL EM  +G + + 
Sbjct: 161 CKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNI 220

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L++GLCK+GNI+ A   +E M   G   +   +  ++D   K G++  A  +   
Sbjct: 221 CTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLRE 280

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M  +       T++ +++  C +  L    +LL   L+ G+
Sbjct: 281 MLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGI 321



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 130/266 (48%), Gaps = 4/266 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P T  +  +++G CK      A ++F  ++K   VP+ + Y  +I GLC+ G+
Sbjct: 71  MINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGK 130

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++   G  P+ +TYTT++    ++ + +    + + M + G T +   Y  
Sbjct: 131 MMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTA 190

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +     K+G++  A + + +M   G+QL+I +YN+L+N  CK G +  A  L++EME  G
Sbjct: 191 LADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAG 250

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T T L+D  CK G +  A   L  M   G    +  +N +++     G ++   
Sbjct: 251 MYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGE 310

Query: 241 NVFESMEVK----DSFTYSSMVHNLC 262
            +   M  K    ++ TY+S++   C
Sbjct: 311 RLLAWMLEKGIMPNTTTYNSLMKQYC 336



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  ++ GLC+      A ++F  +   G  P+ VTY  LI G CK+G +  A 
Sbjct: 111 IVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAF 170

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++  SG  PN +TYT +     +  +     E+L  M  KG   +   Y +++   
Sbjct: 171 SLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGL 230

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +++A   ME+M   G+  D +++ TL++ YCK G++  A+ LL EM  +G +   
Sbjct: 231 CKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTV 290

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  +L++G C +G ++     L +M + G   N   YN ++ +      +     +++ 
Sbjct: 291 ITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKG 350

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     + DS TY+ ++   CKA+ +  A  L     + G  +  S+  +++ G      
Sbjct: 351 MCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKK 410

Query: 302 RREAKKIQSKIR 313
             EA+++  ++R
Sbjct: 411 ISEARELFEEMR 422



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 129/245 (52%), Gaps = 4/245 (1%)

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G AP+ ++Y+T++       + +  L+++  M+ KG   + + Y ++I    K G++ +A
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              + +M+  G+  D V Y TLI+ +CK G ++AAY L DEMEKQ    D   +T +I G
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICG 124

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKD 250
           LC+ G +  A      M   G + +   Y  ++D   K G+++ A ++   M       +
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPN 184

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
             TY+++   LCK  ++ +A++LL      G+++      ++V+GL  SG  R+A K+  
Sbjct: 185 VVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLME 244

Query: 311 KIRMA 315
           ++ +A
Sbjct: 245 EMEVA 249



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+  + +GLCK    D A  +   +   G    + TYN L+ GLCK+G 
Sbjct: 176 MVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGN 235

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A  +++E+  +G  P+ IT+TT+M    +  +     E+L  M  +G       +  
Sbjct: 236 IRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNV 295

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   G L++    +  M+  G+  +  +YN+L+  YC    +     +   M  +G
Sbjct: 296 LMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARG 355

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+ ILI G CKA N+K A    + M + GF+    +YN I+    K  KI  A 
Sbjct: 356 VMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEAR 415

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
            +FE M  ++     + ++NL
Sbjct: 416 ELFEEMR-REGMAADAEIYNL 435



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 4/195 (2%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           MK +G   D   Y TVI  +   G L++    +++M   G++ ++ +YN++I L CK GK
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           ++ A  +L EM  QG   D   +T LIDG CK GNI+ A    + M K     +  AY  
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 226 IVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++  L + GK+  A  VF  M  +    D  TY++++   CK+  +  A  L    ++SG
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG 180

Query: 282 VRILKSAQKAVVDGL 296
           +        A+ DGL
Sbjct: 181 LTPNVVTYTALADGL 195



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 113/231 (48%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++NGLCK+     A+++   ++  G  P+ +T+  L+   CK G +  A  +L+E+
Sbjct: 222 TYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREM 281

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  P  IT+  +M     +   + G  +L+ M  KG   +   Y +++  +     +
Sbjct: 282 LDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNM 341

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +  T+  + M   GV  D  +YN LI  +CK   ++ A+ L  EM ++GF     ++  +
Sbjct: 342 RCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSI 401

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           I G  K   I  AR   E M + G  ++ E YN  VD    +G ++ A+ +
Sbjct: 402 IKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALEL 452



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 12/227 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  +++  CK      A  + R +   G  P ++T+N+L+ G C +G L     +
Sbjct: 253 PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERL 312

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L  + + G  PN  TY ++MK  C RN   +   EI   M  +G   D   Y  +I    
Sbjct: 313 LAWMLEKGIMPNTTTYNSLMKQYCIRN-NMRCTTEIYKGMCARGVMPDSNTYNILIKGHC 371

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K   +KEA    ++M   G  L   SYN++I  + K+ K+  A  L +EM ++G   D  
Sbjct: 372 KARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAE 431

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            + + +D     GN++ A L L        D  +E  NC ++R+ K+
Sbjct: 432 IYNLFVDISYGEGNMETA-LEL-------CDEAIE--NCFLNRIKKE 468



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 81/170 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN+++NG C +   ++  R+   + + G +P   TYN L+K  C    +R   
Sbjct: 286 LQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTT 345

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I K +   G  P++ TY  ++K   + R  K    +   M  KG+      Y ++I  F
Sbjct: 346 EIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGF 405

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            K  ++ EA +  E+M  +G+  D   YN  +++   EG +E A  L DE
Sbjct: 406 FKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDE 455


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 39/340 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN+++NGL K  +  +AL +   + + GF P++ TYN LI GLCK G +  A  +
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 68  LKELGDSGHAPNAITYTTIMK---------------------------CCFRN------- 93
           L ++ +   +PN +TY TI+                            C + +       
Sbjct: 359 LNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCL 418

Query: 94  -RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
            R + + +E+   MK KG   D F Y  +I +    G+L+EA + +++M   G   ++++
Sbjct: 419 SRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVIT 478

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YNTLI+ +CK  ++  A  + D+ME QG   +  T+  LIDGLCK+  ++ A   ++ M 
Sbjct: 479 YNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMI 538

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLP 268
             G   +   YN ++    K G I  A ++ ++M       D  TY +++  LCKA R+ 
Sbjct: 539 MEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVE 598

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +A+KLL +    G+ +   A   V+  L      +EA ++
Sbjct: 599 AATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRL 638



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 141/262 (53%), Gaps = 4/262 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++ GLC +R    A+ +++ ++  G  P+  TYN+LI  LC  G+L+ A 
Sbjct: 402 ILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEAL 461

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKE+  SG A N ITY T++    +N++     EI   M+ +G + +   Y T+I   
Sbjct: 462 NLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGL 521

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R++EA+  M+QM+ +G++ D  +YN+L+  +CK G ++ A  ++  M   G E D 
Sbjct: 522 CKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDI 581

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI GLCKAG ++ A   L  +   G +    AYN ++  L +  +   A+ +F  
Sbjct: 582 VTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFRE 641

Query: 246 M----EVKDSFTYSSMVHNLCK 263
           M    E  D+ TY  +   LC+
Sbjct: 642 MIEKAEAPDAVTYKIVFRGLCQ 663



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 6/305 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D +P T T+N +++ LCK    + A ++   L   G +P++ TYN LI+GLC +  
Sbjct: 362 MIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRN 421

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
              A  + KE+   G  P+  TY  ++   CFR  K +  L +L  M+  G   +   Y 
Sbjct: 422 HTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRG-KLQEALNLLKEMEVSGCARNVITYN 480

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I  F K  R+ EA +  +QM   GV  + V+YNTLI+  CK  ++E A  L+D+M  +
Sbjct: 481 TLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIME 540

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   DK+T+  L+   CKAG+IK A   ++ M   G + ++  Y  ++  L K G+++ A
Sbjct: 541 GLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAA 600

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +  ++++K        Y+ ++  L + KR   A +L    ++          K V  G
Sbjct: 601 TKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRG 660

Query: 296 LRHSG 300
           L   G
Sbjct: 661 LCQGG 665



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 141/270 (52%), Gaps = 5/270 (1%)

Query: 19  GLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           G CK    + ALR    +  + GF P+  T+N+L+ GL K G ++ A  ++  +   G  
Sbjct: 274 GFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFD 333

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P+  TY +++    +  +    +++L+ M  +  + +   Y T+I+   K  +++EAT  
Sbjct: 334 PDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKL 393

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
              +   G+  D+ +YN+LI   C       A  L  EM+ +G   D++T+ +LID LC 
Sbjct: 394 ALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCF 453

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFT 253
            G ++ A   L+ M   G   N+  YN ++D   K+ +I  A  +F+ ME+    ++S T
Sbjct: 454 RGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT 513

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           Y++++  LCK++R+  AS+L+   +  G+R
Sbjct: 514 YNTLIDGLCKSERVEEASQLMDQMIMEGLR 543



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 137/304 (45%), Gaps = 7/304 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +L+ L +   +   + +F    K   F P    +  ++  L KAG     + ILKE+  S
Sbjct: 59  LLHSLRREEDSSAVIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKIS 118

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKE 133
               +  +    ++       Y   L+ + AM+ + G   +   Y  ++   V   +LK 
Sbjct: 119 LSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKL 178

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
                  MV+ G++ D+ ++N LI   C+  ++  A LL++EME  G   D+ T T ++ 
Sbjct: 179 VEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQ 238

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           G  + GN+ GA    E M + G        N +V+   K+G+I+ A+   E M ++    
Sbjct: 239 GFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFF 298

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D +T++ +V+ L K   +  A +++   L+ G         +++ GL   G   EA K+
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 309 QSKI 312
            +++
Sbjct: 359 LNQM 362


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 167/318 (52%), Gaps = 5/318 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++ G+CK    D AL   R L   G  P++V+YNIL++      R     
Sbjct: 232 LRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGE 291

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++K++  SG  PN +T++ ++    R  + +  + +L  MK KG T D + Y  +I+AF
Sbjct: 292 RLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAF 351

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRL  A +Y+E+MV+DG   DIV+YNT++   CK G  + A  + +++++ G     
Sbjct: 352 CKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTV 411

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  +   L   GN   A   +  M + G D +   YN ++  L +DG +D AI +   
Sbjct: 412 RAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVD 471

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME         +++ ++  +CKA R+    +LL++ ++ G    +++   +++G+ ++G 
Sbjct: 472 MEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGW 531

Query: 302 RREAKKIQSKI-RMAKIS 318
           R EA ++ + + R+  IS
Sbjct: 532 RAEAMELANSLYRLGVIS 549



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 4/260 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N M++G  K    D+A ++F  ++  GF P++VTYNI+I  LC  G+L  A  +
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + EL   G  P+ ITYT +++      +    LE+   +  +G   D + Y  +I    K
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A D++  +   G   D+VSYN L+  +  + + E    L+ +M   G E +  T
Sbjct: 249 EGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVT 308

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           H+ILI   C+ G ++ A   LE M + G   +  +Y+ ++    K+G++D AI   E M 
Sbjct: 309 HSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMV 368

Query: 248 ----VKDSFTYSSMVHNLCK 263
               + D   Y++++  LCK
Sbjct: 369 SDGCLPDIVNYNTILATLCK 388



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 40/305 (13%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +LN  C+    + +L     +   GF P++V    LIKG   +  L+ A  +++ L   G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+  +Y  ++    +  +     ++   M+ +G++ D   Y  +I +    G+L+ A 
Sbjct: 128 D-PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAF 186

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + M++++ DG +  +++Y  LI     EG++  A  L DE+  +G   D YT+  +I G+
Sbjct: 187 EVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGI 246

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV------------DRLGKD---------- 233
           CK G    A   + +++  G + ++ +YN ++            +RL KD          
Sbjct: 247 CKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNV 306

Query: 234 -------------GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLS 276
                        G++  A+NV E M+ K    DS++Y  ++   CK  RL  A + L  
Sbjct: 307 VTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEK 366

Query: 277 CLKSG 281
            +  G
Sbjct: 367 MVSDG 371



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 5/132 (3%)

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L+N  C+ GK   +   L+ +  +GF+ D    T LI G   + N+K A   +E +   G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
            D ++ +YN ++    K  +ID A  VF+ M  +    D  TY+ M+ +LC   +L  A 
Sbjct: 128 -DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAF 186

Query: 272 KLLLSCLKSGVR 283
           +++   LK G +
Sbjct: 187 EVMDELLKDGCK 198


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 162/313 (51%), Gaps = 4/313 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P   TFN M+NGLCK    + A ++F  + + G  P++V+YN L+ G CK G L  
Sbjct: 75  GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 134

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           +  +  E+   G  P+ +T+T+++    +    +  + +++ M+ +G   +   +  +I 
Sbjct: 135 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 194

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F K G L +A   +E+M   G+Q  +V YN LIN YCK G+++ A  L+ EME +  + 
Sbjct: 195 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 254

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T++ +I G CK GN+  A    + M K G   +   Y+ ++  L ++ +++ A  +F
Sbjct: 255 DVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 314

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E+M       D FTY++++   CK   +  A  L    ++ GV         +++GL  S
Sbjct: 315 ENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 374

Query: 300 GCRREAKKIQSKI 312
              +EA ++  K+
Sbjct: 375 ARTKEAHRLLFKL 387



 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 149/287 (51%), Gaps = 5/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI++  LC     + A+ +   ++  G  P  VTYN L+   C+AG 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 61  LRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A  ++  + + G+A PN +T+ +++    +  + +   ++   M R+G   D   Y 
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+++ + K+G L E+     +M   G+  D+V++ +LI+  CK G LE A  L+ +M ++
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   ++ T T LIDG CK G +  A L +E M K G   ++  YN +++   K G++D A
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             +   ME K    D  TYS+++   CK   L SA +L    LK GV
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGV 287



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 145/279 (51%), Gaps = 4/279 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   ++N +L+G CK      +L +F  + + G VP++VT+  LI   CKAG 
Sbjct: 107 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 166

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++ ++ + G   N +T+T ++    +       L  +  M++ G       Y  
Sbjct: 167 LEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 226

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K+GR+  A + + +M    V+ D+V+Y+T+I+ YCK G L++A+ L  +M K+G
Sbjct: 227 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 286

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ LI GLC+   +  A    E M ++G   +   Y  ++D   K+G ++ A+
Sbjct: 287 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 346

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLL 275
           ++ + M     + D  TYS +++ L K+ R   A +LL 
Sbjct: 347 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 385



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 19/313 (6%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF  +++G CK  + D+AL     ++K G  P +V YN LI G CK GR+  AR +++E+
Sbjct: 188 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 247

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P+ +TY+TI+    +        ++   M +KG   D   Y ++I    +  RL
Sbjct: 248 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 307

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +  E M+  GVQ D  +Y TLI+ +CKEG +E A  L DEM ++G   D  T+++L
Sbjct: 308 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 367

Query: 192 IDGLCKAGNIKGA-RLHLEYMNKIGFDSNLE-----------AYNCIVDRLGK---DGKI 236
           I+GL K+   K A RL  +  ++     N++            +  +V  L      G +
Sbjct: 368 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLM 427

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A  V++SM  +    D   YS ++H  C+   +  A       L+SG     ++  ++
Sbjct: 428 KEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISL 487

Query: 293 VDGLRHSGCRREA 305
           V GL   G   EA
Sbjct: 488 VRGLFEEGMVVEA 500



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 15/254 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G CK    D+A ++ + + K G +P+ +TY+ LI+GLC+  RL  A  +
Sbjct: 254 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 313

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +   G  P+  TYTT++    +    +  L +   M RKG   D   Y  +I    K
Sbjct: 314 FENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 373

Query: 128 IGRLKEATD-----YMEQMVTDGVQLDIV----------SYNTLINLYCKEGKLEAAYLL 172
             R KEA       Y E  V D ++ D +          S   L+  +C +G ++ A  +
Sbjct: 374 SARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKV 433

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
              M  + ++ D   ++ILI G C+ GN++ A    + M + GF  N  +   +V  L +
Sbjct: 434 YQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFE 493

Query: 233 DGKIDHAINVFESM 246
           +G +  A N  + +
Sbjct: 494 EGMVVEADNAIQDL 507



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 5/200 (2%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M R G   + + Y  ++ A    GRL+EA   +  M   G   + V+YNTL+  +C+ G+
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 166 LEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           L+ A  ++  M ++G  + +  T   +++GLCKAG ++GAR   + M + G   ++ +YN
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++    K G +  ++ VF  M     V D  T++S++H  CKA  L  A  L+    + 
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 281 GVRILKSAQKAVVDGLRHSG 300
           G+R+ +    A++DG    G
Sbjct: 181 GLRMNEVTFTALIDGFCKKG 200



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 117/264 (44%), Gaps = 16/264 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ ++ GLC+ +  ++A  +F  + + G  P+  TY  LI G CK G +  A  +
Sbjct: 289 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 348

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-----CTVI 122
             E+   G  P+ +TY+ ++    ++ + K    +L  +  +    D   Y     C   
Sbjct: 349 HDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 408

Query: 123 AAFVKI----------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
           A F  +          G +KEA    + M+    +LD   Y+ LI+ +C+ G +  A   
Sbjct: 409 AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSF 468

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
             +M + GF  +  +   L+ GL + G +  A   ++ +      ++ EA   ++D   K
Sbjct: 469 HKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRK 528

Query: 233 DGKIDHAINVFESMEVKDSFTYSS 256
           +G +D  I+V   M  +D    SS
Sbjct: 529 EGNVDALIDVLCGM-ARDGLLPSS 551



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 15/196 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL--------- 51
           MI   + P   T+++++NGL K+  T  A R+   L     VP+ + Y+ L         
Sbjct: 352 MIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEF 411

Query: 52  ------IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
                 +KG C  G ++ A  + + + D     +   Y+ ++    R    +  L     
Sbjct: 412 KSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 471

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M R G++ +     +++    + G + EA + ++ ++T     D  +   LI+L  KEG 
Sbjct: 472 MLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGN 531

Query: 166 LEAAYLLLDEMEKQGF 181
           ++A   +L  M + G 
Sbjct: 532 VDALIDVLCGMARDGL 547


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 153/313 (48%), Gaps = 10/313 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T NI+LN LC        L +  G+ + G++P++VTY  LIKGLC   R+  A 
Sbjct: 127 ISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAA 186

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL----EILSAMKRKGYTFDG--FGYC 119
            +   +   G  PNAITY T+MK   R     + L    E+L+     G  F      Y 
Sbjct: 187 LLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYS 246

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I A  K  R  EA D  E+M   G+   ++SY +LI+ +C  GK E A  L +EM  Q
Sbjct: 247 IIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQ 306

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + +  T  +LID LCK G +  A+  LE M + G   NL  YN +++     G ++ A
Sbjct: 307 GVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSA 366

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F SM  K    D   Y+ +++  CK  ++  A KL    L+ G R       A++ G
Sbjct: 367 RELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTG 426

Query: 296 LRHSGCRREAKKI 308
           L   G   +AKK+
Sbjct: 427 LFQGGKVGDAKKL 439



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 153/349 (43%), Gaps = 45/349 (12%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +  P   +++I+++ LCK+R  D A  +F  ++  G  P +++Y  LI G C  G+   A
Sbjct: 237 NFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEA 296

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +  E+ + G  PN +T+  ++    +  K     ++L  M ++G   +   Y ++I  
Sbjct: 297 KRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEG 356

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------ 178
           F  +G L  A +    M + G + D++ Y  LIN YCK  K+E A  L + M +      
Sbjct: 357 FCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPD 416

Query: 179 -----------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
                                         G   D Y + I ++GLCK G +  A     
Sbjct: 417 VKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFN 476

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            +       ++E +NC++D L K GK++ A  +FE +  +    D  TY+ M+H  C+  
Sbjct: 477 KLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGG 536

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           ++  A+ L     K+G    K     ++ G        E+KK++  + +
Sbjct: 537 QVVKANILFQKMEKNGCTPDKITYATLIRGF------FESKKLEKVVEL 579



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 145/309 (46%), Gaps = 13/309 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN++++ LCK      A  +   + + G VP L+TYN LI+G C  G 
Sbjct: 303 MVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGD 362

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +AR +   +   G  P+ I YT ++    +  K +  +++ + M + G   D   Y  
Sbjct: 363 LNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGA 422

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G++ +A      M   G+  D+  Y   +N  CK G L  A  L ++++   
Sbjct: 423 LLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYN 482

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D      LIDGLCKAG ++ A    E + +     ++  YN ++    + G++  A 
Sbjct: 483 IKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKAN 542

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F+ ME      D  TY++++    ++K+L    +LL   ++  V +        V+ L
Sbjct: 543 ILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSL-------DVNIL 595

Query: 297 RHSGCRREA 305
           RH+  RR A
Sbjct: 596 RHN--RRHA 602



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 128/331 (38%), Gaps = 45/331 (13%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           N     A + F  +      P L ++  L+ GL K        ++  ++  SG +P+  T
Sbjct: 74  NITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCT 133

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
              ++ C     +   GL +++ + R+GY  D   Y T+I       R+ +A     +M 
Sbjct: 134 LNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQ 193

Query: 143 TDGVQLDIVSYNTL-----------------------------------------INLYC 161
             G   + ++Y TL                                         I+  C
Sbjct: 194 KLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALC 253

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K+ + + A  L +EM+ QG      ++T LI G C  G  + A+     M   G   N+ 
Sbjct: 254 KDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVV 313

Query: 222 AYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            +N ++D L K+GK+  A ++ E M     V +  TY+S++   C    L SA +L +S 
Sbjct: 314 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSM 373

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              G          +++G   +    EA K+
Sbjct: 374 PSKGCEPDVICYTVLINGYCKTSKVEEAMKL 404


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 164/312 (52%), Gaps = 9/312 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   T+N+++NGLCK R T  A  + + ++      P+LVTY+ +I G CK G +  A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 65  RWILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             IL+E+    G AP+ +TYT+++    R+ K     E++  MK KG   D F +  +I 
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---G 180
            +    ++ EA    ++++T   +LD VS + LI   C+E ++  AY L  EME +    
Sbjct: 125 GWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGA 184

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           ++ D  T+T LIDG CK+GN++ A   L  M       N+  Y+ ++  L K G +D A+
Sbjct: 185 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 244

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M     V +  TY++++H LC A ++ +A  L+     +       +  A++DG 
Sbjct: 245 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGY 304

Query: 297 RHSGCRREAKKI 308
              G   EAK++
Sbjct: 305 CRLGRIEEAKQL 316



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 1/306 (0%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   T+  +++G CK+   + A++M   ++    VP +VTY+ L+ GLCKAG L  
Sbjct: 183 GAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQ 242

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + + +   G  PN +TYTT++       K      ++  M       D   Y  ++ 
Sbjct: 243 ALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLD 302

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-KQGFE 182
            + ++GR++EA    ++M       D ++Y  L+  +C   +LE A  LL+ M+   G +
Sbjct: 303 GYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T++I++ G  +A     A   ++ M       N   Y+ ++D L K G+++HA+ V
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            ++++  D  TY+ ++  LC   R   A  LL   +   V        +V+  L   G  
Sbjct: 423 LKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDM 482

Query: 303 REAKKI 308
            EA K+
Sbjct: 483 DEAWKL 488



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 132/275 (48%), Gaps = 8/275 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKH---GFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ GLC+ R    A  +F+ ++      + P++VTY  LI G CK+G L  A  +L  + 
Sbjct: 157 LITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVME 216

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                PN +TY++++    +       L++   M  KG   +   Y T+I       ++ 
Sbjct: 217 GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVD 276

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A   M++M       D VSYN L++ YC+ G++E A  L  EM  +    D+ T+T L+
Sbjct: 277 AARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLV 336

Query: 193 DGLCKAGNIKGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
            G C A  ++ AR  LE M    G D ++  Y+ +V    +  +   A    + M  +  
Sbjct: 337 RGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNV 396

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             ++ TYSS++  LCKA R+  A ++L +  K  V
Sbjct: 397 APNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDV 431



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 153/319 (47%), Gaps = 20/319 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +L+GLCK    D AL +FR +   G VP +VTY  LI GLC A ++  AR +
Sbjct: 222 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 281

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+  +    + ++Y  ++    R  + +   ++   M  K    D   Y  ++  F  
Sbjct: 282 MDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCN 341

Query: 128 IGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             RL+EA   +E M T  G+  D+V+Y+ ++  Y +  +   A   + EM  +    +  
Sbjct: 342 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAV 401

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LIDGLCKAG +  A   L+ ++K     ++  Y  +++ L    + + A+ + E M
Sbjct: 402 TYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEM 457

Query: 247 ---EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG-- 300
               V+ S  T++S++  LC+   +  A KLL++    G+         +++G   +G  
Sbjct: 458 VNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRM 517

Query: 301 ---------CRREAKKIQS 310
                     RR+AKK  S
Sbjct: 518 EIAYELFEVMRRKAKKSSS 536



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 155/318 (48%), Gaps = 22/318 (6%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T ++N +L+G C+    + A ++F+ +     +P+ +TY  L++G C A RL  AR++L+
Sbjct: 294 TVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLE 353

Query: 70  ELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
            +  + G  P+ +TY+ ++    R +++    E +  M  +    +   Y ++I    K 
Sbjct: 354 NMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKA 413

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           GR+  A + ++ +     + D+V+Y  +I   C   + E A  LL+EM  +  E    T 
Sbjct: 414 GRVNHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTF 469

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
             +I  LC+ G++  A   L  M   G +  +  Y  +++   + G+++ A  +FE M  
Sbjct: 470 NSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRR 529

Query: 249 K-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK---AVVD 294
           K               +S+++  LCKA+ +  A  ++   L+S  R  + A++   A+VD
Sbjct: 530 KAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEE-LRS--RECEPAEEDCLAIVD 586

Query: 295 GLRHSGCRREAKKIQSKI 312
           GL  +G   EA K+ + I
Sbjct: 587 GLLRAGRTEEAGKLINSI 604



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 144/303 (47%), Gaps = 8/303 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF+ ++ G C  R  D AL++++ +       + V+ + LI GLC+  R+  A 
Sbjct: 112 VEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAY 171

Query: 66  WILKELG---DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            + +E+    D    P+ +TYT ++    ++   +  +++L  M+ +    +   Y +++
Sbjct: 172 ELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLL 231

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K G L +A D   +M + G   ++V+Y TLI+  C   K++AA LL+DEM      
Sbjct: 232 HGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCP 291

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  ++  L+DG C+ G I+ A+   + M       +   Y C+V       +++ A  +
Sbjct: 292 ADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFL 351

Query: 243 FESMEV-----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
            E+M+       D  TYS +V    +AKR   A++ +   +   V        +++DGL 
Sbjct: 352 LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 411

Query: 298 HSG 300
            +G
Sbjct: 412 KAG 414



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 11/248 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++I++ G  + +    A    + +      P  VTY+ LI GLCKAGR+  A 
Sbjct: 361 IDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAM 420

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK +      P+ +TYT +++      + +  L +L  M  K        + +VI A 
Sbjct: 421 EVLKNV----DKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGAL 476

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++G + EA   +  M   G++  +V+Y TL+  + + G++E AY L + M ++  +   
Sbjct: 477 CRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSS 536

Query: 186 YTHTI-------LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
             + +       LI GLCKA  I  A   +E +     +   E    IVD L + G+ + 
Sbjct: 537 AANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEE 596

Query: 239 AINVFESM 246
           A  +  S+
Sbjct: 597 AGKLINSI 604



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 109/223 (48%), Gaps = 11/223 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   T++ +++GLCK    ++A+ + + + K    P++VTY I+I+GLC   R
Sbjct: 391 MIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDR 446

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L+E+ +    P+  T+ +++    R        ++L AM   G       Y T
Sbjct: 447 TEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTT 506

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQ-------LDIVSYNTLINLYCKEGKLEAAYLLL 173
           ++  F + GR++ A +  E M     +       +   +++ LI   CK  +++ A  ++
Sbjct: 507 LLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVV 566

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           +E+  +  E  +     ++DGL +AG  + A   +  ++K+G 
Sbjct: 567 EELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 162/313 (51%), Gaps = 4/313 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P   TFN M+NGLCK    + A ++F  + + G  P++V+YN L+ G CK G L  
Sbjct: 217 GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           +  +  E+   G  P+ +T+T+++    +    +  + +++ M+ +G   +   +  +I 
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F K G L +A   +E+M   G+Q  +V YN LIN YCK G+++ A  L+ EME +  + 
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 396

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T++ +I G CK GN+  A    + M K G   +   Y+ ++  L ++ +++ A  +F
Sbjct: 397 DVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 456

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E+M       D FTY++++   CK   +  A  L    ++ GV         +++GL  S
Sbjct: 457 ENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 516

Query: 300 GCRREAKKIQSKI 312
              +EA ++  K+
Sbjct: 517 ARTKEAHRLLFKL 529



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 147/282 (52%), Gaps = 5/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI++  LC     + A+ +   ++  G  P  VTYN L+   C+AG L  A 
Sbjct: 148 VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 207

Query: 66  WILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++  + + G+A PN +T+ +++    +  + +   ++   M R+G   D   Y T+++ 
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K+G L E+     +M   G+  D+V++ +LI+  CK G LE A  L+ +M ++G   +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           + T T LIDG CK G +  A L +E M K G   ++  YN +++   K G++D A  +  
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            ME K    D  TYS+++   CK   L SA +L    LK GV
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGV 429



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 145/279 (51%), Gaps = 4/279 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   ++N +L+G CK      +L +F  + + G VP++VT+  LI   CKAG 
Sbjct: 249 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 308

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++ ++ + G   N +T+T ++    +       L  +  M++ G       Y  
Sbjct: 309 LEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 368

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K+GR+  A + + +M    V+ D+V+Y+T+I+ YCK G L++A+ L  +M K+G
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ LI GLC+   +  A    E M ++G   +   Y  ++D   K+G ++ A+
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLL 275
           ++ + M     + D  TYS +++ L K+ R   A +LL 
Sbjct: 489 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 19/313 (6%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF  +++G CK  + D+AL     ++K G  P +V YN LI G CK GR+  AR +++E+
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 389

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P+ +TY+TI+    +        ++   M +KG   D   Y ++I    +  RL
Sbjct: 390 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +  E M+  GVQ D  +Y TLI+ +CKEG +E A  L DEM ++G   D  T+++L
Sbjct: 450 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 509

Query: 192 IDGLCKAGNIKGA-RLHLEYMNKIGFDSNLE-----------AYNCIVDRLG---KDGKI 236
           I+GL K+   K A RL  +  ++     N++            +  +V  L      G +
Sbjct: 510 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLM 569

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A  V++SM  +    D   YS ++H  C+   +  A       L+SG     ++  ++
Sbjct: 570 KEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISL 629

Query: 293 VDGLRHSGCRREA 305
           V GL   G   EA
Sbjct: 630 VRGLFEEGMVVEA 642



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G+AP+   Y  ++     +         LS+M R G   + + Y  ++ A    GRL+EA
Sbjct: 113 GYAPSVPAYNAVL-LALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILID 193
              +  M   G   + V+YNTL+  +C+ G+L+ A  ++  M ++G  + +  T   +++
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           GLCKAG ++GAR   + M + G   ++ +YN ++    K G +  ++ VF  M     V 
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           D  T++S++H  CKA  L  A  L+    + G+R+ +    A++DG 
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 15/254 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G CK    D+A ++ + + K G +P+ +TY+ LI+GLC+  RL  A  +
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 455

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +   G  P+  TYTT++    +    +  L +   M RKG   D   Y  +I    K
Sbjct: 456 FENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 515

Query: 128 IGRLKEATD-----YMEQMVTDGVQLDIV----------SYNTLINLYCKEGKLEAAYLL 172
             R KEA       Y E  V D ++ D +          S   L+  +C +G ++ A  +
Sbjct: 516 SARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKV 575

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
              M  + ++ D   ++ILI G C+ GN++ A    + M + GF  N  +   +V  L +
Sbjct: 576 YQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFE 635

Query: 233 DGKIDHAINVFESM 246
           +G +  A N  + +
Sbjct: 636 EGMVVEADNAIQDL 649



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 107/242 (44%), Gaps = 15/242 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ ++ GLC+ +  ++A  +F  + + G  P+  TY  LI G CK G +  A  +
Sbjct: 431 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-----CTVI 122
             E+   G  P+ +TY+ ++    ++ + K    +L  +  +    D   Y     C   
Sbjct: 491 HDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 550

Query: 123 AAFVKI----------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
           A F  +          G +KEA    + M+    +LD   Y+ LI+ +C+ G +  A   
Sbjct: 551 AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSF 610

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
             +M + GF  +  +   L+ GL + G +  A   ++ +      ++ EA   ++D   K
Sbjct: 611 HKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRK 670

Query: 233 DG 234
           +G
Sbjct: 671 EG 672


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 162/313 (51%), Gaps = 4/313 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P   TFN M+NGLCK    + A ++F  + + G  P++V+YN L+ G CK G L  
Sbjct: 217 GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           +  +  E+   G  P+ +T+T+++    +    +  + +++ M+ +G   +   +  +I 
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F K G L +A   +E+M   G+Q  +V YN LIN YCK G+++ A  L+ EME +  + 
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 396

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T++ +I G CK GN+  A    + M K G   +   Y+ ++  L ++ +++ A  +F
Sbjct: 397 DVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 456

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E+M       D FTY++++   CK   +  A  L    ++ GV         +++GL  S
Sbjct: 457 ENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 516

Query: 300 GCRREAKKIQSKI 312
              +EA ++  K+
Sbjct: 517 ARTKEAHRLLFKL 529



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 147/282 (52%), Gaps = 5/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI++  LC     + A+ +   ++  G  P  VTYN L+   C+AG L  A 
Sbjct: 148 VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 207

Query: 66  WILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++  + + G+A PN +T+ +++    +  + +   ++   M R+G   D   Y T+++ 
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K+G L E+     +M   G+  D+V++ +LI+  CK G LE A  L+ +M ++G   +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           + T T LIDG CK G +  A L +E M K G   ++  YN +++   K G++D A  +  
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            ME K    D  TYS+++   CK   L SA +L    LK GV
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGV 429



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 145/279 (51%), Gaps = 4/279 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   ++N +L+G CK      +L +F  + + G VP++VT+  LI   CKAG 
Sbjct: 249 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 308

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++ ++ + G   N +T+T ++    +       L  +  M++ G       Y  
Sbjct: 309 LEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 368

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K+GR+  A + + +M    V+ D+V+Y+T+I+ YCK G L++A+ L  +M K+G
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ LI GLC+   +  A    E M ++G   +   Y  ++D   K+G ++ A+
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLL 275
           ++ + M     + D  TYS +++ L K+ R   A +LL 
Sbjct: 489 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 19/313 (6%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF  +++G CK  + D+AL     ++K G  P +V YN LI G CK GR+  AR +++E+
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 389

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P+ +TY+TI+    +        ++   M +KG   D   Y ++I    +  RL
Sbjct: 390 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +  E M+  GVQ D  +Y TLI+ +CKEG +E A  L DEM ++G   D  T+++L
Sbjct: 450 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 509

Query: 192 IDGLCKAGNIKGA-RLHLEYMNKIGFDSNLE-----------AYNCIVDRLG---KDGKI 236
           I+GL K+   K A RL  +  ++     N++            +  +V  L      G +
Sbjct: 510 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLM 569

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A  V++SM  +    D   YS ++H  C+   +  A       L+SG     ++  ++
Sbjct: 570 KEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISL 629

Query: 293 VDGLRHSGCRREA 305
           V GL   G   EA
Sbjct: 630 VRGLFEEGMVVEA 642



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G+AP+   Y  ++     +         LS+M R G   + + Y  ++ A    GRL+EA
Sbjct: 113 GYAPSVPAYNAVL-LALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILID 193
              +  M   G   + V+YNTL+  +C+ G+L+ A  ++  M ++G  + +  T   +++
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           GLCKAG ++GAR   + M + G   ++ +YN ++    K G +  ++ VF  M     V 
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           D  T++S++H  CKA  L  A  L+    + G+R+ +    A++DG 
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 15/254 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G CK    D+A ++ + + K G +P+ +TY+ LI+GLC+  RL  A  +
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 455

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +   G  P+  TYTT++    +    +  L +   M RKG   D   Y  +I    K
Sbjct: 456 FENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 515

Query: 128 IGRLKEATD-----YMEQMVTDGVQLDIV----------SYNTLINLYCKEGKLEAAYLL 172
             R KEA       Y E  V D ++ D +          S   L+  +C +G ++ A  +
Sbjct: 516 SARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKV 575

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
              M  + ++ D   ++ILI G C+ GN++ A    + M + GF  N  +   +V  L +
Sbjct: 576 YQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFE 635

Query: 233 DGKIDHAINVFESM 246
           +G +  A N  + +
Sbjct: 636 EGMVVEADNAIQDL 649



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 117/264 (44%), Gaps = 16/264 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ ++ GLC+ +  ++A  +F  + + G  P+  TY  LI G CK G +  A  +
Sbjct: 431 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-----CTVI 122
             E+   G  P+ +TY+ ++    ++ + K    +L  +  +    D   Y     C   
Sbjct: 491 HDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 550

Query: 123 AAFVKI----------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
           A F  +          G +KEA    + M+    +LD   Y+ LI+ +C+ G +  A   
Sbjct: 551 AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSF 610

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
             +M + GF  +  +   L+ GL + G +  A   ++ +      ++ EA   ++D   K
Sbjct: 611 HKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRK 670

Query: 233 DGKIDHAINVFESMEVKDSFTYSS 256
           +G +D  I+V   M  +D    SS
Sbjct: 671 EGNVDALIDVLCGM-ARDGLLPSS 693



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 15/196 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL--------- 51
           MI   + P   T+++++NGL K+  T  A R+   L     VP+ + Y+ L         
Sbjct: 494 MIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEF 553

Query: 52  ------IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
                 +KG C  G ++ A  + + + D     +   Y+ ++    R    +  L     
Sbjct: 554 KSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 613

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M R G++ +     +++    + G + EA + ++ ++T     D  +   LI+L  KEG 
Sbjct: 614 MLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGN 673

Query: 166 LEAAYLLLDEMEKQGF 181
           ++A   +L  M + G 
Sbjct: 674 VDALIDVLCGMARDGL 689


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 144/267 (53%), Gaps = 2/267 (0%)

Query: 2   ICGD-LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +CG  L P   TF ++++G CK    D AL+ F+ +   G  P+LVTYN LI GLCK G 
Sbjct: 238 MCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGD 297

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ AR ++ E+  SG  P+ IT+TT++  C +    +  LEI   M  +G   D   +  
Sbjct: 298 LKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTV 357

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR+ +A   +  M++ G + D  +Y  +++ +CK+G +   + LL EM+  G
Sbjct: 358 LISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDG 417

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHA 239
                 T+  L++GLCK G +K A++ L+ M  +G   N   YN +++   K G  +D  
Sbjct: 418 HVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVDVD 477

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAKR 266
           I   E   VKD  +Y+++V+   K  +
Sbjct: 478 IFNSEKGLVKDYASYTALVNESSKTSK 504



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN +++G CK    +   R+   ++     P++ T++ LI GLCK GRL    
Sbjct: 173 LRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGS 232

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+T ++    +  K  L L+    M  +G   D   Y  +I   
Sbjct: 233 LLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G LKEA   + +M   G++ D +++ TLI+  CK G +E+A  +   M ++G E D 
Sbjct: 293 CKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDD 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T+LI GLC+ G +  A   L  M   GF  +   Y  +VD   K G +     + + 
Sbjct: 353 VAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKE 412

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M+    V    TY+++++ LCK  ++ +A  LL + L  GV
Sbjct: 413 MQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGV 453



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 125/260 (48%), Gaps = 6/260 (2%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+ P    +N+L+ G CK G + +AR +  E+   G  P  +++ T++  C +    + G
Sbjct: 137 GYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEG 196

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             +   M+ +    D F +  +I    K GRL E +   ++M   G+  + V++  LI+ 
Sbjct: 197 FRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDG 256

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CK GK++ A      M  QG   D  T+  LI+GLCK G++K AR  +  M+  G   +
Sbjct: 257 QCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPD 316

Query: 220 LEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
              +  ++D   K G ++ A+      V E +E+ D   ++ ++  LC+  R+  A ++L
Sbjct: 317 RITFTTLIDGCCKYGDMESALEIKRRMVEEGIEL-DDVAFTVLISGLCRDGRVHDAERML 375

Query: 275 LSCLKSGVRILKSAQKAVVD 294
              L +G +        VVD
Sbjct: 376 RDMLSAGFKPDDPTYTMVVD 395



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 8/223 (3%)

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           R +   LE+L +    GY  + F +  ++  F K+G +  A    +++   G++  +VS+
Sbjct: 125 RSWAFYLEVLDS----GYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSF 180

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           NTLI+  CK G +E  + L   ME +    D +T + LI+GLCK G +    L  + M  
Sbjct: 181 NTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCG 240

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G   N   +  ++D   K GK+D A+  F+ M  +    D  TY+++++ LCK   L  
Sbjct: 241 KGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKE 300

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           A +L+     SG+R  +     ++DG    G    A +I+ ++
Sbjct: 301 ARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRM 343



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 94/188 (50%), Gaps = 6/188 (3%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L+ +  +  +++  G   +   +N L++ +CK G + +A L+ DE+ K+G      +  
Sbjct: 122 ELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFN 181

Query: 190 ILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-- 246
            LI G CKAG + +G RL    M       ++  ++ +++ L K+G++D    +F+ M  
Sbjct: 182 TLISGCCKAGAVEEGFRLK-GVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCG 240

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
              V +  T++ ++   CK  ++  A K     L  GVR       A+++GL   G  +E
Sbjct: 241 KGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKE 300

Query: 305 AKKIQSKI 312
           A+++ +++
Sbjct: 301 ARRLVNEM 308


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 160/323 (49%), Gaps = 10/323 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T +I+ N LC       AL    G+ + G++P +VTY  LIKGLC   R+  A 
Sbjct: 122 LSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEAT 181

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDG--FGYC 119
            +   +   G  PNA+TY T++K   +    N   KL  E+L+   + G         Y 
Sbjct: 182 RLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYS 241

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    K+GR  EA +  E+M   G+  D++SY+TLI+ +C  GK + +  L DEM  Q
Sbjct: 242 IIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQ 301

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D  T ++LID LCK G +  A+  LE M + G   NL  YN ++D     G ++ A
Sbjct: 302 GVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSA 361

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F SM  K    D  +Y+++++  CK  ++  A  L    L+ G     +    ++ G
Sbjct: 362 RELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKG 421

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
           L   G   +AKK+   ++   +S
Sbjct: 422 LFQKGKVGDAKKLFGVMKTYGVS 444



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 39/306 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I+++GLCK    D A  +F  ++  G +P++++Y+ LI G C AG+   ++ +
Sbjct: 235 PGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHL 294

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ D G  P+ +T++ ++    +  K     ++L  M ++G   +   Y ++I  F  
Sbjct: 295 FDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE------------ 175
           +G L  A +    M + G++ D +SY TLIN YCK  K++ A  L +E            
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTT 414

Query: 176 -----------------------MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                                  M+  G   +   + I +DGLCK   +  A      + 
Sbjct: 415 YGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELK 474

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
              F  N+E Y+C++D L K GK++ A  +FE +  +    D  TY+ M+H  CK  ++ 
Sbjct: 475 SYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534

Query: 269 SASKLL 274
           +A+ L 
Sbjct: 535 NANILF 540



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 152/311 (48%), Gaps = 8/311 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF+++++ LCK      A ++   + + G VP L+TYN LI G C  G 
Sbjct: 298 MVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGD 357

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +AR +   +   G  P+ I+YTT++    +  K K  + + + M + G + +   Y T
Sbjct: 358 LNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGT 417

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G++ +A      M T GV  +   Y   ++  CK   L  A  L +E++   
Sbjct: 418 LLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYN 477

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F+ +   ++ LIDGLCKAG ++ A    E +++ G   ++  YN ++    K G++D+A 
Sbjct: 478 FKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNAN 537

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +FE ME      D   Y++++   C+  +L    KLL   ++  V    ++   VVD L
Sbjct: 538 ILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDML 597

Query: 297 RHSGCRREAKK 307
               C+ E  K
Sbjct: 598 ----CKDEKYK 604



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 10/290 (3%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A   F  + +   +P + ++N L+ GL K         +  E+  +G +P+  T + +  
Sbjct: 75  AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILAN 134

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           C     +    L  ++ + R+GY  +   Y T+I       R+ EAT    +M   G   
Sbjct: 135 CLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP 194

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEM----EKQGFECDK--YTHTILIDGLCKAGNIK 202
           + V+Y TLI   C+ G +  A  L  EM     + G  C     T++I+IDGLCK G   
Sbjct: 195 NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMV 258
            A+   E M   G   ++ +Y+ ++      GK D + ++F+ M  +    D  T+S ++
Sbjct: 255 EAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLI 314

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             LCK  ++  A KLL   ++ G+        +++DG    G    A+++
Sbjct: 315 DTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAREL 364


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 162/309 (52%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N++LNG+C+    D+A+     L  +G  P  V+YNI++KGL  A R   A  +
Sbjct: 14  PDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKL 73

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++E+   G  PN +T+  ++    R    +  +E+L  + + G T +   Y  ++ AF K
Sbjct: 74  MEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCK 133

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ +A  ++E MV+ G   DIVSYNTL+   C+ G+++ A  LL +++ +G      +
Sbjct: 134 QKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLIS 193

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---E 244
           +  +IDGL KAG  K A   L+ M   G   ++  Y  I   L ++ KI+ AI  F   +
Sbjct: 194 YNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQ 253

Query: 245 SMEVKDSFT-YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            M ++ +   Y++++  LCK +   +A  L    + +G    +S    +V+GL + G  +
Sbjct: 254 DMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVK 313

Query: 304 EAKKIQSKI 312
           EA+ +  ++
Sbjct: 314 EARDLLGQL 322



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 100/199 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP + ++N +L+  CK +  D A+     +   G  P++V+YN L+  LC+ G +  A  
Sbjct: 118 TPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAID 177

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L +L   G +P  I+Y T++    +  K K  LE+L  M  KG   D   Y T+ +   
Sbjct: 178 LLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLC 237

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  +++EA     ++   G++  +V YN ++   CK  +   A  L   M   G   ++ 
Sbjct: 238 REDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNES 297

Query: 187 THTILIDGLCKAGNIKGAR 205
           T+TIL++GL   G +K AR
Sbjct: 298 TYTILVEGLAYEGLVKEAR 316


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 160/316 (50%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF+ +LNGL       +A+++F  + K G+ P+++TY+ +I GLCK G    A 
Sbjct: 43  LQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAI 102

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK++ + G  PN + Y+TI+    +++     +E LS M  +G + +   Y +++  F
Sbjct: 103 QLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGF 162

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +GR  EAT   +QMV   V  D V++N L++   KEG +  A  + + M ++G E + 
Sbjct: 163 CNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNV 222

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+DG C    +  A+     M + G   ++ +YN ++    K G+ID A  +   
Sbjct: 223 NTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAE 282

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D+ TYS+++   C+  R   A KLL      G+         V+DGL   G 
Sbjct: 283 MSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGH 342

Query: 302 RREAKKIQSKIRMAKI 317
             EA ++   ++ +KI
Sbjct: 343 LDEAFELLKAMQESKI 358



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P T TFNI+++GL K      A  +F  + + G  P + TYN L+ G C   +
Sbjct: 178 MVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQ 237

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +   +   G AP+  +Y  ++K   ++ +      +L+ M  K  T D   Y T
Sbjct: 238 MDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYST 297

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + GR ++A   +E+M + G+  D+++Y+ +++  CK+G L+ A+ LL  M++  
Sbjct: 298 LMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESK 357

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E + + +TILI G+C  G ++ AR     +   G   ++  Y  ++  L K G  + A 
Sbjct: 358 IEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEAC 417

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +F  M V     +S TY+ ++    +     +A +L+
Sbjct: 418 ELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLI 455



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 136/302 (45%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++ LCK++    A+     +   G  P +VTY+ ++ G C  GR   A  +
Sbjct: 115 PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++ +    P+ +T+  ++    +         +   M  KG   +   Y  ++  +  
Sbjct: 175 FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCS 234

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ EA      MV  G    + SYN LI  +CK G+++ A  LL EM  +    D  T
Sbjct: 235 QSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVT 294

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+ G C+ G  + A+  LE M   G   +L  Y+ ++D L K G +D A  + ++M+
Sbjct: 295 YSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQ 354

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 + F Y+ ++  +C   +L +A +L  +    G++        ++ GL   G   
Sbjct: 355 ESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSN 414

Query: 304 EA 305
           EA
Sbjct: 415 EA 416



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 151/319 (47%), Gaps = 6/319 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDN--ALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           M   ++ P   T  I++N  C + +     A  +   + K G  P  VT++ L+ GL   
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
            ++  A  +  E+   G+ P+ ITY+TI+    +     + +++L  M+ KG   +   Y
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVY 120

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            T+I +  K   + EA +++ +MV  G+  ++V+Y+++++ +C  G+   A  L  +M +
Sbjct: 121 STIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE 180

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +    D  T  IL+DGL K G I  A+   E M + G + N+  YN ++D      ++D 
Sbjct: 181 RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDE 240

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A  +F  M  K       +Y+ ++   CK+ R+  A  LL       +         ++ 
Sbjct: 241 AQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMK 300

Query: 295 GLRHSGCRREAKKIQSKIR 313
           G    G  ++A+K+  ++R
Sbjct: 301 GFCQDGRPQDAQKLLEEMR 319



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 106/226 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++NI++ G CK+   D A  +   +      P+ VTY+ L+KG C+ GR + A+ +
Sbjct: 255 PSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKL 314

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  P+ +TY+ ++    +        E+L AM+      + F Y  +I     
Sbjct: 315 LEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCN 374

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L+ A +    +   G+Q D+V+Y  +I+   K G    A  L  +M   G   +  T
Sbjct: 375 FGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCT 434

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
           + ++I G  + G+   A   +E M   GF ++   +  + D   +D
Sbjct: 435 YNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDLESRD 480


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 148/269 (55%), Gaps = 6/269 (2%)

Query: 2   ICG-DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +CG  L P   TF  +++G CK    D AL+ F+ +   G  P+LVTYN LI GLCK G 
Sbjct: 344 MCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGD 403

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ AR ++ E+  SG  P+ IT+TT++  C ++   +  LEI   M  +G   D   +  
Sbjct: 404 LKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTA 463

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR+ +A   +  M++ G + D  +Y  +I+ +CK+G ++  + LL EM+  G
Sbjct: 464 LISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDG 523

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHA 239
                 T+  L++GLCK G +K A++ L+ M  +G   N   YN ++D   K G  +D  
Sbjct: 524 HVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVD-- 581

Query: 240 INVFESME--VKDSFTYSSMVHNLCKAKR 266
           +++F S +  V D  +Y+++V+   K  +
Sbjct: 582 VDIFNSEKGLVTDYASYTALVNESSKTSK 610



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 145/294 (49%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN +++G CK+   +   R+   ++  G  P++ T++ LI GLCK GRL    
Sbjct: 279 LRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGS 338

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +  K  L L+    M  +G   D   Y  +I   
Sbjct: 339 LLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGL 398

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G LKEA   + +M   G++ D +++ TLI+  CK+G +E+A  +   M ++G E D 
Sbjct: 399 CKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDD 458

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T LI GLC+ G +  A   L  M   GF  +   Y  ++D   K G +     + + 
Sbjct: 459 VAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKE 518

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M+    V    TY+++++ LCK  ++ +A  LL + L  GV         ++DG
Sbjct: 519 MQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDG 572



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 131/260 (50%), Gaps = 6/260 (2%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+ P++  +N+L+ G CKAG +  AR +  E+   G  P  +++ T++  C ++   + G
Sbjct: 243 GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEG 302

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             +   M+ +G   D F +  +I    K GRL E +   ++M   G+  + V++ TLI+ 
Sbjct: 303 FRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDG 362

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CK GK++ A      M  QG   D  T+  LI+GLCK G++K AR  +  M   G   +
Sbjct: 363 QCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPD 422

Query: 220 LEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
              +  ++D   KDG ++ A+      V E +E+ D   +++++  LC+  R+  A ++L
Sbjct: 423 KITFTTLIDGCCKDGDMESALEIKRRMVEEGIEL-DDVAFTALISGLCREGRVHDAGRML 481

Query: 275 LSCLKSGVRILKSAQKAVVD 294
              L +G +        V+D
Sbjct: 482 TDMLSAGFKPDDPTYTMVID 501



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 8/223 (3%)

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           R + L LE+L +    GY    + +  ++  F K G +  A    +++   G++  +VS+
Sbjct: 231 RSWALYLEVLDS----GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSF 286

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           NTLI+  CK G +E  + L   ME +G   D +T + LI+GLCK G +    L  + M  
Sbjct: 287 NTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCG 346

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G   N   +  ++D   K GK+D A+  F+ M  +    D  TY+++++ LCK   L  
Sbjct: 347 RGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKE 406

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           A +L+     SG++  K     ++DG    G    A +I+ ++
Sbjct: 407 ARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRM 449



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 119/281 (42%), Gaps = 24/281 (8%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGR 60
           I   LTP   +  I LN LC      + L  F  L  +  F   L +Y  ++  LC    
Sbjct: 77  ILPSLTPRHVSKLITLNPLCLP--PSSLLSFFNHLASRPPFRHTLHSYCTMLHFLCLHRM 134

Query: 61  LRTARWILKELGDSGHAPNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A  ++  L       +A T +++I++   R+  +   +         G  FD     
Sbjct: 135 LPQAHSLVSFLVSRKGTNSASTLFSSILRTMPRHHHHHHSV---------GLVFDA---- 181

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN--LYCKEGKLEAAYLLLDEME 177
            +I+A+V  G   +A      +  +   + I     L+   +  +  ++E ++ L  E+ 
Sbjct: 182 -LISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLEVL 240

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
             G+    Y   +L+ G CKAG++  ARL  + + K G    + ++N ++    K G ++
Sbjct: 241 DSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVE 300

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
               +   ME +    D FT+S++++ LCK  RL   S L 
Sbjct: 301 EGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLF 341


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 162/340 (47%), Gaps = 39/340 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++NGLC+  +  +AL +   + + GF P++ TYN LI GLCK G +  A  I
Sbjct: 314 PDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEI 373

Query: 68  LKELGDSGHAPNAITYTTIMK---------------------------CCFRN------- 93
           L ++     +PN +TY T++                            C F +       
Sbjct: 374 LNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 433

Query: 94  -RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
              ++L +E+   MK KG   D F Y  +I +    GRL+EA   +++M + G   ++V+
Sbjct: 434 TNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVT 493

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YNTLI+ +CK  ++E A  + DEME QG   +  T+  LIDGLCK   ++ A   ++ M 
Sbjct: 494 YNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQML 553

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLP 268
             G   +   YN ++    + G I  A ++ ++M       DS TY +++  L KA R+ 
Sbjct: 554 MEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVE 613

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            AS+LL +    G+ +       V+  L       EA ++
Sbjct: 614 LASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRL 653



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 155/304 (50%), Gaps = 4/304 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D +P T T+N +++ LCK    + A  + R L   G +P++ T+N LI+GLC    
Sbjct: 377 MILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNN 436

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R A  + +E+   G  P+  TY  ++       + +  L +L  M+  G + +   Y T
Sbjct: 437 HRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNT 496

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K  R++EA +  ++M   G+  ++V+YNTLI+  CK  ++E A  L+D+M  +G
Sbjct: 497 LIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEG 556

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + DK+T+  L+   C+AG+IK A   ++ M   G + +   Y  ++  L K G+++ A 
Sbjct: 557 LKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELAS 616

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +  ++++K       TY+ ++  L + KR   A +L    ++ G        K V  GL
Sbjct: 617 RLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGL 676

Query: 297 RHSG 300
              G
Sbjct: 677 CSGG 680



 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 153/317 (48%), Gaps = 39/317 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   TF  ++ G  +    + ALR+   +   G     VT N+L+ G CK GR+    
Sbjct: 242 LSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVL 301

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + E+ + G  P+  T+ +++    R    K  LEIL  M ++G+  D F Y ++I   
Sbjct: 302 SFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGL 361

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA----------------- 168
            K+G ++EA + + QM+      + V+YNTLI+  CKE ++E                  
Sbjct: 362 CKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 421

Query: 169 ------------------AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                             A  L +EM+ +G   D++T+ +LID LC  G ++ A   L+ 
Sbjct: 422 CTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKE 481

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M   G   N+  YN ++D   K+ +I+ A  +F+ ME+    ++  TY++++  LCK +R
Sbjct: 482 MESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRR 541

Query: 267 LPSASKLLLSCLKSGVR 283
           +  A++L+   L  G++
Sbjct: 542 VEEAAQLMDQMLMEGLK 558



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 138/270 (51%), Gaps = 47/270 (17%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFR----GLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           T+N +LN L       N L++       +   G  P++ T+NILIK LC+A ++R A  +
Sbjct: 178 TYNFLLNVLVDG----NKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILM 233

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++E+G  G +P+  T+TT+M+                                    F++
Sbjct: 234 MEEMGSYGLSPDEKTFTTLMQ-----------------------------------GFIE 258

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A    EQMV  G     V+ N L++ YCKEG++E     +DEM  +GF  D++T
Sbjct: 259 EGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFT 318

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              L++GLC+ G++K A   L+ M + GFD ++  YN ++  L K G+++ A+ +   M 
Sbjct: 319 FNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMI 378

Query: 248 VKD----SFTYSSMVHNLCKAKRLPSASKL 273
           ++D    + TY++++  LCK  ++  A++L
Sbjct: 379 LRDFSPNTVTYNTLISTLCKENQVEEATEL 408



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 1/187 (0%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+N +++GLCKNR  + A ++   +   G  P+  TYN L+   C+AG ++ A  I++ 
Sbjct: 527 VTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQT 586

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  +G  P+++TY T++    +  + +L   +L  ++ KG       Y  VI A  +  R
Sbjct: 587 MTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKR 646

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG-KLEAAYLLLDEMEKQGFECDKYTHT 189
             EA     +M+  G   D V+Y  +    C  G  +  A   L EM  +GF  D  +  
Sbjct: 647 TSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFL 706

Query: 190 ILIDGLC 196
           +L +GLC
Sbjct: 707 MLAEGLC 713



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 40/244 (16%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           A K+  +      Y  V+    K G        +++M   G ++   ++  LI  Y K  
Sbjct: 95  ASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFE 154

Query: 165 KLEAAYLLLDEMEKQ------------------------------------GFECDKYTH 188
             + A  ++D ME++                                    G + D  T 
Sbjct: 155 LFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTF 214

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            ILI  LC+A  I+ A L +E M   G   + + +  ++    ++G ++ A+ + E M  
Sbjct: 215 NILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVA 274

Query: 249 ----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                 + T + +VH  CK  R+      +      G R  +    ++V+GL   G  + 
Sbjct: 275 AGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKH 334

Query: 305 AKKI 308
           A +I
Sbjct: 335 ALEI 338


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 153/286 (53%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI+++G CK+     A+R+F  +Q+ G  P +VTYNILI GLC  G+
Sbjct: 219 MVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGK 278

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++  S   PN +T+  ++    +N+     + + + M+++G   +   Y T
Sbjct: 279 VDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTT 338

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+ K GR+++A      M+  G+  ++ +YN LI   C++G ++AA  L++EM  + 
Sbjct: 339 LIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK 398

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+ ILID LCK G  + A   L+ M + G + +   YN ++D   ++G +  A+
Sbjct: 399 LSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAAL 458

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            V   ME K    +  T++ ++   C   RL  A+ LL   L+ G+
Sbjct: 459 IVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGL 504



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 152/309 (49%), Gaps = 7/309 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR---LRTARWIL 68
           +FNI++NGLCK    + A  +   ++  G  P ++TYN LI G CK GR   +  A  IL
Sbjct: 157 SFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL 216

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           KE+   G  PN +TY  ++    ++      + +   M+R+G   +   Y  +I      
Sbjct: 217 KEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSD 276

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G++ EA    +QMV+  ++ ++V++N LIN +CK   +  A  L ++MEKQG + +  T+
Sbjct: 277 GKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTY 336

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           T LID  CK G ++ A      M   G    +  YNC++  L + G +  A ++   M  
Sbjct: 337 TTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVS 396

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           K    D  TY+ ++ +LCK      A KLL    + G+         ++DG    G  R 
Sbjct: 397 KKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRA 456

Query: 305 AKKIQSKIR 313
           A  +++++ 
Sbjct: 457 ALIVRTRME 465



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 145/302 (48%), Gaps = 7/302 (2%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L+GL K     +   ++R + K      ++++NI++ GLCK G+L  A  +++++  
Sbjct: 124 NPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKV 183

Query: 74  SGHAPNAITYTTIMKC-CFRNRKYKL--GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            G +PN ITY T++   C   R  K+     IL  M  KG   +   Y  +I  F K   
Sbjct: 184 WGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDEN 243

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +  A     +M   G++ ++V+YN LIN  C +GK++ A  L D+M     E +  TH +
Sbjct: 244 VSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNV 303

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           LI+G CK   +  A      M K G D N   Y  ++D   KDG+++ A  ++  M  + 
Sbjct: 304 LINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRG 363

Query: 251 SF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            F    TY+ ++  LC+   + +A  L+   +   +         ++D L   G  R+A 
Sbjct: 364 IFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAV 423

Query: 307 KI 308
           K+
Sbjct: 424 KL 425



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 8/209 (3%)

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           GDS    N+I    ++    RN K   G E        G+         +++  VK    
Sbjct: 78  GDS-FCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESEN 136

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +      +M+   ++L+++S+N ++N  CK GKL  A  ++++M+  G   +  T+  L
Sbjct: 137 GDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTL 196

Query: 192 IDGLCKAGNIK---GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           IDG CK G I     A   L+ M   G   N   YN ++D   KD  +  A+ VF  M+ 
Sbjct: 197 IDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQR 256

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKL 273
           +    +  TY+ +++ LC   ++  A  L
Sbjct: 257 QGLRPNVVTYNILINGLCSDGKVDEAVAL 285


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 156/305 (51%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++ ++NG C+       L++   +Q  G  P   TYN +I  LCK G++  A  +
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERV 345

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G AP+ + YTT++    +         +   M+++  + D   Y  VI    +
Sbjct: 346 LREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQ 405

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA     +MV   ++ D V+Y  LI+ YCKEGK++ A+ L ++M + G   +  T
Sbjct: 406 TGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT 465

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L DGLCK G +  A   L  M + G + N+  YN +V+ L K G ID A+ + + ME
Sbjct: 466 YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDME 525

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           V     D+ TY++++   CK++ +  A +LL   L   ++        +++G   SG   
Sbjct: 526 VAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLE 585

Query: 304 EAKKI 308
           + +K+
Sbjct: 586 DGEKL 590



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 137/269 (50%), Gaps = 4/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           TA++NI+ + LC+      A ++   ++  G +P++++Y+ +I G C+ G L+    +++
Sbjct: 253 TASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIE 312

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G  PN  TY  ++    +  K      +L  M  +G   DG  Y T+I  F K+G
Sbjct: 313 EMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLG 372

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +  A    ++M    +  D ++Y  +I   C+ G++  A  L  EM  +  E D+ T+T
Sbjct: 373 NVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYT 432

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LIDG CK G +K A      M ++G   N+  Y  + D L K G++D A  +   M  K
Sbjct: 433 ALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRK 492

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLL 274
               + +TY+S+V+ LCKA  +  A KL+
Sbjct: 493 GLELNIYTYNSLVNGLCKAGNIDQAVKLM 521



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 149/291 (51%), Gaps = 4/291 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL++F    + G      +YNI+   LC+ GR+  A  +L ++   G  P+ I+Y+T++ 
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVIN 296

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              +  + +  L+++  M+ KG   + + Y  VI    K G++ EA   + +M+++G+  
Sbjct: 297 GYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAP 356

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D V Y TLI+ +CK G + +AY L DEM+K+    D  T+T +I GLC+ G +  A    
Sbjct: 357 DGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLF 416

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKA 264
             M     + +   Y  ++D   K+GK+  A ++   M       +  TY+++   LCK 
Sbjct: 417 HEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKC 476

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
             + +A++LL    + G+ +      ++V+GL  +G   +A K+   + +A
Sbjct: 477 GEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVA 527



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 151/352 (42%), Gaps = 39/352 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P    +  +++G CK     +A R+F  +QK    P+ +TY  +I GLC+ GR
Sbjct: 349 MISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGR 408

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+      P+ +TYT ++    +  K K    + + M + G T +   Y  
Sbjct: 409 VMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTA 468

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +     K G +  A + + +M   G++L+I +YN+L+N  CK G ++ A  L+ +ME  G
Sbjct: 469 LADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG 528

Query: 181 FECDKYTHTILID-----------------------------------GLCKAGNIKGAR 205
           F  D  T+T L+D                                   G C +G ++   
Sbjct: 529 FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE 588

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNL 261
             L++M + G   N   YN ++ +      +     ++  M     V D  TY+ ++   
Sbjct: 589 KLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGH 648

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           CKA+ +  A  L    +  G  +  S+  A++ G        EA+++  ++R
Sbjct: 649 CKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMR 700



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 108/226 (47%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++NGLCK    D A+++ + ++  GF P+ VTY  L+   CK+  +  A  +L+++
Sbjct: 500 TYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM 559

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D    P  +T+  +M     +   + G ++L  M  KG   +   Y ++I  +     +
Sbjct: 560 LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNM 619

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +  T+    M   GV  D  +YN LI  +CK   ++ A+ L  +M  +GF     ++  L
Sbjct: 620 RATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNAL 679

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           I G  K      AR   E M + G  ++ E YN   D    +GK++
Sbjct: 680 IKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKME 725



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 2/187 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++  CK+R    A  + R +      P +VT+N+L+ G C +G L     +
Sbjct: 531 PDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKL 590

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           LK + + G  PNA TY +++K  C RN   +   EI   M  KG   DG  Y  +I    
Sbjct: 591 LKWMLEKGIMPNATTYNSLIKQYCIRN-NMRATTEIYRGMCAKGVVPDGNTYNILIKGHC 649

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K   +KEA      MV  G  L + SYN LI  + K  K   A  L ++M ++G   D+ 
Sbjct: 650 KARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADRE 709

Query: 187 THTILID 193
            + I  D
Sbjct: 710 IYNIFAD 716



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 129/271 (47%), Gaps = 5/271 (1%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK-YKLGLEILSA 105
            ++I  + L +AG L  AR +  ++ + G   +  +    +     +    K+ L++   
Sbjct: 184 VFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVE 243

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
               G  ++   Y  +  +  ++GR+ EA   + QM   G   D++SY+T+IN YC+ G+
Sbjct: 244 FPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGE 303

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           L+    L++EM+ +G + + YT+  +I  LCK G +  A   L  M   G   +   Y  
Sbjct: 304 LQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTT 363

Query: 226 IVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++D   K G +  A  +F+ M+ +    D  TY++++  LC+  R+  A KL    +   
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +   +    A++DG    G  +EA  + +++
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQM 454



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   TFN+++NG C +   ++  ++ + + + G +P   TYN LIK  C    
Sbjct: 559 MLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNN 618

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R    I + +   G  P+  TY  ++K   + R  K    +   M  KG+      Y  
Sbjct: 619 MRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNA 678

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           +I  F K  +  EA +  EQM  +G+  D   YN   ++   EGK+E    L DE
Sbjct: 679 LIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDE 733


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN +LNGL  + + ++A R+F  ++     P++V+YN +IKG CKAG  + A 
Sbjct: 221 IEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAM 280

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++      P+ ITY T+++ C+    +   L +   M+ +G       Y  VI   
Sbjct: 281 EKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGL 340

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR  E +   E M   G + ++  Y  LI+ Y K G +  A  L + M+ +GFE D 
Sbjct: 341 CKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDD 400

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ ++++GLCK+G +  A  + E+        N   Y+ ++D LGK G++D A   FE 
Sbjct: 401 VTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEE 460

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M      +DS+ Y++++  L K+ ++  A  L     K G          ++ GL     
Sbjct: 461 MVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHR 520

Query: 302 RREAKKI 308
             EA K+
Sbjct: 521 NEEALKL 527



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 133/281 (47%), Gaps = 4/281 (1%)

Query: 32  MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
           +F   ++ GF+  +   N LI+     G +    W+ + + +SG  P+  T+  ++    
Sbjct: 177 IFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLV 236

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
            +   +    +   M+      D   Y T+I  + K G  K+A +    M    ++ D +
Sbjct: 237 NSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKI 296

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y TLI     EG  ++   L  EME++G E   + ++++I GLCK G         E M
Sbjct: 297 TYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENM 356

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
           NK G  +N+  Y  ++D  GK+G ++ AIN+FE M+      D  TY  +V+ LCK+ RL
Sbjct: 357 NKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRL 416

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             A +    C  + V +      +++DGL  +G   EA+K 
Sbjct: 417 DEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKF 457



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 149/316 (47%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M CG + P   ++N M+ G CK   T  A+  F  ++K    P+ +TY  LI+     G 
Sbjct: 251 MECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGN 310

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             +   + +E+ + G       Y+ ++    ++ +   G  +   M +KG   +   Y  
Sbjct: 311 FDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTA 370

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+ K G + EA +  E+M  +G + D V+Y  ++N  CK G+L+ A    +  +   
Sbjct: 371 LIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNE 430

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +   ++ LIDGL KAG +  A    E M + G   +   YN ++D L K GK++ A+
Sbjct: 431 VAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEAL 490

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F+ ME     +  +TY+ ++  L K  R   A KL    +  G+    ++ +A+  GL
Sbjct: 491 VLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGL 550

Query: 297 RHSGCRREAKKIQSKI 312
             SG    A KI  ++
Sbjct: 551 CLSGKVARACKILDEL 566



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 40/249 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T+ +++NGLCK+   D A+  F   + +      + Y+ LI GL KAGR+  A 
Sbjct: 396 FEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAE 455

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+ + G   ++  Y  ++    ++ K +  L +   M+++G     + Y  +I+  
Sbjct: 456 KFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGL 515

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTL----------------------------- 156
            K  R +EA    + M+  G+     S+  L                             
Sbjct: 516 FKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPET 575

Query: 157 -----INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                IN+ CK G+ E A  L D +  +G E      TILI+ L KAGN   A L ++ M
Sbjct: 576 AFEDMINVLCKAGRTEQACKLADGIVDRGREVPGRVRTILINALRKAGN---ADLAMKLM 632

Query: 212 NK---IGFD 217
           +    IG+D
Sbjct: 633 HSKIGIGYD 641



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 4/216 (1%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           I    K KG+    F   ++I +F  +G ++E      +M   G++  + ++N L+N   
Sbjct: 177 IFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLV 236

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
               +E+A  + + ME      D  ++  +I G CKAGN K A      M K   + +  
Sbjct: 237 NSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKI 296

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            Y  ++     +G  D  +++++ ME +        YS ++  LCK  R    S +  + 
Sbjct: 297 TYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENM 356

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            K G +   +   A++D    +G   EA  +  +++
Sbjct: 357 NKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMK 392



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP TA+F  +  GLC +     A ++   L   G +PE   +  +I  LCKAGR
Sbjct: 531 MIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPE-TAFEDMINVLCKAGR 589

Query: 61  LRTA 64
              A
Sbjct: 590 TEQA 593


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++ LCK R  ++AL  F+ + + G  P +VTY  L+ GLC +GR   A  +
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARL 247

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      PN ITY+ ++    +N K     EI   M R     D   Y ++I     
Sbjct: 248 LRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCL 307

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA    + MV+ G   D+VSYNTLIN +CK  ++E    L  +M ++G   +  T
Sbjct: 308 HDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVT 367

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G  + G++  A+     M+  G   ++  YN ++  L  +G ++ A+ +FE M+
Sbjct: 368 YNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQ 427

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY++++  +CK  ++  A  L  S    G++        ++ GL   G + 
Sbjct: 428 KSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQH 487

Query: 304 EAKKIQSKIR 313
           E + + +K++
Sbjct: 488 EVEALYTKMK 497



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 134/262 (51%), Gaps = 6/262 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++NGLC +   ++A R+ R + K    P ++TY+ L+    K G++  A+
Sbjct: 221 IRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            I +E+      P+ +TY++++   C  +R  +   ++   M  KG   D   Y T+I  
Sbjct: 281 EIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN-QMFDLMVSKGCFPDVVSYNTLING 339

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K  R+++      +M   G+  + V+YNTLI  + + G ++ A     +M+  G   D
Sbjct: 340 FCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPD 399

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +T+ IL+ GLC  G ++ A +  E M K   D ++  Y  ++  + K GK++ A  +F 
Sbjct: 400 IWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFC 459

Query: 245 SMEVK----DSFTYSSMVHNLC 262
           S+ +K    D  TY++M+  LC
Sbjct: 460 SLSLKGLKPDIVTYTTMMSGLC 481



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 109/204 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP   T++ +L+   KN     A  +F  + +    P++VTY+ LI GLC   R
Sbjct: 251 MIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G  P+ ++Y T++    + ++ + G+++   M ++G   +   Y T
Sbjct: 311 IDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNT 370

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F ++G + +A ++  QM + GV  DI +YN L+   C  G LE A ++ ++M+K  
Sbjct: 371 LIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSE 430

Query: 181 FECDKYTHTILIDGLCKAGNIKGA 204
            + D  T+T +I G+CK G ++ A
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDA 454



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 149/309 (48%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +L+ + K +  D  + + + ++  G   +L T+NI+I   C   ++  A  +
Sbjct: 83  PSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSV 142

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+ +T  +++    R  +    + ++  M   GY  D   Y  +I +  K
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCK 202

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ +A D+ +++   G++ ++V+Y  L+N  C  G+   A  LL +M K+    +  T
Sbjct: 203 TRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVIT 262

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+D   K G +  A+   E M ++  D ++  Y+ +++ L    +ID A  +F+ M 
Sbjct: 263 YSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D  +Y+++++  CKAKR+    KL     + G+         ++ G    G   
Sbjct: 323 SKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVD 382

Query: 304 EAKKIQSKI 312
           +A++  S++
Sbjct: 383 KAQEFFSQM 391



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 101/199 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++ ++NGLC +   D A +MF  +   G  P++V+YN LI G CKA R
Sbjct: 286 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKR 345

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +++   G   N +TY T+++  F+        E  S M   G + D + Y  
Sbjct: 346 VEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNI 405

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G L++A    E M    + LDIV+Y T+I   CK GK+E A+ L   +  +G
Sbjct: 406 LLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKG 465

Query: 181 FECDKYTHTILIDGLCKAG 199
            + D  T+T ++ GLC  G
Sbjct: 466 LKPDIVTYTTMMSGLCTKG 484



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 14/266 (5%)

Query: 20  LCKNRYTD----NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           L K R  D    +A+ +FR + K    P +V +N L+  + K  +      + K++   G
Sbjct: 56  LSKTRLRDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLG 115

Query: 76  HAPNAITYTTIMKC---CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
              +  T+  ++ C   CF   +  L L +L  M + GY  D     +++  F +  R+ 
Sbjct: 116 IRNDLYTFNIVINCFCCCF---QVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   +++MV  G + DIV+YN +I+  CK  ++  A     E+ ++G   +  T+T L+
Sbjct: 173 DAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALV 232

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           +GLC +G    A   L  M K     N+  Y+ ++D   K+GK+  A  +FE M      
Sbjct: 233 NGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSID 292

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D  TYSS+++ LC   R+  A+++ 
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMF 318



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 87/174 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N ++NG CK +  ++ +++FR + + G V   VTYN LI+G  + G +  A+  
Sbjct: 328 PDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEF 387

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G +P+  TY  ++     N   +  L I   M++     D   Y TVI    K
Sbjct: 388 FSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCK 447

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
            G++++A      +   G++ DIV+Y T+++  C +G       L  +M+++G 
Sbjct: 448 TGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGL 501



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 4/193 (2%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L +A +   +MV       IV +N L++   K  K +    L  +ME  G   D YT  
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-EV 248
           I+I+  C    +  A   L  M K+G++ +      +V+   +  ++  A+++ + M E+
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D   Y++++ +LCK +R+  A        + G+R       A+V+GL +SG   +A
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDA 244

Query: 306 KKIQSKIRMAKIS 318
            ++   +   KI+
Sbjct: 245 ARLLRDMIKRKIT 257


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 169/328 (51%), Gaps = 11/328 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   TFN ++NGLCK    + A  +   ++  GF P +VTYN LI G CK GR
Sbjct: 221 MIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGR 280

Query: 61  ---LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
              +  A  ILKE+ ++  +PN++T+  ++    ++      L++   M+ +G       
Sbjct: 281 VGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVT 340

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y +++      G+L EA   +++M++  ++ ++++YN LIN YCK+  LE A  L D + 
Sbjct: 341 YNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIG 400

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           KQG   +  T   L+ G CK G ++ A L  + M + GF  N   YNC++    ++GK++
Sbjct: 401 KQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKME 460

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
              N+   M+ +    D+ TY+ ++   C+ K    A++L+   L  G++        ++
Sbjct: 461 EVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILL 520

Query: 294 DGLRHSGCRREA----KKIQSKIRMAKI 317
           +G    G  R A    K+++ + R A +
Sbjct: 521 NGYCMEGNLRAALNLRKQMEKEGRWANV 548



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 155/287 (54%), Gaps = 6/287 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P + TFN++++G CK+     AL++F  +Q  G  P +VTYN L+ GLC  G+
Sbjct: 294 MVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGK 353

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ +L E+  S   PN ITY  ++    + +  +   E+   + ++G T +   + T
Sbjct: 354 LNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNT 413

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K G+++EA    + M+  G   +  +YN LI  +C+EGK+E    LL+EM+ +G
Sbjct: 414 LLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRG 473

Query: 181 FECDKYTHTILIDGLC-KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            + D  T+ ILI   C K    K ARL  E ++K G   +   YN +++    +G +  A
Sbjct: 474 VKADTVTYNILISAWCEKKEPKKAARLIDEMLDK-GLKPSHLTYNILLNGYCMEGNLRAA 532

Query: 240 INVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +N+ + ME +  +    TY+ ++   C+  +L  A+ LL   L+ G+
Sbjct: 533 LNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGL 579



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 105/203 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   TFN +L+G CK    + A  + + + + GF+P   TYN LI G C+ G++   +
Sbjct: 404 LTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVK 463

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+   G   + +TY  ++      ++ K    ++  M  KG       Y  ++  +
Sbjct: 464 NLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGY 523

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L+ A +  +QM  +G   ++V+YN LI  YC++GKLE A  LL+EM ++G   ++
Sbjct: 524 CMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNR 583

Query: 186 YTHTILIDGLCKAGNIKGARLHL 208
            T+ I+ + + + G +     HL
Sbjct: 584 TTYEIIKEEMMEKGFLPDIEGHL 606



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 154/327 (47%), Gaps = 14/327 (4%)

Query: 1   MICGDLTPCTATF-------NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 53
           +I   L+ C+  F       ++++    +N  T   L  F+    + +   +++ N L+ 
Sbjct: 144 LIFHSLSVCSGQFCANSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLS 203

Query: 54  GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
            L K        ++ KE+     +PN IT+ T++    +  K     +++  MK  G+  
Sbjct: 204 ALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWP 263

Query: 114 DGFGYCTVIAAFVKIGR---LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           +   Y T+I  + K+GR   + +A   +++MV + V  + V++N LI+ +CK+  L AA 
Sbjct: 264 NVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAAL 323

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            + +EM+ QG +    T+  L++GLC  G +  A++ L+ M       N+  YN +++  
Sbjct: 324 KVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGY 383

Query: 231 GKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            K   ++ A  +F+++       +  T+++++H  CK  ++  A  L    L+ G     
Sbjct: 384 CKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNA 443

Query: 287 SAQKAVVDGLRHSGCRREAKKIQSKIR 313
           S    ++ G    G   E K + ++++
Sbjct: 444 STYNCLIVGFCREGKMEEVKNLLNEMQ 470


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++ LCK +  ++A   F+ +++ G  P +VTY  L+ GLC + R   A  +
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++      PN ITY+ ++    +N K     E+   M R     D   Y ++I     
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA    + MV+ G   D+VSYNTLIN +CK  ++E    L  EM ++G   +  T
Sbjct: 308 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVT 367

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G  +AG++  A+     M+  G   ++  YN ++  L  +G+++ A+ +FE M+
Sbjct: 368 YNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++  +CK  ++  A  L  S    G++        ++ GL   G   
Sbjct: 428 KREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLH 487

Query: 304 EAKKIQSKIR 313
           E + + +K++
Sbjct: 488 EVEALYTKMK 497



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 133/262 (50%), Gaps = 6/262 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++NGLC +    +A R+   + K    P ++TY+ L+    K G++  A+
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            + +E+      P+ +TY++++   C  +R  +   ++   M  KG   D   Y T+I  
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN-QMFDLMVSKGCLADVVSYNTLING 339

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K  R+++      +M   G+  + V+YNTLI  + + G ++ A     +M+  G   D
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +T+ IL+ GLC  G ++ A +  E M K   D ++  Y  ++  + K GK++ A ++F 
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 459

Query: 245 SMEVK----DSFTYSSMVHNLC 262
           S+ +K    D  TY++M+  LC
Sbjct: 460 SLSLKGLKPDIVTYTTMMSGLC 481



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 151/315 (47%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +L+ + K +  D  + + + ++  G   +L T+NI+I   C   ++  A  I
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+ +T  +++    R  +    + ++  M   GY  D   Y  +I +  K
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ +A D+ +++   G++ ++V+Y  L+N  C   +   A  LL +M K+    +  T
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+D   K G +  A+   E M ++  D ++  Y+ +++ L    +ID A  +F+ M 
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D  +Y+++++  CKAKR+    KL     + G+         ++ G   +G   
Sbjct: 323 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 382

Query: 304 EAKKIQSKIRMAKIS 318
           +A++  S++    IS
Sbjct: 383 KAQEFFSQMDFFGIS 397



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 123/247 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP   T++ +L+   KN     A  +F  + +    P++VTY+ LI GLC   R
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G   + ++Y T++    + ++ + G+++   M ++G   +   Y T
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F + G + +A ++  QM   G+  DI +YN L+   C  G+LE A ++ ++M+K+ 
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+T +I G+CK G ++ A      ++  G   ++  Y  ++  L   G +    
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVE 490

Query: 241 NVFESME 247
            ++  M+
Sbjct: 491 ALYTKMK 497



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 14/266 (5%)

Query: 20  LCKNRYTD----NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           L K R  D    +A+ +F  + K    P +V +N L+  + K  +      + K++   G
Sbjct: 56  LSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLG 115

Query: 76  HAPNAITYTTIMKC---CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
              +  T+  ++ C   CF   +  L L IL  M + GY  D     +++  F +  R+ 
Sbjct: 116 IRNDLYTFNIVINCFCCCF---QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   +++MV  G + DIV+YN +I+  CK  ++  A+    E+E++G   +  T+T L+
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           +GLC +     A   L  M K     N+  Y+ ++D   K+GK+  A  +FE M      
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 292

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D  TYSS+++ LC   R+  A+++ 
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMF 318


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++ LCK +  ++A   F+ +++ G  P +VTY  L+ GLC + R   A  +
Sbjct: 291 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 350

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++      PN ITY+ ++    +N K     E+   M R     D   Y ++I     
Sbjct: 351 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 410

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA    + MV+ G   D+VSYNTLIN +CK  ++E    L  EM ++G   +  T
Sbjct: 411 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVT 470

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G  +AG++  A+     M+  G   ++  YN ++  L  +G+++ A+ +FE M+
Sbjct: 471 YNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 530

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++  +CK  ++  A  L  S    G++        ++ GL   G   
Sbjct: 531 KREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLH 590

Query: 304 EAKKIQSKIR 313
           E + + +K++
Sbjct: 591 EVEALYTKMK 600



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 157/314 (50%), Gaps = 4/314 (1%)

Query: 4    GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            G L P    +N +++GLCK ++ D+AL +F+ ++  G  P +VTY+ LI  LC  GR   
Sbjct: 864  GKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSD 923

Query: 64   ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            A  +L ++ +    P+  T++ ++    +  K     ++   M ++        Y ++I 
Sbjct: 924  ASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN 983

Query: 124  AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             F    RL EA    E MV+     D+V+YNTLI  +CK  ++E    +  EM ++G   
Sbjct: 984  GFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 1043

Query: 184  DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
            +  T+ ILI GL +AG+   A+   + M   G   N+  YN ++D L K+GK++ A+ VF
Sbjct: 1044 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 1103

Query: 244  ESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            E ++        +TY+ M+  +CKA ++     L  +    GV+    A   ++ G    
Sbjct: 1104 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 1163

Query: 300  GCRREAKKIQSKIR 313
            G + EA  +  +++
Sbjct: 1164 GSKEEADALFKEMK 1177



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 136/265 (51%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI   + P   TF+ +++   K      A +++  + K    P +VTY+ LI G C   R
Sbjct: 931  MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 990

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L  A+ + + +      P+ +TY T++K   + ++ + G+E+   M ++G   +   Y  
Sbjct: 991  LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 1050

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I    + G    A +  ++MV+DGV  +I++YNTL++  CK GKLE A ++ + +++  
Sbjct: 1051 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 1110

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             E   YT+ I+I+G+CKAG ++        ++  G   ++ AYN ++    + G  + A 
Sbjct: 1111 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 1170

Query: 241  NVFESMEVKDSFTYSSMVHNLCKAK 265
             +F+ M+   +   S   + L +A+
Sbjct: 1171 ALFKEMKEDGTLPNSGCYNTLIRAR 1195



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 133/262 (50%), Gaps = 6/262 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++NGLC +    +A R+   + K    P ++TY+ L+    K G++  A+
Sbjct: 324 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 383

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            + +E+      P+ +TY++++   C  +R  +   ++   M  KG   D   Y T+I  
Sbjct: 384 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN-QMFDLMVSKGCLADVVSYNTLING 442

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K  R+++      +M   G+  + V+YNTLI  + + G ++ A     +M+  G   D
Sbjct: 443 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 502

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +T+ IL+ GLC  G ++ A +  E M K   D ++  Y  ++  + K GK++ A ++F 
Sbjct: 503 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 562

Query: 245 SMEVK----DSFTYSSMVHNLC 262
           S+ +K    D  TY++M+  LC
Sbjct: 563 SLSLKGLKPDIVTYTTMMSGLC 584



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 146/299 (48%), Gaps = 5/299 (1%)

Query: 18  NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           NGL + +  D+A+ +F  + K    P ++ ++ L+  + K  +      + +++ + G  
Sbjct: 669 NGLSELKL-DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 727

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
            N  TY+ ++ C  R  +  L L +L  M + GY  +     +++  +    R+ EA   
Sbjct: 728 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 787

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ++QM   G Q + V++NTLI+      K   A  L+D M  +G + D  T+ ++++GLCK
Sbjct: 788 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 847

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
            G+   A   L  M +   +  +  YN I+D L K   +D A+N+F+ ME K    +  T
Sbjct: 848 RGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVT 907

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           YSS++  LC   R   AS+LL   ++  +        A++D     G   EA+K+  ++
Sbjct: 908 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 966



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 1/233 (0%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P   T+N ++ G CK +  +  + +FR + + G V   VTYNILI+GL +AG    A+ I
Sbjct: 1008 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 1067

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             KE+   G  PN +TY T++    +N K +  + +   ++R       + Y  +I    K
Sbjct: 1068 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 1127

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             G++++  D    +   GV+ D+V+YNT+I+ +C++G  E A  L  EM++ G   +   
Sbjct: 1128 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 1187

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +  LI    + G+ + +   ++ M   GF  +      + + L  DG++D + 
Sbjct: 1188 YNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLDKSF 1239



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 151/315 (47%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +L+ + K +  D  + + + ++  G   +L T+NI+I   C   ++  A  I
Sbjct: 186 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 245

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+ +T  +++    R  +    + ++  M   GY  D   Y  +I +  K
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 305

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ +A D+ +++   G++ ++V+Y  L+N  C   +   A  LL +M K+    +  T
Sbjct: 306 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 365

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+D   K G +  A+   E M ++  D ++  Y+ +++ L    +ID A  +F+ M 
Sbjct: 366 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 425

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D  +Y+++++  CKAKR+    KL     + G+         ++ G   +G   
Sbjct: 426 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 485

Query: 304 EAKKIQSKIRMAKIS 318
           +A++  S++    IS
Sbjct: 486 KAQEFFSQMDFFGIS 500



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 108/204 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP   T++ +L+   KN     A  +F  + +    P++VTY+ LI GLC   R
Sbjct: 354 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 413

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G   + ++Y T++    + ++ + G+++   M ++G   +   Y T
Sbjct: 414 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 473

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F + G + +A ++  QM   G+  DI +YN L+   C  G+LE A ++ ++M+K+ 
Sbjct: 474 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 533

Query: 181 FECDKYTHTILIDGLCKAGNIKGA 204
            + D  T+T +I G+CK G ++ A
Sbjct: 534 MDLDIVTYTTVIRGMCKTGKVEEA 557



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 132/268 (49%), Gaps = 6/268 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++I++N  C+      AL +   + K G+ P +VT + L+ G C + R+  A  ++ ++
Sbjct: 732 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 791

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G+ PN +T+ T++   F + K    + ++  M  KG   D   Y  V+    K G  
Sbjct: 792 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 851

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++  ++ YNT+I+  CK   ++ A  L  EME +G   +  T++ L
Sbjct: 852 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 911

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           I  LC  G    A   L  M +   + ++  ++ ++D   K+GK+  A  +++ M VK S
Sbjct: 912 ISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM-VKRS 970

Query: 252 F-----TYSSMVHNLCKAKRLPSASKLL 274
                 TYSS+++  C   RL  A ++ 
Sbjct: 971 IDPSIVTYSSLINGFCMHDRLDEAKQMF 998



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 2/247 (0%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG 59
            M+   + P   T++ ++NG C +   D A +MF  +  KH F P++VTYN LIKG CK  
Sbjct: 966  MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYK 1024

Query: 60   RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            R+     + +E+   G   N +TY  +++  F+     +  EI   M   G   +   Y 
Sbjct: 1025 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 1084

Query: 120  TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            T++    K G+L++A    E +    ++  I +YN +I   CK GK+E  + L   +  +
Sbjct: 1085 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 1144

Query: 180  GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            G + D   +  +I G C+ G+ + A    + M + G   N   YN ++    +DG  + +
Sbjct: 1145 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREAS 1204

Query: 240  INVFESM 246
              + + M
Sbjct: 1205 AELIKEM 1211



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 14/266 (5%)

Query: 20  LCKNRYTD----NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           L K R  D    +A+ +F  + K    P +V +N L+  + K  +      + K++   G
Sbjct: 159 LSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLG 218

Query: 76  HAPNAITYTTIMKC---CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
              +  T+  ++ C   CF   +  L L IL  M + GY  D     +++  F +  R+ 
Sbjct: 219 IRNDLYTFNIVINCFCCCF---QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 275

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   +++MV  G + DIV+YN +I+  CK  ++  A+    E+E++G   +  T+T L+
Sbjct: 276 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 335

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           +GLC +     A   L  M K     N+  Y+ ++D   K+GK+  A  +FE M      
Sbjct: 336 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 395

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D  TYSS+++ LC   R+  A+++ 
Sbjct: 396 PDIVTYSSLINGLCLHDRIDEANQMF 421



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 139/305 (45%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ +L+ + K    D  + +   +Q  G      TY+ILI   C+  +L  A  +
Sbjct: 693 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 752

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ PN +T ++++     +++    + ++  M   GY  +   + T+I     
Sbjct: 753 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 812

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +  EA   +++MV  G Q D+V+Y  ++N  CK G  + A+ LL++ME+   E     
Sbjct: 813 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 872

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +IDGLCK  ++  A    + M   G   N+  Y+ ++  L   G+   A  +   M 
Sbjct: 873 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 932

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D FT+S+++    K  +L  A KL    +K  +        ++++G        
Sbjct: 933 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 992

Query: 304 EAKKI 308
           EAK++
Sbjct: 993 EAKQM 997



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P    +N M++G C+    + A  +F+ +++ G +P    YN LI+   + G    +  +
Sbjct: 1148 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 1207

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
            +KE+   G A +A T   +       R  K  L++LS
Sbjct: 1208 IKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 1244


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 144/279 (51%), Gaps = 5/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ GL K+    +AL +   + + G  P+++T+N ++ GLCK  R+  A  +
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV 530

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K   + G  PN +TY+T++    +  K    L++L+ M   G   +   Y TV+   +K
Sbjct: 531 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 590

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+++A   + QM   G   D V+YNTLI+ + K  +L  A  LL EM + GF     T
Sbjct: 591 VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVT 650

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L  GLC++G    A   L+YM   G   N   Y+ IVD L K G++  A+  FE M 
Sbjct: 651 YTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMA 710

Query: 248 -----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                      YS+++  LCKA R+  A + L   +++G
Sbjct: 711 RDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAG 749



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 14/308 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++GLC++   D   ++   +   G  P  VTYN L+  L   GR + A  +
Sbjct: 34  PTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSL 93

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +  +G  P  IT+  I+K   +  + +    ++  M  +G+  D   +  ++ A  +
Sbjct: 94  LERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCE 153

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+ EA  + +Q++  G   D V+YNT+++   K G+LEAA ++L  + +       +T
Sbjct: 154 LGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFT 213

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            TI +DGL KAGN+ GA    + M + G   N   Y+ ++D L K GK+D A+ +     
Sbjct: 214 FTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKN 273

Query: 248 VKDS-FTYSSMVHNLCKAKRLPSASKLL--------LSCLKSGVRILKSAQKA-----VV 293
            +   F +SS++H LC+A RL  A +LL        + C  S +  L  A++      + 
Sbjct: 274 SQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELF 333

Query: 294 DGLRHSGC 301
           D ++ SGC
Sbjct: 334 DVMKESGC 341



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 138/260 (53%), Gaps = 4/260 (1%)

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +VTYN+LI GLCKAGR+  A    ++    G  P  +TY+T++    R+ +   G ++L 
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            M  +G   +   Y T++ A +  GR KEA   +E+M  +G   +++++  +I   CKEG
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           ++EAA+ ++DEM  +GF  D   HT+L+  LC+ G +  A    + +  IGF  +   YN
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYN 180

Query: 225 CIVDRLGKDGKIDHAINVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +VD L K G+++ A  V     ES      FT++  V  L KA  L  A +   S  ++
Sbjct: 181 TMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQT 240

Query: 281 GVRILKSAQKAVVDGLRHSG 300
           GV        A++DGL  +G
Sbjct: 241 GVSPNTVTYDALIDGLCKAG 260



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 157/303 (51%), Gaps = 11/303 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L+P   TFN +L+GLCK +   +A  +F+   + G  P +VTY+ LI GL K  +
Sbjct: 499 MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAK 558

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++ + G   N +TY+T++    +  + +  + +L  M+  G   D   Y T
Sbjct: 559 MDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNT 618

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K  RL+EA   + +M+  G    +V+Y TL +  C+ G+ + A  +LD M  +G
Sbjct: 619 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 678

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD----SNLEAYNCIVDRLGKDGKI 236
              +  T++ ++DGLCKAG +  A   L Y  K+  D     ++ AY+ ++D L K G+I
Sbjct: 679 CAPNAITYSSIVDGLCKAGRVTEA---LGYFEKMARDEVVAPHVIAYSALIDGLCKAGRI 735

Query: 237 DHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           D A    E M     + D  T+S +++ LC A R+ +  +L     + G +    A  A+
Sbjct: 736 DEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAM 795

Query: 293 VDG 295
           ++ 
Sbjct: 796 INA 798



 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 151/309 (48%), Gaps = 3/309 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++G  K +    A+ + R + + GF P +VTY  L  GLC++GR   A  I
Sbjct: 611 PDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEI 670

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAFV 126
           L  +   G APNAITY++I+    +  +    L     M R          Y  +I    
Sbjct: 671 LDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLC 730

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+ EA +++E+M+  G   D+V+++ LIN  C  G+++    L   M ++G + D Y
Sbjct: 731 KAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIY 790

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +  +I+  C  G    A   LE M   G   N   +  ++  L  + +ID A++ F S+
Sbjct: 791 AYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSI 850

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
             + +D  +Y++++ +L  ++R   A +LL + +  G          V+DGL  +G    
Sbjct: 851 PEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEV 910

Query: 305 AKKIQSKIR 313
           A K+  ++R
Sbjct: 911 AAKLLQEMR 919



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 3/266 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI     P   TF+I++NGLC     D  L +F G+ + G   ++  YN +I   C  G 
Sbjct: 745  MIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGE 804

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
               A  +L+E+   G A N +T+  ++K    N +    +    ++       D   Y T
Sbjct: 805  FSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPED--CRDEISYNT 862

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I + V   R ++A + +  MV DG   D  +Y T+++   K G  E A  LL EM  +G
Sbjct: 863  LITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRG 922

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               D  T+TI+I GL KA  +  A  + E M +     +   Y+ ++D   K  K+D A 
Sbjct: 923  HSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAW 982

Query: 241  NVFESMEVKDSFT-YSSMVHNLCKAK 265
             +  S  ++ + T YS+MV +LCK +
Sbjct: 983  KLLRSSGIEPTITMYSTMVDSLCKNR 1008



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 135/269 (50%), Gaps = 10/269 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF +++ GLCK    + A R+   +   GFVP++  + +L+  LC+ GR+  A + 
Sbjct: 104 PELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFF 163

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++   G  P+A+TY T++   ++  + +    +L  +     +   F +   +    K
Sbjct: 164 FQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSK 223

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L  A ++ + M   GV  + V+Y+ LI+  CK GKL+ A  LL +   Q      + 
Sbjct: 224 AGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQA---GMFA 280

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + L+ GLC+A  ++ A   L+ M  +    N+  +N +++ L +  ++D A  +F+ M+
Sbjct: 281 FSSLLHGLCQAHRLEEAIQLLKAMPCV---PNVVCFNSLMNGLCQARRVDEAFELFDVMK 337

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASK 272
                 D  TY+ ++  LCK +R+P A +
Sbjct: 338 ESGCSADVITYNILLKGLCKLRRIPEAYR 366



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 9/295 (3%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            + P    ++ +++GLCK    D A      + + G +P++VT++ILI GLC AGR+ T  
Sbjct: 715  VAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL 774

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +   + + G   +   Y  ++       ++     +L  MK  G   +   +  VI A 
Sbjct: 775  ELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKAL 834

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                R+ EA  Y   +  D    D +SYNTLI       + E A  LL  M   G   D 
Sbjct: 835  CGNDRIDEAVSYFHSIPEDC--RDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDA 892

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              +  ++DGL KAG+ + A   L+ M   G   +L  Y  ++  L K  ++  A + FE 
Sbjct: 893  CNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEE 952

Query: 246  MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            M  K    D+  YSS++   CKA ++  A KLL S   SG+    +    +VD L
Sbjct: 953  MLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRS---SGIEPTITMYSTMVDSL 1004



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 155/362 (42%), Gaps = 56/362 (15%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TF I ++GL K      A   F  + + G  P  VTY+ LI GLCKAG+L  A  
Sbjct: 208 SPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALG 267

Query: 67  ILKELGDSGH-----------------------------APNAITYTTIMKCCFRNRKYK 97
           +L++                                    PN + + ++M    + R+  
Sbjct: 268 LLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVD 327

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV-TDGVQLDIVSYNTL 156
              E+   MK  G + D   Y  ++    K+ R+ EA  ++E M  T+G   ++V+++TL
Sbjct: 328 EAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTL 387

Query: 157 INLYCKEGKLEAAYLLLDEM-EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           I   C  G++  A+ + + M   +G   +++T+  L++GLCKAG+ +      E M +  
Sbjct: 388 IQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLERE 447

Query: 216 FDSN---------------------LEAYNCIVDRLGKDGKIDHAINVFESM----EVKD 250
           + S+                     L  YN +V  L K G +  A+ + E M       D
Sbjct: 448 WRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPD 507

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
             T++S++  LCK +R+  A  +    L+ G R        ++DGL       EA ++ +
Sbjct: 508 VITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLA 567

Query: 311 KI 312
           K+
Sbjct: 568 KM 569



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 134/299 (44%), Gaps = 35/299 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P      ++L+ LC+    D A   F+ +   GF P+ VTYN ++ GL KAGR
Sbjct: 132 MVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGR 191

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L+ L +S  +P   T+T  +    +        E   +M + G + +   Y  
Sbjct: 192 LEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDA 251

Query: 121 VIAAFVKIGRLKEATDYME---------------------QMVTDGVQL--------DIV 151
           +I    K G+L  A   +                        + + +QL        ++V
Sbjct: 252 LIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVV 311

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
            +N+L+N  C+  +++ A+ L D M++ G   D  T+ IL+ GLCK   I  A  H+E M
Sbjct: 312 CFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELM 371

Query: 212 NKI-GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-----KDSFTYSSMVHNLCKA 264
            +  G   N+  ++ ++  L   G+++ A  V+E M        + FTY+ ++  LCKA
Sbjct: 372 RRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKA 430



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 144/326 (44%), Gaps = 27/326 (8%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA-R 65
            P    FN ++NGLC+ R  D A  +F  +++ G   +++TYNIL+KGLCK  R+  A R
Sbjct: 307 VPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYR 366

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYCTVIAA 124
            +       G +PN +T++T+++      +     E+   M   +G + + F Y  ++  
Sbjct: 367 HVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEG 426

Query: 125 FVKIGRLKEATDYMEQMV-----------TDGVQLD----------IVSYNTLINLYCKE 163
             K G  +      EQM+               ++D          +V+YNTL+    K 
Sbjct: 427 LCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKS 486

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
           G +  A  LL+ M + G   D  T   ++DGLCK   I  A    +   + G   N+  Y
Sbjct: 487 GMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTY 546

Query: 224 NCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           + ++D L K  K+D A+ +   M       ++ TYS++V  L K  R+  A  +L     
Sbjct: 547 STLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRD 606

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREA 305
           +G          ++DG       REA
Sbjct: 607 AGCLPDAVTYNTLIDGFFKRQRLREA 632



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 113/238 (47%), Gaps = 5/238 (2%)

Query: 10   TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            T T  I++  LC N   D A+  F  + +     + ++YN LI  L  + R   A  +L+
Sbjct: 824  TVTHGIVIKALCGNDRIDEAVSYFHSIPED--CRDEISYNTLITSLVASRRSEQALELLR 881

Query: 70   ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
             +   G +P+A  Y T+M   F+    ++  ++L  M+ +G++ D   Y  +I+   K  
Sbjct: 882  AMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAK 941

Query: 130  RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +L  A DY E+M+   ++ D + Y++LI+ +CK  K++ A+ LL      G E     ++
Sbjct: 942  QLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL---RSSGIEPTITMYS 998

Query: 190  ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             ++D LCK      A   +  M     +  +  +  +      +G++D A+ +   ++
Sbjct: 999  TMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 172/382 (45%), Gaps = 80/382 (20%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT------------- 47
           MI  D  P  A +N ++ GLCK    D A  + + + +   VP+++T             
Sbjct: 118 MIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNA 177

Query: 48  ----------------------YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                                 YN L+ GLCK  +L     +L+E+ ++G  P+  +Y T
Sbjct: 178 LDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNT 237

Query: 86  IMKCCFRNRKYKLGLEILSAMKRK---------GYTFDGF-------------------- 116
           ++ C   + KY+   +IL  M  K             DGF                    
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR 297

Query: 117 ------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
                  Y T+I  F +  RL +A   ME M   G+  D+V+YN L++  CK GKLE A+
Sbjct: 298 CAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAH 357

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            LL+ M ++    D  T++IL++GLCK G +  ARL LE M + G   NL  +N ++D  
Sbjct: 358 ELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGF 417

Query: 231 GKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            K GK+D    V E M+      D  TYS+++   CKA R+  A  +L      G+   K
Sbjct: 418 CKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDK 471

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
           ++  ++++GL  +G   EA+++
Sbjct: 472 ASYSSMLEGLCSTGKVEEAQEV 493



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 159/341 (46%), Gaps = 39/341 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+ I+++GLC+ +  D A ++   + +    P+   YN LI GLCK G++  AR 
Sbjct: 89  SPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARN 148

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK + +    P+ ITYT+++  C +        +++  MK  G T D   Y  ++    
Sbjct: 149 VLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLC 208

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  +L+E +  +E+MV  G + D  SYNT++   C+ GK E A  +L++M ++    D  
Sbjct: 209 KQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVV 268

Query: 187 THTILIDGLCKAGNIKGA------------------------------RLH-----LEYM 211
           T+  L+DG CK   +  A                              RL      +E M
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDM 328

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRL 267
            K G   +L  YNC++D L K GK++ A  + E M  KD      TYS +V+ LCK  ++
Sbjct: 329 FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKV 388

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             A  LL   L+ G +        ++DG   +G   E  K+
Sbjct: 389 DDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKV 429



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 153/299 (51%), Gaps = 10/299 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N +L+GLCK    + A  +   + +    P++VTY+IL+ GLCK G++  AR
Sbjct: 333 ISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDAR 392

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ + + G  PN +T+ T++    +  K   G ++L  MK    T D   Y T+I  +
Sbjct: 393 LLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGY 452

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+++A   +      G+  D  SY++++   C  GK+E A  ++D M KQG     
Sbjct: 453 CKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTS 506

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             + ++I GLC       A   L+ M++ G + NL  Y+ +++ L K  +++ AINV + 
Sbjct: 507 SHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDV 566

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M     V D  TY+S++   CK  ++ +A +   +   SG    K A   ++ G   SG
Sbjct: 567 MLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSG 625



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 145/289 (50%), Gaps = 2/289 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T ++N ++  LC++   + A ++   + +    P++VTYN L+ G CK  ++  A  +
Sbjct: 230 PDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERL 289

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++     AP  ITYTT++    R  +      ++  M + G + D   Y  ++    K
Sbjct: 290 LEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCK 349

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L+EA + +E MV      D+V+Y+ L+N  CK GK++ A LLL+ M ++G + +  T
Sbjct: 350 AGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVT 409

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              +IDG CKAG +      LE M ++    ++  Y+ ++D   K  ++  A  +     
Sbjct: 410 FNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGI-- 467

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             D  +YSSM+  LC   ++  A +++    K G     S    ++ GL
Sbjct: 468 SPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGL 516



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 10/258 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN M++G CK    D   ++   +++    P++VTY+ LI G CKA R++ A  I
Sbjct: 405 PNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAI 464

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L      G +P+  +Y+++++      K +   E++  M ++G       Y  +I     
Sbjct: 465 L------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCD 518

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + R  EA   ++ M   G + ++ +Y+ LIN  CK  ++E A  +LD M ++G   D  T
Sbjct: 519 VERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVAT 578

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LIDG CK   +  A    + M   G + +  AYN ++    + G ++ AI V + M 
Sbjct: 579 YTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLML 638

Query: 248 VK----DSFTYSSMVHNL 261
            K    D+ TY S++ +L
Sbjct: 639 EKGCNPDAATYFSLMRSL 656



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 144/338 (42%), Gaps = 37/338 (10%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYN------------------ 49
           P  +T+  ++ G  +   +   L +   +    F P+++T+N                  
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH 81

Query: 50  ---------------ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 94
                          ILI GLC+  R+  A  +L E+      P+A  Y  ++    +  
Sbjct: 82  FRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMG 141

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
           K      +L  M  +    D   Y ++I    +   L EA   ME+M   G+  D V+YN
Sbjct: 142 KIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYN 201

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
            L+N  CK+ +LE    LL+EM + G E D +++  ++  LC++G  + A   LE M + 
Sbjct: 202 ALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEK 261

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
               ++  YN ++D   K  K+D A  + E M          TY++++    +A RL  A
Sbjct: 262 KCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADA 321

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +++    K+G+         ++DGL  +G   EA ++
Sbjct: 322 YRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHEL 359



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 93/190 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P  A+++ ML GLC     + A  +   + K G  P    Y ++I GLC   R   A 
Sbjct: 467 ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEAL 526

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ + + G  PN  TY+ ++    + ++ +  + +L  M  KG   D   Y ++I  F
Sbjct: 527 KMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGF 586

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            KI ++  A    + M   G + D ++YN LI+ +C+ G +E A  ++  M ++G   D 
Sbjct: 587 CKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDA 646

Query: 186 YTHTILIDGL 195
            T+  L+  L
Sbjct: 647 ATYFSLMRSL 656



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 113/271 (41%), Gaps = 35/271 (12%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P   TY  LI G  +AG  +    I  E+     +P+ IT+ TI+K   +          
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLD---RA 78

Query: 103 LSAMKRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           LS  + K + +   F YC +I    +  R+ EA   +++M+      D   YN LI   C
Sbjct: 79  LSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLC 138

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K GK++AA  +L  M ++    D  T+T LI G C+   +  AR  +E M + G      
Sbjct: 139 KMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGL----- 193

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                                       D+  Y+++++ LCK  +L   SKLL   +++G
Sbjct: 194 --------------------------TPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAG 227

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
                 +   VV  L  SG   EA KI  K+
Sbjct: 228 REPDTFSYNTVVACLCESGKYEEAGKILEKM 258



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 37/216 (17%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R  E   +  +  +D  +    +Y  LI  + + G  +    + +EM  + F  D  TH 
Sbjct: 4   RPLEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHN 63

Query: 190 ILIDGLCKAGNIKGARLH---------------------------------LEYMNKIGF 216
            ++   C+ G++  A  H                                 L+ M +   
Sbjct: 64  TILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDC 123

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
             +   YNC++  L K GKID A NV + M     V D  TY+S++   C+   L  A K
Sbjct: 124 HPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARK 183

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           L+    +SG+     A  A+++GL       E  K+
Sbjct: 184 LMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKL 219


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 157/300 (52%), Gaps = 5/300 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   TFNI++N LCK      ALR+F  ++  G  P+ VTYN LI  LC  G+L  A 
Sbjct: 295 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 354

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK++  +G   + ITY TI+    +  + +   E+   M  +G + +   + T+I   
Sbjct: 355 DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 414

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ +A + + QM+++G+Q + ++YN+++  YCK+G ++ A  +L+ M   GFE D 
Sbjct: 415 CKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDV 474

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GLCKAG  + A   L  M   G     +AYN ++  L +   I  A+++F  
Sbjct: 475 VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFRE 534

Query: 246 M----EVKDSFTYSSMVHNLCK-AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M    E  D+ TY  +   LC+    +  A   +L  +  G     S+ + + +GL + G
Sbjct: 535 MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 594



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 4/317 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           I     P   T+N  +NGLC+N +  +AL++   + + G  P++ TYNI++  LCK G+L
Sbjct: 186 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 245

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A+ IL ++ D G  P+  T+ T++       + +  L++   +  KG + D + +  +
Sbjct: 246 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 305

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I A  K+G    A    E+M   G   D V+YNTLI+  C  GKL  A  LL +ME  G 
Sbjct: 306 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 365

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
                T+  +IDGLCK   I+ A    + M+  G   N   +N ++D L KD KID A  
Sbjct: 366 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 425

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +   M  +    ++ TY+S++ + CK   +  A+ +L +   +G  +       +++GL 
Sbjct: 426 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 485

Query: 298 HSGCRREAKKIQSKIRM 314
            +G  + A K+   +R+
Sbjct: 486 KAGRTQVALKVLRGMRI 502



 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 7/282 (2%)

Query: 9   CTAT---FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           C+AT    N+++NG CK    ++AL   +     GF P+ +TYN  + GLC+   +  A 
Sbjct: 155 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 214

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   GH P+  TY  ++ C  +N + +    IL+ M  +G   D   + T+IAA 
Sbjct: 215 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 274

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               RL+EA D   Q+   GV  D+ ++N LIN  CK G    A  L +EM+  G   D+
Sbjct: 275 CTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDE 334

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LID LC  G +  A   L+ M   G   +   YN I+D L K  +I+ A  VF+ 
Sbjct: 335 VTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQ 394

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M++    +++ T+++++  LCK K++  A +L+   +  G++
Sbjct: 395 MDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQ 436



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 145/296 (48%), Gaps = 6/296 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF  ++ G  +    + ALR+   + + G     VT N+LI G CK GR+  A 
Sbjct: 120 VAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDAL 179

Query: 66  -WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +I +E+ D G  P+ ITY T +    +N      L+++  M ++G+  D F Y  V+  
Sbjct: 180 GYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNC 238

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+L+EA   + QMV  G   DI ++NTLI   C   +LE A  L  ++  +G   D
Sbjct: 239 LCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPD 298

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT  ILI+ LCK G+   A    E M   G   +   YN ++D L   GK+  A+++ +
Sbjct: 299 VYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLK 358

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ME     + + TY++++  LCK  R+  A ++       G+         ++DGL
Sbjct: 359 DMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 414



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 5/303 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++  LC     + AL + R +   G  P++ T+NILI  LCK G    A  +
Sbjct: 262 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 321

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ +SG  P+ +TY T++       K    L++L  M+  G       Y T+I    K
Sbjct: 322 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 381

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R++EA +  +QM   G+  + +++NTLI+  CK+ K++ A+ L+++M  +G + +  T
Sbjct: 382 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 441

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++   CK G+IK A   LE M   GF+ ++  Y  +++ L K G+   A+ V   M 
Sbjct: 442 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 501

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL-RHSGCR 302
           +K        Y+ ++ +L +   +  A  L     + G        K V  GL R  G  
Sbjct: 502 IKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI 561

Query: 303 REA 305
           +EA
Sbjct: 562 KEA 564



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 164/349 (46%), Gaps = 39/349 (11%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N +LN L +         ++  +   G  P++VT+N L+K LC+A ++RTA  +L+
Sbjct: 54  TVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLE 113

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G AP+  T+TT+M+        +  L + + M   G +        +I  + K+G
Sbjct: 114 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 173

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A  Y++Q + DG + D ++YNT +N  C+   +  A  ++D M ++G + D +T+ 
Sbjct: 174 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 233

Query: 190 ILIDGLCKAGNIKGARLHLEYM----------------------NKI------------- 214
           I+++ LCK G ++ A+  L  M                      N++             
Sbjct: 234 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 293

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G   ++  +N +++ L K G    A+ +FE M+      D  TY++++ NLC   +L  A
Sbjct: 294 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 353

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
             LL     +G          ++DGL       EA+++  ++ +  IS 
Sbjct: 354 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 402



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 9/259 (3%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           N L+   G+Q      + V YN L+  L +  +++    +  E+G  G  P+ +T+ T+M
Sbjct: 42  NQLQPLFGIQA-----DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLM 96

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K   R  + +  + +L  M  +G   D   + T++  FV+ G ++ A     +M+  G  
Sbjct: 97  KALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 156

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
              V+ N LIN YCK G++E A   + +    GFE D+ T+   ++GLC+  ++  A   
Sbjct: 157 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKV 216

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           ++ M + G D ++  YN +V+ L K+G+++ A  +   M     + D  T+++++  LC 
Sbjct: 217 MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCT 276

Query: 264 AKRLPSASKLLLSCLKSGV 282
             RL  A  L       GV
Sbjct: 277 GNRLEEALDLARQVTVKGV 295



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 1/157 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N +L   CK      A  +   +  +GF  ++VTY  LI GLCKAGR
Sbjct: 430 MISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 489

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+ +   G  P    Y  +++  FR    +  L +   M   G   D   Y  
Sbjct: 490 TQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKI 549

Query: 121 VIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           V     +  G +KEA D+M +MV  G   +  S+  L
Sbjct: 550 VFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 586


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 157/300 (52%), Gaps = 5/300 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   TFNI++N LCK      ALR+F  ++  G  P+ VTYN LI  LC  G+L  A 
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 446

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK++  +G   + ITY TI+    +  + +   E+   M  +G + +   + T+I   
Sbjct: 447 DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 506

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ +A + + QM+++G+Q + ++YN+++  YCK+G ++ A  +L+ M   GFE D 
Sbjct: 507 CKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDV 566

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GLCKAG  + A   L  M   G     +AYN ++  L +   I  A+++F  
Sbjct: 567 VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFRE 626

Query: 246 M----EVKDSFTYSSMVHNLCK-AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M    E  D+ TY  +   LC+    +  A   +L  +  G     S+ + + +GL + G
Sbjct: 627 MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 4/317 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           I     P   T+N  +NGLC+N +  +AL++   + + G  P++ TYNI++  LCK G+L
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A+ IL ++ D G  P+  T+ T++       + +  L++   +  KG + D + +  +
Sbjct: 338 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I A  K+G    A    E+M   G   D V+YNTLI+  C  GKL  A  LL +ME  G 
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
                T+  +IDGLCK   I+ A    + M+  G   N   +N ++D L KD KID A  
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +   M  +    ++ TY+S++ + CK   +  A+ +L +   +G  +       +++GL 
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 298 HSGCRREAKKIQSKIRM 314
            +G  + A K+   +R+
Sbjct: 578 KAGRTQVALKVLRGMRI 594



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 7/282 (2%)

Query: 9   CTAT---FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           C+AT    N+++NG CK    ++AL   +     GF P+ +TYN  + GLC+   +  A 
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   GH P+  TY  ++ C  +N + +    IL+ M  +G   D   + T+IAA 
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 366

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               RL+EA D   Q+   GV  D+ ++N LIN  CK G    A  L +EM+  G   D+
Sbjct: 367 CTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDE 426

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LID LC  G +  A   L+ M   G   +   YN I+D L K  +I+ A  VF+ 
Sbjct: 427 VTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQ 486

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M++    +++ T+++++  LCK K++  A +L+   +  G++
Sbjct: 487 MDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQ 528



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 145/296 (48%), Gaps = 6/296 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF  ++ G  +    + ALR+   + + G     VT N+LI G CK GR+  A 
Sbjct: 212 VAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDAL 271

Query: 66  -WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +I +E+ D G  P+ ITY T +    +N      L+++  M ++G+  D F Y  V+  
Sbjct: 272 GYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNC 330

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+L+EA   + QMV  G   DI ++NTLI   C   +LE A  L  ++  +G   D
Sbjct: 331 LCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPD 390

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT  ILI+ LCK G+   A    E M   G   +   YN ++D L   GK+  A+++ +
Sbjct: 391 VYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLK 450

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ME     + + TY++++  LCK  R+  A ++       G+         ++DGL
Sbjct: 451 DMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 506



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 5/303 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++  LC     + AL + R +   G  P++ T+NILI  LCK G    A  +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ +SG  P+ +TY T++       K    L++L  M+  G       Y T+I    K
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R++EA +  +QM   G+  + +++NTLI+  CK+ K++ A+ L+++M  +G + +  T
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 533

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++   CK G+IK A   LE M   GF+ ++  Y  +++ L K G+   A+ V   M 
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL-RHSGCR 302
           +K        Y+ ++ +L +   +  A  L     + G        K V  GL R  G  
Sbjct: 594 IKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI 653

Query: 303 REA 305
           +EA
Sbjct: 654 KEA 656



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 164/349 (46%), Gaps = 39/349 (11%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N +LN L +         ++  +   G  P++VT+N L+K LC+A ++RTA  +L+
Sbjct: 146 TVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLE 205

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G AP+  T+TT+M+        +  L + + M   G +        +I  + K+G
Sbjct: 206 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 265

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A  Y++Q + DG + D ++YNT +N  C+   +  A  ++D M ++G + D +T+ 
Sbjct: 266 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 325

Query: 190 ILIDGLCKAGNIKGARLHLEYM----------------------NKI------------- 214
           I+++ LCK G ++ A+  L  M                      N++             
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G   ++  +N +++ L K G    A+ +FE M+      D  TY++++ NLC   +L  A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
             LL     +G          ++DGL       EA+++  ++ +  IS 
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 9/259 (3%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           N L+   G+Q      + V YN L+  L +  +++    +  E+G  G  P+ +T+ T+M
Sbjct: 134 NQLQPLFGIQA-----DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLM 188

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K   R  + +  + +L  M  +G   D   + T++  FV+ G ++ A     +M+  G  
Sbjct: 189 KALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 248

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
              V+ N LIN YCK G++E A   + +    GFE D+ T+   ++GLC+  ++  A   
Sbjct: 249 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKV 308

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           ++ M + G D ++  YN +V+ L K+G+++ A  +   M     + D  T+++++  LC 
Sbjct: 309 MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCT 368

Query: 264 AKRLPSASKLLLSCLKSGV 282
             RL  A  L       GV
Sbjct: 369 GNRLEEALDLARQVTVKGV 387



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 128/308 (41%), Gaps = 42/308 (13%)

Query: 16  MLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +L  L +    D ALRM    L +  F P    Y  +I+ L   G L   + ++ E+   
Sbjct: 44  LLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRRE 103

Query: 75  GH-------------------------------------APNAITYTTIMKCCFRNRKYK 97
           GH                                       + + Y  ++       K K
Sbjct: 104 GHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMK 163

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           L   + S M  +G   D   + T++ A  +  +++ A   +E+M + GV  D  ++ TL+
Sbjct: 164 LLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLM 223

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
             + +EG +EAA  +   M + G    K T  +LI+G CK G ++ A  +++     GF+
Sbjct: 224 QGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFE 283

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
            +   YN  V+ L ++  + HA+ V + M       D FTY+ +V+ LCK  +L  A  +
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 343

Query: 274 LLSCLKSG 281
           L   +  G
Sbjct: 344 LNQMVDRG 351



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 1/157 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N +L   CK      A  +   +  +GF  ++VTY  LI GLCKAGR
Sbjct: 522 MISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 581

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+ +   G  P    Y  +++  FR    +  L +   M   G   D   Y  
Sbjct: 582 TQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKI 641

Query: 121 VIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           V     +  G +KEA D+M +MV  G   +  S+  L
Sbjct: 642 VFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 157/300 (52%), Gaps = 5/300 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   TFNI++N LCK      ALR+F  ++  G  P+ VTYN LI  LC  G+L  A 
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 446

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK++  +G   + ITY TI+    +  + +   E+   M  +G + +   + T+I   
Sbjct: 447 DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 506

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ +A + + QM+++G+Q + ++YN+++  YCK+G ++ A  +L+ M   GFE D 
Sbjct: 507 CKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDV 566

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GLCKAG  + A   L  M   G     +AYN ++  L +   I  A+++F  
Sbjct: 567 VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFRE 626

Query: 246 M----EVKDSFTYSSMVHNLCK-AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M    E  D+ TY  +   LC+    +  A   +L  +  G     S+ + + +GL + G
Sbjct: 627 MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 4/317 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           I     P   T+N  +NGLC+N +  +AL++   + + G  P++ TYNI++  LCK G+L
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A+ IL ++ D G  P+  T+ T++       + +  L++   +  KG + D + +  +
Sbjct: 338 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I A  K+G    A    E+M   G   D V+YNTLI+  C  GKL  A  LL +ME  G 
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
                T+  +IDGLCK   I+ A    + M+  G   N   +N ++D L KD KID A  
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +   M  +    ++ TY+S++ + CK   +  A+ +L +   +G  +       +++GL 
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 298 HSGCRREAKKIQSKIRM 314
            +G  + A K+   +R+
Sbjct: 578 KAGRTQVALKVLRGMRI 594



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 7/282 (2%)

Query: 9   CTAT---FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           C+AT    N+++NG CK    ++AL   +     GF P+ +TYN  + GLC+   +  A 
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   GH P+  TY  ++ C  +N + +    IL+ M  +G   D   + T+IAA 
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 366

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               RL+EA D   Q+   GV  D+ ++N LIN  CK G    A  L +EM+  G   D+
Sbjct: 367 CTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDE 426

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LID LC  G +  A   L+ M   G   +   YN I+D L K  +I+ A  VF+ 
Sbjct: 427 VTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQ 486

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M++    +++ T+++++  LCK K++  A +L+   +  G++
Sbjct: 487 MDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQ 528



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 145/296 (48%), Gaps = 6/296 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF  ++ G  +    + ALR+   + + G     VT N+LI G CK GR+  A 
Sbjct: 212 VAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDAL 271

Query: 66  -WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +I +E+ D G  P+ ITY T +    +N      L+++  M ++G+  D F Y  V+  
Sbjct: 272 GYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNC 330

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+L+EA   + QMV  G   DI ++NTLI   C   +LE A  L  ++  +G   D
Sbjct: 331 LCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPD 390

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT  ILI+ LCK G+   A    E M   G   +   YN ++D L   GK+  A+++ +
Sbjct: 391 VYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLK 450

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ME     + + TY++++  LCK  R+  A ++       G+         ++DGL
Sbjct: 451 DMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 506



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 5/303 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++  LC     + AL + R +   G  P++ T+NILI  LCK G    A  +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ +SG  P+ +TY T++       K    L++L  M+  G       Y T+I    K
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R++EA +  +QM   G+  + +++NTLI+  CK+ K++ A+ L+++M  +G + +  T
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 533

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++   CK G+IK A   LE M   GF+ ++  Y  +++ L K G+   A+ V   M 
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL-RHSGCR 302
           +K        Y+ ++ +L +   +  A  L     + G        K V  GL R  G  
Sbjct: 594 IKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI 653

Query: 303 REA 305
           +EA
Sbjct: 654 KEA 656



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 164/349 (46%), Gaps = 39/349 (11%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N +LN L +         ++  +   G  P++VT+N L+K LC+A ++RTA  +L+
Sbjct: 146 TVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLE 205

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G AP+  T+TT+M+        +  L + + M   G +        +I  + K+G
Sbjct: 206 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 265

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A  Y++Q + DG + D ++YNT +N  C+   +  A  ++D M ++G + D +T+ 
Sbjct: 266 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 325

Query: 190 ILIDGLCKAGNIKGARLHLEYM----------------------NKI------------- 214
           I+++ LCK G ++ A+  L  M                      N++             
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G   ++  +N +++ L K G    A+ +FE M+      D  TY++++ NLC   +L  A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
             LL     +G          ++DGL       EA+++  ++ +  IS 
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 9/259 (3%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           N L+   G+Q      + V YN L+  L +  +++    +  E+G  G  P+ +T+ T+M
Sbjct: 134 NQLQPLFGIQA-----DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLM 188

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K   R  + +  + +L  M  +G   D   + T++  FV+ G ++ A     +M+  G  
Sbjct: 189 KALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 248

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
              V+ N LIN YCK G++E A   + +    GFE D+ T+   ++GLC+  ++  A   
Sbjct: 249 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKV 308

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           ++ M + G D ++  YN +V+ L K+G+++ A  +   M     + D  T+++++  LC 
Sbjct: 309 MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCT 368

Query: 264 AKRLPSASKLLLSCLKSGV 282
             RL  A  L       GV
Sbjct: 369 GNRLEEALDLARQVTVKGV 387



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 128/308 (41%), Gaps = 42/308 (13%)

Query: 16  MLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +L  L +    D ALRM    L +  F P    Y  +I+ L   G L   + ++ E+   
Sbjct: 44  LLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRRE 103

Query: 75  GH-------------------------------------APNAITYTTIMKCCFRNRKYK 97
           GH                                       + + Y  ++       K K
Sbjct: 104 GHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMK 163

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           L   + S M  +G   D   + T++ A  +  +++ A   +E+M + GV  D  ++ TL+
Sbjct: 164 LLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLM 223

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
             + +EG +EAA  +   M + G    K T  +LI+G CK G ++ A  +++     GF+
Sbjct: 224 QGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFE 283

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
            +   YN  V+ L ++  + HA+ V + M       D FTY+ +V+ LCK  +L  A  +
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 343

Query: 274 LLSCLKSG 281
           L   +  G
Sbjct: 344 LNQMVDRG 351



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 1/157 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N +L   CK      A  +   +  +GF  ++VTY  LI GLCKAGR
Sbjct: 522 MISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 581

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+ +   G  P    Y  +++  FR    +  L +   M   G   D   Y  
Sbjct: 582 TQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKI 641

Query: 121 VIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           V     +  G +KEA D+M +MV  G   +  S+  L
Sbjct: 642 VFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 149/279 (53%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFNI+++G CK++    A+++F  + + G  P +VTYN LI GLC  G++  A  +
Sbjct: 234 PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATAL 293

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ +S   PN IT+  ++    +N+  K   E+   M ++G T +   Y  +I A+ K
Sbjct: 294 RDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCK 353

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              +++A      M+  GV  D+ +YN LI   C++G LEAA  L+ EM+ +  + D  T
Sbjct: 354 DENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLIT 413

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + ILID LC  G +K A   L+ M + G   +   YN ++D   K+G +  A+N+   ME
Sbjct: 414 YNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQME 473

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
               + +  TY+ ++   CK  +L  A+ LL   L+ G+
Sbjct: 474 KVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGL 512



 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 167/329 (50%), Gaps = 11/329 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   +FNI++NGLCK    + A  +   ++  G    ++TYN LI G CK G+
Sbjct: 154 MIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGK 213

Query: 61  ---LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
              +  A  ILKE+   G  PN +T+  ++    +++     +++ + M R+G   +   
Sbjct: 214 IGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVT 273

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y ++I      G++ EAT   +QMV   ++ +I+++N L+N +CK   ++ A  L D+M 
Sbjct: 274 YNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMP 333

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           KQG   +  T+ ILID  CK  N++ A      M   G   ++  YNC++  L + G ++
Sbjct: 334 KQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLE 393

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            A N+   M+ K    D  TY+ ++ +LC    +  A +LL    + G++  +     ++
Sbjct: 394 AARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMI 453

Query: 294 DGLRHSGCRREAKKIQSKI----RMAKIS 318
           DG    G  R A  ++S++    R+A ++
Sbjct: 454 DGYCKEGNLRAALNLRSQMEKVGRLANVA 482



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T N +LNG CKN+    A  +F  + K G  P + TYNILI   CK   
Sbjct: 297 MVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDEN 356

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + + +   G  P+  TY  ++    R    +    ++S M  K    D   Y  
Sbjct: 357 MEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNI 416

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +    G +K+A   +++M   G++   ++YNT+I+ YCKEG L AA  L  +MEK G
Sbjct: 417 LIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVG 476

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
              +  T+ +LI G CK   ++ A   L  M + G   N   Y  + + + + G
Sbjct: 477 RLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 106/203 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+NI+++  CK+   ++A  ++R +   G  P++ TYN LI GLC+ G L  AR
Sbjct: 337 ITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAAR 396

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+       + ITY  ++       + K  L +L  M RKG       Y T+I  +
Sbjct: 397 NLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGY 456

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L+ A +   QM   G   ++ +YN LI  +CK+ KLE A  LL+EM ++G   ++
Sbjct: 457 CKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNR 516

Query: 186 YTHTILIDGLCKAGNIKGARLHL 208
            T+ I+ + + + G +     HL
Sbjct: 517 MTYEIVTEEMMEKGFVPDIEGHL 539



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 119/276 (43%), Gaps = 42/276 (15%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           +I++    KN  T      F+    +G    + + N L+ GL K G +    ++ KE+  
Sbjct: 97  DILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIR 156

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
               P  I++                                     VI    K+G+L +
Sbjct: 157 RRIEPTLISFN-----------------------------------IVINGLCKVGKLNK 181

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY---LLLDEMEKQGFECDKYTHTI 190
           A D +E M   GV  ++++YNTLI+ YCK GK+   Y    +L EM   G   ++ T  I
Sbjct: 182 AGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNI 241

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           LIDG CK  N+  A      MN+ G   N+  YN +++ L  +GK++ A  + + M    
Sbjct: 242 LIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSC 301

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              +  T++++++  CK K +  A +L     K G+
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGI 337



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 12/227 (5%)

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L   GDS  A N+I    ++    +N + +LG E        G          +++  V
Sbjct: 81  LLSVSGDSFCA-NSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLV 139

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G + +     ++M+   ++  ++S+N +IN  CK GKL  A  ++++M+ +G   +  
Sbjct: 140 KVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVI 199

Query: 187 THTILIDGLCKAGNIK---GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           T+  LIDG CK G I     A   L+ M   G   N   +N ++D   KD  +  A+ VF
Sbjct: 200 TYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVF 259

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSAS----KLLLSCLKSGV 282
             M  +    +  TY+S+++ LC   ++  A+    +++ SCLK  +
Sbjct: 260 AEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNI 306


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++ LCK +  ++A   F+ +++ G  P +VTY  L+ GLC + R   A  +
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++      PN ITY+ ++    +N K     E+   M R     D   Y +++     
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCL 307

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA    + MV+ G   D+VSYNTLIN +CK  ++E    L  EM ++G   +  T
Sbjct: 308 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVT 367

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G  +AG++  A+     M+  G   ++  YN ++  L  +G+++ A+ +FE M+
Sbjct: 368 YNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++  +CK  ++  A  L  S    G++        ++ GL   G   
Sbjct: 428 KREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLH 487

Query: 304 EAKKIQSKIR 313
           E + + +K++
Sbjct: 488 EVEALYTKMK 497



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 133/262 (50%), Gaps = 6/262 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++NGLC +    +A R+   + K    P ++TY+ L+    K G++  A+
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            + +E+      P+ +TY++++   C  +R  +   ++   M  KG   D   Y T+I  
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEAN-QMFDLMVSKGCLADVVSYNTLING 339

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K  R+++      +M   G+  + V+YNTLI  + + G ++ A     +M+  G   D
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +T+ IL+ GLC  G ++ A +  E M K   D ++  Y  ++  + K GK++ A ++F 
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 459

Query: 245 SMEVK----DSFTYSSMVHNLC 262
           S+ +K    D  TY++M+  LC
Sbjct: 460 SLSLKGLKPDIVTYTTMMSGLC 481



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 151/315 (47%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +L+ + K +  D  + + + ++  G   +L T+NI+I   C   ++  A  I
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+ +T  +++    R  +    + ++  M   GY  D   Y  +I +  K
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ +A D+ +++   G++ ++V+Y  L+N  C   +   A  LL +M K+    +  T
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+D   K G +  A+   E M ++  D ++  Y+ +V+ L    +ID A  +F+ M 
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMV 322

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D  +Y+++++  CKAKR+    KL     + G+         ++ G   +G   
Sbjct: 323 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 382

Query: 304 EAKKIQSKIRMAKIS 318
           +A++  S++    IS
Sbjct: 383 KAQEFFSQMDFFGIS 397



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 123/247 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP   T++ +L+   KN     A  +F  + +    P++VTY+ L+ GLC   R
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDR 310

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G   + ++Y T++    + ++ + G+++   M ++G   +   Y T
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F + G + +A ++  QM   G+  DI +YN L+   C  G+LE A ++ ++M+K+ 
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+T +I G+CK G ++ A      ++  G   ++  Y  ++  L   G +    
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVE 490

Query: 241 NVFESME 247
            ++  M+
Sbjct: 491 ALYTKMK 497



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 129/266 (48%), Gaps = 14/266 (5%)

Query: 20  LCKNRYTD----NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           L K R  D    +A+ +F  + K    P +V +N L+  + K  +      + K++   G
Sbjct: 56  LSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLG 115

Query: 76  HAPNAITYTTIMKC---CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
              +  T+  ++ C   CF   +  L L IL  M + GY  D     +++  F +  R+ 
Sbjct: 116 IRNDLYTFNIVINCFCCCF---QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   +++MV  G + DIV+YN +I+  CK  ++  A+    E+E++G   +  T+T L+
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           +GLC +     A   L  M K     N+  Y+ ++D   K+GK+  A  +FE M      
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 292

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D  TYSS+V+ LC   R+  A+++ 
Sbjct: 293 PDIVTYSSLVNGLCLHDRIDEANQMF 318


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++ GLC       AL +F  +   GF P +VTY  LI GLCK G    A  +
Sbjct: 124 PDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRL 183

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      P+ + YT+I+    ++R+      + S M  +G + D F Y +++ A   
Sbjct: 184 LRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCN 243

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  + QMV   +  D+V ++T+++  CKEGK+  A+ ++D M ++G E D  T
Sbjct: 244 LCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVT 303

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +T L+DG C    +  A    + M + GF  ++ +Y  +++   K  KID A+ +FE M 
Sbjct: 304 YTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMC 363

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               + D+ TY++++H LC   RL  A  L    +  G
Sbjct: 364 RKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARG 401



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 159/316 (50%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T  A+R+ R +++    P++V Y  +I  LCK  +
Sbjct: 152 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQ 211

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++   G +P+  TYT+++       ++K    +L+ M       D   + T
Sbjct: 212 VTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFST 271

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G++ EA + ++ M+  GV+ D+V+Y TL++ +C + +++ A  + D M ++G
Sbjct: 272 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 331

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D  ++T LI+G CK   I  A    E M +  +  + + YN ++  L   G++  AI
Sbjct: 332 FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAI 391

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M    ++ D  TYS ++ +LCK   L  A  LL +   S +         ++DG+
Sbjct: 392 ALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 451

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A+ + S +
Sbjct: 452 CRAGELEAARDLFSNL 467



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 140/310 (45%), Gaps = 9/310 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+ +++ LCK      A  +   + + G  P++VTY  L+ G C    
Sbjct: 257 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSE 316

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G AP+ I+YTT++    +  K    + +   M RK +  D   Y T
Sbjct: 317 MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 376

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++     +GRL++A     +MV  G   D+V+Y+ L++  CK   LE A  LL  +E   
Sbjct: 377 LMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASN 436

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D   + I+IDG+C+AG ++ AR     ++  G   ++  YN ++  L K G ++ A 
Sbjct: 437 LNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEAN 496

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV--- 293
            +F  M+      D  TY+++     +      A +LL   L  G     S    +V   
Sbjct: 497 KLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEML 556

Query: 294 --DGLRHSGC 301
             DGL  S C
Sbjct: 557 SDDGLDQSSC 566



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 122/278 (43%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L  + K ++    L +   +   G  P + T NILI   C   R+  A  +
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+  T+TT+++      K    L +   M  +G+  +   Y T+I    K
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G    A   +  M     Q D+V Y ++I+  CK+ ++  A+ L  +M  QG   D +T
Sbjct: 174 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 233

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+  LC     K     L  M       ++  ++ +VD L K+GK+  A  + + M 
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 293

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +    D  TY++++   C    +  A K+    ++ G
Sbjct: 294 QRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 331



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 6/274 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+AL  F  L      P +V +  L+  + K     T   +  ++   G  PN  T   +
Sbjct: 38  DDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNIL 97

Query: 87  MKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +   C  NR       +L+ + + G+  D   + T+I      G++ EA    ++M+ +G
Sbjct: 98  INSFCHLNR-VGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 156

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            Q ++V+Y TLIN  CK G   AA  LL  ME+   + D   +T +ID LCK   +  A 
Sbjct: 157 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 216

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                M   G   ++  Y  +V  L    +  H   +   M     + D   +S++V  L
Sbjct: 217 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 276

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           CK  ++  A +++   ++ GV         ++DG
Sbjct: 277 CKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG 310


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 152/307 (49%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF  ++NG+C       A+ ++  + + G  P++++YN LI GLC +G    A 
Sbjct: 159 IQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAV 218

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K++  +G  PN +TY TI+    ++R     ++ LS M  +G   D   Y +++   
Sbjct: 219 HVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGL 278

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +G+L EAT   ++M  +G + D+V+YN +I+   K+  +  A   L EM  QG   D 
Sbjct: 279 CCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDV 338

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T ++ GLC  G +  A    + M + G   ++ AYN I+D L KD  ++ A+     
Sbjct: 339 VTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSE 398

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       ++ TYS+++H  C   +L  A++L    +   V         +VDGL   G 
Sbjct: 399 MVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGM 458

Query: 302 RREAKKI 308
             EA+ +
Sbjct: 459 VSEARWV 465



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 156/314 (49%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+++ L K+R  ++A      +   G  P++VTY  ++ GLC  G+L  A  +
Sbjct: 301 PDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRL 360

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++   G  P+ + Y TI+    ++R     +E LS M  +G   +   Y T++  F  
Sbjct: 361 FKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCN 420

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L EAT   ++MV   V  + ++++ L++  C+EG +  A  + + M ++G E + YT
Sbjct: 421 LGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYT 480

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++G C    +  AR   E M   G   +L +YN +++      ++D A  +   M 
Sbjct: 481 YNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMS 540

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           VK    ++ TY++++  LC   RL  A +L      SG+         +++GL   G   
Sbjct: 541 VKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLD 600

Query: 304 EAKKIQSKIRMAKI 317
           EA K+   ++  K+
Sbjct: 601 EALKLFKSMKEKKL 614



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 149/278 (53%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++GLC     + A R+F+ ++++G  P++VTYNI+I  L K   
Sbjct: 259 MVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRL 318

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L E+ D G  P+ +TYTTI+       +    + +   M++KG   D   Y T
Sbjct: 319 VNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNT 378

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K   + +A +++ +MV  G+  + V+Y+T+++ +C  G+L+ A  L  EM  + 
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T +IL+DGLC+ G +  AR   E M + G + N+  YN +++      K++ A 
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            VFE M  K    D  +Y+ +++  C ++R+  A  LL
Sbjct: 499 KVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALL 536



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 155/307 (50%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +T    + NI++N LC+  + D A+ ++  + K G  P+++T+  LI G+C  G+++ A 
Sbjct: 124 VTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAV 183

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  SGH P+ I+Y T++     +    + + +   M++ G   +   Y T+I + 
Sbjct: 184 ELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSL 243

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   + +A D++ +MV  G+  D ++YN++++  C  G+L  A  L   ME+ G + D 
Sbjct: 244 CKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDV 303

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ I+ID L K   +  A   L  M   G   ++  Y  I+  L   G+++ AI +F+ 
Sbjct: 304 VTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKK 363

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME K    D   Y++++ +LCK + +  A + L   +  G+         ++ G  + G 
Sbjct: 364 MEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQ 423

Query: 302 RREAKKI 308
             EA ++
Sbjct: 424 LDEATQL 430



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 123/243 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P T TF+I+++GLC+      A  +F  + + G  P + TYN L+ G C   +
Sbjct: 434 MVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCK 493

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR + + +   G AP+  +Y  ++     +R+      +L+ M  K  T +   Y T
Sbjct: 494 MNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNT 553

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++     +GRL +A +  ++M + G+   +++Y+ L+N  CK G L+ A  L   M+++ 
Sbjct: 554 IMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKK 613

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D   +TILI+G+   G ++ A+     ++  G       YN ++  L K+G  D A 
Sbjct: 614 LEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAY 673

Query: 241 NVF 243
            +F
Sbjct: 674 ELF 676



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F   L  + K +     + +   +   G    + + NILI  LC+   +  A  +
Sbjct: 91  PSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSV 150

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G  P+ IT+TT++       K K+ +E+ + M R G+  D   Y T+I     
Sbjct: 151 WGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCN 210

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A    ++M  +G + ++V+YNT+I+  CK+  +  A   L EM  +G   D  T
Sbjct: 211 SGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAIT 270

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++ GLC  G +  A    + M + G   ++  YN I+D L KD  ++ A +    M 
Sbjct: 271 YNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMV 330

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                 D  TY++++H LC   +L  A +L     + G +    A   ++D L
Sbjct: 331 DQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSL 383



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 6/268 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++ +L+G C     D A ++F+ +     +P  +T++IL+ GLC+ G 
Sbjct: 399 MVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGM 458

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  ARW+ + + + G  PN  TY  +M   C R  K     ++   M  KG   D   Y 
Sbjct: 459 VSEARWVFETMTEKGVEPNIYTYNALMNGYCLRC-KMNEARKVFEIMVGKGCAPDLHSYN 517

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I  +    R+ +A   + QM    +  + V+YNT++   C  G+L  A  L  +M   
Sbjct: 518 ILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSS 577

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G      T++IL++GLCK G++  A    + M +   + ++  Y  +++ +   GK++ A
Sbjct: 578 GMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVA 637

Query: 240 INVFESMEV----KDSFTYSSMVHNLCK 263
             +F  +          TY+ M+  L K
Sbjct: 638 KGLFSKLSADGIQPPGRTYNVMIKGLLK 665



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 4/292 (1%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
            D+AL  F  + +    P +V +   +  + K  +  T  ++  ++   G      +   
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++ C  R       + +   M + G   D   + T+I      G++K A +   +MV  G
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            + D++SYNTLIN  C  G    A  +  +ME+ G + +  T+  +ID LCK   +  A 
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAM 253

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
             L  M   G   +   YN IV  L   G+++ A  +F+ ME      D  TY+ ++ +L
Sbjct: 254 DFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSL 313

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            K + +  A+  L   +  G+         ++ GL + G   EA ++  K+ 
Sbjct: 314 YKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKME 365


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 154/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++GLCK++  D A  ++  +   G  P+++TY  LI G C AG+L  A  +
Sbjct: 148 PDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGL 207

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      PN  TY T++    +  K K    +L+ M +KG   D   Y  ++  +  
Sbjct: 208 LNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCL 267

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G +++A      MV  GV  D+ SYN +IN  CK  +++ A  LL EM  +    D  T
Sbjct: 268 VGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVT 327

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLCK G I       + M+  G  +NL  YN ++D L K+  +D AI +F  M+
Sbjct: 328 YSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMK 387

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    + +TY++++  LCK  RL     L    L  G  I       ++ GL   G   
Sbjct: 388 ERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFD 447

Query: 304 EAKKIQSKIR 313
           EA  ++SK+ 
Sbjct: 448 EALAMKSKME 457



 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 140/266 (52%), Gaps = 4/266 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T   N ++ GLC       +L     +   GF  + V+Y IL+ GLCK G  R A  +
Sbjct: 78  PNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKL 137

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ + D    P+ + Y+TI+    +++      ++ S M  +G   D   Y T+I  F  
Sbjct: 138 LRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCL 197

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L EA   + +M+   +  +I +YNTLI+  CKEGK++ +  LL  M K+G + D   
Sbjct: 198 AGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVI 257

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           ++IL+DG C  G ++ A+     M + G + ++ +YN I++ L K  ++D A+N+   M 
Sbjct: 258 YSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREML 317

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPS 269
               + D+ TYSS++  LCK  R+ +
Sbjct: 318 HKNMIPDTVTYSSLIDGLCKLGRITT 343



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 145/286 (50%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   T+N +++ LCK      +  +   + K G  P++V Y+IL+ G C  G 
Sbjct: 211 MILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGE 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ I   +  +G  P+  +Y  I+    + ++    + +L  M  K    D   Y +
Sbjct: 271 VQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSS 330

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+GR+    D  ++M   G   ++V+YN+L++  CK   L+ A  L  +M+++G
Sbjct: 331 LIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERG 390

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +KYT+T LIDGLCK G +K  +   +++   G+  ++  Y  ++  L K+G  D A+
Sbjct: 391 IQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEAL 450

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME    + ++ T+  ++ +L +      A KLL   +  G+
Sbjct: 451 AMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGL 496



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L  L K ++    + + + ++  G VP+LVT +ILI   C  G++  +  +
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ PN I   T+MK      + K  L     +  +G+  D   Y  ++    K
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG  + A   +  +     + D+V Y+T+I+  CK+  ++ AY L  EM  +G   D  T
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT 187

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LI G C AG +  A   L  M     + N+  YN ++D L K+GK+  + N+   M 
Sbjct: 188 YTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMT 247

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            K    D   YS ++   C    +  A ++ L  +++GV     +   +++GL
Sbjct: 248 KKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGL 300



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 111/237 (46%), Gaps = 4/237 (1%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P  I +  I+    + + Y   + +   M+ KG   D      +I  F  +G++  + 
Sbjct: 6   HIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSF 65

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             + +++  G Q + +  NTL+   C +G+++ +    D++  QGF+ D+ ++ IL++GL
Sbjct: 66  SVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGL 125

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G  + A   L  +       ++  Y+ I+D L KD  +D A +++  M  +    D 
Sbjct: 126 CKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDV 185

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            TY++++   C A +L  A  LL   +   +         ++D L   G  +E+K +
Sbjct: 186 ITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNL 242



 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ +M++GLCK    D AL M   ++ +G +P  VT+ I+I+ L +      A  +L E+
Sbjct: 432 TYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEM 491

Query: 72  GDSGHAP 78
              G  P
Sbjct: 492 IAKGLLP 498


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 161/306 (52%), Gaps = 4/306 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   +++++++G C+       L++   LQ+ G  P   TYN +I  LCK GR+  A  
Sbjct: 284 VPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQ 343

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ + +    P+ + YTT++    ++    +  ++   MKRK    D   Y ++I    
Sbjct: 344 VLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLC 403

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G++ EA     +M++ G++ D V+Y  LI+ YCK G+++ A+ L ++M ++G   +  
Sbjct: 404 QAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVV 463

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L+DGLCK G +  A   L  M++ G   N+  YN +++ L K G I+ A+ + E M
Sbjct: 464 TYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM 523

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           ++     D+ TY++++   CK   +  A +LL   L  G++        +++G   SG  
Sbjct: 524 DLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGML 583

Query: 303 REAKKI 308
            + +++
Sbjct: 584 EDGERL 589



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 153/312 (49%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  M++GLC+      A ++F  +   G  P+ VTY  LI G CKAG ++ A 
Sbjct: 388 IVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAF 447

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++ + G  PN +TYT ++    +  +  +  E+L  M  KG   +   Y  +I   
Sbjct: 448 SLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGL 507

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +++A   ME+M   G   D ++Y T+++ YCK G++  A+ LL  M  +G +   
Sbjct: 508 CKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTI 567

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  +L++G C +G ++     +++M   G   N   +N ++ +      +   I +++ 
Sbjct: 568 VTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKG 627

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V D+ TY+ ++   CKA+ +  A  L    ++ G  +  ++  +++ G      
Sbjct: 628 MHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKK 687

Query: 302 RREAKKIQSKIR 313
             EA+K+  ++R
Sbjct: 688 FEEARKLFEEMR 699



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 141/270 (52%), Gaps = 6/270 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T ++NI+L+ LC+      A  +   ++  G VP++V+Y++++ G C+  +L     +++
Sbjct: 252 TVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLME 311

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           EL   G  PN  TY +I+    +  +     ++L  MK +    D   Y T+I+ F K G
Sbjct: 312 ELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSG 371

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +       ++M    +  D V+Y ++I+  C+ GK+  A  L  EM  +G + D+ T+T
Sbjct: 372 NVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYT 431

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            LIDG CKAG +K A  LH + + K G   N+  Y  +VD L K G++D A  +   M  
Sbjct: 432 ALIDGYCKAGEMKEAFSLHNQMVEK-GLTPNVVTYTALVDGLCKCGEVDIANELLHEMSE 490

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLL 274
           K    +  TY+++++ LCK   +  A KL+
Sbjct: 491 KGLQPNVCTYNALINGLCKVGNIEQAVKLM 520



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 148/291 (50%), Gaps = 4/291 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A R+FR   + G     V+YNI++  LC+ G+++ A  +L ++   G+ P+ ++Y+ I+ 
Sbjct: 236 AFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVD 295

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              +  +    L+++  ++RKG   + + Y ++I+   K GR+ EA   +  M    +  
Sbjct: 296 GYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFP 355

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D V Y TLI+ + K G +   Y L DEM+++    D  T+T +I GLC+AG +  AR   
Sbjct: 356 DNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLF 415

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M   G   +   Y  ++D   K G++  A ++   M  K    +  TY+++V  LCK 
Sbjct: 416 SEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKC 475

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
             +  A++LL    + G++       A+++GL   G   +A K+  ++ +A
Sbjct: 476 GEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLA 526



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 2/247 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+  +++GLCK    D A  +   + + G  P + TYN LI GLCK G 
Sbjct: 453 MVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGN 512

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +++E+  +G  P+ ITYTTIM    +  +     E+L  M  KG       +  
Sbjct: 513 IEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNV 572

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   G L++    ++ M+  G+  +  ++N+L+  YC    + A   +   M  QG
Sbjct: 573 LMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQG 632

Query: 181 FECDKYTHTILIDGLCKAGNIKGAR-LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D  T+ ILI G CKA N+K A  LH E + K GF     +YN ++    K  K + A
Sbjct: 633 VVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEK-GFSLTAASYNSLIKGFYKRKKFEEA 691

Query: 240 INVFESM 246
             +FE M
Sbjct: 692 RKLFEEM 698



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++ LCK      A ++ R ++     P+ V Y  LI G  K+G +    
Sbjct: 318 LKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEY 377

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+      P+ +TYT+++    +  K     ++ S M  KG   D   Y  +I  +
Sbjct: 378 KLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGY 437

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +KEA     QMV  G+  ++V+Y  L++  CK G+++ A  LL EM ++G + + 
Sbjct: 438 CKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNV 497

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GLCK GNI+ A   +E M+  GF  +   Y  I+D   K G++  A  +   
Sbjct: 498 CTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRI 557

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M  K       T++ +++  C +  L    +L+   L  G+
Sbjct: 558 MLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGI 598



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 111/237 (46%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NGLCK    + A+++   +   GF P+ +TY  ++   CK G +  A 
Sbjct: 493 LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAH 552

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ + D G  P  +T+  +M     +   + G  ++  M  KG   +   + +++  +
Sbjct: 553 ELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQY 612

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                ++   +  + M   GV  D  +YN LI  +CK   ++ A+ L  EM ++GF    
Sbjct: 613 CIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTA 672

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            ++  LI G  K    + AR   E M   GF +  E Y+  VD   ++G  ++ + +
Sbjct: 673 ASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLEL 729



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 5/290 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA-GRLRTARWILKE 70
            F++    L +      A ++F  L  +G +  + + N+ +  L  +   +RTA  + +E
Sbjct: 183 VFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFRE 242

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
             + G   N ++Y  I+    +  K K    +L  M+ +G   D   Y  ++  + ++ +
Sbjct: 243 YSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQ 302

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L +    ME++   G++ +  +YN++I+  CK G++  A  +L  M+ Q    D   +T 
Sbjct: 303 LGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTT 362

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI G  K+GN+       + M +     +   Y  ++  L + GK+  A  +F  M  K 
Sbjct: 363 LISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKG 422

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              D  TY++++   CKA  +  A  L    ++ G+        A+VDGL
Sbjct: 423 LKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL 472



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TFN+++NG C +   ++  R+ + +   G +P   T+N L+K  C    
Sbjct: 558 MLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNN 617

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R    I K +   G  P+  TY  ++K   + R  K    +   M  KG++     Y +
Sbjct: 618 MRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNS 677

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           +I  F K  + +EA    E+M T G   +   Y+  +++  +EG  E    L DE
Sbjct: 678 LIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDE 732



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
           R+  EY +++G   N  +YN I+  L + GK+  A ++   ME    V D  +YS +V  
Sbjct: 238 RVFREY-SEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDG 296

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            C+ ++L    KL+    + G++  +    +++  L  +G   EA+++   ++  +I
Sbjct: 297 YCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRI 353


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 156/311 (50%), Gaps = 7/311 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP   TF  ++NG C     D+ALRM   +       +L  +  LI  L K  RL+ A+
Sbjct: 388 FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAK 447

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+  +G  PN ITYT+I+    ++ K  + LE+L  M+R G   + + Y +++   
Sbjct: 448 ELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGL 507

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK  +L +A   + +M  DG+  ++++Y TL+   C E   + A+ L + ME+ G + D+
Sbjct: 508 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 567

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + + +L D LCKAG  + A     ++ + G       Y  ++D   K G  D A  + E 
Sbjct: 568 HAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIER 624

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       DS+TYS ++H LCK KRL  A  +L      G++    A   ++D +   G 
Sbjct: 625 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684

Query: 302 RREAKKIQSKI 312
              AK++ +++
Sbjct: 685 HDHAKRMYNEM 695



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 145/299 (48%), Gaps = 7/299 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK+   D AL + + +++ G  P   TYN L+ GL K  +L  A 
Sbjct: 458 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 517

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G  PN ITYTT+++       +     +   M++ G   D   Y  +  A 
Sbjct: 518 ALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDAL 577

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR +EA  +   +V  GV L  V Y TLI+ + K G  + A  L++ M  +G   D 
Sbjct: 578 CKAGRAEEAYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDS 634

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+++L+  LCK   +  A   L+ M+  G    + AY  ++D + ++GK DHA  ++  
Sbjct: 635 YTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNE 694

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M        + TY+  +++ CK  RL  A  L+L   + GV         ++DG  H G
Sbjct: 695 MTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMG 753



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 132/322 (40%), Gaps = 54/322 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA- 64
           + P   T+  +L G C     DNA R+F  ++++G  P+   Y +L   LCKAGR   A 
Sbjct: 528 IIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAY 587

Query: 65  -------------------------------RWILKELGDSGHAPNAITYTTIMKCCFRN 93
                                            +++ + D G  P++ TY+ ++    + 
Sbjct: 588 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 647

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           ++    L IL  M  +G     F Y  +I   ++ G+   A     +M + G +    +Y
Sbjct: 648 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 707

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
              IN YCKEG+LE A  L+ +ME++G   D  T+ ILIDG    G I  A   L+ M  
Sbjct: 708 TVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 767

Query: 214 IGFDSNLEAYNCIVDRLGKDG----------------KIDHAINVFESMEVKDSF----- 252
              + N   Y  ++  L K                  ++D    + E M VK        
Sbjct: 768 ASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM-VKHGLNPTVT 826

Query: 253 TYSSMVHNLCKAKRLPSASKLL 274
           TYSS++   CKA RL  A  LL
Sbjct: 827 TYSSLIAGFCKAGRLEEACLLL 848



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 5/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+N M+   CK      A R FR L + G  PE  T N L+ G C+ G LR A 
Sbjct: 179 LLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKAC 238

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+   +   G   N  +YT +++     +  +  L +   MKR G + +   +  +I+  
Sbjct: 239 WLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGL 298

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ +A    + M  +GV   +++YN +I  Y K G++  A  + + MEK G   D 
Sbjct: 299 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 358

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LI GLC     +   L L    K GF   +  +  +++      K D A+ +   
Sbjct: 359 WTYNTLIYGLCDQKTEEAEEL-LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNK 417

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M       D   +  ++++L K  RL  A +LL     +G+        +++DG   SG
Sbjct: 418 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG 476



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 40/273 (14%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N  L  L +   T+   R++  L + G +P+ VTYN +IK  CK G L TA    + L 
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 210

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  P   T   ++                             GYC       + G L+
Sbjct: 211 EGGLEPETFTCNALV----------------------------LGYC-------RTGELR 235

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A      M   G Q +  SY  LI   C    +  A +L   M++ G   +    T LI
Sbjct: 236 KACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLI 295

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
            GLCK+G +  ARL  + M + G   ++  YN ++    K G+++ A+ + E ME     
Sbjct: 296 SGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 355

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D +TY+++++ LC  K    A +LL + +K G
Sbjct: 356 PDDWTYNTLIYGLCDQKT-EEAEELLNNAVKEG 387



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 51/294 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    TP + T++++L+ LCK +  + AL +   +   G    +  Y ILI  + + G+
Sbjct: 625 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +  E+  SGH P+A TYT  +    +  + +   +++  M+R+G   D   Y  
Sbjct: 685 HDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNI 744

Query: 121 VI----------AAFVKIGRLKEAT----------------------------------- 135
           +I           AF  + R+  A+                                   
Sbjct: 745 LIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLI 804

Query: 136 ------DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
                   +E+MV  G+   + +Y++LI  +CK G+LE A LLLD M  +G   ++  +T
Sbjct: 805 ELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYT 864

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +LI   C     + A   +  M++ GF   LE+Y  +V  L  +G  +   ++F
Sbjct: 865 LLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 918



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 16/256 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ + +N  CK    ++A  +   +++ G  P++VTYNILI G    G +  A   
Sbjct: 702 PSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFST 761

Query: 68  LKELGDSGHAPNAITYTTIMKCCFR-NRKY---------------KLGLEILSAMKRKGY 111
           LK +  +   PN  TY  ++K   + N  Y                +  ++L  M + G 
Sbjct: 762 LKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGL 821

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
                 Y ++IA F K GRL+EA   ++ M   G+  +   Y  LI   C     E A  
Sbjct: 822 NPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALS 881

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
            +  M + GF+    ++ +L+ GLC  G+ +  +     + ++G++ +  A+  + D L 
Sbjct: 882 FVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLL 941

Query: 232 KDGKIDHAINVFESME 247
           K G +D    +   ME
Sbjct: 942 KAGYVDICFQMLSIME 957



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 35/187 (18%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D   ++   + KHG  P + TY+ LI G CKAGRL  A  +L  +   G +PN   YT +
Sbjct: 807 DITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 866

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +KCC   + ++  L  +S M   G+                                   
Sbjct: 867 IKCCCDTKFFEKALSFVSIMSECGF----------------------------------- 891

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q  + SY  L+   C EG  E    L  ++ + G+  D+    IL DGL KAG +     
Sbjct: 892 QPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQ 951

Query: 207 HLEYMNK 213
            L  M K
Sbjct: 952 MLSIMEK 958



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 2   ICGD-LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +CG  L+P    + +++   C  ++ + AL     + + GF P+L +Y +L+ GLC  G 
Sbjct: 851 MCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGD 910

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
               + +  +L + G+  + + +  +     +     +  ++LS M+++
Sbjct: 911 FEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKR 959


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 148/286 (51%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN +++G CK+     A + F  +QK G  P +VTYN LI GLC  G+
Sbjct: 264 MLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGK 323

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++   G  PN +TY  ++    + +  K   ++   + ++    +   + T
Sbjct: 324 LEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNT 383

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+ K G ++E       M+ +G+  ++ +YN LI   C++  L+AA  LL+EME +G
Sbjct: 384 MIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKG 443

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+ ILIDGLCK    + A   L  M  +G   N   YN ++D    +GK+  A+
Sbjct: 444 LKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAAL 503

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           NV   ME +    +  TY+ ++   CK  +L +A+ LL   L+ G+
Sbjct: 504 NVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGL 549



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 150/309 (48%), Gaps = 7/309 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK---AGRLRTARWIL 68
           TFNI +NGLC+    + A      ++  G  P +VTYN L+ G CK   AG++  A   +
Sbjct: 202 TFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFM 261

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           KE+  +   PN +T+ T++    ++       +    M+++G   +   Y ++I      
Sbjct: 262 KEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNN 321

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G+L+EA D  ++MV  G++ +IV+YN LIN +CK+  ++ A  + D++ KQ    +  T 
Sbjct: 322 GKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITF 381

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
             +ID  CK G ++        M   G   N+  YNC++  L +   +  A  +   ME 
Sbjct: 382 NTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMEN 441

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           K    D  TY+ ++  LCK  +  +A KLL      G++        ++DG    G  + 
Sbjct: 442 KGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKA 501

Query: 305 AKKIQSKIR 313
           A  +++++ 
Sbjct: 502 ALNVRTRME 510



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 113/226 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++NG CK +    A ++F  + K   VP ++T+N +I   CK G 
Sbjct: 334 MVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGM 393

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +   + D G  PN  TY  ++    R +  +   E+L+ M+ KG   D   Y  
Sbjct: 394 MEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNI 453

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  + + A   + +M   G++ + V+YNTL++ YC EGKL+AA  +   MEK+ 
Sbjct: 454 LIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKER 513

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
            + +  T+ +LI G CK   ++ A   L  M + G + N   Y+ +
Sbjct: 514 KQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 11/314 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT C    N +L+ L K     +   +++ + K      L T+NI I GLC+AG+L  A 
Sbjct: 165 LTSC----NPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAE 220

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKL--GLEILSAMKRKGYTFDGFGYCTVI 122
             ++++   G +PN +TY T++   C R    K+      +  M       +   + T+I
Sbjct: 221 DAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLI 280

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K   +  A    E+M   G++ +IV+YN+LIN  C  GKLE A  L D+M   G +
Sbjct: 281 DGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLK 340

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+  LI+G CK   +K A    + ++K     N+  +N ++D   K+G ++   ++
Sbjct: 341 PNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSL 400

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
             SM     + +  TY+ ++  LC+ + L +A +LL      G++        ++DGL  
Sbjct: 401 CSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCK 460

Query: 299 SGCRREAKKIQSKI 312
           +   R A+K+ +++
Sbjct: 461 NDKSRNAEKLLNEM 474



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 42/225 (18%)

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           +N +     E  +  K  G+         +++A VK  ++ +     ++M+   +  ++ 
Sbjct: 142 KNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLN 201

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG------------ 199
           ++N  IN  C+ GKL  A   +++M+  G   +  T+  L+DG CK G            
Sbjct: 202 TFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFM 261

Query: 200 --------------------------NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
                                     N+  A+   E M K G   N+  YN +++ L  +
Sbjct: 262 KEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNN 321

Query: 234 GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           GK++ AI++++ M       +  TY+++++  CK K +  A+K+ 
Sbjct: 322 GKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVF 366



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 7/199 (3%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A+VK   L  A +   +    G +L + S N L++   KE K+     +  EM K+ 
Sbjct: 136 LVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRR 195

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKID 237
              +  T  I I+GLC+AG +  A   +E M   G   N+  YN +VD   + G  GK+ 
Sbjct: 196 IHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMY 255

Query: 238 HAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            A    + M       +  T+++++   CK + + +A K      K G++       +++
Sbjct: 256 KAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLI 315

Query: 294 DGLRHSGCRREAKKIQSKI 312
           +GL ++G   EA  +  K+
Sbjct: 316 NGLCNNGKLEEAIDLWDKM 334


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 156/311 (50%), Gaps = 7/311 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP   TF  ++NG C     D+ALRM   +       +L  +  LI  L K  RL+ A+
Sbjct: 388 FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAK 447

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+  +G  PN ITYT+I+    ++ K  + LE+L  M+R G   + + Y +++   
Sbjct: 448 ELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGL 507

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK  +L +A   + +M  DG+  ++++Y TL+   C E   + A+ L + ME+ G + D+
Sbjct: 508 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 567

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + + +L D LCKAG  + A     ++ + G       Y  ++D   K G  D A  + E 
Sbjct: 568 HAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIER 624

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       DS+TYS ++H LCK KRL  A  +L      G++    A   ++D +   G 
Sbjct: 625 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684

Query: 302 RREAKKIQSKI 312
              AK++ +++
Sbjct: 685 HDHAKRMYNEM 695



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 145/299 (48%), Gaps = 7/299 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK+   D AL + + +++ G  P   TYN L+ GL K  +L  A 
Sbjct: 458 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 517

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G  PN ITYTT+++       +     +   M++ G   D   Y  +  A 
Sbjct: 518 ALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDAL 577

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR +EA  +   +V  GV L  V Y TLI+ + K G  + A  L++ M  +G   D 
Sbjct: 578 CKAGRAEEAYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDS 634

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+++L+  LCK   +  A   L+ M+  G    + AY  ++D + ++GK DHA  ++  
Sbjct: 635 YTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNE 694

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M        + TY+  +++ CK  RL  A  L+L   + GV         ++DG  H G
Sbjct: 695 MTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMG 753



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 132/322 (40%), Gaps = 54/322 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA- 64
           + P   T+  +L G C     DNA R+F  ++++G  P+   Y +L   LCKAGR   A 
Sbjct: 528 IIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAY 587

Query: 65  -------------------------------RWILKELGDSGHAPNAITYTTIMKCCFRN 93
                                            +++ + D G  P++ TY+ ++    + 
Sbjct: 588 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 647

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           ++    L IL  M  +G     F Y  +I   ++ G+   A     +M + G +    +Y
Sbjct: 648 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 707

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
              IN YCKEG+LE A  L+ +ME++G   D  T+ ILIDG    G I  A   L+ M  
Sbjct: 708 TVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 767

Query: 214 IGFDSNLEAYNCIVDRLGKDG----------------KIDHAINVFESMEVKDSF----- 252
              + N   Y  ++  L K                  ++D    + E M VK        
Sbjct: 768 ASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM-VKHGLNPTVT 826

Query: 253 TYSSMVHNLCKAKRLPSASKLL 274
           TYSS++   CKA RL  A  LL
Sbjct: 827 TYSSLIAGFCKAGRLEEACLLL 848



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 5/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+N M+   CK      A R FR L + G  PE  T N L+ G C+ G LR A 
Sbjct: 179 LLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKAC 238

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+   +   G   N  +YT +++     +  +  L +   MKR G + +   +  +I+  
Sbjct: 239 WLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGL 298

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ +A    + M  +GV   +++YN +I  Y K G++  A  + + MEK G   D 
Sbjct: 299 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 358

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LI GLC     +   L L    K GF   +  +  +++      K D A+ +   
Sbjct: 359 WTYNTLIYGLCDQKTEEAEEL-LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNK 417

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M       D   +  ++++L K  RL  A +LL     +G+        +++DG   SG
Sbjct: 418 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG 476



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 136/318 (42%), Gaps = 40/318 (12%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L P T T N ++ G C+      A  +F  +   G      +Y ILI+GLC+A  +R 
Sbjct: 212 GGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVRE 271

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +   +   G +PN   +T ++    ++ +      +  AM + G       Y  +I 
Sbjct: 272 ALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIV 331

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            + K+GR+ +A    E M  +G   D  +YNTLI   C + K E A  LL+   K+GF  
Sbjct: 332 GYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTP 390

Query: 184 DKYTHTILIDGLCKAGNIKGA------------RLHLEYMNKI----------------- 214
              T T LI+G C A     A            +L L+   K+                 
Sbjct: 391 TVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELL 450

Query: 215 ------GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKA 264
                 G   N+  Y  I+D   K GK+D A+ V + ME      +++TY+S+++ L K 
Sbjct: 451 NEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKD 510

Query: 265 KRLPSASKLLLSCLKSGV 282
           K+L  A  LL    K G+
Sbjct: 511 KKLHKAMALLTKMQKDGI 528



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 119/273 (43%), Gaps = 40/273 (14%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N  L  L +   T+   R++  L + G +P+ VTYN +IK  CK G L TA    + L 
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLL 210

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  P   T   ++                             GYC       + G L+
Sbjct: 211 EGGLEPETFTCNALV----------------------------LGYC-------RTGELR 235

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A      M   G Q +  SY  LI   C+   +  A +L   M++ G   +    T LI
Sbjct: 236 KACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLI 295

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
            GLCK+G +  ARL  + M + G   ++  YN ++    K G+++ A+ + E ME     
Sbjct: 296 SGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 355

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D +TY+++++ LC  K    A +LL + +K G
Sbjct: 356 PDDWTYNTLIYGLCDQKT-EEAEELLNNAVKEG 387



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 51/294 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    TP + T++++L+ LCK +  + AL +   +   G    +  Y ILI  + + G+
Sbjct: 625 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +  E+  SGH P+A TYT  +    +  + +   +++  M+R+G   D   Y  
Sbjct: 685 HDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNI 744

Query: 121 VI----------AAFVKIGRLKEAT----------------------------------- 135
           +I           AF  + R+  A+                                   
Sbjct: 745 LIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLI 804

Query: 136 ------DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
                   +E+MV  G+   + +Y++LI  +CK G+LE A LLLD M  +G   ++  +T
Sbjct: 805 ELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYT 864

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +LI   C     + A   +  M++ GF   LE+Y  +V  L  +G  +   ++F
Sbjct: 865 LLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 918



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 16/256 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ + +N  CK    ++A  +   +++ G  P++VTYNILI G    G +  A   
Sbjct: 702 PSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFST 761

Query: 68  LKELGDSGHAPNAITYTTIMKCCFR-NRKY---------------KLGLEILSAMKRKGY 111
           LK +  +   PN  TY  ++K   + N  Y                +  ++L  M + G 
Sbjct: 762 LKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGL 821

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
                 Y ++IA F K GRL+EA   ++ M   G+  +   Y  LI   C     E A  
Sbjct: 822 NPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALS 881

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
            +  M + GF+    ++ +L+ GLC  G+ +  +     + ++G++ +  A+  + D L 
Sbjct: 882 FVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLL 941

Query: 232 KDGKIDHAINVFESME 247
           K G +D    +   ME
Sbjct: 942 KAGYVDICFQMLSIME 957



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 35/187 (18%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D   ++   + KHG  P + TY+ LI G CKAGRL  A  +L  +   G +PN   YT +
Sbjct: 807 DITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 866

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +KCC   + ++  L  +S M   G+                                   
Sbjct: 867 IKCCCDTKFFEKALSFVSIMSECGF----------------------------------- 891

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q  + SY  L+   C EG  E    L  ++ + G+  D+    IL DGL KAG +     
Sbjct: 892 QPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQ 951

Query: 207 HLEYMNK 213
            L  M K
Sbjct: 952 MLSIMEK 958



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 2   ICGD-LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +CG  L+P    + +++   C  ++ + AL     + + GF P+L +Y +L+ GLC  G 
Sbjct: 851 MCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGD 910

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
               + +  +L + G+  + + +  +     +     +  ++LS M+++
Sbjct: 911 FEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKR 959


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 19/304 (6%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI++ GLC+N   D A++MF  + +    P+  +Y ILI GL KAG+L  AR + ++L 
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+ + YT+++        +    E+ + M R+G       Y  +I A  K G L+
Sbjct: 351 HSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLE 410

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D +++M+ DG   D+V+YNT+++  CK  ++E A LL +EME+ G   ++ +H  +I
Sbjct: 411 EACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTII 470

Query: 193 DGLCKAGNIKGA----------RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            GLC+   I  A          RL L+ M   G   ++  Y+ ++  L    ++D A ++
Sbjct: 471 LGLCQQSKIDQACQRGKLDEAFRL-LKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 529

Query: 243 FESM---EVKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            E M   + K +  T ++++H LCKA R+  A ++L + + SG    +S      + L H
Sbjct: 530 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG----QSPDVVTYNTLVH 585

Query: 299 SGCR 302
             CR
Sbjct: 586 GHCR 589



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 149/289 (51%), Gaps = 13/289 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP T  +  +++GLC     D+A  +F  + + G  P  VTYN++I   CK G L  A 
Sbjct: 354 VTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEAC 413

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++K++ + GH P+ +TY T+M    ++ + +  L + + M+R G T +   + T+I   
Sbjct: 414 DLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGL 473

Query: 126 VKI---------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            +          G+L EA   +++M  DG   D+V+Y+TLI+  C   +++ A  LL++M
Sbjct: 474 CQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDM 533

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            K+  +    T   LI GLCKAG IK AR  L+ M   G   ++  YN +V    + G+ 
Sbjct: 534 VKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQT 593

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           + A  +   M  +    +  TY+++V  LCKA RLP A  +      SG
Sbjct: 594 ERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 642



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 151/355 (42%), Gaps = 54/355 (15%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC  T N++L G C     D A  + R +      P+ V+Y  ++ GLCKAGR+  A  +
Sbjct: 210 PCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRL 269

Query: 68  L--KELGDSGHAPNAIT----YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
              +EL  S  + ++      Y  ++    +N +    +++   M  +  + D + Y  +
Sbjct: 270 FGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGIL 329

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    K G+L +A +  ++++  GV    V+Y +LI+  C     + A  L  +M ++G 
Sbjct: 330 IDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGC 389

Query: 182 ECDKYTHTILI-----------------------------------DGLCKAGNIKGARL 206
                T+ ++I                                   DGLCK+  ++ A L
Sbjct: 390 PPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALL 449

Query: 207 HLEYMNKIGFDSNLEAYNCI---------VDRLGKDGKIDHAINVFESM----EVKDSFT 253
               M ++G   N  ++N I         +D+  + GK+D A  + + M     V D  T
Sbjct: 450 LFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVT 509

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           YS+++  LC   R+  A  LL   +K   +     Q  ++ GL  +G  +EA+++
Sbjct: 510 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 564



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 15/321 (4%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNA---------LRMFRGLQKHGFVPELVTYNILIKGLCK 57
           TP   + N ++ GLC+    D A          R+ + +   G VP++VTY+ LI GLC 
Sbjct: 460 TPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 519

Query: 58  AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
             R+  AR +L+++      P  +T  T++    +  + K   E+L AM   G + D   
Sbjct: 520 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 579

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y T++    + G+ + A + +  MV  G+  ++V+Y  L++  CK  +L  A  +  +M+
Sbjct: 580 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 639

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
             G   + +T+T LI G C AG + G       M   G   +   Y  +   L K G+  
Sbjct: 640 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 699

Query: 238 HAINVF----ESM--EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
            A+ +     ES+  E      Y   V  L +A ++  A   +   ++ G         +
Sbjct: 700 RALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCAS 759

Query: 292 VVDGLRHSGCRREAKKIQSKI 312
           +V GL  SG   EA+ +  +I
Sbjct: 760 LVAGLCKSGQGGEARAVLEEI 780



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 146/336 (43%), Gaps = 54/336 (16%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +N++++ L K + T+   +M + +   G  P+  T+  ++ GLCKAG++  A  
Sbjct: 41  SPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAEL 100

Query: 67  ILKELGDSGHAPNAITYTTIM-KCCFR---NRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           ++ E+      P   T + +  + C R    R ++L LEI+       Y         V+
Sbjct: 101 VMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQL-LEIMPVANSSAYNI-------VV 152

Query: 123 AAFVKIGRLKEATDYMEQM------------------VTDGVQLD--------------I 150
            A  K  R+ +A +    M                  + D  ++D              +
Sbjct: 153 VALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCL 212

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK------GA 204
           V+ N L+  +C  G+++ A  LL  M  +    D+ ++  ++DGLCKAG ++      G 
Sbjct: 213 VTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGD 272

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
           R      +      +L  YN ++  L ++ +ID A+ +FE M  +    DS++Y  ++  
Sbjct: 273 RELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDG 332

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           L KA +L  A  L    L SGV     A  +++ GL
Sbjct: 333 LAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGL 368



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 6/272 (2%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           + G  P  + +  +I+G C  GR   A  I   L +  H+P    Y  ++    + ++ +
Sbjct: 3   QQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFS-LMEECHSPYPDVYNVLIDSLSKRQETE 61

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
              +++  M  +G   D F + T++    K G++ EA   M++M +  +     + + L 
Sbjct: 62  AVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLA 121

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +  C  G +E A+ LL+ M       +   + I++  LCKA  +  A      M++    
Sbjct: 122 HELCLRGSMERAFQLLEIMPVA----NSSAYNIVVVALCKAARVDDALELARTMSEKRIP 177

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVF-ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
               + + ++  L   G+ID A+ V+ E+       T + ++   C   ++  A +LL +
Sbjct: 178 LAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRA 237

Query: 277 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
                    + +   V+DGL  +G   EA ++
Sbjct: 238 MPDEECAPDEVSYCTVLDGLCKAGRVEEAVRL 269


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 156/311 (50%), Gaps = 7/311 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP   TF  ++NG C     D+ALRM   +       +L  +  LI  L K  RL+ A+
Sbjct: 273 FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAK 332

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+  +G  PN ITYT+I+    ++ K  + LE+L  M+R G   + + Y +++   
Sbjct: 333 ELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGL 392

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK  +L +A   + +M  DG+  ++++Y TL+   C E   + A+ L + ME+ G + D+
Sbjct: 393 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 452

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + + +L D LCKAG  + A     ++ + G       Y  ++D   K G  D A  + E 
Sbjct: 453 HAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIER 509

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       DS+TYS ++H LCK KRL  A  +L      G++    A   ++D +   G 
Sbjct: 510 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 569

Query: 302 RREAKKIQSKI 312
              AK++ +++
Sbjct: 570 HDHAKRMYNEM 580



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 145/299 (48%), Gaps = 7/299 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK+   D AL + + +++ G  P   TYN L+ GL K  +L  A 
Sbjct: 343 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 402

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G  PN ITYTT+++       +     +   M++ G   D   Y  +  A 
Sbjct: 403 ALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDAL 462

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR +EA  +   +V  GV L  V Y TLI+ + K G  + A  L++ M  +G   D 
Sbjct: 463 CKAGRAEEAYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDS 519

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+++L+  LCK   +  A   L+ M+  G    + AY  ++D + ++GK DHA  ++  
Sbjct: 520 YTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNE 579

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M        + TY+  +++ CK  RL  A  L+L   + GV         ++DG  H G
Sbjct: 580 MTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMG 638



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 132/322 (40%), Gaps = 54/322 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA- 64
           + P   T+  +L G C     DNA R+F  ++++G  P+   Y +L   LCKAGR   A 
Sbjct: 413 IIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAY 472

Query: 65  -------------------------------RWILKELGDSGHAPNAITYTTIMKCCFRN 93
                                            +++ + D G  P++ TY+ ++    + 
Sbjct: 473 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 532

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           ++    L IL  M  +G     F Y  +I   ++ G+   A     +M + G +    +Y
Sbjct: 533 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 592

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
              IN YCKEG+LE A  L+ +ME++G   D  T+ ILIDG    G I  A   L+ M  
Sbjct: 593 TVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 652

Query: 214 IGFDSNLEAYNCIVDRLGKDG----------------KIDHAINVFESMEVKDSF----- 252
              + N   Y  ++  L K                  ++D    + E M VK        
Sbjct: 653 ASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM-VKHGLNPTVT 711

Query: 253 TYSSMVHNLCKAKRLPSASKLL 274
           TYSS++   CKA RL  A  LL
Sbjct: 712 TYSSLIAGFCKAGRLEEACLLL 733



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 5/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+N M+   CK      A R FR L + G  PE  T N L+ G C+ G LR A 
Sbjct: 64  LLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKAC 123

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+   +   G   N  +YT +++     +  +  L +   MKR G + +   +  +I+  
Sbjct: 124 WLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGL 183

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ +A    + M  +GV   +++YN +I  Y K G++  A  + + MEK G   D 
Sbjct: 184 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 243

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LI GLC     +   L L    K GF   +  +  +++      K D A+ +   
Sbjct: 244 WTYNTLIYGLCDQKTEEAEEL-LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNK 302

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M       D   +  ++++L K  RL  A +LL     +G+        +++DG   SG
Sbjct: 303 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG 361



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 40/273 (14%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N  L  L +   T+   R++  L + G +P+ VTYN +IK  CK G L TA    + L 
Sbjct: 36  YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 95

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  P   T   ++                             GYC       + G L+
Sbjct: 96  EGGLEPETFTCNALV----------------------------LGYC-------RTGELR 120

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A      M   G Q +  SY  LI   C    +  A +L   M++ G   +    T LI
Sbjct: 121 KACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLI 180

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
            GLCK+G +  ARL  + M + G   ++  YN ++    K G+++ A+ + E ME     
Sbjct: 181 SGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 240

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D +TY+++++ LC  K    A +LL + +K G
Sbjct: 241 PDDWTYNTLIYGLCDQKT-EEAEELLNNAVKEG 272



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 51/294 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    TP + T++++L+ LCK +  + AL +   +   G    +  Y ILI  + + G+
Sbjct: 510 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 569

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +  E+  SGH P+A TYT  +    +  + +   +++  M+R+G   D   Y  
Sbjct: 570 HDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNI 629

Query: 121 VIA----------AFVKIGRLKEAT----------------------------------- 135
           +I           AF  + R+  A+                                   
Sbjct: 630 LIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLI 689

Query: 136 ------DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
                   +E+MV  G+   + +Y++LI  +CK G+LE A LLLD M  +G   ++  +T
Sbjct: 690 ELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYT 749

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +LI   C     + A   +  M++ GF   LE+Y  +V  L  +G  +   ++F
Sbjct: 750 LLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLF 803



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 16/256 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ + +N  CK    ++A  +   +++ G  P++VTYNILI G    G +  A   
Sbjct: 587 PSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFST 646

Query: 68  LKELGDSGHAPNAITYTTIMKCCFR-NRKY---------------KLGLEILSAMKRKGY 111
           LK +  +   PN  TY  ++K   + N  Y                +  ++L  M + G 
Sbjct: 647 LKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGL 706

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
                 Y ++IA F K GRL+EA   ++ M   G+  +   Y  LI   C     E A  
Sbjct: 707 NPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALS 766

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
            +  M + GF+    ++ +L+ GLC  G+ +  +     + ++G++ +  A+  + D L 
Sbjct: 767 FVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLL 826

Query: 232 KDGKIDHAINVFESME 247
           K G +D    +   ME
Sbjct: 827 KAGYVDICFQMLSIME 842



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 35/187 (18%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D   ++   + KHG  P + TY+ LI G CKAGRL  A  +L  +   G +PN   YT +
Sbjct: 692 DITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 751

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +KCC   + ++  L  +S M   G+                                   
Sbjct: 752 IKCCCDTKFFEKALSFVSIMSECGF----------------------------------- 776

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q  + SY  L+   C EG  E    L  ++ + G+  D+    IL DGL KAG +     
Sbjct: 777 QPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQ 836

Query: 207 HLEYMNK 213
            L  M K
Sbjct: 837 MLSIMEK 843



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 2   ICGD-LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +CG  L+P    + +++   C  ++ + AL     + + GF P+L +Y +L+ GLC  G 
Sbjct: 736 MCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGD 795

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
               + +  +L + G+  + + +  +     +     +  ++LS M+++
Sbjct: 796 FEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKR 844


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 159/317 (50%), Gaps = 9/317 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGLCK    D A  +F  + K    PE+V +N LI G    GR
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGR 368

Query: 61  LRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A+ +L ++  S G  P+  TY +++   ++     L LE+L  M+ KG   + + Y 
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++  F K+G++ EA + + +M  DG++ + V +N LI+ +CKE ++  A  +  EM ++
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D YT   LI GLC+   IK A   L  M   G  +N   YN +++   + G+I  A
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M  +    D  TY+S++  LC+A  +  A  L    L+ G      +   +++G
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608

Query: 296 LRHSGCRREAKKIQSKI 312
           L  SG   EA + Q ++
Sbjct: 609 LCRSGMVEEAVEFQKEM 625



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 161/348 (46%), Gaps = 36/348 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF +++   C     D+AL + R + KHG VP  V Y  LI  L K  R
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNR 267

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG--FGY 118
           +  A  +L+E+   G  P+A T+  ++    +  +     ++++ M  +G+  D   +GY
Sbjct: 268 VNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGY 327

Query: 119 C-----------------------------TVIAAFVKIGRLKEATDYMEQMVTD-GVQL 148
                                         T+I  FV  GRL +A   +  MVT  G+  
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVP 387

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+ +YN+LI  Y KEG +  A  +L +M  +G + + Y++TIL+DG CK G I  A   L
Sbjct: 388 DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVL 447

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M+  G   N   +NC++    K+ +I  A+ +F  M  K    D +T++S++  LC+ 
Sbjct: 448 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 507

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             +  A  LL   +  GV         +++     G  +EA+K+ +++
Sbjct: 508 DEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEM 555



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 141/266 (53%), Gaps = 4/266 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++ G  K      AL +   ++  G  P + +Y IL+ G CK G++  A 
Sbjct: 385 IVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAY 444

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+   G  PN + +  ++    +  +    +EI   M RKG   D + + ++I+  
Sbjct: 445 NVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGL 504

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++  +K A   +  M+++GV  + V+YNTLIN + + G+++ A  L++EM  QG   D+
Sbjct: 505 CEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDE 564

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI GLC+AG +  AR   E M + G   +  + N +++ L + G ++ A+   + 
Sbjct: 565 ITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKE 624

Query: 246 MEVK----DSFTYSSMVHNLCKAKRL 267
           M ++    D  T++S+++ LC+A R+
Sbjct: 625 MVLRGSTPDIVTFNSLINGLCRAGRI 650



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 130/266 (48%), Gaps = 4/266 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T  FN +++  CK      A+ +FR + + G  P++ T+N LI GLC+   ++ A 
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 514

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+L+++   G   N +TY T++    R  + K   ++++ M  +G   D   Y ++I   
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + +A    E+M+ DG     +S N LIN  C+ G +E A     EM  +G   D 
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 634

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI-DHAINVFE 244
            T   LI+GLC+AG I+        +   G   +   +N ++  L K G + D  + + E
Sbjct: 635 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDE 694

Query: 245 SME---VKDSFTYSSMVHNLCKAKRL 267
            +E   V +  T+S ++ ++   + L
Sbjct: 695 GIEDGFVPNHRTWSILLQSIIPQETL 720



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 131/325 (40%), Gaps = 36/325 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N++L  L        A  +F  +      P L T+ +++K  C    + +A  +
Sbjct: 180 PTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSL 239

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++   G  PN++ Y T++    +  +    L++L  M   G   D   +  VI    K
Sbjct: 240 LRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK 299

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA------------------ 169
             R+ EA   + +M+  G   D ++Y  L+N  CK G+++AA                  
Sbjct: 300 FDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTL 359

Query: 170 --------------YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
                          +L D +   G   D  T+  LI G  K G +  A   L  M   G
Sbjct: 360 IHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKG 419

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSAS 271
              N+ +Y  +VD   K GKID A NV   M       ++  ++ ++   CK  R+P A 
Sbjct: 420 CKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAV 479

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGL 296
           ++     + G +       +++ GL
Sbjct: 480 EIFREMPRKGCKPDVYTFNSLISGL 504



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 120/284 (42%), Gaps = 15/284 (5%)

Query: 37  QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM----KCCFR 92
            ++G+      Y +LI  L   G  +T   +L ++ D G       + +IM    K  F 
Sbjct: 103 SQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFP 162

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
            +  +L LE+ +    +  TF    Y  V+   V     K A +    M++  +   + +
Sbjct: 163 GQTTRLMLEMRNVYSCEP-TFK--SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFT 219

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +  ++  +C   ++++A  LL +M K G   +   +  LI  L K   +  A   LE M 
Sbjct: 220 FGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMF 279

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
            +G   + E +N ++  L K  +I+ A  +   M ++    D  TY  +++ LCK  R+ 
Sbjct: 280 LMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVD 339

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +A  L     K  + I  +    ++ G    G   +AK + S +
Sbjct: 340 AAKDLFYRIPKPEIVIFNT----LIHGFVTHGRLDDAKAVLSDM 379



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 1/270 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTARWILKE 70
            + +++  L  N       R+   ++  G V +   +  +++   KAG   +T R +L+ 
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 172

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
                  P   +Y  +++       +K+   +   M  +      F +  V+ AF  +  
Sbjct: 173 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE 232

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +  A   +  M   G   + V Y TLI+   K  ++  A  LL+EM   G   D  T   
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 292

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           +I GLCK   I  A   +  M   GF  +   Y  +++ L K G++D A ++F  +   +
Sbjct: 293 VILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPE 352

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
              +++++H      RL  A  +L   + S
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTS 382


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 162/311 (52%), Gaps = 11/311 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           A+FN +L+ LCK++  + A  +FR L+   F  + VTYN+++ G C   R   A  +LKE
Sbjct: 162 ASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKE 220

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + + G  PN  TY T++K  FR  + +   E    MK++    D   Y TV+  F   G 
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 280

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +K A +  ++M+ +GV   + +YN +I + CK+  +E A ++ +EM ++G+E +  T+ +
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           LI GL  AG        ++ M   G + N + YN ++    +  +++ A+ +FE M   D
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400

Query: 251 SF----TYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 TY+ ++  +   KR   +  A KLLL  ++ G    K     V++GL  +G + 
Sbjct: 401 CLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQA 460

Query: 304 EAKKI---QSK 311
            AK+I   QSK
Sbjct: 461 FAKEILRLQSK 471



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ML G  +     +A   F  ++K     ++VTY  ++ G   AG 
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 280

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ AR +  E+   G  P+  TY  +++   +    +  + +   M R+GY  +   Y  
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G      + M++M  +G + +  +YN +I  Y +  ++E A  L ++M    
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400

Query: 181 FECDKYTHTILIDGL 195
              +  T+ ILI G+
Sbjct: 401 CLPNLDTYNILISGM 415



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 38/186 (20%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY------------ 48
           MI   + P  AT+N M+  LCK    +NA+ MF  + + G+ P + TY            
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350

Query: 49  -----------------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                                  N++I+   +   +  A  + +++G     PN  TY  
Sbjct: 351 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNI 410

Query: 86  IMKCCF---RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
           ++   F   R+    +  ++L  M  +G+    F +  V+   +  G    A + +    
Sbjct: 411 LISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQS 470

Query: 143 TDGVQL 148
             G +L
Sbjct: 471 KSGSRL 476


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 160/311 (51%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++G CK    D+A+ +   +   G VP +VTY +++ GLCK G++  A 
Sbjct: 335 MMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVAD 394

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G   N + YTT++   F N+  +  L++L+ MK KG   D   Y T+I   
Sbjct: 395 DVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGL 454

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+ +L EA   + +M   G++ + V Y T+++ + K GK   A  LL ++   G + + 
Sbjct: 455 CKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNV 514

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDGLCKAG+I  A  H + M ++G D N++ Y  ++D   K G +  A+++   
Sbjct: 515 VTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNE 574

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D   Y+S++    K   L  A  L    +++G+++        + G  +   
Sbjct: 575 MVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNM 634

Query: 302 RREAKKIQSKI 312
            +EA+ + S++
Sbjct: 635 MQEARGVLSEM 645



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFNI+++ LCK      A  +F  ++  G  P++VTYN LI G  K G L     +
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+  SG A + +TY  ++ C  +    +        MKR G   +     T + AF K
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCK 316

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++EA     QM   G+  +  +Y +L++  CK G+L+ A +LLDEM  QG   +  T
Sbjct: 317 EGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVT 376

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+++DGLCK G +  A   L  M + G  +N   Y  ++     +   + A+++   M+
Sbjct: 377 YTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMK 436

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D   Y +++  LCK ++L  A  LL      G+R        ++D    +G   
Sbjct: 437 NKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKES 496

Query: 304 EAKKIQSKI 312
           EA  +  KI
Sbjct: 497 EAVALLHKI 505



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 132/312 (42%), Gaps = 39/312 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCK-----------------------------------NRY 25
           M+   L P   T+ +M++GLCK                                   N+ 
Sbjct: 365 MVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKN 424

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           ++ AL +   ++  G   ++  Y  LI GLCK  +L  A+ +L ++ D G  PN + YTT
Sbjct: 425 SERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTT 484

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           IM   F+  K    + +L  +   G   +   YC +I    K G + EA  + ++M   G
Sbjct: 485 IMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELG 544

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  ++  Y TLI+ +CK G L  A  L++EM  +G   DK  +T LIDG  K G+++GA 
Sbjct: 545 LDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAF 604

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNL 261
                M + G   +L  Y C +        +  A  V   M       D   Y+ ++   
Sbjct: 605 ALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKY 664

Query: 262 CKAKRLPSASKL 273
            K   +  AS L
Sbjct: 665 QKLGNMEEASSL 676



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 113/235 (48%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  ++ GLCK +  D A  +   +   G  P  V Y  ++    KAG+   A  +L ++ 
Sbjct: 447 YGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIP 506

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           DSG  PN +TY  ++    +       +     M+  G   +   Y T+I  F KIG L 
Sbjct: 507 DSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLS 566

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   M +MV  G+ LD V Y +LI+ + K+G L+ A+ L  +M + G + D Y +T  I
Sbjct: 567 KAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFI 626

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            G C    ++ AR  L  M   G   +  AYNC++ +  K G ++ A ++   ME
Sbjct: 627 SGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEME 681



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 125/282 (44%), Gaps = 43/282 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T N +L  L +NR      R+F    +H   P + T+NI+I  LCK G L  AR
Sbjct: 164 VPPNTRTCNHILLRLARNRQGGLVRRLF----EHLPAPNVFTFNIVIDFLCKQGELVEAR 219

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G +P+ +TY +++                          DG+G C      
Sbjct: 220 ALFVRMKAMGCSPDVVTYNSLI--------------------------DGYGKC------ 247

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L+E    + +M   G   D+V+YN LIN + K G +E AY    EM++ G   + 
Sbjct: 248 ---GELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANV 304

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T +  +D  CK G ++ A      M   G   N   Y  +VD   K G++D AI + + 
Sbjct: 305 VTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDE 364

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M     V +  TY+ MV  LCK  ++  A  +L    ++GV+
Sbjct: 365 MVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVK 406



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 8/261 (3%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+N ++N   K  + + A   F  +++ G +  +VT +  +   CK G +R A  +  
Sbjct: 269 VVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFA 328

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G  PN  TYT+++    +  +    + +L  M  +G   +   Y  ++    K G
Sbjct: 329 QMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEG 388

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++  A D +  M   GV+ + + Y TLI+ +      E A  LL+EM+ +G E D   + 
Sbjct: 389 KVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYG 448

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LI GLCK   +  A+  L  M+  G   N   Y  I+D   K GK   A+ +    ++ 
Sbjct: 449 TLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLH--KIP 506

Query: 250 DS------FTYSSMVHNLCKA 264
           DS       TY +++  LCKA
Sbjct: 507 DSGLQPNVVTYCALIDGLCKA 527



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++GLCK      A+  F  +++ G  P +  Y  LI G CK G L  A 
Sbjct: 510 LQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAV 569

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ D G + + + YT+++    +    +    + + M   G   D + Y   I+ F
Sbjct: 570 HLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGF 629

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             +  ++EA   + +M+  G+  D  +YN LI  Y K G +E A  L +EME     C
Sbjct: 630 CNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESVLSSC 687


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 4/317 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           I     P   T+N  +NGLC+N +  +AL++   + + G  P++ TYNI++  LCK G+L
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A+ IL ++ D G  P+  T+ T++       + +  L++   +  KG + D + +  +
Sbjct: 338 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I A  K+G    A    E+M   G   D V+YNTLI+  C  GKL  A  LL +ME  G 
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
                T+  +IDGLCK   I+ A    + M+  G   N   +N ++D L KD KID A  
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFG 517

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +   M  +    ++ TY+S++ + CK   +  A+ +L +   +G  +       +++GL 
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 298 HSGCRREAKKIQSKIRM 314
            +G  + A K+   +R+
Sbjct: 578 KAGRTQVALKVLRGMRI 594



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 156/300 (52%), Gaps = 5/300 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   TFNI++N LCK      ALR+F  ++  G  P+ VTYN LI  LC  G+L  A 
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 446

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK++  +G   + ITY TI+    +  + +   E+   M  +G + +   + T+I   
Sbjct: 447 DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 506

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ +A   + QM+++G+Q + ++YN+++  YCK+G ++ A  +L+ M   GFE D 
Sbjct: 507 CKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDV 566

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GLCKAG  + A   L  M   G     +AYN ++  L +   I  A+++F  
Sbjct: 567 VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFRE 626

Query: 246 M----EVKDSFTYSSMVHNLCK-AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M    E  D+ TY  +   LC+    +  A   +L  +  G     S+ + + +GL + G
Sbjct: 627 MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686



 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 9   CTAT---FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           C+AT    N+++NG CK    ++AL   +     GF P+ +TYN  + GLC+   +  A 
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   GH P+  TY  ++ C  +N + +    IL+ M  +G   D   + T+IAA 
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 366

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               RL+EA D   Q+   GV  D+ ++N LIN  CK G    A  L +EM+  G   D+
Sbjct: 367 CTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDE 426

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LID LC  G +  A   L+ M   G   +   YN I+D L K  +I+ A  VF+ 
Sbjct: 427 VTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQ 486

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M++    +++ T+++++  LCK K++  A  L+   +  G++
Sbjct: 487 MDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQ 528



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 145/296 (48%), Gaps = 6/296 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF  ++ G  +    + ALR+   + + G     VT N+LI G CK GR+  A 
Sbjct: 212 VAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDAL 271

Query: 66  -WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +I +E+ D G  P+ ITY T +    +N      L+++  M ++G+  D F Y  V+  
Sbjct: 272 GYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNC 330

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+L+EA   + QMV  G   DI ++NTLI   C   +LE A  L  ++  +G   D
Sbjct: 331 LCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPD 390

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT  ILI+ LCK G+   A    E M   G   +   YN ++D L   GK+  A+++ +
Sbjct: 391 VYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLK 450

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ME     + + TY++++  LCK  R+  A ++       G+         ++DGL
Sbjct: 451 DMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 506



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 5/303 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++  LC     + AL + R +   G  P++ T+NILI  LCK G    A  +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ +SG  P+ +TY T++       K    L++L  M+  G       Y T+I    K
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R++EA +  +QM   G+  + +++NTLI+  CK+ K++ A+ L+++M  +G + +  T
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNIT 533

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++   CK G+IK A   LE M   GF+ ++  Y  +++ L K G+   A+ V   M 
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL-RHSGCR 302
           +K        Y+ ++ +L +   +  A  L     + G        K V  GL R  G  
Sbjct: 594 IKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI 653

Query: 303 REA 305
           +EA
Sbjct: 654 KEA 656



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 164/349 (46%), Gaps = 39/349 (11%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N +LN L +         ++  +   G  P++VT+N L+K LC+A ++RTA  +L+
Sbjct: 146 TVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLE 205

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G AP+  T+TT+M+        +  L + + M   G +        +I  + K+G
Sbjct: 206 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 265

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A  Y++Q + DG + D ++YNT +N  C+   +  A  ++D M ++G + D +T+ 
Sbjct: 266 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 325

Query: 190 ILIDGLCKAGNIKGARLHLEYM----------------------NKI------------- 214
           I+++ LCK G ++ A+  L  M                      N++             
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G   ++  +N +++ L K G    A+ +FE M+      D  TY++++ NLC   +L  A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
             LL     +G          ++DGL       EA+++  ++ +  IS 
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 9/259 (3%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           N L+   G+Q      + V YN L+  L +  +++    +  E+G  G  P+ +T+ T+M
Sbjct: 134 NQLQPLFGIQA-----DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLM 188

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K   R  + +  + +L  M  +G   D   + T++  FV+ G ++ A     +M+  G  
Sbjct: 189 KALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 248

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
              V+ N LIN YCK G++E A   + +    GFE D+ T+   ++GLC+  ++  A   
Sbjct: 249 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKV 308

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           ++ M + G D ++  YN +V+ L K+G+++ A  +   M     + D  T+++++  LC 
Sbjct: 309 MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCT 368

Query: 264 AKRLPSASKLLLSCLKSGV 282
             RL  A  L       GV
Sbjct: 369 GNRLEEALDLARQVTVKGV 387



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 128/308 (41%), Gaps = 42/308 (13%)

Query: 16  MLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +L  L +    D ALRM    L +  F P    Y  +I+ L   G L   + ++ E+   
Sbjct: 44  LLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRRE 103

Query: 75  GH-------------------------------------APNAITYTTIMKCCFRNRKYK 97
           GH                                       + + Y  ++       K K
Sbjct: 104 GHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMK 163

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           L   + S M  +G   D   + T++ A  +  +++ A   +E+M + GV  D  ++ TL+
Sbjct: 164 LLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLM 223

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
             + +EG +EAA  +   M + G    K T  +LI+G CK G ++ A  +++     GF+
Sbjct: 224 QGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFE 283

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
            +   YN  V+ L ++  + HA+ V + M       D FTY+ +V+ LCK  +L  A  +
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 343

Query: 274 LLSCLKSG 281
           L   +  G
Sbjct: 344 LNQMVDRG 351



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 1/157 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N +L   CK      A  +   +  +GF  ++VTY  LI GLCKAGR
Sbjct: 522 MISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 581

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+ +   G  P    Y  +++  FR    +  L +   M   G   D   Y  
Sbjct: 582 TQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKI 641

Query: 121 VIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           V     +  G +KEA D+M +MV  G   +  S+  L
Sbjct: 642 VFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 145/269 (53%), Gaps = 5/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T++ +++GL K    ++A+ + R ++  G +P+ VTYN LI G  K  RLR A  +L+
Sbjct: 278 TVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLR 337

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ ++G  P+ +TYTT+     R+ ++   +EIL  M  +G   +   Y +++    K G
Sbjct: 338 EMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAG 397

Query: 130 RLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           R+ EA  Y E+M  D V    +++Y+ LI+  CK GK++ AY  L+ M + G   D  T 
Sbjct: 398 RVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTF 457

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           +ILI+GLC AG I         M + G   ++  Y  +VDRL +  ++D A ++F+ M  
Sbjct: 458 SILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRS 517

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKL 273
                D  T  +M+H L +  R   A ++
Sbjct: 518 DGLSPDRSTRRTMIHGLLEVNRDEDAKRI 546



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 145/283 (51%), Gaps = 11/283 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALR----MFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           P   TF +++ GLCK    + A R    MF  + + G  P+++T+N ++ GLCK  R+  
Sbjct: 169 PELITFGLIIKGLCKEGEIEAAFRVVDEMF--MIESGLSPDVITFNSVLDGLCKEQRILD 226

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + K   + G  PN +TY+T++    +  K    L++L+ M   G   +   Y TV+ 
Sbjct: 227 AHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVD 286

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             +K+GR+++A   + QM   G   D V+YNTLI+ + K  +L  A  LL EM + GF  
Sbjct: 287 GLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHP 346

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              T+T L  GLC++G    A   L+YM   G   N   Y+ IVD L K G++  A+  F
Sbjct: 347 SVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYF 406

Query: 244 ESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           E M            YS+++  LCKA ++  A + L   +++G
Sbjct: 407 EKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAG 449



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 166/354 (46%), Gaps = 46/354 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L+P   TFN +L+GLCK +   +A  +F+   + G  P +VTY+ LI GL K  +
Sbjct: 199 MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAK 258

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++ + G   N +TY+T++    +  + +  + +L  M+  G   D   Y T
Sbjct: 259 MDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNT 318

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K  RL+EA   + +M+  G    +V+Y TL +  C+ G+ + A  +LD M  +G
Sbjct: 319 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 378

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD----SNLEAYNCIVDRLGKDGKI 236
              +  T++ ++DGLCKAG +  A   L Y  K+  D     ++ AY+ ++D L K GKI
Sbjct: 379 CAPNAITYSSIVDGLCKAGRVTEA---LGYFEKMARDEVVAPHVIAYSALIDGLCKAGKI 435

Query: 237 DHAINVFESME---------------------------------------VKDSFTYSSM 257
           D A    E M                                        V D  TY+++
Sbjct: 436 DEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATL 495

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
           V  LC+A R+  A  L       G+   +S ++ ++ GL       +AK+IQ +
Sbjct: 496 VDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 7/305 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GL K R    A  +F   +  G  P +VTYN +I GLCK GR+  A  +
Sbjct: 28  PDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTL 87

Query: 68  LKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             ++    G  P  +TY+T++    R+ +   G ++L  M  +G   +   Y T++ A +
Sbjct: 88  YDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALL 147

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME--KQGFECD 184
             GR KEA   +EQM  +G   +++++  +I   CKEG++EAA+ ++DEM   + G   D
Sbjct: 148 GQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPD 207

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T   ++DGLCK   I  A    +   + G   N+  Y+ ++D L K  K+D A+ +  
Sbjct: 208 VITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLA 267

Query: 245 SMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       ++ TYS++V  L K  R+  A  +L     +G          ++DG     
Sbjct: 268 KMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQ 327

Query: 301 CRREA 305
             REA
Sbjct: 328 RLREA 332


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 150/276 (54%), Gaps = 6/276 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +LTP   T+ ++++GLCK    D A+ +   ++K   VP  VTYN LI GLCKA R   A
Sbjct: 76  NLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEA 134

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+E+  SG  P+  TYTT++    +++K    L +   +  +G+  D   Y  +I  
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDG 194

Query: 125 FVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             K GRLKEA D   +M+  G  + + V+YN+LI+ +C+ GK++ A  LL+ M + G   
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+T L++G CK   +  A   L  M + G   ++  +  ++D L ++ ++  A+++ 
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 244 ESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLL 275
             M  K      +TY++++   C+A +L  A K +L
Sbjct: 315 GEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFML 350



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 148/278 (53%), Gaps = 7/278 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++ G CK++ +D+ALR+F  L   GF P++VTY+ LI GLCK GR
Sbjct: 141 MVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGR 200

Query: 61  LRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L+ A  +   +  SG   PN +TY +++    R  K    + +L  M   G + D   Y 
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  F K+ RL +A D + QM   G+  D+V++ +L++  C+E +L  A  +L EM ++
Sbjct: 261 TLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                 YT+  ++DG C+A  ++ AR  +  + ++    N+ ++N ++  L K  +   A
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
           + + E    +    D   Y++++  LC+ K++  A ++
Sbjct: 379 MELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRV 416



 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 145/291 (49%), Gaps = 6/291 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+  ++ GLCK +  + AL     +   GF P++ TY  +I  LC   RL  AR  L+E
Sbjct: 12  VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + +    PN +TYT ++    +  +    + +LS M++K        Y ++I+   K  R
Sbjct: 72  MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLISGLCKAER 130

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             EA D +E+MV  G   DI +Y TLI  +CK  K + A  + +++  +GF  D  T++ 
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
           LIDGLCK G +K A      M K G    N   YN ++    + GK+D A+N+ E M   
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               D  TY+++++  CK  RL  A  LL    + G+        +++DGL
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGL 301



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 143/314 (45%), Gaps = 8/314 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  +++ LC       A +    +      P +VTY +LI GLCK GR
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGR 96

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++      P A+TY +++    +  +     ++L  M   G   D F Y T
Sbjct: 97  VDEAVALLSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K  +  +A    EQ+V  G + D+V+Y+ LI+  CKEG+L+ A  L   M K G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 181 FEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
             C  +  T+  LI G C+ G +  A   LE M + G   ++  Y  +++   K  ++D 
Sbjct: 216 -SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A ++   M  K    D  T++S++  LC+  RL  A  +L    +            ++D
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334

Query: 295 GLRHSGCRREAKKI 308
           G   +    EA+K 
Sbjct: 335 GYCRANQLEEARKF 348



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 139/270 (51%), Gaps = 10/270 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARW 66
           P   T++ +++GLCK      A+ +F  + K G  +P  VTYN LI G C+ G++  A  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ + ++G +P+ +TYTT+M    +  +     ++L+ M RKG T D   + +++    
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY-LLLDEMEKQGFECDK 185
           +  RL +A   + +M        + +YNT+++ YC+  +LE A   +L+EM+      + 
Sbjct: 303 RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPP---NV 359

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  I+I GLCK      A   +E   +   + ++  Y  ++D L ++ K+D A  V+  
Sbjct: 360 VSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRK 419

Query: 246 ME-----VKDSFTYSSMVHNLCKAKRLPSA 270
           M      + +S TYS+++  LC A  L  A
Sbjct: 420 MLEEPGCLPNSITYSTLITGLCNAGMLDRA 449



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 144/289 (49%), Gaps = 5/289 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P T T+N +++G C+    D A+ +   + + G  P++VTY  L+ G CK  RL  
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++   G  P+ +T+T++M    R  +    + IL  M+RK  +   + Y T++ 
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334

Query: 124 AFVKIGRLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            + +  +L+EA  +M E+M       ++VS+N +I   CK  +   A  L++E  ++   
Sbjct: 335 GYCRANQLEEARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCN 391

Query: 183 CDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            D   +T +IDGLC+   +  A R++ + + + G   N   Y+ ++  L   G +D A  
Sbjct: 392 PDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARG 451

Query: 242 VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
             E   V +  TY+ ++    KA R   A +LL   ++ G   ++S Q+
Sbjct: 452 YIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFGGVQSHQR 500



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 5/196 (2%)

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D   Y ++I    K+ RL++A  ++ +MV+ G   D+ +Y  +I+  C E +L  A   L
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
           +EM  +    +  T+T+LIDGLCK G +  A   L  M K    + +  YN ++  L K 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV-TYNSLISGLCKA 128

Query: 234 GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            +   A ++ E M     + D FTY++++   CK+K+   A ++    +  G R      
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 290 KAVVDGLRHSGCRREA 305
             ++DGL   G  +EA
Sbjct: 189 SCLIDGLCKEGRLKEA 204



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           + T+    D V+Y +LI   CK  +LE A + L +M  +GF  D YT+T +I  LC    
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSM 257
           +  AR  LE M       N+  Y  ++D L K G++D A+ +   M    V  + TY+S+
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSL 121

Query: 258 VHNLCKAKRLPSASKLLLSCLKSG 281
           +  LCKA+R   A  LL   + SG
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSG 145


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 160/305 (52%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N ++ GL K   +  A+ +   +++HG  P+++TY+ LI GL K G    A  +
Sbjct: 147 PDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKL 206

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  P++IT+T +M    +  +    LE+L  MK +G       Y  +IA F K
Sbjct: 207 FQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGK 266

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G L EA + +++M  +G + D+V+Y+ LI    K  +L+ A  +L +MEK+G   D  T
Sbjct: 267 VGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTIT 326

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+GL KAG +  A    + M   G + ++  Y+ ++  LGK  +++ A  +FE ME
Sbjct: 327 YNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEME 386

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D FTY S++  L KA ++  A +L       G+        A ++ L   G  +
Sbjct: 387 SVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFK 446

Query: 304 EAKKI 308
           EA+KI
Sbjct: 447 EARKI 451



 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 167/315 (53%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++ L K      A  +F  +++ G VP+  TYN LI GL K GR + A  +
Sbjct: 112 PDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMEL 171

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  P+ +TY++++    ++ +     ++   MKR+G   D   +  ++ A  K
Sbjct: 172 LEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGK 231

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ +A + +++M   GV+  +V+YN LI  + K G L  AY LLDEM++ G + D  T
Sbjct: 232 AGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVT 291

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI GL KA  +  A   L+ M K G   +   YN +++ LGK G ++ A  +F+ M+
Sbjct: 292 YSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMK 351

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D  TYS+++  L KA R+ SA  L       G++       +++  L  +G   
Sbjct: 352 SKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVD 411

Query: 304 EAKKIQSKIRMAKIS 318
           +A ++ S++R   +S
Sbjct: 412 DADRLFSEMRGKGLS 426



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + TF  +++ L K    D+AL +   +++ G  P +VTYN LI G  K G L  A  +
Sbjct: 217 PDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNL 276

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+  +G  P+ +TY+ ++    +  +     ++L  M+++G   D   Y T+I    K
Sbjct: 277 LDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGK 336

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L +A    ++M + G   D+V+Y+TLI    K  ++E+A +L +EME  G + D +T
Sbjct: 337 AGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFT 396

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I  L KAG +  A      M   G   ++  YN  ++ LG+ G+   A  +FE M+
Sbjct: 397 YCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMK 456

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               + D  TY +++  L K K +  A  LL   ++ G
Sbjct: 457 ESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQG 494



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 156/311 (50%), Gaps = 4/311 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   +++ ++N L +    + AL +   +Q  G  P L TYN L+  L KAG+   A  
Sbjct: 41  TPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALR 100

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E+ D+G  P+  TY  ++    +  +      + + M+ +G   D F Y ++I    
Sbjct: 101 LLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLG 160

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+GR ++A + +E+M   G   D+++Y++LI    K+G+   A+ L  EM+++G + D  
Sbjct: 161 KVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSI 220

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T T L+D L KAG +  A   L+ M + G    +  YN ++   GK G +  A N+ + M
Sbjct: 221 TFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEM 280

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +      D  TYS ++  L KA +L  A ++L    K G          +++GL  +G  
Sbjct: 281 KRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLL 340

Query: 303 REAKKIQSKIR 313
            +A ++  +++
Sbjct: 341 NDAGRLFDRMK 351



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 147/297 (49%), Gaps = 4/297 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T++ ++ GL K+  T  A ++F+ +++ G  P+ +T+  L+  L KAGR+  A  
Sbjct: 181 PPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALE 240

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E+ + G  P  +TY  ++    +         +L  MKR G   D   Y  +I   +
Sbjct: 241 LLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLI 300

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  +L EA   +++M  +G   D ++YNTLIN   K G L  A  L D M+ +G   D  
Sbjct: 301 KASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVV 360

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LI  L KA  ++ A +  E M  +G   +L  Y  I+  LGK G++D A  +F  M
Sbjct: 361 TYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEM 420

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
             K    D  TY++ +++L +  R   A K+     +SG+    +   A++ GL  +
Sbjct: 421 RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKT 477



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 150/311 (48%), Gaps = 4/311 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +LN L K    + A  +F  L+   + P++V+Y+ LI  L +AG+   A  
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E+   G  PN  TY T++ C  +  ++   L +L+ M+  G   D   Y  +I+   
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GRL EA     +M   G   D  +YN+LI    K G+ + A  LL+EME+ G   D  
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LI GL K G    A    + M + G   +   +  ++D LGK G++D A+ + + M
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245

Query: 247 E---VKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +   VK    TY++++    K   L  A  LL    ++G +        ++ GL  +   
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQL 305

Query: 303 REAKKIQSKIR 313
            EA ++  K+ 
Sbjct: 306 DEACQVLKKME 316



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 136/294 (46%), Gaps = 39/294 (13%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T T+N ++NGL K    ++A R+F  ++  G  P++VTY+ LI  L KA R+ +A  
Sbjct: 321 PPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACV 380

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +E+   G  P+  TY +I+    +  +      + S M+ KG + D   Y   + +  
Sbjct: 381 LFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLG 440

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG--FECD 184
           + GR KEA    E M   G+  D+ +Y+ L+    K  +++ A  LL E+ +QG  F+  
Sbjct: 441 RGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSL 500

Query: 185 KY---------------------------------THTILIDGLCKAGNIKGARLHLEYM 211
           K+                                 ++  LID L KAG +  A   LE +
Sbjct: 501 KFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDL 560

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
            + G   ++ +Y+ ++  LG+ G+ID A  + E M  +       +YS++V  L
Sbjct: 561 KEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKL 614



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 113/225 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++  L K    D+A R+F  ++  G  P+++TYN  +  L + GR + AR
Sbjct: 390 IQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEAR 449

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I +++ +SG  P+  TY  ++    + ++      +L  +  +G  FD   +   +   
Sbjct: 450 KIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEIL 509

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G + EA + ++   + G+     SYN LI+   K G++  A+  L+++++QG + D 
Sbjct: 510 TSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDI 569

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +++ LI  L + G I  A   LE M+K G   +  +Y+ +V +L
Sbjct: 570 VSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKL 614


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 150/276 (54%), Gaps = 6/276 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +LTP   T+ ++++GLCK    D A+ +   ++K   VP  VTYN LI GLCKA R   A
Sbjct: 76  NLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEA 134

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+E+  SG  P+  TYTT++    +++K    L +   +  +G+  D   Y  +I  
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDG 194

Query: 125 FVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             K GRLKEA D   +M+  G  + + V+YN+LI+ +C+ GK++ A  LL+ M + G   
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+T L++G CK   +  A   L  M + G   ++  +  ++D L ++ ++  A+++ 
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 244 ESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLL 275
             M  K      +TY++++   C+A +L  A K +L
Sbjct: 315 GEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFML 350



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 148/278 (53%), Gaps = 7/278 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++ G CK++ +D+ALR+F  L   GF P++VTY+ LI GLCK GR
Sbjct: 141 MVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGR 200

Query: 61  LRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L+ A  +   +  SG   PN +TY +++    R  K    + +L  M   G + D   Y 
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  F K+ RL +A D + QM   G+  D+V++ +L++  C+E +L  A  +L EM ++
Sbjct: 261 TLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                 YT+  ++DG C+A  ++ AR  +  + ++    N+ ++N ++  L K  +   A
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
           + + E    +    D   Y++++  LC+ K++  A ++
Sbjct: 379 MELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRV 416



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 145/291 (49%), Gaps = 6/291 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+  ++ GLCK +  + AL     +   GF P++ TY  +I  LC   RL  AR  L+E
Sbjct: 12  VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + +    PN +TYT ++    +  +    + +LS M++K        Y ++I+   K  R
Sbjct: 72  MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLISGLCKAER 130

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             EA D +E+MV  G   DI +Y TLI  +CK  K + A  + +++  +GF  D  T++ 
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
           LIDGLCK G +K A      M K G    N   YN ++    + GK+D A+N+ E M   
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               D  TY+++++  CK  RL  A  LL    + G+        +++DGL
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGL 301



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 143/314 (45%), Gaps = 8/314 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  +++ LC       A +    +      P +VTY +LI GLCK GR
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGR 96

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++      P A+TY +++    +  +     ++L  M   G   D F Y T
Sbjct: 97  VDEAVALLSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K  +  +A    EQ+V  G + D+V+Y+ LI+  CKEG+L+ A  L   M K G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 181 FEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
             C  +  T+  LI G C+ G +  A   LE M + G   ++  Y  +++   K  ++D 
Sbjct: 216 -SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A ++   M  K    D  T++S++  LC+  RL  A  +L    +            ++D
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334

Query: 295 GLRHSGCRREAKKI 308
           G   +    EA+K 
Sbjct: 335 GYCRANQLEEARKF 348



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 145/289 (50%), Gaps = 5/289 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P T T+N +++G C+    D A+ +   + + G  P++VTY  L+ G CK  RL  
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++   G  P+ +T+T++M    R  +    + IL  M+RK  +   + Y T++ 
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334

Query: 124 AFVKIGRLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            + +  +L+EA  +M E+M       ++VS+N +I   CK  +   A  L++E  ++   
Sbjct: 335 GYCRANQLEEARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCN 391

Query: 183 CDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            D   +T +IDGLC+   +  A R++ + + + G   N   Y+ +V  L   G +D A  
Sbjct: 392 PDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARG 451

Query: 242 VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
             E   V +  TY+ ++    KA R   A +LL   ++ G  +++S Q+
Sbjct: 452 YIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFGVVQSHQR 500



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 139/270 (51%), Gaps = 10/270 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARW 66
           P   T++ +++GLCK      A+ +F  + K G  +P  VTYN LI G C+ G++  A  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ + ++G +P+ +TYTT+M    +  +     ++L+ M RKG T D   + +++    
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY-LLLDEMEKQGFECDK 185
           +  RL +A   + +M        + +YNT+++ YC+  +LE A   +L+EM+      + 
Sbjct: 303 RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPP---NV 359

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  I+I GLCK      A   +E   +   + ++  Y  ++D L ++ K+D A  V+  
Sbjct: 360 VSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRK 419

Query: 246 ME-----VKDSFTYSSMVHNLCKAKRLPSA 270
           M      + +S TYS++V  LC A  L  A
Sbjct: 420 MLEEPGCLPNSITYSTLVTGLCNAGMLDRA 449



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 5/196 (2%)

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D   Y ++I    K+ RL++A  ++ +MV+ G   D+ +Y  +I+  C E +L  A   L
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
           +EM  +    +  T+T+LIDGLCK G +  A   L  M K    + +  YN ++  L K 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV-TYNSLISGLCKA 128

Query: 234 GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            +   A ++ E M     + D FTY++++   CK+K+   A ++    +  G R      
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 290 KAVVDGLRHSGCRREA 305
             ++DGL   G  +EA
Sbjct: 189 SCLIDGLCKEGRLKEA 204



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           + T+    D V+Y +LI   CK  +LE A + L +M  +GF  D YT+T +I  LC    
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSM 257
           +  AR  LE M       N+  Y  ++D L K G++D A+ +   M    V  + TY+S+
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSL 121

Query: 258 VHNLCKAKRLPSASKLLLSCLKSG 281
           +  LCKA+R   A  LL   + SG
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSG 145


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 155/310 (50%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++GLCK++  + A  ++  +   G  P ++TY+ LI G C AG+L  A  +
Sbjct: 148 PNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGL 207

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      PN  TYT +M    +  K K    +L+ M ++G   +   Y T++  +  
Sbjct: 208 LNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCL 267

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG ++ A      MV  GV  ++ SYN +I+  CK  +++ A  LL E+  +    +  T
Sbjct: 268 IGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVT 327

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDG CK G I  A   L+ M   G  +++  Y  ++D L K+  +D A  +F  M+
Sbjct: 328 YSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK 387

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    + +TY++++  LCK  R  +A KL    L  G RI       ++ GL   G   
Sbjct: 388 ERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLD 447

Query: 304 EAKKIQSKIR 313
           EA  ++SK+ 
Sbjct: 448 EALAMKSKME 457



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 140/271 (51%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       +L     +   GF  + V+Y  L+ GLCK G  R+A  +
Sbjct: 78  PNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKL 137

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ + D    PN + Y TI+    +++      ++ S M  +G   +   Y T+I  F  
Sbjct: 138 LRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCL 197

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L EA   + +M+   +  ++ +Y  L++  CKEGK++ A  LL  M K+G + +  +
Sbjct: 198 AGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVS 257

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +  L+DG C  G ++ A+     M + G + N+ +YN ++DRL K  ++D A+N+   + 
Sbjct: 258 YNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVL 317

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
               V ++ TYSS++   CK  R+ SA  LL
Sbjct: 318 HKNMVPNTVTYSSLIDGFCKLGRITSALDLL 348



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 145/278 (52%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   T+ I+++ LCK      A  +   + K G  P +V+YN L+ G C  G 
Sbjct: 211 MILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGE 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ +   +   G  PN  +Y  ++    ++++    + +L  +  K    +   Y +
Sbjct: 271 VQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSS 330

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+GR+  A D +++M   G   D+V+Y +L++  CK   L+ A  L  +M+++G
Sbjct: 331 LIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 390

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +KYT+T LIDGLCK G  K A+   +++   G   N+  YN ++  L K+G +D A+
Sbjct: 391 IQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEAL 450

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +   ME    + D+ T+  ++ +L +  +   A KLL
Sbjct: 451 AMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLL 488



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 153/329 (46%), Gaps = 39/329 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    FN ++  L K ++   A+ +F+ +Q  G  P+L T NILI   C  G++  +  
Sbjct: 7   TPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFT 66

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++   G+ PN IT  T+MK      + K  L     +  +G+  D   Y T++    
Sbjct: 67  VLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLC 126

Query: 127 KIGR-----------------------------------LKEATDYMEQMVTDGVQLDIV 151
           KIG                                    + EA D   +M   G+  +++
Sbjct: 127 KIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVI 186

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y+TLI  +C  G+L  A+ LL+EM  +    + YT+TIL+D LCK G +K A+  L  M
Sbjct: 187 TYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVM 246

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
            K G   N+ +YN ++D     G++ +A  +F +M  K    + ++Y+ M+  LCK+KR+
Sbjct: 247 TKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRV 306

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             A  LL   L   +        +++DG 
Sbjct: 307 DEAMNLLREVLHKNMVPNTVTYSSLIDGF 335



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 36/210 (17%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P T T++ +++G CK     +AL + + +   G   ++VTY  L+  LCK   L  A
Sbjct: 320 NMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKA 379

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  ++ + G  PN  TYT ++                             G C     
Sbjct: 380 TALFMKMKERGIQPNKYTYTALID----------------------------GLC----- 406

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR K A    + ++  G ++++ +YN +I+  CKEG L+ A  +  +ME+ G   D
Sbjct: 407 --KGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPD 464

Query: 185 KYTHTILIDGLC-KAGNIKGARLHLEYMNK 213
             T  I+I  L  K  N K  +L  E + K
Sbjct: 465 AVTFEIIIRSLFEKDQNDKAEKLLHEMIAK 494


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 158/310 (50%), Gaps = 44/310 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    FN++++GL K+   D A+++F  ++     PE+VTYN +I GLCK+G L  AR
Sbjct: 93  VAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKAR 152

Query: 66  WILKELGDSG--HAPNAITYTTIMK-----------CCFRNRKYKLG------------- 99
            +L+E+   G   AP+ +TY T++            C FR +    G             
Sbjct: 153 ELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVS 212

Query: 100 -----------LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                      LEIL  MK  G   D   Y ++I A    G++ EA + ++ M       
Sbjct: 213 GICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---SCSP 269

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+V++NTL++ +CK G L  A  +L+EM ++    D  T+TIL++GLC+ G ++ A   L
Sbjct: 270 DLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLL 329

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT----YSSMVHNLCKA 264
           E + + G+  ++ AY  +VD L K G+I+ A  + + M V+   T    YSS+V   C+A
Sbjct: 330 EEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRA 389

Query: 265 KRLPSASKLL 274
             +  A ++L
Sbjct: 390 GNVHKAREIL 399



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 147/277 (53%), Gaps = 7/277 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T NI+++G+CK+   + AL +  G++  G VP+++TYN +I  LC AG+
Sbjct: 195 MKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGK 254

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ILK +  S   P+ +T+ T++    +       LE+L  M R+    D   Y  
Sbjct: 255 VVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTI 311

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    ++G+++ A   +E++V  G   D+++Y +L++  CK G++E A+ L+ EM  +G
Sbjct: 312 LVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRG 371

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  ++ L+ G C+AGN+  AR  L  M  I     L  YN ++  L KDG I  A+
Sbjct: 372 CRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAV 431

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
           ++   +     V D  TY++++  LCKA R+  A  L
Sbjct: 432 SLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDL 468



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 150/308 (48%), Gaps = 9/308 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TF I++ G CK      AL   R L +    P++  +N+LI GL K G    A  
Sbjct: 59  SPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVK 118

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAA 124
           + + +  S   P  +TY T++    ++   +   E+L  M RKG     D   Y T+I A
Sbjct: 119 LFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINA 178

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F +  R++EA  + E+M   G+  D+++ N L++  CK+G +E A  +LD M+  G   D
Sbjct: 179 FYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPD 238

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  +I  LC AG +  A    E +  +    +L  +N ++D   K G +  A+ V E
Sbjct: 239 VITYNSIIHALCVAGKVVEAA---EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLE 295

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M     + D  TY+ +V+ LC+  ++  A  LL   ++ G      A  ++VDGL  SG
Sbjct: 296 EMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSG 355

Query: 301 CRREAKKI 308
              EA K+
Sbjct: 356 EIEEAHKL 363



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 156/303 (51%), Gaps = 4/303 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TFN +L+G CK      AL +   + +   +P+++TY IL+ GLC+ G+++ A +
Sbjct: 268 SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFY 327

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+   G+ P+ I YT+++    ++ + +   +++  M  +G       Y ++++ + 
Sbjct: 328 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYC 387

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G + +A + + +MV+  +   + +YN ++    K+G +  A  L+ ++  +G+  D  
Sbjct: 388 RAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVV 447

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LIDGLCKA  ++ A    + M   G   N      +V  L + G++D A ++   M
Sbjct: 448 TYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEM 507

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             K    +   Y+S++  LCK+ R+  A  +L +    GV +   A + ++  + H G  
Sbjct: 508 SRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRV 567

Query: 303 REA 305
            EA
Sbjct: 568 AEA 570



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 138/266 (51%), Gaps = 3/266 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N +L+ L K+ +     ++++ L   G  P LVT+ ILI+G CKAG+   A   L+ L
Sbjct: 29  SYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRAL 88

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +   AP+   +  ++   F++      +++   M+      +   Y TVI+   K G L
Sbjct: 89  DEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNL 148

Query: 132 KEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++A + +E+M+  G     DIV+YNTLIN + +  ++  A    ++M+  G   D  T  
Sbjct: 149 EKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCN 208

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           IL+ G+CK G+++ A   L+ M   G   ++  YN I+  L   GK+  A  + ++M   
Sbjct: 209 ILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCS 268

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D  T+++++   CKA  LP A ++L
Sbjct: 269 PDLVTFNTLLDGFCKAGMLPRALEVL 294



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 140/266 (52%), Gaps = 11/266 (4%)

Query: 22  KNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGR-LRTARWILKELGDSGHAPN 79
           ++   D A++ F    ++ G+  ++ +YN L+  L K+G   RT + + K+L  SG +PN
Sbjct: 3   RSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGK-VYKDLLHSGCSPN 61

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            +T+  +++   +  +    LE L A+       D + +  +I    K G   +A    E
Sbjct: 62  LVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFE 121

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCK 197
            M +  V+ +IV+YNT+I+  CK G LE A  LL+EM ++G +   D  T+  LI+   +
Sbjct: 122 NMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYR 181

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
           A  I+ A    E M   G + ++   N +V  + KDG ++ A+ + + M+    V D  T
Sbjct: 182 ASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVIT 241

Query: 254 YSSMVHNLCKAKRLPSASKLL--LSC 277
           Y+S++H LC A ++  A+++L  +SC
Sbjct: 242 YNSIIHALCVAGKVVEAAEILKTMSC 267



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 120/239 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +  +++GLCK+   + A ++ + +   G    +V Y+ L+ G C+AG +  AR I
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P   TY  ++    ++      + ++S +  +GY  D   Y T+I    K
Sbjct: 399 LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCK 458

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R++EA D  ++M + G   + V+  +++   C+ G+++ A+ L+ EM ++    +   
Sbjct: 459 ANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVV 518

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +T LIDGLCK+  +  A + L+ M   G   +  AY  ++  +   G++  A+ +++ M
Sbjct: 519 YTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEM 577



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 94/191 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   T+NI+L GL K+     A+ +   L   G+VP++VTYN LI GLCKA R
Sbjct: 402 MVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANR 461

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A  +  E+   G  PN +T  +++    R  +      ++  M RK +  +   Y +
Sbjct: 462 VREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTS 521

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R+ +A   ++ M   GV LD  +Y  LI      G++  A  + DEM  +G
Sbjct: 522 LIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARG 581

Query: 181 FECDKYTHTIL 191
           F  D  T   L
Sbjct: 582 FLPDGSTSKTL 592



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 7/231 (3%)

Query: 92  RNRKYKLGLEILS-AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           R+ +  L ++    A ++ GY  D   Y  ++   VK G         + ++  G   ++
Sbjct: 3   RSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNL 62

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V++  LI   CK G+   A   L  +++     D Y   +LI GL K GN   A    E 
Sbjct: 63  VTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFEN 122

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM------EVKDSFTYSSMVHNLCKA 264
           M        +  YN ++  L K G ++ A  + E M         D  TY+++++   +A
Sbjct: 123 MESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRA 182

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
            R+  A         +G+         +V G+   G   EA +I   +++A
Sbjct: 183 SRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLA 233


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 155/310 (50%), Gaps = 6/310 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   TFN +++G+CK    +NA    RGL  K G  P++ TY   I+GLCK GR++ A
Sbjct: 145 VQPTVVTFNTLMSGMCKASDLNNA-NALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDA 203

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + +E+ + G  PN +  TT++    +      GLE+   M  +G   D   Y  ++  
Sbjct: 204 MEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNG 263

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F ++  +K A D +E+M  DG++ D V+Y TLI+  CKEG+L+ A  +  EM  +G   D
Sbjct: 264 FCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 323

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+T LI GL KAG    A   L  M + G   +   Y  ++D   K+G +       +
Sbjct: 324 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLK 383

Query: 245 SMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+ K       TY+ +++  C   ++ +A  LL + L  GV         ++DG    G
Sbjct: 384 EMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHG 443

Query: 301 CRREAKKIQS 310
             R+ ++++S
Sbjct: 444 KVRDTEELKS 453



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 131/265 (49%), Gaps = 4/265 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G  PE   +N+L++ + ++G+L +AR +  E+   G  P  +T+ T+M    +       
Sbjct: 109 GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNA 168

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             +   M + G   D + Y   I    K GR+++A +  E+M   G+  + V   TLI+ 
Sbjct: 169 NALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDA 228

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CKEG + A   L  EM  +G + D   +  L++G C+  ++K A   +E M K G   +
Sbjct: 229 HCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPD 288

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G++D A+ + + M  +    D  TY++++  L KA R   A ++L 
Sbjct: 289 KVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILC 348

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSG 300
             +++G++   +    V+D    +G
Sbjct: 349 EMMEAGLQPDNTTYTMVIDAFCKNG 373



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 132/262 (50%), Gaps = 4/262 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    FN+++  + ++    +A  +F  + + G  P +VT+N L+ G+CKA  L  A 
Sbjct: 110 VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNAN 169

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +  +G AP+  TY   ++   +  + +  +E+   M  +G   +     T+I A 
Sbjct: 170 ALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAH 229

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +    +   +M T GV+ D+V+YN L+N +C+   ++AA  +++EM K G + DK
Sbjct: 230 CKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDK 289

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFE 244
            T+T LIDG CK G +  A    + M+  G   +   Y  ++  L K G+ +D    + E
Sbjct: 290 VTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCE 349

Query: 245 SMEV---KDSFTYSSMVHNLCK 263
            ME     D+ TY+ ++   CK
Sbjct: 350 MMEAGLQPDNTTYTMVIDAFCK 371



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+ ++++  CKN       +  + +Q  G  P +VTYN+++ G C  G+
Sbjct: 350 MMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQ 409

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +L  + + G  PN ITY  ++    ++ K +   E+ SA   KG   D   Y +
Sbjct: 410 MKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKSA---KGMVSDFGVYTS 466

Query: 121 VIAAFVK 127
           +I  FVK
Sbjct: 467 LINEFVK 473



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 4/191 (2%)

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++  + EA  +   ++  GV  +   +N L+    + GKL +A  + DEM ++G +    
Sbjct: 91  RLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVV 150

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   L+ G+CKA ++  A      M K G   ++  Y   +  L K G+I  A+ +FE M
Sbjct: 151 TFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM 210

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             +    ++   ++++   CK   + +  +L       GV+    A  A+V+G       
Sbjct: 211 CERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDM 270

Query: 303 REAKKIQSKIR 313
           + A  I  ++R
Sbjct: 271 KAANDIVEEMR 281


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++GLCK++  DNAL +   ++K G  P++VTYN LI GLC +GR   A  +
Sbjct: 184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRM 243

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +      P+  T+  ++  C +  +     E    M R+    D   Y  +I     
Sbjct: 244 VSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCM 303

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             RL EA +    MV+ G   D+V+Y+ LIN YCK  K+E    L  EM ++G   +  T
Sbjct: 304 YSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVT 363

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +TILI G C+AG +  A      M   G   N+  YN ++  L  +GKI+ A+ +   M+
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQ 423

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY+ ++  +CKA  +  A  +  S    G+         ++ GL   G RR
Sbjct: 424 KNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRR 483

Query: 304 EAKKIQSKIR 313
           EA  +  K++
Sbjct: 484 EADALFRKMK 493



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 143/293 (48%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NI+LN  C+      AL     + K G  P +VT+  L+ G C+  R+  A ++  ++
Sbjct: 118 TCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQM 177

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G+ PN + Y TI+    ++++    L++L+ M++ G   D   Y ++I+     GR 
Sbjct: 178 VGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRW 237

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +AT  +  M    +  D+ ++N LI+   KEG++  A    +EM ++  + D  T+++L
Sbjct: 238 SDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLL 297

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I GLC    +  A     +M   G   ++  Y+ +++   K  K++H + +F  M     
Sbjct: 298 IYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGV 357

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           V+++ TY+ ++   C+A +L  A ++    +  GV         ++ GL  +G
Sbjct: 358 VRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNG 410



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 124/243 (51%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   TFN +++   K      A   +  + +    P++VTY++LI GLC   RL  A
Sbjct: 251 EIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEA 310

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +   +   G  P+ +TY+ ++    +++K + G+++   M ++G   +   Y  +I  
Sbjct: 311 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQG 370

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + + G+L  A +   +MV  GV  +I++YN L++  C  GK+E A ++L +M+K G + D
Sbjct: 371 YCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDAD 430

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ I+I G+CKAG +  A      +N  G   ++  Y  ++  L K G    A  +F 
Sbjct: 431 IVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFR 490

Query: 245 SME 247
            M+
Sbjct: 491 KMK 493



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  A F+ +L+ + K +  D  + ++  +Q  G    L T NIL+   C+  +L  A   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+ +T+ +++    R  +    L +   M   GY  +   Y T+I    K
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A D + +M  DG+  D+V+YN+LI+  C  G+   A  ++  M K+    D +T
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFT 258

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LID   K G +  A    E M +   D ++  Y+ ++  L    ++D A  +F  M 
Sbjct: 259 FNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMV 318

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            K    D  TYS +++  CK+K++    KL     + GV
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGV 357



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I++NG CK++  ++ +++F  + + G V   VTY ILI+G C+AG+L  A  I
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEI 383

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +   G  PN ITY  ++     N K +  L IL+ M++ G   D   Y  +I    K
Sbjct: 384 FRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCK 443

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            G + +A D    +   G+  DI +Y T++    K+G    A  L  +M++ G
Sbjct: 444 AGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDG 496



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 96/207 (46%), Gaps = 5/207 (2%)

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
           R+ Y+ +G  Y  ++   ++  +L ++ D    MV       I  ++ L++   K  K +
Sbjct: 40  RRAYS-NGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYD 98

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
               L ++M+  G   +  T  IL++  C+   +  A   L  M K+G + ++  +  ++
Sbjct: 99  VVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLL 158

Query: 228 DRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +   +  ++  A+ +F+ M       +   Y++++  LCK+K++ +A  LL    K G+ 
Sbjct: 159 NGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIG 218

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKIQS 310
                  +++ GL  SG   +A ++ S
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVS 245



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+NI++ G+CK     +A  ++  L   G +P++ TY  ++ GL K G  R A  + ++
Sbjct: 432 VTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRK 491

Query: 71  LGDSGHAPN 79
           + + G  PN
Sbjct: 492 MKEDGILPN 500


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 151/310 (48%), Gaps = 14/310 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+N++++G+C     D AL +F+ ++  G  P   T+NILI   CK G+
Sbjct: 211 MLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGK 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +LK + D GH P+ +TY+T++       +      +L  M ++          T
Sbjct: 271 LDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNT 330

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+KEA + ++ MV+ G   D+V+YNTL++ +C+ G+ E A  LL +M  +G
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 390

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T L+ GLCKA  +  A      M   G   NL  Y  ++      G++D  +
Sbjct: 391 LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGL 450

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ------K 290
            +F  M       D   Y ++   LCK+ R    S   L  L+ G   L+S        +
Sbjct: 451 KLFGEMVCAGISPDHVVYGTLAAELCKSGR----SARALEILREGRESLRSEAWGDEVYR 506

Query: 291 AVVDGLRHSG 300
             VDGL  +G
Sbjct: 507 FAVDGLLEAG 516



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 148/307 (48%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP T  +  +++GLC     D+A  +F  + + G  P  VTYN++I   CK G L  A 
Sbjct: 41  VTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEAC 100

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++K++ + GH P+ +TY T+M    ++ + +  L + + M+R G T +   + T+I   
Sbjct: 101 DLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGL 160

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  ++ +A     +M    +  D  SY  LI+   K GKL  AY L   M   G     
Sbjct: 161 CQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSA 220

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ ++I G+C A  +  A    + M   G   +   +N ++D   K GK+D A  + + 
Sbjct: 221 VTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKR 280

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V D  TYS+++  LC   R+  A  LL   +K   +     Q  ++ GL  +G 
Sbjct: 281 MTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR 340

Query: 302 RREAKKI 308
            +EA+++
Sbjct: 341 IKEAREV 347



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 147/314 (46%), Gaps = 39/314 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-------------------------- 40
            P   T+N +++GLCK+   + AL +F  +++ G                          
Sbjct: 112 VPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQ 171

Query: 41  ---------FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
                      P+  +Y ILI GL KAG+L  A  + + + DSG  P+A+TY  ++    
Sbjct: 172 VFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMC 231

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
                   LE+  +M+ KG     F +  +I A  K G+L EA   +++M  DG   D+V
Sbjct: 232 LAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVV 291

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y+TLI+  C   +++ A  LL++M K+  +    T   LI GLCKAG IK AR  L+ M
Sbjct: 292 TYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
              G   ++  YN +V    + G+ + A  +   M  +    +  TY+++V  LCKA RL
Sbjct: 352 VSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 411

Query: 268 PSASKLLLSCLKSG 281
           P A  +      SG
Sbjct: 412 PEACGVFAQMKSSG 425



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 136/282 (48%), Gaps = 4/282 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+ P + ++ I+++GL K    + A ++F+ +   G  P  VTYN++I G+C A  L  A
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + K +   G  P+  T+  ++    +  K      +L  M   G+  D   Y T+I+ 
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISG 299

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
              I R+ +A   +E MV    +  +V+ NTLI+  CK G+++ A  +LD M   G   D
Sbjct: 300 LCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  L+ G C+AG  + AR  L  M   G   N+  Y  +V  L K  ++  A  VF 
Sbjct: 360 VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFA 419

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            M+      + FTY++++   C A ++    KL    + +G+
Sbjct: 420 QMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI 461



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 129/252 (51%), Gaps = 4/252 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + +    P+  +Y ILI GL KAG+L  AR + ++L  SG  P+ + YT+++        
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
           +    E+ + M R+G       Y  +I A  K G L+EA D +++M+ DG   D+V+YNT
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +++  CK  ++E A LL +EME+ G   ++ +H  +I GLC+   I  A      M    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
              +  +Y  ++D L K GK++ A  +F+ M        + TY+ ++H +C A  L  A 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 272 KLLLSCLKSGVR 283
           +L  S    G R
Sbjct: 241 ELFKSMRSKGCR 252



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 6/311 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFNI+++  CK    D A R+ + +   G VP++VTY+ LI GLC   R+  AR +
Sbjct: 253 PSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 312

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      P  +T  T++    +  + K   E+L AM   G + D   Y T++    +
Sbjct: 313 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 372

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ + A + +  MV  G+  ++V+Y  L++  CK  +L  A  +  +M+  G   + +T
Sbjct: 373 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT 432

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---- 243
           +T LI G C AG + G       M   G   +   Y  +   L K G+   A+ +     
Sbjct: 433 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 492

Query: 244 ESM--EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ES+  E      Y   V  L +A ++  A   +   ++ G         ++V GL  SG 
Sbjct: 493 ESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQ 552

Query: 302 RREAKKIQSKI 312
             EA+ +  +I
Sbjct: 553 GGEARAVLEEI 563



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 39/230 (16%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M  +  + D + Y  +I    K G+L +A +  ++++  GV    V+Y +LI+  C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILI--------------------------------- 192
            + A  L  +M ++G      T+ ++I                                 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 193 --DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
             DGLCK+  ++ A L    M ++G   N  ++N I+  L +  KID A  VF  ME K 
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              DS++Y  ++  L KA +L  A KL    L SG+         V+ G+
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGM 230


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 140/273 (51%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGL    + D+A R+F  ++     P++VTYN +IKG CKAG+ + A 
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKAL 277

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+ +   G   + ITY T+++ C+ +  +   + +   M  KG       +  VI   
Sbjct: 278 EKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGL 337

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L E     E M+  G + ++  Y  LI+ Y K G +E A  LL  M  +GF  D 
Sbjct: 338 CKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDV 397

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++++++GLCK G ++ A  + +     G   N   Y+ ++D LGK G++D A  +FE 
Sbjct: 398 VTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEE 457

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    DS+ Y++++    K  ++  A  L 
Sbjct: 458 MSEKGCTRDSYCYNALIDAFTKHGKVDEALALF 490



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 145/317 (45%), Gaps = 5/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M  G + P   T+N M+ G CK   T  AL   R ++  G   + +TY  +I+       
Sbjct: 248 MESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSD 307

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             +   + +E+ + G       ++ ++    +  K   G  +   M RKG   +   Y  
Sbjct: 308 FSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTV 367

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G +++A   + +M+ +G   D+V+Y+ ++N  CK G++E A          G
Sbjct: 368 LIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNG 427

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +   ++ LIDGL KAG +  A    E M++ G   +   YN ++D   K GK+D A+
Sbjct: 428 LAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAL 487

Query: 241 NVFESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +F+ ME ++      +TY+ ++  + K  R   A KL    +  G+    +  +A+  G
Sbjct: 488 ALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTG 547

Query: 296 LRHSGCRREAKKIQSKI 312
           L  SG    A KI  ++
Sbjct: 548 LCLSGKVARACKILDEL 564



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 4/296 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N ++    K    +  L ++R ++++G  P L TYN L+ GL  A  + +A  + + +  
Sbjct: 191 NSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
               P+ +TY T++K   +  + +  LE L  M+ KG   D   Y T+I A         
Sbjct: 251 GRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSS 310

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
                ++M   G+Q+   +++ +I   CKEGKL   Y + + M ++G + +   +T+LID
Sbjct: 311 CVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 370

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           G  K G+++ A   L  M   GF+ ++  Y+ +V+ L K+G+++ A++ F++        
Sbjct: 371 GYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAI 430

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           +S  YSS++  L KA R+  A +L     + G         A++D     G   EA
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEA 486



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 130/294 (44%), Gaps = 6/294 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F++++ GLCK    +    +F  + + G  P +  Y +LI G  K G +  A  +L  +
Sbjct: 329 AFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRM 388

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  P+ +TY+ ++    +N + +  ++     +  G   +   Y ++I    K GR+
Sbjct: 389 IDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRV 448

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHT 189
            EA    E+M   G   D   YN LI+ + K GK++ A  L   ME++   CD+  YT+T
Sbjct: 449 DEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEE-GCDQTVYTYT 507

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SM 246
           ILI G+ K    + A    + M   G          +   L   GK+  A  + +    M
Sbjct: 508 ILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDELAPM 567

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            V        M++ LCKA R+  A KL     + G  +    +  +++ LR  G
Sbjct: 568 GVILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVG 621



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 126/277 (45%), Gaps = 4/277 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++K  F   +   N LIK   K G +    W+ +++ ++G  P   TY  +M        
Sbjct: 178 IRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMF 237

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                 +   M+      D   Y T+I  + K G+ ++A + +  M T G++ D ++Y T
Sbjct: 238 VDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMT 297

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +I     +    +   L  EM+++G +   +  +++I GLCK G +       E M + G
Sbjct: 298 MIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKG 357

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              N+  Y  ++D   K G ++ AI +   M  +    D  TYS +V+ LCK  R+  A 
Sbjct: 358 SKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAM 417

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               +C  +G+ I      +++DGL  +G   EA+++
Sbjct: 418 DYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERL 454



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 2/246 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+++++NGLCKN   + A+  F+  + +G     + Y+ LI GL KAGR
Sbjct: 388 MIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 447

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYC 119
           +  A  + +E+ + G   ++  Y  ++    ++ K    L +   M + +G     + Y 
Sbjct: 448 VDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYT 507

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I+   K  R +EA    + M+  G+         L    C  GK+  A  +LDE+   
Sbjct: 508 ILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDELAPM 567

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D      +I+ LCKAG IK A    + + + G +        +++ L K GK D A
Sbjct: 568 GVILDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLA 626

Query: 240 INVFES 245
           + +  S
Sbjct: 627 MKLMHS 632


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 158/311 (50%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++G CK    D+A+ +   +   G VP +VTY +++ GLCK G++  A 
Sbjct: 336 MMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEAD 395

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +   G   N + YTT++   F N   +  L++L+ MK KG   D   Y T+I   
Sbjct: 396 NVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGL 455

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA   + +M   G++ + V Y T+++   K GK   A  LL ++   GF+ + 
Sbjct: 456 CKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNV 515

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDGLCKAG+I  A  H   M ++G D N++AY  ++D   K G ++ A+++   
Sbjct: 516 VTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNE 575

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D   Y+S++    K   L  A  L    ++SG+++        + G  +   
Sbjct: 576 MIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNM 635

Query: 302 RREAKKIQSKI 312
            +EA+ + S++
Sbjct: 636 MQEARGVLSEM 646



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 151/310 (48%), Gaps = 4/310 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFNI+++ LCK      A  +F  ++  G  P++VTYN LI G  K G L     
Sbjct: 197 VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQ 256

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E+  SG A + +TY  ++ C  +  + +        MKR+G   +   + T + AF 
Sbjct: 257 LVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFC 316

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G ++EA     QM   G+  +  +Y +L++  CK G+L+ A +LLDEM  QG   +  
Sbjct: 317 KEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 376

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T+++DGLCK G +  A   L  M + G  +N   Y  ++     +   + A+++   M
Sbjct: 377 TYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQM 436

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + K    D   Y +++  LCK +++  A  LL      G+R        ++D L  +G  
Sbjct: 437 KNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKE 496

Query: 303 REAKKIQSKI 312
            EA  +  KI
Sbjct: 497 SEAVALLHKI 506



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 8/258 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T N +L  L +NR      R+F  L     VP + T+NI+I  LCK G L  AR
Sbjct: 165 VPPNTRTCNHILLRLARNRQGGLVRRLFDLLP----VPNVFTFNIVIDFLCKEGELVEAR 220

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G +P+ +TY +++    +    +   +++S M++ G   D   Y  +I  F
Sbjct: 221 ALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCF 280

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+++A  Y  +M   GV  ++V+++T ++ +CKEG ++ A  L  +M  +G   ++
Sbjct: 281 SKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNE 340

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+T L+DG CKAG +  A + L+ M   G   N+  Y  +VD L K+GK+  A NV   
Sbjct: 341 FTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSL 400

Query: 246 ME---VK-DSFTYSSMVH 259
           ME   VK +   Y++++H
Sbjct: 401 MERGGVKANELLYTTLIH 418



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 114/238 (47%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            + +  ++ GLCK++  D A  +   +   G  P  V Y  ++  L KAG+   A  +L 
Sbjct: 445 VSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLH 504

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++ DSG  PN +TY  ++    +       +   + M+  G   +   Y  +I  F KIG
Sbjct: 505 KILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIG 564

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L +A   M +M+  G+ LD V Y +LI+ Y K+  L+ A+ L  +M + G + D Y +T
Sbjct: 565 SLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYT 624

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             I G C    ++ AR  L  M   G   +   YNC++ +  K G ++ A ++   ME
Sbjct: 625 CFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEME 682



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK      A+  F  +++ G  P +  Y  LI G CK G L  A  +
Sbjct: 513 PNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHL 572

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+ D G + + + YT+++    +    +    + + M   G   D + Y   I+ F  
Sbjct: 573 MNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCN 632

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +  ++EA   + +M+  G+  D   YN LI  Y K G +E A  L +EME     C
Sbjct: 633 MNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESVLSSC 688


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 149/308 (48%), Gaps = 9/308 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    F +++NGLC+ +  D A  +     + G  P+ VTYN+ I GLCKA R+  A  
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK++ +    P  +TYT ++    +  +    + +L  M  KG +     Y  VI    
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--- 183
           K GR++EA      M+ +G + D   Y  LI   CK GK E AY L  E   +       
Sbjct: 124 KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAV 183

Query: 184 -DKYTHTILIDGLCKAGNIKGAR-LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            D  T+T LIDGLCKAG I  AR +  +   + GF  +   Y  I+D L K G+++    
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
            F  M  +    D+ TY++++    KAK +P A ++    L+SG  +       ++DGL 
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303

Query: 298 HSGCRREA 305
            +G   EA
Sbjct: 304 KAGRVAEA 311



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 14/305 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFR--GLQKH--GFVPELVTYNILIKGLCKAGRLRT 63
           P    +  ++ GLCK+   + A  +++    +KH    VP++VTY  LI GLCKAGR+  
Sbjct: 145 PDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILE 204

Query: 64  ARWILK-ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           AR +   E  + G  P+A+TYT+I+    +  + + G E    M+ +GY  D   Y  +I
Sbjct: 205 ARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 264

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F+K   + +A     QM+  G  +  V+YN +++  CK G++  AY     ME++G  
Sbjct: 265 DGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 324

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
               T++ L+DG C  GN+  A      M   G + NL +YN I+  L + GK+  A   
Sbjct: 325 ATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFY 384

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSAS---KLLLSCLKSGVRILKSAQKAVVDG 295
           FE +  +    D +T+++ +H LC  +RL + S   +L  S +  G      +   ++DG
Sbjct: 385 FEKLLQRRLCPDVYTFNAFLHGLC--QRLDTVSDGVELFESMVSQGTSPNLHSYSILMDG 442

Query: 296 LRHSG 300
           +  +G
Sbjct: 443 ICRAG 447



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 144/302 (47%), Gaps = 9/302 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+ ++GLCK    D+A ++ + + +   +P  VTY  L+ GL KAGRL  A  +
Sbjct: 40  PDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAV 99

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ + G++P   TYT ++    +  + +    I   M   G   D F Y  +I    K
Sbjct: 100 LEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCK 159

Query: 128 IGRLKEATDYMEQMVT----DGVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFE 182
            G+ +EA    ++            D+V+Y +LI+  CK G+ LEA  +  DE  ++GF 
Sbjct: 160 SGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFI 219

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+T +IDGLCK G ++        M   G++ +   Y  ++D   K   I  A  V
Sbjct: 220 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRV 279

Query: 243 FESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           +  M     V  + TY+ ++  LCKA R+  A    L+  + G         A++DG   
Sbjct: 280 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCS 339

Query: 299 SG 300
            G
Sbjct: 340 EG 341



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 132/270 (48%), Gaps = 4/270 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++G  K +    A R++R + + G V   VTYNI++ GLCKAGR+  A   
Sbjct: 255 PDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYAT 314

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + + G     +TY+ +M            +E+   M  +G   +   Y  +I    +
Sbjct: 315 FLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 374

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE-GKLEAAYLLLDEMEKQGFECDKY 186
            G+L +A  Y E+++   +  D+ ++N  ++  C+    +     L + M  QG   + +
Sbjct: 375 AGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLH 434

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +++IL+DG+C+AG ++ A      M   G   ++  +N ++  L   G++D A+ VF  +
Sbjct: 435 SYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL 494

Query: 247 E---VKDSFTYSSMVHNLCKAKRLPSASKL 273
           E     D+++Y S++  L + +R+  A  L
Sbjct: 495 ERRSAPDAWSYWSLLDGLSRCERMEEARLL 524



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 2/130 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           L P   TFN  L+GLC+   T  + + +F  +   G  P L +Y+IL+ G+C+AG L  A
Sbjct: 393 LCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVA 452

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             I +E+   G AP+ + + T+++      +    LE+   ++R+    D + Y +++  
Sbjct: 453 LEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAP-DAWSYWSLLDG 511

Query: 125 FVKIGRLKEA 134
             +  R++EA
Sbjct: 512 LSRCERMEEA 521



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   +++I+++G+C+    + AL +FR +   G  P++V +N LI+ LC AGR
Sbjct: 424 MVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGR 483

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM 87
           +  A  + +EL +   AP+A +Y +++
Sbjct: 484 VDEALEVFREL-ERRSAPDAWSYWSLL 509



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D    T++I+GLC+   +  A   LE   + G + +   YN  +D L K  ++D A  + 
Sbjct: 6   DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLL 65

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M+ K     + TY+++V  L KA RL  A  +L   ++ G          V+DGL  +
Sbjct: 66  KKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKA 125

Query: 300 GCRREAKKI 308
           G   EA++I
Sbjct: 126 GRVEEARRI 134


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 152/293 (51%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  ++ GLC       AL     +   GF  + V Y  LI GLCK G  R A  +
Sbjct: 125 PNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDL 184

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +  +   PN + Y+TI+    +++      ++ S M  KG + +   Y  +I+ F  
Sbjct: 185 LRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFT 244

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LK+A D   +M+ + ++ D+ ++N L++ +CK+GK++    +   M KQG + +  T
Sbjct: 245 VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 304

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A+  L  M++ G + ++++YN ++D   K  K+D A+N+F+ M 
Sbjct: 305 YCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMH 364

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               + D  TY+S++  LCK  ++  A KL+      GV        +++D L
Sbjct: 365 HKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDAL 417



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 156/312 (50%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++G+CK+++ ++A  ++  +   G  P +VTY+ LI G    G+L+ A 
Sbjct: 193 VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAI 252

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+  T+  ++    ++ K K G  + + M ++G   +   YC+++  +
Sbjct: 253 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 312

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +  + +A   +  M   GV  DI SYN LI+ +CK  K++ A  L  EM  +    D 
Sbjct: 313 CLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDV 372

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDGLCK G I  A   ++ M+  G   ++  Y+ I+D L K+ ++D AI +   
Sbjct: 373 VTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTK 432

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++ +    + +TY+ ++  LCK  RL  A  +    L  G  I  +    ++ G  + G 
Sbjct: 433 LKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGL 492

Query: 302 RREAKKIQSKIR 313
             EA  + SK++
Sbjct: 493 FDEALALLSKMK 504



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 9/291 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ +++G        +A+ +F  +      P++ T+NIL+ G CK G+
Sbjct: 223 MVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 282

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++  + +   +   G  PN +TY ++M      ++      IL  M ++G   D   Y  
Sbjct: 283 MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNI 342

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F KI ++ EA +  ++M    +  D+V+YN+LI+  CK GK+  A  L+DEM  +G
Sbjct: 343 LIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 402

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ ++D LCK   +  A   L  +   G   N+  Y  ++D L K G+++ A 
Sbjct: 403 VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAH 462

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL-----SCLKSGV 282
           N+FE + VK       TY+ M+H  C       A  LL      SC+   V
Sbjct: 463 NIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAV 513



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 4/277 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TFNI+++G CK+        +F  + K G  P +VTY  L+ G C    
Sbjct: 258 MILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKE 317

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ IL  +   G  P+  +Y  ++    + +K    + +   M  K    D   Y +
Sbjct: 318 VNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNS 377

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+G++  A   +++M   GV  DI++Y+++++  CK  +++ A  LL +++ QG
Sbjct: 378 LIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQG 437

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + YT+TILIDGLCK G ++ A    E +   G++  +  Y  ++      G  D A+
Sbjct: 438 IRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAL 497

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            +   M+    + D+ TY  ++ +L        A KL
Sbjct: 498 ALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKL 534



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 115/261 (44%), Gaps = 25/261 (9%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A  +F  L +    P  + +N ++  L K+    T   + +++   G  P    +    
Sbjct: 59  DAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQ--- 115

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
                              +  GY  +   + T+I      G++ +A  + + +V  G Q
Sbjct: 116 ----------------HPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQ 159

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RL 206
           LD V Y TLI+  CK G+  AA  LL  ++    + +   ++ +IDG+CK  ++  A  L
Sbjct: 160 LDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDL 219

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
           + E ++K G   N+  Y+ ++      G++  AI++F  M ++    D +T++ +V   C
Sbjct: 220 YSEMVSK-GISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFC 278

Query: 263 KAKRLPSASKLLLSCLKSGVR 283
           K  ++     +    +K G++
Sbjct: 279 KDGKMKEGKTVFAMMMKQGIK 299



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 47/255 (18%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N I Y++I      N        + S + R+  T     +  ++ + VK           
Sbjct: 40  NFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLS 99

Query: 139 EQMVTDGV-----------QL-----DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +QM  +G+           QL     + +++ TLI   C +G++  A L  D +   GF+
Sbjct: 100 QQMEFEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQ 159

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D+  +  LI GLCK G  + A   L+ + ++  D NL   N ++               
Sbjct: 160 LDQVGYGTLIHGLCKVGETRAA---LDLLRRV--DGNLVQPNVVM--------------- 199

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                      YS+++  +CK K +  A  L    +  G+        A++ G    G  
Sbjct: 200 -----------YSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQL 248

Query: 303 REAKKIQSKIRMAKI 317
           ++A  + +K+ +  I
Sbjct: 249 KDAIDLFNKMILENI 263


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 154/316 (48%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN ++NGLC       A+ +F  +   G  P +++YN +I GLCK G    A 
Sbjct: 162 IQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAV 221

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++  +   PN +TY TI+    ++R     +E LS M  +G   D   Y T++  F
Sbjct: 222 RVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGF 281

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +G+L EAT   ++MV   V  D V++N L++  CKEG +  A  + + M ++G E + 
Sbjct: 282 CSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNA 341

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+  L+DG C    +  A   L  M   G   NL +YN +++   K  +++ A  +   
Sbjct: 342 YTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSE 401

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D+ TYS+++  LC+  R   A  L      SG+     A   ++DG    G 
Sbjct: 402 MSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGH 461

Query: 302 RREAKKIQSKIRMAKI 317
             EA K+  ++   +I
Sbjct: 462 LDEALKLLKEMHERRI 477



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 151/313 (48%), Gaps = 39/313 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +L+G C     + A R+F+ +     +P+ VT+NIL+ GLCK G 
Sbjct: 262 MVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGM 321

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYK----LGLEI------------- 102
           +  AR + + + + G  PNA TY  +M   C  N+  +    LG+ I             
Sbjct: 322 VSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNI 381

Query: 103 -----------------LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                            LS M  K  T D   Y T++    ++GR +EA +  ++M + G
Sbjct: 382 LINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSG 441

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  D+++Y+ L++ +CK G L+ A  LL EM ++  + +   +TILI G+  AG ++ A+
Sbjct: 442 LLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAK 501

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                ++  G   ++  YN ++  L K+G  D A   F  ME    + DS +Y+ ++   
Sbjct: 502 ELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGF 561

Query: 262 CKAKRLPSASKLL 274
            + +   +A +L+
Sbjct: 562 LQNQDSSTAIQLI 574



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 98/189 (51%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +LTP T T++ ++ GLC+      AL +F+ +   G +P+L+ Y+IL+ G CK G L  A
Sbjct: 406 NLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEA 465

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +LKE+ +    PN I YT +++  F   K ++  E+ S +   G   D + Y  +I  
Sbjct: 466 LKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKG 525

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            +K G   EA ++  +M  DG   D  SYN +I  + +      A  L+DEM  + F  D
Sbjct: 526 LLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSAD 585

Query: 185 KYTHTILID 193
             T  +L+D
Sbjct: 586 SSTFQMLLD 594



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 115/233 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P  +++NI++NG CK++  + A R+   + +    P+ VTY+ L++GLC+ GR
Sbjct: 367 MIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGR 426

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R A  + KE+  SG  P+ + Y+ ++    ++      L++L  M  +    +   Y  
Sbjct: 427 PREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTI 486

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G+L+ A +   ++  DG++ DI +YN +I    KEG  + AY    +ME  G
Sbjct: 487 LIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDG 546

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
           F  D  ++ ++I G  +  +   A   ++ M    F ++   +  ++D    D
Sbjct: 547 FLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESHD 599



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 39/305 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           + N+++N LC+  + D A+ +   + K G  P+ +T+N LI GLC  G+++ A  +  E+
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEM 192

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SGH PN I+Y                                    TVI    K G  
Sbjct: 193 VWSGHEPNVISYN-----------------------------------TVINGLCKNGNT 217

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A     +M  +  + ++V+YNT+I+  CK+  +  A   L EM  +G   D  T+  +
Sbjct: 218 IMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTI 277

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           + G C  G +  A    + M       +   +N +VD L K+G +  A  V E+M  K  
Sbjct: 278 LHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGA 337

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             +++TY++++   C   ++  A K+L   +  G     S+   +++G   S    EAK+
Sbjct: 338 EPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKR 397

Query: 308 IQSKI 312
           + S++
Sbjct: 398 LLSEM 402



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 4/273 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+AL  F  + +    P +V +   +  + K  +  +A  +  ++   G   N  +   +
Sbjct: 78  DDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVL 137

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R       + ++  M + G   D   + T+I      G++KEA     +MV  G 
Sbjct: 138 INCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGH 197

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + +++SYNT+IN  CK G    A  +  +ME+   + +  T+  +ID LCK   +  A  
Sbjct: 198 EPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVE 257

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLC 262
            L  M   G   ++  YN I+      G+++ A  +F+ M     + D+ T++ +V  LC
Sbjct: 258 FLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLC 317

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           K   +  A  +  +  + G         A++DG
Sbjct: 318 KEGMVSEARCVSETMTEKGAEPNAYTYNALMDG 350



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + +A     +MV    +  +V +   +    K+ +  +A  L ++M+  G   + Y+  +
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNV 136

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           LI+ LC+  ++  A   +  M K+G   +   +N +++ L  +GKI  A+ +F  M    
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSG 196

Query: 247 EVKDSFTYSSMVHNLCK 263
              +  +Y+++++ LCK
Sbjct: 197 HEPNVISYNTVINGLCK 213


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 142/281 (50%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG CK+   +   R+   +++    P++ TY+ LI GLCK  +L  A 
Sbjct: 263 LQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDAN 322

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+ D G  PN +T+TT++    +N +  L LEI   M  KG   D   Y T+I   
Sbjct: 323 HLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGL 382

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  +EA  ++ +M   G+  D  +Y TL++  CKEG LE A  +  EM K+G + D 
Sbjct: 383 CKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDN 442

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T +I GLC+ G I  A   L  M + G   +   Y  ++D   K G +     + + 
Sbjct: 443 VAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKE 502

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M+    +    TY+ +++ LCK  ++ +A  LL + L  GV
Sbjct: 503 MQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGV 543



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 137/262 (52%), Gaps = 1/262 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  ++NG CKN   D AL +++ +   G   +LV YN LI GLCK G  R AR
Sbjct: 333 LVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREAR 392

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + E+   G  P+  TYTT++    +    +L LE+   M ++G   D   +  +I+  
Sbjct: 393 KFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGL 452

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G++ +A   + +M+  G++ D  +Y  +++ +CK+G ++  + LL EM+  G     
Sbjct: 453 CRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGV 512

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ +L++GLCK G +K A + L  M  +G   +   YN ++    K GK+    NV   
Sbjct: 513 ITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTE 572

Query: 246 ME-VKDSFTYSSMVHNLCKAKR 266
           M  V D  +Y S++H L KA +
Sbjct: 573 MGLVSDYASYRSLLHELSKASK 594



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 138/272 (50%), Gaps = 4/272 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL  +  +   G+ P + T+N+L+  LCK G+++ A+ I  E+  +G  P A+++ T++ 
Sbjct: 216 ALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLIN 275

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              ++   + G  +   M+      D F Y  +I    K  +L++A    ++M   G+  
Sbjct: 276 GYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVP 335

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           + V++ TLIN  CK G+++ A  +  +M  +G + D   +  LIDGLCK G  + AR  +
Sbjct: 336 NDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFV 395

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M K G   +   Y  ++D   K+G ++ A+ + + M  +    D+  +++++  LC+ 
Sbjct: 396 GEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRD 455

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ++  A + L   L++G++        V+DG 
Sbjct: 456 GKIVDAERTLREMLRAGLKPDDGTYTMVMDGF 487



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 4/300 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F+ +++   +  Y  +A++ FR  +KH           L++ + K      A     E+
Sbjct: 164 VFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEI 223

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            DSG+ PN  T+  +M    +  K K    I   +++ G       + T+I  + K G L
Sbjct: 224 LDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNL 283

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +E       M    V  D+ +Y+ LI+  CKE +LE A  L  EM  +G   +  T T L
Sbjct: 284 EEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTL 343

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I+G CK G +  A    + M   G  ++L  YN ++D L K G    A      M     
Sbjct: 344 INGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGL 403

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + D FTY++++   CK   L  A ++    +K G+++   A  A++ GL   G   +A++
Sbjct: 404 IPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAER 463



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 8/108 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+ ++++G CK        ++ + +Q  G +P ++TYN+L+ GLCK G+
Sbjct: 468 MLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQ 527

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC-C-------FRNRKYKLGL 100
           ++ A  +L  + + G  P+ ITY  +++  C       F+N K ++GL
Sbjct: 528 VKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEMGL 575


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 39/349 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN +LNGLC       AL +   + + G  P L+T N L+ GLC  G++  A  +
Sbjct: 156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVL 215

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  + ++G  PN +TY  ++    ++ +  L +E+L  M+ +    D   Y  +I    K
Sbjct: 216 IDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-------------------------- 161
            G L  A +   +M   G + DI++YNTLI  +C                          
Sbjct: 276 DGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT 335

Query: 162 ---------KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                    KEGKL  A  LL EM ++G   +  T+  LIDG CK   ++ A   ++ M 
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
             G D ++  +N +++   K  +ID  + +F  M ++    ++ TY+++V   C++ +L 
Sbjct: 396 SKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLE 455

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            A KL    +   VR    + K ++DGL  +G   +A +I  KI  +K+
Sbjct: 456 VAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKM 504



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++I+++GLCK+   DNA  +F  ++  GF  +++TYN LI G C AGR      +L+++ 
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
               +PN +T++ ++    +  K +   ++L  M ++G   +   Y ++I  F K  RL+
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   ++ M++ G   DI+++N LIN YCK  +++    L  EM  +G   +  T+  L+
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            G C++G ++ A+   + M       ++ +Y  ++D L  +G+++ A+ +F  +E     
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKME 505

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            D   Y  ++H +C A ++  A  L  S    GV++   A   ++  L    CR+++
Sbjct: 506 LDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISEL----CRKDS 558



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 4/274 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++ G C     D+  ++ R + K    P +VT+++LI    K G+LR A  +LKE+
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G APN ITY +++    +  + +  ++++  M  KG   D   +  +I  + K  R+
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +  +   +M   GV  + V+YNTL+  +C+ GKLE A  L  EM  +    D  ++ IL
Sbjct: 420 DDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKIL 479

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +DGLC  G ++ A      + K   + ++  Y  I+  +    K+D A ++F S+ +K  
Sbjct: 480 LDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGV 539

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             D+  Y+ M+  LC+   L  A  L     + G
Sbjct: 540 KLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 142/278 (51%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  +LN +CK+  T  A+ + R +++     + V Y+I+I GLCK G 
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  E+   G   + ITY T++       ++  G ++L  M ++  + +   +  
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +FVK G+L+EA   +++M+  G+  + ++YN+LI+ +CKE +LE A  ++D M  +G
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T  ILI+G CKA  I         M+  G  +N   YN +V    + GK++ A 
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +F+ M  +    D  +Y  ++  LC    L  A ++ 
Sbjct: 459 KLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIF 496



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T +IM+N  C+ R    A      + K G+ P+ V +N L+ GLC   R+  A  ++  +
Sbjct: 125 TLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRM 184

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + GH P  IT  T++     N K    + ++  M   G+  +   Y  V+    K G+ 
Sbjct: 185 VEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQT 244

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++LD V Y+ +I+  CK+G L+ A+ L +EME +GF+ D  T+  L
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTL 304

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I G C AG        L  M K     N+  ++ ++D   K+GK+  A  + + M     
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI 364

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             ++ TY+S++   CK  RL  A +++
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMV 391



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 4/286 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +FR + +   +P ++ +N L   + K  +      + K++   G A +  T + +
Sbjct: 70  DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIM 129

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R RK       +  + + GY  D   + T++       R+ EA + +++MV  G 
Sbjct: 130 INCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH 189

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           +  +++ NTL+N  C  GK+  A +L+D M + GF+ ++ T+  +++ +CK+G    A  
Sbjct: 190 KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAME 249

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L  M +     +   Y+ I+D L KDG +D+A N+F  ME+K    D  TY++++   C
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFC 309

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            A R    +KLL   +K  +         ++D     G  REA ++
Sbjct: 310 NAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQL 355



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   TF+++++   K      A ++ + + + G  P  +TYN LI G CK  R
Sbjct: 324 MIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENR 383

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++  +   G  P+ +T+  ++    +  +   GLE+   M  +G   +   Y T
Sbjct: 384 LEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNT 443

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G+L+ A    ++MV+  V+ DIVSY  L++  C  G+LE A  +  ++EK  
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D   + I+I G+C A  +  A      +   G   +  AYN ++  L +   +  A 
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKAD 563

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M       D  TY+ ++          +A++L+     SG     S  K V++ L
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINML 623



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 1/239 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TFNI++NG CK    D+ L +FR +   G +   VTYN L++G C++G+
Sbjct: 394 MISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGK 453

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + +E+      P+ ++Y  ++     N + +  LEI   +++     D   Y  
Sbjct: 454 LEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMI 513

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I       ++ +A D    +   GV+LD  +YN +I+  C++  L  A +L  +M ++G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D+ T+ ILI       +   A   +E M   GF +++     +++ L   G++D +
Sbjct: 574 HAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSS-GELDKS 631



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NIM++ LC+      A  +FR + + G  P+ +TYNILI+         TA  +++E+ 
Sbjct: 546 YNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMK 605

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
            SG   +  T   ++         K  L++LS  +
Sbjct: 606 SSGFPADVSTVKMVINMLSSGELDKSFLDMLSTTR 640


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 159/317 (50%), Gaps = 9/317 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   T+  ++NGLCK    D A  +F  + K    P  V +N LI G    GR
Sbjct: 307 MLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PTSVIFNTLIHGFVTHGR 362

Query: 61  LRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A+ +L ++  S G  P+  TY +++   ++     L LE+L  M+ KG   + + Y 
Sbjct: 363 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYT 422

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++  F K+G++ EA + + +M  DG++ + V +N LI+ +CKE ++  A  +  EM ++
Sbjct: 423 ILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 482

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D YT   LI GLC+   IK A   L  M   G  +N   YN +++   + G+I  A
Sbjct: 483 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 542

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M  +    D  TY+S++  LC+A  +  A  L    L+ G+     +   +++G
Sbjct: 543 RKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILING 602

Query: 296 LRHSGCRREAKKIQSKI 312
           L  SG   EA + Q ++
Sbjct: 603 LCRSGMVEEAVEFQKEM 619



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 163/348 (46%), Gaps = 36/348 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF +++  LC     D+AL + R + KHG VP  V Y  LI  L K  R
Sbjct: 202 MLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNR 261

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG--FGY 118
           +  A  +L+E+   G  P+A T+  ++    +  +     ++++ M  +G+T D   +GY
Sbjct: 262 VNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGY 321

Query: 119 C-----------------------------TVIAAFVKIGRLKEATDYMEQMVTD-GVQL 148
                                         T+I  FV  GRL +A   +  MVT  G+  
Sbjct: 322 LMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVP 381

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+ +YN+LI  Y K+G +  A  +L +M  +G + + Y++TIL+DG CK G I  A   L
Sbjct: 382 DVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLL 441

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M+  G   N   +NC++    K+ +I  A+ +F  M  K    D +T++S++  LC+ 
Sbjct: 442 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 501

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             +  A  LL   +  GV         +++     G  +EA+K+ +++
Sbjct: 502 DEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEM 549



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 142/266 (53%), Gaps = 4/266 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++ G  K      AL + R ++  G  P + +Y IL+ G CK G++  A 
Sbjct: 379 IVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAY 438

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+   G  PN + +  ++    +  +    +EI   M RKG   D + + ++I+  
Sbjct: 439 NLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGL 498

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++  +K A   +  M+++GV  + V+YNTLIN + + G+++ A  L++EM  QG   D+
Sbjct: 499 CEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDE 558

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI GLC+AG +  AR   E M + G   +  + N +++ L + G ++ A+   + 
Sbjct: 559 ITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKE 618

Query: 246 MEVK----DSFTYSSMVHNLCKAKRL 267
           M ++    D  T++S+++ LC+A R+
Sbjct: 619 MVLRGSTPDIVTFNSLINGLCRAGRI 644



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 4/266 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T  FN +++  CK      A+ +FR + + G  P++ T+N LI GLC+   ++ A 
Sbjct: 449 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 508

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+L+++   G   N +TY T++    R  + K   ++++ M  +G   D   Y ++I   
Sbjct: 509 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGL 568

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + +A    E+M+ DG+    +S N LIN  C+ G +E A     EM  +G   D 
Sbjct: 569 CRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 628

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI-DHAINVFE 244
            T   LI+GLC+AG I+        +   G   +   YN ++  L K G + D  + + E
Sbjct: 629 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDE 688

Query: 245 SME---VKDSFTYSSMVHNLCKAKRL 267
            +E   V +  T+S ++ +L   + L
Sbjct: 689 GIEDGFVPNDRTWSILLQSLVPQETL 714



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++ I+++G CK    D A  +   +   G  P  V +N LI   CK  R+  A  I
Sbjct: 416 PNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 475

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  P+  T+ +++       + K  L +L  M  +G   +   Y T+I AF++
Sbjct: 476 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 535

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +KEA   + +MV  G  LD ++YN+LI   C+ G+++ A  L ++M + G      +
Sbjct: 536 RGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSIS 595

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             ILI+GLC++G ++ A    + M   G   ++  +N +++ L + G+I+  + +F  ++
Sbjct: 596 CNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 655

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +    D+ TY++++  LCK   +  A  LL   ++ G
Sbjct: 656 AEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDG 693



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 112/230 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN +++GLC+     +AL + R +   G V   VTYN LI    + G ++ AR +
Sbjct: 486 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKL 545

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G   + ITY +++K   R  +      +   M R G          +I    +
Sbjct: 546 VNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCR 605

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++EA ++ ++MV  G   DIV++N+LIN  C+ G++E    +  +++ +G   D  T
Sbjct: 606 SGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVT 665

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           +  L+  LCK G +  A L L+   + GF  N   ++ ++  L     +D
Sbjct: 666 YNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQETLD 715



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 132/325 (40%), Gaps = 36/325 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N++L  L        A  +F  +      P L T+ +++K LC    + +A  +
Sbjct: 174 PTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSV 233

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++   G  PN++ Y T++    +  +    L++L  M   G   D   +  VI    K
Sbjct: 234 LRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK 293

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA------------------ 169
             R+ EA   + +M+  G   D ++Y  L+N  CK G+++AA                  
Sbjct: 294 FDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTL 353

Query: 170 --------------YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
                          +L D +   G   D  T+  LI G  K G +  A   L  M   G
Sbjct: 354 IHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKG 413

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSAS 271
              N+ +Y  +VD   K GKID A N+   M       ++  ++ ++   CK  R+P A 
Sbjct: 414 CKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAV 473

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGL 296
           ++     + G +       +++ GL
Sbjct: 474 EIFREMPRKGCKPDVYTFNSLISGL 498



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 108/264 (40%), Gaps = 1/264 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTARWILKE 70
            + +++  L  N       R+   ++  G V +   +  +++   KAG   +T R +L+ 
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 166

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
                  P   +Y  +++       +K+   +   M  +      F +  V+ A   +  
Sbjct: 167 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNE 226

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +  A   +  M   G   + V Y TLI+   K  ++  A  LL+EM   G   D  T   
Sbjct: 227 VDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 286

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           +I GLCK   I  A   +  M   GF  +   Y  +++ L K G++D A ++F  +    
Sbjct: 287 VILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPT 346

Query: 251 SFTYSSMVHNLCKAKRLPSASKLL 274
           S  +++++H      RL  A  +L
Sbjct: 347 SVIFNTLIHGFVTHGRLDDAKAVL 370


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 160/321 (49%), Gaps = 4/321 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +L GL +N   D A  +FR +   G  P++ ++N+LI G C+AG 
Sbjct: 220 MVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGE 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A    KE+      P+ ++++ ++    R  +     E L  M+  G   DG  Y  
Sbjct: 280 LEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTM 339

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F + G + EA    ++MV  G   D+V+YNTL+N  CKE +L  A  LL+EM+++G
Sbjct: 340 VIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T T LI G C+ GNI+ A    + ++      ++  YN ++D + + G +  A 
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKAN 459

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +++ M  ++ F    TYS ++ + C+  ++ +A   L   +  G+        +++ G 
Sbjct: 460 ELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGY 519

Query: 297 RHSGCRREAKKIQSKIRMAKI 317
             SG   + ++   K+R  K+
Sbjct: 520 CRSGNVSKGQQFLPKMRHDKV 540



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 131/257 (50%), Gaps = 4/257 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + +++ G C+      ALR+   +   G +P++VTYN L+ GLCK  RL  A 
Sbjct: 330 LMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAE 389

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+ + G  P+  T+TT++    R+   +  L+    +  +    D   Y T+I   
Sbjct: 390 ELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGM 449

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L +A +  + M +  +  + V+Y+ LI+ +C++G+++ A+  LDEM  +G   + 
Sbjct: 450 CRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNI 509

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I G C++GN+   +  L  M       +L  YN ++    K+GK+  A N+ + 
Sbjct: 510 MTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKI 569

Query: 246 ME----VKDSFTYSSMV 258
           ME      D+ TY+ ++
Sbjct: 570 MENENVQPDAVTYNMII 586



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T NIM++  CK         +   ++K    P++VT+N+++    +AG +  A  ++ 
Sbjct: 159 TYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALID 218

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P  +TY +++K   RN ++    E+  AM   G   D   +  +I  F + G
Sbjct: 219 SMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAG 278

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L+EA  + ++M    V  D+VS++ LI L+ + G+++ A   L EM + G   D   +T
Sbjct: 279 ELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYT 338

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           ++I G C+AG +  A    + M   G   ++  YN +++ L K+ ++  A  +   M+ +
Sbjct: 339 MVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKER 398

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D  T+++++H  C+   +  A +   +     +R        ++DG+   G   +A
Sbjct: 399 GVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKA 458

Query: 306 KKIQSKIRMAKI 317
            ++   +   +I
Sbjct: 459 NELWDDMHSREI 470



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 1/209 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G+C+      A  ++  +      P  VTY+ILI   C+ G++  A 
Sbjct: 435 LRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAF 494

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L E+ + G  PN +TY +I+K   R+     G + L  M+      D   Y T+I  +
Sbjct: 495 AFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGY 554

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK G++ EA + ++ M  + VQ D V+YN +I+ +   G ++ A  +  +M  +G E D+
Sbjct: 555 VKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDR 614

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNK 213
           YT+  +I+G   AGN K + +LH E + K
Sbjct: 615 YTYMSMINGHVVAGNSKKSFQLHDEMLQK 643



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 4/256 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +LNGLCK R   +A  +   +++ G  P+L T+  LI G C+ G +  A   
Sbjct: 367 PDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQF 426

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + D    P+ +TY T++    R        E+   M  +    +   Y  +I +  +
Sbjct: 427 FDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCE 486

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A  ++++MV  G+  +I++YN++I  YC+ G +      L +M       D  T
Sbjct: 487 KGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLIT 546

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G  K G +  A   L+ M       +   YN I+      G +  A  V++ M 
Sbjct: 547 YNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMG 606

Query: 248 VK----DSFTYSSMVH 259
            +    D +TY SM++
Sbjct: 607 ARGIEPDRYTYMSMIN 622



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 4/211 (1%)

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           I+  L  S   P    +  +++   ++RK +   E    +              ++AA  
Sbjct: 76  IVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALS 135

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G      D    +++   +++  + N +++ YCK  +      ++ EMEK+    D  
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVV 195

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           TH +++D   +AG+++ A   ++ M   G    L  YN ++  L ++G+ D A  VF +M
Sbjct: 196 THNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAM 255

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKL 273
           +      D  +++ ++   C+A  L  A + 
Sbjct: 256 DACGVAPDVRSFNMLIGGFCRAGELEEALRF 286


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 158/322 (49%), Gaps = 15/322 (4%)

Query: 6   LTPCTATFNIMLNGLCK-----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
             P   ++N +L+ L +     +R  D+A R+FR + ++G  P + TYN++I+G+   G 
Sbjct: 163 FAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGD 222

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L      ++++   G +PN +TY T++    + +K K  + +L AM   G   +   Y +
Sbjct: 223 LEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNS 282

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI      GR+ E  + +E+M   G+  D V+YNTL+N +CKEG L    +LL EM  +G
Sbjct: 283 VINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKG 342

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T LI+ +CKAGN+  A    + M   G   N   Y  ++D   + G ++ A 
Sbjct: 343 LSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAY 402

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   M V        TY+++VH  C   R+  A  +L   ++ G+     +   V+ G 
Sbjct: 403 KVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGF 462

Query: 297 RHSGCR-RE-AKKIQSKIRMAK 316
               CR RE  K  Q K  M +
Sbjct: 463 ----CRERELGKAFQMKEEMVE 480



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 6/301 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+N+++ G+      +  L   R ++K G  P +VTYN LI   CK  +
Sbjct: 198 MVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKK 257

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           ++ A  +L+ +   G A N I+Y +++   C + R  ++G E++  M+ KG   D   Y 
Sbjct: 258 VKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVG-ELVEEMRGKGLVPDEVTYN 316

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  F K G L +    + +MV  G+  ++V+Y TLIN  CK G L  A  + D+M  +
Sbjct: 317 TLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVR 376

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   ++ T+T LIDG C+ G +  A   L  M   GF  ++  YN +V      G++  A
Sbjct: 377 GLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEA 436

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + +   M  +    D  +YS+++   C+ + L  A ++    ++ GV        +++ G
Sbjct: 437 VGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQG 496

Query: 296 L 296
           L
Sbjct: 497 L 497



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 141/281 (50%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N +++  CK +    A+ + R +   G    L++YN +I GLC  GR+    
Sbjct: 238 ISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVG 297

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++E+   G  P+ +TY T++    +      GL +LS M  KG + +   Y T+I   
Sbjct: 298 ELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCM 357

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L  A +  +QM   G++ +  +Y TLI+ +C++G +  AY +L EM   GF    
Sbjct: 358 CKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSV 417

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+ G C  G ++ A   L  M + G   ++ +Y+ ++    ++ ++  A  + E 
Sbjct: 418 VTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEE 477

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M  K    D+ TYSS++  LC  ++L  A  L    ++ G+
Sbjct: 478 MVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGL 518



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 148/316 (46%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M  G +     ++N ++NGLC          +   ++  G VP+ VTYN L+ G CK G 
Sbjct: 268 MAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGN 327

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     +L E+   G +PN +TYTT++ C  +       +EI   M+ +G   +   Y T
Sbjct: 328 LHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTT 387

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F + G + EA   + +M+  G    +V+YN L++ YC  G+++ A  +L  M ++G
Sbjct: 388 LIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERG 447

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  +++ +I G C+   +  A    E M + G   +   Y+ ++  L    K+  A 
Sbjct: 448 LPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAF 507

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M  +    D  TY+S+++  C    L  A +L    ++ G          +++GL
Sbjct: 508 DLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGL 567

Query: 297 RHSGCRREAKKIQSKI 312
                 + AK++  K+
Sbjct: 568 NKKARTKVAKRLLLKL 583



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 145/322 (45%), Gaps = 36/322 (11%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +C      +A F++++  L +  +   AL +     +HGF P +++YN ++  L +    
Sbjct: 124 LCSSPFSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSS 183

Query: 62  R-----TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
                  A  + +++  +G +PN  TY  I++        + GL  +  M+++G + +  
Sbjct: 184 NHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVV 243

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y T+I A  K  ++KEA   +  M   GV  +++SYN++IN  C +G++     L++EM
Sbjct: 244 TYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEM 303

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G   D+ T+  L++G CK GN+    + L  M   G   N+                
Sbjct: 304 RGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNV---------------- 347

Query: 237 DHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                           TY+++++ +CKA  L  A ++       G+R  +     ++DG 
Sbjct: 348 ---------------VTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGF 392

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
              G   EA K+ S++ ++  S
Sbjct: 393 CQKGLMNEAYKVLSEMIVSGFS 414



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 126/279 (45%), Gaps = 15/279 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   T+N +++G C       A+ + RG+ + G  P++V+Y+ +I G C+   
Sbjct: 408 MIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERE 467

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + +E+ + G  P+ +TY+++++     +K     ++   M R+G   D   Y +
Sbjct: 468 LGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTS 527

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+   G L +A    ++MV  G   D V+Y+ LIN   K+ + + A  LL ++  + 
Sbjct: 528 LINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEE 587

Query: 181 FECDKYTHTILID---------------GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
              D  T+  LI+               G C  G +  A    + M +     N   YN 
Sbjct: 588 SVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNL 647

Query: 226 IVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA 264
           ++    + G +  A N++  +E      ++  V  L KA
Sbjct: 648 MIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKA 686



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 23/260 (8%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  ++N  C +     ALR+   + + GF+P+ VTY++LI GL K  R + A+
Sbjct: 518 LPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAK 577

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L +L      P+ +TY T+++ C  N ++K              + +G     ++  F
Sbjct: 578 RLLLKLFYEESVPDDVTYNTLIENC-SNNEFK--------------SVEG-----LVKGF 617

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G + EA    + M+    + +   YN +I+ + + G +  AY L  E+E   F C  
Sbjct: 618 CMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHT 677

Query: 186 YTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
                L+  L + G N + +RL    +     + + +    +V+   K+G +D  +NV  
Sbjct: 678 VAVIALVKALAREGMNDELSRLLQNILRSCRLN-DAKVAKVLVEVNFKEGNMDAVLNVLT 736

Query: 245 SMEVKDSFTYSSMVHNLCKA 264
            M  KD       +H+   A
Sbjct: 737 EM-AKDGLLPDGGIHSSAPA 755



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 15/204 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI-------- 52
           M+     P   T+++++NGL K   T  A R+   L     VP+ VTYN LI        
Sbjct: 548 MVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEF 607

Query: 53  -------KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
                  KG C  G +  A  + K +    H PNA  Y  ++    R         +   
Sbjct: 608 KSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYME 667

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           ++   +         ++ A  + G   E +  ++ ++      D      L+ +  KEG 
Sbjct: 668 LEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGN 727

Query: 166 LEAAYLLLDEMEKQGFECDKYTHT 189
           ++A   +L EM K G   D   H+
Sbjct: 728 MDAVLNVLTEMAKDGLLPDGGIHS 751


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 158/316 (50%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN ++NG C       A+ +F  + + G  P++++Y+ +I GLCK+G    A 
Sbjct: 158 IQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMAL 217

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+++ + G  PN + YTTI+    ++      +++LS M  +G   D   Y T++  F
Sbjct: 218 QLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGF 277

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +G L EAT    +MV   V  + V++  L++  CKEG +  A  + + M K+G E + 
Sbjct: 278 CSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNA 337

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+  L+DG C    +  A+  L+ M   G    + +YN +++   K  ++D A ++   
Sbjct: 338 YTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVE 397

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D+ TYS+++  LC+  R   A  L      SG+         ++DGL   G 
Sbjct: 398 MSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGH 457

Query: 302 RREAKKIQSKIRMAKI 317
             EA K+   ++ +KI
Sbjct: 458 LDEALKLLKSMQESKI 473



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 153/298 (51%), Gaps = 4/298 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           + NI++N LC+  +   A+ +   + K G  P+ +T+N LI G C  G ++ A  +  E+
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEM 188

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              GH P+ I+Y+T++    ++    + L++L  M+ KG   +   Y T+I +  K   +
Sbjct: 189 VRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLV 248

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D + +MV  G+  D+V+Y+T+++ +C  G L  A +L +EM  +    +  T TIL
Sbjct: 249 NDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTIL 308

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD- 250
           +DGLCK G +  AR   E M K G + N   YN ++D    + ++D A  V + M  K  
Sbjct: 309 VDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGC 368

Query: 251 ---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                +Y+ +++  CK +RL  A  LL+   +  +         ++ GL   G  +EA
Sbjct: 369 APVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEA 426



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 139/278 (50%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P T TF I+++GLCK      A  +F  + K G  P   TYN L+ G C   +
Sbjct: 293 MVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQ 352

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L  + D G AP   +Y  ++    + R+      +L  M  K  T D   Y T
Sbjct: 353 MDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYST 412

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    ++GR +EA +  ++M + G+  D+++Y+TL++  CK G L+ A  LL  M++  
Sbjct: 413 LMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESK 472

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D   + ILI+G+  AG ++ A+     +   G    +  Y  ++  L K+G  D A 
Sbjct: 473 IEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAY 532

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +F  ME    + +S +Y+ ++    + +   +A +L+
Sbjct: 533 ELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLI 570



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 4/267 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++ +L+G C   + + A  +F  +     +P  VT+ IL+ GLCK G 
Sbjct: 258 MVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGM 317

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR + + +   G  PNA TY  +M     N +     ++L  M  KG       Y  
Sbjct: 318 VSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNI 377

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K  RL EA   + +M    +  D V+Y+TL+   C+ G+ + A  L  EM   G
Sbjct: 378 LINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSG 437

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ L+DGLCK G++  A   L+ M +   + ++  YN +++ +   GK++ A 
Sbjct: 438 LLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAK 497

Query: 241 NVFESM---EVKDSF-TYSSMVHNLCK 263
            +F  +    ++ +  TY+ M+  L K
Sbjct: 498 ELFSKLFADGIQPTIRTYTIMIKGLLK 524



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 119/255 (46%), Gaps = 4/255 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++G C N   D A ++   +   G  P + +YNILI G CK  RL  A+ +
Sbjct: 335 PNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSL 394

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+ +    P+ +TY+T+M+   +  + +  L +   M   G   D   Y T++    K
Sbjct: 395 LVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCK 454

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L EA   ++ M    ++ DIV YN LI      GKLE A  L  ++   G +    T
Sbjct: 455 HGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRT 514

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +TI+I GL K G    A      M   GF  N  +YN I+    ++     AI + + M 
Sbjct: 515 YTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMV 574

Query: 248 VK----DSFTYSSMV 258
            K    DS T+  ++
Sbjct: 575 GKRFSADSSTFQMLL 589



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 113/226 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++NI++NG CK R  D A  +   + +    P+ VTY+ L++GLC+ GR + A  +
Sbjct: 370 PVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNL 429

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+  SG  P+ +TY+T++    ++      L++L +M+      D   Y  +I     
Sbjct: 430 FKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFI 489

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L+ A +   ++  DG+Q  I +Y  +I    KEG  + AY L  +ME  GF  +  +
Sbjct: 490 AGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCS 549

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
           + ++I G  +  +   A   ++ M    F ++   +  ++D   +D
Sbjct: 550 YNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDLESRD 595



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 4/286 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+AL  F  + +    P +V +   +  + K  +  T   +  ++   G   N  +   +
Sbjct: 74  DDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNIL 133

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R       + +L  M + G   D   + T+I      G +KEA     +MV  G 
Sbjct: 134 INCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGH 193

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q D++SY+T+IN  CK G    A  LL +ME++G + +   +T +ID LCK   +  A  
Sbjct: 194 QPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMD 253

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLC 262
            L  M   G   ++  Y+ I+      G ++ A  +F  M     + ++ T++ +V  LC
Sbjct: 254 LLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLC 313

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           K   +  A  +  +  K G         A++DG   +    EA+K+
Sbjct: 314 KEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKV 359


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 161/310 (51%), Gaps = 14/310 (4%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            NI+L GLC+N     A+ + R + +    P++V+YN LI GLCKA +L+ A  +L E+ 
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            +G  PN++T TT+M    ++ +    +E+L AMK+KG+  D   Y T+I+ F   G L 
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
              +  ++M+  G+  ++V+Y+ L++  C+ G+ + A  +L+ M + G   D  T+T LI
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DGLCK G    A   L  M + G + +   YN ++  L K+G +  A  +   M  K   
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK 240

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLS------CLKSGVRILKSAQKAVVDGLRHSGCR 302
            D  TY++++  LC   ++  A KL  S      CL+  V         ++ GL   G  
Sbjct: 241 ADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF----NMLIGGLCKEGRL 296

Query: 303 REAKKIQSKI 312
            +A KI  K+
Sbjct: 297 TKAVKIHRKM 306



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 155/317 (48%), Gaps = 12/317 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   ++N ++NGLCK +    A+ +   ++  G  P  VT   L+ GLCK GR+  A 
Sbjct: 29  VSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAM 88

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ +   G   + + Y T++     N     G E+   M  KG + +   Y  ++   
Sbjct: 89  ELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGL 148

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++G+ KEA   +  M   G+  D+V+Y  LI+  CK+G+   A  LL+ M ++G E   
Sbjct: 149 CRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSN 208

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ +L+ GLCK G +  A   L  M + G  +++  YN ++  L   GK+D A+ +F S
Sbjct: 209 VTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNS 268

Query: 246 MEVKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           M   ++      FT++ ++  LCK  RL  A K+    +K G     S    V   +   
Sbjct: 269 MFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKG-----SCGNLVTYNMLLG 323

Query: 300 GCRREAKKIQSKIRMAK 316
           GC + A KI+  + + K
Sbjct: 324 GCLK-AGKIKEAMELWK 339



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 133/273 (48%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN+++ GLCK      A+++ R + K G    LVTYN+L+ G  KAG+++ A 
Sbjct: 276 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 335

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K++ D G  PN+ TY+ ++    + R   +   +   M+  G     F Y T++A+ 
Sbjct: 336 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 395

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L++A    ++M     + DI+S+NT+I+   K G  +    L  +M + G   D 
Sbjct: 396 CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDA 455

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T + LI+ L K G +  A+  LE M   GF  +   Y+ ++  L   G     IN+   
Sbjct: 456 LTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQ 515

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    D    S+++  LC + +     +LL
Sbjct: 516 MAAKGTVLDRKIVSTILTCLCHSIQEVDVMELL 548



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 136/269 (50%), Gaps = 8/269 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G C N   D    +F  +   G    +VTY+ L+ GLC+ G+ + A  +L  + 
Sbjct: 106 YGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA 165

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  P+ +TYT ++    ++ +    +++L+ M  KG       Y  +++   K G + 
Sbjct: 166 EHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVI 225

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM--EKQGFECDKYTHTI 190
           +A   +  M+  G + D+V+YNTL+   C +GK++ A  L + M   +   E + +T  +
Sbjct: 226 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNM 285

Query: 191 LIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           LI GLCK G + K  ++H   M K G   NL  YN ++    K GKI  A+ +++ +   
Sbjct: 286 LIGGLCKEGRLTKAVKIH-RKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDL 344

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             V +SFTYS ++   CK + L  A  L 
Sbjct: 345 GFVPNSFTYSILIDGFCKMRMLNIAKGLF 373


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 151/310 (48%), Gaps = 14/310 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+N++++G+C     D AL +F+ ++  G  P   T+NILI   CK G+
Sbjct: 211 MLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGK 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LK + D GH P+ +TY+T++       +      +L  M ++          T
Sbjct: 271 MDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNT 330

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+KEA + ++ MV+ G   D+V+YNTL++ +C+ G+ E A  LL +M  +G
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 390

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T L+ GLCKA  +  A      M   G   NL  Y  ++      G++D  +
Sbjct: 391 LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGL 450

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ------K 290
            +F  M       D   Y ++   LCK+ R    S   L  L+ G   L+S        +
Sbjct: 451 KLFGEMVCAGISPDHVVYGTLAAELCKSGR----SARALEILREGRESLRSEAWGDEVYR 506

Query: 291 AVVDGLRHSG 300
             VDGL  +G
Sbjct: 507 FAVDGLLDAG 516



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 148/307 (48%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP T  +  +++GLC     D+A  +F  + + G  P  VTYN++I   CK G L  A 
Sbjct: 41  VTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEAC 100

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++K++ + GH P+ +TY T+M    ++ + +  L + + M+R G T +   + T+I   
Sbjct: 101 DLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGL 160

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  ++ +A     +M    +  D  SY  LI+   K GKL  AY L   M   G     
Sbjct: 161 CQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSA 220

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ ++I G+C A  +  A    + M   G   +   +N ++D   K GK+D A  + + 
Sbjct: 221 VTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKR 280

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V D  TYS+++  LC   R+  A  LL   +K   +     Q  ++ GL  +G 
Sbjct: 281 MTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR 340

Query: 302 RREAKKI 308
            +EA+++
Sbjct: 341 IKEAREV 347



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 147/314 (46%), Gaps = 39/314 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-------------------------- 40
            P   T+N +++GLCK+   + AL +F  +++ G                          
Sbjct: 112 VPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQ 171

Query: 41  ---------FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
                      P+  +Y ILI GL KAG+L  A  + + + DSG  P+A+TY  ++    
Sbjct: 172 VFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMC 231

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
                   LE+  +M+ KG     F +  +I A  K G++ EA   +++M  DG   D+V
Sbjct: 232 LAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVV 291

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y+TLI+  C   +++ A  LL++M K+  +    T   LI GLCKAG IK AR  L+ M
Sbjct: 292 TYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
              G   ++  YN +V    + G+ + A  +   M  +    +  TY+++V  LCKA RL
Sbjct: 352 VSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 411

Query: 268 PSASKLLLSCLKSG 281
           P A  +      SG
Sbjct: 412 PEACGVFAQMKSSG 425



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 136/282 (48%), Gaps = 4/282 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+ P + ++ I+++GL K    + A ++FR +   G  P  VTYN++I G+C A  L  A
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + K +   G  P+  T+  ++    +  K      +L  M   G+  D   Y T+I+ 
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISG 299

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
              I R+ +A   +E MV    +  +V+ NTLI+  CK G+++ A  +LD M   G   D
Sbjct: 300 LCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  L+ G C+AG  + AR  L  M   G   N+  Y  +V  L K  ++  A  VF 
Sbjct: 360 VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFA 419

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            M+      + FTY++++   C A ++    KL    + +G+
Sbjct: 420 QMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI 461



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 129/252 (51%), Gaps = 4/252 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + +    P+  +Y ILI GL KAG+L  AR + ++L  SG  P+ + YT+++        
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
           +    E+ + M R+G       Y  +I A  K G L+EA D +++M+ DG   D+V+YNT
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +++  CK G++E A LL +EME+ G   ++ +H  +I GLC+   I  A      M    
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
              +  +Y  ++D L K GK++ A  +F  M        + TY+ ++H +C A  L  A 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 272 KLLLSCLKSGVR 283
           +L  S    G R
Sbjct: 241 ELFKSMRSKGCR 252



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 142/311 (45%), Gaps = 6/311 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFNI+++  CK    D A R+ + +   G VP++VTY+ LI GLC   R+  AR +
Sbjct: 253 PSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 312

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      P  +T  T++    +  + K   E+L AM   G + D   Y T++    +
Sbjct: 313 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 372

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ + A + +  MV  G+  ++V+Y  L++  CK  +L  A  +  +M+  G   + +T
Sbjct: 373 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT 432

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---- 243
           +T LI G C AG + G       M   G   +   Y  +   L K G+   A+ +     
Sbjct: 433 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 492

Query: 244 ESM--EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ES+  E      Y   V  L  A ++  A   +   ++ G         ++V GL  SG 
Sbjct: 493 ESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQ 552

Query: 302 RREAKKIQSKI 312
             EA+ +  +I
Sbjct: 553 GGEARAVLEEI 563



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 39/230 (16%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M  +  + D + Y  +I    K G+L +A D  ++++  GV    V+Y +LI+  C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILI--------------------------------- 192
            + A  L  +M ++G      T+ ++I                                 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 193 --DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
             DGLCK+G ++ A L    M ++G   N  ++N I+  L +  KID A  VF  ME + 
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              DS++Y  ++  L KA +L  A KL    L SG+         V+ G+
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGM 230


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 155/310 (50%), Gaps = 6/310 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   TFN +++G+CK    +NA    RGL  K G  P++ TY   I+GLCK GR++ A
Sbjct: 273 VQPTVVTFNTLMSGMCKASDLNNA-NALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDA 331

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + +E+ + G  PN +  TT++    +      GLE+   M  +G   D   Y  ++  
Sbjct: 332 MEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNG 391

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F ++  +K A D +E+M  DG++ D V+Y TLI+  CKEG+L+ A  +  EM  +G   D
Sbjct: 392 FCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 451

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+T LI GL KAG    A   L  M + G   +   Y  ++D   K+G +       +
Sbjct: 452 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLK 511

Query: 245 SMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+ K       TY+ +++  C   ++ +A  LL + L  GV         ++DG    G
Sbjct: 512 EMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHG 571

Query: 301 CRREAKKIQS 310
             R+ ++++S
Sbjct: 572 KVRDTEELKS 581



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 131/265 (49%), Gaps = 4/265 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G  PE   +N+L++ + ++G+L +AR +  E+   G  P  +T+ T+M    +       
Sbjct: 237 GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNA 296

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             +   M + G   D + Y   I    K GR+++A +  E+M   G+  + V   TLI+ 
Sbjct: 297 NALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDA 356

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CKEG + A   L  EM  +G + D   +  L++G C+  ++K A   +E M K G   +
Sbjct: 357 HCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPD 416

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G++D A+ + + M  +    D  TY++++  L KA R   A ++L 
Sbjct: 417 KVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILC 476

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSG 300
             +++G++   +    V+D    +G
Sbjct: 477 EMMEAGLQPDNTTYTMVIDAFCKNG 501



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 132/262 (50%), Gaps = 4/262 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    FN+++  + ++    +A  +F  + + G  P +VT+N L+ G+CKA  L  A 
Sbjct: 238 VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNAN 297

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +  +G AP+  TY   ++   +  + +  +E+   M  +G   +     T+I A 
Sbjct: 298 ALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAH 357

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +    +   +M T GV+ D+V+YN L+N +C+   ++AA  +++EM K G + DK
Sbjct: 358 CKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDK 417

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFE 244
            T+T LIDG CK G +  A    + M+  G   +   Y  ++  L K G+ +D    + E
Sbjct: 418 VTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCE 477

Query: 245 SMEV---KDSFTYSSMVHNLCK 263
            ME     D+ TY+ ++   CK
Sbjct: 478 MMEAGLQPDNTTYTMVIDAFCK 499



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+ ++++  CKN       +  + +Q  G  P +VTYN+++ G C  G+
Sbjct: 478 MMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQ 537

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +L  + + G  PN ITY  ++    ++ K +   E+ SA   KG   D   Y +
Sbjct: 538 MKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKSA---KGMVSDFGVYTS 594

Query: 121 VIAAFVK 127
           +I  FVK
Sbjct: 595 LINEFVK 601



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 8/190 (4%)

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++  + EA  +   ++  GV  +   +N L+    + GKL +A  + DEM ++G +    
Sbjct: 219 RLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVV 278

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   L+ G+CKA ++  A      M K G   ++  Y   +  L K G+I  A+ +FE M
Sbjct: 279 TFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM 338

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             +    ++   ++++   CK   + +  +L       GV+    A  A+V+G     CR
Sbjct: 339 CERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGF----CR 394

Query: 303 REAKKIQSKI 312
               K  + I
Sbjct: 395 VRDMKAANDI 404


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 150/273 (54%), Gaps = 4/273 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +++NG CK    + ALR    + + GF P+ VT+N L+ G C+ G +  A  I+  + + 
Sbjct: 233 VLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEK 292

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P+  TY +++    +  +++  +EIL  M  +  + +   Y T+I+A  K   ++ A
Sbjct: 293 GFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAA 352

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
           TD    +V+ G+  D+ ++NTLI   C     + A  + +EM+ +G + D++T++ILID 
Sbjct: 353 TDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDS 412

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KD 250
           LC    +K A + L+ M   G   N   YN ++D L K  +I+ A  +F+ ME+    + 
Sbjct: 413 LCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRS 472

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           S TY++++  LCK KR+  AS+L+   +  G++
Sbjct: 473 SVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLK 505



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 154/330 (46%), Gaps = 39/330 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   TFN ++NG C+    ++AL +   + + GF P++ TYN LI G+CK G    A 
Sbjct: 259 FSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAI 318

Query: 66  WILKELGDSGHAPNAITYTTIMK---------------------------CCFR------ 92
            IL+++     +PN +TY T++                            C F       
Sbjct: 319 EILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGL 378

Query: 93  --NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
             ++   + +E+   MK KG   D F Y  +I +     RLKEA   +++M + G   + 
Sbjct: 379 CLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNA 438

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V YNTLI+  CK  ++E A  + D+ME  G      T+  LIDGLCK   ++ A   ++ 
Sbjct: 439 VVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQ 498

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M   G   +   YN ++    + G I+ A ++ ++M       D FTY +++  LC+A R
Sbjct: 499 MIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGR 558

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +  ASKLL S    G+ +   A   V+  L
Sbjct: 559 VDVASKLLRSVQMKGIVLTPHAYNPVIQAL 588



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 137/266 (51%), Gaps = 4/266 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++   L P   TFN ++ GLC ++  D A+ MF  ++  G  P+  TY+ILI  LC   R
Sbjct: 359 LVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERR 418

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +LKE+  SG A NA+ Y T++    ++R+ +   EI   M+  G +     Y T
Sbjct: 419 LKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNT 478

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R++EA+  M+QM+ +G++ D  +YN+L+  +C+ G +E A  ++  M   G
Sbjct: 479 LIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNG 538

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D +T+  LI GLC+AG +  A   L  +   G      AYN ++  L    +    +
Sbjct: 539 CEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGM 598

Query: 241 NVFESM----EVKDSFTYSSMVHNLC 262
            +F  M    +  D+ T+  +   LC
Sbjct: 599 RLFREMMEKSDPPDALTHKIVFRGLC 624



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 165/354 (46%), Gaps = 47/354 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQK----HGFVPELVTYNILIKGLCKAGRLRT 63
           P T  +NI LN L +    DN L++   L       G V ++ T+N+LIK LCKA +LR 
Sbjct: 121 PDTNFYNIALNALVE----DNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRP 176

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+E+ + G  P+ IT+TT+M+           L++   M   G          ++ 
Sbjct: 177 AILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVN 236

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F K GR++EA  ++ ++  +G   D V++N+L+N +C+ G +  A  ++D M ++GF+ 
Sbjct: 237 GFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDP 296

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI------- 236
           D YT+  LI G+CK G  + A   L+ M       N   YN ++  L K+ +I       
Sbjct: 297 DVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLA 356

Query: 237 ----------------------------DHAINVFESMEVK----DSFTYSSMVHNLCKA 264
                                       D A+ +FE M+ K    D FTYS ++ +LC  
Sbjct: 357 RILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYE 416

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           +RL  A  LL     SG          ++DGL  S    +A++I  ++ +  +S
Sbjct: 417 RRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVS 470



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 151/304 (49%), Gaps = 4/304 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  + +P T T+N +++ LCK    + A  + R L   G +P++ T+N LI+GLC +  
Sbjct: 324 MILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKN 383

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + +E+ + G  P+  TY+ ++      R+ K  L +L  M+  G   +   Y T
Sbjct: 384 QDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNT 443

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R+++A +  +QM   GV    V+YNTLI+  CK  ++E A  L+D+M  +G
Sbjct: 444 LIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEG 503

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + DK+T+  L+   C+ G+I+ A   ++ M   G + ++  Y  ++  L + G++D A 
Sbjct: 504 LKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVAS 563

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +  S+++K        Y+ ++  L   KR     +L    ++          K V  GL
Sbjct: 564 KLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGL 623

Query: 297 RHSG 300
            + G
Sbjct: 624 CNGG 627



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 119/263 (45%), Gaps = 41/263 (15%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           L+  L ++    +   +LK+L  SG  PNA T+ T+++      + +  L+IL      G
Sbjct: 61  LLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILE--NELG 118

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           +  D   Y   + A V+  +LK       +MV +G+ LD+ ++N LI   CK  +L  A 
Sbjct: 119 FKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAI 178

Query: 171 LLLDEMEKQGFECDKYTHT-----------------------------------ILIDGL 195
           L+L+EM   G + D+ T T                                   +L++G 
Sbjct: 179 LMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGF 238

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G ++ A   +  +++ GF  +   +N +V+   + G ++ A+++ + M  K    D 
Sbjct: 239 CKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDV 298

Query: 252 FTYSSMVHNLCKAKRLPSASKLL 274
           +TY+S++  +CK      A ++L
Sbjct: 299 YTYNSLISGMCKLGEFEKAIEIL 321


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 154/298 (51%), Gaps = 4/298 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           + NI++N LC+  + D ++ +   + K G  P+ +T+N LI GLC  G+++ A  +  E+
Sbjct: 130 SLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEM 189

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              GH PN I+YTT++    +     + +++   M++ G   +   Y T+I +  K   +
Sbjct: 190 VKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLV 249

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +++ +MV  G+  ++ +YN++++ +C  G+L  A  L  EM  +    +  T TIL
Sbjct: 250 NDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTIL 309

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +DGLCK G +  ARL  E M + G + ++  YN ++D       ++ A  VFE M  K  
Sbjct: 310 VDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGC 369

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              + +Y+ +++  CK++R+  A  LL       +         ++ GL   G  +EA
Sbjct: 370 APGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEA 427



 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 153/314 (48%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++NGLC       A+ +F  + K G  P +++Y  +I GLCK G    A  +
Sbjct: 161 PDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDV 220

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++  +G  PN +TY+TI+    ++R     +E LS M  +G   + F Y +++  F  
Sbjct: 221 FKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCN 280

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L EAT   ++MV   V  + V++  L++  CKEG +  A L+ + M ++G E D  T
Sbjct: 281 LGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDIST 340

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A+   E M + G      +YN +++   K  ++D A ++   M 
Sbjct: 341 YNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMY 400

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D+ TYS+++  LC+  R   A  L       G          ++DG    G   
Sbjct: 401 HKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLD 460

Query: 304 EAKKIQSKIRMAKI 317
           EA K+   ++  K+
Sbjct: 461 EALKLLKSMKEKKL 474



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 143/278 (51%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P T TF I+++GLCK      A  +F  + + G  P++ TYN L+ G C    
Sbjct: 294 MVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRL 353

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ + + +   G AP A +Y  ++    ++R+      +L+ M  K    D   Y T
Sbjct: 354 MNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYST 413

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    ++GR KEA +  ++M + G   ++V+Y  L++ +CK G L+ A  LL  M+++ 
Sbjct: 414 LMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKK 473

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +   +TILI+G+  AG ++ A+     +   G   ++  Y  ++  L K+G  D A 
Sbjct: 474 LEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAY 533

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++F  ME    + +S +Y+ M+    + +   +A +L+
Sbjct: 534 DLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLI 571



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 4/267 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++G C     + A R+F+ +     +P  VT+ IL+ GLCK G 
Sbjct: 259 MVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGM 318

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR + + + + G  P+  TY  +M      R      ++   M RKG       Y  
Sbjct: 319 VSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNI 378

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K  R+ EA   + +M    +  D V+Y+TL+   C+ G+ + A  L  EM   G
Sbjct: 379 LINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYG 438

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+ IL+DG CK G++  A   L+ M +   + N+  Y  +++ +   GK++ A 
Sbjct: 439 PHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAK 498

Query: 241 NVFESM----EVKDSFTYSSMVHNLCK 263
            +F  +       D  TY+ M+  L K
Sbjct: 499 ELFSKLFGDGTRPDIRTYTVMIKGLLK 525



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 114/238 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   ++NI++NG CK+R  D A  +   +      P+ VTY+ L++GLC+ GR
Sbjct: 364 MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGR 423

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  + KE+   G  PN +TY  ++    ++      L++L +MK K    +   Y  
Sbjct: 424 PKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTI 483

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G+L+ A +   ++  DG + DI +Y  +I    KEG  + AY L  +ME  G
Sbjct: 484 LIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDG 543

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           F  +  ++ ++I G  +  +   A   ++ M    F  NL  +  ++D   +D  I  
Sbjct: 544 FLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDEIISQ 601



 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           +MV    +  +V +   +  + K+ +      L ++M+      + Y+  ILI+ LC+  
Sbjct: 83  RMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLN 142

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYS 255
           ++  +   L  M K+G   +   +N +++ L  +GKI  A+ +F  M       +  +Y+
Sbjct: 143 HVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYT 202

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++++ LCK      A  +     ++G +        ++D L
Sbjct: 203 TVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSL 243


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 159/315 (50%), Gaps = 7/315 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NIML  LC     D A+ +F  L+  G  P+ +TY+ L+ G  K  RL  A 
Sbjct: 155 IAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNAL 214

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-KGYTFDGFGYCTVIAA 124
           ++L E+      P+A+ Y  ++  CFRN +++  + +   + R  G + +   Y  ++  
Sbjct: 215 YLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDG 274

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K+G  KEA D  E+MV +  Q D+++Y T+I+  C+   +++A  +  EM K G   D
Sbjct: 275 LCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPD 334

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              +  L+ G C AG +  A    + M+  G   N+ +YN ++  L   G +D A +++E
Sbjct: 335 VVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGI-RNVTSYNIMLKGLFDGGMVDKATDLWE 393

Query: 245 SMEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            +E  DS      T+S+M+H LC+      + ++L     SG  + + +  +++ GL   
Sbjct: 394 LLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKD 453

Query: 300 GCRREAKKIQSKIRM 314
           G   +A K+  KI M
Sbjct: 454 GRLDDAVKLYEKISM 468



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 152/332 (45%), Gaps = 40/332 (12%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRT 63
           ++ P    +N +L G  +N   + A+R++  L +  G  P L TYN+++ GLCK G  + 
Sbjct: 224 EVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKE 283

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + + +  + H P+ ITY T++    R+        + S M + G   D   Y +++ 
Sbjct: 284 AGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLK 343

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQ-----------------------------------L 148
            F   GR+ EA  + + M   G++                                    
Sbjct: 344 GFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSP 403

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+V+++T+I+  C++G    +  +L+E    G E D+++++ +I GLCK G +  A    
Sbjct: 404 DMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLY 463

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKA 264
           E ++   F  N   YN +++   +  K   AI V+  M   D    + TY++++H LCKA
Sbjct: 464 EKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKA 523

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++   AS+     L+ G  +  +   +++ GL
Sbjct: 524 EKYLEASRFTREMLEKGCMLDVNTYGSLIRGL 555



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 139/282 (49%), Gaps = 5/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   TF+ M++GLC+  + + +L++    +  G   +  +Y+ +I GLCK GRL  A 
Sbjct: 401 LSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAV 460

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++      PN+  Y  ++    +  K+   + + S M     +     Y T+I   
Sbjct: 461 KLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGL 520

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +  EA+ +  +M+  G  LD+ +Y +LI   C++ K++ A  L +++  +G + D 
Sbjct: 521 CKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDV 580

Query: 186 YTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----I 240
             H ILI GLC AG + + ++L  E   K     N+  YN ++D   + G  D A    +
Sbjct: 581 VMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWM 640

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + E+  V D  +Y++ +  LC   R P   +LL   L SG+
Sbjct: 641 AILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGI 682



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 161/358 (44%), Gaps = 52/358 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+  M++GLC++   D+A R++  + K G VP++V YN L+KG C AGR
Sbjct: 291 MVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGR 350

Query: 61  LRTAR--W----------------ILKELGDSGH-----------------APNAITYTT 85
           +  A   W                +LK L D G                  +P+ +T++T
Sbjct: 351 VGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFST 410

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++            L+IL   +  G   D F Y ++I+   K GRL +A    E++  D 
Sbjct: 411 MIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDS 470

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN-IKGA 204
            + +   YN LIN +C+  K   A  +  +M +        T+  LI GLCKA   ++ +
Sbjct: 471 FKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEAS 530

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
           R   E + K G   ++  Y  ++  L +D KID A+ ++  +  K    D   ++ ++H 
Sbjct: 531 RFTREMLEK-GCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHG 589

Query: 261 LCKAKRLPSASKLLL------SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           LC A ++  AS+LL       +C  + V         ++DG   +GC  +A  +   I
Sbjct: 590 LCSAGKVDEASQLLSEMKEKNNCCPNVV-----TYNTLMDGFYETGCFDKAASLWMAI 642



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 1/230 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P +  +N ++NG C+     +A+R++  + ++   P  +TYN LI GLCKA +   A   
Sbjct: 473 PNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRF 532

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ + G   +  TY ++++   R++K    L + + +  KG   D   +  +I     
Sbjct: 533 TREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCS 592

Query: 128 IGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            G++ EA+  + +M   +    ++V+YNTL++ + + G  + A  L   + + G   D  
Sbjct: 593 AGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDII 652

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           ++   I GLC           L  M   G       +N +V  + K G I
Sbjct: 653 SYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIKYGPI 702



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 1/203 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   D +P T T+N +++GLCK      A R  R + + G + ++ TY  LI+GLC+  +
Sbjct: 501 MAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKK 560

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYC 119
           +  A  +  ++ D G   + + +  ++       K     ++LS MK K         Y 
Sbjct: 561 IDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYN 620

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  F + G   +A      ++ +G+  DI+SYNT I   C   +      LL+EM   
Sbjct: 621 TLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLAS 680

Query: 180 GFECDKYTHTILIDGLCKAGNIK 202
           G      T  IL+  + K G I+
Sbjct: 681 GIIPTAITWNILVRAVIKYGPIQ 703


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 148/285 (51%), Gaps = 4/285 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P T T+N ++  LCK  + + A  + R L   G +P++ T+N LI+GLC    
Sbjct: 363 MVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSN 422

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + +E+ + G  P+  TY+ +++     R+ K  L +L  M+  G   +   Y T
Sbjct: 423 REIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNT 482

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R+ +A D  +QM   GV    V+YNTLIN  CK  ++E A  L+D+M  +G
Sbjct: 483 LIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEG 542

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + DK+T+T ++   C+ G+IK A   ++ M   G + ++  Y  ++  L K G++D A 
Sbjct: 543 LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVAS 602

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +  S+++K        Y+ ++  LCK KR   A +L    ++ G
Sbjct: 603 KLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKG 647



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 168/358 (46%), Gaps = 78/358 (21%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY------------ 48
           M+   + P  +TFNI++  LCK      A+ M   +  +G  P+  T+            
Sbjct: 190 MVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEAD 249

Query: 49  -----------------------NILIKGLCKAGRLRTA-RWILKELGDSGHAPNAITYT 84
                                  N+L+ GLCK GR+  A R+I +E    G  P+ +T+ 
Sbjct: 250 VEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEE---EGFCPDQVTFN 306

Query: 85  TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
            ++    R    K GLE++  M  KG+  D + Y ++I+   K+G + EA + +  MV+ 
Sbjct: 307 ALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSR 366

Query: 145 GVQLDIVSYNTLINLYCKEGKLEA-----------------------------------A 169
             + + V+YNTLI   CKE  +EA                                   A
Sbjct: 367 DCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIA 426

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM+++G + D++T++ILI+ LC    +K A + L+ M   G   N+  YN ++D 
Sbjct: 427 MELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDG 486

Query: 230 LGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           L K+ ++  A ++F+ ME+    + S TY+++++ LCK+KR+  A++L+   +  G++
Sbjct: 487 LCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLK 544



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 152/341 (44%), Gaps = 47/341 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++NGLC+  +    L M   + + GF  ++ TYN LI GLCK G +  A  I
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEI 359

Query: 68  LKELGDSGHAPNAITYTTIMK-------------------------------------CC 90
           L  +      PN +TY T++                                      C 
Sbjct: 360 LHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCL 419

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
             NR  ++ +E+   MK KG   D F Y  +I +     RLKEA   +++M   G   ++
Sbjct: 420 TSNR--EIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNV 477

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V YNTLI+  CK  ++  A  + D+ME  G      T+  LI+GLCK+  ++ A   ++ 
Sbjct: 478 VVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQ 537

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M   G   +   Y  ++    + G I  A ++ ++M +     D  TY +++  LCKA R
Sbjct: 538 MIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGR 597

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           +  ASKLL S    G+ +   A   V+  L    C+R+  K
Sbjct: 598 VDVASKLLRSVQMKGMVLTPQAYNPVIQAL----CKRKRTK 634



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 138/283 (48%), Gaps = 49/283 (17%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQK----HGFVPELVTYNILIKGLCKAGRLRT 63
           P T  +N+ L+ L K     N L++   L          P++ T+NILI+ LCKA +LR 
Sbjct: 162 PDTRFYNVALSLLVKA----NKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRP 217

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+++ + G  P+  T+TT+M+                                   
Sbjct: 218 AILMLEDMPNYGLRPDEKTFTTLMQ----------------------------------- 242

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F++   ++ A    E MV  G +L  VS N L+N  CKEG++E A   +   E++GF  
Sbjct: 243 GFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFI--YEEEGFCP 300

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D+ T   L++GLC+ G+IK     +++M + GF+ ++  YN ++  L K G+ID A+ + 
Sbjct: 301 DQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEIL 360

Query: 244 ESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             M  +D    + TY++++  LCK   + +A++L       GV
Sbjct: 361 HHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGV 403



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 139/306 (45%), Gaps = 5/306 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFR-GLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   + + +L+ L +   + +AL +F+    +  +      ++ L++ L +AG   +   
Sbjct: 54  PPDFSPSQLLDLLRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLT 113

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCTVIAA 124
           +L+++  S    +  T+   ++    +      +  L  +  + +    D   Y   ++ 
Sbjct: 114 LLRQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSL 173

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            VK  +LK       +MV D V  D+ ++N LI   CK  +L  A L+L++M   G   D
Sbjct: 174 LVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPD 233

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           + T T L+ G  +  +++GA    E M + G +    + N +V+ L K+G+I+ A+    
Sbjct: 234 EKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIY 293

Query: 245 SME--VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             E    D  T++++V+ LC+   +    +++   L+ G  +      +++ GL   G  
Sbjct: 294 EEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEI 353

Query: 303 REAKKI 308
            EA +I
Sbjct: 354 DEAVEI 359


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           NI+L GLC+N     A+ + R + +    P++V+YN LI GLCKA +L+ A  +L E+  
Sbjct: 148 NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 207

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           +G  PN++T TT+M    ++ +    +E+L AMK+KG+  D   Y T+I+ F   G L  
Sbjct: 208 AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 267

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
             +  ++M+  G+  ++V+Y+ L++  C+ G+ + A  +L+ M + G   D  T+T LID
Sbjct: 268 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 327

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           GLCK G    A   L  M + G + +   YN ++  L K+G +  A  +   M  K    
Sbjct: 328 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA 387

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLS------CLKSGVRILKSAQKAVVDGLRHSGCRR 303
           D  TY++++  LC   ++  A KL  S      CL+  V         ++ GL   G   
Sbjct: 388 DVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF----NMLIGGLCKEGRLT 443

Query: 304 EAKKIQSKI 312
           +A KI  K+
Sbjct: 444 KAVKIHRKM 452



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 155/317 (48%), Gaps = 12/317 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   ++N ++NGLCK +    A+ +   ++  G  P  VT   L+ GLCK GR+  A 
Sbjct: 175 VSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAM 234

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ +   G   + + Y T++     N     G E+   M  KG + +   Y  ++   
Sbjct: 235 ELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGL 294

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++G+ KEA   +  M   G+  D+V+Y  LI+  CK+G+   A  LL+ M ++G E   
Sbjct: 295 CRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSN 354

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ +L+ GLCK G +  A   L  M + G  +++  YN ++  L   GK+D A+ +F S
Sbjct: 355 VTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNS 414

Query: 246 MEVKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           M   ++      FT++ ++  LCK  RL  A K+    +K G     S    V   +   
Sbjct: 415 MFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKG-----SCGNLVTYNMLLG 469

Query: 300 GCRREAKKIQSKIRMAK 316
           GC + A KI+  + + K
Sbjct: 470 GCLK-AGKIKEAMELWK 485



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 137/275 (49%), Gaps = 4/275 (1%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           K GF   +   NI++KGLC+ G +  A  +++E+G    +P+ ++Y T++    + +K K
Sbjct: 137 KRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLK 196

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             + +L  M+  G   +     T++    K GR+ EA + +E M   G   D+V Y TLI
Sbjct: 197 EAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLI 256

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           + +C  G L+    L DEM  +G   +  T++ L+ GLC+ G  K A   L  M + G  
Sbjct: 257 SGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIH 316

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
            ++  Y  ++D L KDG+  HA+++   M    E   + TY+ ++  LCK   +  A K+
Sbjct: 317 PDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKI 376

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           L   ++ G +        ++ GL   G   EA K+
Sbjct: 377 LRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL 411



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 122/246 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN+++ GLCK      A+++ R + K G    LVTYN+L+ G  KAG+++ A 
Sbjct: 422 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 481

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K++ D G  PN+ TY+ ++    + R   +   +   M+  G     F Y T++A+ 
Sbjct: 482 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 541

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L++A    ++M     + DI+S+NT+I+   K G  +    L  +M + G   D 
Sbjct: 542 CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDA 601

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T + LI+ L K G +  A+  LE M   GF  +   Y+ ++  L   G     IN+   
Sbjct: 602 LTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQ 661

Query: 246 MEVKDS 251
           M  K +
Sbjct: 662 MAAKGT 667



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 8/303 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G C N   D    +F  +   G    +VTY+ L+ GLC+ G+ + A  +L  + 
Sbjct: 252 YGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA 311

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  P+ +TYT ++    ++ +    +++L+ M  KG       Y  +++   K G + 
Sbjct: 312 EHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVI 371

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM--EKQGFECDKYTHTI 190
           +A   +  M+  G + D+V+YNTL+   C +GK++ A  L + M   +   E + +T  +
Sbjct: 372 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNM 431

Query: 191 LIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           LI GLCK G + K  ++H   M K G   NL  YN ++    K GKI  A+ +++ +   
Sbjct: 432 LIGGLCKEGRLTKAVKIH-RKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDL 490

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             V +SFTYS ++   CK + L  A  L       G+         ++  L   G   +A
Sbjct: 491 GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQA 550

Query: 306 KKI 308
           K +
Sbjct: 551 KSL 553



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 6/290 (2%)

Query: 17  LNGLCK--NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           L  LC+  N     A+ +F        +P   T N L+  L ++     A  + + +   
Sbjct: 44  LRSLCQKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHV 103

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
              P+  + + +++C    +K +LG  ++  + ++G+T + F    V+    + G + EA
Sbjct: 104 DVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEA 163

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              + +M    V  DIVSYNTLIN  CK  KL+ A  LL EME  G   +  T T L+DG
Sbjct: 164 MGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDG 223

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
           LCK G +  A   LE M K GFD+++  Y  ++     +G +D    +F+ M  K    +
Sbjct: 224 LCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISAN 283

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             TYS +VH LC+  +   A+ +L +  + G+         ++DGL   G
Sbjct: 284 VVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDG 333



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 142/309 (45%), Gaps = 6/309 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P  AT N +++ L ++R    A  ++R +     +P   + + LI+    A + +  
Sbjct: 69  NLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLG 128

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             ++  +   G   N      ++K   RN      + ++  M RK  + D   Y T+I  
Sbjct: 129 FGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLING 188

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K  +LKEA   + +M   G   + V+  TL++  CK+G+++ A  LL+ M+K+GF+ D
Sbjct: 189 LCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDAD 248

Query: 185 KYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              +  LI G C  GN+ +G  L  E + K G  +N+  Y+C+V  L + G+   A  V 
Sbjct: 249 VVLYGTLISGFCNNGNLDRGKELFDEMLGK-GISANVVTYSCLVHGLCRLGQWKEANTVL 307

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            +M       D  TY+ ++  LCK  R   A  LL   ++ G          ++ GL   
Sbjct: 308 NAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKE 367

Query: 300 GCRREAKKI 308
           G   +A KI
Sbjct: 368 GLVIDAFKI 376


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLC       AL +F      GF P++VTY  L+ GLCK G    A  +
Sbjct: 180 PDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRL 239

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN I Y TI+    ++R+      + S M  KG + D F Y ++I A   
Sbjct: 240 LRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCN 299

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  + +MV   +  ++V ++T+++  CKEG +  A+ ++D M K+G E D  T
Sbjct: 300 LCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVT 359

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+DG C    +  A    + M   G   N+ +YN +++   +  ++D A+ + E M 
Sbjct: 360 YTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMS 419

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++    D+ TY++++H LC   RL  A  L    + SG
Sbjct: 420 LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 457



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 129/276 (46%), Gaps = 6/276 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++ LCK+R    A  +F  +   G  P++ TYN LI  LC     +    +
Sbjct: 250 PNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTL 309

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+ +S   PN + ++T++    +     +  +++  M ++G   D   Y  ++     
Sbjct: 310 LNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCL 369

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + EA    + MV  G   ++ SYN LIN YC+  +++ A  LL++M  QG   D  T
Sbjct: 370 RSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVT 429

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI GLC  G ++ A      M   G   +L  Y  ++D L K+  +  A+ + +++E
Sbjct: 430 YNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIE 489

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL--LSC 277
                 D   Y+  +  +C+A  L +A  L   LSC
Sbjct: 490 GSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSC 525



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  F  +L  + K ++    L +   +   G  P++ T NILI   C   RL  A  +
Sbjct: 110 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 169

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +L   G  P+  T+ T+++      K    L +      +G+  D   Y T++    K
Sbjct: 170 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 229

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G    A   +  MV    + ++++YNT+I+  CK+ ++  A+ L  EM  +G   D +T
Sbjct: 230 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFT 289

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI  LC     K     L  M       N+  ++ +VD L K+G I  A +V + M 
Sbjct: 290 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI 349

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +    D  TY++++   C    +  A K+  + +  G
Sbjct: 350 KRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 387



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 35/205 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  +++G C     D A+++F  +   G VP + +YNILI G C+  R
Sbjct: 348 MIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQR 407

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+++   G   + +TY T++                             G C 
Sbjct: 408 MDKAMGLLEQMSLQGLIADTVTYNTLIH----------------------------GLC- 438

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                  +GRL+ A     +MV  G   D+V+Y  L++  CK   L  A +LL  +E   
Sbjct: 439 ------HVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 492

Query: 181 FECDKYTHTILIDGLCKAGNIKGAR 205
            + D   + I IDG+C+AG ++ AR
Sbjct: 493 LDADILVYNIAIDGMCRAGELEAAR 517



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+ I+L+ LCKN +   A+ + + ++      +++ YNI I G+C+AG 
Sbjct: 453 MVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGE 512

Query: 61  LRTARWILKELGDSGHA 77
           L  AR +   L   G A
Sbjct: 513 LEAARDLFSNLSCQGFA 529


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 154/316 (48%), Gaps = 48/316 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    FN +++GL K+   D A+++F  ++     P++ TYN +I GLCK+G L  AR
Sbjct: 93  VAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKAR 152

Query: 66  WILKELGDSG--HAPNAITYTTIMKCCF-RNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +L+E+   G   AP+ +TY T++     ++   +  LEIL  MK  G   D   Y ++I
Sbjct: 153 ELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSII 212

Query: 123 AA--------------------------------FVKIGRLKEATDYMEQMVTDGVQLDI 150
            A                                F K G L  A + +E+M  + +  D+
Sbjct: 213 HALCVAGRVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDV 272

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-------- 202
           ++Y  L+N  C+ G+++ A+ LL+E+ +QG+  D   +T L+DGLCK+G I+        
Sbjct: 273 ITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKE 332

Query: 203 -GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
             AR  L  M  I     L  YN ++  L KDG I  A+++   +     V D  TY+++
Sbjct: 333 MSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTL 392

Query: 258 VHNLCKAKRLPSASKL 273
           +  LCKA R+  A  L
Sbjct: 393 IDGLCKANRVREACDL 408



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 158/313 (50%), Gaps = 10/313 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N +L+ L K+ +     ++++ L   G  P LVT+ ILI+G CKAG+   A   L+ L
Sbjct: 29  SYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRAL 88

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +   AP+   +  ++   F++      +++   M+      D F Y TVI+   K G L
Sbjct: 89  DEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNL 148

Query: 132 KEATDYMEQMVTDG--VQLDIVSYNTLINL-YCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           ++A + +E+M+  G     DIV+YNTLIN   CK+G +E A  +LD M+  G   D  T+
Sbjct: 149 EKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITY 208

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-- 246
             +I  LC AG +  A    E +  +    +L  +N ++D   K G +  A+ V E M  
Sbjct: 209 NSIIHALCVAGRVVEAA---EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCR 265

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
              + D  TY+ +V+ LC+  ++  A  LL   ++ G      A  ++VDGL  SG   E
Sbjct: 266 ENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEE 325

Query: 305 AKKIQSKIRMAKI 317
           A K+  ++   +I
Sbjct: 326 AHKLVKEMSAREI 338



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 159/351 (45%), Gaps = 52/351 (14%)

Query: 4   GDLTPCTATFNIMLN-GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           G   P   T+N ++N G+CK+   + AL +  G++  G  P+++TYN +I  LC AGR+ 
Sbjct: 163 GKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVV 222

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  ILK +  S   P+ +T+ T++    +       LE+L  M R+    D   Y  ++
Sbjct: 223 EAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILV 279

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--- 179
               ++G+++ A   +E++V  G   D+++Y +L++  CK G++E A+ L+ EM  +   
Sbjct: 280 NGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREIL 339

Query: 180 -----------------------------------------GFECDKYTHTILIDGLCKA 198
                                                    G+  D  T+  LIDGLCKA
Sbjct: 340 AEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKA 399

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTY 254
             ++ A    + M  +G   N      +V  L + G++D A ++   M  K    +   Y
Sbjct: 400 NRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVY 459

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           +S++  LCK+ R+  A  +L +    GV +   A + ++  + H G   EA
Sbjct: 460 TSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEA 510



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 126/251 (50%), Gaps = 9/251 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR-- 62
           ++ P   T+ I++NGLC+      A  +   + + G++P+++ Y  L+ GLCK+G +   
Sbjct: 267 NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEA 326

Query: 63  -------TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
                  +AR IL E+      P   TY  ++    ++      + ++S +  +GY  D 
Sbjct: 327 HKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDV 386

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y T+I    K  R++EA D  ++M + G   + V+  +++   C+ G+++ A+ L+ E
Sbjct: 387 VTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE 446

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M ++    +   +T LIDGLCK+  +  A + L+ M   G   +  AY  ++  +   G+
Sbjct: 447 MSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGR 506

Query: 236 IDHAINVFESM 246
           +  A+ +++ M
Sbjct: 507 VAEAMAMYDEM 517



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 135/259 (52%), Gaps = 7/259 (2%)

Query: 22  KNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPN 79
           ++   D A++ F    ++ G+  ++ +YN L+  L K+G + RT + + K+L  SG +PN
Sbjct: 3   RSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGK-VYKDLLHSGCSPN 61

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            +T+  +++   +  +    LE L A+       D + +  +I    K G   +A    E
Sbjct: 62  LVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFE 121

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILID-GLC 196
            M +  V  DI +YNT+I+  CK G LE A  LL+EM ++G +   D  T+  LI+ G+C
Sbjct: 122 NMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGIC 181

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-VKDSFTYS 255
           K G+++ A   L+ M   G   ++  YN I+  L   G++  A  + ++M    D  T++
Sbjct: 182 KDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLVTFN 241

Query: 256 SMVHNLCKAKRLPSASKLL 274
           +++   CKA  LP A ++L
Sbjct: 242 TLLDGFCKAGMLPRALEVL 260



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 94/191 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   T+NI+L GL K+     A+ +   L   G+VP++VTYN LI GLCKA R
Sbjct: 342 MVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANR 401

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A  +  E+   G  PN +T  +++    R  +      ++  M RK +  +   Y +
Sbjct: 402 VREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTS 461

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R+ +A   ++ M   GV LD  +Y  LI      G++  A  + DEM  +G
Sbjct: 462 LIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARG 521

Query: 181 FECDKYTHTIL 191
           F  D  T   L
Sbjct: 522 FLPDGSTSKTL 532


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 145/275 (52%), Gaps = 4/275 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M++G CK + TD A    R +   G  P L+T+N++I GLC+ GRL+    +
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G+ P+ +TY T++    +   +   L + + M R G + +   Y ++I +  K
Sbjct: 76  LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L  A ++ +QM   G+  +  +Y T+IN + ++G L+ AY +L+EM + GF     T
Sbjct: 136 AGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVT 195

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +  LI+G C  G ++ A   L+ M   G   ++ +Y+ I+    ++ ++D A  +   M 
Sbjct: 196 YNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMI 255

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
               + D+ TYSS++  LC+ +RL  A  +    L
Sbjct: 256 GKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEML 290



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 25/290 (8%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  ++NG  +    D A R+   + + GF+P +VTYN LI G C  GR+  A 
Sbjct: 154 LCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAI 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+++   G  P+ ++Y+TI+    RN++     ++   M  K    D   Y ++I   
Sbjct: 214 GLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGL 273

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  RL EA D  ++M+T  +  D  +Y TLIN YCKEG L  A  L DEM ++GF  D 
Sbjct: 274 CEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDA 333

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA---YNCIVDR------------- 229
            T+ +LI+GL K    K AR     + K+ +D ++ +   YN +++              
Sbjct: 334 VTYNVLINGLNKQARSKEAR---RLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALV 390

Query: 230 --LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
                 G +D A  VFESM  K    +   Y+ ++H  C+   +  A KL
Sbjct: 391 KGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKL 440



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 138/272 (50%), Gaps = 4/272 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
            LR F+ ++++G +P +VTYN +I G CK  R   A   L+ +G  G  PN IT+  I+ 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R+ + K   E+L  M RKGY  D   Y T++  + K G   +A     +MV +G+  
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++V+Y +LIN  CK G L  A    D+M  +G   ++ T+T +I+G  + G +  A   L
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVL 181

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M + GF  ++  YN +++     G+++ AI + + M  K    D  +YS+++    + 
Sbjct: 182 NEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARN 241

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + L  A ++ +  +   V        +++ GL
Sbjct: 242 QELDRAFQMKVEMIGKSVLPDAVTYSSLIQGL 273



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 151/312 (48%), Gaps = 6/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN+++NGLC++        +   + + G+VP+ VTYN L+ G CK G    A 
Sbjct: 49  LEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQAL 108

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  +G +PN +TYT+++    +       +E    M  +G   +   Y T+I  F
Sbjct: 109 VLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGF 168

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L EA   + +M   G    IV+YN LIN +C  G++E A  LL +M  +G   D 
Sbjct: 169 AQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDV 228

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +++ +I G  +   +  A ++ +E + K      +  Y+ ++  L +  ++  A ++F+
Sbjct: 229 VSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAV-TYSSLIQGLCEQRRLTEACDMFQ 287

Query: 245 SMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       D FTY+++++  CK   L  A  L    ++ G          +++GL    
Sbjct: 288 EMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQA 347

Query: 301 CRREAKKIQSKI 312
             +EA+++  K+
Sbjct: 348 RSKEARRLLLKL 359



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 105/202 (51%), Gaps = 4/202 (1%)

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           +GL     M+R G   +   Y T+I  + K+ R  EA  ++  M   G++ +++++N +I
Sbjct: 1   MGLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMII 60

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           N  C++G+L+    +L EM ++G+  D+ T+  L++G CK GN   A +    M + G  
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
            N+  Y  +++ + K G ++ A+  F+ M V+    +  TY+++++   +   L  A ++
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 274 LLSCLKSGVRILKSAQKAVVDG 295
           L    +SG         A+++G
Sbjct: 181 LNEMTRSGFIPSIVTYNALING 202



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 134/301 (44%), Gaps = 19/301 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   +++ +++G  +N+  D A +M   +     +P+ VTY+ LI+GLC+  R
Sbjct: 219 MVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRR 278

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + +E+      P+  TYTT++    +       L +   M +KG+  D   Y  
Sbjct: 279 LTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNV 338

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI----NL-----------YCKEGK 165
           +I    K  R KEA   + ++  D      V+YNTLI    N+           +C +G 
Sbjct: 339 LINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGL 398

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           ++ A  + + M  +  + ++  + ++I G C+ GN+  A    + M  + F  +      
Sbjct: 399 MDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLA 458

Query: 226 IVDRL---GKDGKIDHAI-NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +V  L   G DG+++  I ++  S ++ D+     +V    K   +     LL    K G
Sbjct: 459 LVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEINQKEGNMDMVFNLLTEMAKDG 518

Query: 282 V 282
           +
Sbjct: 519 L 519


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLC       AL +F      GF P++VTY  L+ GLCK G    A  +
Sbjct: 218 PDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRL 277

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN I Y TI+    ++R+      + S M  KG + D F Y ++I A   
Sbjct: 278 LRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCN 337

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  + +MV   +  ++V ++T+++  CKEG +  A+ ++D M K+G E D  T
Sbjct: 338 LCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVT 397

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+DG C    +  A    + M   G   N+ +YN +++   +  ++D A+ + E M 
Sbjct: 398 YTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMS 457

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++    D+ TY++++H LC   RL  A  L    + SG
Sbjct: 458 LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 495



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 144/316 (45%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P    +N +++ LCK+R    A  +F  +   G  P++ TYN LI  LC    
Sbjct: 281 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCE 340

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +    +L E+ +S   PN + ++T++    +     +  +++  M ++G   D   Y  
Sbjct: 341 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 400

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++        + EA    + MV  G   ++ SYN LIN YC+  +++ A  LL++M  QG
Sbjct: 401 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 460

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI GLC  G ++ A      M   G   +L  Y  ++D L K+  +  A+
Sbjct: 461 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 520

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + +++E      D   Y+  +  +C+A  L +A  L  +    G++        ++ GL
Sbjct: 521 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 580

Query: 297 RHSGCRREAKKIQSKI 312
              G   EA K+  K+
Sbjct: 581 CKRGLLDEANKLFRKM 596



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 141/313 (45%), Gaps = 4/313 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+ +++ LCK      A  +   + K G  P++VTY  L+ G C    
Sbjct: 351 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G  PN  +Y  ++    + ++    + +L  M  +G   D   Y T
Sbjct: 411 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I     +GRL+ A     +MV  G   D+V+Y  L++  CK   L  A +LL  +E   
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 530

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   + I IDG+C+AG ++ AR     ++  G   ++  YN ++  L K G +D A 
Sbjct: 531 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEAN 590

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+     +D   Y++++    ++     A++LL   L  G     S    +V+ L
Sbjct: 591 KLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEML 650

Query: 297 RHSGCRREAKKIQ 309
              G  +  ++++
Sbjct: 651 SDDGLDQSFERLR 663



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  F  +L  + K ++    L +   +   G  P++ T NILI   C   RL  A  +
Sbjct: 148 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 207

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +L   G  P+  T+ T+++      K    L +      +G+  D   Y T++    K
Sbjct: 208 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 267

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G    A   +  MV    + ++++YNT+I+  CK+ ++  A+ L  EM  +G   D +T
Sbjct: 268 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFT 327

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI  LC     K     L  M       N+  ++ +VD L K+G I  A +V + M 
Sbjct: 328 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI 387

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +    D  TY++++   C    +  A K+  + +  G
Sbjct: 388 KRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 425


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 151/316 (47%), Gaps = 22/316 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P  +T+  ++  LC+ +  D A  +F+ ++K G  P++ TY ILI   CKAG +  A+
Sbjct: 448 FVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQ 507

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+  +G +PN +TYT ++    ++++     +I   M       +   Y  +I   
Sbjct: 508 SWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGL 567

Query: 126 VKIGRLKEATD----------------YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
            K G +++A +                Y E   TD +  ++V+Y  L+N  CK  K+  A
Sbjct: 568 CKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDA 627

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           + LLD M   G E ++  +  L+DG CK G I  A+     M K G+  ++  Y  ++DR
Sbjct: 628 HDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDR 687

Query: 230 LGKDGKIDHAINVFESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
           + KDG++D A+ V   M +KDS      TY++MV  LCK      A  LL    K G   
Sbjct: 688 MFKDGRLDLAMKVLSQM-LKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSP 746

Query: 285 LKSAQKAVVDGLRHSG 300
                 A++DGL  +G
Sbjct: 747 NVVTYTALIDGLGKAG 762



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 149/315 (47%), Gaps = 9/315 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+  ++NGLCK +   +A  +   +   G  P  + Y+ L+ G CK G + +A+
Sbjct: 604 ISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQ 663

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G+ P+  TYT+++   F++ +  L +++LS M +     +   Y  ++   
Sbjct: 664 EVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGL 723

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  ++A + +  M   G   ++V+Y  LI+   K GK++A   L  +M+ +G   + 
Sbjct: 724 CKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNY 783

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ ILI+  C AG +  A L L+ M +  +   L+ Y   V    K  +   ++ + E 
Sbjct: 784 VTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSK--RFLASLGLLEE 841

Query: 246 MEVKDSF----TYSSMVHNLCKAKRLPSASKL---LLSCLKSGVRILKSAQKAVVDGLRH 298
           ME  D+      Y  ++ +  KA RL +A +L   ++    S     K    +++  L  
Sbjct: 842 MESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCL 901

Query: 299 SGCRREAKKIQSKIR 313
           S    EA  + S++R
Sbjct: 902 SSQVEEAVALYSEMR 916



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 144/340 (42%), Gaps = 32/340 (9%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR------- 60
           P  + FN +++  C       A ++F  +   G  P  V YNI I  +C  GR       
Sbjct: 339 PSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSIC--GREELPNPE 396

Query: 61  -LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            L  A  + +E+  +    N I      +C     K++   +I+  M RKG+  D   Y 
Sbjct: 397 LLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYT 456

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            VI    +  R+ +A    ++M   GV  D+ +Y  LI+ +CK G +E A    DEM   
Sbjct: 457 KVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSA 516

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   +  T+T L+    K+  +  A      M       N   Y+ ++D L K G+I  A
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKA 576

Query: 240 INVFESM-------------EVKDS-------FTYSSMVHNLCKAKRLPSASKLLLSCLK 279
             V+  +             E KD+        TY ++V+ LCKA+++  A  LL + L 
Sbjct: 577 CEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLA 636

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
           +G    +    A+VDG    G    A+++   +RM K  +
Sbjct: 637 AGCEPNQIVYDALVDGFCKVGEIDSAQEV--FLRMTKCGY 674



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 5/238 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  M++GLCK   T+ AL +   ++K G  P +VTY  LI GL KAG++     +
Sbjct: 711 PNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLEL 770

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G APN +TY  ++  C           +L  MK+  +     GY T +  F K
Sbjct: 771 FMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSK 830

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--- 184
             R   +   +E+M +         Y  LI+ + K G+LE A  L  EM +     +   
Sbjct: 831 --RFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMAS 888

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           K  HT LI  LC +  ++ A      M + G   +L A+ C+V  L +  K + A+ +
Sbjct: 889 KDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQL 946



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 139/303 (45%), Gaps = 9/303 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    ++ +++G CK    D+A  +F  + K G++P + TY  LI  + K GR
Sbjct: 634 MLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGR 693

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L ++      PN +TYT ++    +  + +  L +LS M++KG + +   Y  
Sbjct: 694 LDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTA 753

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++    +   QM T G   + V+Y  LIN  C  G L+ A+LLLDEM++  
Sbjct: 754 LIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTH 813

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +      +   + G  K      +   LE M           Y  ++D   K G+++ A+
Sbjct: 814 WPKYLQGYRTTVQGFSK--RFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETAL 871

Query: 241 NVF-ESMEVKDSFT------YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            +  E MEV  S        ++S++  LC + ++  A  L     + G+    SA   +V
Sbjct: 872 ELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLV 931

Query: 294 DGL 296
            GL
Sbjct: 932 KGL 934



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 137/351 (39%), Gaps = 48/351 (13%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C       AL     L+  G+ P  VTYN L++ L  AG++  A  + KE+ 
Sbjct: 172 LNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMS 231

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILS---------------------------- 104
            SG   +  T  +  +   +  ++   L++L                             
Sbjct: 232 ASGFCMDRSTVGSFAQALCKEGRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAM 291

Query: 105 ----AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
                M+   Y  +   Y T++  F+K  +L      +  M+T+G       +N+L++ Y
Sbjct: 292 SFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTY 351

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           C       AY L + M   G       + I I  +C    +    L L+   K+ ++  L
Sbjct: 352 CNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPEL-LDLAEKV-YEEML 409

Query: 221 EAYNCIVDRLGKD---------GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            A +C+++++            GK + A  + + M     V D+ TY+ ++  LC+AKR+
Sbjct: 410 VA-SCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRV 468

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
             A  L     K GV         ++D    +G   +A+    ++R A  S
Sbjct: 469 DKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCS 519



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 10/269 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           T ++++  L   R  +  +R F   ++  G+      Y+ L + L      RTA  +L+E
Sbjct: 100 TDSVVVAVLGAVRSPELCVRFFLWAERQVGYKHTGACYDALAEVLGFEDPARTAERLLRE 159

Query: 71  LG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +G D       +    + +CC +   +   LE L  +K  GY      Y  ++      G
Sbjct: 160 IGEDDRDVLGRLLNVLVRRCCLQGL-WGEALEELGRLKDFGYRPSAVTYNALVQVLASAG 218

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +++ A    ++M   G  +D  +  +     CKEG+   A   LD +E++ F+ D    T
Sbjct: 219 QVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDA---LDLLEREDFKLDTVLCT 275

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD---GKIDHAINVFESM 246
            +I GL +A     A   L  M    +  N+  Y  ++    K    G     IN+  + 
Sbjct: 276 QMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTE 335

Query: 247 EVKDSFT-YSSMVHNLCKAKRLPSASKLL 274
               S + ++S+VH  C A+    A KL 
Sbjct: 336 GCNPSPSLFNSLVHTYCNAEDYAYAYKLF 364



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT---YTT 85
           +L +   ++ H   P    Y +LI    KAGRL TA  + KE+ +   + N  +   +T+
Sbjct: 835 SLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTS 894

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +++    + + +  + + S M+R+G   D   +  ++   ++  +  EA      +  +G
Sbjct: 895 LIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEG 954

Query: 146 VQLD 149
           V  +
Sbjct: 955 VNWE 958


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 143/272 (52%), Gaps = 4/272 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++N ++NGL  +++ ++A R+F  ++     P++VTYN +IKG C+ G+ R A 
Sbjct: 210 IEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAF 269

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK +     AP+ ITY T+++ C+    +   L +   M  KG       Y  VI   
Sbjct: 270 EKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGL 329

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+  E     E M++ G + ++  Y  LI+   K G +  A LL   M+K+G E D+
Sbjct: 330 CKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDE 389

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ ++++ LCK+G +  A  ++E+ +  G   N   Y+ ++D LGK G++D A  +F  
Sbjct: 390 VTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYE 449

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
           M  K    DS+ Y++++  L K  ++  A  L
Sbjct: 450 MVKKGCPPDSYCYNALIDALAKCGKIDEALAL 481



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 142/297 (47%), Gaps = 4/297 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +++ L  N   D+   +F   ++ G +  + + N LIK     G +    W+ + + ++G
Sbjct: 150 LIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENG 209

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+  +Y  ++     ++  +    +   M+      D   Y T+I  + ++G+ ++A 
Sbjct: 210 IEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAF 269

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + ++ M    V  D ++Y TLI     EG  ++   L  EM+++G E   + ++++I GL
Sbjct: 270 EKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGL 329

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G         E M   G  +N+  Y  ++D   K G +  A+ +F+ M+ +    D 
Sbjct: 330 CKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDE 389

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            TY  +V++LCK+ RL  A + +  C   GV +      +++DGL  SG   EA++I
Sbjct: 390 VTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERI 446



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 131/305 (42%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +++++ GLCK+        +F  +   G    +  Y  LI    K G +  A  + K +
Sbjct: 321 VYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRM 380

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ +TY  I+    ++ +    LE +     KG   +   Y ++I    K GR+
Sbjct: 381 KKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRV 440

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA     +MV  G   D   YN LI+   K GK++ A  L   ME  G +   YT+TIL
Sbjct: 441 DEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTIL 500

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---V 248
           I GL +    + A    + M   G      A+  +   L   GK+  A  + + M    V
Sbjct: 501 ITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGV 560

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
                +  M++ LCKA R+  A KL    +  G  I    +  +++ LR +G    A K+
Sbjct: 561 IPETAFDDMINILCKAGRIKEACKLADGIVDRGREIPGRVRTVLINALRKAGNADLALKL 620

Query: 309 -QSKI 312
            +SKI
Sbjct: 621 MRSKI 625



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 42/250 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNAL----------------------------------- 30
           L P   T+ +++N LCK+   D AL                                   
Sbjct: 385 LEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAE 444

Query: 31  RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
           R+F  + K G  P+   YN LI  L K G++  A  + K +   G      TYT ++   
Sbjct: 445 RIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGL 504

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           FR  + +  L +   M  KG T     +  +       G++  A   +++M   GV +  
Sbjct: 505 FREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGV-IPE 563

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +++ +IN+ CK G+++ A  L D +  +G E      T+LI+ L KAGN   A L L+ 
Sbjct: 564 TAFDDMINILCKAGRIKEACKLADGIVDRGREIPGRVRTVLINALRKAGN---ADLALKL 620

Query: 211 MNK---IGFD 217
           M     IG+D
Sbjct: 621 MRSKIGIGYD 630



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 4/205 (1%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           A K+K YT +   Y ++I      G L        +    G+ + + S N+LI  +   G
Sbjct: 134 AGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLG 193

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
            +E    +   M++ G E   +++  L++GL  +  I+ A    E M       ++  YN
Sbjct: 194 MVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYN 253

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++    + GK   A    ++ME++    D  TY +++          S   L     + 
Sbjct: 254 TMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEK 313

Query: 281 GVRILKSAQKAVVDGLRHSGCRREA 305
           G+ I       V+ GL   G R E 
Sbjct: 314 GLEIPPHVYSLVIGGLCKDGKRVEG 338



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 1/111 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP  A F  +  GLC +     A ++   +   G +PE   ++ +I  LCKAGR
Sbjct: 520 MIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVIPE-TAFDDMINILCKAGR 578

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
           ++ A  +   + D G        T ++    +     L L+++ +    GY
Sbjct: 579 IKEACKLADGIVDRGREIPGRVRTVLINALRKAGNADLALKLMRSKIGIGY 629


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 142/278 (51%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF +++NG CKN  T  A+R+F  +++ G    +VTYN LI GLC  G+
Sbjct: 255 MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGK 314

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +++E+ D G +PN IT+  ++K   +        + +  M  +    D   Y  
Sbjct: 315 VEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTI 374

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + ++G++++A    E M   G+  ++ +YN LI  + + G   +A  LLDEM+++G
Sbjct: 375 LIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG 434

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D  T+ +LI  LC  G ++ A   L+ M+++G + N   YN I+      G I  A 
Sbjct: 435 IEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAY 494

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +   ME      +  TY+  +   C+  ++  A+ LL
Sbjct: 495 EIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLL 532



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 152/314 (48%), Gaps = 7/314 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK---AGRLR 62
           ++P   TFN +++GLC+      A  + + ++  G  P + TYN LI G CK   AG + 
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
               +LKE+ ++G +P A+T+  ++    +N      + +   MK++G       Y ++I
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +     G+++E    ME+M   G+  + +++  ++  +CK+G +  A   +D M ++  E
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D   +TILIDG  + G ++ A    E M K G   N+  YNC++    + G    A  +
Sbjct: 367 PDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            + M+ K    D  TY+ ++  LC    +  A KLL    + G+         ++ G   
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCD 486

Query: 299 SGCRREAKKIQSKI 312
            G  + A +I++++
Sbjct: 487 KGNIKSAYEIRTRM 500



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 7/250 (2%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P+  +   ++      ++  L  +   +  R+  + D + + TVI+   +IG+L++A 
Sbjct: 152 HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY---LLLDEMEKQGFECDKYTHTILI 192
           D  + +   G+   + +YN+LI+ YCK+G     Y   +LL EM + G      T  +LI
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
           +G CK  N   A    E M + G  +++  YN ++  L  +GK++  + + E ME     
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +  T+  ++   CK   +  A+  +    +  V         ++DG R  G   +A  +
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAV 391

Query: 309 QSKIRMAKIS 318
           +  +    IS
Sbjct: 392 KEAMAKKGIS 401



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 98/197 (49%), Gaps = 4/197 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P    + I+++G  +    ++A+ +   + K G  P + TYN LI G  ++G  R+A
Sbjct: 364 NVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSA 423

Query: 65  RWILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
             +L E+ + G   + +TY  ++   CC    + +  +++L  M   G   +   Y T+I
Sbjct: 424 SGLLDEMKEKGIEADVVTYNVLIGALCC--KGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F   G +K A +   +M     + ++V+YN  I  +C+ GK++ A  LL+EM  +   
Sbjct: 482 QGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541

Query: 183 CDKYTHTILIDGLCKAG 199
            +  T+  + +G+ + G
Sbjct: 542 PNGITYETIKEGMMEKG 558


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 145/286 (50%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   TFN ++  LC+N   +    +   + +HG  P++  Y  +I G+CK G 
Sbjct: 242 MVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH 301

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  IL  +   G  PN + Y T++K      ++K   E+LS M +K    D   +  
Sbjct: 302 LEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNI 361

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G +    + +EQM++ G   D+++Y T+IN +CKEG ++ A +LL  M   G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  ++TI++ GLC AG    A   +  M + G   N   +N +++ L K G ++ AI
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + M V     D  +YS+++  L KA +   A +LL   +  G+
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGI 527



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 145/306 (47%), Gaps = 39/306 (12%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            TFNI+++  C+N   D  + +   +  HG +P+++TY  +I G CK G +  A  +LK 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  PN ++YT ++K                            G C+        GR
Sbjct: 417 MSSCGCKPNTVSYTIVLK----------------------------GLCSA-------GR 441

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             +A + M QM+  G   + V++NTLIN  CK+G +E A  LL +M   G   D  +++ 
Sbjct: 442 WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYST 501

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +IDGL KAG  + A   L  M   G   N   Y+ I   L ++G+++  I +F++++   
Sbjct: 502 VIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT 561

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D+  Y++++ +LCK      A       + +G    +S    ++ GL   G  +EA+
Sbjct: 562 IRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQ 621

Query: 307 KIQSKI 312
           ++ S++
Sbjct: 622 ELLSEL 627



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N++LN +C+    D A+ + R L   G   ++V+YN ++KGLC A R      ++ 
Sbjct: 181 TGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMD 240

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+     APN +T+ T++    RN  ++   E+L+ M   G T D   Y T+I    K G
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L+ A + + +M + G++ ++V YNT++   C   + + A  LL EM ++    D  T  
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           IL+D  C+ G +      LE M   G   ++  Y  +++   K+G ID A+ + +SM   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               ++ +Y+ ++  LC A R   A +L+   ++ G
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 103/227 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NG CK    D A+ + + +   G  P  V+Y I++KGLC AGR   A  +
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  PN +T+ T++    +    +  +E+L  M   G + D   Y TVI    K
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +EA + +  MV  G+  + + Y+++     +EG++     + D ++      D   
Sbjct: 509 AGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVL 568

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +  +I  LCK      A     YM   G   N   Y  ++  L  +G
Sbjct: 569 YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEG 615



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 142/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++++L   C++    N++R+   +   G   +    N+++  +C+ G +  A  +
Sbjct: 144 PIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGL 203

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L++L   G   + ++Y  ++K     +++    E++  M R     +   + T+I    +
Sbjct: 204 LRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR 263

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G  +   + + QM   G   DI  Y T+I+  CKEG LE A  +L+ M   G + +   
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVC 323

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++ GLC A   K A   L  M +     +   +N +VD   ++G +D  I + E M 
Sbjct: 324 YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 383

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D  TY+++++  CK   +  A  LL S    G +    +   V+ GL  +G   
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 304 EAKKIQSKI 312
           +A+++ S++
Sbjct: 444 DAEELMSQM 452



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 2/199 (1%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P T ++ I+L GLC   R+ D A  +   + + G  P  VT+N LI  LCK G +  A  
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVD-AEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK++  +G +P+ I+Y+T++    +  K +  LE+L+ M  KG + +   Y ++  A  
Sbjct: 483 LLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALS 542

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR+ +     + +    ++ D V YN +I+  CK  + + A      M   G   ++ 
Sbjct: 543 REGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602

Query: 187 THTILIDGLCKAGNIKGAR 205
           T+T+LI GL   G  K A+
Sbjct: 603 TYTMLIKGLASEGLAKEAQ 621



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TFN ++N LCK    + A+ + + +  +G  P+L++Y+ +I GL KAG+
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L  + + G +PN I Y++I     R  +    +++   +K      D   Y  
Sbjct: 512 TEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI++  K      A D+   MV++G   +  +Y  LI     EG  + A  LL E+  +G
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 145/286 (50%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   TFN ++  LC+N   +    +   + +HG  P++  Y  +I G+CK G 
Sbjct: 242 MVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH 301

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  IL  +   G  PN + Y T++K      ++K   E+LS M +K    D   +  
Sbjct: 302 LEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNI 361

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G +    + +EQM++ G   D+++Y T+IN +CKEG ++ A +LL  M   G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  ++TI++ GLC AG    A   +  M + G   N   +N +++ L K G ++ AI
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + M V     D  +YS+++  L KA +   A +LL   +  G+
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGI 527



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 39/305 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNI+++  C+N   D  + +   +  HG +P+++TY  +I G CK G +  A  +LK +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN ++YT ++K                            G C+        GR 
Sbjct: 418 SSCGCKPNTVSYTIVLK----------------------------GLCSA-------GRW 442

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A + M QM+  G   + V++NTLIN  CK+G +E A  LL +M   G   D  +++ +
Sbjct: 443 VDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTV 502

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGL KAG  + A   L  M   G   N   Y+ I   L ++G+++  I +F++++    
Sbjct: 503 IDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI 562

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+  Y++++ +LCK      A       + +G    +S    ++ GL   G  +EA++
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 308 IQSKI 312
           + S++
Sbjct: 623 LLSEL 627



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N++LN +C+    D A+ + R L   G   ++V+YN ++KGLC A R      ++ 
Sbjct: 181 TGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMD 240

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+     APN +T+ T++    RN  ++   E+L+ M   G T D   Y T+I    K G
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L+ A + + +M + G++ ++V YNT++   C   + + A  LL EM ++    D  T  
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           IL+D  C+ G +      LE M   G   ++  Y  +++   K+G ID A+ + +SM   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               ++ +Y+ ++  LC A R   A +L+   ++ G
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 103/227 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NG CK    D A+ + + +   G  P  V+Y I++KGLC AGR   A  +
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  PN +T+ T++    +    +  +E+L  M   G + D   Y TVI    K
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +EA + +  MV  G+  + + Y+++     +EG++     + D ++      D   
Sbjct: 509 AGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVL 568

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +  +I  LCK      A     YM   G   N   Y  ++  L  +G
Sbjct: 569 YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEG 615



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 142/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++++L   C++    N++R+   +   G   +    N+++  +C+ G +  A  +
Sbjct: 144 PIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGL 203

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L++L   G   + ++Y  ++K     +++    E++  M R     +   + T+I    +
Sbjct: 204 LRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR 263

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G  +   + + QM   G   DI  Y T+I+  CKEG LE A  +L+ M   G + +   
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVC 323

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++ GLC A   K A   L  M +     +   +N +VD   ++G +D  I + E M 
Sbjct: 324 YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 383

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D  TY+++++  CK   +  A  LL S    G +    +   V+ GL  +G   
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 304 EAKKIQSKI 312
           +A+++ S++
Sbjct: 444 DAEELMSQM 452



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 2/199 (1%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P T ++ I+L GLC   R+ D    M + +Q+ G  P  VT+N LI  LCK G +  A  
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK++  +G +P+ I+Y+T++    +  K +  LE+L+ M  KG + +   Y ++  A  
Sbjct: 483 LLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALS 542

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR+ +     + +    ++ D V YN +I+  CK  + + A      M   G   ++ 
Sbjct: 543 REGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602

Query: 187 THTILIDGLCKAGNIKGAR 205
           T+T+LI GL   G  K A+
Sbjct: 603 TYTMLIKGLASEGLAKEAQ 621



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TFN ++N LCK    + A+ + + +  +G  P+L++Y+ +I GL KAG+
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L  + + G +PN I Y++I     R  +    +++   +K      D   Y  
Sbjct: 512 TEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI++  K      A D+   MV++G   +  +Y  LI     EG  + A  LL E+  +G
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 145/286 (50%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   TFN ++  LC+N   +    +   + +HG  P++  Y  +I G+CK G 
Sbjct: 242 MVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH 301

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  IL  +   G  PN + Y T++K      ++K   E+LS M +K    D   +  
Sbjct: 302 LEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNI 361

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G +    + +EQM++ G   D+++Y T+IN +CKEG ++ A +LL  M   G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  ++TI++ GLC AG    A   +  M + G   N   +N +++ L K G ++ AI
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + M V     D  +YS+++  L KA +   A +LL   +  G+
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGI 527



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 39/305 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNI+++  C+N   D  + +   +  HG +P+++TY  +I G CK G +  A  +LK +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN ++YT ++K                            G C+        GR 
Sbjct: 418 SSCGCKPNTVSYTIVLK----------------------------GLCSA-------GRW 442

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A + M QM+  G   + V++NTLIN  CK+G +E A  LL +M   G   D  +++ +
Sbjct: 443 VDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTV 502

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGL KAG  + A   L  M   G   N   Y+ I   L ++G+++  I +F++++    
Sbjct: 503 IDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI 562

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+  Y++++ +LCK      A       + +G    +S    ++ GL   G  +EA++
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 308 IQSKI 312
           + S++
Sbjct: 623 LLSEL 627



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N++LN +C+    D A+ + R L   G   ++V+YN ++KGLC A R      ++ 
Sbjct: 181 TGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMD 240

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+     APN +T+ T++    RN  ++   E+L+ M   G T D   Y T+I    K G
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L+ A + + +M + G++ ++V YNT++   C   + + A  LL EM ++    D  T  
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           IL+D  C+ G +      LE M   G   ++  Y  +++   K+G ID A+ + +SM   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               ++ +Y+ ++  LC A R   A +L+   ++ G
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 103/227 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NG CK    D A+ + + +   G  P  V+Y I++KGLC AGR   A  +
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  PN +T+ T++    +    +  +E+L  M   G + D   Y TVI    K
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +EA + +  MV  G+  + + Y+++     +EG++     + D ++      D   
Sbjct: 509 AGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVL 568

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +  +I  LCK      A     YM   G   N   Y  ++  L  +G
Sbjct: 569 YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEG 615



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 142/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++++L   C++    N++R+   +   G   +    N+++  +C+ G +  A  +
Sbjct: 144 PIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGL 203

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L++L   G   + ++Y  ++K     +++    E++  M R     +   + T+I    +
Sbjct: 204 LRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR 263

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G  +   + + QM   G   DI  Y T+I+  CKEG LE A  +L+ M   G + +   
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVC 323

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++ GLC A   K A   L  M +     +   +N +VD   ++G +D  I + E M 
Sbjct: 324 YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 383

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D  TY+++++  CK   +  A  LL S    G +    +   V+ GL  +G   
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 304 EAKKIQSKI 312
           +A+++ S++
Sbjct: 444 DAEELMSQM 452



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 2/199 (1%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P T ++ I+L GLC   R+ D    M + +Q+ G  P  VT+N LI  LCK G +  A  
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK++  +G +P+ I+Y+T++    +  K +  LE+L+ M  KG + +   Y ++  A  
Sbjct: 483 LLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALS 542

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR+ +     + +    ++ D V YN +I+  CK  + + A      M   G   ++ 
Sbjct: 543 REGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602

Query: 187 THTILIDGLCKAGNIKGAR 205
           T+T+LI GL   G  K A+
Sbjct: 603 TYTMLIKGLASEGLAKEAQ 621



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TFN ++N LCK    + A+ + + +  +G  P+L++Y+ +I GL KAG+
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L  + + G +PN I Y++I     R  +    +++   +K      D   Y  
Sbjct: 512 TEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI++  K      A D+   MV++G   +  +Y  LI     EG  + A  LL E+  +G
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 145/286 (50%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   TFN ++  LC+N   +    +   + +HG  P++  Y  +I G+CK G 
Sbjct: 242 MVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH 301

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  IL  +   G  PN + Y T++K      ++K   E+LS M +K    D   +  
Sbjct: 302 LEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNI 361

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G +    + +EQM++ G   D+++Y T+IN +CKEG ++ A +LL  M   G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  ++TI++ GLC AG    A   +  M + G   N   +N +++ L K G ++ AI
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + M V     D  +YS+++  L KA +   A +LL   +  G+
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGI 527



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 145/306 (47%), Gaps = 39/306 (12%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            TFNI+++  C+N   D  + +   +  HG +P+++TY  +I G CK G +  A  +LK 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  PN ++YT ++K                            G C+        GR
Sbjct: 417 MSSCGCKPNTVSYTIVLK----------------------------GLCSA-------GR 441

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             +A + M QM+  G   + V++NTLIN  CK+G +E A  LL +M   G   D  +++ 
Sbjct: 442 WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYST 501

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +IDGL KAG  + A   L  M   G   N   Y+ I   L ++G+++  I +F++++   
Sbjct: 502 VIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT 561

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D+  Y++++ +LCK      A       + +G    +S    ++ GL   G  +EA+
Sbjct: 562 IRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQ 621

Query: 307 KIQSKI 312
           ++ S++
Sbjct: 622 ELLSEL 627



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N++LN +C+    D A+ + R L   G   ++V+YN ++KGLC A R      ++ 
Sbjct: 181 TGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMD 240

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+     APN +T+ T++    RN  ++   E+L+ M   G T D   Y T+I    K G
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L+ A + + +M + G++ ++V YNT++   C   + + A  LL EM ++    D  T  
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           IL+D  C+ G +      LE M   G   ++  Y  +++   K+G ID A+ + +SM   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               ++ +Y+ ++  LC A R   A +L+   ++ G
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 104/232 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NG CK    D A+ + + +   G  P  V+Y I++KGLC AGR   A  +
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  PN +T+ T++    +    +  +E+L  M   G + D   Y TVI    K
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +EA + +  MV  G+  + + Y+++     +EG++     + D ++      D   
Sbjct: 509 AGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVL 568

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           +  +I  LCK      A     YM   G   N   Y  ++  L  +G    A
Sbjct: 569 YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 142/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++++L   C++    N++R+   +   G   +    N+++  +C+ G +  A  +
Sbjct: 144 PIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGL 203

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L++L   G   + ++Y  ++K     +++    E++  M R     +   + T+I    +
Sbjct: 204 LRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR 263

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G  +   + + QM   G   DI  Y T+I+  CKEG LE A  +L+ M   G + +   
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVC 323

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++ GLC A   K A   L  M +     +   +N +VD   ++G +D  I + E M 
Sbjct: 324 YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 383

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D  TY+++++  CK   +  A  LL S    G +    +   V+ GL  +G   
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 304 EAKKIQSKI 312
           +A+++ S++
Sbjct: 444 DAEELMSQM 452



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 2/199 (1%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P T ++ I+L GLC   R+ D    M + +Q+ G  P  VT+N LI  LCK G +  A  
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK++  +G +P+ I+Y+T++    +  K +  LE+L+ M  KG + +   Y ++  A  
Sbjct: 483 LLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALS 542

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR+ +     + +    ++ D V YN +I+  CK  + + A      M   G   ++ 
Sbjct: 543 REGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602

Query: 187 THTILIDGLCKAGNIKGAR 205
           T+T+LI GL   G  K A+
Sbjct: 603 TYTMLIKGLASEGLAKEAQ 621



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TFN ++N LCK    + A+ + + +  +G  P+L++Y+ +I GL KAG+
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L  + + G +PN I Y++I     R  +    +++   +K      D   Y  
Sbjct: 512 TEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI++  K      A D+   MV++G   +  +Y  LI     EG  + A  LL E+  +G
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+N++++   K    D AL +F  +++ GF P +VTYNIL+  LC AGR
Sbjct: 161 MLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR 220

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +  ++   G +P++ TY+T++    ++ + +   ++   M  +G   D   Y +
Sbjct: 221 VGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNS 280

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++A   K G +      M++M   G   D  S+NT+++   K  K +AA  +   M + G
Sbjct: 281 LLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESG 340

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  ++ ILID   + G+   AR  LE M + GF    + YN ++  L  DG++D A 
Sbjct: 341 CKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAF 400

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V E ME      D  TY+ ++  L K      A++L       GV     +    +DGL
Sbjct: 401 AVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGL 460



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 145/308 (47%), Gaps = 4/308 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +N+++    ++   D+A+ MFR ++  G  P+  TY  L+  L KAGR++ AR     +
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM 161

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PN  TY  +M    +  +  + L + + MKR+G+      Y  ++ A    GR+
Sbjct: 162 LERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRV 221

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A     +M  DG   D  +Y+TL+N   K G++E A+ +  EM  +G   D   +  L
Sbjct: 222 GAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSL 281

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           +  L KAGN+      ++ M++ GF  +  ++N I+D LGK  K D A  VF  M     
Sbjct: 282 LATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGC 341

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  +Y+ ++ +  +      A ++L   +++G         +++  L   G   EA  
Sbjct: 342 KPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFA 401

Query: 308 IQSKIRMA 315
           +  ++  A
Sbjct: 402 VLEEMETA 409



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 2/243 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P + T++ ++NGL K+   + A ++FR +   G   +LV YN L+  L KAG +     
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++KE+   G  P+A ++ TIM    +  K     E+ + M   G   D   Y  +I ++ 
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYA 356

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G   +A   +E+MV  G   +  +YN+LI+    +G+++ A+ +L+EME  G   D  
Sbjct: 357 RFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVV 416

Query: 187 THTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           T+  L+D L K G N + ARL  + M   G + +  +Y   +D L  D ++D A+ +F+ 
Sbjct: 417 TYNRLMDMLGKRGENQRAARL-FQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKD 475

Query: 246 MEV 248
           M+ 
Sbjct: 476 MKA 478



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 138/289 (47%), Gaps = 4/289 (1%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A  +F   +     P +  +  LI  L  +G    A  + K+L   G   +   Y  ++
Sbjct: 48  DAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLI 107

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           +   R+ +    +E+   MK KG   D + Y  ++ A  K GR++EA  + + M+  G+ 
Sbjct: 108 RYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLT 167

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            +I +YN L++ + K G+L+ A  L  EM+++GF+    T+ IL+D LC AG +  AR  
Sbjct: 168 PNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKL 227

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
              M   G   +   Y+ +V+ LGK G+++ A  VF  M  +    D   Y+S++  L K
Sbjct: 228 FHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAK 287

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           A  +    KL+    + G      +   ++D L  +     A+++ +++
Sbjct: 288 AGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARM 336



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 148/306 (48%), Gaps = 4/306 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    F  +++ L  +   + A  +++ L + G   +   YN+LI+   ++G+L +A  
Sbjct: 62  SPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAME 121

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +E+   G  P+  TY  ++    +  + +       AM  +G T +   Y  ++ AF 
Sbjct: 122 MFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFR 181

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G+L  A     +M   G Q  +V+YN L++  C  G++ AA  L  +M   G   D Y
Sbjct: 182 KVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSY 241

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ L++GL K+G ++ A      M   G   +L  YN ++  L K G +D    + + M
Sbjct: 242 TYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM 301

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             K    D+F++++++  L KA +  +A ++    ++SG +    +   ++D     G  
Sbjct: 302 SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDA 361

Query: 303 REAKKI 308
            +A+++
Sbjct: 362 AQARQM 367



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +FN +++ L K    D A  +F  + + G  P+L++YNILI    + G    AR +
Sbjct: 308 PDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQM 367

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+ ++G  P   TY +++     + +      +L  M+  G   D   Y  ++    K
Sbjct: 368 LEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGK 427

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G  + A    +QM   GV+ D +SY   I+    + +L+ A +L  +M+  G   DK  
Sbjct: 428 RGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAM 487

Query: 188 HTILIDGLCKAGNIK 202
           + ILI    +AG+ +
Sbjct: 488 YRILIRAAHRAGDTE 502



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 8/186 (4%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G L      +++MV +G  L   +   LI  Y +  K   A+ L ++ E   
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAES-- 58

Query: 181 FECDKYTH--TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           F C    H  T LID L  +G  + A L  + + + G   +  AYN ++   G+ G++D 
Sbjct: 59  FACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDS 118

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A+ +F  M++K    D +TY  +V+ L KA R+  A     + L+ G+         ++D
Sbjct: 119 AMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMD 178

Query: 295 GLRHSG 300
             R  G
Sbjct: 179 AFRKVG 184



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 97/246 (39%), Gaps = 39/246 (15%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +L  M  +G          +I A+ +  +  +A D   Q  +      + ++  LI++  
Sbjct: 17  LLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILV 76

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
             G+ E A L+  ++ ++G + D++ + +LI    ++G +  A      M   G + +  
Sbjct: 77  NSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEY 136

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK-------------DSF---------------- 252
            Y  +V+ LGK G++  A + F++M  +             D+F                
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM 196

Query: 253 ----------TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                     TY+ ++  LC A R+ +A KL       G          +V+GL  SG  
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRV 256

Query: 303 REAKKI 308
            EA K+
Sbjct: 257 EEAHKV 262


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 146/286 (51%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI++  LC   +   AL + R ++  G  P  VTYN L+   C+AG 
Sbjct: 148 MLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGE 207

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++  + + G  PN +T+ +++    +  + +   ++   M ++G   DG  Y T
Sbjct: 208 VDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNT 267

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K+G   EA     +M   G+  D+V++ +LI++ CK G LE A  L+ EM ++G
Sbjct: 268 LVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERG 327

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + ++ T T LIDG CK G +  A L +  M +     ++  YN +++     G++D A 
Sbjct: 328 LQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEAR 387

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME K    D  TYS+++   CK     SA +L    L++GV
Sbjct: 388 ELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGV 433



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 156/313 (49%), Gaps = 4/313 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L P   TFN ++NG+CK    ++A ++F  + K G  P+ V+YN L+ G CK G    
Sbjct: 221 GGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHE 280

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +  E+   G  P+ +T+T+++    +    +  + ++  M+ +G   +   +  +I 
Sbjct: 281 ALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALID 340

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F K G L +A   + +M    +Q  +V YN LIN YC  G+++ A  L+ EME +G + 
Sbjct: 341 GFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKP 400

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T++ ++   CK G+   A    + M + G   +   Y+ ++  L ++ ++  A  +F
Sbjct: 401 DVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLF 460

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           ++M       D  TY+S++   CK   +  A  L    +K+GV         +++GL  S
Sbjct: 461 KNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKS 520

Query: 300 GCRREAKKIQSKI 312
              +EA+++  K+
Sbjct: 521 ARTKEAQRLLFKL 533



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 155/320 (48%), Gaps = 19/320 (5%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF  +++G CK  + D+AL   R +++    P +V YN LI G C  GR+  AR +++E+
Sbjct: 334 TFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREM 393

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ +TY+TI+    +N       ++   M   G   D   Y ++I    +  RL
Sbjct: 394 EAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRL 453

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A    + M++ G+Q D V+Y +LI+ +CKEG +E A  L DEM K G   D  T+++L
Sbjct: 454 GDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVL 513

Query: 192 IDGLCKAGNIKGAR------LHLEYMN-KIGFD--------SNLEAYNCIVDRLGKDGKI 236
           I+GL K+   K A+       H E +   I +D        + L++   ++      G +
Sbjct: 514 INGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLM 573

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           + A  V++S+  +    D   YS ++H  C+   +  A       L+ G     ++  ++
Sbjct: 574 NEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISL 633

Query: 293 VDGLRHSGCRREAKKIQSKI 312
           + GL   G   EA ++  ++
Sbjct: 634 IRGLFEKGMVVEADQVIQQL 653



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 125/282 (44%), Gaps = 40/282 (14%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+ P ++ YN ++  L  A  L +AR     +   G APN  TY  +++           
Sbjct: 118 GYAPSVLAYNAVLLALSDAS-LPSARRFFDSMLSDGVAPNVYTYNILVR----------- 165

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
                                   A    G  KEA   +  M   G   + V+YNTL+  
Sbjct: 166 ------------------------ALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAA 201

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +C+ G+++ A  L+D M + G + +  T   +++G+CKAG ++ AR   + M K G   +
Sbjct: 202 FCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPD 261

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
             +YN +V    K G    A++VF  M  K    D  T++S++H +CKA  L  A  L+ 
Sbjct: 262 GVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVR 321

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
              + G+++ +    A++DG    G   +A     ++R  +I
Sbjct: 322 EMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRI 363



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 20/246 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+  +++G CK    + AL +   + K G +P++VTY++LI GL K+ R
Sbjct: 463 MISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSAR 522

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ +L +L      P  I Y  +M+CC RN + K  L +L     KG+   G     
Sbjct: 523 TKEAQRLLFKLYHEEPVPANIKYDALMRCC-RNAELKSVLALL-----KGFCMKGL---- 572

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                     + EA    + ++     LD   Y+ LI+ +C+EG +  A     +M + G
Sbjct: 573 ----------MNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCG 622

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  +  +   LI GL + G +  A   ++ +      ++ EA   ++D   K+G +D  +
Sbjct: 623 FAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVL 682

Query: 241 NVFESM 246
           +V   M
Sbjct: 683 DVLHGM 688



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 15/196 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL--------- 51
           M+   + P   T+++++NGL K+  T  A R+   L     VP  + Y+ L         
Sbjct: 498 MVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAEL 557

Query: 52  ------IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
                 +KG C  G +  A  + + + D     +   Y+ ++    R       L     
Sbjct: 558 KSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQ 617

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M + G+  +     ++I    + G + EA   ++Q++      D  +   LI+L  KEG 
Sbjct: 618 MLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGN 677

Query: 166 LEAAYLLLDEMEKQGF 181
           ++A   +L  M + G 
Sbjct: 678 VDAVLDVLHGMARDGL 693


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 140/271 (51%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       +L     +   GF  + V+Y  L+ GLCK G  R A  +
Sbjct: 78  PDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKL 137

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ + D    PN + Y TI+    +++      ++ S M  +G   D   Y T+I  F  
Sbjct: 138 LRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCL 197

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L  A   +++M+   +   +  YN LIN  CKEG ++ A  LL  M K+G +    T
Sbjct: 198 LGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVT 257

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           ++ L+DG C  G ++ A+     M ++G + N+ +YN +++ L K  ++D A+N+   M 
Sbjct: 258 YSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREML 317

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
               V D+ TY+S++  LCK+ R+ SA  L+
Sbjct: 318 HKNMVPDTVTYNSLIDGLCKSGRITSALNLM 348



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 148/310 (47%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++GLCK++  + A  ++  +   G  P+ +TY  LI G C  G+L  A  +
Sbjct: 148 PNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSL 207

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P    Y  ++    +    K    +L+ M ++G       Y T++  +  
Sbjct: 208 LDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCL 267

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G ++ A      MV  GV  ++ SYN +IN  CK  +++ A  LL EM  +    D  T
Sbjct: 268 VGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVT 327

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LIDGLCK+G I  A   +  M+  G  +++  Y  ++D L K+  +D A  +F  M+
Sbjct: 328 YNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK 387

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +      +TY++++  LCK  RL +A +L    L  G  I       ++ GL   G   
Sbjct: 388 ERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFD 447

Query: 304 EAKKIQSKIR 313
           EA  I+SK+ 
Sbjct: 448 EALAIKSKME 457



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 142/289 (49%), Gaps = 4/289 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P    +NI++N LCK      A  +   + K G  P +VTY+ L+ G C  G 
Sbjct: 211 MILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGE 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ I   +   G  PN  +Y  ++    + ++    + +L  M  K    D   Y +
Sbjct: 271 VQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNS 330

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+  A + M +M   G   D+V+Y +L++  CK   L+ A  L  +M+++G
Sbjct: 331 LIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 390

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +   YT+T LIDGLCK G +K A+   +++   G   ++  Y  ++  L K+G  D A+
Sbjct: 391 IQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEAL 450

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
            +   ME    + ++ T+  ++ +L +      A KLL   +  G+ +L
Sbjct: 451 AIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLVL 499



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 145/333 (43%), Gaps = 39/333 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    FN +L  L K +    A+ + + ++  G     VT NILI   C  G++  +  
Sbjct: 7   TPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFS 66

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++   G+ P+ IT  T+MK      + K  L     +  +G+  D   Y T++    
Sbjct: 67  VLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLC 126

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE----------------------- 163
           KIG  + A   +  +     + ++V YNT+I+  CK+                       
Sbjct: 127 KIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAI 186

Query: 164 ------------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                       G+L  A+ LLDEM  +      Y + ILI+ LCK GN+K A+  L  M
Sbjct: 187 TYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVM 246

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRL 267
            K G    +  Y+ ++D     G++ +A  +F +M       + ++Y+ M++ LCK KR+
Sbjct: 247 TKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRV 306

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             A  LL   L   +        +++DGL  SG
Sbjct: 307 DEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSG 339



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 127/277 (45%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ +++G C      NA ++F  + + G  P + +YNI+I GLCK  R+  A 
Sbjct: 251 IKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAM 310

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+      P+ +TY +++    ++ +    L +++ M  +G   D   Y +++ A 
Sbjct: 311 NLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDAL 370

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   L +AT    +M   G+Q  + +Y  LI+  CK G+L+ A  L   +  +G   D 
Sbjct: 371 CKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDV 430

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+T++I GLCK G    A      M   G   N   +  I+  L +  + D A  +   
Sbjct: 431 WTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHE 490

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M  K        V ++        A KLL   +  G+
Sbjct: 491 MIAKGLLVLDFKVADVFVQNENDKAEKLLHEMIAKGL 527



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P  I +  I+    + ++Y   + +   M+ KG   +      +I  F  +G++  + 
Sbjct: 6   HTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSF 65

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             + +++  G Q D ++ NTL+   C +G+++ +    D++  QGF+ D  ++  L++GL
Sbjct: 66  SVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGL 125

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G  + A   L  +       N+  YN I+D L KD  ++ A +++  M+ +    D+
Sbjct: 126 CKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDA 185

Query: 252 FTYSSMVHNLCKAKRLPSASKLL----LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
            TY+++++  C   +L  A  LL    L  +  GV I       +++ L   G  +EAK 
Sbjct: 186 ITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYI----YNILINALCKEGNVKEAKN 241

Query: 308 I 308
           +
Sbjct: 242 L 242


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 142/280 (50%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P TATF  ++ GLC      +AL +F  +   GF P +VTY  LI GLCK G    A 
Sbjct: 133 LQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAI 192

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ +      P+ + YT+I+    ++R+      + S M  +G + D F Y ++I + 
Sbjct: 193 RLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSL 252

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +   K  T  + QM+   +  D+V ++T+++  CKEGK+  A+ ++D M  +G E + 
Sbjct: 253 CNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNV 312

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+DG C    +  A    + M   G+  N+ +YN +++   K  ++D A  +FE 
Sbjct: 313 VTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEE 372

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           M     + ++ TY++++H LC   RL  A  L    +  G
Sbjct: 373 MCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHG 412



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 153/316 (48%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T+ A+R+ R +++    P++V Y  +I  LCK  +
Sbjct: 163 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 222

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++   G +P+  TYT+++       ++K    +L+ M       D   + T
Sbjct: 223 VTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFST 282

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G++ EA D ++ M+  GV+ ++V+YN L++ +C + +++ A  + D M   G
Sbjct: 283 VVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 342

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  +  ++  LI+G CK   +  A    E M +     N   YN ++  L   G++  AI
Sbjct: 343 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAI 402

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M    ++ D  TY  ++  LCK   L  A  LL +   S +         V+DG+
Sbjct: 403 ALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGM 462

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A+ I S +
Sbjct: 463 CRAGELEAARDIFSNL 478



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 138/279 (49%), Gaps = 4/279 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+  +++ LC      +   +   +     +P++V ++ ++  LCK G+
Sbjct: 233 MVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGK 292

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++  +   G  PN +TY  +M       +    +++   M   GY  +   Y T
Sbjct: 293 ITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNT 352

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + KI R+ +AT   E+M    +  + V+YNTL++  C  G+L+ A  L  EM   G
Sbjct: 353 LINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHG 412

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+ IL+D LCK  ++  A   L+ +     D +++ Y  ++D + + G+++ A 
Sbjct: 413 QIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 472

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
           ++F ++  K    +  TY+ M++ LC+   L  A+KL +
Sbjct: 473 DIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFM 511



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 141/304 (46%), Gaps = 4/304 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T NI++N  C       A  +   + K G  P+  T+  LI+GLC  G++  A 
Sbjct: 98  IPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDAL 157

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TY T++    +       + +L +M++     D   Y ++I + 
Sbjct: 158 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 217

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA +   +MV  G+  DI +Y +LI+  C   + +    LL++M       D 
Sbjct: 218 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 277

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              + ++D LCK G I  A   ++ M   G + N+  YN ++D      ++D A+ VF++
Sbjct: 278 VIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT 337

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       +  +Y+++++  CK +R+  A+ L     +  +         ++ GL H G 
Sbjct: 338 MVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGR 397

Query: 302 RREA 305
            ++A
Sbjct: 398 LQDA 401



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 129/278 (46%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N +++G C     D A+++F  +  +G+ P +++YN LI G CK  R
Sbjct: 303 MIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQR 362

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A ++ +E+      PN +TY T+M       + +  + +   M   G   D   Y  
Sbjct: 363 MDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRI 422

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K   L EA   ++ +    +  DI  Y  +I+  C+ G+LEAA  +   +  +G
Sbjct: 423 LLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKG 482

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+TI+I+GLC+ G +  A      M+  G   +   YN I   L ++ +   AI
Sbjct: 483 LRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAI 542

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            + + M  +    D  T + +V  LC  K   S  ++L
Sbjct: 543 QLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQIL 580



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 124/278 (44%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN +L  + K +       +   +   G  P++ T NILI   C   R   A  +
Sbjct: 65  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSV 124

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G  P+  T+TT+++      K    L +   M  +G+  +   Y T+I    K
Sbjct: 125 LAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK 184

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G    A   +  M     Q D+V Y ++I+  CK+ ++  A+ L  +M  QG   D +T
Sbjct: 185 VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFT 244

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LI  LC     K     L  M       ++  ++ +VD L K+GKI  A +V + M 
Sbjct: 245 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 304

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++    +  TY++++   C    +  A K+  + + +G
Sbjct: 305 IRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 342



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 80/175 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P  AT+ I+L+ LCK  + D A+ + + ++     P++  Y I+I G+C+AG 
Sbjct: 408 MVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGE 467

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR I   L   G  PN  TYT ++    R        ++   M   G + DG  Y T
Sbjct: 468 LEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNT 527

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           +    ++      A   +++M+  G   D+ +   L+ + C +   ++   +L E
Sbjct: 528 ITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSE 582


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 161/315 (51%), Gaps = 10/315 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+  +++GLCK R   +A++  + + + G  P+LVTYN LI GLC A R+  A  
Sbjct: 42  APNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGL 101

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+EL  +G APN ITY+T++    R R+      ++  M  +G   +   Y   I  F 
Sbjct: 102 VLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFC 161

Query: 127 KI---GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +        E  D  ++M+  G   D+V+YNT I+  CK GKL+    +L+EM++ G   
Sbjct: 162 EARCQSSRYECRD-GDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPP 220

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T   +I GLCKA  I  A    + M + G   +   Y+ ++D L +  ++D    V 
Sbjct: 221 DVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVL 280

Query: 244 ESME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           E M+      V + +T+++ +  LC++ + P A  +LL  ++SG      +   V+DGL 
Sbjct: 281 EHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLC 340

Query: 298 HSGCRREAKKIQSKI 312
            SG   +A K+  K+
Sbjct: 341 KSGNVDDAWKLSRKM 355



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 43/316 (13%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           +  +G+   +VTY  LI GLCK+G L  A+ +L+++ D+G APN +TYT ++    + R+
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
               ++ +  M R G   D   Y ++I       R+ +A   ++++V +G   + ++Y+T
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQG------------------------FEC-------- 183
           L+   C+  +L+ A  L+ EM  +G                        +EC        
Sbjct: 121 LVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIE 180

Query: 184 -----DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
                D  T+   I GLCKAG +      LE M++ G   ++  +  I+  L K  +ID 
Sbjct: 181 SGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDD 240

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL--LSCLKSGVRILKSAQKAV 292
           A  VF+ M     V DS TYS M+ NL +A RL +  ++L  +  +K+G  +      A 
Sbjct: 241 AFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAF 300

Query: 293 VDGLRHSGCRREAKKI 308
           +  L  SG    AK I
Sbjct: 301 IGALCRSGKFPLAKNI 316



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 142/313 (45%), Gaps = 43/313 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+N  ++GLCK    D  L M   + + G  P++VT+  +I GLCKA R
Sbjct: 178 MIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANR 237

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK------------------------CCF----- 91
           +  A  + K + + G  P+++TY+ ++                         C       
Sbjct: 238 IDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTH 297

Query: 92  --------RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
                   R+ K+ L   IL  M   G   +   Y  VI    K G + +A     +M+ 
Sbjct: 298 NAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLD 357

Query: 144 DG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTILIDGLCKAGNI 201
            G  + D++ +NTLI+ +CK G+L  A+ LL EM+ +     D  T+  LIDG  K G++
Sbjct: 358 SGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSL 417

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSM 257
           K A+L L+ M  +G   N+  Y  +++   K G  + A ++F+ M  K    D  TY+++
Sbjct: 418 KQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTV 477

Query: 258 VHNLCKAKRLPSA 270
           +    KA  +  A
Sbjct: 478 LSAFSKAGMMSKA 490



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 45/351 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++GLC     D+A  + + L ++GF P  +TY+ L+   C+  RL  AR +
Sbjct: 78  PDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGL 137

Query: 68  LKEL---------------------------------GD----SGHAPNAITYTTIMKCC 90
           ++E+                                 GD    SG  P+ +TY T +   
Sbjct: 138 IREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGL 197

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +  K   GLE+L  M R G   D   +C++I+   K  R+ +A    + M+  G   D 
Sbjct: 198 CKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDS 257

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEME--KQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++Y+ +++   +  +L+    +L+ M+  K G   + YTH   I  LC++G    A+  L
Sbjct: 258 LTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNIL 317

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-----VKDSFTYSSMVHNLCK 263
             M + G   NL +YN ++D L K G +D A  +   M        D   +++++   CK
Sbjct: 318 LGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCK 377

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQ-KAVVDGLRHSGCRREAKKIQSKIR 313
           A RL  A +LL+      + +        ++DG    G  ++AK +  +++
Sbjct: 378 AGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQ 428



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 6/261 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P    FN +++G CK      A ++   ++ K+  VP++VTYN LI G  K G L+ A+ 
Sbjct: 363 PDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKL 422

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+   G  PN +TY  ++    ++  Y+    +   M  KG   D   Y TV++AF 
Sbjct: 423 LLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFS 482

Query: 127 KIGRLKEATDYMEQM--VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           K G + +A    +Q+   T     D ++Y  LI+ YC+    E    LL EM  +G+ CD
Sbjct: 483 KAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCD 542

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYNCIVDRLGKDGKIDHAINV 242
            YT+ +LI  L +   +    L + Y   +  D   +   +N +V    + G ++ A ++
Sbjct: 543 SYTYNVLIAKLAETEEVPSKALAV-YQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSM 601

Query: 243 FESMEVKDSFTYSSMVHNLCK 263
            + M  K     +S +  L K
Sbjct: 602 VQEMNEKGHLVDASNLEALNK 622



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 8/266 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T N  +  LC++     A  +  G+ + G +P L++YN +I GLCK+G +  A  + +++
Sbjct: 296 THNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKM 355

Query: 72  GDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIG 129
            DSG   P+ I + T++    +  +     ++L  MK K     D   Y T+I    K G
Sbjct: 356 LDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFG 415

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            LK+A   +++M   G + ++V+Y  LIN Y K G  E A  L DEM  +G   D  T+ 
Sbjct: 416 SLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYN 475

Query: 190 ILIDGLCKAGNIKGAR-LHLEYMNKIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESME 247
            ++    KAG +  A  ++ +  NK  + S +   Y  ++D   +    +  + + + M 
Sbjct: 476 TVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMT 535

Query: 248 VK----DSFTYSSMVHNLCKAKRLPS 269
            +    DS+TY+ ++  L + + +PS
Sbjct: 536 ARGWSCDSYTYNVLIAKLAETEEVPS 561


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 142/278 (51%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF +++NG CKN  T  A+R+F  +++ G    +VTYN LI GLC  G+
Sbjct: 255 MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGK 314

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +++E+ D G +PN IT+  ++K   +        + +  M  +    D   Y  
Sbjct: 315 VEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNI 374

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + ++G++++A    E M   G+  ++ +YN LI  + + G   +A  LLDEM+++G
Sbjct: 375 LIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG 434

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D  T+ +LI  LC  G ++ A   L+ M+++G + N   YN I+      G I  A 
Sbjct: 435 IEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAY 494

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +   ME      +  TY+  +   C+  ++  A+ LL
Sbjct: 495 EIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLL 532



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 141/275 (51%), Gaps = 7/275 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALR---MFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           L P  AT+N +++G CK     N      + + + + G  P  VT+ +LI G CK     
Sbjct: 222 LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTA 281

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  + +E+   G A + +TY +++       K + G++++  M+  G + +   +  V+
Sbjct: 282 AAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVL 341

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K G + +A D+++ M    V+ D+V YN LI++Y + GK+E A  + + M K+G  
Sbjct: 342 KGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGIS 401

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+  LI G  ++G+ + A   L+ M + G ++++  YN ++  L   G++  A+ +
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 243 FESM-EV---KDSFTYSSMVHNLCKAKRLPSASKL 273
            + M EV    +  TY++++   C    + SA ++
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 150/314 (47%), Gaps = 7/314 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK---AGRLR 62
           ++P   TFN +++GLC+      A  + + ++  G  P + TYN LI G CK   AG + 
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
               +LKE+ ++G +P A+T+  ++    +N      + +   MK++G       Y ++I
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +     G+++E    ME+M   G+  + +++  ++  +CK+G +  A   +D M ++  E
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D   + ILID   + G ++ A    E M K G   N+  YNC++    + G    A  +
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            + M+ K    D  TY+ ++  LC    +  A KLL    + G+         ++ G   
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCD 486

Query: 299 SGCRREAKKIQSKI 312
            G  + A +I++++
Sbjct: 487 KGNIKSAYEIRTRM 500



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 9/283 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T++ N +L GL   +  D A + FR   +    P++ T+N +I GLC+ G+LR A  +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 68  LKELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            K++   G AP+  TY +++    K       Y + + +L  M   G +     +  +I 
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDM-LLKEMVEAGISPTAVTFGVLIN 272

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            + K      A    E+M   G+   +V+YN+LI+  C EGK+E    L++EME  G   
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           ++ T   ++ G CK G +  A   ++ M +   + ++  YN ++D   + GK++ A+ V 
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVK 392

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           E+M  K    +  TY+ ++    ++    SAS LL    + G+
Sbjct: 393 EAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGI 435



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 7/206 (3%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P+  +   ++      ++  L  +   +  R+  + D + + TVI+   +IG+L++A 
Sbjct: 152 HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY---LLLDEMEKQGFECDKYTHTILI 192
           D  + +   G+   + +YN+LI+ YCK+G     Y   +LL EM + G      T  +LI
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
           +G CK  N   A    E M + G  +++  YN ++  L  +GK++  + + E ME     
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +  T+  ++   CK   +  A+  +
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWI 357



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 98/197 (49%), Gaps = 4/197 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P    +NI+++   +    ++A+ +   + K G  P + TYN LI G  ++G  R+A
Sbjct: 364 NVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSA 423

Query: 65  RWILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
             +L E+ + G   + +TY  ++   CC    + +  +++L  M   G   +   Y T+I
Sbjct: 424 SGLLDEMKEKGIEADVVTYNVLIGALCC--KGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F   G +K A +   +M     + ++V+YN  I  +C+ GK++ A  LL+EM  +   
Sbjct: 482 QGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541

Query: 183 CDKYTHTILIDGLCKAG 199
            +  T+  + +G+ + G
Sbjct: 542 PNGITYETIKEGMMEKG 558


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +L GLC       A+ +F G+   G  P+   Y+I++ GLC AGR   A  +L + 
Sbjct: 146 TYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDA 205

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN   Y  ++         +L ++I   M+ KG   +   Y  +I  F K G++
Sbjct: 206 MGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKV 265

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A     +M+  G+  ++V+Y TLI   C EG LE A+ LL  ME  G   +++T  +L
Sbjct: 266 ERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVL 325

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           ID LCK G I+ A+  L  + + G   N   Y  ++D L K GK D A N+ + +     
Sbjct: 326 IDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGF 385

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           V D+  YSS++  LC+  +L  A  LL   ++SGV+
Sbjct: 386 VPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQ 421



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 114/246 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+  ++ G C   + ++A R+   ++  G  P   T  +LI  LCK GR
Sbjct: 275 MIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGR 334

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+  L  L   G   N + YT+++    ++ K+     ++  +  +G+  D   Y +
Sbjct: 335 IEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSS 394

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    +  +L EA   +  M+  GVQ + V +  LI+ + +E + ++  ++ D M   G
Sbjct: 395 LIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAG 454

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+T+ I   C+ G ++ A   +  M   G   NL  YN ++      G +  A 
Sbjct: 455 VKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAF 514

Query: 241 NVFESM 246
           +  ++M
Sbjct: 515 SSLKNM 520



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 135/302 (44%), Gaps = 39/302 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++ G CK+   + A+ ++  + + G  P +VTY  LI+G C  G L  A  +
Sbjct: 247 PNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRL 306

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G APN  T       C                              +I A  K
Sbjct: 307 LHSMEACGLAPNEWT-------CL----------------------------VLIDALCK 331

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR++EA  ++  +V  G++++ V Y ++I+  CK GK + A+ L+ ++  +GF  D + 
Sbjct: 332 HGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHM 391

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLC+   +  A   L  M + G  +N   +  ++D+  ++ + D    + + M 
Sbjct: 392 YSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMA 451

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY+  + + C+  R+  A  +++  +  GVR   +    ++ G  + G   
Sbjct: 452 AAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVS 511

Query: 304 EA 305
           +A
Sbjct: 512 QA 513



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 138/320 (43%), Gaps = 20/320 (6%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  M++ LCK+   D A  + + +   GFVP+   Y+ LI GLC+  +L  A  +L ++ 
Sbjct: 357 YTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMI 416

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +SG   NA+ +T ++    R  +      I   M   G   D   Y   I ++ + GR++
Sbjct: 417 ESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRME 476

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   M QM+  GV+ ++ +YNTLI  Y   G +  A+  L  M   G + +  ++T+L+
Sbjct: 477 DAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLL 536

Query: 193 D----------------GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
                             L K  ++K     LE + K+   S    Y+C +  L K  ++
Sbjct: 537 GLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRL 596

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           + A +    M+          Y+ M+    + K L  A + L S +K        + + +
Sbjct: 597 EEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFI 656

Query: 293 VDGLRHSGCRREAKKIQSKI 312
           +  L   G    AK I   I
Sbjct: 657 ICALCEEGSFHTAKSIFGDI 676



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 125/311 (40%), Gaps = 41/311 (13%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
           V  L TY  LI   C AG L  A+  L  L  +G AP++  YT+ +    R   +     
Sbjct: 71  VRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACR 130

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +   M ++G     F Y  ++      G ++EA      M  DG   D   Y+ +++  C
Sbjct: 131 LFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLC 190

Query: 162 KEGKL-EAAYLLLDEMEKQGFECDKYTHTILIDGLC------------------------ 196
             G+  EA  LL D M K GF  +   +  LIDG C                        
Sbjct: 191 GAGRAGEAVALLTDAMGK-GFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNV 249

Query: 197 -----------KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
                      K+G ++ A +    M + G   N+  Y  ++     +G ++HA  +  S
Sbjct: 250 RTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHS 309

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME      + +T   ++  LCK  R+  A + L S ++ G+++ +    +++D L  SG 
Sbjct: 310 MEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGK 369

Query: 302 RREAKKIQSKI 312
              A  +  KI
Sbjct: 370 FDGAHNLMQKI 380



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 10/186 (5%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++ A  + G L +    ME +       ++ +Y TLIN YC  G L AA   L  + + 
Sbjct: 48  TLLMALARHGMLSD----MESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRA 103

Query: 180 GFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           G   D + +T  + G C+ G    A RL L  M + G       Y  ++  L   G +  
Sbjct: 104 GLAPDSHAYTSFVLGYCRTGLFAHACRLFL-LMPQRGCARTPFTYAALLQGLCGAGMVRE 162

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A+ VF  M       DS  YS MVH LC A R   A  LL   +  G     +   A++D
Sbjct: 163 AMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALID 222

Query: 295 GLRHSG 300
           G   +G
Sbjct: 223 GYCSTG 228



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 98/264 (37%), Gaps = 51/264 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+ + +   C++   ++A  M   +  HG  P L TYN LIKG    G 
Sbjct: 450 MAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGL 509

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY----------------KLGLEILS 104
           +  A   LK + D+G  PN  +YT ++    +   Y                K+  E+L 
Sbjct: 510 VSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLE 569

Query: 105 AM-----KRKGYTFDGFGYCT------------------------------VIAAFVKIG 129
            +         Y +D F  C                               +I    ++ 
Sbjct: 570 EVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMK 629

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            LKEA  +++ MV       + SY  +I   C+EG    A  +  ++  + +  D+    
Sbjct: 630 LLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWK 689

Query: 190 ILIDGLCKAGNIKGARLHLEYMNK 213
           ILIDGL + GN       L +M +
Sbjct: 690 ILIDGLLQKGNTADCSRLLSFMEE 713


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++ GLC       AL +F  +   GF P +VTY  LI GLCK G    A  +
Sbjct: 133 PDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRL 192

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      P+ + YT+I+    ++R+      + S M  +G + D F Y +++ A   
Sbjct: 193 LRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCN 252

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  + QMV   +  D+V ++T+++  CKEGK+  A+ ++D M ++G E D  T
Sbjct: 253 LCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVT 312

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +T L+DG C    +  A    + M + GF  ++ +Y  +++   K  KID A+ +FE M 
Sbjct: 313 YTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMC 372

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               + D+ TY+++++ LC   RL  A  L    +  G
Sbjct: 373 RKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARG 410



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 160/316 (50%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T  A+R+ R +++    P++V Y  +I  LCK  +
Sbjct: 161 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQ 220

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++   G +P+  TYT+++       ++K    +L+ M       D   + T
Sbjct: 221 VTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFST 280

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G++ EA + ++ M+  GV+ D+V+Y TL++ +C + +++ A  + D M ++G
Sbjct: 281 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 340

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D  ++T LI+G CK   I  A    E M +  +  + + YN ++  L   G++  AI
Sbjct: 341 FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAI 400

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M    ++ D  TYS ++ +LCK + L  A  LL +   S +         ++DG+
Sbjct: 401 ALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 460

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A+ + S +
Sbjct: 461 CRAGELEAARDLFSNL 476



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 4/285 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+ +++ LCK      A  +   + + G  P++VTY  L+ G C    
Sbjct: 266 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSE 325

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G AP+ I+YTT++    +  K    + +   M RK +  D   Y T
Sbjct: 326 MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 385

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++     +GRL++A     +MV  G   D+V+Y+ L++  CK   LE A  LL  +E   
Sbjct: 386 LMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASN 445

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D   + I+IDG+C+AG ++ AR     ++  G   ++  YN ++  L K G ++ A 
Sbjct: 446 LNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEAN 505

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +F  M+      D  TY+++     +      A +LL   L  G
Sbjct: 506 KLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARG 550



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 122/279 (43%), Gaps = 4/279 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F  +L  + K ++    L +   +   G  P + T NILI   C   R+  A  
Sbjct: 62  PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFS 121

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++   GH P+  T+TT+++      K    L +   M  +G+  +   Y T+I    
Sbjct: 122 VLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLC 181

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G    A   +  M     Q D+V Y ++I+  CK+ ++  A+ L  +M  QG   D +
Sbjct: 182 KVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIF 241

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L+  LC     K     L  M       ++  ++ +VD L K+GK+  A  + + M
Sbjct: 242 TYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMM 301

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             +    D  TY++++   C    +  A K+    ++ G
Sbjct: 302 IQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 340



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 101/219 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   ++  ++NG CK    D A+ +F  + +  ++P+  TYN L+ GLC  GR
Sbjct: 336 MVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGR 395

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +  E+   G  P+ +TY+ ++    +NR  +  + +L A++      D   Y  
Sbjct: 396 LQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNI 455

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G L+ A D    + + G+   + +YN +I+  CK G L  A  L  EM+   
Sbjct: 456 IIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGND 515

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
              D  T+  +  G  +      A   LE M   GF ++
Sbjct: 516 CSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSAD 554


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 157/314 (50%), Gaps = 4/314 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +      +N +++GLCK ++ D+AL +F  +   G  P++ TY+ LI  LC  GR   
Sbjct: 252 GKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSD 311

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++ +    PN +T++ ++    +  K     ++   M ++    D F Y ++I 
Sbjct: 312 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 371

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA    E M++     ++V+Y+TLI  +CK  ++E    L  EM ++G   
Sbjct: 372 GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVG 431

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+T LI G  +A +   A++  + M  +G   N+  YN ++D L K+GK+  A+ VF
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF 491

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++      D +TY+ M+  +CKA ++    +L  +    GV     A   ++ G    
Sbjct: 492 EYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRK 551

Query: 300 GCRREAKKIQSKIR 313
           G + EA  +  K++
Sbjct: 552 GSKEEADSLLKKMK 565



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 136/267 (50%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++I +N  C+      AL +   + K G+ P++VT + L+ G C + R+  A  ++ ++
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+  T+TT++   F + K    + ++  M ++G   D   Y TV+    K G +
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A   +++M    ++ D+V YNT+I+  CK   ++ A  L  EM+ +G   D +T++ L
Sbjct: 240 DLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL 299

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + N+  ++ ++D   K+GK+  A  +++ M  +  
Sbjct: 300 ISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D FTYSS+++  C   RL  A  + 
Sbjct: 360 DPDIFTYSSLINGFCMHDRLDEAKHMF 386



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 134/265 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ +++   K      A +++  + K    P++ TY+ LI G C   R
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 378

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      PN +TY+T++K   + ++ + G+E+   M ++G   +   Y T
Sbjct: 379 LDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTT 438

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F +      A    +QMV+ GV  +I++YN L++  CK GKL  A ++ + +++  
Sbjct: 439 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 498

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D YT+ I+I+G+CKAG ++        ++  G   N+ AYN ++    + G  + A 
Sbjct: 499 MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEAD 558

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAK 265
           ++ + M+       S   + L +A+
Sbjct: 559 SLLKKMKEDGPLPNSGTYNTLIRAR 583



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 144/297 (48%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  +++GL  +     A+ +   + + G  P+LVTY  ++ GLCK G +  A  +
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSL 245

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++       + + Y TI+    + +     L + + M  KG   D F Y ++I+    
Sbjct: 246 LKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 305

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V+++ LI+ + KEGKL  A  L DEM K+  + D +T
Sbjct: 306 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 365

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI+G C    +  A+   E M       N+  Y+ ++    K  +++  + +F  M 
Sbjct: 366 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               V ++ TY++++H   +A+   +A  +    +  GV         ++DGL  +G
Sbjct: 426 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 149/302 (49%), Gaps = 4/302 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           I+ N L      D+A+ +F  + K    P +V +N L+  + K  +      + +++   
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G + +  TY+  + C  R  +  L L +L+ M + GY  D     +++  +    R+ +A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              ++QMV  G + D  ++ TLI+      K   A  L+D+M ++G + D  T+  +++G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
           LCK G+I  A   L+ M K   ++++  YN I+D L K   +D A+N+F  M+ K    D
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
            FTYSS++  LC   R   AS+LL   ++  +        A++D     G   EA+K+  
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352

Query: 311 KI 312
           ++
Sbjct: 353 EM 354



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 133/279 (47%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + +LNG C ++   +A+ +   + + G+ P+  T+  LI GL    +   A  +
Sbjct: 151 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL 210

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  P+ +TY T++    +     L L +L  M++     D   Y T+I    K
Sbjct: 211 VDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCK 270

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A +   +M   G++ D+ +Y++LI+  C  G+   A  LL +M ++    +  T
Sbjct: 271 YKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 330

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + LID   K G +  A    + M K   D ++  Y+ +++      ++D A ++FE M 
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 390

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            KD F    TYS+++   CKAKR+    +L     + G+
Sbjct: 391 SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGL 429



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 113/246 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T++ ++NG C +   D A  MF  +      P +VTY+ LIKG CKA R
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +E+   G   N +TYTT++   F+ R       +   M   G   +   Y  
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+L +A    E +    ++ DI +YN +I   CK GK+E  + L   +  +G
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +   +  +I G C+ G+ + A   L+ M + G   N   YN ++    +DG  + + 
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593

Query: 241 NVFESM 246
            + + M
Sbjct: 594 ELIKEM 599



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 116/240 (48%), Gaps = 1/240 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D  P   T++ ++ G CK +  +  + +FR + + G V   VTY  LI G  +A  
Sbjct: 389 MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ + K++   G  PN +TY  ++    +N K    + +   ++R     D + Y  
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 508

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++++  +    +   GV  ++++YNT+I+ +C++G  E A  LL +M++ G
Sbjct: 509 MIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDG 568

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  LI    + G+ + +   ++ M   GF  +      + + L  DG++D + 
Sbjct: 569 PLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLDKSF 627



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 4/245 (1%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P+ + +  ++    +  K++L + +   M+  G + D + Y   I  F +  +L  A   
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           + +M+  G + DIV+ ++L+N YC   ++  A  L+D+M + G++ D +T T LI GL  
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
                 A   ++ M + G   +L  Y  +V+ L K G ID A+++ + ME      D   
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           Y++++  LCK K +  A  L       G+R       +++  L + G   +A ++ S + 
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 314 MAKIS 318
             KI+
Sbjct: 321 ERKIN 325



 Score = 44.3 bits (103), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P    +N M++G C+    + A  + + +++ G +P   TYN LI+   + G    + 
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
            ++KE+   G A +A T   +       R  K  L++LS
Sbjct: 594 ELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 632


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 142/278 (51%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF +++NG CKN  T  A+R+F  +++ G    +VTYN LI GLC  G+
Sbjct: 255 MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGK 314

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +++E+ D G +PN IT+  ++K   +        + +  M  +    D   Y  
Sbjct: 315 VEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNI 374

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + ++G++++A    E M   G+  ++ +YN LI  + + G   +A  LLDEM+++G
Sbjct: 375 LIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG 434

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D  T+ +LI  LC  G ++ A   L+ M+++G + N   YN I+      G I  A 
Sbjct: 435 IEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAY 494

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +   ME      +  TY+  +   C+  ++  A+ LL
Sbjct: 495 EIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLL 532



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 141/275 (51%), Gaps = 7/275 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALR---MFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           L P  AT+N +++G CK     N      + + + + G  P  VT+ +LI G CK     
Sbjct: 222 LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTA 281

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  + +E+   G A + +TY +++       K + G++++  M+  G + +   +  V+
Sbjct: 282 AAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVL 341

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K G + +A D+++ M    V+ D+V YN LI++Y + GK+E A  + + M K+G  
Sbjct: 342 KGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGIS 401

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+  LI G  ++G+ + A   L+ M + G ++++  YN ++  L   G++  A+ +
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 243 FESM-EV---KDSFTYSSMVHNLCKAKRLPSASKL 273
            + M EV    +  TY++++   C    + SA ++
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 150/314 (47%), Gaps = 7/314 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK---AGRLR 62
           ++P   TFN +++GLC+      A  + + ++  G  P + TYN LI G CK   AG + 
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
               +LKE+ ++G +P A+T+  ++    +N      + +   MK++G       Y ++I
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +     G+++E    ME+M   G+  + +++  ++  +CK+G +  A   +D M ++  E
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D   + ILID   + G ++ A    E M K G   N+  YNC++    + G    A  +
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            + M+ K    D  TY+ ++  LC    +  A KLL    + G+         ++ G   
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCD 486

Query: 299 SGCRREAKKIQSKI 312
            G  + A +I++++
Sbjct: 487 KGNIKSAYEIRTRM 500



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 9/283 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T++ N +L GL   +  D A + FR   +    P++ T+N +I GLC+ G+LR A  +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 68  LKELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            K++   G AP+  TY +++    K       Y + + +L  M   G +     +  +I 
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDM-LLKEMVEAGISPTAVTFGVLIN 272

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            + K      A    E+M   G+   +V+YN+LI+  C EGK+E    L++EME  G   
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           ++ T   ++ G CK G +  A   ++ M +   + ++  YN ++D   + GK++ A+ V 
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVK 392

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           E+M  K    +  TY+ ++    ++    SAS LL    + G+
Sbjct: 393 EAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGI 435



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 7/206 (3%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P+  +   ++      ++  L  +   +  R+  + D + + TVI+   +IG+L++A 
Sbjct: 152 HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY---LLLDEMEKQGFECDKYTHTILI 192
           D  + +   G+   + +YN+LI+ YCK+G     Y   +LL EM + G      T  +LI
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
           +G CK  N   A    E M + G  +++  YN ++  L  +GK++  + + E ME     
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +  T+  ++   CK   +  A+  +
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWI 357



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 96/195 (49%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P    +NI+++   +    ++A+ +   + K G  P + TYN LI G  ++G  R+A
Sbjct: 364 NVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSA 423

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+ + G   + +TY  ++       + +  +++L  M   G   +   Y T+I  
Sbjct: 424 SGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQG 483

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   G +K A +   +M     + ++V+YN  I  +C+ GK++ A  LL+EM  +    +
Sbjct: 484 FCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPN 543

Query: 185 KYTHTILIDGLCKAG 199
             T+  + +G+ + G
Sbjct: 544 GITYETIKEGMMEKG 558


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 146/269 (54%), Gaps = 1/269 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+C+    D+A ++   L  +GF P+ V+Y  ++KGLC A R      
Sbjct: 204 TPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEV 263

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  E+ ++   PN +T+  +++   R    +  +E+L  M   G T +      VI +  
Sbjct: 264 LFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSIC 323

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+ +A +++  M + G   D +SY T++   C+ G+ E A  LL+EM ++    ++ 
Sbjct: 324 KQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEV 383

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T    I  LC+ G I  A L +E M + G    +  YN +V+     G++D A+ +F S+
Sbjct: 384 TFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL 443

Query: 247 EVK-DSFTYSSMVHNLCKAKRLPSASKLL 274
             + ++ TY++++  LC A+RL +A++LL
Sbjct: 444 PCEPNTITYTTLLTGLCHAERLDAAAELL 472



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 149/312 (47%), Gaps = 7/312 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   TF++++   C+    + A+ +   + +HG        NI+I  +CK GR
Sbjct: 268 MVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGR 327

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L  +G  G +P+ I+YTT++K   R  +++   E+L+ M RK    +   + T
Sbjct: 328 VDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNT 387

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I    + G + +A   +EQM   G  + IV+YN L+N +C +G++++A  L + +    
Sbjct: 388 FICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLP--- 444

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+T L+ GLC A  +  A   L  M +     N+  +N +V    + G ++ AI
Sbjct: 445 CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAI 504

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + M       +  T+++++  + +      A +LL   +  G+ +      ++VD L
Sbjct: 505 ELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVL 564

Query: 297 RHSGCRREAKKI 308
                  EA ++
Sbjct: 565 SREDRIEEAVQM 576



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 135/299 (45%), Gaps = 44/299 (14%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++  LC+   T +A R+ R  +  G   ++  YN L+ G C+ GRL  AR ++  +    
Sbjct: 76  LIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---P 132

Query: 76  HAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
             P+A TYT +++  C R R     L +L  M R+        Y  ++ A  K     +A
Sbjct: 133 VPPDAYTYTPLIRGLCDRGRVGD-ALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQA 191

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              +++M   G   +IV+YN +IN  C+E +++ A  +L+ +   GF+ D  ++T ++ G
Sbjct: 192 MKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKG 251

Query: 195 LCKA-----------------------------------GNIKGARLHLEYMNKIGFDSN 219
           LC A                                   G ++ A   L+ M++ G  +N
Sbjct: 252 LCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTAN 311

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
               N +++ + K G++D A     +M       D+ +Y++++  LC+A R   A +LL
Sbjct: 312 TTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELL 370



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 131/286 (45%), Gaps = 7/286 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   TFN  +  LC+    D A+ +   + ++G    +VTYN L+ G C  GR
Sbjct: 373 MVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGR 432

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A  +   L      PN ITYTT++       +     E+L+ M +     +   +  
Sbjct: 433 VDSALELFNSLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNV 489

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F + G ++EA + ++QM+  G   +++++NTL++   ++   E A  LL  +  +G
Sbjct: 490 LVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKG 549

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ ++D L +   I+ A      +  +G       YN I+  L K  + D AI
Sbjct: 550 ISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAI 609

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + F  M     + +  TY  ++  L +   L  A  +L      GV
Sbjct: 610 DFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGV 655



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +++     G AP+    T +++   R  +      +L   +  G   D F Y T
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNT 110

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++A + + GRL  A   +  M    V  D  +Y  LI   C  G++  A  LLD+M ++ 
Sbjct: 111 LVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRE 167

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+T+L++ +CK+     A   L+ M   G   N+  YN I++ + ++ ++D A 
Sbjct: 168 CQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDAR 227

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKR 266
            +   +       D+ +Y++++  LC AKR
Sbjct: 228 QILNRLSSYGFQPDTVSYTTVLKGLCAAKR 257



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 7/250 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A R+       G  P++     LI+ LC+ GR   A  +L+    SG   +   Y T++ 
Sbjct: 54  AARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVA 113

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R  +      ++++M       D + Y  +I      GR+ +A   ++ M+    Q 
Sbjct: 114 GYCRYGRLDAARRLIASMPVPP---DAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQP 170

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
            +V+Y  L+   CK      A  +LDEM  +G   +  T+ ++I+G+C+   +  AR  L
Sbjct: 171 SVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQIL 230

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF----ESMEVKDSFTYSSMVHNLCKA 264
             ++  GF  +  +Y  ++  L    + +    +F    E+  V +  T+  +V   C+ 
Sbjct: 231 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRG 290

Query: 265 KRLPSASKLL 274
             +  A ++L
Sbjct: 291 GMVERAIEVL 300



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 7/148 (4%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA   +E+  + G   D+     LI   C+ G+   A  +L   E  G   D + +  
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNT 110

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---E 247
           L+ G C+ G +  AR  +  M       +   Y  ++  L   G++  A+++ + M   E
Sbjct: 111 LVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRE 167

Query: 248 VKDS-FTYSSMVHNLCKAKRLPSASKLL 274
            + S  TY+ ++  +CK+     A K+L
Sbjct: 168 CQPSVVTYTVLLEAVCKSSGFGQAMKVL 195


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 151/316 (47%), Gaps = 3/316 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +N++++G CK +  D A+ +F+ L     VP + +YN LI GLC +GR
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   + +L E+  S   P+ +TY  ++    +  +    L +L  M +KG   +   Y  
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +     +  A D   +MV  G++ DI++YN LIN YCK   ++ A +L  EM  + 
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKN 505

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  ++  LIDGLC  G I   +  L+ M   G   ++  YN ++D   K    D AI
Sbjct: 506 LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 241 NVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           ++F  +      D +T  ++V NLCK ++L  A   L   L  G          +++ L 
Sbjct: 566 SLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALC 625

Query: 298 HSGCRREAKKIQSKIR 313
             G   EA  + SK+ 
Sbjct: 626 KDGSFGEAMLLLSKME 641



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 10/311 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++NGL KN     AL + + ++K    P LV Y+ LI GLCK G +  A  +  ++
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           G+ G   +A+TY +++  C    +++   ++L+ M R+    D + +  +I A  K GR+
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA   +  M   G + DIV+YN L+  YC    +  A  L + M K+G E D   + +L
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL 341

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           IDG CK   +  A +  + +        + +YN ++D L   G+I H   + + M    +
Sbjct: 342 IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TY+ ++  LCK  R+  A  +L+  +K GV+       A++DG     C R    
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGY----CLRNNVN 457

Query: 308 IQSKI--RMAK 316
           +   I  RM K
Sbjct: 458 VAKDIFNRMVK 468



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 143/307 (46%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P  ATF I++N      +T  A  +   + K G+ P LVT+N +I G C  G +  A 
Sbjct: 86  ISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKAL 145

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              + L   G+  +  TY T++    +N + K  L +L  M++     +   Y  +I   
Sbjct: 146 DFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGL 205

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + +A     Q+   G+ LD V+YN+LI+  C  G+ +    LL +M ++  + D 
Sbjct: 206 CKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDD 265

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  ILID LCK G I  A+  L  M+K G   ++  YN +++       +  A  +F  
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D   Y+ ++   CK K +  A  L        +    ++  +++DGL +SG 
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 302 RREAKKI 308
               KK+
Sbjct: 386 ISHVKKL 392



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T+ F+ +L  + +  +   A+ +F  LQ  G  P + T+ ILI           A  
Sbjct: 52  PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFS 111

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +L  +  SG+ PN +T+ TI+   C     +K  L+    +  +GY FD F Y T+I   
Sbjct: 112 LLATILKSGYQPNLVTFNTIINGFCINGMIFK-ALDFCQNLLAQGYLFDQFTYGTLINGL 170

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++K A   +++M    VQ ++V Y+ LI+  CK+G +  A  L  ++ ++G   D 
Sbjct: 171 SKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDA 230

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDG C  G  +     L  M +   D +   +N ++D L K+G+I  A  V   
Sbjct: 231 VTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAM 290

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M    E  D  TY++++   C  + +  A +L    +K G+         ++DG
Sbjct: 291 MSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 4/285 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFNI+++ LCK      A  +   + K G  P++VTYN L++G C    
Sbjct: 256 MVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN 315

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +   +   G  P+ + Y  ++    + +     + +   +  K        Y +
Sbjct: 316 VHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      GR+      +++M       D+V+YN LI+  CKEG++  A  +L  M K+G
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+  ++DG C   N+  A+     M K G + ++  YN +++   K   +D AI
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAI 495

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +F+ M     + D  +Y+S++  LC   R+P   +LL     SG
Sbjct: 496 VLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSG 540



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 137/308 (44%), Gaps = 40/308 (12%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P  A++N +++GLC +    +  ++   +      P++VTYNILI  LCK GR+  A
Sbjct: 365 NLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEA 424

Query: 65  RWILKELGDSGHAPNAITYTTIMK-CCFRN----------RKYKLGLE------------ 101
             +L  +   G  PN +TY  +M   C RN          R  K GLE            
Sbjct: 425 LGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLING 484

Query: 102 ------------ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
                       +   M+ K    D   Y ++I     +GR+    + +++M   G   D
Sbjct: 485 YCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPD 544

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +++YN L++ +CK    + A  L  ++  +G   D YT+  ++D LCK   +K A   L+
Sbjct: 545 VITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALK 603

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
           ++   G   N++ Y  +++ L KDG    A+ +   ME      D+ T+  ++  L +  
Sbjct: 604 HLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRN 663

Query: 266 RLPSASKL 273
               A KL
Sbjct: 664 ETDKAEKL 671



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 21  CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80
           C+ R  D+A+  F  + +    P    ++ L+  + + G   TA  +  +L   G +P+ 
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
            T+T ++ C F          +L+ + + GY  +   + T+I  F   G + +A D+ + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           ++  G   D  +Y TLIN   K G+++AA  LL EMEK   + +   ++ LIDGLCK G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSS 256
           +  A      + + G   +   YN ++D     G+      +   M  +    D +T++ 
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           ++  LCK  R+  A  +L    K G +       A+++G     C RE
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGY----CSRE 314



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+NI+L+  CK +  D A+ +FR + + G  P+  T + ++  LCK  +L+ A  
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAED 600

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            LK L   G +PN  TYT ++    ++  +   + +LS M+      D   +  +I   +
Sbjct: 601 ALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLL 660

Query: 127 KIGRLKEATDYMEQMVTDGV 146
           +     +A    E+M+  G+
Sbjct: 661 QRNETDKAEKLREEMIARGL 680



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 4/196 (2%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A V++G    A     Q+ + G+   I ++  LIN Y  +     A+ LL  + K G
Sbjct: 61  LLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSG 120

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           ++ +  T   +I+G C  G I  A    + +   G+  +   Y  +++ L K+G+I  A+
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180

Query: 241 NVFESME---VKDSFT-YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + ME   V+ +   YS+++  LCK   +  A  L     + G+ +      +++DG 
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGC 240

Query: 297 RHSGCRREAKKIQSKI 312
              G  +E  ++ +K+
Sbjct: 241 CSVGRWQEVTQLLTKM 256


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 151/316 (47%), Gaps = 3/316 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +N++++G CK +  D A+ +F+ L     VP + +YN LI GLC +GR
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   + +L E+  S   P+ +TY  ++    +  +    L +L  M +KG   +   Y  
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +     +  A D   +MV  G++ DI++YN LIN YCK   ++ A +L  EM  + 
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKN 505

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  ++  LIDGLC  G I   +  L+ M   G   ++  YN ++D   K    D AI
Sbjct: 506 LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 241 NVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           ++F  +      D +T  ++V NLCK ++L  A   L   L  G          +++ L 
Sbjct: 566 SLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALC 625

Query: 298 HSGCRREAKKIQSKIR 313
             G   EA  + SK+ 
Sbjct: 626 KDGSFGEAMLLLSKME 641



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 10/311 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++NGL KN     AL + + ++K    P LV Y+ LI GLCK G +  A  +  ++
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           G+ G   +A+TY +++  C    +++   ++L+ M R+    D + +  +I A  K GR+
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA   +  M   G + DIV+YN L+  YC    +  A  L + M K+G E D   + +L
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL 341

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           IDG CK   +  A +  + +        + +YN ++D L   G+I H   + + M    +
Sbjct: 342 IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TY+ ++  LCK  R+  A  +L+  +K GV+       A++DG     C R    
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGY----CLRNNVN 457

Query: 308 IQSKI--RMAK 316
           +   I  RM K
Sbjct: 458 VAKDIFNRMVK 468



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 143/307 (46%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P  ATF I++N      +T  A  +   + K G+ P LVT+N +I G C  G +  A 
Sbjct: 86  ISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKAL 145

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              + L   G+  +  TY T++    +N + K  L +L  M++     +   Y  +I   
Sbjct: 146 DFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGL 205

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + +A     Q+   G+ LD V+YN+LI+  C  G+ +    LL +M ++  + D 
Sbjct: 206 CKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDD 265

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  ILID LCK G I  A+  L  M+K G   ++  YN +++       +  A  +F  
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D   Y+ ++   CK K +  A  L        +    ++  +++DGL +SG 
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 302 RREAKKI 308
               KK+
Sbjct: 386 ISHVKKL 392



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T+ F+ +L  + +  +   A+ +F  LQ  G  P + T+ ILI           A  
Sbjct: 52  PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFS 111

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +L  +  SG+ PN +T+ TI+   C     +K  L+    +  +GY FD F Y T+I   
Sbjct: 112 LLATILKSGYQPNLVTFNTIINGFCINGMIFK-ALDFCQNLLAQGYLFDQFTYGTLINGL 170

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++K A   +++M    VQ ++V Y+ LI+  CK+G +  A  L  ++ ++G   D 
Sbjct: 171 SKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDA 230

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDG C  G  +     L  M +   D +   +N ++D L K+G+I  A  V   
Sbjct: 231 VTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAM 290

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M    E  D  TY++++   C  + +  A +L    +K G+         ++DG
Sbjct: 291 MSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 4/285 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFNI+++ LCK      A  +   + K G  P++VTYN L++G C    
Sbjct: 256 MVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN 315

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +   +   G  P+ + Y  ++    + +     + +   +  K        Y +
Sbjct: 316 VHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      GR+      +++M       D+V+YN LI+  CKEG++  A  +L  M K+G
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+  ++DG C   N+  A+     M K G + ++  YN +++   K   +D AI
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAI 495

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +F+ M     + D  +Y+S++  LC   R+P   +LL     SG
Sbjct: 496 VLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSG 540



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 145/327 (44%), Gaps = 41/327 (12%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P  A++N +++GLC +    +  ++   +      P++VTYNILI  LCK GR+  A
Sbjct: 365 NLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEA 424

Query: 65  RWILKELGDSGHAPNAITYTTIMK-CCFRN----------RKYKLGLE------------ 101
             +L  +   G  PN +TY  +M   C RN          R  K GLE            
Sbjct: 425 LGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLING 484

Query: 102 ------------ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
                       +   M+ K    D   Y ++I     +GR+    + +++M   G   D
Sbjct: 485 YCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPD 544

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +++YN L++ +CK    + A  L  ++  +G   D YT+  ++D LCK   +K A   L+
Sbjct: 545 VITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALK 603

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
           ++   G   N++ Y  +++ L KDG    A+ +   ME      D+ T+  ++  L +  
Sbjct: 604 HLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRN 663

Query: 266 RLPSASKLLLSCLKSG-VRILKSAQKA 291
               A KL    +  G V I KS  ++
Sbjct: 664 ETDKAEKLREEMIARGLVNIEKSLNQS 690



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 21  CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80
           C+ R  D+A+  F  + +    P    ++ L+  + + G   TA  +  +L   G +P+ 
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
            T+T ++ C F          +L+ + + GY  +   + T+I  F   G + +A D+ + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           ++  G   D  +Y TLIN   K G+++AA  LL EMEK   + +   ++ LIDGLCK G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSS 256
           +  A      + + G   +   YN ++D     G+      +   M  +    D +T++ 
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           ++  LCK  R+  A  +L    K G +       A+++G     C RE
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGY----CSRE 314



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 120/275 (43%), Gaps = 34/275 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +N+++NG CK    D A+ +F+ ++    +P++ +YN LI GLC  GR
Sbjct: 466 MVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGR 525

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   + +L E+ DSG +P+ ITY  ++    + + +   + +   +  +G   D +    
Sbjct: 526 IPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFYTNHA 584

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K  +LK A D ++ ++  G   ++ +Y  LIN  CK+G    A LLL +ME   
Sbjct: 585 IVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDND 644

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNK--------------------IGFDSN 219
              D  T  I+I  L +     K  +L  E + +                     GF S 
Sbjct: 645 RPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEKSLNQSHNVFFPASSGFQSV 704

Query: 220 LEAY------------NCIVDRLGKDGKIDHAINV 242
            E Y            NC  D + +  +I H   V
Sbjct: 705 TEFYRVQASHAGSHRFNCTTDPISRSNQIHHRFTV 739



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 4/196 (2%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A V++G    A     Q+ + G+   I ++  LIN Y  +     A+ LL  + K G
Sbjct: 61  LLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSG 120

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           ++ +  T   +I+G C  G I  A    + +   G+  +   Y  +++ L K+G+I  A+
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180

Query: 241 NVFESME---VKDSFT-YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + ME   V+ +   YS+++  LCK   +  A  L     + G+ +      +++DG 
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGC 240

Query: 297 RHSGCRREAKKIQSKI 312
              G  +E  ++ +K+
Sbjct: 241 CSVGRWQEVTQLLTKM 256



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           ++ L+    + G    A  L  +++ +G      T TILI+      +   A   L  + 
Sbjct: 58  FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATIL 117

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
           K G+  NL  +N I++    +G I  A++  +++  +    D FTY ++++ L K  ++ 
Sbjct: 118 KSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIK 177

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +A  LL    KS V+       A++DGL   G   +A  + S+I
Sbjct: 178 AALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 136/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  ++ GLC       AL     L   GF    ++Y  LI GLCK G  R A  +
Sbjct: 155 PNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDL 214

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN + Y+TI+    +++      ++ S M  KG + +   Y  +I+ F  
Sbjct: 215 LRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFT 274

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LK+A D   +M+++ ++ D+ ++N L++++CK GK+  A  L+DEM  +G   +  T
Sbjct: 275 VGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVT 334

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ ++D LCK   +  A   L  +   G   N+  Y  ++D L   GK++ A N+FE + 
Sbjct: 335 YSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLL 394

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           VK       TY  M +  CK      AS LL
Sbjct: 395 VKGYDITVVTYIVMFYGFCKKGLFDEASALL 425



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 149/307 (48%), Gaps = 6/307 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    FN +L  L K+++    L + + ++  G  P LV  NILI   C+ G +  A  
Sbjct: 84  TPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFS 143

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +  ++   G+ PN IT+TT++K  C + + ++  L     +   G+ F+   Y T+I   
Sbjct: 144 VFAKILKMGYNPNTITFTTLIKGLCLKGQIHQ-ALNFHDKLVALGFQFNQISYGTLIDGL 202

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G  + A D + ++    VQ ++V Y+T+I+  CK+  +  A+ L  EM  +G   + 
Sbjct: 203 CKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNV 262

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LI G    G +K A      M       ++  +N +VD   K GKI +A+ + + 
Sbjct: 263 VTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDE 322

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M    +  +  TYSS++  LCK  R+  A  LL      G+R        ++DGL  SG 
Sbjct: 323 MHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGK 382

Query: 302 RREAKKI 308
             +A+ I
Sbjct: 383 LEDARNI 389



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 107/210 (50%), Gaps = 1/210 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ +++G        +A+ +F  +      P++ T+NIL+   CK+G+
Sbjct: 253 MVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGK 312

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++ E+ D G  PN +TY++I+    +  +    + +L+ +K +G   +   Y  
Sbjct: 313 ISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTI 372

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G+L++A +  E ++  G  + +V+Y  +   +CK+G  + A  LL +ME+ G
Sbjct: 373 LIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENG 432

Query: 181 FECDKYTHTILIDGLCKAG-NIKGARLHLE 209
              D  T+ ++   L K G N    +LH E
Sbjct: 433 CIPDAKTYELIKLSLFKKGENDMAEKLHRE 462



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 115/234 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++G+CK+++ ++A  ++  +   G  P +VTY+ LI G    G+L+ A 
Sbjct: 223 VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAV 282

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+  T+  ++    ++ K    L+++  M  +G   +   Y +++ A 
Sbjct: 283 DLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 342

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ +A   + ++   G++ ++ +Y  LI+  C  GKLE A  + +++  +G++   
Sbjct: 343 CKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITV 402

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            T+ ++  G CK G    A   L  M + G   + + Y  I   L K G+ D A
Sbjct: 403 VTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMA 456



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 107/238 (44%), Gaps = 4/238 (1%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N I Y++       N      + + + + R+  T     +  ++ + VK           
Sbjct: 51  NLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLS 110

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           ++M   G++ ++V+ N LIN +C+ G +  A+ +  ++ K G+  +  T T LI GLC  
Sbjct: 111 KKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLK 170

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTY 254
           G I  A    + +  +GF  N  +Y  ++D L K G+   A+++   ++ K    +   Y
Sbjct: 171 GQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMY 230

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           S+++  +CK K +  A  L    +  G+        A++ G    G  ++A  + +K+
Sbjct: 231 STIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKM 288


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 138/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P TATF  ++ G+        AL +F  +   GF P++VTY  LI GLCK G    A  +
Sbjct: 129 PDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRL 188

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +      PN   Y TI+    ++R+      + S M  KG + D F Y ++I A   
Sbjct: 189 LGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCN 248

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K     + +MV   +  D+VS+NT+++  CKEGK+  A+ ++D+M ++G E +  T
Sbjct: 249 LCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVT 308

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +T L+DG C    +  A    + M   G   N+ +YN +++   K  +ID A+ +F  M 
Sbjct: 309 YTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMC 368

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + D+ TYS+++H LC  +RL  A  L 
Sbjct: 369 RQELIPDTVTYSTLIHGLCHVERLQDAIALF 399



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 157/352 (44%), Gaps = 40/352 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P    +N +++ LCK+R    A  +F  +   G  P++ TYN LI  LC    
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 251

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +    +L E+ DS   P+ +++ T++    +  K     +++  M ++G   +   Y  
Sbjct: 252 WKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTA 311

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++     +  + EA    + MV  G   +++SYNTLIN YCK  +++ A  L  EM +Q 
Sbjct: 312 LMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQE 371

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-------------------RLHLEYMNK-------- 213
              D  T++ LI GLC    ++ A                   R+ L+Y+ K        
Sbjct: 372 LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAM 431

Query: 214 --------IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
                      D +++  N  +D + + G+++ A ++F ++  K    D +TYS M++ L
Sbjct: 432 ALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGL 491

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG-LRHSGCRREAKKIQSKI 312
           C+   L  ASKL     ++G  +       +  G LR++   R  + +Q  +
Sbjct: 492 CRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMV 543



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN +L  + K ++    L +   +   G  P + T +ILI   C   R+  A  +
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+  T+TT+++  +   K    L +   M  +G+  D   Y T+I    K
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G    A   +  MV    Q ++ +YNT+I+  CK+ ++  A+ L  EM  +G   D +T
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI  LC     K     L  M       ++ ++N +VD L K+GK+  A +V + M 
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMI 298

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    +  TY++++   C    +  A K+ 
Sbjct: 299 QRGVEPNVVTYTALMDGHCLLSEMDEAVKVF 329



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 132/273 (48%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T +I++N  C       A  +   + K G  P+  T+  LI+G+   G++  A 
Sbjct: 92  IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEAL 151

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  P+ +TY T++    +       + +L +M +K    + F Y T+I + 
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA +   +MVT G+  DI +YN+LI+  C   + +    LL+EM       D 
Sbjct: 212 CKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDV 271

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +   ++D LCK G +  A   ++ M + G + N+  Y  ++D      ++D A+ VF++
Sbjct: 272 VSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDT 331

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    +  +Y+++++  CK +R+  A  L 
Sbjct: 332 MVCKGCMPNVISYNTLINGYCKIQRIDKAMYLF 364



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 106/234 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C    P   ++N ++NG CK +  D A+ +F  + +   +P+ VTY+ LI GLC   R
Sbjct: 332 MVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVER 391

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +  E+      PN +TY  ++    +NR     + +L A++      D      
Sbjct: 392 LQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNI 451

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I    + G L+ A D    + + G+Q D+ +Y+ +IN  C+ G L+ A  L  EM++ G
Sbjct: 452 AIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENG 511

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
              +   +  +  G  +      A   L+ M   GF ++       V  L  DG
Sbjct: 512 CTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDG 565


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 157/350 (44%), Gaps = 39/350 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF+ ++NGLC       AL +   + + G  P L+T N L+ GLC  G++  A  +
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  + ++G  PN +TY  ++K   ++ +  L +E+L  M+ +    D   Y  +I    K
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-------------------------- 161
            G L  A +   +M   G + DI+ Y TLI  +C                          
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 162 ---------KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                    KEGKL  A  L  EM ++G   D  T+T LIDG CK   +  A   L+ M 
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G   N+  +N +++   K   ID  + +F  M     V D+ TY++++   C+  +L 
Sbjct: 380 SKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE 439

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A +L    +   VR    + K ++DGL  +G   +A +I  KI  +K+ 
Sbjct: 440 VAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 148/297 (49%), Gaps = 4/297 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++I+++GLCK+   DNA  +F  ++  GF  +++ Y  LI+G C AGR      +L+++ 
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                P+ + ++ ++ C  +  K +   E+   M ++G + D   Y ++I  F K  +L 
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   ++ MV+ G   +I ++N LIN YCK   ++    L  +M  +G   D  T+  LI
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            G C+ G ++ A+   + M       ++ +Y  ++D L  +G+ + A+ +FE +E     
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            D   Y+ ++H +C A ++  A  L  S    GV+        ++ GL   G   EA
Sbjct: 490 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEA 546



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 147/296 (49%), Gaps = 4/296 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F+ + +    P L+ ++ L   + +  +      + K++   G A N  T + +
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + CC R RK  L    +  + + GY  D   + T+I      GR+ EA + +++MV  G 
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           +  +++ N L+N  C  GK+  A LL+D M + GF+ ++ T+  ++  +CK+G    A  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L  M +     +   Y+ I+D L KDG +D+A N+F  ME+K    D   Y++++   C
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFC 293

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A R    +KLL   +K  +     A  A++D     G  REA+++  ++    IS
Sbjct: 294 YAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS 349



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T +IM+N  C+ R    A      + K G+ P+ VT++ LI GLC  GR+  A  ++  +
Sbjct: 109 TLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRM 168

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + GH P  IT   ++     N K    + ++  M   G+  +   Y  V+    K G+ 
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++LD V Y+ +I+  CK+G L+ A+ L +EME +GF+ D   +T L
Sbjct: 229 ALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTL 288

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I G C AG        L  M K     ++ A++ ++D   K+GK+  A  + + M  +  
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D+ TY+S++   CK  +L  A+ +L
Sbjct: 349 SPDTVTYTSLIDGFCKENQLDKANHML 375



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 121/260 (46%), Gaps = 12/260 (4%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P   TFNI++NG CK    D+ L +FR +   G V + VTYN LI+G C+ G+L 
Sbjct: 383 CG---PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE 439

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A+ + +E+      P+ ++Y  ++     N + +  LEI   +++     D   Y  +I
Sbjct: 440 VAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIII 499

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
                  ++ +A D    +   GV+ D+ +YN +I   CK+G L  A LL  +ME+ G  
Sbjct: 500 HGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHS 559

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+ ILI      G+   +   +E + + GF  +       +  L +  K  H    
Sbjct: 560 PNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHE--- 616

Query: 243 FESMEVKDSFTYSSMVHNLC 262
                  D FT+++++   C
Sbjct: 617 ------PDVFTFTTLLRPFC 630



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP    F+ +++   K      A  + + + + G  P+ VTY  LI G CK  +
Sbjct: 308 MIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQ 367

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L  +   G  PN  T+  ++    +      GLE+   M  +G   D   Y T
Sbjct: 368 LDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNT 427

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F ++G+L+ A +  ++MV+  V+ DIVSY  L++  C  G+ E A  + +++EK  
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D   + I+I G+C A  +  A      +   G   +++ YN ++  L K G +  A 
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
            +F  ME +D  + +   +N+
Sbjct: 548 LLFRKME-EDGHSPNGCTYNI 567



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P T T+  +++G CK    D A  M   +   G  P + T+NILI G CKA  
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +++   G   + +TY T+++      K ++  E+   M  +    D   Y  
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G  ++A +  E++    ++LDI  YN +I+  C   K++ A+ L   +  +G
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            + D  T+ I+I GLCK G++  A L    M + G   N   YN ++
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 24/209 (11%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+++G+C     D+A  +F  L   G  P++ TYNI+I GLCK G L  A  + +++ 
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554

Query: 73  DSGHAPNAITYTTIMK--------------------CCFR--NRKYKLGLEILSAMKRKG 110
           + GH+PN  TY  +++                    C F       +  L  L+ M + G
Sbjct: 555 EDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAG 614

Query: 111 YTFDGFGYCTVIAAFV--KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
           +  D F + T++  F   +   + +A    + M   G + ++V+YNT+I        +  
Sbjct: 615 HEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQ 674

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCK 197
              +LD+M ++G + +  T +  I GLCK
Sbjct: 675 VPGVLDQMFERGCQPNAVTKSTFISGLCK 703



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 24/194 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG------------- 54
           P   T+NIM+ GLCK      A  +FR +++ G  P   TYNILI+              
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584

Query: 55  ---------LCKAGRLRTARWILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEIL 103
                       A  LR A   L  +  +GH P+  T+TT+++  C   N        + 
Sbjct: 585 IEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLF 644

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
             MK  GY  +   Y TVI   +    + +    ++QM   G Q + V+ +T I+  CK+
Sbjct: 645 KNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQ 704

Query: 164 GKLEAAYLLLDEME 177
               +A LLL +ME
Sbjct: 705 DLHGSAILLLRKME 718


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 157/314 (50%), Gaps = 4/314 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L P    +N +++GLCK ++ D+AL +F+ ++  G  P +VTY+ LI  LC  GR   
Sbjct: 45  GKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSD 104

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++ +    P+  T++ ++    +  K     ++   M ++        Y ++I 
Sbjct: 105 ASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN 164

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA    E MV+     D+V+YNTLI  +CK  ++E    +  EM ++G   
Sbjct: 165 GFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 224

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+ ILI GL +AG+   A+   + M   G   N+  YN ++D L K+GK++ A+ VF
Sbjct: 225 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 284

Query: 244 ESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++        +TY+ M+  +CKA ++     L  +    GV+    A   ++ G    
Sbjct: 285 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 344

Query: 300 GCRREAKKIQSKIR 313
           G + EA  +  +++
Sbjct: 345 GSKEEADALFKEMK 358



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 136/265 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ +++   K      A +++  + K    P +VTY+ LI G C   R
Sbjct: 112 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 171

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      P+ +TY T++K   + ++ + G+E+   M ++G   +   Y  
Sbjct: 172 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 231

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G    A +  ++MV+DGV  +I++YNTL++  CK GKLE A ++ + +++  
Sbjct: 232 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 291

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E   YT+ I+I+G+CKAG ++        ++  G   ++ AYN ++    + G  + A 
Sbjct: 292 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 351

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAK 265
            +F+ M+   +   S   + L +A+
Sbjct: 352 ALFKEMKEDGTLPNSGCYNTLIRAR 376



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 1/233 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ G CK +  +  + +FR + + G V   VTYNILI+GL +AG    A+ I
Sbjct: 189 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 248

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+   G  PN +TY T++    +N K +  + +   ++R       + Y  +I    K
Sbjct: 249 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 308

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++++  D    +   GV+ D+V+YNT+I+ +C++G  E A  L  EM++ G   +   
Sbjct: 309 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 368

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  LI    + G+ + +   ++ M   GF  +      + + L  DG++D + 
Sbjct: 369 YNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLDKSF 420



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 2/247 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG 59
           M+   + P   T++ ++NG C +   D A +MF  +  KH F P++VTYN LIKG CK  
Sbjct: 147 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYK 205

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+     + +E+   G   N +TY  +++  F+     +  EI   M   G   +   Y 
Sbjct: 206 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 265

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++    K G+L++A    E +    ++  I +YN +I   CK GK+E  + L   +  +
Sbjct: 266 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 325

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D   +  +I G C+ G+ + A    + M + G   N   YN ++    +DG  + +
Sbjct: 326 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREAS 385

Query: 240 INVFESM 246
             + + M
Sbjct: 386 AELIKEM 392



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 4/175 (2%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           +++MV  G Q D+V+Y  ++N  CK G  + A+ LL++ME+   E     +  +IDGLCK
Sbjct: 4   IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 63

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
             ++  A    + M   G   N+  Y+ ++  L   G+   A  +   M  +    D FT
Sbjct: 64  YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 123

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +S+++    K  +L  A KL    +K  +        ++++G        EAK++
Sbjct: 124 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 178



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 6/180 (3%)

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           + ++  M  KG   D   Y  V+    K G    A + + +M    ++  ++ YNT+I+ 
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CK   ++ A  L  EME +G   +  T++ LI  LC  G    A   L  M +   + +
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 120

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLL 274
           +  ++ ++D   K+GK+  A  +++ M VK S      TYSS+++  C   RL  A ++ 
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEM-VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 179



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N M++G C+    + A  +F+ +++ G +P    YN LI+   + G    +  +
Sbjct: 329 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 388

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +KE+   G A +A T   +       R  K  L++LS
Sbjct: 389 IKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 425


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 156/306 (50%), Gaps = 4/306 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +  ++ GL +      A  +++ +   G VP++VT + +I GLCKAGR+  A  I K
Sbjct: 139 TVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFK 198

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G APN + Y+ ++    + RK    LE+L+ MK+   T D   Y  +I    K G
Sbjct: 199 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 258

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +  A  + ++M+  G + D+ +YN LI+ +CK G  +AA  + D+M       +  T+ 
Sbjct: 259 DVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYG 318

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            LI GLCK   +  A L+ ++M + G   +   Y+ +VD L K GK++    +F+ ME  
Sbjct: 319 TLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERS 378

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            V +S T + ++ +LCKA R+  A  L  +  K G+     A  +++  L  SG   E +
Sbjct: 379 GVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMP-HPYAYNSIISALIKSGKVNEGQ 437

Query: 307 KIQSKI 312
            +  ++
Sbjct: 438 AVYQEM 443



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP  AT+N +LNGLCK    + A+ + R +  +G  P++VTY  LI GL K  R   A  
Sbjct: 66  TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYK 125

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + KE+   G A + + YT +++   +  K      +   M  +G   D     T+I    
Sbjct: 126 LFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLC 185

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+  A    + M   G+  + V Y+ LI+  CK  K++ A  +L +M+K     D  
Sbjct: 186 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 245

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ ILIDGLCK+G++  AR   + M + G   ++  YN ++    K G  D A  VF+ M
Sbjct: 246 TYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 305

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                  +  TY +++  LCK ++L  AS       + G         ++VDGL  SG
Sbjct: 306 SSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSG 363



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 135/258 (52%), Gaps = 4/258 (1%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           T++ILI GL KAG L  A  + +E   +G   +  TYTTI+    +N+K +  + ++  +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
              G T     Y  ++    K+GRL+EA D + ++V +G   D+V+Y +LI+   K+ + 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
             AY L  EM  +G   D   +T LI GL +AG I  A    + M   G   ++   + +
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +D L K G+I  A+ +F+SME +    +   YS+++H LCKA+++  A ++L    K+  
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 283 RILKSAQKAVVDGLRHSG 300
                    ++DGL  SG
Sbjct: 241 TPDTITYNILIDGLCKSG 258



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 119/241 (49%), Gaps = 2/241 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    ++ +++GLCK R  D AL M   ++K    P+ +TYNILI GLCK+G +  AR
Sbjct: 205 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAAR 264

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+ ++G  P+  TY  ++    +         +   M     + +   Y T+I+  
Sbjct: 265 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGL 324

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +L +A+ Y + M   G   D   Y++L++  CK GKLE   +L DEME+ G   + 
Sbjct: 325 CKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVA-NS 383

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T T LI  LCKA  +  A      + K G   +  AYN I+  L K GK++    V++ 
Sbjct: 384 QTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQE 442

Query: 246 M 246
           M
Sbjct: 443 M 443



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 126/276 (45%), Gaps = 39/276 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++ L KN+    A+ +   +  +G  P + TYN L+ GLCK GRL  A  +L+++
Sbjct: 36  TYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 95

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D+G  P+ +TYT+++                          DG G         K  R 
Sbjct: 96  VDNGCTPDVVTYTSLI--------------------------DGLG---------KKKRS 120

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA    ++M + G+ LD V Y  LI    + GK+  A  +   M  QG   D  T + +
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGLCKAG I  A    + M   G   N   Y+ ++  L K  K+D A+ +   M+    
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             D+ TY+ ++  LCK+  + +A       L++G +
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCK 276


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 166/315 (52%), Gaps = 17/315 (5%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L+ L K+R+   A  + R L++  F P+ VTYN L  G C+      A  IL+++ 
Sbjct: 179 FNSLLDALVKSRHAGKAASLVRALERR-FPPDAVTYNTLADGWCRVKDTSRALDILRQMV 237

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----FDGFGYCTVIAAFVK 127
           +SG AP   TY  I+K  FR+ + +   +    MK++G        D   Y TV+     
Sbjct: 238 ESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGV 297

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L +A    ++M  +G    I +YN LI + CK+G +E A  + D+M ++G+  +  T
Sbjct: 298 AGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVT 357

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LI GLC AG I  A   L+ M + G + N++ YN ++  L ++G I+ A+++FE+M 
Sbjct: 358 YTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMS 417

Query: 248 -----VKDSFTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
                + +  TY+ ++  +   KR   +  A+++++  +  G    +     V++GL  +
Sbjct: 418 KGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRRFMFNRVLNGLMLT 477

Query: 300 GCR---REAKKIQSK 311
           G +   RE  ++Q K
Sbjct: 478 GNQELSRELLRMQEK 492



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 8/202 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-----VPELVTYNILIKGL 55
           M+   + P   T+NI+L G  ++    +A   F  ++K G       P++V+Y  ++ GL
Sbjct: 236 MVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGL 295

Query: 56  CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
             AG+L  AR +  E+   G  P+  TY  +++   +    +  + +   M RKGY  + 
Sbjct: 296 GVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNV 355

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  +I      G++  A   +++M  +G + ++ +YN LI    +EG +E A  L + 
Sbjct: 356 VTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFET 415

Query: 176 MEKQGFEC--DKYTHTILIDGL 195
           M K G EC  ++ T+ I+I  +
Sbjct: 416 MSK-GEECLPNQDTYNIIISAM 436



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 99/211 (46%), Gaps = 6/211 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  +L+GL      D A ++F  + + G  P + TYN LI+  CK G +  A  +
Sbjct: 283 PDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAV 342

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G+ PN +TYT +++      K    +++L  MKR+G   +   Y  +I    +
Sbjct: 343 FDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFE 402

Query: 128 IGRLKEATDYMEQMVTDGVQ--LDIVSYNTLINLYCKEGKLE---AAYLLLDEMEKQGFE 182
            G +++A    E M + G +   +  +YN +I+      + E    A  ++ EM  +G+ 
Sbjct: 403 EGDIEKALHLFETM-SKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYL 461

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
             ++    +++GL   GN + +R  L    K
Sbjct: 462 PRRFMFNRVLNGLMLTGNQELSRELLRMQEK 492



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP  AT+N ++   CK    ++A+ +F  + + G++P +VTY +LI+GLC AG++  A  
Sbjct: 317 TPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMK 376

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-YCTVIAAF 125
           +L ++   G  PN  TY  ++   F     +  L +   M +          Y  +I+A 
Sbjct: 377 LLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAM 436

Query: 126 VKIGRLKE---ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
               R ++   A   + +MV  G       +N ++N     G  E +  LL   EK
Sbjct: 437 FVRKRAEDMAVAARMVVEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRELLRMQEK 492



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+ +++ GLC     D A+++   +++ G  P + TYN+LI  L + G 
Sbjct: 346 MIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGD 405

Query: 61  LRTARWILKELGDSGH-APNAITYTTIMKCCF---RNRKYKLGLEILSAMKRKGYTFDGF 116
           +  A  + + +       PN  TY  I+   F   R     +   ++  M  +GY    F
Sbjct: 406 IEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRRF 465

Query: 117 GYCTVIAAFVKIG 129
            +  V+   +  G
Sbjct: 466 MFNRVLNGLMLTG 478


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 150/310 (48%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++ LCKNR+ ++A+ +F  +  +G  P +VTYN L+ GLC+ GR   A W+
Sbjct: 185 PNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWL 244

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++   G  PN IT+T ++    +  K     E+   M +     D F Y  +I     
Sbjct: 245 LRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCT 304

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL EA      M ++G   + V+Y TLI+ +CK  ++E    +  EM ++G   +  T
Sbjct: 305 YGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTIT 364

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LI G C  G    A+     M       ++  YN ++D L  +G ++ A+ +F+ M 
Sbjct: 365 YTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMR 424

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            ++      TY+ ++  +CK  ++  A  L  S    G++        ++ G    G   
Sbjct: 425 KREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIH 484

Query: 304 EAKKIQSKIR 313
           EA  +  K++
Sbjct: 485 EADALFKKMK 494



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T NI++N +C++     A      + K GF P+LVT+  L+ G C   R+  A 
Sbjct: 113 ISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDAL 172

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TYTT++ C  +NR     +EI + M   G   +   Y ++++  
Sbjct: 173 ALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGL 232

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +IGR  +A   +  M+  G+Q +++++  LI+ + K GK+  A  L   M +     D 
Sbjct: 233 CEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDV 292

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+T LI+GLC  G +  AR     M   G+  N   Y  ++    K  +++    +F  
Sbjct: 293 FTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYE 352

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     V ++ TY+ ++   C   R   A ++ 
Sbjct: 353 MSQKGLVANTITYTVLIQGYCLVGRPDVAQEVF 385



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 139/280 (49%), Gaps = 6/280 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L+ + K +  D  + +F  +Q  G  P L T NI++  +C++ +   A   
Sbjct: 80  PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L ++   G  P+ +T+T+++   C  NR  +  L +   +   G+  +   Y T+I    
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNR-IEDALALFDQIVGMGFRPNVVTYTTLIHCLC 198

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K   L  A +   QM  +G++ ++V+YN+L++  C+ G+   A  LL +M K+G + +  
Sbjct: 199 KNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVI 258

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T T LID   K G I  A+   + M ++    ++  Y  +++ L   G++D A  +F  M
Sbjct: 259 TFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLM 318

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           E      +  TY++++H  CK+KR+   +K+     + G+
Sbjct: 319 ESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGL 358



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 1/247 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF  +++   K      A  +++ + +    P++ TY  LI GLC  GRL  AR
Sbjct: 253 IQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEAR 312

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +  +G+ PN +TYTT++    ++++ + G +I   M +KG   +   Y  +I  +
Sbjct: 313 QMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGY 372

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +GR   A +   QM +     DI +YN L++  C  G +E A ++   M K+  + + 
Sbjct: 373 CLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINI 432

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+TI+I G+CK G ++ A      +   G   N+  Y  ++    + G I  A  +F+ 
Sbjct: 433 VTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKK 492

Query: 246 MEVKDSF 252
           M+ +D F
Sbjct: 493 MK-EDGF 498



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 5/264 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           I+ NGL  N   + AL +F  +     +P +V +  L+  + K  R      + +++   
Sbjct: 53  ILRNGL-HNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQIL 111

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G +P   T   +M C  R+ +       L  M + G+  D   + +++  F    R+++A
Sbjct: 112 GISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDA 171

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
               +Q+V  G + ++V+Y TLI+  CK   L  A  + ++M   G   +  T+  L+ G
Sbjct: 172 LALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSG 231

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKD 250
           LC+ G    A   L  M K G   N+  +  ++D   K GKI  A  +++ M       D
Sbjct: 232 LCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPD 291

Query: 251 SFTYSSMVHNLCKAKRLPSASKLL 274
            FTY+++++ LC   RL  A ++ 
Sbjct: 292 VFTYTALINGLCTYGRLDEARQMF 315


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 152/300 (50%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+N ++N LC       AL++F  ++ HG +    TYN +IKGLC  G 
Sbjct: 406 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 465

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +++   G  P  +TY T++              +L  MK  G   D + Y  
Sbjct: 466 IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 525

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F K G+L+ A+ Y ++MV  G+  + VSY TLI+ + K+GK++ A  LL+ ME+ G
Sbjct: 526 LVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMG 585

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++  +I+GL K      A    + M + G   N+  Y  ++D L ++G+   A 
Sbjct: 586 CNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAF 645

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  ME    + + +TYSS+++ LC+  +   A  LL    + G+   +    +++DG 
Sbjct: 646 KIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGF 705



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 153/312 (49%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+ + +  LC   + + A+ +   ++K G  P + TY  LI GL + G+
Sbjct: 336 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGK 395

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++   G  PN +TY  ++       ++   L+I   M+  G   +   Y  
Sbjct: 396 LEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNE 455

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G +++A    E+M+  G    +V+YNTLIN Y  +G +  A  LLD M++ G
Sbjct: 456 IIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENG 515

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D++T+  L+ G  K G ++ A  + + M + G + N  +Y  ++D   KDGK+D A+
Sbjct: 516 CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIAL 575

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ E ME      +  +Y+++++ L K  R   A K+     + G+         ++DGL
Sbjct: 576 SLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGL 635

Query: 297 RHSGCRREAKKI 308
             +G  + A KI
Sbjct: 636 CRNGRTQFAFKI 647



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 124/239 (51%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG       +NA R+   ++++G  P+  TYN L+ G  K G+L +A + 
Sbjct: 483 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 542

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ + G  PN ++YTT++    ++ K  + L +L  M+  G   +   Y  VI    K
Sbjct: 543 FQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSK 602

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R  EA    ++M   G+  ++++Y TLI+  C+ G+ + A+ +  +MEK+    + YT
Sbjct: 603 ENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 662

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++ LI GLC+ G    A + L+ M + G   +   +  ++D     G+IDHA  +   M
Sbjct: 663 YSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 721



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 137/299 (45%), Gaps = 4/299 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L  L K    + A  +++ +   G  P L+T+N LI  L K G++R A  IL ++  
Sbjct: 209 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 268

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
              +P+  TYT+++    RNR   L   +   M ++G   +   Y T+I      GR+ E
Sbjct: 269 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 328

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A D +E+M+  G++  + +Y   I   C     E A  L+  M+K+G   +  T+T LI 
Sbjct: 329 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 388

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           GL + G ++ A      M K G   N   YN +++ L   G+   A+ +F  ME    + 
Sbjct: 389 GLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 448

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           ++ TY+ ++  LC    +  A  L    LK G          +++G    G    A ++
Sbjct: 449 NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARL 507



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 157/334 (47%), Gaps = 29/334 (8%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   ++  +++G  K+   D AL +   +++ G  P + +YN +I GL K  R  
Sbjct: 549 CG-LNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFS 607

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  I  ++ + G  PN ITYTT++    RN + +   +I   M+++    + + Y ++I
Sbjct: 608 EAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI 667

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               + G+  EA   +++M   G+  D V++ +LI+ +   G+++ A+LLL  M   G +
Sbjct: 668 YGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCK 727

Query: 183 CDKYTHTILIDGL---CKAGNIKGARLH---------------------LEYMNKIGFDS 218
            +  T+++L+ GL   C     K A  H                     L  M++IG + 
Sbjct: 728 PNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEP 787

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            L+ Y+ +V  L + G+   A  + + M+ +    D   Y S++   CK   +  A K+ 
Sbjct: 788 TLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIF 847

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            S    G ++  S  +A++  L  +G   EA+ +
Sbjct: 848 HSIEAKGFQLHLSIYRALICALCKAGQVEEAQAL 881



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 39/339 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN ++N L K      A  +   + ++   P++ TY  LI G C+   
Sbjct: 231 MLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRN 290

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTF-- 113
           L  A  +   +   G  PN++TY+T++       +    L++L  M  KG     YT+  
Sbjct: 291 LDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTL 350

Query: 114 ----------------------------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                                       +   Y  +I+   ++G+L+ A     +M+ +G
Sbjct: 351 PITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEG 410

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  + V+YN LIN  C  G+   A  +   ME  G   +  T+  +I GLC  G+I+ A 
Sbjct: 411 LVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM 470

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
           +  E M K+G    +  YN +++     G +++A  + + M+      D +TY+ +V   
Sbjct: 471 VLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGF 530

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            K  +L SAS      ++ G+     +   ++DG    G
Sbjct: 531 SKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDG 569



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 134/297 (45%), Gaps = 28/297 (9%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++GLC+N  T  A ++F  ++K   +P L TY+ LI GLC+ G+   A 
Sbjct: 621 LLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE 680

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKE+   G AP+ +T+T+++       +      +L  M   G   +   Y  ++   
Sbjct: 681 ILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGL 740

Query: 126 VKIGRLKE------------------------ATDYMEQMVTDGVQLDIVSYNTLINLYC 161
            K   L E                         ++ + +M   G +  + +Y+TL++  C
Sbjct: 741 QKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLC 800

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           ++G+   A  L+ +M+++GF  D+  +  L+   CK   +  A      +   GF  +L 
Sbjct: 801 RKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLS 860

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            Y  ++  L K G+++ A  +F++M  K    D   ++ +V  L K   L    KLL
Sbjct: 861 IYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLL 917



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 4/232 (1%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D   AP       ++K C    + +   + L+ +   G+ F  +   T++    K   ++
Sbjct: 163 DRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVE 222

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM+  G+Q  ++++NTLIN+  K+GK+  A L+L ++ +     D +T+T LI
Sbjct: 223 GARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLI 282

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            G C+  N+  A    + M K G D N   Y+ +++ L  +G++D A+++ E M  K   
Sbjct: 283 LGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIE 342

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
              +TY+  +  LC  +    A +L+    K G R       A++ GL   G
Sbjct: 343 PTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 394



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 24/254 (9%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +++G       D+A  + R +   G  P   TY++L+KGL K   L   +
Sbjct: 691 LAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEK 750

Query: 66  W------------------------ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
                                    +L  + + G  P   TY+T++    R  ++    +
Sbjct: 751 VAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQ 810

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           ++  MK +G+  D   Y +++ A  K   +  A      +   G QL +  Y  LI   C
Sbjct: 811 LVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALC 870

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K G++E A  L D M ++ +  D+   T+L+DGL K G +      L  M    F  N++
Sbjct: 871 KAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQ 930

Query: 222 AYNCIVDRLGKDGK 235
            Y  +   L + GK
Sbjct: 931 TYVILGRELSRIGK 944



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +  +L   CKN   D+AL++F  ++  GF   L  Y  LI  LCKAG++  A+ +
Sbjct: 822 PDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQAL 881

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + +     + I +T ++    +  +  L +++L  M+ K +T +   Y  +     +
Sbjct: 882 FDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSR 941

Query: 128 IGRLKEATDYMEQM 141
           IG+  E+    +++
Sbjct: 942 IGKSIESEPLADKL 955



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
            L+E+   GF    Y+   L+  L K   ++GAR   + M   G   +L  +N +++ L 
Sbjct: 192 FLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILS 251

Query: 232 KDGKIDHA----INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
           K GK+  A      +F+     D FTY+S++   C+ + L  A  +    +K G      
Sbjct: 252 KKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSV 311

Query: 288 AQKAVVDGLRHSGCRREA 305
               +++GL + G   EA
Sbjct: 312 TYSTLINGLCNEGRVDEA 329


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 158/313 (50%), Gaps = 6/313 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   TF+ ++ G C     + A  +FR +      P+  T+NIL+  LCK G 
Sbjct: 234 MIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGN 293

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L+ A+ +L  +   G  PN +TY+++M   C  N+  K    +L+ + + G   +   YC
Sbjct: 294 LKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNK-AKHVLNTISQMGAAPNAHSYC 352

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I  F KI  + EA      M   G+  D V+YN+LI+  CK G++  A+ L+DEM   
Sbjct: 353 TMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDN 412

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   + +T+  LID LCK  ++  A   ++ +   G   ++  +N ++  L K G++ +A
Sbjct: 413 GQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNA 472

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +VF+ +  K    +++TY+ MV+ LCK      A  LL     +G+       + ++  
Sbjct: 473 QDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQA 532

Query: 296 LRHSGCRREAKKI 308
           L H     +A+K+
Sbjct: 533 LFHKDENEKAEKL 545



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 142/278 (51%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFNI+++ LCK      A  M   + K G +P +VTY+ L+ G C   +
Sbjct: 269 MVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQ 328

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L  +   G APNA +Y T++    + +     L + + M+ KG   D   Y +
Sbjct: 329 VNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNS 388

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+  A + +++M  +G   +I +YN LI+  CK   ++ A  L+ +++ QG
Sbjct: 389 LIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQG 448

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D YT  ILI GLCK G +K A+   + +   G+  N   YN +V+ L K+G  D A 
Sbjct: 449 IQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAE 508

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +   M+    + D+ TY +++  L        A KLL
Sbjct: 509 ALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLL 546



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 147/299 (49%), Gaps = 4/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   TFNI++N  C     + A  M   + K G+ P+ +T+N LIKGLC  G+++ A 
Sbjct: 99  ITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEAL 158

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
                +   G   +  +Y T++    +  + +  L++L  +  K    +   Y T+I + 
Sbjct: 159 HFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSL 218

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   + +A +   QM+   +  D+V+++ LI  +C  G+LE A+ L  EM  +    D 
Sbjct: 219 CKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDY 278

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKIDHAINV 242
           YT  IL+D LCK GN+KGA+  L  M K G   N+  Y+ ++D    + +  K  H +N 
Sbjct: 279 YTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNT 338

Query: 243 FESM-EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
              M    ++ +Y +M++  CK K +  A  L       G+   K    +++DGL  SG
Sbjct: 339 ISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSG 397



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 137/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TFN ++ GLC N     AL     +   GF  +  +Y  LI GLCK G  RTA  +
Sbjct: 136 PDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQM 195

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++       N + Y TI+    +++      E+ S M  K  + D   +  +I  F  
Sbjct: 196 LRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCI 255

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L+EA     +MV   +  D  ++N L++  CKEG L+ A  +L  M K+G   +  T
Sbjct: 256 VGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVT 315

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+DG C    +  A+  L  ++++G   N  +Y  +++   K   +D A+++F  M+
Sbjct: 316 YSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQ 375

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            K    D  TY+S++  LCK+ R+  A +L+
Sbjct: 376 FKGIAPDKVTYNSLIDGLCKSGRISYAWELV 406



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 72/135 (53%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++ LCKN + D A+ + + ++  G  P++ T+NILI GLCK GRL+ A+ + ++L
Sbjct: 420 TYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDL 479

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G++ NA TY  ++    +   +     +LS M   G   D   Y T+I A       
Sbjct: 480 LSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDEN 539

Query: 132 KEATDYMEQMVTDGV 146
           ++A   + +M+   V
Sbjct: 540 EKAEKLLREMIARDV 554



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 31/174 (17%)

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G+  DI ++N LIN YC   ++  A+ ++ ++ K G+E D  T   LI GLC  G +K A
Sbjct: 98  GITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEA 157

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA 264
               +++  +GF                                 D F+Y ++++ LCK 
Sbjct: 158 LHFHDHVLALGFH-------------------------------LDQFSYGTLINGLCKI 186

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
               +A ++L       V+I       ++D L       +A ++ S++   KIS
Sbjct: 187 GETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKIS 240


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/244 (36%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF I+++GLCK     +A +    +   G VP +  YN LI G CKAG 
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN 348

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  E+      P+  TY+ ++K      + +    +L  MK+KG+  +   Y T
Sbjct: 349 LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G +++A +   QM   G++ +I++++TLI+ YCK GK+EAA  L  EM  +G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D   +T LIDG  K GN K A RLH E M + G   N+   +C++D L KDG+I  A
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKE-MQEAGLHPNVFTLSCLIDGLCKDGRISDA 527

Query: 240 INVF 243
           I +F
Sbjct: 528 IKLF 531



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 153/319 (47%), Gaps = 4/319 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   T+  +++G C+      A R+F  + +    P +V Y ILI+GLC   R
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESR 243

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + + + +SG  PN  TY T+M    +    K  LE+   M   G   +   +  
Sbjct: 244 ISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI 303

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K   +  A  ++  M + GV  +I  YN LI+ YCK G L  A  L  E+EK  
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T++ILI GLC    ++ A   L+ M K GF  N   YN ++D   K+G ++ AI
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   M  K    +  T+S+++   CKA ++ +A  L    +  G+     A  A++DG 
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 297 RHSGCRREAKKIQSKIRMA 315
              G  +EA ++  +++ A
Sbjct: 484 FKDGNTKEAFRLHKEMQEA 502



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 140/322 (43%), Gaps = 19/322 (5%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMF------RGLQKHGF--------VPELVTYNILIKG 54
           C + FN+ L+ L  +++T N   +        GL +           +P +   N+++ G
Sbjct: 109 CCSVFNV-LSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDG 167

Query: 55  LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           L K GR  T   +  ++   G +PN +TY T++  C R   +     +   M  K     
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
              Y  +I       R+ EA      M   G+  ++ +YNT+++ YCK   ++ A  L  
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQ 287

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           EM   G   +  T  ILIDGLCK   +  AR  L  M   G   N+  YNC++D   K G
Sbjct: 288 EMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAG 347

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
            +  A+++   +E    + D FTYS ++  LC   R+  A  LL    K G         
Sbjct: 348 NLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYN 407

Query: 291 AVVDGLRHSGCRREAKKIQSKI 312
            ++DG    G   +A ++ S++
Sbjct: 408 TLIDGYCKEGNMEKAIEVCSQM 429



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 5/161 (3%)

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            + +VI+A+V   R  +A     QM  D VQ DIV+    ++     G L+    +   +
Sbjct: 699 SWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYI 758

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
             +G + D   +  LI+   K G I  A R  L   N + F   L A  C    L ++GK
Sbjct: 759 RHRGLDTDLCLNNSLINMYSKCGEIGTARRFSLVLPNDVTFMGVLMA--CSHAGLVEEGK 816

Query: 236 IDHAINVFESMEVKDSFT-YSSMVHNLCKAKRLPSASKLLL 275
             H  ++ E   ++   + +  MV  LC+A  L  A + +L
Sbjct: 817 -QHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFIL 856



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 7/167 (4%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++  +++    N+  + AL++FR +Q     P++VT  + +      G L    WI   +
Sbjct: 699 SWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYI 758

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G   +     +++     N   K G EI +A +      +   +  V+ A    G +
Sbjct: 759 RHRGLDTDLCLNNSLI-----NMYSKCG-EIGTARRFSLVLPNDVTFMGVLMACSHAGLV 812

Query: 132 KEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           +E   +   M  D  ++  I  +  +++L C+ G L  AY  + +M 
Sbjct: 813 EEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKMP 859


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 157/350 (44%), Gaps = 39/350 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF+ ++NGLC       AL +   + + G  P L+T N L+ GLC  G++  A  +
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  + ++G  PN +TY  ++K   ++ +  L +E+L  M+ +    D   Y  +I    K
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-------------------------- 161
            G L  A +   +M   G + DI+ Y TLI  +C                          
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 162 ---------KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                    KEGKL  A  L  EM ++G   D  T+T LIDG CK   +  A   L+ M 
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G   N+  +N +++   K   ID  + +F  M     V D+ TY++++   C+  +L 
Sbjct: 380 SKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE 439

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A +L    +   VR    + K ++DGL  +G   +A +I  KI  +K+ 
Sbjct: 440 VAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 148/297 (49%), Gaps = 4/297 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++I+++GLCK+   DNA  +F  ++  GF  +++ Y  LI+G C AGR      +L+++ 
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                P+ + ++ ++ C  +  K +   E+   M ++G + D   Y ++I  F K  +L 
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   ++ MV+ G   +I ++N LIN YCK   ++    L  +M  +G   D  T+  LI
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            G C+ G ++ A+   + M       ++ +Y  ++D L  +G+ + A+ +FE +E     
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            D   Y+ ++H +C A ++  A  L  S    GV+        ++ GL   G   EA
Sbjct: 490 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEA 546



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 147/296 (49%), Gaps = 4/296 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F+ + +    P L+ ++ L   + +  +      + K++   G A N  T + +
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + CC R RK  L    +  + + GY  D   + T+I      GR+ EA + +++MV  G 
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           +  +++ N L+N  C  GK+  A LL+D M + GF+ ++ T+  ++  +CK+G    A  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L  M +     +   Y+ I+D L KDG +D+A N+F  ME+K    D   Y++++   C
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFC 293

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A R    +KLL   +K  +     A  A++D     G  REA+++  ++    IS
Sbjct: 294 YAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS 349



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T +IM+N  C+ R    A      + K G+ P+ VT++ LI GLC  GR+  A  ++  +
Sbjct: 109 TLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRM 168

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + GH P  IT   ++     N K    + ++  M   G+  +   Y  V+    K G+ 
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++LD V Y+ +I+  CK+G L+ A+ L +EME +GF+ D   +T L
Sbjct: 229 ALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTL 288

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I G C AG        L  M K     ++ A++ ++D   K+GK+  A  + + M  +  
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D+ TY+S++   CK  +L  A+ +L
Sbjct: 349 SPDTVTYTSLIDGFCKENQLDKANHML 375



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 138/300 (46%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP    F+ +++   K      A  + + + + G  P+ VTY  LI G CK  +
Sbjct: 308 MIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQ 367

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L  +   G  PN  T+  ++    +      GLE+   M  +G   D   Y T
Sbjct: 368 LDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNT 427

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F ++G+L+ A +  ++MV+  V+ DIVSY  L++  C  G+ E A  + +++EK  
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D   + I+I G+C A  +  A      +   G   +++ YN ++  L K G +  A 
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  ME      +  TY+ ++           ++KL+    + G  +  S  K VVD L
Sbjct: 548 LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDML 607



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 4/234 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P   TFNI++NG CK    D+ L +FR +   G V + VTYN LI+G C+ G+L 
Sbjct: 383 CG---PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE 439

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A+ + +E+      P+ ++Y  ++     N + +  LEI   +++     D   Y  +I
Sbjct: 440 VAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIII 499

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
                  ++ +A D    +   GV+ D+ +YN +I   CK+G L  A LL  +ME+ G  
Sbjct: 500 HGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHS 559

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            +  T+ ILI      G+   +   +E + + GF  +      +VD L  DG++
Sbjct: 560 PNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLS-DGRL 612



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NIM+ GLCK      A  +FR +++ G  P   TYNILI+     G    +  +
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           ++E+   G + +A T   ++      R  K  L++LS
Sbjct: 585 IEEIKRCGFSVDASTVKMVVDMLSDGRLKKSFLDMLS 621


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M++G  K    +   R+   +  HG  P  +TYN+L+ GLC+AGR+     +
Sbjct: 96  PNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSAL 155

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+  TY+ +     RN   K  L +     + G T   +    ++    K
Sbjct: 156 LDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCK 215

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A + ++ +V  G+    V YNTLIN YC+ G+LE A+    +M+ +  + D  T
Sbjct: 216 DGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHIT 275

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+GLCKA  I  A+  L  M   G +  +E +N ++D  G+ G+++    V   M+
Sbjct: 276 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 335

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 +  +Y S+V+  CK  ++P A  +L       V        A++D     G   
Sbjct: 336 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 395

Query: 304 EAKKIQSKIRMAKIS 318
           +A  +  K++   IS
Sbjct: 396 QAFILVEKMKSNGIS 410



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 4/323 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++   L P    +N ++NG C+    + A   F  ++     P+ +TYN LI GLCKA R
Sbjct: 229 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 288

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L E+ D+G  P   T+ T++    R  + +    +LS M+  G   +   Y +
Sbjct: 289 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 348

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K G++ EA   ++ M    V  +   YN +I+ Y + G  + A++L+++M+  G
Sbjct: 349 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 408

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ +LI GLC    I  A   +  ++      +  +YN ++      G ID A+
Sbjct: 409 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 468

Query: 241 NVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + M    +K +  TY  ++  L  A RL     L    +++ V    +    +V+  
Sbjct: 469 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 528

Query: 297 RHSGCRREAKKIQSKIRMAKISH 319
              G   +A+ ++ ++   + +H
Sbjct: 529 SKYGNEIKAEDLRKEMLQKRNNH 551



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 136/280 (48%), Gaps = 4/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T++I+ +GL +N  +   L +F    K+G      T +IL+ GLCK G+
Sbjct: 159 MASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGK 218

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ L ++G  P  + Y T++    +  + +        MK +    D   Y  
Sbjct: 219 VSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 278

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R+  A D + +M  +GV   + ++NTLI+ Y + G+LE  +++L EM++ G
Sbjct: 279 LINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENG 338

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  ++  +++  CK G I  A   L+ M       N + YN I+D   + G  D A 
Sbjct: 339 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 398

Query: 241 NVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLS 276
            + E M+   +  S  TY+ ++  LC   ++  A +++ S
Sbjct: 399 ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINS 438



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T +I+LNGLCK+     A  + + L   G VP  V YN LI G C+ G L  A     ++
Sbjct: 205 TCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM 264

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P+ ITY  ++    +  +     ++L  M+  G       + T+I A+ + G+L
Sbjct: 265 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 324

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++    + +M  +G++ ++VSY +++N +CK GK+  A  +LD+M  +    +   +  +
Sbjct: 325 EKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAI 384

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           ID   + G    A + +E M   G   ++  YN ++  L    +I  A  +  S+     
Sbjct: 385 IDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRL 444

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + D+ +Y++++   C    +  A  L     K G++        ++ GL  +G   E + 
Sbjct: 445 IPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEY 504

Query: 308 IQSKI 312
           +  K+
Sbjct: 505 LYQKM 509



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 132/277 (47%), Gaps = 5/277 (1%)

Query: 29  ALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           A+ M R + + G  P    +YN++I G+ +AGR   A  +  E+ +    PN ITY T++
Sbjct: 46  AVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMI 105

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
               +    + G  +   M   G   +   Y  +++   + GR+ E +  +++M +  + 
Sbjct: 106 DGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 165

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D  +Y+ L +   + G  +A   L  +  K G     YT +IL++GLCK G +  A   
Sbjct: 166 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 225

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
           L+ +   G       YN +++   + G+++ A + F  M+ +    D  TY+++++ LCK
Sbjct: 226 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 285

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           A+R+ +A  LL+    +GV         ++D    +G
Sbjct: 286 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTG 322


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 151/310 (48%), Gaps = 5/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N +++G CK    + A  +F  + K G  P +VT N L+ G+CK GR+  A   
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+   G   NA+TYT +++        +  +E+   M   G + D   Y T+I+   +
Sbjct: 474 FNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQ 533

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L  A+  + +M   G   DIVS+N LIN +C++ KL+ AY +L EME  G + D  T
Sbjct: 534 AGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVT 593

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI    K G+   A   ++ M K G    +  Y  ++     +G +D A+ +F  M 
Sbjct: 594 YNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMS 653

Query: 248 -----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                  ++  Y+ ++++LC+  ++  A  L+      GV+   +   A+  GL+     
Sbjct: 654 STSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWL 713

Query: 303 REAKKIQSKI 312
            +A ++  ++
Sbjct: 714 SKAFELMDRM 723



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 10/314 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFR---GLQKHGFV--PELVTYNILIKGLCKAG 59
           D+ P   TF I++N LCK R  D AL +F    G + +GF+  P+++TYN LI GLCK G
Sbjct: 335 DIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVG 394

Query: 60  RLRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           R      +++ +       PN +TY  ++    +    +   E+   M + G   +    
Sbjct: 395 RQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTL 454

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            T++    K GR+  A ++  +M   G++ + V+Y  LI  +C    +E A  L DEM +
Sbjct: 455 NTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLE 514

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G   D   +  LI GL +AG +  A   L  M + GF  ++ ++N +++   +  K+D 
Sbjct: 515 AGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDE 574

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A  + + ME      D  TY++++ +  K     +A +L+   +K G+        A++ 
Sbjct: 575 AYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIH 634

Query: 295 GLRHSGCRREAKKI 308
               +G   EA KI
Sbjct: 635 AYCLNGNLDEAMKI 648



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 151/332 (45%), Gaps = 18/332 (5%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALR------MFRGLQKHGFVPELVTYNILIKGLCK 57
            +  P + T +I+ + L K      A+       +     +H   P  +    LI  LC+
Sbjct: 223 AEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCR 282

Query: 58  AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
           +GR   A  +L  L   G    A +   ++    R R++K    +L+ MK      +   
Sbjct: 283 SGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVT 342

Query: 118 YCTVIAAFVKIGRLKEATDYMEQM---VTDG--VQLDIVSYNTLINLYCKEGKLEAAYLL 172
           +  +I    K  R+ EA +  E+M    ++G  V+ D+++YNTLI+  CK G+ E    L
Sbjct: 343 FGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGL 402

Query: 173 LDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
           ++ M  Q   C  +  T+  LIDG CKA  I+ AR   + MNK G   N+   N +VD +
Sbjct: 403 VERMRSQP-RCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGM 461

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            K G+I+ A+  F  M+ K    ++ TY++++   C    +  A +L    L++G     
Sbjct: 462 CKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDA 521

Query: 287 SAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
                ++ GL  +G    A  + SK++ A  S
Sbjct: 522 IVYYTLISGLSQAGKLDRASFVLSKMKEAGFS 553



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 137/283 (48%), Gaps = 10/283 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           A+ N +L  L + R       +   +++    P +VT+ ILI  LCK  R+  A  + ++
Sbjct: 306 ASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEK 365

Query: 71  L--GDSGH---APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAA 124
           +  G+S      P+ ITY T++    +  + + GL ++  M+ +     +   Y  +I  
Sbjct: 366 MNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDG 425

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K   ++ A +  +QM  DGV  ++V+ NTL++  CK G++  A    +EM+ +G + +
Sbjct: 426 YCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGN 485

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+T LI   C   NI+ A    + M + G   +   Y  ++  L + GK+D A  V  
Sbjct: 486 AVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLS 545

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            M+      D  +++ +++  C+  +L  A ++L     +G++
Sbjct: 546 KMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIK 588



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 1/196 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P    +  +++GL +    D A  +   +++ GF P++V++N+LI G C+  +
Sbjct: 512 MLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNK 571

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +LKE+ ++G  P+ +TY T++    +   +     ++  M ++G       Y  
Sbjct: 572 LDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGA 631

Query: 121 VIAAFVKIGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I A+   G L EA      M  T  V  + V YN LIN  C++ +++ A  L+D+M+ +
Sbjct: 632 LIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVK 691

Query: 180 GFECDKYTHTILIDGL 195
           G + +  T   +  GL
Sbjct: 692 GVKPNTNTFNAMFKGL 707



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 1/195 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   +FN+++NG C+    D A  M + ++  G  P+ VTYN LI    K G   TA 
Sbjct: 552 FSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAH 611

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAA 124
            ++K++   G  P  +TY  ++     N      ++I   M        +   Y  +I +
Sbjct: 612 RLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINS 671

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             +  ++  A   M+ M   GV+ +  ++N +     ++  L  A+ L+D M +     D
Sbjct: 672 LCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPD 731

Query: 185 KYTHTILIDGLCKAG 199
             T  IL + L   G
Sbjct: 732 YITMEILTEWLSAVG 746


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 157/314 (50%), Gaps = 4/314 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L P    +  +++GLCKN++ D+AL +F+ ++  G  P +VTY+ LI  LC  GR   
Sbjct: 250 GKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSD 309

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++ +    P+  T++ ++    +  K     ++   M ++        Y ++I 
Sbjct: 310 ASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN 369

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA    E MV+     D+VSY+TLI  +CK  +++    L  EM ++G   
Sbjct: 370 GFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVG 429

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+T LI GL +AG+   A+   + M   G   N+  YN ++D L K+GK++ A+ VF
Sbjct: 430 NTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 489

Query: 244 ESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++        +TY+ M+  +CKA ++     L  +    GV+    A   ++ G    
Sbjct: 490 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 549

Query: 300 GCRREAKKIQSKIR 313
           G + EA  +  +++
Sbjct: 550 GSKEEADALFKEMK 563



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 137/265 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ +++   K      A +++  + K    P +VTY+ LI G C   R
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      P+ ++Y+T++K   + ++   G+E+   M ++G   +   Y T
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G    A +  ++MV+DGV  +I++YNTL++  CK GKLE A ++ + +++  
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E   YT+ I+I+G+CKAG ++        ++  G   ++ AYN ++    + G  + A 
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAK 265
            +F+ M+   +   S   + L +A+
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRAR 581



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 147/299 (49%), Gaps = 5/299 (1%)

Query: 18  NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           NGL + +  D+A+ +F  + K    P ++ ++ L+  + K  +      + +++ + G  
Sbjct: 55  NGLSELKL-DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMP 113

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
            N  TY+ ++ C  R  +  L L +L  M + GY  +     +++  +    R+ EA   
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 173

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ++QM   G Q + V++NTLI+      K   A  L+D M  +G + D  T+ ++++GLCK
Sbjct: 174 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCK 233

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
            G+   A + L  M +   +  +  Y  I+D L K+  +D A+N+F+ ME K    +  T
Sbjct: 234 RGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVT 293

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           YSS++  LC   R   AS+LL   ++  +        A++D     G   EA+K+  ++
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 121/247 (48%), Gaps = 2/247 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG 59
           M+   + P   T++ ++NG C +   D A +MF  +  KH F P++V+Y+ LIKG CKA 
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVVSYSTLIKGFCKAK 410

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+     + +E+   G   N +TYTT+++  F+     +  EI   M   G   +   Y 
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 470

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++    K G+L++A    E +    ++  I +YN +I   CK GK+E  + L   +  +
Sbjct: 471 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 530

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D   +  +I G C+ G+ + A    + M + G   N   YN ++    +DG  + +
Sbjct: 531 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREAS 590

Query: 240 INVFESM 246
             + + M
Sbjct: 591 AELIKEM 597



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 1/233 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++ ++ G CK +  D  + +FR + + G V   VTY  LI+GL +AG    A+ I
Sbjct: 394 PDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEI 453

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+   G  PN +TY T++    +N K +  + +   ++R       + Y  +I    K
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++++  D    +   GV+ D+V+YNT+I+ +C++G  E A  L  EM++ G   +   
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  LI    + G+ + +   ++ M   GF  +      + + L  DG++D + 
Sbjct: 574 YNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLDKSF 625



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 147/328 (44%), Gaps = 39/328 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++I++N  C+      AL +   + K G+ P +VT + L+ G C + R+  A  ++ ++
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD--GFG------------ 117
             +G+ PN +T+ T++   F + K    + ++  M  KG   D   +G            
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 118 ---------------------YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
                                Y T+I    K   + +A +  ++M T G++ ++V+Y++L
Sbjct: 238 DLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSL 297

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           I+  C  G+   A  LL +M ++    D +T + LID   K G +  A    + M K   
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK 272
           D ++  Y+ +++      ++D A  +FE M  K    D  +YS+++   CKAKR+    +
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGME 417

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           L     + G+         ++ GL  +G
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIQGLFQAG 445



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ +L+ + K    D  + +   +Q  G      TY+ILI   C+  +L  A  +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ PN +T ++++     +++    + ++  M   GY  +   + T+I     
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +  EA   +++MV  G Q D+V+Y  ++N  CK G  + A++LL++ME+   E     
Sbjct: 199 HNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLI 258

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +IDGLCK  ++  A    + M   G   N+  Y+ ++  L   G+   A  +   M 
Sbjct: 259 YTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D FT+S+++    K  +L  A KL    +K  +        ++++G        
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 304 EAKKI 308
           EAK++
Sbjct: 379 EAKQM 383



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N M++G C+    + A  +F+ +++ G +P    YN LI+   + G    +  +
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 593

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +KE+   G A +A T   +       R  K  L++LS
Sbjct: 594 IKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 630


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T+NI++ G C        L  F  ++++G +P +VTYN LI   CK GR
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LK +   G  PN I+Y  I+    R    K   EIL  M  KG+T D   Y T
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K G   +A     +MV +GV   +V+Y  LIN  CK   L  A    D+M  +G
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN------CIVDRLGKDG 234
              ++ T+T LIDG  + G +  A   L  M + GF  ++  YN      C+++R+    
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERM---- 236

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
             + A+ V + M  K    D  +YS+++   C+   L  A ++    ++ GV        
Sbjct: 237 --EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS 294

Query: 291 AVVDGL 296
           +++ GL
Sbjct: 295 SLIQGL 300



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 141/295 (47%), Gaps = 19/295 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G  +    + A R+   + + GF P +VTYN  I G C   R+  A 
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++E+ + G AP+ ++Y+TI+    R  +     ++   M  KG + D   Y ++I   
Sbjct: 241 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 300

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++ RL EA D  ++M+  G+  D  +Y TLIN YC EG L  A  L DEM  +GF  D 
Sbjct: 301 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDA 360

Query: 186 YTHTILIDGLCKAGNIKGAR---LHLEYMNKIGFD----------SNLEAYNCI--VDRL 230
            T+++LI+GL K    + A+     L Y   +  D          SN+E  + +  +   
Sbjct: 361 VTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGF 420

Query: 231 GKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
              G +  A  VFESM  ++       Y+ ++H  C+   LP A  L    + SG
Sbjct: 421 CMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSG 475



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 146/311 (46%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++N+++NGLC+      A  +   +   GF P+ VTYN L+ G CK G    A 
Sbjct: 76  MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQAL 135

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+  +G +P+ +TYT ++    + R     +E    M+ +G   +   Y T+I  F
Sbjct: 136 VIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGF 195

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L EA   + +M   G    +V+YN  I+ +C   ++E A  ++ EM ++G   D 
Sbjct: 196 SRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDV 255

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +++ +I G C+ G +  A    + M + G   +   Y+ ++  L +  ++  A ++ + 
Sbjct: 256 VSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQE 315

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D FTY+++++  C    L  A  L    +  G          +++GL     
Sbjct: 316 MLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQAR 375

Query: 302 RREAKKIQSKI 312
            REAK++  K+
Sbjct: 376 TREAKRLLFKL 386



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 139/277 (50%), Gaps = 4/277 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP   T+N +LNG CK      AL +   + ++G  P +VTY  LI  +CKA  L  A 
Sbjct: 111 FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAM 170

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++   G  PN  TYTT++    R         IL+ M   G++     Y   I   
Sbjct: 171 EFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGH 230

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             + R++EA   +++MV  G+  D+VSY+T+I+ +C++G+L+ A+ +  EM ++G   D 
Sbjct: 231 CVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDA 290

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LI GLC+   +  A    + M  +G   +   Y  +++    +G ++ A+++ + 
Sbjct: 291 VTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDE 350

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           M  K    D+ TYS +++ L K  R   A +LL   +
Sbjct: 351 MIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLI 387



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 15/249 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   +++ +++G C+    D A +M + + + G  P+ VTY+ LI+GLC+  R
Sbjct: 246 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRR 305

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + +E+ D G  P+  TYTT++            L +   M  KG+  D   Y  
Sbjct: 306 LTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSV 365

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI----NL-----------YCKEGK 165
           +I    K  R +EA   + +++ +      V+Y+TLI    N+           +C +G 
Sbjct: 366 LINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGL 425

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           +  A  + + M ++  +  +  + ++I G C+ GN+  A    + M   GF  +      
Sbjct: 426 MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVIT 485

Query: 226 IVDRLGKDG 234
           ++  L K+G
Sbjct: 486 LIKALFKEG 494


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 162/311 (52%), Gaps = 8/311 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   TFN +++G+CK    ++A    RGL  K G  P++ TY   ++GLCKAGR++ A
Sbjct: 275 VPPTVVTFNTLMSGMCKASDLNSA-NALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDA 333

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + +E+ + G  PN + +TT++    +      GLE+   M  +G   D   Y  +   
Sbjct: 334 VEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANG 393

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             ++  LK A D +E+M  +G++ D V+Y TLI+ +CKEG+L+ A  +  EM  +G   D
Sbjct: 394 LCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALD 453

Query: 185 KYTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + T+T LI GL K+G ++   R+  E M + G + +   Y  ++D   K+  +     + 
Sbjct: 454 EVTYTTLISGLSKSGRSVDSERILCEMM-EAGLEPDNTTYTMVIDAFCKNSDVKTGFKLL 512

Query: 244 ESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M+ K       TY+ +++  C   ++ +A  LL + L  GV         ++DG    
Sbjct: 513 KEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKH 572

Query: 300 GCRREAKKIQS 310
           G  R+A++++S
Sbjct: 573 GKVRDAEELKS 583



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 15/288 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    FN+++  + ++    +A  MF  + + G  P +VT+N L+ G+CKA  L +A 
Sbjct: 240 VPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSAN 299

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +  +G AP+  TY   M+   +  + +  +E+   M+ +G   +   + T+I A 
Sbjct: 300 ALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAH 359

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +    +   +M T G++ D+V+YN L N  C+   L+AA  +++EM   G + DK
Sbjct: 360 CKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDK 419

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFE 244
            T+T LIDG CK G +  A    + M+  G   +   Y  ++  L K G+ +D    + E
Sbjct: 420 VTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCE 479

Query: 245 SMEV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            ME     D+ TY+ ++   CK            S +K+G ++LK  Q
Sbjct: 480 MMEAGLEPDNTTYTMVIDAFCKN-----------SDVKTGFKLLKEMQ 516



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 128/261 (49%), Gaps = 4/261 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G  PE   +N+L++ + ++G+L +AR +  E+   G  P  +T+ T+M    +       
Sbjct: 239 GVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSA 298

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             +   M + G   D + Y   +    K GR+++A +  E+M   GV  + V + TLI+ 
Sbjct: 299 NALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDA 358

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CKEG + A   L  EM  +G + D   +  L +GLC+  ++K A   +E M   G   +
Sbjct: 359 HCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPD 418

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G++D A+ + + M  +    D  TY++++  L K+ R   + ++L 
Sbjct: 419 KVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILC 478

Query: 276 SCLKSGVRILKSAQKAVVDGL 296
             +++G+    +    V+D  
Sbjct: 479 EMMEAGLEPDNTTYTMVIDAF 499



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++  + EA  +  Q++  GV  +   +N L+    + GKL +A  + DEM ++G      
Sbjct: 221 RLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVV 280

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   L+ G+CKA ++  A      M K G   ++  Y   +  L K G+I  A+ +FE M
Sbjct: 281 TFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEM 340

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             +    ++  +++++   CK   + +  +L       G++    A  A+ +GL
Sbjct: 341 RERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGL 394



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 3/127 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+ ++++  CKN       ++ + +Q  G  P +VTYN+++ G C  G+
Sbjct: 480 MMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQ 539

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +L  + + G  P+ ITY  ++    ++ K +   E+ SA   KG   D   Y +
Sbjct: 540 MKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEELKSA---KGMVSDFGLYTS 596

Query: 121 VIAAFVK 127
           +I  FVK
Sbjct: 597 LINEFVK 603


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 157/314 (50%), Gaps = 4/314 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L P    +N +++GLCK ++ D+AL +F+ ++  G  P +VTY+ LI  LC  GR   
Sbjct: 250 GKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSD 309

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++ +    P+  T++ ++    +  K     ++   M ++        Y ++I 
Sbjct: 310 ASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN 369

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA    E MV+     D+V+YNTLI  +CK  ++E    +  EM ++G   
Sbjct: 370 GFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 429

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+ ILI GL +AG+   A+   + M   G   N+  YN ++D L K+GK++ A+ VF
Sbjct: 430 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 489

Query: 244 ESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++        +TY+ M+  +CKA ++     L  +    GV+    A   ++ G    
Sbjct: 490 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 549

Query: 300 GCRREAKKIQSKIR 313
           G + EA  +  +++
Sbjct: 550 GSKEEADALFKEMK 563



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 136/265 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ +++   K      A +++  + K    P +VTY+ LI G C   R
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      P+ +TY T++K   + ++ + G+E+   M ++G   +   Y  
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G    A +  ++MV+DGV  +I++YNTL++  CK GKLE A ++ + +++  
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E   YT+ I+I+G+CKAG ++        ++  G   ++ AYN ++    + G  + A 
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAK 265
            +F+ M+   +   S   + L +A+
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRAR 581



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 146/299 (48%), Gaps = 5/299 (1%)

Query: 18  NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           NGL + +  D+A+ +F  + K    P ++ ++ L+  + K  +      + +++ + G  
Sbjct: 55  NGLSELKL-DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 113

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
            N  TY+ ++ C  R  +  L L +L  M + GY  +     +++  +    R+ EA   
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 173

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ++QM   G Q + V++NTLI+      K   A  L+D M  +G + D  T+ ++++GLCK
Sbjct: 174 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 233

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
            G+   A   L  M +   +  +  YN I+D L K   +D A+N+F+ ME K    +  T
Sbjct: 234 RGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVT 293

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           YSS++  LC   R   AS+LL   ++  +        A++D     G   EA+K+  ++
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 1/233 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ G CK +  +  + +FR + + G V   VTYNILI+GL +AG    A+ I
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+   G  PN +TY T++    +N K +  + +   ++R       + Y  +I    K
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++++  D    +   GV+ D+V+YNT+I+ +C++G  E A  L  EM++ G   +   
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  LI    + G+ + +   ++ M   GF  +      + + L  DG++D + 
Sbjct: 574 YNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLDKSF 625



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 132/268 (49%), Gaps = 6/268 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++I++N  C+      AL +   + K G+ P +VT + L+ G C + R+  A  ++ ++
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G+ PN +T+ T++   F + K    + ++  M  KG   D   Y  V+    K G  
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++  ++ YNT+I+  CK   ++ A  L  EME +G   +  T++ L
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 297

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           I  LC  G    A   L  M +   + ++  ++ ++D   K+GK+  A  +++ M VK S
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM-VKRS 356

Query: 252 F-----TYSSMVHNLCKAKRLPSASKLL 274
                 TYSS+++  C   RL  A ++ 
Sbjct: 357 IDPSIVTYSSLINGFCMHDRLDEAKQMF 384



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 2/247 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG 59
           M+   + P   T++ ++NG C +   D A +MF  +  KH F P++VTYN LIKG CK  
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYK 410

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+     + +E+   G   N +TY  +++  F+     +  EI   M   G   +   Y 
Sbjct: 411 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 470

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++    K G+L++A    E +    ++  I +YN +I   CK GK+E  + L   +  +
Sbjct: 471 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 530

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D   +  +I G C+ G+ + A    + M + G   N   YN ++    +DG  + +
Sbjct: 531 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREAS 590

Query: 240 INVFESM 246
             + + M
Sbjct: 591 AELIKEM 597



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 139/305 (45%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ +L+ + K    D  + +   +Q  G      TY+ILI   C+  +L  A  +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ PN +T ++++     +++    + ++  M   GY  +   + T+I     
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +  EA   +++MV  G Q D+V+Y  ++N  CK G  + A+ LL++ME+   E     
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +IDGLCK  ++  A    + M   G   N+  Y+ ++  L   G+   A  +   M 
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D FT+S+++    K  +L  A KL    +K  +        ++++G        
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 304 EAKKI 308
           EAK++
Sbjct: 379 EAKQM 383



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N M++G C+    + A  +F+ +++ G +P    YN LI+   + G    +  +
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 593

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +KE+   G A +A T   +       R  K  L++LS
Sbjct: 594 IKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 630


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 152/310 (49%), Gaps = 6/310 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N+M++ LCK    +N+ R+F  +++ G  P++VTYN LI G  K G 
Sbjct: 221 MIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGS 280

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     +  E+ D G  P+ ITY  ++ C  +  K     E  S MK  G   +   Y T
Sbjct: 281 LEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYST 340

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I AF K G ++ A   +  M   G+  +  +Y +LI+  CK G L  A+ LL++M + G
Sbjct: 341 LIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAG 400

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T L+DGLCKAG +  A      M K G   N + Y  +V    K  +++ A+
Sbjct: 401 VKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAM 460

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKAVVDG 295
            + + M       D   Y S++   C  ++L   +KL+L  +KS G+         ++D 
Sbjct: 461 KILKQMTECNIKPDLILYGSIIWGHCSQRKL-EETKLILEEMKSRGISANPVISTTIIDA 519

Query: 296 LRHSGCRREA 305
              +G   +A
Sbjct: 520 YFKAGKSSDA 529



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 145/272 (53%), Gaps = 6/272 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   + N +L+ L K+       + F  +   G  P + TYN++I  LCK G L  +R +
Sbjct: 193 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 252

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ + G +P+ +TY +++    +    +    + + MK  G   D   Y  +I  + K
Sbjct: 253 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCK 312

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A +Y  +M  +G++ ++V+Y+TLI+ +CKEG ++ A  LL +M + G   +++T
Sbjct: 313 FEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFT 372

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LID  CKAGN+  A   L  M + G   N+  Y  ++D L K G++  A  VF SM 
Sbjct: 373 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM- 431

Query: 248 VKDSFT-----YSSMVHNLCKAKRLPSASKLL 274
           +KD  +     Y+++VH   KA+R+  A K+L
Sbjct: 432 LKDGISPNQQVYTALVHGYIKAERMEDAMKIL 463



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 139/307 (45%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++  CK      A ++   + + G    +VTY  L+ GLCKAGR+  A 
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 425

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +   G +PN   YT ++    +  + +  ++IL  M       D   Y ++I   
Sbjct: 426 EVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGH 485

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               +L+E    +E+M + G+  + V   T+I+ Y K GK   A     EM+  G E   
Sbjct: 486 CSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATI 545

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ +LIDGLC+AG ++ A  +   M  +G   N+  Y  ++D L  +  I+ A  +F+ 
Sbjct: 546 VTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDE 605

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ +    D   +++++    K   L  A  L+    +  +        ++V G    G 
Sbjct: 606 MQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGE 665

Query: 302 RREAKKI 308
             +A+K 
Sbjct: 666 LHQARKF 672



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 119/246 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P    +  +++G  K    ++A+++ + + +    P+L+ Y  +I G C   +
Sbjct: 431 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRK 490

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L   + IL+E+   G + N +  TTI+   F+  K    L     M+  G       YC 
Sbjct: 491 LEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCV 550

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G ++ A DY  +M++ G+Q ++  Y +LI+  C    +E+A  L DEM+ +G
Sbjct: 551 LIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRG 610

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D    T LIDG  K GN++ A + +  M ++  + +L  Y  +V    + G++  A 
Sbjct: 611 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 670

Query: 241 NVFESM 246
             F  M
Sbjct: 671 KFFNEM 676



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 2/176 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ ++++GLC+    + A+  F  +   G  P +  Y  LI GLC    + +A+ +  E
Sbjct: 546 VTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDE 605

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+   +T ++    ++   +  L ++S M      FD   Y ++++ F + G 
Sbjct: 606 MQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGE 665

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG--FECD 184
           L +A  +  +M+  G+  + V    L+  Y K G+L+ A  L +EME+    FE D
Sbjct: 666 LHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYSFEFD 721



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 5/203 (2%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           + +AL  F+ +Q  G    +VTY +LI GLC+AG +  A      +   G  PN   YT+
Sbjct: 526 SSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTS 585

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++     N   +   ++   M+ +G T D   +  +I   +K G L+EA   + +M    
Sbjct: 586 LIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELA 645

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++ D+  Y +L++ + + G+L  A    +EM ++G   ++     L+    K G +  A 
Sbjct: 646 IEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAI 705

Query: 206 LHLEYMNKIG----FDSNLEAYN 224
                M ++     FD+ L AYN
Sbjct: 706 ELKNEMERMAYSFEFDAQL-AYN 727



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/114 (21%), Positives = 51/114 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C  +TP    F  +++G  K+     AL +   + +     +L  Y  L+ G  + G 
Sbjct: 606 MQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGE 665

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           L  AR    E+ + G  P  +    +++  ++  +    +E+ + M+R  Y+F+
Sbjct: 666 LHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYSFE 719


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 144/281 (51%), Gaps = 5/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NG CK    ++A+ +   ++     P   TYN LIKG CK+  +  A 
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAM 447

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++ +    P+ +TY +++    R+  +     +LS M  +G   D + Y ++I + 
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R++EA D  + +   GV  ++V Y  LI+ YCK GK++ A+L+L++M  +    + 
Sbjct: 508 CKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS 567

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   LI GLC  G +K A L  E M KIG    +     ++ RL KDG  DHA + F+ 
Sbjct: 568 LTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQ 627

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M       D+ TY++ +   C+  RL  A  ++    ++GV
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGV 668



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 5/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  ++ G C+ +  D+A ++F  +   G     V Y  LI GLC A R+  A 
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++ D    P   TYT ++K    + +    L ++  M+  G   +   Y  +I + 
Sbjct: 309 DLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               + ++A + + QM+  G+  ++++YN LIN YCK G +E A  +++ ME +    + 
Sbjct: 369 CSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNT 428

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G CK+ N+  A   L  M +     ++  YN ++D   + G  D A  +   
Sbjct: 429 RTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V D +TY+SM+ +LCK+KR+  A  L  S  + GV        A++DG   +G 
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547

Query: 302 RREAKKIQSKI 312
             EA  +  K+
Sbjct: 548 VDEAHLMLEKM 558



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 4/256 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N +LN L +    D   +++  + +    P + TYN ++ G CK G +  A   + ++ 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           ++G  P+  TYT+++    + +      ++ + M  KG   +   Y  +I       R+ 
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D   +M  D     + +Y  LI   C   +   A  L+ EME+ G + + +T+T+LI
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           D LC     + AR  L  M + G   N+  YN +++   K G I+ A++V E ME +   
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425

Query: 250 -DSFTYSSMVHNLCKA 264
            ++ TY+ ++   CK+
Sbjct: 426 PNTRTYNELIKGYCKS 441



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 23/292 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++G CK    D A  M   +     +P  +T+N LI GLC  G+L+ A 
Sbjct: 528 VNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEAT 587

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++   G  P   T T ++    ++  +         M   G   D   Y T I  +
Sbjct: 588 LLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GRL +A D M +M  +GV  D+ +Y++LI  Y   G+   A+ +L  M   G E  +
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707

Query: 186 YTHTILIDGLC--KAGNIKGARLHLEYM-NKIGFDS---------------NLEAYNCIV 227
           +T   LI  L   K G  KG+   L  M N + FD+               N ++Y  ++
Sbjct: 708 HTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767

Query: 228 DRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL-----CKAKRLPSASKLL 274
             + + G +  A  VF+ M+  +  + S +V N      CK K+   A+K++
Sbjct: 768 LGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVV 819



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 119/265 (44%), Gaps = 19/265 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P + TFN +++GLC +     A  +   + K G  P + T  ILI  L K G 
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD 617

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A    +++  SG  P+A TYTT ++   R  +     ++++ M+  G + D F Y +
Sbjct: 618 FDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSS 677

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN--LYCKEGK------------- 165
           +I  +  +G+   A D +++M   G +    ++ +LI   L  K GK             
Sbjct: 678 LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSN 737

Query: 166 ---LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK-IGFDSNLE 221
               +    LL++M +     +  ++  LI G+C+ GN++ A    ++M +  G   +  
Sbjct: 738 MMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSEL 797

Query: 222 AYNCIVDRLGKDGKIDHAINVFESM 246
            +N ++    K  K + A  V + M
Sbjct: 798 VFNALLSCCCKLKKHNEAAKVVDDM 822



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 123/280 (43%), Gaps = 20/280 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+   +   C+     +A  M   ++++G  P+L TY+ LIKG    G+
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-----------------CCFRNR-KYKLGLEI 102
              A  +LK + D+G  P+  T+ +++K                 C   N  ++   +E+
Sbjct: 688 TNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVEL 747

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV-TDGVQLDIVSYNTLINLYC 161
           L  M     T +   Y  +I    ++G L+ A    + M   +G+    + +N L++  C
Sbjct: 748 LEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCC 807

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K  K   A  ++D+M   G      +  +LI GL K G  +      + + + G+  +  
Sbjct: 808 KLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDEL 867

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL 261
           A+  I+D +GK G ++    +F  ME K+   +SS  ++L
Sbjct: 868 AWKIIIDGVGKQGLVEAFYELFNVME-KNGCKFSSQTYSL 906



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 39/275 (14%)

Query: 48  YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
           YN L+  L + G +   + +  E+ +    PN  TY  ++                    
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVN------------------- 226

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
                    GYC       K+G ++EA  Y+ ++V  G+  D  +Y +LI  YC+   L+
Sbjct: 227 ---------GYC-------KLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLD 270

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
           +A+ + +EM  +G   ++  +T LI GLC A  I  A      M        +  Y  ++
Sbjct: 271 SAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLI 330

Query: 228 DRLGKDGKIDHAINVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             L    +   A+N+ + ME   +K +  TY+ ++ +LC   +   A +LL   L+ G+ 
Sbjct: 331 KSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLM 390

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
                  A+++G    G   +A  +   +   K+S
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG-DSGHAPNAITYTT 85
           D  + +   + +H   P   +Y  LI G+C+ G LR A  +   +  + G +P+ + +  
Sbjct: 742 DTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNA 801

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV-IAAFVKIGRLKEATDYMEQMVTD 144
           ++ CC + +K+    +++  M   G+       C V I    K G  +  T   + ++  
Sbjct: 802 LLSCCCKLKKHNEAAKVVDDMICVGH-LPQLESCKVLICGLYKKGEKERGTSVFQNLLQC 860

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
           G   D +++  +I+   K+G +EA Y L + MEK G +    T+++LI+G
Sbjct: 861 GYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           +L I  YNTL+N   + G ++    +  EM +     + YT+  +++G CK GN++ A  
Sbjct: 180 KLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQ 239

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
           ++  + + G D +   Y  ++    +   +D A  VF  M +K    +   Y+ ++H LC
Sbjct: 240 YVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLC 299

Query: 263 KAKRLPSASKLLL 275
            A+R+  A  L +
Sbjct: 300 VARRIDEAMDLFV 312


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M++G  K    +   R+   +  HG  P  +TYN+L+ GLC+AGR+     +
Sbjct: 233 PNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSAL 292

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+  TY+ +     RN   K  L +     + G T   +    ++    K
Sbjct: 293 LDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCK 352

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A + ++ +V  G+    V YNTLIN YC+ G+LE A+    +M+ +  + D  T
Sbjct: 353 DGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHIT 412

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+GLCKA  I  A+  L  M   G +  +E +N ++D  G+ G+++    V   M+
Sbjct: 413 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 472

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 +  +Y S+V+  CK  ++P A  +L       V        A++D     G   
Sbjct: 473 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 532

Query: 304 EAKKIQSKIRMAKIS 318
           +A  +  K++   IS
Sbjct: 533 QAFILVEKMKSNGIS 547



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 4/323 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++   L P    +N ++NG C+    + A   F  ++     P+ +TYN LI GLCKA R
Sbjct: 366 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 425

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L E+ D+G  P   T+ T++    R  + +    +LS M+  G   +   Y +
Sbjct: 426 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 485

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K G++ EA   ++ M    V  +   YN +I+ Y + G  + A++L+++M+  G
Sbjct: 486 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 545

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ +LI GLC    I  A   +  ++      +  +YN ++      G ID A+
Sbjct: 546 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 605

Query: 241 NVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + M    +K +  TY  ++  L  A RL     L    +++ V    +    +V+  
Sbjct: 606 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 665

Query: 297 RHSGCRREAKKIQSKIRMAKISH 319
              G   +A+ ++ ++   + +H
Sbjct: 666 SKYGNEIKAEDLRKEMLQKRNNH 688



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 136/280 (48%), Gaps = 4/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T++I+ +GL +N  +   L +F    K+G      T +IL+ GLCK G+
Sbjct: 296 MASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGK 355

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ L ++G  P  + Y T++    +  + +        MK +    D   Y  
Sbjct: 356 VSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 415

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R+  A D + +M  +GV   + ++NTLI+ Y + G+LE  +++L EM++ G
Sbjct: 416 LINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENG 475

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  ++  +++  CK G I  A   L+ M       N + YN I+D   + G  D A 
Sbjct: 476 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 535

Query: 241 NVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLS 276
            + E M+   +  S  TY+ ++  LC   ++  A +++ S
Sbjct: 536 ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINS 575



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T +I+LNGLCK+     A  + + L   G VP  V YN LI G C+ G L  A     ++
Sbjct: 342 TCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM 401

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P+ ITY  ++    +  +     ++L  M+  G       + T+I A+ + G+L
Sbjct: 402 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 461

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++    + +M  +G++ ++VSY +++N +CK GK+  A  +LD+M  +    +   +  +
Sbjct: 462 EKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAI 521

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           ID   + G    A + +E M   G   ++  YN ++  L    +I  A  +  S+     
Sbjct: 522 IDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRL 581

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + D+ +Y++++   C    +  A  L     K G++        ++ GL  +G   E + 
Sbjct: 582 IPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEY 641

Query: 308 IQSKI 312
           +  K+
Sbjct: 642 LYQKM 646



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 132/277 (47%), Gaps = 5/277 (1%)

Query: 29  ALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           A+ M R + + G  P    +YN++I G+ +AGR   A  +  E+ +    PN ITY T++
Sbjct: 183 AVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMI 242

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
               +    + G  +   M   G   +   Y  +++   + GR+ E +  +++M +  + 
Sbjct: 243 DGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 302

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D  +Y+ L +   + G  +A   L  +  K G     YT +IL++GLCK G +  A   
Sbjct: 303 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 362

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
           L+ +   G       YN +++   + G+++ A + F  M+ +    D  TY+++++ LCK
Sbjct: 363 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 422

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           A+R+ +A  LL+    +GV         ++D    +G
Sbjct: 423 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTG 459


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M++G  K    +   R+   +  HG  P  +TYN+L+ GLC+AGR+     +
Sbjct: 48  PNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSAL 107

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+  TY+ +     RN   K  L +     + G T   +    ++    K
Sbjct: 108 LDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCK 167

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A + ++ +V  G+    V YNTLIN YC+ G+LE A+    +M+ +  + D  T
Sbjct: 168 DGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHIT 227

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+GLCKA  I  A+  L  M   G +  +E +N ++D  G+ G+++    V   M+
Sbjct: 228 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 287

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 +  +Y S+V+  CK  ++P A  +L       V        A++D     G   
Sbjct: 288 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 347

Query: 304 EAKKIQSKIRMAKIS 318
           +A  +  K++   IS
Sbjct: 348 QAFILVEKMKSNGIS 362



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 4/323 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++   L P    +N ++NG C+    + A   F  ++     P+ +TYN LI GLCKA R
Sbjct: 181 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 240

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L E+ D+G  P   T+ T++    R  + +    +LS M+  G   +   Y +
Sbjct: 241 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 300

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K G++ EA   ++ M    V  +   YN +I+ Y + G  + A++L+++M+  G
Sbjct: 301 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 360

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ +LI GLC    I  A   +  ++      +  +YN ++      G ID A+
Sbjct: 361 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 420

Query: 241 NVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + M    +K +  TY  ++  L  A RL     L    +++ V    +    +V+  
Sbjct: 421 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 480

Query: 297 RHSGCRREAKKIQSKIRMAKISH 319
              G   +A+ ++ ++   + +H
Sbjct: 481 SKYGNEIKAEDLRKEMLQKRNNH 503



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 6/292 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T++I+ +GL +N  +   L +F    K+G      T +IL+ GLCK G+
Sbjct: 111 MASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGK 170

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ L ++G  P  + Y T++    +  + +        MK +    D   Y  
Sbjct: 171 VSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 230

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R+  A D + +M  +GV   + ++NTLI+ Y + G+LE  +++L EM++ G
Sbjct: 231 LINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENG 290

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  ++  +++  CK G I  A   L+ M       N + YN I+D   + G  D A 
Sbjct: 291 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 350

Query: 241 NVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
            + E M+   +  S  TY+ ++  LC   ++  A +++ S   S  R++  A
Sbjct: 351 ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSL--SNHRLIPDA 400



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T +I+LNGLCK+     A  + + L   G VP  V YN LI G C+ G L  A     ++
Sbjct: 157 TCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM 216

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P+ ITY  ++    +  +     ++L  M+  G       + T+I A+ + G+L
Sbjct: 217 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 276

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++    + +M  +G++ ++VSY +++N +CK GK+  A  +LD+M  +    +   +  +
Sbjct: 277 EKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAI 336

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           ID   + G    A + +E M   G   ++  YN ++  L    +I  A  +  S+     
Sbjct: 337 IDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRL 396

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + D+ +Y++++   C    +  A  L     K G++        ++ GL  +G   E + 
Sbjct: 397 IPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEY 456

Query: 308 IQSKI 312
           +  K+
Sbjct: 457 LYQKM 461



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 130/274 (47%), Gaps = 5/274 (1%)

Query: 32  MFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
           M R + + G  P    +YN++I G+ +AGR   A  +  E+ +    PN ITY T++   
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 60

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +    + G  +   M   G   +   Y  +++   + GR+ E +  +++M +  +  D 
Sbjct: 61  IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 120

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y+ L +   + G  +A   L  +  K G     YT +IL++GLCK G +  A   L+ 
Sbjct: 121 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 180

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           +   G       YN +++   + G+++ A + F  M+ +    D  TY+++++ LCKA+R
Sbjct: 181 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 240

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           + +A  LL+    +GV         ++D    +G
Sbjct: 241 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTG 274


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 159/350 (45%), Gaps = 39/350 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF+ ++NGLC       AL +   + + G  P+L+T N L+ GLC +G+   A  +
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++ + G  PNA+TY  ++    ++ +  L +E+L  M+ +    D   Y  +I    K
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-------------------------- 161
            G L  A +   +M   G+  +I++YN LI  +C                          
Sbjct: 276 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 335

Query: 162 ---------KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                    KEGKL  A  L  EM  +G   D  T+T LIDG CK  ++  A   ++ M 
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G D N+  +N +++   K  +ID  + +F  M     V D+ TY++++   C+  +L 
Sbjct: 396 SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN 455

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A +L    +   V       K ++DGL  +G   +A +I  KI  +K+ 
Sbjct: 456 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKME 505



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 148/305 (48%), Gaps = 4/305 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++I+++GLCK+   DNA  +F  ++  G    ++TYNILI G C AGR      +L+++ 
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                PN +T++ ++    +  K +   E+   M  +G   D   Y ++I  F K   L 
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   ++ MV+ G   +I ++N LIN YCK  +++    L  +M  +G   D  T+  LI
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            G C+ G +  A+   + M       N+  Y  ++D L  +G+ + A+ +FE +E     
Sbjct: 446 QGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKME 505

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D   Y+ ++H +C A ++  A  L  S    GV+        ++ GL   G   EA+ +
Sbjct: 506 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELL 565

Query: 309 QSKIR 313
             K+ 
Sbjct: 566 FRKME 570



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +T    T+NI++ G C     D+  ++ R + K    P +VT+++LI    K G+LR A 
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+   G AP+ ITYT+++    +        +++  M  KG   +   +  +I  +
Sbjct: 354 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 413

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ +  +   +M   GV  D V+YNTLI  +C+ GKL  A  L  EM  +    + 
Sbjct: 414 CKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNI 473

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ IL+DGLC  G  + A    E + K   + ++  YN I+  +    K+D A ++F S
Sbjct: 474 VTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS 533

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           + +K       TY+ M+  LCK   L  A  L 
Sbjct: 534 LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 115/236 (48%), Gaps = 1/236 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFNI++NG CK    D+ L +FR +   G V + VTYN LI+G C+ G+
Sbjct: 394 MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 453

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + +E+      PN +TY  ++     N + +  LEI   +++     D   Y  
Sbjct: 454 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I       ++ +A D    +   GV+  + +YN +I   CK+G L  A LL  +ME+ G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
              D +T+ ILI      G+   +   +E + + GF  +      ++D L  DG++
Sbjct: 574 HAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLS-DGRL 628



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 142/291 (48%), Gaps = 4/291 (1%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
            D+A+ +FR +     +P ++ ++ L   + K  +      + K++   G A N  T + 
Sbjct: 69  ADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSI 128

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++ C  R RK  L    +  + + GY  +   + T+I      GR+ EA + +++MV  G
Sbjct: 129 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 188

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            + D+++ NTL+N  C  GK   A LL+D+M + G + +  T+  +++ +CK+G    A 
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 248

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
             L  M +     +   Y+ I+D L K G +D+A N+F  ME+K    +  TY+ ++   
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGF 308

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           C A R    +KLL   +K  +         ++D     G  REA+++  ++
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+++++   K      A  + + +   G  P+ +TY  LI G CK   
Sbjct: 324 MIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENH 383

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++  +   G  PN  T+  ++    +  +   GLE+   M  +G   D   Y T
Sbjct: 384 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 443

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F ++G+L  A +  ++MV+  V  +IV+Y  L++  C  G+ E A  + +++EK  
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D   + I+I G+C A  +  A      +   G    ++ YN ++  L K G +  A 
Sbjct: 504 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAE 563

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  ME      D +TY+ ++           + KL+    + G  +  S  K V+D L
Sbjct: 564 LLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 623



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 6/301 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    F+ + + + K +  D  L + + ++  G    L T +I+I   C+  +
Sbjct: 79  MIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRK 138

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A   + ++   G+ PN IT++T++   C   R  +  LE++  M   G+  D     
Sbjct: 139 LCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE-ALELVDRMVEMGHKPDLITIN 197

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++      G+  EA   +++MV  G Q + V+Y  ++N+ CK G+   A  LL +ME++
Sbjct: 198 TLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEER 257

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             + D   ++I+IDGLCK G++  A      M   G  +N+  YN ++      G+ D  
Sbjct: 258 NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDG 317

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M  +    +  T+S ++ +  K  +L  A +L    +  G+        +++DG
Sbjct: 318 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 377

Query: 296 L 296
            
Sbjct: 378 F 378



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 109/252 (43%), Gaps = 31/252 (12%)

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +++  S   P  I ++ +     + ++Y L L +   M+ KG   + +    +I  F 
Sbjct: 75  LFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFC 134

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  +L  A   M +++  G + + ++++TLIN  C EG++  A  L+D M + G + D  
Sbjct: 135 RCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLI 194

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   L++GLC +G    A L ++ M + G   N                           
Sbjct: 195 TINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPN--------------------------- 227

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
               + TY  +++ +CK+ +   A +LL    +  +++       ++DGL   G    A 
Sbjct: 228 ----AVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAF 283

Query: 307 KIQSKIRMAKIS 318
            + +++ M  I+
Sbjct: 284 NLFNEMEMKGIT 295



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NIM+ GLCK      A  +FR +++ G  P+  TYNILI+     G    +  +
Sbjct: 541 PGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKL 600

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           ++EL   G + +A T   ++      R  K  L++LS
Sbjct: 601 IEELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDMLS 637


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 148/295 (50%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++ G  K +  + A  +   ++K            ++ GLC  G L  A 
Sbjct: 403 IKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRAN 462

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+   G  PN + YTTI+K   +  +++  ++IL  MK +G + D F Y TVI  F
Sbjct: 463 ELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGF 522

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+++E   Y+ +M+  G++ ++ +Y   I+ YC+ G+++AA     EM   G   + 
Sbjct: 523 CKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPND 582

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T LIDG CK GN   A      M   G   +++ ++ ++  L K+GK+  A+ VF  
Sbjct: 583 VICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSE 642

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +     V D FTY+S++ NLCK   L +A +L     K G+        A+++GL
Sbjct: 643 LLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGL 697



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 142/304 (46%), Gaps = 4/304 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+++++ GLC+    D AL + R +   G +P+   Y  LI G C+  R    + +
Sbjct: 265 PNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ + YT ++    +        ++   M  +    + F Y  +I    K
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCK 384

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG L++A D   +M   G++ DI +YN LI  Y K   +E AY LL E++K+    + Y 
Sbjct: 385 IGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYM 444

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              +++GLC  G++  A    + M   G   N+  Y  IV  L K+G+ + AI +   M+
Sbjct: 445 CGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMK 504

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D F Y++++   CKA ++      L+  +  G++       A + G   +G  +
Sbjct: 505 DQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQ 564

Query: 304 EAKK 307
            A++
Sbjct: 565 AAER 568



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 142/308 (46%), Gaps = 5/308 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P       +++G CK+  T  A   FR +   G +P++ T+++LI GL K G+
Sbjct: 573 MLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGK 632

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +  EL D G  P+  TYT+++    +    K   E+   M +KG   +   Y  
Sbjct: 633 LQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNA 692

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+G + +A +  + +   G+  + V+Y+T+I  YCK   L  A+ L   M+  G
Sbjct: 693 LINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVG 752

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + +  LIDG CKAGN + A      M + G  S   A+N ++D   K GK+  A 
Sbjct: 753 VPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIAST-PAFNALIDGFFKLGKLIEAY 811

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + E M       +  TY+ ++   C    +  A +L +   K  V        +++ G 
Sbjct: 812 QLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGY 871

Query: 297 RHSGCRRE 304
              G R E
Sbjct: 872 NRIGRRSE 879



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 152/347 (43%), Gaps = 40/347 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P    +  ++ GL K    + A+++   ++  G  P++  YN +I G CKAG+
Sbjct: 468 MISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGK 527

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG----LEILSA----------- 105
           +   +  L E+   G  PN  TY   +    R  + +      +E+L +           
Sbjct: 528 MEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTD 587

Query: 106 --------------------MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                               M  +G   D   +  +I    K G+L+EA     +++  G
Sbjct: 588 LIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKG 647

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  D+ +Y +LI+  CKEG L+AA+ L D+M K+G   +  T+  LI+GLCK G I  AR
Sbjct: 648 LVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAR 707

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
              + + + G   N   Y+ I+    K   +  A  +F  M++     DSF Y +++   
Sbjct: 708 ELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGC 767

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           CKA     A  L L  ++ G+     A  A++DG    G   EA ++
Sbjct: 768 CKAGNTEKALSLFLGMVEEGIAS-TPAFNALIDGFFKLGKLIEAYQL 813



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 146/300 (48%), Gaps = 11/300 (3%)

Query: 18  NGLCKNRYTDNALRMFRGLQKH---GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           N L K+    N + +F  + K      VP++ TY  LI   C+ G++   + +L ++ + 
Sbjct: 202 NSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEK 261

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  PN +TY+ ++    R       LE+  +M  KG   D + Y T+I  F +  R  E 
Sbjct: 262 GCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEG 321

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              +++M T G++ D V+Y  LIN + K+  +  A+ + +EM  +  + + +T+  LI G
Sbjct: 322 KSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHG 381

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----- 249
           LCK G+++ A      M  +G   +++ YNC+++   K   ++ A  +   +E+K     
Sbjct: 382 LCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELL--IEIKKENLT 439

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +++   ++V+ LC    L  A++L    +  G++        +V GL   G   EA KI
Sbjct: 440 ANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKI 499



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 145/348 (41%), Gaps = 41/348 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++ LCK      A  +   + K G  P +VTYN LI GLCK G +  AR
Sbjct: 648 LVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAR 707

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + + G A N++TY+TI+    ++       ++   MK  G   D F YC +I   
Sbjct: 708 ELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGC 767

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  ++A      MV +G+     ++N LI+ + K GKL  AY L+++M       + 
Sbjct: 768 CKAGNTEKALSLFLGMVEEGIA-STPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNH 826

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+TILI+  C  GNIK A      M K     N+  Y  ++    + G+     ++F+ 
Sbjct: 827 VTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDE 886

Query: 246 MEVK----DSFTYSSMVH-----------------------------------NLCKAKR 266
           M  +    D   +S MV                                     LCK   
Sbjct: 887 MVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNN 946

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI-QSKIR 313
           L    K+L    K G ++  +    +V     +G   EA ++ +S +R
Sbjct: 947 LSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVR 994



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 3/277 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+   ++G C+      A R F  +   G  P  V    LI G CK G 
Sbjct: 538 MIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGN 597

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A    + + D G  P+  T++ ++    +N K +  + + S +  KG   D F Y +
Sbjct: 598 TTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTS 657

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   K G LK A +  + M   G+  +IV+YN LIN  CK G++  A  L D + ++G
Sbjct: 658 LISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKG 717

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T++ +I G CK+ N+  A      M  +G   +   Y  ++D   K G  + A+
Sbjct: 718 LARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKAL 777

Query: 241 NVFESM---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++F  M    +  +  +++++    K  +L  A +L+
Sbjct: 778 SLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLV 814



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 134/311 (43%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  ++NG  K      A ++   +          TY  LI GLCK G L  A 
Sbjct: 333 LKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAE 392

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P+  TY  +++  ++ +  +   E+L  +K++  T + +    ++   
Sbjct: 393 DLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGL 452

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L  A +  ++M++ G++ +IV Y T++    KEG+ E A  +L  M+ QG   D 
Sbjct: 453 CHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDV 512

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----IN 241
           + +  +I G CKAG ++  + +L  M   G   N+  Y   +    + G++  A    I 
Sbjct: 513 FCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIE 572

Query: 242 VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           + +S    +    + ++   CK      A       L  GV         ++ GL  +G 
Sbjct: 573 MLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGK 632

Query: 302 RREAKKIQSKI 312
            +EA  + S++
Sbjct: 633 LQEAMGVFSEL 643



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 79/176 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+ I++   C       A ++F  +QK   +P ++TY  L+ G  + GR
Sbjct: 817 MVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGR 876

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 +  E+   G  P+ + ++ ++    +   +   L+++  M  +G       Y  
Sbjct: 877 RSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTI 936

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +I A  K   L E    ++++   G +L + +  TL+  + + G+ + A  +L+ M
Sbjct: 937 LIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 137/276 (49%), Gaps = 1/276 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP  AT+N +LNGLCK    + A+ + R +  +G  P++VTY  LI GL K  R   A  
Sbjct: 291 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 350

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + KE+   G A + + YT +++   +  K      +   M   G   D     T+I    
Sbjct: 351 LFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLS 410

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+  A    + M   G+  + V Y+ LI+  CK  K++ A  +L +M+K     D  
Sbjct: 411 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 470

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ ILIDGLCK+G+++ AR   + M + G   ++  YN ++  L K G  D A  V + M
Sbjct: 471 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDM 530

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                F YSS+V  LCK+ +L     L     +SGV
Sbjct: 531 S-SSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGV 565



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 153/299 (51%), Gaps = 5/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T N++L+GLCK+     A+  F  +++   V    T++ILI GL KAG +  A 
Sbjct: 186 VAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPV-SAATFSILINGLVKAGMMIQAH 244

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E   +G   +  TYT I+    +N+K +  + ++  +   G T     Y  ++   
Sbjct: 245 SLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGL 304

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+GRL+EA D + ++V +G   D+V+Y +LI+   KE +   AY L  EM  +G   D 
Sbjct: 305 CKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDT 364

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GL + G I  A    + M   G   ++   + ++D L K G+I  A+ +F+S
Sbjct: 365 VCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKS 424

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           ME +    +   YS+++H LCKA+++  A ++L    K+           ++DGL  SG
Sbjct: 425 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 483



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 153/309 (49%), Gaps = 9/309 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+  +++GL K + +  A ++F+ +   G   + V Y  LI+GL + G++  A  
Sbjct: 326 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASS 385

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + K +   G  P+ +T +T++    +  +    + I  +M+ +G   +   Y  +I    
Sbjct: 386 VYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLC 445

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  ++  A + + QM       D ++YN LI+  CK G +EAA    DEM + G + D Y
Sbjct: 446 KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVY 505

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ ILI GLCKAGN   A   L+ M+   F      Y+ +VD L K GK++    +F  M
Sbjct: 506 TYNILISGLCKAGNTDAACGVLDDMSSSRF-----VYSSLVDGLCKSGKLEGGCMLFHEM 560

Query: 247 E---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           E   V +S T + ++ +LCKA R+  A  L  +  K G+     A  +++  L  SG   
Sbjct: 561 ERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMP-HPYAYNSIISALIKSGKVN 619

Query: 304 EAKKIQSKI 312
           E + +  ++
Sbjct: 620 EGQAVYQEM 628



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 118/268 (44%), Gaps = 45/268 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    ++ +++GLCK R  D AL M   ++K    P+ +TYNILI GLCK+G +  AR
Sbjct: 430 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 489

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+ ++G  P+  TY  +                                   I+  
Sbjct: 490 AFFDEMLEAGCKPDVYTYNIL-----------------------------------ISGL 514

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G    A   ++ M +         Y++L++  CK GKLE   +L  EME+ G   + 
Sbjct: 515 CKAGNTDAACGVLDDMSSSR-----FVYSSLVDGLCKSGKLEGGCMLFHEMERSGV-ANS 568

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T T LI  LCKA  +  A      + K G   +  AYN I+  L K GK++    V++ 
Sbjct: 569 QTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQE 627

Query: 246 ME---VKDSFTYSSMVHNLCKAKRLPSA 270
           M      D  TY+++++ +  A R+  A
Sbjct: 628 MTRWWKPDRVTYNALLNGMIGANRMDRA 655



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 93/193 (48%), Gaps = 6/193 (3%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFEC 183
           F +  R +EA + ++  +    + D+ ++N LI  YC   + E A+ ++ EME+  G   
Sbjct: 129 FARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAP 188

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              TH +++ GLCK+G +  A  H E + +     +   ++ +++ L K G +  A ++ 
Sbjct: 189 SLKTHNLVLHGLCKSGKVLAAMDHFEAVRR-SMPVSAATFSILINGLVKAGMMIQAHSLA 247

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           +         D  TY+++V+ L K K++  A  L+     +G     +   A+++GL   
Sbjct: 248 QETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKM 307

Query: 300 GCRREAKKIQSKI 312
           G   EA  +  KI
Sbjct: 308 GRLEEAIDLLRKI 320



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 145 GVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
           G Q  + + N L++++ +  +  EA  LL +E+    F  D  T  +LI G C A   + 
Sbjct: 114 GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATI-FRPDVETWNVLITGYCLAREPEE 172

Query: 204 ARLHLEYMNK-IGFDSNLEAYNCIVDRLGKDGKIDHAINVFE----SMEVKDSFTYSSMV 258
           A   +  M +  G   +L+ +N ++  L K GK+  A++ FE    SM V  + T+S ++
Sbjct: 173 AFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAA-TFSILI 231

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           + L KA  +  A  L      +G  I      A+V+ L  +   +EA  +  KI
Sbjct: 232 NGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKI 285



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 41/182 (22%)

Query: 3   CG---DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           CG   D++     ++ +++GLCK+   +    +F  +++ G V    T   LI  LCKA 
Sbjct: 524 CGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSG-VANSQTRTRLIFHLCKAN 582

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+  A                                   + + +A++++G     + Y 
Sbjct: 583 RVDEA-----------------------------------VSLFNAIRKEGMPHP-YAYN 606

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++I+A +K G++ E     ++M T   + D V+YN L+N      +++ A+    EM  +
Sbjct: 607 SIISALIKSGKVNEGQAVYQEM-TRWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGR 665

Query: 180 GF 181
           G+
Sbjct: 666 GY 667


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 158/322 (49%), Gaps = 4/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +L GLC++   D A  +F+ +   G  P++ ++ ILI G C+ G 
Sbjct: 156 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 215

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I KE+   G  P+ ++++ ++    R  K    +  L  M+  G   DG  Y  
Sbjct: 216 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 275

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F + G + +A    ++MV  G   D+V+YNTL+N  CKE +L  A  LL+EM ++G
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T T LI G C  G +  A    + M       ++  YN ++D + + G +D A 
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 395

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++++ M  ++ F    TYS ++ + C+  ++  A   L   +  G+        +++ G 
Sbjct: 396 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 455

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
             SG   + +K   K+ + K+S
Sbjct: 456 CRSGNVSKGQKFLQKMMVNKVS 477



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 143/316 (45%), Gaps = 39/316 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C  L P    + +++ G C+     +ALR+   +   G +P++VTYN L+ GLCK  R
Sbjct: 261 MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR 320

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L E+ + G  P+  T+TT++                             GYC 
Sbjct: 321 LLDAEGLLNEMRERGVPPDLCTFTTLIH----------------------------GYCI 352

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                   G+L +A    + M+   ++ DIV+YNTLI+  C++G L+ A  L D+M  + 
Sbjct: 353 E-------GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE 405

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T++ILID  C+ G ++ A   L+ M   G   N+  YN I+    + G +    
Sbjct: 406 IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQ 465

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + M V     D  TY++++H   K  ++  A KLL    K  V+        +++G 
Sbjct: 466 KFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 525

Query: 297 RHSGCRREAKKIQSKI 312
              G  +EA  I  K+
Sbjct: 526 SVHGNVQEAGWIFEKM 541



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 141/295 (47%), Gaps = 4/295 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T NIM++  CK    D    +   ++K    P++VT+N+++    +AG    A  ++ 
Sbjct: 95  TYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVD 154

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P  +TY +++K   R+  +    E+   M   G   D   +  +I  F ++G
Sbjct: 155 SMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVG 214

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++EA    ++M   G++ D+VS++ LI L+ + GK++ A   L EM   G   D   +T
Sbjct: 215 EIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYT 274

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           ++I G C+AG +  A    + M   G   ++  YN +++ L K+ ++  A  +   M  +
Sbjct: 275 MVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 334

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               D  T+++++H  C   +L  A +L  + L   +R        ++DG+   G
Sbjct: 335 GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQG 389



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 36/210 (17%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T++I+++  C+    ++A      +   G +P ++TYN +IKG C++G +   
Sbjct: 405 EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKG 464

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           +  L+++  +  +P+ ITY T+                                   I  
Sbjct: 465 QKFLQKMMVNKVSPDLITYNTL-----------------------------------IHG 489

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           ++K  ++ +A   +  M  + VQ D+V+YN LIN +   G ++ A  + ++M  +G E D
Sbjct: 490 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD 549

Query: 185 KYTHTILIDGLCKAGNIKGA-RLHLEYMNK 213
           +YT+  +I+G   AGN K A +LH E + +
Sbjct: 550 RYTYMSMINGHVTAGNSKEAFQLHDEMLQR 579



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 4/223 (1%)

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R I+  L  S   P    +  +++   ++RK +   E    +              ++AA
Sbjct: 10  REIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAA 69

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + G    A D    + +   +++  + N +++ YCK  + +    ++ EMEK+    D
Sbjct: 70  LSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPD 129

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             TH +++D   +AG+ + A   ++ M   G    +  YN ++  L + G  D A  VF+
Sbjct: 130 VVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFK 189

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            M+      D  +++ ++   C+   +  A K+       G++
Sbjct: 190 EMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIK 232


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 168/341 (49%), Gaps = 39/341 (11%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            TFN ++NGLCK      A+ +F  +   G+ P++ TY  +I GLCK G    A  + ++
Sbjct: 193 VTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRK 252

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +G++G  P+ +TY+TI+    ++R+    L+I S MK KG + + F Y ++I       R
Sbjct: 253 MGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSR 312

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-------- 182
            +EA+  + +M++  +  +IV+++ LIN++CKEG +  A  +L  M + G E        
Sbjct: 313 WREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSS 372

Query: 183 ---------------------------CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
                                       D +++ ILI+G CKA  I  A+     M   G
Sbjct: 373 LMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 432

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSAS 271
              ++ +YN ++D L + G++  A ++F++M     + D  TYS ++   CK   L  A 
Sbjct: 433 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAF 492

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +L  +   + ++        ++D +  S   +EA+K+ S++
Sbjct: 493 RLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 533



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 151/315 (47%), Gaps = 20/315 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++ GLC       A  M   +     +P +VT+++LI   CK G +  AR
Sbjct: 293 ISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEAR 352

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA------MKRKGYTFDGFGYC 119
            +LK + + G  PN +TY+++M        Y L  E++ A      M  KG   D F Y 
Sbjct: 353 GVLKTMTEMGVEPNVVTYSSLMN------GYSLQAEVVEARKLFDVMITKGCKPDVFSYN 406

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I  + K  R+ EA     +M+  G+  DIVSYNTLI+  C+ G+L  A+ L   M   
Sbjct: 407 ILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN 466

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T++IL+DG CK G +  A      M       N+  YN ++D + K   +  A
Sbjct: 467 GNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEA 526

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F  + V+    +   Y+++++ LCK   L  A +   +  + G    + +   ++ G
Sbjct: 527 RKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRG 586

Query: 296 -LRHSGCRREAKKIQ 309
            L+H   + E++ +Q
Sbjct: 587 FLQH---KDESRAVQ 598



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 151/312 (48%), Gaps = 14/312 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P T T ++++N   + +  D    +   + K G    +VT+N LI GLCK G+   A 
Sbjct: 153 LSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAV 212

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA-----MKRKGYTFDGFGYCT 120
            +  ++   G+ P+  TYTTI+     N   K+G  + +A     M   G   D   Y T
Sbjct: 213 ELFDDMVARGYQPDVHTYTTII-----NGLCKIGETVAAAGLFRKMGEAGCQPDVVTYST 267

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K  R+ EA D    M   G+  +I +YN+LI   C   +   A  +L+EM    
Sbjct: 268 IIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN 327

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T ++LI+  CK GN+  AR  L+ M ++G + N+  Y+ +++      ++  A 
Sbjct: 328 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEAR 387

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F+ M  K    D F+Y+ +++  CKAKR+  A +L    +  G+     +   ++DGL
Sbjct: 388 KLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGL 447

Query: 297 RHSGCRREAKKI 308
              G  REA  +
Sbjct: 448 CQLGRLREAHDL 459



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 107/202 (52%), Gaps = 5/202 (2%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILS-AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
           P  I +  ++    + R Y   +  LS  M+  G + D +    +I  F ++ R+     
Sbjct: 119 PCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFS 178

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
            + +++  G+QL IV++NTLIN  CK GK   A  L D+M  +G++ D +T+T +I+GLC
Sbjct: 179 VLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLC 238

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSF 252
           K G    A      M + G   ++  Y+ I+D L KD +++ A+++F  M+ K    + F
Sbjct: 239 KIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIF 298

Query: 253 TYSSMVHNLCKAKRLPSASKLL 274
           TY+S++  LC   R   AS +L
Sbjct: 299 TYNSLIQGLCNFSRWREASAML 320



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 109/220 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   ++NI++NG CK +    A ++F  +   G  P++V+YN LI GLC+ GR
Sbjct: 393 MITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGR 452

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR A  + K +  +G+ P+  TY+ ++    +         +  AM+      +   Y  
Sbjct: 453 LREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNI 512

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K   LKEA     ++   G+Q ++  Y T+IN  CKEG L+ A      ME+ G
Sbjct: 513 LIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDG 572

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
              +++++ ++I G  +  +   A   +  M + GF +++
Sbjct: 573 CPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADV 612



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   LTP   ++N +++GLC+      A  +F+ +  +G +P+L TY+IL+ G CK G 
Sbjct: 428 MIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGY 487

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + + +  +   PN + Y  ++    ++R  K   ++ S +  +G   +   Y T
Sbjct: 488 LAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTT 547

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L EA +    M  DG   +  SYN +I  + +      A  L+ EM ++G
Sbjct: 548 IINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKG 607

Query: 181 FECDKYT 187
           F  D  T
Sbjct: 608 FVADVAT 614



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 5/197 (2%)

Query: 121 VIAAFVKIGRLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +++A VK+    +A   + +QM   G+  D  + + LIN + +  +++  + +L ++ K 
Sbjct: 127 LLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKL 186

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G +    T   LI+GLCK G    A    + M   G+  ++  Y  I++ L K G+   A
Sbjct: 187 GLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAA 246

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F  M       D  TYS+++ +LCK +R+  A  +       G+        +++ G
Sbjct: 247 AGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQG 306

Query: 296 LRHSGCRREAKKIQSKI 312
           L +    REA  + +++
Sbjct: 307 LCNFSRWREASAMLNEM 323



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 5/193 (2%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD-EMEKQGFECDKYTHT 189
           + +A  Y   M+    +  I+ +N L++   K      A + L  +ME  G   D YT  
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           +LI+   +   +      L  + K+G    +  +N +++ L K GK   A+ +F+ M  +
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR 221

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D  TY+++++ LCK     +A+ L     ++G +        ++D L       EA
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 281

Query: 306 KKIQSKIRMAKIS 318
             I S ++   IS
Sbjct: 282 LDIFSYMKAKGIS 294


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 145/276 (52%), Gaps = 3/276 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +  ++ GL +      A  +++ +   G VP++VT + +I GLCKAGR+  A  I K
Sbjct: 270 TVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFK 329

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G APN + Y+ ++    + RK    LE+L+ MK+   T D   Y  +I    K G
Sbjct: 330 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 389

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++ A  + ++M+  G + D+ +YN L++ +CK G  +AA  + D+M       +  T+ 
Sbjct: 390 DVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYG 449

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            LI GLCK   +  A L+ ++M + G   +   Y+ +VD L K GK++    +F+ ME  
Sbjct: 450 TLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERS 509

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            V +S T + ++ +LCKA R+  A  L  +  K G+
Sbjct: 510 GVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 545



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP  AT+N +LNGLCK    + A+ + R +  +G  P++VTY  LI GL K  R   A  
Sbjct: 197 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 256

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + KE+   G   + + YT +++   +  K      +   M  +G   D     T+I    
Sbjct: 257 LFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLC 316

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+  A    + M   G+  + V Y+ LI+  CK  K++ A  +L +M+K     D  
Sbjct: 317 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 376

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ ILIDGLCK+G+++ AR   + M + G   ++  YN +V    K G  D A  VF+ M
Sbjct: 377 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDM 436

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                  +  TY +++  LCK ++L  AS       + G         ++VDGL  SG
Sbjct: 437 SSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSG 494



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 155/298 (52%), Gaps = 5/298 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T+N+++ G C  R  + A  + R +++ +G  P L T+N+++ GLCK+G++  A  
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             +    +G   +  TYT I+    +N+K +  + ++  +   G T     Y  ++    
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+GRL+EA D + ++V +G   D+V+Y +LI+   KE +   AY L  EM  +G   D  
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +T LI GL +AG I  A    + M   G   ++   + ++D L K G+I  A+ +F+SM
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSM 331

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           E +    +   YS+++H LCKA+++  A ++L    K+           ++DGL  SG
Sbjct: 332 EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 389



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 135/268 (50%), Gaps = 4/268 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + M++GLCK      A+R+F+ ++  G  P  V Y+ LI GLCKA ++  A  +
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 362

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++  +   P+ ITY  ++    ++   +        M   G   D + Y  +++ F K
Sbjct: 363 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCK 422

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A    + M +     ++V+Y TLI+  CK  +L  A L    M+++G   D + 
Sbjct: 423 AGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFV 482

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+DGLCK+G ++G  +  + M + G  +N +    ++  L K  ++D A+++F ++ 
Sbjct: 483 YSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIR 541

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASK 272
              +   + Y+S++  L K+ ++   ++
Sbjct: 542 KEGMPHPYAYNSIISTLIKSAKVNPCTR 569



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 104/231 (45%), Gaps = 37/231 (16%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP T T+NI+++GLCK+   + A   F  + + G  P++ TYNIL+ G CKAG    A  
Sbjct: 372 TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACG 431

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  ++  S  +PN +TY T++    + R+          MK +G   D F Y +++    
Sbjct: 432 VFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLV---- 487

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
                            DG+              CK GKLE   +L DEME+ G   +  
Sbjct: 488 -----------------DGL--------------CKSGKLEGGCMLFDEMERSGVA-NSQ 515

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           T T LI  LCKA  +  A      + K G   +  AYN I+  L K  K++
Sbjct: 516 TRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISTLIKSAKVN 565



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 5/181 (2%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ- 179
           ++  F +  R +EA + ++  +      D+ ++N LI  YC   + E A+ ++ EME+  
Sbjct: 65  LLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDY 124

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G      TH +++ GLCK+G +  A  H E     G   ++  Y  IVD L K+ KI  A
Sbjct: 125 GVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDA 184

Query: 240 INVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + + E +          TY+++++ LCK  RL  A  LL   + +G         +++DG
Sbjct: 185 VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 244

Query: 296 L 296
           L
Sbjct: 245 L 245



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 7/174 (4%)

Query: 145 GVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
           G Q  + + N L++++ +  +  EA  LL +E+    F  D  T  +LI G C A   + 
Sbjct: 54  GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATT-FLPDVETWNVLITGYCLAREPEE 112

Query: 204 ARLHLEYMNK-IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMV 258
           A   +  M +  G   +L+ +N ++  L K GK+  A++ FE+        D  TY+++V
Sbjct: 113 AFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIV 172

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             L K K++  A  L+     +G     +   A+++GL   G   EA  +  KI
Sbjct: 173 DWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 226


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 143/283 (50%), Gaps = 4/283 (1%)

Query: 22  KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81
           K R  D A+ + R +   G VP+L TY+ILI G C   R R A+ +L E+ D G  P  I
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI 312

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           TY  ++    R    +    I   M   G   +   + T++    K G++++A + M++M
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
           +  GV+ D  +Y+ LI  +C+   +  A+ LLDEM+K+       T++++I+GLC+ GN+
Sbjct: 373 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 432

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
           +G    L  M   G   N   Y  ++    K+G+++ +  + E M     + D F Y+S+
Sbjct: 433 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 492

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +   CKAKR+  A   L+  L+  +R       A +DG   +G
Sbjct: 493 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAG 535



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 155/319 (48%), Gaps = 8/319 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N +++G  +    + A R+   +   G    L+ +N L+ G+CKAG+
Sbjct: 302 MIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGK 361

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I++E+ + G  P++ TY+ +++   R +      E+L  MK++        Y  
Sbjct: 362 MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSV 421

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G L+     + +MV +G++ + V Y TL+  + KEG++E + ++L+ M +QG
Sbjct: 422 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 481

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + +  LI G CKA  ++ AR +L  M +     N   Y   +D   K G+++ A 
Sbjct: 482 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIAD 541

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ--KAVVD 294
             F  M     + +   Y++++   CK   +  A  +    L    R+L+  Q    ++ 
Sbjct: 542 RYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR--RVLQDVQTYSVLIH 599

Query: 295 GLRHSGCRREAKKIQSKIR 313
           GL  +G   EA  I S+++
Sbjct: 600 GLSRNGKMHEAFGIFSELQ 618



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 143/315 (45%), Gaps = 27/315 (8%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI+++GLCK    + A  +F  ++  G  P  VTY  ++ G CK+     A 
Sbjct: 657 INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAF 716

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+   G  P+A  Y  I+  C +  K++  L++   M  KG+      + T+I  +
Sbjct: 717 QLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGY 775

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L+EA   +E+M+      + V+Y +LI+  CK G +  A  L  EM+++      
Sbjct: 776 CKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTA 835

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T L+ G    GN+       E M   G + +   Y  ++D   ++G      NV E+
Sbjct: 836 KTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREG------NVMEA 889

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            ++KD      M                    +KSG R+       +  G + +G   EA
Sbjct: 890 CKLKDEILVKGMP-------------------MKSGFRLGLPTCSVIARGFQIAGNMDEA 930

Query: 306 KKI-QSKIRMAKISH 319
            ++ +S ++   +S+
Sbjct: 931 AEVLRSMVKFGWVSN 945



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 145/310 (46%), Gaps = 6/310 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P    +  ++ G CK      A  +FR +     + ++ TY++LI GL + G++ 
Sbjct: 550 CGVL-PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 608

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  I  EL + G  PNA TY +++    +        ++L  M  KG   D   Y  +I
Sbjct: 609 EAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILI 668

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K G ++ A +  + +   G+  + V+Y  +++ YCK     AA+ LL+EM  +G  
Sbjct: 669 DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVP 728

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D + + ++++  CK    + A    + M + GF S + ++N +++   K GK+  A ++
Sbjct: 729 PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHL 787

Query: 243 FESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            E M     + +  TY+S++ + CKA  +  A +L L   +  V        +++ G  +
Sbjct: 788 LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHN 847

Query: 299 SGCRREAKKI 308
            G   E   +
Sbjct: 848 IGNMSEVSAL 857



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 15/256 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +N++LN  CK    + AL +F+ + + GF    V++N LI+G CK+G+
Sbjct: 722 MLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGK 780

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           L+ A  +L+E+ +    PN +TYT+++    K        +L LE    M+ +       
Sbjct: 781 LQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLE----MQERNVMPTAK 836

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y +++  +  IG + E +   E+MV  G++ D ++Y  +I+ YC+EG +  A  L DE+
Sbjct: 837 TYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEI 896

Query: 177 ------EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
                  K GF     T +++  G   AGN+  A   L  M K G+ SN  +   +VD  
Sbjct: 897 LVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGN 956

Query: 231 GKDGKIDHAINVFESM 246
                 + + N+ + M
Sbjct: 957 QNGANSEDSDNLLKQM 972



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 108/257 (42%), Gaps = 22/257 (8%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P  V +++L+    K G L  A  +     +    P+ ++  +++    +  K +L  ++
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
              M       D + Y  +I+A  K+G +K+A                     L+ +  K
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAK------------------RVLLEMGEK 253

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
              L+ A  L   M  +G   D YT+ ILI+G C     + A+L L  M  +G       
Sbjct: 254 ARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPIT 313

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN ++D   + G I+ A  + + M       +   ++++++ +CKA ++  A +++   +
Sbjct: 314 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 373

Query: 279 KSGVRILKSAQKAVVDG 295
           + GV         +++G
Sbjct: 374 EKGVEPDSQTYSLLIEG 390


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 143/300 (47%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T+NI++ G C        L  F  ++++G +P +VTYN LI   CK GR
Sbjct: 205 MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 264

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LK +   G  PN I+Y  I+    R    K   EIL  M  KG+T D   Y T
Sbjct: 265 IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 324

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K G   +A     +MV +GV   +V+Y  LIN  CK   L  A    D+M  +G
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 384

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++ T+T LIDG  + G +  A   L  M + GF  ++  YN  +       +++ A+
Sbjct: 385 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 444

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V + M  K    D  +YS+++   C+   L  A ++    ++ GV        +++ GL
Sbjct: 445 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 148/322 (45%), Gaps = 19/322 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G  +    + A R+   + + GF P +VTYN  I G C   R+  A 
Sbjct: 385 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 444

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++E+ + G AP+ ++Y+TI+    R  +     ++   M  KG + D   Y ++I   
Sbjct: 445 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++ RL EA D  ++M+  G+  D  +Y TLIN YC EG L  A  L DEM  +GF  D 
Sbjct: 505 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDA 564

Query: 186 YTHTILIDGLCKAGNIKGAR---LHLEYMNKIGFD----------SNLE--AYNCIVDRL 230
            T+++LI+GL K    + A+     L Y   +  D          SN+E  +   ++   
Sbjct: 565 VTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGF 624

Query: 231 GKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
              G +  A  VFESM  ++       Y+ ++H  C+   LP A  L    + SG     
Sbjct: 625 CMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHT 684

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
                ++  L   G   E  ++
Sbjct: 685 VTVITLIKALFKEGMNEEMSEV 706



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           P   ++N +L+ + ++R +   +A  ++R + +    P + TYNILI+G C  G L+   
Sbjct: 175 PGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGL 234

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+  +G  PN +TY T++    +  +      +L +M  KG   +   Y  +I   
Sbjct: 235 GCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGL 294

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G +KEA + +E+M   G   D V+YNTL+N YCKEG    A ++  EM + G     
Sbjct: 295 CREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSV 354

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI+ +CKA N+  A    + M   G   N   Y  ++D   + G ++ A  +   
Sbjct: 355 VTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNE 414

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M          TY++ +H  C  +R+  A  ++   ++ G+     +   ++ G     C
Sbjct: 415 MTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF----C 470

Query: 302 RR 303
           R+
Sbjct: 471 RK 472



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 146/311 (46%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++N+++NGLC+      A  +   +   GF P+ VTYN L+ G CK G    A 
Sbjct: 280 MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQAL 339

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+  +G +P+ +TYT ++    + R     +E    M+ +G   +   Y T+I  F
Sbjct: 340 VIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGF 399

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L EA   + +M   G    +V+YN  I+ +C   ++E A  ++ EM ++G   D 
Sbjct: 400 SRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDV 459

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +++ +I G C+ G +  A    + M + G   +   Y+ ++  L +  ++  A ++ + 
Sbjct: 460 VSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQE 519

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D FTY+++++  C    L  A  L    +  G          +++GL     
Sbjct: 520 MLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQAR 579

Query: 302 RREAKKIQSKI 312
            REAK++  K+
Sbjct: 580 TREAKRLLFKL 590



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA-GRLR-TARWI 67
           +A F++M+         D A+      +  GF+P +++YN ++  + ++ G ++ +A  +
Sbjct: 142 SAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEV 201

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+  S  +PN  TY  +++      + + GL     M+R G   +   Y T+I A+ K
Sbjct: 202 YREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCK 261

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+ EA   ++ M + G+Q +++SYN +IN  C+EG ++ A+ +L+EM  +GF  D+ T
Sbjct: 262 MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 321

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++G CK GN   A +    M + G   ++  Y  +++ + K   ++ A+  F+ M 
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMR 381

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           ++    +  TY++++    +   L  A ++L    +SG         A + G
Sbjct: 382 IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG 433



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 15/249 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   +++ +++G C+    D A +M + + + G  P+ VTY+ LI+GLC+  R
Sbjct: 450 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRR 509

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + +E+ D G  P+  TYTT++            L +   M  KG+  D   Y  
Sbjct: 510 LTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSV 569

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI----NL-----------YCKEGK 165
           +I    K  R +EA   + +++ +      V+Y+TLI    N+           +C +G 
Sbjct: 570 LINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGL 629

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           +  A  + + M ++  +  +  + ++I G C+ GN+  A    + M   GF  +      
Sbjct: 630 MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVIT 689

Query: 226 IVDRLGKDG 234
           ++  L K+G
Sbjct: 690 LIKALFKEG 698



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 15/196 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI-------- 52
           MI     P   T+++++NGL K   T  A R+   L     VP  VTY+ LI        
Sbjct: 555 MIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEF 614

Query: 53  -------KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
                  KG C  G +  A  + + + +  H P    Y  I+    R         +   
Sbjct: 615 KSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKE 674

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M   G+        T+I A  K G  +E ++ +   +      +      L+ +  KEG 
Sbjct: 675 MIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGN 734

Query: 166 LEAAYLLLDEMEKQGF 181
           +EA   +L +M K G 
Sbjct: 735 MEAVLNVLTDMAKDGL 750


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 158/322 (49%), Gaps = 4/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +L GLC++   D A  +F+ +   G  P++ ++ ILI G C+ G 
Sbjct: 217 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 276

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I KE+   G  P+ ++++ ++    R  K    +  L  M+  G   DG  Y  
Sbjct: 277 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 336

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F + G + +A    ++MV  G   D+V+YNTL+N  CKE +L  A  LL+EM ++G
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T T LI G C  G +  A    + M       ++  YN ++D + + G +D A 
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 456

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++++ M  ++ F    TYS ++ + C+  ++  A   L   +  G+        +++ G 
Sbjct: 457 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 516

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
             SG   + +K   K+ + K+S
Sbjct: 517 CRSGNVSKGQKFLQKMMVNKVS 538



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 143/316 (45%), Gaps = 39/316 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C  L P    + +++ G C+     +ALR+   +   G +P++VTYN L+ GLCK  R
Sbjct: 322 MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR 381

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L E+ + G  P+  T+TT++                             GYC 
Sbjct: 382 LLDAEGLLNEMRERGVPPDLCTFTTLIH----------------------------GYCI 413

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                   G+L +A    + M+   ++ DIV+YNTLI+  C++G L+ A  L D+M  + 
Sbjct: 414 E-------GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE 466

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T++ILID  C+ G ++ A   L+ M   G   N+  YN I+    + G +    
Sbjct: 467 IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQ 526

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + M V     D  TY++++H   K  ++  A KLL    K  V+        +++G 
Sbjct: 527 KFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 586

Query: 297 RHSGCRREAKKIQSKI 312
              G  +EA  I  K+
Sbjct: 587 SVHGNVQEAGWIFEKM 602



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 141/295 (47%), Gaps = 4/295 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T NIM++  CK    D    +   ++K    P++VT+N+++    +AG    A  ++ 
Sbjct: 156 TYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVD 215

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P  +TY +++K   R+  +    E+   M   G   D   +  +I  F ++G
Sbjct: 216 SMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVG 275

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++EA    ++M   G++ D+VS++ LI L+ + GK++ A   L EM   G   D   +T
Sbjct: 276 EIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYT 335

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           ++I G C+AG +  A    + M   G   ++  YN +++ L K+ ++  A  +   M  +
Sbjct: 336 MVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 395

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               D  T+++++H  C   +L  A +L  + L   +R        ++DG+   G
Sbjct: 396 GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQG 450



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 2/217 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +++G+C+    D A  ++  +      P  VTY+ILI   C+ G+
Sbjct: 427 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 486

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L E+ + G  PN +TY +I+K   R+     G + L  M     + D   Y T
Sbjct: 487 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 546

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  ++K  ++ +A   +  M  + VQ D+V+YN LIN +   G ++ A  + ++M  +G
Sbjct: 547 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKG 606

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGF 216
            E D+YT+  +I+G   AGN K A +LH E + + GF
Sbjct: 607 IEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR-GF 642



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 95/180 (52%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T++I+++  C+    ++A      +   G +P ++TYN +IKG C++G +   
Sbjct: 466 EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKG 525

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           +  L+++  +  +P+ ITY T++    +  K     ++L+ M+++    D   Y  +I  
Sbjct: 526 QKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLING 585

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   G ++EA    E+M   G++ D  +Y ++IN +   G  + A+ L DEM ++GF  D
Sbjct: 586 FSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 99/235 (42%), Gaps = 6/235 (2%)

Query: 55  LCKAGRLRTA--RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT 112
           L +  R R A  R I+  L  S   P    +  +++   ++RK +   E    +      
Sbjct: 59  LLRMSRRRGACRREIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVP 118

Query: 113 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
                   ++AA  + G    A D    + +   +++  + N +++ YCK  + +    +
Sbjct: 119 IPAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAV 178

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           + EMEK+    D  TH +++D   +AG+ + A   ++ M   G    +  YN ++  L +
Sbjct: 179 ISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCR 238

Query: 233 DGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            G  D A  VF+ M+      D  +++ ++   C+   +  A K+       G++
Sbjct: 239 SGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIK 293



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 57/114 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+N +++G  K     +A ++   ++K    P++VTYN+LI G    G 
Sbjct: 532 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGN 591

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           ++ A WI +++   G  P+  TY +++         K   ++   M ++G+  D
Sbjct: 592 VQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 143/266 (53%), Gaps = 4/266 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN++L G C++  +  A+ +F  ++++  +P+ V+YN +I GLCK  RL  A+ + KE+ 
Sbjct: 132 FNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMK 191

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                PN++T++ ++    +N   + G  +L  M++ G   D F Y  +I+ F   G ++
Sbjct: 192 GGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIE 251

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
              +   +M+   V  ++V+Y+ L+N  CK+ K + A  +LD M       D   +T+L 
Sbjct: 252 RGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLA 311

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DGL K G    A   L+ M K G + N   YN I++ L K+G++D A+ + E+M  K   
Sbjct: 312 DGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKK 371

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLL 274
            D  TYS++V  LC   ++  A  LL
Sbjct: 372 PDVVTYSTLVKGLCGVGKIDEAVDLL 397



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 146/300 (48%), Gaps = 8/300 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P + TF+ +++G CKN   +    +   ++K G   ++  Y+ LI G C  G +  
Sbjct: 193 GECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIER 252

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            + +  E+      PN +TY+ +M    + +K+K   ++L  M       D   Y  +  
Sbjct: 253 GKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLAD 312

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  +A   ++ MV  G + + V+YN +IN  CKEG+++ A  +L+ M K+G + 
Sbjct: 313 GLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKP 372

Query: 184 DKYTHTILIDGLCKAGNIKGA--RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           D  T++ L+ GLC  G I  A   L+L    +     ++ A+N ++  L K  ++ HA  
Sbjct: 373 DVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKR 432

Query: 242 VFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           V+ +M V+  F     TY+ ++     A +L  A +L    + SG+    +    +++GL
Sbjct: 433 VYYTM-VERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGL 491



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 145/301 (48%), Gaps = 6/301 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NGLCK +    A  +F+ ++     P  VT++ LI G CK G +    
Sbjct: 160 LIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGF 219

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+   G   +   Y+ ++         + G E+ + M RK  T +   Y  ++ A 
Sbjct: 220 GLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNAL 279

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  + KEA   ++ M    V+ D+V+Y  L +   K G+   A  +LD M K+G E + 
Sbjct: 280 CKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNN 339

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I+GLCK G +  A   LE M K G   ++  Y+ +V  L   GKID A+++   
Sbjct: 340 VTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNL 399

Query: 246 MEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           +  K      D F ++ ++  LCK +RL  A ++  + ++ G          ++DG   +
Sbjct: 400 LMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSA 459

Query: 300 G 300
           G
Sbjct: 460 G 460



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 136/311 (43%), Gaps = 41/311 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLC-----------------------------------KNRY 25
           M+  ++TP   T++ ++N LC                                   KN  
Sbjct: 260 MLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGR 319

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
             +A+++   + K G  P  VTYN +I GLCK GR+  A  IL+ +   G  P+ +TY+T
Sbjct: 320 ASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYST 379

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
           ++K      K    +++L+ +  K +    D F +  VI    K  RL+ A      MV 
Sbjct: 380 LVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVE 439

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            G   +IV+YN LI+ Y   GKL  A  L  +    G   +  T+T+LI+GLCK   +  
Sbjct: 440 RGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSI 499

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVH 259
           A+         G    +  YN ++  L ++  ++ A N+F+ M       D  +++ ++ 
Sbjct: 500 AKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIID 559

Query: 260 NLCKAKRLPSA 270
              KA  + SA
Sbjct: 560 GTLKAGDVESA 570



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 124/292 (42%), Gaps = 41/292 (14%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-------- 59
           P   T+N ++NGLCK    D+AL +   + K G  P++VTY+ L+KGLC  G        
Sbjct: 337 PNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDL 396

Query: 60  -----------------------------RLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                                        RLR A+ +   + + G   N +TY  ++   
Sbjct: 397 LNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGY 456

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
               K    LE+       G + +   Y  +I    K+  L  A     +    G +  +
Sbjct: 457 LSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTV 516

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
             YNTL+   C+E  +E A  L  EM     + D  +  I+IDG  KAG+++ A+  L  
Sbjct: 517 SEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLE 576

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMV 258
           M  +    +   ++ +++R  K G++D A +++E M     V D+  + S++
Sbjct: 577 MLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLL 628



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ++ N +++ L K ++ D+ + +   +      P   + + LI+      +   A  +
Sbjct: 57  PSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGV 116

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G   N   +  ++K   ++      +++   MKR     D   Y TVI    K
Sbjct: 117 LGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCK 176

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             RL EA +  ++M     + + V+++ LI+ +CK G +E  + LL+EMEK G E D + 
Sbjct: 177 GKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFV 236

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI G C  G+I+  +     M +     N+  Y+C+++ L K  K   A  + ++M 
Sbjct: 237 YSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMT 296

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                 D   Y+ +   L K  R   A K+L   +K G         A+++GL   G
Sbjct: 297 GCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEG 353



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 119/245 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    FN+++  LCK R   +A R++  + + GF   +VTYNILI G   AG+L  A 
Sbjct: 407 IKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKAL 466

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K+  DSG +PNA TYT ++    + +   +   + +  +  G       Y T++A+ 
Sbjct: 467 ELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASL 526

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +   +++A +  ++M       D+VS+N +I+   K G +E+A  LL EM       D 
Sbjct: 527 CRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDN 586

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T +ILI+   K G +  A    E M   G   +   ++ ++      GK +  +++ + 
Sbjct: 587 ITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQ 646

Query: 246 MEVKD 250
           M  KD
Sbjct: 647 MADKD 651



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 1/187 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P  AT+ +++NGLCK +    A  +F   +  G  P +  YN L+  LC+   +  AR
Sbjct: 477 ISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQAR 536

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ ++ H P+ +++  I+    +    +   E+L  M       D   +  +I  F
Sbjct: 537 NLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRF 596

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD- 184
           +K+G+L EA    E+MV+ G   D V +++L+  Y  +GK E    +L +M  +    D 
Sbjct: 597 LKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDS 656

Query: 185 KYTHTIL 191
           K T TIL
Sbjct: 657 KLTSTIL 663



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TF+I++N   K    D A  ++  +   G VP+ V ++ L+KG    G+      
Sbjct: 583 VPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVS 642

Query: 67  ILKELGDSGHAPNAITYTTIMKC 89
           +L+++ D     ++   +TI+ C
Sbjct: 643 MLQQMADKDVVLDSKLTSTILAC 665


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 156/311 (50%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+++G CK ++   A  +   +   G +P++ TYN +++GLC  G++  A 
Sbjct: 277 LFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAV 336

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+ +TY T++  CF +R      +++  MK +G   +G  +  +I  F
Sbjct: 337 RLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWF 396

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G++ EA++ M +MV  G   D  +YNT+IN YCK GK+  AY ++DEM ++G + D 
Sbjct: 397 CTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDT 456

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T   L+  +C    +  A        K G+  +   Y  ++    KD + D A+ ++E 
Sbjct: 457 FTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEE 516

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+    V    TY++++  LC + +   A   L   L+ G+   +S    ++ G    G 
Sbjct: 517 MKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGA 576

Query: 302 RREAKKIQSKI 312
             +A +  +K+
Sbjct: 577 VEKAFQFHNKM 587



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 147/280 (52%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFNI+++G C +  T+ ALR+   + ++G  P+ VTYN ++  LCK  +L   R
Sbjct: 207 VQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVR 266

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++ +SG  PN  TY  ++    + +  K   E++  M  KG   D + Y T++   
Sbjct: 267 DLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGL 326

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G++ EA    ++M +  +  D+V+YNTLI+   +    +AA+ L++EM+ +G + + 
Sbjct: 327 CDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENG 386

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            TH I+I   C  G I  A   +  M + GF  +   YN +++   K GK+  A  + + 
Sbjct: 387 VTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDE 446

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           M  K    D+FT ++++H +C  K+L  A  L +   K G
Sbjct: 447 MGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRG 486



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 145/301 (48%), Gaps = 11/301 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNAL---RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           P   T N +LN L ++  + + +    +F+   K G  P + T+NILI G C       A
Sbjct: 171 PNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEA 230

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             ++ ++G+ G  P+ +TY T++    +  +     ++L  MK  G   +   Y  ++  
Sbjct: 231 LRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHG 290

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K+  LKEA + +E M   G+  D+ +YNT++   C EGK++ A  L D+ME      D
Sbjct: 291 YCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPD 350

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF- 243
             T+  LIDG  +      A   +E M   G   N   +N ++     +GKID A NV  
Sbjct: 351 VVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMV 410

Query: 244 ---ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
              ES    D FTY++M++  CKA ++  A K++    + G+++        ++ L H+ 
Sbjct: 411 KMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKL----DTFTLNTLLHTM 466

Query: 301 C 301
           C
Sbjct: 467 C 467



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 4/306 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T NIM+   C     D A  +   + + GF P+  TYN +I G CKAG++  A  ++ E
Sbjct: 387 VTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDE 446

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +G  G   +  T  T++      ++      +    +++GY  D   Y T+I  + K  +
Sbjct: 447 MGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQ 506

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
              A    E+M   G+   I++YNT+I   C  GK + A   L+E+ ++G   D+ T  I
Sbjct: 507 ADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNI 566

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           +I G C  G ++ A      M +     ++   N ++  L ++G ++  + +F +   K 
Sbjct: 567 IIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKG 626

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D+ TY+ ++ + CK +RL  A  L+       +   +    A+V GL  +G   EA+
Sbjct: 627 KPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAE 686

Query: 307 KIQSKI 312
           K+  K 
Sbjct: 687 KLALKF 692



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 6/289 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   T+N M+NG CK      A +M   + + G   +  T N L+  +C   +
Sbjct: 412 MVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQ 471

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  +    G+  + +TY T++   F++ +    L++   MK  G       Y T
Sbjct: 472 LDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNT 531

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G+  +A D + +++  G+  D  + N +I+ YC EG +E A+   ++M +  
Sbjct: 532 IIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHS 591

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            + D +T  IL+ GLC+ G + KG  L   +++K G   +   YN I+    K+ +++ A
Sbjct: 592 LKPDIFTCNILLRGLCREGMLEKGLTLFNTWISK-GKPMDTVTYNIIISSFCKERRLEDA 650

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            ++   ME K    D +TY+++V  L KA R   A KL L   + G ++
Sbjct: 651 FDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQV 699



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 134/302 (44%), Gaps = 15/302 (4%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T N +L+ +C  +  D+A  +    +K G++ + VTY  LI G  K  +   A  + +
Sbjct: 456 TFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWE 515

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ ++G     ITY TI++    + K    ++ L+ +  KG   D      +I  +   G
Sbjct: 516 EMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEG 575

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +++A  +  +MV   ++ DI + N L+   C+EG LE    L +    +G   D  T+ 
Sbjct: 576 AVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYN 635

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF------ 243
           I+I   CK   ++ A   +  M     + +   YN IV  L K G+ + A  +       
Sbjct: 636 IIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEK 695

Query: 244 -ESMEVKDS--------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            + ++ +D+          YS  + +LC   +   A KL     + GV + K     ++D
Sbjct: 696 GQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMD 755

Query: 295 GL 296
           GL
Sbjct: 756 GL 757



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 11/203 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P  +T NI+++G C     + A +    + +H   P++ T NIL++GLC+ G L    
Sbjct: 557 LVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGL 616

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +       G   + +TY  I+    + R+ +   ++++ M+ K    D + Y  ++   
Sbjct: 617 TLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGL 676

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDI-----------VSYNTLINLYCKEGKLEAAYLLLD 174
            K GR +EA     +    G Q+             + Y+  I+  C +GK + A  L  
Sbjct: 677 TKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQ 736

Query: 175 EMEKQGFECDKYTHTILIDGLCK 197
           + E++G   +KYT+  L+DGL K
Sbjct: 737 QAEQKGVSLNKYTYIKLMDGLLK 759



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 11/150 (7%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+NI+++  CK R  ++A  +   ++     P+  TYN ++ GL KAGR   A  +  
Sbjct: 631 TVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLAL 690

Query: 70  ELGDSGH-------AP----NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           +  + G        +P    + + Y+  +       KYK  +++    ++KG + + + Y
Sbjct: 691 KFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTY 750

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
             ++   +K  +    T  +  MV+  +Q 
Sbjct: 751 IKLMDGLLKRRKSFTTTSLLPFMVSATIQF 780


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 149/301 (49%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           + N+++N LC+  + D A+ +   + K G  P   T+N LI GLC  G+++ A  +  E+
Sbjct: 125 SLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEM 184

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              GH PN I+Y TI+    +     + +++   M++ G   D   Y T+I +  K   +
Sbjct: 185 VRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLV 244

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +++ +M+  G+  ++ +YN +++ +C  G+L  A  L  EM  +    D  T TIL
Sbjct: 245 NDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTIL 304

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           +DGLCK G +  ARL  E M + G + N+  YN ++D       ++ A  VFE M     
Sbjct: 305 VDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGC 364

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
                +Y+ +++  CK++R+  A  LL       +         ++ GL   G  +EA  
Sbjct: 365 APGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALN 424

Query: 308 I 308
           I
Sbjct: 425 I 425



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 154/314 (49%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  +TFN ++NGLC       A+ +F  + + G  P +++YN +I GLCK G    A  +
Sbjct: 156 PTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDV 215

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++  +G  P+ +TY TI+    ++R     +E LS M  +G   + F Y  ++  F  
Sbjct: 216 FKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCI 275

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L EAT   ++MV   V  D V+   L++  CKEG +  A L+ + M ++G E +  T
Sbjct: 276 LGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNIST 335

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A+   E M + G    + +YN +++   K  ++D A ++   M 
Sbjct: 336 YNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMY 395

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D+ TYS+++  LC+  R   A  +       G+         ++DG    G   
Sbjct: 396 HKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLD 455

Query: 304 EAKKIQSKIRMAKI 317
           EA K+   ++  K+
Sbjct: 456 EALKLLKSMQEKKL 469



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 140/278 (50%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P T T  I+++GLCK      A  +F  + + G  P + TYN L+ G C    
Sbjct: 289 MVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRL 348

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ + + +   G AP   +Y  ++    ++R+      +L+ M  K    D   Y T
Sbjct: 349 MNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYST 408

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + GR KEA +  ++M + G+  ++V+Y+ L++ +CK G L+ A  LL  M+++ 
Sbjct: 409 LMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK 468

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +   HTILI+G+  AG ++ A+     +   G    +  Y  ++  L K+G  D A 
Sbjct: 469 LEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAY 528

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++F  ME    + +S +Y+ M+    + +   +A +L+
Sbjct: 529 DLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLI 566



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 127/262 (48%), Gaps = 4/262 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M++G C     + A R+F+ +     +P+ VT  IL+ GLCK G +  AR
Sbjct: 259 IPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEAR 318

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + + + G  PN  TY  +M      R      ++   M R+G       Y  +I  F
Sbjct: 319 LVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGF 378

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ EA   + +M    +  D V+Y+TL+   C+ G+ + A  +  EM   G   + 
Sbjct: 379 CKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNL 438

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++IL+DG CK G++  A   L+ M +   + N+  +  +++ +   GK++ A  +F  
Sbjct: 439 VTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSK 498

Query: 246 M---EVKDSF-TYSSMVHNLCK 263
           +    ++ +  TY+ M+  L K
Sbjct: 499 LFADGIRPTIRTYTVMIKGLLK 520



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 116/238 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   ++NI++NG CK+R  D A  +   +      P+ VTY+ L++GLC+ GR
Sbjct: 359 MIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGR 418

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  I KE+   G  PN +TY+ ++    ++      L++L +M+ K    +   +  
Sbjct: 419 PKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTI 478

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G+L+ A +   ++  DG++  I +Y  +I    KEG  + AY L  +ME  G
Sbjct: 479 LIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDG 538

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           F  +  ++ ++I G  +  +   A   ++ M    F +NL  +  ++D   +D  I  
Sbjct: 539 FLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLDLESQDEIISQ 596



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 125/290 (43%), Gaps = 4/290 (1%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           N   D+AL  F  + +    P +  +   +    K  +  T   +  ++   G   N  +
Sbjct: 66  NISIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYS 125

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
              ++ C  R       + IL  M + G       +  +I      G++KEA +   +MV
Sbjct: 126 LNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMV 185

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
             G + +++SYNT+IN  CK G    A  +  +ME+ G + D  T+  +ID LCK   + 
Sbjct: 186 RRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVN 245

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMV 258
            A   L  M   G   N+  YNC+V      G+++ A  +F+ M     + D+ T + +V
Sbjct: 246 DAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILV 305

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             LCK   +  A  +  +  + GV    S   A++DG        EAKK+
Sbjct: 306 DGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKV 355


>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Vitis vinifera]
          Length = 498

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 148/301 (49%), Gaps = 4/301 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ GL K   T+ A R+ + +   G +P+++TYN+L+ GLCK G L+TA  +L E+  SG
Sbjct: 80  LIRGLIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSG 139

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+AITY TI++C F +  +   +       RKG       Y  +I    K     +A 
Sbjct: 140 CPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAM 199

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + +E M  +G   DIV+YN+L+N  CK+GK E   L++  +   G   +  T+  L+  L
Sbjct: 200 EVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSL 259

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDS 251
           C  G        L  MN       +  YN +++ L K G +D AIN F+ M     + D 
Sbjct: 260 CTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDI 319

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
            TY++++  LCK   +  A  LL S   +           V+DGL   GC  +A ++  +
Sbjct: 320 ITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGE 379

Query: 312 I 312
           +
Sbjct: 380 M 380



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 6/311 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ +++  +CK+  T  A+ +   +   G  P++VTYN L+   CK G+      I+  L
Sbjct: 181 TYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNL 240

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN +TY T++     +  +    EIL  M           Y  +I    K G L
Sbjct: 241 LSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLL 300

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A ++ +QMV+     DI++YNTL+   CKEG ++ A  LL  +          T+ I+
Sbjct: 301 DRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIV 360

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGL K G ++ A      M + GF  +   +  +   L +   ++ A+ + + M     
Sbjct: 361 IDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQ 420

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            +K+S  +  ++H LCK K++  A ++L   + S  +  +    A++ G+  +G   EA 
Sbjct: 421 RIKNS-AFRFVIHGLCKKKKVDIAIQVLEMMVSSQCKPNEEIYSAIIKGVGAAGMIEEAN 479

Query: 307 KIQSKIRMAKI 317
           ++  K+   K+
Sbjct: 480 QLHQKLTELKV 490



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 109/252 (43%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N +L+ LC + Y D    +   +      P +VTYNILI GLCK G L  A   
Sbjct: 247 PNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINF 306

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++      P+ ITY T++    +       L +L ++     +     Y  VI    K
Sbjct: 307 FDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAK 366

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +++A +   +M+  G   D +++ TL     +   +E A ++L EM K+        
Sbjct: 367 KGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSA 426

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              +I GLCK   +  A   LE M       N E Y+ I+  +G  G I+ A  + + + 
Sbjct: 427 FRFVIHGLCKKKKVDIAIQVLEMMVSSQCKPNEEIYSAIIKGVGAAGMIEEANQLHQKLT 486

Query: 248 VKDSFTYSSMVH 259
               F   +M H
Sbjct: 487 ELKVFREETMPH 498



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+N +L  LCK    D AL +   L      P L+TYNI+I GL K G 
Sbjct: 310 MVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGC 369

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ + G AP+ IT+ T+    FR    +  L IL  M ++        +  
Sbjct: 370 MEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFRF 429

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           VI    K  ++  A   +E MV+   + +   Y+ +I      G +E A
Sbjct: 430 VIHGLCKKKKVDIAIQVLEMMVSSQCKPNEEIYSAIIKGVGAAGMIEEA 478


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 163/321 (50%), Gaps = 9/321 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK--- 57
           MI   + P   TFNI +NGLCK    + A  +   ++  GF P +VTYN LI G CK   
Sbjct: 191 MIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGS 250

Query: 58  AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
           AG++  A  ILKE+  +   PN IT+ T++    ++            M+R+G   +   
Sbjct: 251 AGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVT 310

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y ++I      G+L EA    ++MV  G++ +IV++N LIN +CK+  ++ A  L D++ 
Sbjct: 311 YNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIA 370

Query: 178 KQGFECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           +Q    +  T   +ID  CKAG + +G  LH   +++ G   N+  YNC++  L ++  +
Sbjct: 371 EQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDE-GIFPNVSTYNCLIAGLCRNQNV 429

Query: 237 DHA---INVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A   +N  E+ E+K D  TY+ ++   CK      A KLL   L  GV+        +
Sbjct: 430 RAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTL 489

Query: 293 VDGLRHSGCRREAKKIQSKIR 313
           +DG    G  + A K+++++ 
Sbjct: 490 MDGYCMEGNLKAALKVRTQME 510



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN +++G CK+     A   F  +Q+ G  P +VTYN LI GL   G+
Sbjct: 264 MLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGK 323

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++   G  PN +T+  ++    + +  K   ++   +  +    +   + T
Sbjct: 324 LDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNT 383

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I AF K G ++E       M+ +G+  ++ +YN LI   C+   + AA  LL+EME   
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+ ILI G CK G    A   L  M  +G   N   YN ++D    +G +  A+
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAAL 503

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            V   ME +    +  TY+ ++   CK  +L  A++LL   L+ G+
Sbjct: 504 KVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGL 549



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 115/226 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TFN ++NG CK +    A ++F  + +   VP  +T+N +I   CKAG 
Sbjct: 334 MVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGM 393

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +   + D G  PN  TY  ++    RN+  +   ++L+ M+      D   Y  
Sbjct: 394 MEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNI 453

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G   +A   + +M+  GV+ + V+YNTL++ YC EG L+AA  +  +MEK+G
Sbjct: 454 LIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEG 513

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
              +  T+ +LI G CK G ++ A   L  M + G + N   Y+ +
Sbjct: 514 KRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 100/204 (49%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P   TFN M++  CK    +    +   +   G  P + TYN LI GLC+   +R A
Sbjct: 373 DLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAA 432

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +L E+ +     + +TY  ++    ++ +     ++L  M   G   +   Y T++  
Sbjct: 433 KKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDG 492

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           +   G LK A     QM  +G + ++V+YN LI  +CK GKLE A  LL+EM ++G   +
Sbjct: 493 YCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPN 552

Query: 185 KYTHTILIDGLCKAGNIKGARLHL 208
           + T+ ++   + + G I     HL
Sbjct: 553 RTTYDVVRLEMLEKGFIPDIEGHL 576



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 42/246 (17%)

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           LG      NA+    ++     N +     E+   ++  G+         +++A VK   
Sbjct: 121 LGGDRPCANALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNE 180

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             E     ++M+   +Q ++ ++N  IN  CK GKL  A  ++++++  GF  +  T+  
Sbjct: 181 TGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNT 240

Query: 191 LIDGLCKAG--------------------------------------NIKGARLHLEYMN 212
           LIDG CK G                                      N+  A+   E M 
Sbjct: 241 LIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQ 300

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
           + G   N+  YN +++ L  +GK+D AI +++ M       +  T++++++  CK K + 
Sbjct: 301 RQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIK 360

Query: 269 SASKLL 274
            A KL 
Sbjct: 361 EARKLF 366


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 154/305 (50%), Gaps = 4/305 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +++ LCK R+ D+AL +F+ ++  G  P +VTY+ LI  LC  GR   A  +L ++ 
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +    PN +T+  ++    +  K+    ++   M ++    D F Y +++  F    RL 
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A    E MV+     D+V+YNTLI  +CK  ++E    L  EM  +G   D  T+T LI
Sbjct: 345 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 404

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVK 249
            GL   G+   A+   + M   G   ++  Y+ ++D L  +GK++ A+ VF+ M   E+K
Sbjct: 405 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 464

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D + Y++M+  +CKA ++     L  S    GV+        ++ GL      +EA  +
Sbjct: 465 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 524

Query: 309 QSKIR 313
             K++
Sbjct: 525 LKKMK 529



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 129/262 (49%), Gaps = 4/262 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TFN +++   K      A +++  + K    P++ TYN L+ G C   R
Sbjct: 283 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 342

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      P+ +TY T++K   ++++ + G E+   M  +G   D   Y T
Sbjct: 343 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 402

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G    A    +QMV+DGV  DI++Y+ L++  C  GKLE A  + D M+K  
Sbjct: 403 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 462

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D Y +T +I+G+CKAG +         ++  G   N+  YN ++  L     +  A 
Sbjct: 463 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 522

Query: 241 NVFESME----VKDSFTYSSMV 258
            + + M+    + +S TY++++
Sbjct: 523 ALLKKMKEDGPLPNSGTYNTLI 544



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NI++N  C+      AL +   + K G+ P +VT + L+ G C   R+  A  ++ ++
Sbjct: 84  TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 143

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+ IT+TT++   F + K    + ++  M ++G   +   Y  V+    K G  
Sbjct: 144 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 203

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++ D+V +NT+I+  CK   ++ A  L  EME +G   +  T++ L
Sbjct: 204 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 263

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + NL  +N ++D   K+GK   A  +++ M  +  
Sbjct: 264 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 323

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D FTY+S+V+  C   RL  A ++ 
Sbjct: 324 DPDIFTYNSLVNGFCMHDRLDKAKQMF 350



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + +LNG C  +   +A+ +   + + G+ P+ +T+  LI GL    +   A  +
Sbjct: 115 PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 174

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G  PN +TY  ++    +     L L +L+ M+      D   + T+I +  K
Sbjct: 175 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 234

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A +  ++M T G++ ++V+Y++LI+  C  G+   A  LL +M ++    +  T
Sbjct: 235 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 294

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LID   K G    A    + M K   D ++  YN +V+      ++D A  +FE M 
Sbjct: 295 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 354

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            KD F    TY++++   CK+KR+   ++L       G+         ++ GL H G   
Sbjct: 355 SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 414

Query: 304 EAKKI 308
            A+K+
Sbjct: 415 NAQKV 419



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 148/314 (47%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  +++GL  +     A+ +   + + G  P LVTY +++ GLCK G    A  +
Sbjct: 150 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL 209

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++  +    + + + TI+    + R     L +   M+ KG   +   Y ++I+    
Sbjct: 210 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 269

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V++N LI+ + KEGK   A  L D+M K+  + D +T
Sbjct: 270 YGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT 329

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++G C    +  A+   E+M       ++  YN ++    K  +++    +F  M 
Sbjct: 330 YNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMS 389

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D+ TY++++  L       +A K+    +  GV         ++DGL ++G   
Sbjct: 390 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 449

Query: 304 EAKKIQSKIRMAKI 317
           +A ++   ++ ++I
Sbjct: 450 KALEVFDYMQKSEI 463



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 1/240 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   T+N ++ G CK++  ++   +FR +   G V + VTY  LI+GL   G 
Sbjct: 353 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 412

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ + K++   G  P+ +TY+ ++     N K +  LE+   M++     D + Y T
Sbjct: 413 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 472

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++ +  D    +   GV+ ++V+YNT+I+  C +  L+ AY LL +M++ G
Sbjct: 473 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 532

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  LI    + G+   +   +  M    F  +      + + L  DG++D + 
Sbjct: 533 PLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDKSF 591



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 39/305 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +L+ + K +  D  + +   +Q+   V  L TYNILI   C+  ++  A  +
Sbjct: 45  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 104

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+ +T ++++      ++    + ++  M   GY  D   + T+I     
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +  EA   +++MV  G Q ++V+Y  ++N  CK G  + A  LL++ME    E D   
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              +ID LCK  +                                   +D A+N+F+ ME
Sbjct: 225 FNTIIDSLCKYRH-----------------------------------VDDALNLFKEME 249

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    +  TYSS++  LC   R   AS+LL   ++  +        A++D     G   
Sbjct: 250 TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV 309

Query: 304 EAKKI 308
           EA+K+
Sbjct: 310 EAEKL 314



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 127/308 (41%), Gaps = 40/308 (12%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           I+ NGL  +   D+A+ +F G+ K   +P +V +N L+  + K  +      + +++   
Sbjct: 18  ILRNGL-HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL 76

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
                  TY  ++ C  R  +  L L +L  M + GY                       
Sbjct: 77  EIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGY----------------------- 113

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
                       +  IV+ ++L+N YC   ++  A  L+D+M + G+  D  T T LI G
Sbjct: 114 ------------EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 161

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
           L        A   ++ M + G   NL  Y  +V+ L K G  D A+N+   ME      D
Sbjct: 162 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD 221

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
              +++++ +LCK + +  A  L       G+R       +++  L   G   +A ++ S
Sbjct: 222 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 281

Query: 311 KIRMAKIS 318
            +   KI+
Sbjct: 282 DMIEKKIN 289



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M++GLC  R    A  + + +++ G +P   TYN LI+   + G    +  +
Sbjct: 500 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAEL 559

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           ++E+       +A T   +       R  K  L++LS
Sbjct: 560 IREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 596


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 151/310 (48%), Gaps = 6/310 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N+M++ LCK    +N+ R+F  +++ G  P++VTYN LI G  K G 
Sbjct: 280 MIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGS 339

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     +  E+ D G  P+ ITY  ++ C  +  K     E  S MK  G   +   Y T
Sbjct: 340 LEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYST 399

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I AF K G ++ A      M   G+  +  +Y +LI+  CK G L  A+ LL++M + G
Sbjct: 400 LIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAG 459

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T L+DGLCKAG +  A      M K G   N + Y  +V    K  +++ A+
Sbjct: 460 VKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAM 519

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKAVVDG 295
            + + M       D   Y S++   C  ++L   +KL+L  +KS G+         ++D 
Sbjct: 520 KILKQMTECNIKPDLILYGSIIWGHCSQRKL-EETKLILEEMKSRGISANPVISTTIIDA 578

Query: 296 LRHSGCRREA 305
              +G   +A
Sbjct: 579 YFKAGKSSDA 588



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 144/272 (52%), Gaps = 6/272 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   + N +L+ L K+       + F  +   G  P + TYN++I  LCK G L  +R +
Sbjct: 252 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 311

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ + G +P+ +TY +++    +    +    + + MK  G   D   Y  +I  + K
Sbjct: 312 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCK 371

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A +Y  +M  +G++ ++V+Y+TLI+ +CKEG ++ A  L  +M + G   +++T
Sbjct: 372 FEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFT 431

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LID  CKAGN+  A   L  M + G   N+  Y  ++D L K G++  A  VF SM 
Sbjct: 432 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM- 490

Query: 248 VKDSFT-----YSSMVHNLCKAKRLPSASKLL 274
           +KD  +     Y+++VH   KA+R+  A K+L
Sbjct: 491 LKDGISPNQQVYTALVHGYIKAERMEDAMKIL 522



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 140/307 (45%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++  CK      A ++   + + G    +VTY  L+ GLCKAGR+  A 
Sbjct: 425 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 484

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +   G +PN   YT ++    +  + +  ++IL  M       D   Y ++I   
Sbjct: 485 EVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGH 544

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               +L+E    +E+M + G+  + V   T+I+ Y K GK   A     EM+  G E   
Sbjct: 545 CSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATI 604

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ +LIDGLCKAG ++ A  +   M  +G   N+  Y  ++D L K+  I+ A  +F+ 
Sbjct: 605 VTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDE 664

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ +    D   +++++    K   L  A  L+    +  +        ++V G    G 
Sbjct: 665 MQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGE 724

Query: 302 RREAKKI 308
             +A+K 
Sbjct: 725 LHQARKF 731



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 120/246 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P    +  +++G  K    ++A+++ + + +    P+L+ Y  +I G C   +
Sbjct: 490 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRK 549

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L   + IL+E+   G + N +  TTI+   F+  K    L     M+  G       YC 
Sbjct: 550 LEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCV 609

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G ++ A DY  +M++ G+Q ++  Y +LI+  CK   +E+A  L DEM+ +G
Sbjct: 610 LIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRG 669

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D    T LIDG  K GN++ A + +  M ++  + +L  Y  +V    + G++  A 
Sbjct: 670 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 729

Query: 241 NVFESM 246
             F  M
Sbjct: 730 KFFNEM 735



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 86/177 (48%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ ++++GLCK    + A+  F  +   G  P +  Y  LI GLCK   + +A+ +  E
Sbjct: 605 VTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDE 664

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+   +T ++    ++   +  L ++S M      FD   Y ++++ F + G 
Sbjct: 665 MQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGE 724

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           L +A  +  +M+  G+  + V    L+  Y K G+L+ A  L +EME+ G   +  T
Sbjct: 725 LHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITESAT 781



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 78/155 (50%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           + +AL  F+ +Q  G    +VTY +LI GLCKAG +  A      +   G  PN   YT+
Sbjct: 585 SSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTS 644

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    +N   +   ++   M+ +G T D   +  +I   +K G L+EA   + +M    
Sbjct: 645 LIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELA 704

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ D+  Y +L++ + + G+L  A    +EM ++G
Sbjct: 705 IEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKG 739



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 35/145 (24%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV-------------- 46
           M+   L P  A +  +++GLCKN   ++A ++F  +Q  G  P++               
Sbjct: 630 MLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGN 689

Query: 47  ---------------------TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                                 Y  L+ G  + G L  AR    E+ + G  P  +    
Sbjct: 690 LQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCIC 749

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKG 110
           +++  ++  +    +E+ + M+R G
Sbjct: 750 LLREYYKRGQLDEAIELKNEMERMG 774


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 154/305 (50%), Gaps = 4/305 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +++ LCK R+ D+AL +F+ ++  G  P +VTY+ LI  LC  GR   A  +L ++ 
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +    PN +T+  ++    +  K+    ++   M ++    D F Y +++  F    RL 
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A    E MV+     D+V+YNTLI  +CK  ++E    L  EM  +G   D  T+T LI
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVK 249
            GL   G+   A+   + M   G   ++  Y+ ++D L  +GK++ A+ VF+ M   E+K
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 502

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D + Y++M+  +CKA ++     L  S    GV+        ++ GL      +EA  +
Sbjct: 503 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 562

Query: 309 QSKIR 313
             K++
Sbjct: 563 LKKMK 567



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 129/262 (49%), Gaps = 4/262 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TFN +++   K      A +++  + K    P++ TYN L+ G C   R
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 380

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      P+ +TY T++K   ++++ + G E+   M  +G   D   Y T
Sbjct: 381 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 440

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G    A    +QMV+DGV  DI++Y+ L++  C  GKLE A  + D M+K  
Sbjct: 441 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D Y +T +I+G+CKAG +         ++  G   N+  YN ++  L     +  A 
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 560

Query: 241 NVFESME----VKDSFTYSSMV 258
            + + M+    + +S TY++++
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLI 582



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NI++N  C+      AL +   + K G+ P +VT + L+ G C   R+  A  ++ ++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+ IT+TT++   F + K    + ++  M ++G   +   Y  V+    K G  
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++ D+V +NT+I+  CK   ++ A  L  EME +G   +  T++ L
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + NL  +N ++D   K+GK   A  +++ M  +  
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D FTY+S+V+  C   RL  A ++ 
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMF 388



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + +LNG C  +   +A+ +   + + G+ P+ +T+  LI GL    +   A  +
Sbjct: 153 PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 212

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G  PN +TY  ++    +     L L +L+ M+      D   + T+I +  K
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A +  ++M T G++ ++V+Y++LI+  C  G+   A  LL +M ++    +  T
Sbjct: 273 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 332

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LID   K G    A    + M K   D ++  YN +V+      ++D A  +FE M 
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 392

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            KD F    TY++++   CK+KR+   ++L       G+         ++ GL H G   
Sbjct: 393 SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 452

Query: 304 EAKKI 308
            A+K+
Sbjct: 453 NAQKV 457



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 148/314 (47%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  +++GL  +     A+ +   + + G  P LVTY +++ GLCK G    A  +
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL 247

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++  +    + + + TI+    + R     L +   M+ KG   +   Y ++I+    
Sbjct: 248 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 307

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V++N LI+ + KEGK   A  L D+M K+  + D +T
Sbjct: 308 YGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT 367

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++G C    +  A+   E+M       ++  YN ++    K  +++    +F  M 
Sbjct: 368 YNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMS 427

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D+ TY++++  L       +A K+    +  GV         ++DGL ++G   
Sbjct: 428 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487

Query: 304 EAKKIQSKIRMAKI 317
           +A ++   ++ ++I
Sbjct: 488 KALEVFDYMQKSEI 501



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 1/239 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   T+N ++ G CK++  ++   +FR +   G V + VTY  LI+GL   G 
Sbjct: 391 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 450

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ + K++   G  P+ +TY+ ++     N K +  LE+   M++     D + Y T
Sbjct: 451 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 510

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++ +  D    +   GV+ ++V+YNT+I+  C +  L+ AY LL +M++ G
Sbjct: 511 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 570

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  T+  LI    + G+   +   +  M    F  +      + + L  DG++D +
Sbjct: 571 PLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDKS 628



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 39/305 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +L+ + K +  D  + +   +Q+   V  L TYNILI   C+  ++  A  +
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+ +T ++++      ++    + ++  M   GY  D   + T+I     
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +  EA   +++MV  G Q ++V+Y  ++N  CK G  + A  LL++ME    E D   
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              +ID LCK  +                                   +D A+N+F+ ME
Sbjct: 263 FNTIIDSLCKYRH-----------------------------------VDDALNLFKEME 287

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    +  TYSS++  LC   R   AS+LL   ++  +        A++D     G   
Sbjct: 288 TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV 347

Query: 304 EAKKI 308
           EA+K+
Sbjct: 348 EAEKL 352



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 127/308 (41%), Gaps = 40/308 (12%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           I+ NGL  +   D+A+ +F G+ K   +P +V +N L+  + K  +      + +++   
Sbjct: 56  ILRNGL-HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL 114

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
                  TY  ++ C  R  +  L L +L  M + GY                       
Sbjct: 115 EIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGY----------------------- 151

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
                       +  IV+ ++L+N YC   ++  A  L+D+M + G+  D  T T LI G
Sbjct: 152 ------------EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
           L        A   ++ M + G   NL  Y  +V+ L K G  D A+N+   ME      D
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD 259

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
              +++++ +LCK + +  A  L       G+R       +++  L   G   +A ++ S
Sbjct: 260 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 319

Query: 311 KIRMAKIS 318
            +   KI+
Sbjct: 320 DMIEKKIN 327



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M++GLC  R    A  + + +++ G +P   TYN LI+   + G    +  +
Sbjct: 538 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAEL 597

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           ++E+       +A T   +       R  K  L++LS
Sbjct: 598 IREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 634


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 159/350 (45%), Gaps = 39/350 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF+ ++NGLC       AL +   + + G  P+L+T N L+ GLC +G+   A  +
Sbjct: 254 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 313

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++ + G  PNA+TY  ++    ++ +  L +E+L  M+ +    D   Y  +I    K
Sbjct: 314 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 373

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-------------------------- 161
            G L  A +   +M   G+  +I++YN LI  +C                          
Sbjct: 374 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 433

Query: 162 ---------KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                    KEGKL  A  L  EM  +G   D  T+T LIDG CK  ++  A   ++ M 
Sbjct: 434 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 493

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G D N+  +N +++   K  +ID  + +F  M     V D+ TY++++   C+  +L 
Sbjct: 494 SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN 553

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A +L    +   V       K ++DGL  +G   +A +I  KI  +K+ 
Sbjct: 554 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKME 603



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 148/305 (48%), Gaps = 4/305 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++I+++GLCK+   DNA  +F  ++  G    ++TYNILI G C AGR      +L+++ 
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                PN +T++ ++    +  K +   E+   M  +G   D   Y ++I  F K   L 
Sbjct: 424 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 483

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   ++ MV+ G   +I ++N LIN YCK  +++    L  +M  +G   D  T+  LI
Sbjct: 484 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 543

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            G C+ G +  A+   + M       N+  Y  ++D L  +G+ + A+ +FE +E     
Sbjct: 544 QGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKME 603

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D   Y+ ++H +C A ++  A  L  S    GV+        ++ GL   G   EA+ +
Sbjct: 604 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELL 663

Query: 309 QSKIR 313
             K+ 
Sbjct: 664 FRKME 668



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +T    T+NI++ G C     D+  ++ R + K    P +VT+++LI    K G+LR A 
Sbjct: 392 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 451

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+   G AP+ ITYT+++    +        +++  M  KG   +   +  +I  +
Sbjct: 452 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 511

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ +  +   +M   GV  D V+YNTLI  +C+ GKL  A  L  EM  +    + 
Sbjct: 512 CKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNI 571

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ IL+DGLC  G  + A    E + K   + ++  YN I+  +    K+D A ++F S
Sbjct: 572 VTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS 631

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           + +K       TY+ M+  LCK   L  A  L 
Sbjct: 632 LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 664



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 112/233 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFNI++NG CK    D+ L +FR +   G V + VTYN LI+G C+ G+
Sbjct: 492 MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 551

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + +E+      PN +TY  ++     N + +  LEI   +++     D   Y  
Sbjct: 552 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 611

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I       ++ +A D    +   GV+  + +YN +I   CK+G L  A LL  +ME+ G
Sbjct: 612 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 671

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
              D +T+ ILI      G+   +   +E + + GF  +      ++D L  D
Sbjct: 672 HAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDD 724



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+++++   K      A  + + +   G  P+ +TY  LI G CK   
Sbjct: 422 MIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENH 481

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++  +   G  PN  T+  ++    +  +   GLE+   M  +G   D   Y T
Sbjct: 482 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 541

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F ++G+L  A +  ++MV+  V  +IV+Y  L++  C  G+ E A  + +++EK  
Sbjct: 542 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 601

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D   + I+I G+C A  +  A      +   G    ++ YN ++  L K G +  A 
Sbjct: 602 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAE 661

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  ME      D +TY+ ++           + KL+    + G  +  S  K V+D L
Sbjct: 662 LLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 721



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 142/290 (48%), Gaps = 4/290 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +FR +     +P ++ ++ L   + K  +      + K++   G A N  T + +
Sbjct: 168 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 227

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R RK  L    +  + + GY  +   + T+I      GR+ EA + +++MV  G 
Sbjct: 228 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 287

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + D+++ NTL+N  C  GK   A LL+D+M + G + +  T+  +++ +CK+G    A  
Sbjct: 288 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAME 347

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L  M +     +   Y+ I+D L K G +D+A N+F  ME+K    +  TY+ ++   C
Sbjct: 348 LLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC 407

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            A R    +KLL   +K  +         ++D     G  REA+++  ++
Sbjct: 408 NAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 457



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 6/301 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    F+ + + + K +  D  L + + ++  G    L T +I+I   C+  +
Sbjct: 177 MIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRK 236

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A   + ++   G+ PN IT++T++   C   R  +  LE++  M   G+  D     
Sbjct: 237 LCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE-ALELVDRMVEMGHKPDLITIN 295

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++      G+  EA   +++MV  G Q + V+Y  ++N+ CK G+   A  LL +ME++
Sbjct: 296 TLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEER 355

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             + D   ++I+IDGLCK G++  A      M   G  +N+  YN ++      G+ D  
Sbjct: 356 NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDG 415

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M  +    +  T+S ++ +  K  +L  A +L    +  G+        +++DG
Sbjct: 416 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 475

Query: 296 L 296
            
Sbjct: 476 F 476



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 109/252 (43%), Gaps = 31/252 (12%)

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +++  S   P  I ++ +     + ++Y L L +   M+ KG   + +    +I  F 
Sbjct: 173 LFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFC 232

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  +L  A   M +++  G + + ++++TLIN  C EG++  A  L+D M + G + D  
Sbjct: 233 RCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLI 292

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   L++GLC +G    A L ++ M + G   N                           
Sbjct: 293 TINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPN--------------------------- 325

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
               + TY  +++ +CK+ +   A +LL    +  +++       ++DGL   G    A 
Sbjct: 326 ----AVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAF 381

Query: 307 KIQSKIRMAKIS 318
            + +++ M  I+
Sbjct: 382 NLFNEMEMKGIT 393


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 142/261 (54%), Gaps = 1/261 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    F  +++  CK    +  + +++ ++  G +P+LV YN L+ GLC+A  L+ A 
Sbjct: 286 VNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAE 345

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I++E+ ++G  P+ +TYTT++  C ++ K  + ++I   M  K  + D   Y  +I+  
Sbjct: 346 SIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGL 405

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR  +A   + +M+   ++ D  +Y  +I+ +C++G ++  + LL EM+ +G +   
Sbjct: 406 SKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGV 465

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ ++++GLCK G +K A + L  M  IG   +   YN ++D   K GK+ ++  +  S
Sbjct: 466 VTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELESS 525

Query: 246 M-EVKDSFTYSSMVHNLCKAK 265
              V D   Y+S++  L K K
Sbjct: 526 KGMVPDFAVYTSLISELAKKK 546



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 154/309 (49%), Gaps = 4/309 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN +++G+C+ R  D    +++ +   G  P++ TY  LIKG C+ GR+  A 
Sbjct: 216 VQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAV 275

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PNA+ +TT++    +      G+++   M+ +G   D   Y  ++   
Sbjct: 276 KMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGL 335

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +   LK A   +E+M   G++ D V+Y TLI+  CK+GKL+ A  +  +M ++    D+
Sbjct: 336 CRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDE 395

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI GL KAG    A   L  M +   + +   Y  ++D   + G +     + + 
Sbjct: 396 VTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKE 455

Query: 246 MEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ K       TY+ +++ LCK  ++ +A  LL + L  GV         ++DG    G 
Sbjct: 456 MQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGK 515

Query: 302 RREAKKIQS 310
              +++++S
Sbjct: 516 VANSEELES 524



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 132/282 (46%), Gaps = 9/282 (3%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           T  A   +  L   G  PE   +N+L++   + G L +AR +  E+  S   P  +T+ T
Sbjct: 167 TPEAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSVQ-PTVVTFNT 225

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    R R       +   M   G   D + Y  +I  F + GR++ A     +M   G
Sbjct: 226 LISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTG 285

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V  + V + TLI+ +CKEG + A   L  +M  +G   D   +  L++GLC+A N+K A 
Sbjct: 286 VNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAE 345

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
             +E M   G   +   Y  ++D   KDGK+D A+++ + M  K    D  TY++++  L
Sbjct: 346 SIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGL 405

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            KA R   A ++L   +++ +    +    V+D      CR+
Sbjct: 406 SKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAF----CRK 443



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 5/198 (2%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           FV++G L  A    ++M    VQ  +V++NTLI+  C+   L+A   L  EM   G + D
Sbjct: 196 FVRLGELVSARKVFDEM-RRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPD 254

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT+  LI G C+ G ++ A      M   G + N   +  ++D   K+G ++  +++++
Sbjct: 255 VYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQ 314

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M V+    D   Y+++V+ LC+A+ L +A  ++     +G++  K     ++DG    G
Sbjct: 315 DMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDG 374

Query: 301 CRREAKKIQSKIRMAKIS 318
               A  I+ K+   ++S
Sbjct: 375 KLDMAMDIKQKMAEKEVS 392


>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 557

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 155/309 (50%), Gaps = 13/309 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    F  +++G  K    D A ++++ + K   +P + TY  LI G CK G L  A 
Sbjct: 107 IVPNLIAFTCLIDGYSKIGNLDFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAE 166

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W   ++ + G  PN+  YT+I+   F+     + ++  S M+++ +  D   Y  VI+  
Sbjct: 167 WFFLKMLEVGIMPNSTVYTSIIDGHFKKGNIDVAMKYFSEMRKESFRLDIVAYGVVISGL 226

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           V  GRL +  + ME MV +G+  D V   TL++ + K G  +AAY +  E+  +GFE D 
Sbjct: 227 VNNGRLDKVLEVMEDMVRNGLAPDKVVLTTLMHAHFKAGNTKAAYGVYRELLNRGFEPDA 286

Query: 186 YTHTILIDGLCKAGNIKGARLHL--EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
            T + LIDGLCK G    A+ +   E  N++       +Y  ++D + K+G +D    V 
Sbjct: 287 VTISSLIDGLCKDGRYHDAKGYFCKEKANEV-------SYTALIDGICKEGNLDEVERVV 339

Query: 244 ----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
               ES  V D F Y+S +  LC+  ++  A K+    ++ G+ +      +++ GL + 
Sbjct: 340 MEMSESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSLIFGLANK 399

Query: 300 GCRREAKKI 308
           G   EAK++
Sbjct: 400 GLMIEAKQL 408



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 130/278 (46%), Gaps = 6/278 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P +  +  +++G  K    D A++ F  ++K  F  ++V Y ++I GL   GRL    
Sbjct: 177 IMPNSTVYTSIIDGHFKKGNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVL 236

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++++  +G AP+ +  TT+M   F+    K    +   +  +G+  D     ++I   
Sbjct: 237 EVMEDMVRNGLAPDKVVLTTLMHAHFKAGNTKAAYGVYRELLNRGFEPDAVTISSLIDGL 296

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR  +A  Y  +      + + VSY  LI+  CKEG L+    ++ EM + GF  DK
Sbjct: 297 CKDGRYHDAKGYFCKE-----KANEVSYTALIDGICKEGNLDEVERVVMEMSESGFVPDK 351

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + +T  I  LC+ G I  A      M + G D +L  Y+ ++  L   G +  A  +F+ 
Sbjct: 352 FVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMIEAKQLFDD 411

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M +K      SMV ++     L   + + +S L   +R
Sbjct: 412 M-LKRGIIPDSMVFDILIRGYLKQDNPVAISHLHEEMR 448



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 136/316 (43%), Gaps = 5/316 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++G CK    + A    + ++      +LV++N L  G CK  +++   +I
Sbjct: 5   PDIVTYNSLIDGYCKYGQVEEACLTIKRIRNAECRVDLVSFNALFNGFCKR-KMKEEVFI 63

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              L      PN ITY T +    +      G +    M++ G   +   +  +I  + K
Sbjct: 64  YMGLMWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGYSK 123

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG L  A    + M       ++ +Y  LIN +CK G LE A     +M + G   +   
Sbjct: 124 IGNLDFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNSTV 183

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +IDG  K GNI  A  +   M K  F  ++ AY  ++  L  +G++D  + V E M 
Sbjct: 184 YTSIIDGHFKKGNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMV 243

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D    ++++H   KA    +A  +    L  G         +++DGL   G   
Sbjct: 244 RNGLAPDKVVLTTLMHAHFKAGNTKAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRYH 303

Query: 304 EAKKIQSKIRMAKISH 319
           +AK    K +  ++S+
Sbjct: 304 DAKGYFCKEKANEVSY 319



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G +P++VTYN LI G CK G++  A   +K + ++    + +++  +    F  RK K  
Sbjct: 2   GSLPDIVTYNSLIDGYCKYGQVEEACLTIKRIRNAECRVDLVSFNALFN-GFCKRKMKEE 60

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           + I   +  K    +   Y T I    K+G L     + ++M  DG+  +++++  LI+ 
Sbjct: 61  VFIYMGLMWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDG 120

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           Y K G L+ AY L  +M K     + YT+  LI+G CK G ++ A      M ++G   N
Sbjct: 121 YSKIGNLDFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPN 180

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLL 274
              Y  I+D   K G ID A+  F  M  K+SF      Y  ++  L    RL    +++
Sbjct: 181 STVYTSIIDGHFKKGNIDVAMKYFSEMR-KESFRLDIVAYGVVISGLVNNGRLDKVLEVM 239

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHS 299
              +++G+    +  K V+  L H+
Sbjct: 240 EDMVRNGL----APDKVVLTTLMHA 260



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 8/211 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P       +++   K   T  A  ++R L   GF P+ VT + LI GLCK GR
Sbjct: 242 MVRNGLAPDKVVLTTLMHAHFKAGNTKAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGR 301

Query: 61  LRTAR-WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
              A+ +  KE        N ++YT ++    +         ++  M   G+  D F Y 
Sbjct: 302 YHDAKGYFCKE------KANEVSYTALIDGICKEGNLDEVERVVMEMSESGFVPDKFVYT 355

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           + IA   + G++ EA     +MV +G+ LD+++Y++LI     +G +  A  L D+M K+
Sbjct: 356 SWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMIEAKQLFDDMLKR 415

Query: 180 GFECDKYTHTILIDGLCKAGN-IKGARLHLE 209
           G   D     ILI G  K  N +  + LH E
Sbjct: 416 GIIPDSMVFDILIRGYLKQDNPVAISHLHEE 446



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 13/179 (7%)

Query: 6   LTPCTATFNIMLNGLCKN-RYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRL 61
             P   T + +++GLCK+ RY D          K  F  E    V+Y  LI G+CK G L
Sbjct: 282 FEPDAVTISSLIDGLCKDGRYHD---------AKGYFCKEKANEVSYTALIDGICKEGNL 332

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
                ++ E+ +SG  P+   YT+ +    R  K     ++ + M  +G   D   Y ++
Sbjct: 333 DEVERVVMEMSESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSL 392

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           I      G + EA    + M+  G+  D + ++ LI  Y K+    A   L +EM ++G
Sbjct: 393 IFGLANKGLMIEAKQLFDDMLKRGIIPDSMVFDILIRGYLKQDNPVAISHLHEEMRRRG 451


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 138/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ GLCK  Y  +A  +   +Q  G  P ++TY ILI   CK GRL  AR +
Sbjct: 12  PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G A NA+ Y  ++    ++ K +  L +   M  KG   D F + ++I    K
Sbjct: 72  LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 131

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + + +EA    + M+ +GV  + ++YNTLI+ + + G ++ A  L+++M  +G   D  T
Sbjct: 132 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 191

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +  LI  LC+AGNI+      E M   G + N  + N +++ L + G I HA+     M 
Sbjct: 192 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 251

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
                 D  TY+S+++ LCK  R   A  L 
Sbjct: 252 HRGLTPDIVTYNSLINGLCKTGRAQEALNLF 282



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 108/227 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLCK    + AL +++ +   G +   +TYN LI    + G ++ A  +
Sbjct: 117 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 176

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G   + ITY  ++K   R    + GL +   M  KG   +      +I    +
Sbjct: 177 VNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 236

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A +++  M+  G+  DIV+YN+LIN  CK G+ + A  L D+++ +G   D  T
Sbjct: 237 TGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAIT 296

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +  LI   CK G    A L L      GF  N   +  +V    K+G
Sbjct: 297 YNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 343



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 97/191 (50%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N +++   +      AL++   +   G   + +TYN LIK LC+AG +     + +
Sbjct: 154 TITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFE 213

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G  PN I+   ++    R    +  LE L  M  +G T D   Y ++I    K G
Sbjct: 214 DMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTG 273

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R +EA +  +++  +G+  D ++YNTLI+ +CKEG  + A+LLL      GF  ++ T  
Sbjct: 274 RAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWY 333

Query: 190 ILIDGLCKAGN 200
           IL+    K G+
Sbjct: 334 ILVSNFIKEGD 344



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   + NI++NGLC+     +AL   R +   G  P++VTYN LI GLCK GR
Sbjct: 215 MMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGR 274

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +  +L   G  P+AITY T++    +   +     +LS     G+  +   +  
Sbjct: 275 AQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYI 334

Query: 121 VIAAFVKIG 129
           +++ F+K G
Sbjct: 335 LVSNFIKEG 343


>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 148/301 (49%), Gaps = 4/301 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ GL K   T+ A R+ + +   G +P+++TYN+L+ GLCK G L+TA  +L E+  SG
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSG 230

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+AITY TI++C F +  +   +       RKG       Y  +I    K     +A 
Sbjct: 231 CPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAM 290

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + +E M  +G   DIV+YN+L+N  CK+GK E   L++  +   G   +  T+  L+  L
Sbjct: 291 EVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSL 350

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDS 251
           C  G        L  MN       +  YN +++ L K G +D AIN F+ M     + D 
Sbjct: 351 CTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDI 410

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
            TY++++  LCK   +  A  LL S   +           V+DGL   GC  +A ++  +
Sbjct: 411 ITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGE 470

Query: 312 I 312
           +
Sbjct: 471 M 471



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 116/283 (40%), Gaps = 35/283 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ +++  +CK+  T  A+ +   +   G  P++VTYN L+   CK G+      I+  L
Sbjct: 272 TYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNL 331

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN +TY T++     +  +    EIL  M           Y  +I    K G L
Sbjct: 332 LSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLL 391

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD----------------- 174
             A ++ +QMV+     DI++YNTL+   CKEG ++ A  LL                  
Sbjct: 392 DRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIV 451

Query: 175 ------------------EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
                             EM ++GF  D  TH  L  GL +   ++ A + L+ MNK   
Sbjct: 452 IDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQ 511

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVH 259
                A+  ++  L   G I+ A  + + +     F   +M H
Sbjct: 512 RIKNSAFRFVIHGLCAAGMIEEANQLHQKLTELKVFREETMPH 554



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI++NGLCK    D A+  F  +  H  +P+++TYN L+  LCK G +  A  +
Sbjct: 373 PTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHL 432

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  L D+  +P  ITY  ++    +    +  +E+   M  +G+  D   + T+     +
Sbjct: 433 LHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFR 492

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           +  +++A   +++M     ++   ++  +I+  C  G +E A
Sbjct: 493 LDLVEDALVILKEMNKRNQRIKNSAFRFVIHGLCAAGMIEEA 534



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+N +L  LCK    D AL +   L      P L+TYNI+I GL K G 
Sbjct: 401 MVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGC 460

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ + G AP+ IT+ T+    FR    +  L IL  M ++        +  
Sbjct: 461 MEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFRF 520

Query: 121 VIAAFVKIGRLKEATDYMEQM 141
           VI      G ++EA    +++
Sbjct: 521 VIHGLCAAGMIEEANQLHQKL 541


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 157/317 (49%), Gaps = 5/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NIM++ +CK    + A  +F  ++  G +P+ VTYN +I G  K GR
Sbjct: 86  MIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGR 145

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L       +E+ D    P+ ITY  ++ C  +  K   GLE    MKR G   +   Y T
Sbjct: 146 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYST 205

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K G +++A  +   M   G+  +  +Y +LI+ YCK G L  A+ L +EM + G
Sbjct: 206 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVG 265

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+T LIDGLC   N       L+ M ++     +  +  ++D L K+  +  AI
Sbjct: 266 VEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAI 325

Query: 241 NVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + F  +        ++  Y++M+  LCK  ++ +A+ L     + G+   ++A  +++DG
Sbjct: 326 DYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDG 385

Query: 296 LRHSGCRREAKKIQSKI 312
               G   EA  ++ K+
Sbjct: 386 NFKQGNVLEALALRDKM 402



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 132/293 (45%), Gaps = 39/293 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T + N +L+   K   TD   R F+ +   G  P + TYNI+I  +CK G +  AR +
Sbjct: 58  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGL 117

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  P+ +TY +++                          DGFG         K
Sbjct: 118 FEEMKFRGLIPDTVTYNSMI--------------------------DGFG---------K 142

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GRL +   + E+M     + D+++YN LIN +CK GKL        EM++ G + +  +
Sbjct: 143 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVS 202

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ESM 246
           ++ L+D  CK G ++ A      M ++G   N   Y  ++D   K G +  A  +  E +
Sbjct: 203 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEML 262

Query: 247 EVKDSF---TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +V   +   TY++++  LC  +       LL   ++  +++       ++DGL
Sbjct: 263 QVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGL 315



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 5/244 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +++ +++  CK      A++ +  +++ G VP   TY  LI   CK G L  A 
Sbjct: 196 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAF 255

Query: 66  WILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            +  E+   G   N +TYT ++   C + N     GL +L  M           +C +I 
Sbjct: 256 RLANEMLQVGVEWNVVTYTALIDGLCGWENPTE--GLHLLDEMVELDIKVTVVTFCVLID 313

Query: 124 AFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
              K   + +A DY  ++  D G+Q +   Y  +I+  CK  ++EAA  L ++M ++G  
Sbjct: 314 GLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLV 373

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D+  +T L+DG  K GN+  A    + M + G   +L AY  +V  L    ++  A + 
Sbjct: 374 PDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSF 433

Query: 243 FESM 246
            E M
Sbjct: 434 LEEM 437



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 5/204 (2%)

Query: 115 GFG-YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           GFG +  + +  + +G ++EA     +M    V     S N L++ + K GK +      
Sbjct: 24  GFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFF 83

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            +M   G +   +T+ I+ID +CK G+++ AR   E M   G   +   YN ++D  GK 
Sbjct: 84  KDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKV 143

Query: 234 GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G++D  +  FE M+      D  TY+++++  CK  +LP   +      ++G++    + 
Sbjct: 144 GRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSY 203

Query: 290 KAVVDGLRHSGCRREAKKIQSKIR 313
             +VD     G  ++A K    +R
Sbjct: 204 STLVDAFCKEGMMQQAIKFYVDMR 227



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 1/152 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELVTYNILIKGLCKAG 59
           M+  D+     TF ++++GLCKN+    A+  F R     G       Y  +I GLCK  
Sbjct: 296 MVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGN 355

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           ++  A  + +++   G  P+   YT++M   F+       L +   M   G   D   Y 
Sbjct: 356 QVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYT 415

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           +++       +L++A  ++E+M+ +G+  D V
Sbjct: 416 SLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 447


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 150/316 (47%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NG CK      AL +F  L++ G  P ++TYNIL+ G C+ G L  AR
Sbjct: 368 LLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEAR 427

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+ + G  P+  TYT +M    + R   +  E    M  KG   D F Y T I+A 
Sbjct: 428 RFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAE 487

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           + +G   EA    E M++ G+  D V+YN  ++  CK G L+ AY+L  +M   G + D 
Sbjct: 488 LILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDC 547

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI   C+ G ++ AR   + M   G   +   Y   +    + G +  A   F+ 
Sbjct: 548 ITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQK 607

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    +  TY+ ++H LC+  R   A +     L+ G+   K     ++DG    G 
Sbjct: 608 MLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGN 667

Query: 302 RREAKKIQSKIRMAKI 317
             EA ++ S++    I
Sbjct: 668 WEEAIRLYSEMHQHGI 683



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 3/247 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +N  ++       T  A ++   +   G   + VTYNI + GLCK+G 
Sbjct: 468 MLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGN 527

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +  ++   G  P+ ITYT ++       + +   +I   M   G       Y  
Sbjct: 528 LKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTV 587

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I A+ + G L  A  + ++M+ +GV+ + V+YN LI+  C+ G+   AY    EM ++G
Sbjct: 588 FIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERG 647

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +KYT+T+LIDG CK GN + A RL+ E M++ G   +   +N +      +G+  HA
Sbjct: 648 LSPNKYTYTLLIDGNCKEGNWEEAIRLYSE-MHQHGIHPDHCTHNALFKGF-DEGQSKHA 705

Query: 240 INVFESM 246
           I   E++
Sbjct: 706 IQYMENV 712



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 151/372 (40%), Gaps = 77/372 (20%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMF-----------------------RG----- 35
           G   P   T+N+++NGL +    + A ++                        RG     
Sbjct: 262 GGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKA 321

Query: 36  ------LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
                 ++  G VP +VTYN +I G+ ++G +  AR    E+   G  P+ ITY +++  
Sbjct: 322 GALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLING 381

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA--------------- 134
             +    K  L +   +KR G       Y  ++  + ++G L+EA               
Sbjct: 382 YCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPD 441

Query: 135 --------------------TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
                                ++ ++M++ G+Q D  +YNT I+     G    A+ L +
Sbjct: 442 VSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTE 501

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            M  +G   D  T+ I +DGLCK+GN+K A +    M   G   +   Y C++    + G
Sbjct: 502 VMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERG 561

Query: 235 KIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           ++  A ++F+ M V      + TY+  +H  C+   L SA       L+ GVR      +
Sbjct: 562 RLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVR----PNE 617

Query: 291 AVVDGLRHSGCR 302
              + L H+ CR
Sbjct: 618 VTYNVLIHALCR 629



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 141/313 (45%), Gaps = 7/313 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH--GFVPELVTYNILIKGLCKAGRLRT 63
           + P   T+N +L+   +    D A ++ R ++    G +P  VTYN++I GL + G L  
Sbjct: 227 IEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEK 286

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  ++  +  S  A +A T+  ++   F     +    +   M+ +G       Y T+I 
Sbjct: 287 AAQLVDRMRMSKKA-SAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIH 345

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + G ++ A     +M   G+  D+++YN+LIN YCK G L+ A  L  ++++ G   
Sbjct: 346 GMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAP 405

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              T+ IL+DG C+ G+++ AR   + M + G   ++  Y  +++   K   +      F
Sbjct: 406 SVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFF 465

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M  K    D F Y++ +           A +L    +  G+          +DGL  S
Sbjct: 466 DEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKS 525

Query: 300 GCRREAKKIQSKI 312
           G  ++A  +  K+
Sbjct: 526 GNLKDAYVLWMKM 538



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 130/284 (45%), Gaps = 7/284 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P     N++L  L      D+   ++  + + G  P +VTYN L+    + GR+  A 
Sbjct: 192 VPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAA 251

Query: 66  WILKELG--DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            +L+E+     G  P+ +TY  ++    R  + +   +++  M R       F +  +I 
Sbjct: 252 KLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKASAFTFNPLIT 310

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            +   G +++A     +M  +G+   +V+YNT+I+   + G +EAA +   EM   G   
Sbjct: 311 GYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLP 370

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  LI+G CKAGN+K A      + + G   ++  YN ++D   + G ++ A    
Sbjct: 371 DLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFK 430

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           + M  +    D  TY+ +++   K + L    +     L  G++
Sbjct: 431 QEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQ 474



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 122/274 (44%), Gaps = 7/274 (2%)

Query: 30  LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
           L  FR +  HG  P +   N++++ L    R    R +  E+   G  P+ +TY T++  
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDS 240

Query: 90  CFRNRKYKLGLEILSAMKRK--GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
            FR  +     ++L  M+ +  G       Y  VI    + G L++A   +++M     +
Sbjct: 241 FFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSK-K 299

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
               ++N LI  Y   G +E A  L  EME +G      T+  +I G+ ++GN++ AR+ 
Sbjct: 300 ASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMK 359

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
              M  +G   +L  YN +++   K G +  A+ +F  ++         TY+ ++   C+
Sbjct: 360 FVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCR 419

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
              L  A +     ++ G +   S    +++G R
Sbjct: 420 LGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSR 453


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 127/242 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   ++  G  P++ TY++LI GLCK  R+  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L ++I   M  +G++ D   Y T+I   
Sbjct: 227 GLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A   +++M   G++ D ++Y TLI+  CKEG LE A+ L + M K+    D 
Sbjct: 287 CKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M ++G   + E Y  I++   K G +  A  +   
Sbjct: 347 VVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLRE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 137/272 (50%), Gaps = 4/272 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 VLEHLMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    +      G  + +AM+  G   D + Y  +I    K  R+ EA 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
               +M+ +G+  + V++ TLI+ +CK G+L+ A  +  +M  QGF  D  T+  LI GL
Sbjct: 227 GLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G++K AR  L+ M++ G   +   Y  ++D   K+G ++ A  + E M  +    D 
Sbjct: 287 CKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDD 346

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             Y++++  LC+  R   A K+L   L+ G++
Sbjct: 347 VVYTALIFGLCQEGRAVDAEKMLREMLRVGLK 378



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 114/215 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  I +++ + G +P+ +TY T++    +    K    +L  M RKG   D   Y T
Sbjct: 257 LDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +  E+M+ + ++LD V Y  LI   C+EG+   A  +L EM + G
Sbjct: 317 LIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            + D  T+T++++  CK G++K A   L  M + G
Sbjct: 377 LKPDDETYTMIMNEFCKKGDVKKASELLREMQRNG 411



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  FR  +KH F     T   +++ L K    +      KE+ 
Sbjct: 69  FSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEIL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE +++ A  L  EM   G   +  T T LI
Sbjct: 189 EGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A      M   GF  ++  YN ++  L K G +  A  + + M  K   
Sbjct: 249 DGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +L    +K  +R+      A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKM 368



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  ++ GLC+     +A +M R + + G  P+  TY +++   CK G ++ A  +L+E
Sbjct: 347 VVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLRE 406

Query: 71  LGDSGHAPNAIT 82
           +  +G  P  +T
Sbjct: 407 MQRNGRVPCVVT 418


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 155/309 (50%), Gaps = 4/309 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+NI++ G C     D AL +F  ++  G +P +VTYN LI G CK  +
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L+ +   G  PN I+Y  ++    R  + K    +L+ M R+GY+ D   Y T
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 315

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G   +A     +M+  G+   +++Y +LI+  CK G +  A   LD+M  +G
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++ T+T L+DG  + G +  A   L  MN  GF  ++  YN +++     GK++ AI
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V E M+ K    D  +YS+++   C++  +  A ++    ++ G++       +++ G 
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495

Query: 297 RHSGCRREA 305
                 +EA
Sbjct: 496 CEQRRTKEA 504



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 154/322 (47%), Gaps = 19/322 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G  +  Y + A R+ R +  +GF P +VTYN LI G C  G++  A 
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+++ + G +P+ ++Y+T++    R+      L +   M  KG   D   Y ++I  F
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R KEA D  E+M+  G+  D  +Y  LIN YC EG LE A  L +EM ++G   D 
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555

Query: 186 YTHTILIDGLCKAGNIKGAR---LHLEYMNKIGFD----------SNLEAYNCI--VDRL 230
            T+++LI+GL K    + A+   L L Y   +  D          SN+E  + +  +   
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGF 615

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
              G +  A  VFESM  K    D   Y+ M+H  C+A  +  A  L    +KSG  +  
Sbjct: 616 CMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHT 675

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
               A+V  L   G   E   +
Sbjct: 676 VTVIALVKALHKEGKVNELNSV 697



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 5/310 (1%)

Query: 8   PCTATFNIMLNGLCKN-RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   ++N +L+   ++ R    A  +F+ + +    P + TYNILI+G C AG +  A  
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALT 226

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  ++   G  PN +TY T++    + RK   G ++L +M  KG   +   Y  VI    
Sbjct: 227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLC 286

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR+KE +  + +M   G  LD V+YNTLI  YCKEG    A ++  EM + G      
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVI 346

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LI  +CKAGN+  A   L+ M   G   N   Y  +VD   + G ++ A  V   M
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                     TY+++++  C   ++  A  +L    + G+     +   V+ G   S   
Sbjct: 407 NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDV 466

Query: 303 REAKKIQSKI 312
            EA +++ ++
Sbjct: 467 DEALRVKREM 476



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 155/312 (49%), Gaps = 6/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N+++NGLC+         +   + + G+  + VTYN LIKG CK G    A 
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P+ ITYT+++    +       +E L  M+ +G   +   Y T++  F
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA   + +M  +G    +V+YN LIN +C  GK+E A  +L++M+++G   D 
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +++ ++ G C++ ++  A R+  E + K G   +   Y+ ++    +  +   A +++E
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKREMVEK-GIKPDTITYSSLIQGFCEQRRTKEACDLYE 509

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       D FTY+++++  C    L  A +L    ++ GV         +++GL    
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569

Query: 301 CRREAKKIQSKI 312
             REAK++  K+
Sbjct: 570 RTREAKRLLLKL 581



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 136/265 (51%), Gaps = 6/265 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+  +++ +CK    + A+     ++  G  P   TY  L+ G  + G 
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+E+ D+G +P+ +TY  ++       K +  + +L  MK KG + D   Y T
Sbjct: 396 MNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V++ F +   + EA     +MV  G++ D ++Y++LI  +C++ + + A  L +EM + G
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D++T+T LI+  C  G+++ A +LH E + K G   ++  Y+ +++ L K  +   A
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK-GVLPDVVTYSVLINGLNKQSRTREA 574

Query: 240 ----INVFESMEVKDSFTYSSMVHN 260
               + +F    V    TY +++ N
Sbjct: 575 KRLLLKLFYEESVPSDVTYHTLIEN 599



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 9/209 (4%)

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR-LKEATDYMEQMVTDGVQLDIVSYNTLI 157
            L I+   +  G+      Y  V+ A ++  R +  A +  ++M+   V  ++ +YN LI
Sbjct: 153 ALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILI 212

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
             +C  G ++ A  L D+ME +G   +  T+  LIDG CK   I      L  M   G +
Sbjct: 213 RGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLE 272

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
            NL +YN +++ L ++G++     V   M  +    D  TY++++   CK      A  +
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
               L+ G+    +        L HS C+
Sbjct: 333 HAEMLRHGL----TPSVITYTSLIHSMCK 357



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 15/196 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI-------- 52
           M+   + P   T+++++NGL K   T  A R+   L     VP  VTY+ LI        
Sbjct: 546 MVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF 605

Query: 53  -------KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
                  KG C  G +  A  + + +    H P+   Y  ++    R    +    +   
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M + G+         ++ A  K G++ E    +  ++      +      L+ +  +EG 
Sbjct: 666 MVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGN 725

Query: 166 LEAAYLLLDEMEKQGF 181
           ++    +L EM K GF
Sbjct: 726 MDVVLDVLAEMAKDGF 741



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 50/110 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +NIM++G C+      A  +++ + K GF+   VT   L+K L K G++     +
Sbjct: 638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSV 697

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
           +  +  S     A     +++   R     + L++L+ M + G+  +G  
Sbjct: 698 IVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 147/294 (50%), Gaps = 4/294 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T TF  ++ GLC       A      +   GF  + ++Y  LI GLCK G  R A  
Sbjct: 152 VPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALD 211

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ +  +   PN + Y TI+    + +      ++ S M  KG + D   Y  +I+ F 
Sbjct: 212 LLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFC 271

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            +G+L +A D   +M+ + ++ D+ ++N L+N +CK+GK++    + D M KQG + +  
Sbjct: 272 ILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFV 331

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  L+DG C    +  A+     M + G + ++++Y+ +++   K  K D A+N+F+ M
Sbjct: 332 TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM 391

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                + D  TYSS++  L K+ R+  A +L+      GV        +++D L
Sbjct: 392 HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDAL 445



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 4/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TFNI++N  CK+        +F  + K G  P  VTYN L+ G C    
Sbjct: 286 MILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ I   +   G  P+  +Y+ ++    + +K+   + +   M RK    D   Y +
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+  A   ++QM   GV   I +YN++++  CK  +++ A  LL +++ +G
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKG 465

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + + YT++ILI GLC++G ++ AR   E +   G + N++ Y  ++     +G  + A+
Sbjct: 466 IQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEAL 525

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +   ME    + D+ TY  ++ +L K      A KLL   +  GVR
Sbjct: 526 ALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVR 572



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++ +CK +  + A  +F  +   G  P++VTY+ LI G C  G+L  A 
Sbjct: 221 VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAI 280

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+  T+  ++    ++ K K G  +   M ++G   +   Y +++  +
Sbjct: 281 DLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +  + +A      M   GV  DI SY+ +IN +CK  K + A  L  EM ++    D 
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV 400

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LIDGL K+G I  A   ++ M+  G    +  YN I+D L K  ++D AI +   
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTK 460

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++ K    + +TYS ++  LC++ +L  A K+    L  G  +       ++ G    G 
Sbjct: 461 LKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGL 520

Query: 302 RREAKKIQSKIR 313
             EA  + SK+ 
Sbjct: 521 FNEALALLSKME 532



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 144/333 (43%), Gaps = 39/333 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    FN +L  L K+++    L + + ++  G  P LV  NILI   C+ G +  A  
Sbjct: 82  TPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFS 141

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  ++   G+ P+ IT+TT++K      + +        +   G+ FD   Y T+I    
Sbjct: 142 VFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC 201

Query: 127 KIGR-----------------------------------LKEATDYMEQMVTDGVQLDIV 151
           K+G                                    + EA D   +M++ G+  D+V
Sbjct: 202 KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVV 261

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y+ LI+ +C  GKL  A  L ++M  +  + D YT  IL++  CK G +K  +   + M
Sbjct: 262 TYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRL 267
            K G   N   YN ++D      +++ A ++F +M       D  +YS M++  CK K+ 
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKF 381

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             A  L     +  +        +++DGL  SG
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG 414



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 126/277 (45%), Gaps = 4/277 (1%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           N   D+A+ +F  L +    P    +N ++  L K+    T  ++ +++   G  PN + 
Sbjct: 63  NNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVN 122

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
              ++ C  +         + + + + GY  D   + T+I      G++++A  + +++V
Sbjct: 123 CNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVV 182

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
             G   D +SY TLI+  CK G+  AA  LL  ++    + +   +  +ID +CK   + 
Sbjct: 183 ALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVN 242

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMV 258
            A      M   G   ++  Y+ ++      GK++ AI++F  M ++    D +T++ +V
Sbjct: 243 EAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILV 302

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +  CK  ++     +    +K G++       +++DG
Sbjct: 303 NAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDG 339



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 112/243 (46%), Gaps = 4/243 (1%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N I+Y++       N      + + + + R+  T   F +  ++ + VK           
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           ++M   G++ ++V+ N LIN +C+ G +  A+ +  ++ K G+  D  T T LI GLC  
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLK 168

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTY 254
           G I+ A L  + +  +GF  +  +Y  ++  L K G+   A+++ + ++      +   Y
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMY 228

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           ++++ ++CK K +  A  L    +  G+        A++ G    G   +A  + +K+ +
Sbjct: 229 NTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMIL 288

Query: 315 AKI 317
             I
Sbjct: 289 ENI 291



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ IM+ G C     + AL +   ++ +G +P+  TY I+I  L K      A  +L+E+
Sbjct: 507 TYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREM 566

Query: 72  GDSGHAPNAI 81
              G  P  I
Sbjct: 567 IARGVRPRQI 576


>gi|240254074|ref|NP_172820.4| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190928|gb|AEE29049.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 147/279 (52%), Gaps = 10/279 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   + NI++NGLC       AL +   + KHG  P+ VTYNIL KG    G + 
Sbjct: 251 CG-LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMIS 309

Query: 63  TARWILKELGDSGHAPNAITYTTIM--KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            A  +++++ D G +P+ ITYT ++  +C   N    +GL +L  M  +G+  +    C+
Sbjct: 310 GAWEVIRDMLDKGLSPDVITYTILLCGQCQLGN--IDMGLVLLKDMLSRGFELNSIIPCS 367

Query: 121 V-IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           V ++   K GR+ EA     QM  DG+  D+V+Y+ +I+  CK GK + A  L DEM  +
Sbjct: 368 VMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDK 427

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               +  TH  L+ GLC+ G +  AR  L+ +   G   ++  YN ++D   K G I+ A
Sbjct: 428 RILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEA 487

Query: 240 INVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           + +F    E+       T++S+++  CK + +  A K+L
Sbjct: 488 LELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 526



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 5/302 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ +++GLC+ +  ++A+   R  +     P +V++N ++ G CK G +  A+     +
Sbjct: 189 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 248

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  ++  ++            LE+ S M + G   D   Y  +   F  +G +
Sbjct: 249 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 308

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH-TI 190
             A + +  M+  G+  D+++Y  L+   C+ G ++   +LL +M  +GFE +     ++
Sbjct: 309 SGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSV 368

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           ++ GLCK G I  A      M   G   +L AY+ ++  L K GK D A+ +++ M    
Sbjct: 369 MLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKR 428

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            + +S T+ +++  LC+   L  A  LL S + SG  +       V+DG   SGC  EA 
Sbjct: 429 ILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEAL 488

Query: 307 KI 308
           ++
Sbjct: 489 EL 490



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 148/330 (44%), Gaps = 40/330 (12%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+++G  K+   + AL +F+ + + G  P + T+N LI G CK   +  AR IL  + 
Sbjct: 471 YNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 530

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G AP+ ++YTT+M         K   E+   MK +G       Y  +     +  + +
Sbjct: 531 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHE 590

Query: 133 EATDYMEQ------------MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                + +            M ++G+  D ++YNT+I   C+   L  A++ L+ M+ + 
Sbjct: 591 NCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRN 650

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ ILID LC  G I+ A   +  + +     +  AY  ++      G  + A+
Sbjct: 651 LDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAV 710

Query: 241 NVFESM-------EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK---SGVRILKSAQK 290
            +F  +        ++D   YS++++ LC+        + L++C     +GV  L S ++
Sbjct: 711 KLFHQLLHRGFNVSIRD---YSAVINRLCR--------RHLMNCFPGQSNGVCCLISNER 759

Query: 291 AVVD-GLRHSGCRREAKKIQSKIRMAKISH 319
           + V   +  + CRR    ++      K+SH
Sbjct: 760 SFVYCPILSANCRRHTLSVE------KLSH 783



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 128/279 (45%), Gaps = 5/279 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAG 59
           M+   L+P   T+ I+L G C+    D  L + + +   GF +  ++  ++++ GLCK G
Sbjct: 318 MLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTG 377

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+  A  +  ++   G +P+ + Y+ ++    +  K+ + L +   M  K    +   + 
Sbjct: 378 RIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHG 437

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++    + G L EA   ++ +++ G  LDIV YN +I+ Y K G +E A  L   + + 
Sbjct: 438 ALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIET 497

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G      T   LI G CK  NI  AR  L+ +   G   ++ +Y  ++D     G     
Sbjct: 498 GITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSI 557

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
             +   M+ +     + TYS +   LC+  +  + + +L
Sbjct: 558 DELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVL 596



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 16/206 (7%)

Query: 6   LTPCTATFNIMLNGL--CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           L P   ++  +++    C N  + + LR  R ++  G  P  VTY+++ KGLC+  +   
Sbjct: 534 LAPSVVSYTTLMDAYANCGNTKSIDELR--REMKAEGIPPTNVTYSVIFKGLCRGWKHEN 591

Query: 64  ARWILKE------------LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
              +L+E            +   G  P+ ITY TI++   R +        L  MK +  
Sbjct: 592 CNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNL 651

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
                 Y  +I +    G +++A  ++  +    V L   +Y TLI  +C +G  E A  
Sbjct: 652 DASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVK 711

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCK 197
           L  ++  +GF      ++ +I+ LC+
Sbjct: 712 LFHQLLHRGFNVSIRDYSAVINRLCR 737



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 22/259 (8%)

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRT---ARWILKELGDSGHAPNAITYTTIMKC 89
           FR  +  G V +++ +         + RLR    + +ILK++ D     +  +Y +++  
Sbjct: 117 FRKWESTGLVWDMLLF--------LSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVL-- 166

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
            +  R+     ++   +K K    +   Y TV+    +  +L++A  ++       +   
Sbjct: 167 -YHFRETDKMWDVYKEIKDK----NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPS 221

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +VS+N++++ YCK G ++ A      + K G     Y+H ILI+GLC  G+I  A     
Sbjct: 222 VVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELAS 281

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            MNK G + +   YN +       G I  A  V   M  K    D  TY+ ++   C+  
Sbjct: 282 DMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLG 341

Query: 266 RLPSASKLLLSCLKSGVRI 284
            +     LL   L  G  +
Sbjct: 342 NIDMGLVLLKDMLSRGFEL 360


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 140/276 (50%), Gaps = 7/276 (2%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P   T+N ++ GLCK  Y  +A  +   +Q  G  P ++TY ILI   CK GRL 
Sbjct: 403 CG---PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLE 459

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            AR +L E+   G A NA+ Y  ++    ++ K +  L +   M  KG   D F + ++I
Sbjct: 460 EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI 519

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K+ + +EA    + M+ +GV  + ++YNTLI+ + + G ++ A  L+++M  +G  
Sbjct: 520 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCP 579

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+  LI  LC+AGNI+      E M   G + N  + N +++ L + G I HA+  
Sbjct: 580 LDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEF 639

Query: 243 FESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
              M       D  TY+S+++ LCK  R   A  L 
Sbjct: 640 LRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 675



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 160/344 (46%), Gaps = 36/344 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF +++  LC     D+A  + + + +HG VP  + Y  LI  L K GR
Sbjct: 226 MLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGR 285

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-- 118
           +     +L+E+   G  P+  T+   +    +  +     +++  M  +G+T + F Y  
Sbjct: 286 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 345

Query: 119 -----C------------------------TVIAAFVKIGRLKEATDYM-EQMVTDGVQL 148
                C                        T+I  +V  GRL EA   M E M++ G   
Sbjct: 346 LMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 405

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DI +YNTLI   CK+G L +A  L++EM+ +G E +  T+TILID  CK G ++ AR  L
Sbjct: 406 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 465

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           + M+  G   N   YNC++  L KD K+  A+N+F  M  K    D FT++S++  LCK 
Sbjct: 466 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKV 525

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +   A  L    L  GV         ++      G  +EA K+
Sbjct: 526 NKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 569



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 108/227 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLCK    + AL +++ +   G +   +TYN LI    + G ++ A  +
Sbjct: 510 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 569

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G   + ITY  ++K   R    + GL +   M  KG   +      +I    +
Sbjct: 570 VNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 629

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A +++  M+  G+  DIV+YN+LIN  CK G+ + A  L D+++ +G   D  T
Sbjct: 630 TGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAIT 689

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +  LI   CK G    A L L      GF  N   +  +V    K+G
Sbjct: 690 YNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 736



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 97/191 (50%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N +++   +      AL++   +   G   + +TYN LIK LC+AG +     + +
Sbjct: 547 TITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFE 606

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G  PN I+   ++    R    +  LE L  M  +G T D   Y ++I    K G
Sbjct: 607 DMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTG 666

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R +EA +  +++  +G+  D ++YNTLI+ +CKEG  + A+LLL      GF  ++ T  
Sbjct: 667 RAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWY 726

Query: 190 ILIDGLCKAGN 200
           IL+    K G+
Sbjct: 727 ILVSNFIKEGD 737



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 9/237 (3%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P   +YN+++  L      +    +  E+   G +P   T+  +MK      +      +
Sbjct: 198 PTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACAL 257

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  M R G   +   Y T+I A  K+GR+ E    +E+M+  G   D+ ++N  I+  CK
Sbjct: 258 LKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK 317

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
             ++  A  L+D M  +GF  + +T+ +L+ GLC+ G +  AR+ L   NK+  + N+  
Sbjct: 318 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLL---NKVP-NPNVVL 373

Query: 223 YNCIVDRLGKDGKIDHAINVF-ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           +N +++     G++D A  V  ESM       D FTY++++  LCK   L SA +L+
Sbjct: 374 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELM 430



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   + NI++NGLC+     +AL   R +   G  P++VTYN LI GLCK GR
Sbjct: 608 MMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGR 667

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +  +L   G  P+AITY T++    +   +     +LS     G+  +   +  
Sbjct: 668 AQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYI 727

Query: 121 VIAAFVKIG 129
           +++ F+K G
Sbjct: 728 LVSNFIKEG 736



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 3/250 (1%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA-RWILKELGDSGHAPNAITYT 84
           T +AL M   +++ G V     + +++K   +AG    A R +L   G     P   +Y 
Sbjct: 147 TTDALLM--QMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYN 204

Query: 85  TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
            ++         K+   +   M  KG +   + +  V+ A   +  +  A   ++ M   
Sbjct: 205 VVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRH 264

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G   + + Y TLI+   K G++     LL+EM   G   D  T    I GLCK   I  A
Sbjct: 265 GCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEA 324

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA 264
              ++ M   GF  N   Y  ++  L + GK+D A  +   +   +   ++++++     
Sbjct: 325 AKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSR 384

Query: 265 KRLPSASKLL 274
            RL  A  ++
Sbjct: 385 GRLDEAKAVM 394


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++G CK    D+A+ +   + + G    +VTY +L+ GLCK  ++  A  +L+ +
Sbjct: 330 TYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G   N + YTT++   F N+  +  L +LS MK KG   D   Y  +I     + +L
Sbjct: 390 EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKL 449

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA   + +M   G++ + + Y T+++   K GK+  A  +L ++   GF+ +  T+  L
Sbjct: 450 DEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCAL 509

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           IDGLCKAG+I  A  H   M  +G D N++AY  +VD L K+G ++ A+ +F  M  K  
Sbjct: 510 IDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGM 569

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D   Y++++    K   L  A  L    + SG+++        + G  +     EA++
Sbjct: 570 SLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEARE 629

Query: 308 IQSKI 312
           + S++
Sbjct: 630 VFSEM 634



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 4/310 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFNI+++ LCK      A  +F  +++ G +P++VT+N LI G  K G L     
Sbjct: 185 APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQ 244

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++E+  SG   + +TY  ++ C  +  + +      +AMKR+G   +   + T + AF 
Sbjct: 245 LVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G ++EA     QM   G+ L+  +Y  LI+  CK G+L+ A +LLDEM +QG   +  
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T+L+DGLCK   +  A   L  M K G  +N   Y  ++     +   + A+ +   M
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEM 424

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + K    D   Y +++  LC   +L  A  LL    +SG+         ++D    SG  
Sbjct: 425 KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKV 484

Query: 303 REAKKIQSKI 312
            EA  +  KI
Sbjct: 485 PEAIAMLQKI 494



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 129/282 (45%), Gaps = 43/282 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T N +L  L ++R      R+F  L      P + T+NI+I  LCK G L  AR
Sbjct: 153 VPPNTRTCNHILLRLARDRSGRLVRRLFEQLP----APNVFTFNIVIDFLCKEGELAEAR 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + + G  P+ +T+ +++                          DG+G C      
Sbjct: 209 SLFSRMKEMGCLPDVVTFNSLI--------------------------DGYGKC------ 236

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    +E+M   G + D+V+YN LIN +CK G++E AY     M+++G   + 
Sbjct: 237 ---GELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANV 293

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T +  +D  CK G ++ A      M   G   N   Y C++D   K G++D AI + + 
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDE 353

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M  +    +  TY+ +V  LCK +++  A  +L    K+GVR
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR 395



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 35/270 (12%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G   N+ ++ AL +   ++  G   ++  Y  LI+GLC   +L  A+ +L ++ 
Sbjct: 401 YTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMD 460

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +SG  PN I YTT+M  CF++ K    + +L  +   G+  +   YC +I    K G + 
Sbjct: 461 ESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSID 520

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA  +  +M   G+  ++ +Y  L++  CK G L  A  L +EM  +G   DK  +T L+
Sbjct: 521 EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580

Query: 193 DGLCKAGNI------------KGARLHL--------------------EYMNKI---GFD 217
           DG  K GN+             G +L L                    E  +++   G  
Sbjct: 581 DGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIA 640

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +   YNC++ +  K G ++ AI++ + ME
Sbjct: 641 PDRAVYNCLISKYQKLGNLEEAISLQDEME 670



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 92/199 (46%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  M++   K+     A+ M + +   GF P ++TY  LI GLCKAG +  A 
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++ D G  PN   YT ++    +N      +++ + M  KG + D   Y  ++  +
Sbjct: 524 SHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGY 583

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K G L +A     +M+  G+QLD+  Y   I+ +C    +  A  +  EM   G   D+
Sbjct: 584 LKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDR 643

Query: 186 YTHTILIDGLCKAGNIKGA 204
             +  LI    K GN++ A
Sbjct: 644 AVYNCLISKYQKLGNLEEA 662



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 80/176 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK    D A+  F  ++  G  P +  Y  L+ GLCK G L  A  +
Sbjct: 501 PNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQL 560

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+   G + + + YT ++    +         + + M   G   D F Y   I+ F  
Sbjct: 561 FNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCN 620

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +  + EA +   +M+  G+  D   YN LI+ Y K G LE A  L DEME+    C
Sbjct: 621 LNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSC 676



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T  I+ID LCK G +  AR     M ++G   ++  +N ++D  GK G++D    + E 
Sbjct: 189 FTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEE 248

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D  TY+++++  CK  R+ +A     +  + GV          VD     G 
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308

Query: 302 RREAKKIQSKIRM 314
            REA K+ +++R+
Sbjct: 309 VREAMKLFAQMRV 321


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 147/281 (52%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   +++ +++G C       AL++   +Q  G  P   TYN +I  LCK G+   A  
Sbjct: 290 TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEK 349

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+      P+ + YTT++   F+    +   +    M  K  + D   Y T+I  F 
Sbjct: 350 VLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFG 409

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G++ E  +   +M++ G++ D V+Y TLI++YCK G++  A+ L +EM + G   +  
Sbjct: 410 QGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIV 469

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LIDGLCK G +  A   L+ M K G   N+  YN +V+ + K G I+ AI + + M
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           EV     D+ TY++++   C+   +  A KLL   L  G++
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ 570



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 122/246 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+  +++GLCK+   D A  +   ++K G    +  YN ++ G+CKAG 
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++KE+  +G  P+AITYTT++    R        ++L  M  +G       +  
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNV 578

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F  +G L++    +  M+  G+  D ++YNTL+  +C    +     +   M  QG
Sbjct: 579 LMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG 638

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+ ILI G CKA N+K A    + M + G+   + +YN ++ R  K  KI  A 
Sbjct: 639 VAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEAR 698

Query: 241 NVFESM 246
            +FE M
Sbjct: 699 ELFEEM 704



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 147/317 (46%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+  ++ G  +         +F  +   G  P+ VTY  LI   CKAG 
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE 448

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+   G  PN +TY  ++    ++ +     E+L  M++KG   +   Y +
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNS 508

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G +++A   M++M   G+  D ++Y T+I+ YC+ G ++ A+ LL EM  +G
Sbjct: 509 MVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRG 568

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T  +L++G C  G ++     L +M + G   +   YN ++ +      ++   
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTT 628

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +++ M       DS TY+ ++   CKA+ L  A  L    ++ G     ++  A++   
Sbjct: 629 KIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRF 688

Query: 297 RHSGCRREAKKIQSKIR 313
                  EA+++  ++R
Sbjct: 689 YKKKKILEARELFEEMR 705



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 140/298 (46%), Gaps = 41/298 (13%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           ++G      +YNI+I  LC+ G+++ A  +L ++      P+ ++Y+T++       + K
Sbjct: 251 EYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELK 310

Query: 98  LGLEILSAMKRKG-----YTF------------------------------DGFGYCTVI 122
             L+++  M+ KG     YT+                              D   Y T+I
Sbjct: 311 KALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K+G ++ A  + ++M++  +  D ++Y TLI  + + GK+     L  EM  +G +
Sbjct: 371 HGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLK 430

Query: 183 CDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            D+ T+T LID  CKAG +  A  LH E M ++G   N+  Y  ++D L K G++D A  
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNE-MVQMGMTPNIVTYGALIDGLCKHGELDTANE 489

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + + M  K    +   Y+SMV+ +CKA  +  A KL+     +G+         V+D 
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA 547



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +  +++G  K  +   A + F  +      P+ +TY  LI+G  + G+
Sbjct: 354 MMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGK 413

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   + +  E+   G  P+ +TYTT++    +  +      + + M + G T +   Y  
Sbjct: 414 VIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGA 473

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A + +++M   G+QL++  YN+++N  CK G +E A  L+ EME  G
Sbjct: 474 LIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+T +ID  C+ G+I  A   L+ M   G    +  +N +++     G ++   
Sbjct: 534 IDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   M     V D+ TY++++   C    + + +K+       GV
Sbjct: 594 RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGV 639



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 108/230 (46%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N M+NG+CK    + A+++ + ++  G  P+ +TY  +I   C+ G +  A  +L+E+ 
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G  P  +T+  +M         + G  +L  M  KG   D   Y T++        + 
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
             T   ++M   GV  D  +YN LI  +CK   L+ A+ L  EM ++G+     ++  LI
Sbjct: 626 TTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
               K   I  AR   E M   G  ++ E YN  VD   ++G ++  +N+
Sbjct: 686 KRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNL 735



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 133/310 (42%), Gaps = 6/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+I    L +  +   A ++   L  +G V  + + N  +  +  A         
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRI--ANNSEGIEMA 245

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +K   + G + N  +Y  I+    R  K K    +L  M  +  T D   Y TVI  +  
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G LK+A   M+ M   G++ +  +YN++I L CK GK   A  +L EM  Q    D   
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LI G  K G+++ A    + M       +   Y  ++   G+ GK+    N+F  M 
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++   CKA  + +A  L    ++ G+        A++DGL   G   
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 304 EAKKIQSKIR 313
            A ++  ++R
Sbjct: 486 TANELLDEMR 495



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 82/170 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN+++NG C     ++  R+   + + G VP+ +TYN L+K  C    + T  
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTT 628

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I K + + G AP++ TY  ++K   + R  K    +   M  KGY      Y  +I  F
Sbjct: 629 KIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRF 688

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            K  ++ EA +  E+M   G+  D   YN  +++  +EG +E    L DE
Sbjct: 689 YKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDE 738



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 107/237 (45%), Gaps = 11/237 (4%)

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFG-----YCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           F N K ++G+++     R  YT+  +G     +       V+IG L EA   ++++++ G
Sbjct: 161 FLNSKLEIGVKMTQFTHRLIYTYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYG 220

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           + + + S N  ++        E   + +    + G   +  ++ I+I  LC+ G +K A 
Sbjct: 221 LVVTVDSCNAFLSRIANNS--EGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAH 278

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
             L  M+      ++ +Y+ ++D     G++  A+ + + M++K    + +TY+S++  L
Sbjct: 279 RLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLL 338

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           CK  +   A K+L   +   +         ++ G    G  R A K   ++   KIS
Sbjct: 339 CKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKIS 395


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 158/341 (46%), Gaps = 44/341 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+ ++GLCK    D+A ++ + + +   +P  VTY  L+ GL KAGRL  A  I
Sbjct: 74  PDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAI 133

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ + G++P   TYT ++    +  + +    I   M   G   D F Y  +I+   K
Sbjct: 134 LEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAK 193

Query: 128 IGRLKEATDYMEQMVTD----GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM------- 176
           IG+L EA  Y+ QMV +    GV+ D+V +N +I   C  G LE A    DE+       
Sbjct: 194 IGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLT 253

Query: 177 ----------------------------EKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
                                       E++ F    +T+T L+DG  K G +  A L L
Sbjct: 254 HFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPT-LFTYTSLVDGFLKLGRLDEALLQL 312

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           +   + GF  +   Y  I+D L K G+++     F  M  +    D+ TY++++    KA
Sbjct: 313 KEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKA 372

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           K +P A ++    L+SG  +       ++DGL  +G   EA
Sbjct: 373 KMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEA 413



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 129/256 (50%), Gaps = 4/256 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN ++  LCK   T+ A+   + + +    P L TY  L+ G  K GRL  A   LKE 
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+A+TYT+I+    +  + + G E    M+ +GY  D   Y  +I  F+K   +
Sbjct: 316 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 375

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A     QM+  G  +  V+YN +++  CK G++  AY     ME++G      T++ L
Sbjct: 376 PKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSAL 435

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +DG C  GN+  A      M   G + NL +YN I+  L + GK+  A   FE +  +  
Sbjct: 436 MDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 495

Query: 250 --DSFTYSSMVHNLCK 263
             D +T++S +H LC+
Sbjct: 496 CPDVYTFNSFLHGLCQ 511



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 132/270 (48%), Gaps = 4/270 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++G  K +    A R++R + + G V   VTYNI++ GLCKAGR+  A   
Sbjct: 357 PDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYAT 416

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + + G     +TY+ +M            +E+   M  +G   +   Y  +I    +
Sbjct: 417 FLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 476

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE-GKLEAAYLLLDEMEKQGFECDKY 186
            G+L +A  Y E+++   +  D+ ++N+ ++  C+    +     L + M  QG   + +
Sbjct: 477 AGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLH 536

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +++IL+DG+C+AG ++        M   G   ++  +N ++  L   G++D A+ VF  +
Sbjct: 537 SYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL 596

Query: 247 E---VKDSFTYSSMVHNLCKAKRLPSASKL 273
           E     D+++Y S++  L + +R+  A  L
Sbjct: 597 ERRSAPDAWSYWSLLDALSRCERMEEARLL 626



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 42/235 (17%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           L+ GLCK G+L  A  +L E+  S   P+ + +T ++                       
Sbjct: 15  LLNGLCKTGQLDRAMLLLDEMPCS---PDMVAFTVVIN---------------------- 49

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
                 G C       +  RL EA   +E+ V  G + D V+YN  I+  CK  +++ A+
Sbjct: 50  ------GLC-------REKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 96

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            LL +M+++       T+T L+DGL KAG +  A   LE M + G    L+ Y  ++D L
Sbjct: 97  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGL 156

Query: 231 GKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            K G+++ A  +F  M       D+F Y++++  L K  +L  A   L   +++G
Sbjct: 157 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENG 211



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
             L+N  CK G+L+ A LLLDEM       D    T++I+GLC+   +  A   LE   +
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEMPCSP---DMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G + +   YN  +D L K  ++D A  + + M+ K     + TY+++V  L KA RL  
Sbjct: 70  AGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDE 129

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           A  +L   ++ G          V+DGL  +G   EA++I
Sbjct: 130 AMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRI 168



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 2/130 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           L P   TFN  L+GLC+   T  + + +F  +   G  P L +Y+IL+ G+C+AG L   
Sbjct: 495 LCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVT 554

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             I  E+   G AP+ + + T+++      +    LE+   ++R+    D + Y +++ A
Sbjct: 555 LEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAP-DAWSYWSLLDA 613

Query: 125 FVKIGRLKEA 134
             +  R++EA
Sbjct: 614 LSRCERMEEA 623



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 1/110 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   +++I+++G+C+    +  L +F  +   G  P++V +N LI+ LC AGR
Sbjct: 526 MVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGR 585

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           +  A  + +EL +   AP+A +Y +++    R  + +    +   MK +G
Sbjct: 586 VDEALEVFREL-ERRSAPDAWSYWSLLDALSRCERMEEARLLSFHMKLQG 634


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 141/273 (51%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  ++N LCK      A+ +F  +   G  P++ TY  +I GLCK G    A 
Sbjct: 164 LQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAA 223

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK++ ++G  PN +TY+TI+    ++R+    L+I S MK KG + D F Y ++I   
Sbjct: 224 GLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGL 283

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               + KEA+  + +M +  +  DIV++N L++  CKEGK+  A  +L  M + G E D 
Sbjct: 284 CNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDV 343

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ L+ G      +  AR   + M   G   ++ +YN +++   K  +ID A  +F  
Sbjct: 344 VTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNE 403

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M       ++ +Y++++H LC+   L  A  L 
Sbjct: 404 MIHQGLTPNNVSYNTLIHGLCQLGSLREARNLF 436



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 144/302 (47%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++   K+R  + AL +F  ++  G  P++ TYN LI+GLC   + + A  +
Sbjct: 236 PNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL 295

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+ +T+  ++    +  K      +L  M   G   D   Y +++  +  
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSL 355

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + EA    + M+T G + D+ SYN LIN YCK  +++ A  L +EM  QG   +  +
Sbjct: 356 RSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVS 415

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI GLC+ G+++ AR   + M+  G   NL  Y+ ++D   K G    A  +F +M+
Sbjct: 416 YNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQ 475

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
              S      Y+ ++  +CK+  L  A KL       G++        +++GL   G   
Sbjct: 476 STYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLD 535

Query: 304 EA 305
           EA
Sbjct: 536 EA 537



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T +I++N     +  D A  +   + K G  P +VT+  LI  LCK G+   A 
Sbjct: 129 LSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAM 188

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  P+  TYTTI+    +  +      +L  M+  G   +   Y T+I + 
Sbjct: 189 ELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSH 248

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ EA D    M   G+  DI +YN+LI   C   + + A  LL+EM       D 
Sbjct: 249 RKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDI 308

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  +L+D +CK G +  A+  L+ M ++G + ++  Y+ ++       ++  A  +F++
Sbjct: 309 VTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDA 368

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D F+Y+ +++  CK KR+  A +L    +  G+     +   ++ GL   G 
Sbjct: 369 MITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGS 428

Query: 302 RREAKKI 308
            REA+ +
Sbjct: 429 LREARNL 435



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 141/308 (45%), Gaps = 39/308 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++ GLC       A  +   ++    +P++VT+N+L+  +CK G++  A+
Sbjct: 269 ISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQ 328

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK + + G  P+ +TY+++M       +     ++  AM  KG   D F Y  +I  +
Sbjct: 329 GVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGY 388

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+ R+ EA     +M+  G+  + VSYNTLI+  C+ G L  A  L   M   G   + 
Sbjct: 389 CKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNL 448

Query: 186 YTHTILIDG-----------------------------------LCKAGNIKGARLHLEY 210
           +T++IL+DG                                   +CK+GN++ AR     
Sbjct: 449 FTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSE 508

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           +   G   N + Y  I++ L K+G +D A+  F +ME      D  +Y+ ++      K 
Sbjct: 509 LFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKD 568

Query: 267 LPSASKLL 274
              A +L+
Sbjct: 569 ESRAVQLI 576



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 76/177 (42%), Gaps = 35/177 (19%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I+L+G CK  Y   A R+FR +Q     P LV YNILI  +CK+G LR AR +
Sbjct: 446 PNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKL 505

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             EL   G  PNA  YTTI+                             G C       K
Sbjct: 506 FSELFVKGLQPNAQIYTTIIN----------------------------GLC-------K 530

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            G L EA +    M  DG   D +SYN +I  +        A  L+ EM  +GF  D
Sbjct: 531 EGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 5/174 (2%)

Query: 150 IVSYNTLINLYCKEGKL-EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           I+ +  L++   K G+  +    L  +ME  G   + YT +ILI+       +  A   L
Sbjct: 97  IIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVL 156

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             + K+G    +  +  +++ L K GK   A+ +F+ M  +    D +TY+++++ LCK 
Sbjct: 157 AKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKI 216

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
               +A+ LL    ++G +        ++D  R      EA  I S +++  IS
Sbjct: 217 GETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGIS 270


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 171/351 (48%), Gaps = 42/351 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF +++  LC     DNA  + R + KHG VP  + Y  LI  L K  R
Sbjct: 201 MLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDR 260

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG--FGY 118
           +  A  +L+E+   G  P+  T+ T++    R  +   G +++  M  KG+T +   +GY
Sbjct: 261 VDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGY 320

Query: 119 C-----------------------------TVIAAFVKIGRLKEATDYM-EQMVTDGVQL 148
                                         T++  FV+ GRL EAT ++ ++M+ +G   
Sbjct: 321 LMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVP 380

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+ +++TL+N  CK+G   +A  L+++M+ +G + +  T+TILIDG CK G ++ A L L
Sbjct: 381 DVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLIL 440

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M   GF  N   YN ++  L K GKI  A+++F  M  K    D FT++S++  LC+ 
Sbjct: 441 REMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRV 500

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
             +  A  L    +  GV     A     + L H+  RR   +IQ  +++ 
Sbjct: 501 DEMEDALALYRDMVLEGV----IANSVTFNTLIHAFLRR--GEIQEALKLV 545



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 151/320 (47%), Gaps = 39/320 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TF+ ++NGLCK     +AL +   +   G  P L TY ILI G CK G+
Sbjct: 373 MINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQ 432

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDG 115
           L  A  IL+E+   G + N + Y  ++    ++ K    L++   M  KG     +TF+ 
Sbjct: 433 LEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNS 492

Query: 116 --FGYC----------------------------TVIAAFVKIGRLKEATDYMEQMVTDG 145
             FG C                            T+I AF++ G ++EA   +  M+  G
Sbjct: 493 LIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRG 552

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
             LD ++YN LI   CK G +E    L +EM ++G      T  ILI+G C AG +  A 
Sbjct: 553 CPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNAL 612

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
             +  M   GF  ++  YN +++ L K G+I  A+N+FE ++ +    DS TY++++  L
Sbjct: 613 EFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWL 672

Query: 262 CKAKRLPSASKLLLSCLKSG 281
           C+      A  LL   +++G
Sbjct: 673 CREGAFDDACFLLYRGVENG 692



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 112/225 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLC+    ++AL ++R +   G +   VT+N LI    + G ++ A  +
Sbjct: 485 PDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKL 544

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G   + ITY  ++K   +    + GL +   M RKG T        +I  F  
Sbjct: 545 VNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCT 604

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A ++M  M+  G   DIV+YN+LIN  CK G+++ A  L ++++ +G + D  T
Sbjct: 605 AGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSIT 664

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           +  LI  LC+ G    A   L    + GF  N   +N +V   GK
Sbjct: 665 YNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGK 709



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           + TFN +++   +      AL++   +   G   + +TYN LIK LCK G +     + +
Sbjct: 522 SVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFE 581

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G  P+ IT   ++       K    LE +  M  +G++ D   Y ++I    K G
Sbjct: 582 EMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRG 641

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R++EA +  E++  +G+Q D ++YNTLI   C+EG  + A  LL    + GF  +  T  
Sbjct: 642 RIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWN 701

Query: 190 ILIDGLCKAGNIKG 203
           IL+    K  N +G
Sbjct: 702 ILVYNFGKQSNSEG 715



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   T+N ++NGLCK      AL +F  LQ  G  P+ +TYN LI  LC+ G 
Sbjct: 618 MIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGA 677

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM 87
              A ++L    ++G  PN +T+  ++
Sbjct: 678 FDDACFLLYRGVENGFVPNDVTWNILV 704


>gi|8920567|gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
           from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
           contains a PPR repeat domain PF|01535 [Arabidopsis
           thaliana]
          Length = 797

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 147/279 (52%), Gaps = 10/279 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   + NI++NGLC       AL +   + KHG  P+ VTYNIL KG    G + 
Sbjct: 264 CG-LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMIS 322

Query: 63  TARWILKELGDSGHAPNAITYTTIM--KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            A  +++++ D G +P+ ITYT ++  +C   N    +GL +L  M  +G+  +    C+
Sbjct: 323 GAWEVIRDMLDKGLSPDVITYTILLCGQCQLGN--IDMGLVLLKDMLSRGFELNSIIPCS 380

Query: 121 V-IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           V ++   K GR+ EA     QM  DG+  D+V+Y+ +I+  CK GK + A  L DEM  +
Sbjct: 381 VMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDK 440

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               +  TH  L+ GLC+ G +  AR  L+ +   G   ++  YN ++D   K G I+ A
Sbjct: 441 RILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEA 500

Query: 240 INVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           + +F    E+       T++S+++  CK + +  A K+L
Sbjct: 501 LELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 539



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 5/302 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ +++GLC+ +  ++A+   R  +     P +V++N ++ G CK G +  A+     +
Sbjct: 202 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 261

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  ++  ++            LE+ S M + G   D   Y  +   F  +G +
Sbjct: 262 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 321

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH-TI 190
             A + +  M+  G+  D+++Y  L+   C+ G ++   +LL +M  +GFE +     ++
Sbjct: 322 SGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSV 381

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           ++ GLCK G I  A      M   G   +L AY+ ++  L K GK D A+ +++ M    
Sbjct: 382 MLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKR 441

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            + +S T+ +++  LC+   L  A  LL S + SG  +       V+DG   SGC  EA 
Sbjct: 442 ILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEAL 501

Query: 307 KI 308
           ++
Sbjct: 502 EL 503



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 21/291 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + PC+    +ML+GLCK    D AL +F  ++  G  P+LV Y+I+I GLCK G+   A 
Sbjct: 376 IIPCS----VMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMAL 431

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+  E+ D    PN+ T+  ++    +         +L ++   G T D   Y  VI  +
Sbjct: 432 WLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGY 491

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G ++EA +  + ++  G+   + ++N+LI  YCK   +  A  +LD ++  G     
Sbjct: 492 AKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSV 551

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAIN- 241
            ++T L+D     GN K        M   G       Y+ I   L +  K    +H +  
Sbjct: 552 VSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRE 611

Query: 242 -VFE-------SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +FE        ME +    D  TY++++  LC+ K L S + + L  +KS
Sbjct: 612 RIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHL-SGAFVFLEIMKS 661



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 131/286 (45%), Gaps = 26/286 (9%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+++G  K+   + AL +F+ + + G  P + T+N LI G CK   +  AR IL  + 
Sbjct: 484 YNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 543

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G AP+ ++YTT+M         K   E+   MK +G       Y  +     + G   
Sbjct: 544 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCR-GWKH 602

Query: 133 EATDY-------------MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           E  ++             +  M ++G+  D ++YNT+I   C+   L  A++ L+ M+ +
Sbjct: 603 ENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSR 662

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             +    T+ ILID LC  G I+ A   +  + +     +  AY  ++      G  + A
Sbjct: 663 NLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMA 722

Query: 240 INVFESM-------EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           + +F  +        ++D   YS++++ LC+ + L + SK    CL
Sbjct: 723 VKLFHQLLHRGFNVSIRD---YSAVINRLCR-RHLVNESKFFF-CL 763



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 5/266 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTA 64
           L+P   T+ I+L G C+    D  L + + +   GF +  ++  ++++ GLCK GR+  A
Sbjct: 336 LSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEA 395

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  ++   G +P+ + Y+ ++    +  K+ + L +   M  K    +   +  ++  
Sbjct: 396 LSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLG 455

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + G L EA   ++ +++ G  LDIV YN +I+ Y K G +E A  L   + + G    
Sbjct: 456 LCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPS 515

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T   LI G CK  NI  AR  L+ +   G   ++ +Y  ++D     G       +  
Sbjct: 516 VATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRR 575

Query: 245 SMEVK----DSFTYSSMVHNLCKAKR 266
            M+ +     + TYS +   LC+  +
Sbjct: 576 EMKAEGIPPTNVTYSVIFKGLCRGWK 601



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 16/230 (6%)

Query: 6   LTPCTATFNIMLNGL--CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           L P   ++  +++    C N  + + LR  R ++  G  P  VTY+++ KGLC+  +   
Sbjct: 547 LAPSVVSYTTLMDAYANCGNTKSIDELR--REMKAEGIPPTNVTYSVIFKGLCRGWKHEN 604

Query: 64  ARWILKE------------LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
              +L+E            +   G  P+ ITY TI++   R +        L  MK +  
Sbjct: 605 CNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNL 664

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
                 Y  +I +    G +++A  ++  +    V L   +Y TLI  +C +G  E A  
Sbjct: 665 DASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVK 724

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           L  ++  +GF      ++ +I+ LC+   +  ++     M   G   +L+
Sbjct: 725 LFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLD 774



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 22/259 (8%)

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRT---ARWILKELGDSGHAPNAITYTTIMKC 89
           FR  +  G V +++ +         + RLR    + +ILK++ D     +  +Y +++  
Sbjct: 130 FRKWESTGLVWDMLLF--------LSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVL-- 179

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
            +  R+     ++   +K K    +   Y TV+    +  +L++A  ++       +   
Sbjct: 180 -YHFRETDKMWDVYKEIKDK----NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPS 234

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +VS+N++++ YCK G ++ A      + K G     Y+H ILI+GLC  G+I  A     
Sbjct: 235 VVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELAS 294

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            MNK G + +   YN +       G I  A  V   M  K    D  TY+ ++   C+  
Sbjct: 295 DMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLG 354

Query: 266 RLPSASKLLLSCLKSGVRI 284
            +     LL   L  G  +
Sbjct: 355 NIDMGLVLLKDMLSRGFEL 373


>gi|357529169|sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g13630
          Length = 826

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 147/279 (52%), Gaps = 10/279 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   + NI++NGLC       AL +   + KHG  P+ VTYNIL KG    G + 
Sbjct: 293 CG-LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMIS 351

Query: 63  TARWILKELGDSGHAPNAITYTTIM--KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            A  +++++ D G +P+ ITYT ++  +C   N    +GL +L  M  +G+  +    C+
Sbjct: 352 GAWEVIRDMLDKGLSPDVITYTILLCGQCQLGN--IDMGLVLLKDMLSRGFELNSIIPCS 409

Query: 121 V-IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           V ++   K GR+ EA     QM  DG+  D+V+Y+ +I+  CK GK + A  L DEM  +
Sbjct: 410 VMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDK 469

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               +  TH  L+ GLC+ G +  AR  L+ +   G   ++  YN ++D   K G I+ A
Sbjct: 470 RILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEA 529

Query: 240 INVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           + +F    E+       T++S+++  CK + +  A K+L
Sbjct: 530 LELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 568



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 5/302 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ +++GLC+ +  ++A+   R  +     P +V++N ++ G CK G +  A+     +
Sbjct: 231 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 290

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  ++  ++            LE+ S M + G   D   Y  +   F  +G +
Sbjct: 291 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 350

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH-TI 190
             A + +  M+  G+  D+++Y  L+   C+ G ++   +LL +M  +GFE +     ++
Sbjct: 351 SGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSV 410

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           ++ GLCK G I  A      M   G   +L AY+ ++  L K GK D A+ +++ M    
Sbjct: 411 MLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKR 470

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            + +S T+ +++  LC+   L  A  LL S + SG  +       V+DG   SGC  EA 
Sbjct: 471 ILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEAL 530

Query: 307 KI 308
           ++
Sbjct: 531 EL 532



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 21/291 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + PC+    +ML+GLCK    D AL +F  ++  G  P+LV Y+I+I GLCK G+   A 
Sbjct: 405 IIPCS----VMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMAL 460

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+  E+ D    PN+ T+  ++    +         +L ++   G T D   Y  VI  +
Sbjct: 461 WLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGY 520

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G ++EA +  + ++  G+   + ++N+LI  YCK   +  A  +LD ++  G     
Sbjct: 521 AKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSV 580

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAIN- 241
            ++T L+D     GN K        M   G       Y+ I   L +  K    +H +  
Sbjct: 581 VSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRE 640

Query: 242 -VFE-------SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +FE        ME +    D  TY++++  LC+ K L S + + L  +KS
Sbjct: 641 RIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHL-SGAFVFLEIMKS 690



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 130/285 (45%), Gaps = 24/285 (8%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+++G  K+   + AL +F+ + + G  P + T+N LI G CK   +  AR IL  + 
Sbjct: 513 YNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 572

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G AP+ ++YTT+M         K   E+   MK +G       Y  +     +  + +
Sbjct: 573 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHE 632

Query: 133 EATDYMEQ------------MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                + +            M ++G+  D ++YNT+I   C+   L  A++ L+ M+ + 
Sbjct: 633 NCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRN 692

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ ILID LC  G I+ A   +  + +     +  AY  ++      G  + A+
Sbjct: 693 LDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAV 752

Query: 241 NVFESM-------EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
            +F  +        ++D   YS++++ LC+ + L + SK    CL
Sbjct: 753 KLFHQLLHRGFNVSIRD---YSAVINRLCR-RHLVNESKFFF-CL 792



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 5/266 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTA 64
           L+P   T+ I+L G C+    D  L + + +   GF +  ++  ++++ GLCK GR+  A
Sbjct: 365 LSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEA 424

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  ++   G +P+ + Y+ ++    +  K+ + L +   M  K    +   +  ++  
Sbjct: 425 LSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLG 484

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + G L EA   ++ +++ G  LDIV YN +I+ Y K G +E A  L   + + G    
Sbjct: 485 LCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPS 544

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T   LI G CK  NI  AR  L+ +   G   ++ +Y  ++D     G       +  
Sbjct: 545 VATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRR 604

Query: 245 SMEVK----DSFTYSSMVHNLCKAKR 266
            M+ +     + TYS +   LC+  +
Sbjct: 605 EMKAEGIPPTNVTYSVIFKGLCRGWK 630



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 16/230 (6%)

Query: 6   LTPCTATFNIMLNGL--CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           L P   ++  +++    C N  + + LR  R ++  G  P  VTY+++ KGLC+  +   
Sbjct: 576 LAPSVVSYTTLMDAYANCGNTKSIDELR--REMKAEGIPPTNVTYSVIFKGLCRGWKHEN 633

Query: 64  ARWILKE------------LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
              +L+E            +   G  P+ ITY TI++   R +        L  MK +  
Sbjct: 634 CNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNL 693

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
                 Y  +I +    G +++A  ++  +    V L   +Y TLI  +C +G  E A  
Sbjct: 694 DASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVK 753

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           L  ++  +GF      ++ +I+ LC+   +  ++     M   G   +L+
Sbjct: 754 LFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLD 803



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 22/259 (8%)

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRT---ARWILKELGDSGHAPNAITYTTIMKC 89
           FR  +  G V +++ +         + RLR    + +ILK++ D     +  +Y +++  
Sbjct: 159 FRKWESTGLVWDMLLF--------LSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVL-- 208

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
            +  R+     ++   +K K    +   Y TV+    +  +L++A  ++       +   
Sbjct: 209 -YHFRETDKMWDVYKEIKDK----NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPS 263

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +VS+N++++ YCK G ++ A      + K G     Y+H ILI+GLC  G+I  A     
Sbjct: 264 VVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELAS 323

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            MNK G + +   YN +       G I  A  V   M  K    D  TY+ ++   C+  
Sbjct: 324 DMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLG 383

Query: 266 RLPSASKLLLSCLKSGVRI 284
            +     LL   L  G  +
Sbjct: 384 NIDMGLVLLKDMLSRGFEL 402


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 147/281 (52%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   +++ +++G C       AL++   +Q  G  P   TYN +I  LCK G+   A  
Sbjct: 290 TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEK 349

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+      P+ + YTT++   F+    +   +    M  K  + D   Y T+I  F 
Sbjct: 350 VLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFG 409

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G++ E  +   +M++ G++ D V+Y TLI++YCK G++  A+ L +EM + G   +  
Sbjct: 410 QGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIV 469

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LIDGLCK G +  A   L+ M K G   N+  YN +V+ + K G I+ AI + + M
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           EV     D+ TY++++   C+   +  A KLL   L  G++
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ 570



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 121/246 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+  +++GLCK+   D A  +   ++K G    +  YN ++ G+CKAG 
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++KE+  +G  P+AITYTT++    R        ++L  M  +G       +  
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNV 578

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F  +G L++    +  M+  G+  D ++YNTL+  +C    +     +   M  QG
Sbjct: 579 LMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG 638

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+ ILI G CKA N+K A    + M + G+   + +YN ++ R  K  K   A 
Sbjct: 639 VAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEAR 698

Query: 241 NVFESM 246
            +FE M
Sbjct: 699 ELFEEM 704



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 147/317 (46%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+  ++ G  +         +F  +   G  P+ VTY  LI   CKAG 
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE 448

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+   G  PN +TY  ++    ++ +     E+L  M++KG   +   Y +
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNS 508

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G +++A   M++M   G+  D ++Y T+I+ YC+ G ++ A+ LL EM  +G
Sbjct: 509 MVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRG 568

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T  +L++G C  G ++     L +M + G   +   YN ++ +      ++   
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTT 628

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +++ M       DS TY+ ++   CKA+ L  A  L    ++ G     ++  A++   
Sbjct: 629 KIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRF 688

Query: 297 RHSGCRREAKKIQSKIR 313
                  EA+++  ++R
Sbjct: 689 YKKRKFXEARELFEEMR 705



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 140/298 (46%), Gaps = 41/298 (13%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           ++G      +YNI+I  LC+ G+++ A  +L ++      P+ ++Y+T++       + K
Sbjct: 251 EYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELK 310

Query: 98  LGLEILSAMKRKG-----YTF------------------------------DGFGYCTVI 122
             L+++  M+ KG     YT+                              D   Y T+I
Sbjct: 311 KALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K+G ++ A  + ++M++  +  D ++Y TLI  + + GK+     L  EM  +G +
Sbjct: 371 HGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLK 430

Query: 183 CDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            D+ T+T LID  CKAG +  A  LH E M ++G   N+  Y  ++D L K G++D A  
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNE-MVQMGMTPNIVTYGALIDGLCKHGELDTANE 489

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + + M  K    +   Y+SMV+ +CKA  +  A KL+     +G+         V+D 
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA 547



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +  +++G  K  +   A + F  +      P+ +TY  LI+G  + G+
Sbjct: 354 MMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGK 413

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   + +  E+   G  P+ +TYTT++    +  +      + + M + G T +   Y  
Sbjct: 414 VIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGA 473

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A + +++M   G+QL++  YN+++N  CK G +E A  L+ EME  G
Sbjct: 474 LIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+T +ID  C+ G+I  A   L+ M   G    +  +N +++     G ++   
Sbjct: 534 IDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   M     V D+ TY++++   C    + + +K+       GV
Sbjct: 594 RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGV 639



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 107/230 (46%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N M+NG+CK    + A+++ + ++  G  P+ +TY  +I   C+ G +  A  +L+E+ 
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G  P  +T+  +M         + G  +L  M  KG   D   Y T++        + 
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
             T   ++M   GV  D  +YN LI  +CK   L+ A+ L  EM ++G+     ++  LI
Sbjct: 626 TTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
               K      AR   E M   G  ++ E YN  VD   ++G ++  +N+
Sbjct: 686 KRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNL 735



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 133/310 (42%), Gaps = 6/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+I    L +  +   A ++   L  +G V  + + N  +  +  A         
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRI--ANNSEGIEMA 245

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +K   + G + N  +Y  I+    R  K K    +L  M  +  T D   Y TVI  +  
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G LK+A   M+ M   G++ +  +YN++I L CK GK   A  +L EM  Q    D   
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LI G  K G+++ A    + M       +   Y  ++   G+ GK+    N+F  M 
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++   CKA  + +A  L    ++ G+        A++DGL   G   
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 304 EAKKIQSKIR 313
            A ++  ++R
Sbjct: 486 TANELLDEMR 495



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 81/170 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN+++NG C     ++  R+   + + G VP+ +TYN L+K  C    + T  
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTT 628

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I K + + G AP++ TY  ++K   + R  K    +   M  KGY      Y  +I  F
Sbjct: 629 KIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRF 688

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            K  +  EA +  E+M   G+  D   YN  +++  +EG +E    L DE
Sbjct: 689 YKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDE 738



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 107/237 (45%), Gaps = 11/237 (4%)

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFG-----YCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           F N K ++G+++     R  YT+  +G     +       V+IG L EA   ++++++ G
Sbjct: 161 FLNSKLEIGVKMTQFTHRLIYTYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYG 220

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           + + + S N  ++        E   + +    + G   +  ++ I+I  LC+ G +K A 
Sbjct: 221 LVVTVDSCNAFLSRIANNS--EGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAH 278

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
             L  M+      ++ +Y+ ++D     G++  A+ + + M++K    + +TY+S++  L
Sbjct: 279 RLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLL 338

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           CK  +   A K+L   +   +         ++ G    G  R A K   ++   KIS
Sbjct: 339 CKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKIS 395


>gi|334182559|ref|NP_001184987.1| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190929|gb|AEE29050.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 798

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 147/279 (52%), Gaps = 10/279 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   + NI++NGLC       AL +   + KHG  P+ VTYNIL KG    G + 
Sbjct: 251 CG-LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMIS 309

Query: 63  TARWILKELGDSGHAPNAITYTTIM--KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            A  +++++ D G +P+ ITYT ++  +C   N    +GL +L  M  +G+  +    C+
Sbjct: 310 GAWEVIRDMLDKGLSPDVITYTILLCGQCQLGN--IDMGLVLLKDMLSRGFELNSIIPCS 367

Query: 121 V-IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           V ++   K GR+ EA     QM  DG+  D+V+Y+ +I+  CK GK + A  L DEM  +
Sbjct: 368 VMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDK 427

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               +  TH  L+ GLC+ G +  AR  L+ +   G   ++  YN ++D   K G I+ A
Sbjct: 428 RILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEA 487

Query: 240 INVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           + +F    E+       T++S+++  CK + +  A K+L
Sbjct: 488 LELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 526



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 5/302 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ +++GLC+ +  ++A+   R  +     P +V++N ++ G CK G +  A+     +
Sbjct: 189 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 248

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  ++  ++            LE+ S M + G   D   Y  +   F  +G +
Sbjct: 249 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 308

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH-TI 190
             A + +  M+  G+  D+++Y  L+   C+ G ++   +LL +M  +GFE +     ++
Sbjct: 309 SGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSV 368

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           ++ GLCK G I  A      M   G   +L AY+ ++  L K GK D A+ +++ M    
Sbjct: 369 MLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKR 428

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            + +S T+ +++  LC+   L  A  LL S + SG  +       V+DG   SGC  EA 
Sbjct: 429 ILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEAL 488

Query: 307 KI 308
           ++
Sbjct: 489 EL 490



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 148/330 (44%), Gaps = 40/330 (12%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+++G  K+   + AL +F+ + + G  P + T+N LI G CK   +  AR IL  + 
Sbjct: 471 YNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 530

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G AP+ ++YTT+M         K   E+   MK +G       Y  +     +  + +
Sbjct: 531 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHE 590

Query: 133 EATDYMEQ------------MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                + +            M ++G+  D ++YNT+I   C+   L  A++ L+ M+ + 
Sbjct: 591 NCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRN 650

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ ILID LC  G I+ A   +  + +     +  AY  ++      G  + A+
Sbjct: 651 LDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAV 710

Query: 241 NVFESM-------EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK---SGVRILKSAQK 290
            +F  +        ++D   YS++++ LC+        + L++C     +GV  L S ++
Sbjct: 711 KLFHQLLHRGFNVSIRD---YSAVINRLCR--------RHLMNCFPGQSNGVCCLISNER 759

Query: 291 AVVD-GLRHSGCRREAKKIQSKIRMAKISH 319
           + V   +  + CRR    ++      K+SH
Sbjct: 760 SFVYCPILSANCRRHTLSVE------KLSH 783



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 5/266 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTA 64
           L+P   T+ I+L G C+    D  L + + +   GF +  ++  ++++ GLCK GR+  A
Sbjct: 323 LSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEA 382

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  ++   G +P+ + Y+ ++    +  K+ + L +   M  K    +   +  ++  
Sbjct: 383 LSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLG 442

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + G L EA   ++ +++ G  LDIV YN +I+ Y K G +E A  L   + + G    
Sbjct: 443 LCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPS 502

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T   LI G CK  NI  AR  L+ +   G   ++ +Y  ++D     G       +  
Sbjct: 503 VATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRR 562

Query: 245 SMEVK----DSFTYSSMVHNLCKAKR 266
            M+ +     + TYS +   LC+  +
Sbjct: 563 EMKAEGIPPTNVTYSVIFKGLCRGWK 588



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 16/206 (7%)

Query: 6   LTPCTATFNIMLNGL--CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           L P   ++  +++    C N  + + LR  R ++  G  P  VTY+++ KGLC+  +   
Sbjct: 534 LAPSVVSYTTLMDAYANCGNTKSIDELR--REMKAEGIPPTNVTYSVIFKGLCRGWKHEN 591

Query: 64  ARWILKE------------LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
              +L+E            +   G  P+ ITY TI++   R +        L  MK +  
Sbjct: 592 CNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNL 651

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
                 Y  +I +    G +++A  ++  +    V L   +Y TLI  +C +G  E A  
Sbjct: 652 DASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVK 711

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCK 197
           L  ++  +GF      ++ +I+ LC+
Sbjct: 712 LFHQLLHRGFNVSIRDYSAVINRLCR 737



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 22/259 (8%)

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRT---ARWILKELGDSGHAPNAITYTTIMKC 89
           FR  +  G V +++ +         + RLR    + +ILK++ D     +  +Y +++  
Sbjct: 117 FRKWESTGLVWDMLLF--------LSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVL-- 166

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
            +  R+     ++   +K K    +   Y TV+    +  +L++A  ++       +   
Sbjct: 167 -YHFRETDKMWDVYKEIKDK----NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPS 221

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +VS+N++++ YCK G ++ A      + K G     Y+H ILI+GLC  G+I  A     
Sbjct: 222 VVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELAS 281

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            MNK G + +   YN +       G I  A  V   M  K    D  TY+ ++   C+  
Sbjct: 282 DMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLG 341

Query: 266 RLPSASKLLLSCLKSGVRI 284
            +     LL   L  G  +
Sbjct: 342 NIDMGLVLLKDMLSRGFEL 360


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++G CK    D+A+ +   + + G    +VTY +L+ GLCK  ++  A  +L+ +
Sbjct: 330 TYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G   N + YTT++   F N+  +  L +LS MK KG   D   Y  +I     + +L
Sbjct: 390 EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKL 449

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA   + +M   G++ + + Y T+++   K GK+  A  +L ++   GF+ +  T+  L
Sbjct: 450 DEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCAL 509

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           IDGLCKAG+I  A  H   M  +G D N++AY  +VD L K+G ++ A+ +F  M  K  
Sbjct: 510 IDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGM 569

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D   Y++++    K   L  A  L    + SG+++        + G  +     EA++
Sbjct: 570 SLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEARE 629

Query: 308 IQSKI 312
           + S++
Sbjct: 630 VFSEM 634



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 4/310 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFNI+++ LCK      A  +F  +++ G +P++VT+N LI G  K G L     
Sbjct: 185 APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQ 244

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++E+  SG   + +TY  ++ C  +  + +      +AMKR+G   +   + T + AF 
Sbjct: 245 LVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G ++EA     QM   G+ L+  +Y  LI+  CK G+L+ A +LLDEM +QG   +  
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T+L+DGLCK   +  A   L  M K G  +N   Y  ++     +   + A+ +   M
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEM 424

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + K    D   Y +++  LC   +L  A  LL    +SG+         ++D    SG  
Sbjct: 425 KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKV 484

Query: 303 REAKKIQSKI 312
            EA  +  KI
Sbjct: 485 PEAIAMLQKI 494



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 129/282 (45%), Gaps = 43/282 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T N +L  L ++R      R+F  L      P + T+NI+I  LCK G L  AR
Sbjct: 153 VPPNTRTCNHILLRLARDRSGRLVRRLFEQLP----APNVFTFNIVIDFLCKEGELAEAR 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + + G  P+ +T+ +++                          DG+G C      
Sbjct: 209 SLFSRMKEMGCLPDVVTFNSLI--------------------------DGYGKC------ 236

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    +E+M   G + D+V+YN LIN +CK G++E AY     M+++G   + 
Sbjct: 237 ---GELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANV 293

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T +  +D  CK G ++ A      M   G   N   Y C++D   K G++D AI + + 
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDE 353

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M  +    +  TY+ +V  LCK +++  A  +L    K+GVR
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR 395



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 35/270 (12%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G   N+ ++ AL +   ++  G   ++  Y  LI+GLC   +L  A+ +L ++ 
Sbjct: 401 YTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMD 460

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +SG  PN I YTT+M  CF++ K    + +L  +   G+  +   YC +I    K G + 
Sbjct: 461 ESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSID 520

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA  +  +M   G+  ++ +Y  L++  CK G L  A  L +EM  +G   DK  +T L+
Sbjct: 521 EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580

Query: 193 DGLCKAGNI------------KGARLHL--------------------EYMNKI---GFD 217
           DG  K GN+             G +L L                    E  +++   G  
Sbjct: 581 DGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIA 640

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +   YNC++ +  K G ++ AI++ + ME
Sbjct: 641 PDRAVYNCLISKYQKLGNLEEAISLQDEME 670



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 92/199 (46%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  M++   K+     A+ M + +   GF P ++TY  LI GLCKAG +  A 
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++ D G  PN   YT ++    +N      +++ + M  KG + D   Y  ++  +
Sbjct: 524 SHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGY 583

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K G L +A     +M+  G+QLD+  Y   I+ +C    +  A  +  EM   G   D+
Sbjct: 584 LKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDR 643

Query: 186 YTHTILIDGLCKAGNIKGA 204
             +  LI    K GN++ A
Sbjct: 644 AVYNCLISKYQKLGNLEEA 662



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 80/176 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK    D A+  F  ++  G  P +  Y  L+ GLCK G L  A  +
Sbjct: 501 PNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQL 560

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+   G + + + YT ++    +         + + M   G   D F Y   I+ F  
Sbjct: 561 FNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCN 620

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +  + EA +   +M+  G+  D   YN LI+ Y K G LE A  L DEME+    C
Sbjct: 621 LNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSC 676



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T  I+ID LCK G +  AR     M ++G   ++  +N ++D  GK G++D    + E 
Sbjct: 189 FTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEE 248

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D  TY+++++  CK  R+ +A     +  + GV          VD     G 
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308

Query: 302 RREAKKIQSKIRM 314
            REA K+ +++R+
Sbjct: 309 VREAMKLFAQMRV 321


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 144/269 (53%), Gaps = 1/269 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+C+    D+A  +   L  +GF P++V+Y  ++KGLC A R    + 
Sbjct: 208 TPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKV 267

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  E+ D    PN +T+  +++   R    +  +++L  M + G T +      VI A  
Sbjct: 268 LFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAIC 327

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+ +A D++  M   G   D +SY T++   C+ G+ E A  LL EM ++    ++ 
Sbjct: 328 KQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEV 387

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T    I  LC+ G I+ A   +E M + G    +  YN +V      G++D A+ +F ++
Sbjct: 388 TFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL 447

Query: 247 EVK-DSFTYSSMVHNLCKAKRLPSASKLL 274
             + ++ TY++++  LC A+RL +A++LL
Sbjct: 448 PCEPNTITYTTLLTGLCHAERLDAAAELL 476



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 147/311 (47%), Gaps = 7/311 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TF++++   C+    + A+++ + + +HG  P     NI+I  +CK GR+  A  
Sbjct: 278 VPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYD 337

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L  +G  G  P+ I+YTT+++   R  +++   E+L  M RK    +   + T I    
Sbjct: 338 FLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILC 397

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G +++A   +E M   G  + IV+YN L++ +C +G++++A  L + +     E +  
Sbjct: 398 QKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTI 454

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L+ GLC A  +  A   L  M +     N   +N +V    + G ++ A+ +   M
Sbjct: 455 TYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQM 514

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                  +  T+++++  + K      A +LL   +  GV +      +VVD L      
Sbjct: 515 MEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRT 574

Query: 303 REAKKIQSKIR 313
            EA ++   ++
Sbjct: 575 EEAIQMLHAVQ 585



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 139/299 (46%), Gaps = 44/299 (14%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++  LC+   T +A R+ R  +  G   ++  YN L+ G C+ GRL  AR ++  +    
Sbjct: 80  LIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---P 136

Query: 76  HAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
             P+A TYT I++  C R R     L +L  M ++G       Y  ++ A  K     EA
Sbjct: 137 VPPDAYTYTPIIRGLCDRGRVGD-ALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEA 195

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
            + +++M   G   +IV+YN +IN  C+EG+++ A  +L+ +   GF+ D  ++T ++ G
Sbjct: 196 MNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKG 255

Query: 195 LCKA-----------------------------------GNIKGARLHLEYMNKIGFDSN 219
           LC A                                   G ++ A   L+ M++ G   N
Sbjct: 256 LCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPN 315

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
               N +++ + K G++D A +   +M +     D+ +Y++++  LC+A R   A +LL
Sbjct: 316 TTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELL 374



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 131/308 (42%), Gaps = 39/308 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++ GLC      +AL +   + + G  P +VTY +L++ +CK+     A 
Sbjct: 137 VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAM 196

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA- 124
            +L E+   G  PN +TY  I+    R  +     EIL+ +   G+  D   Y TV+   
Sbjct: 197 NVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGL 256

Query: 125 ----------------------------------FVKIGRLKEATDYMEQMVTDGVQLDI 150
                                             F + G ++ A   ++QM   G   + 
Sbjct: 257 CAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNT 316

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
              N +IN  CK+G+++ AY  L+ M   G   D  ++T ++ GLC+AG  + A+  L  
Sbjct: 317 TLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPE 376

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKR 266
           M +     N   +N  +  L + G I+ AI + E M          TY+++VH  C   R
Sbjct: 377 MVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGR 436

Query: 267 LPSASKLL 274
           + SA +L 
Sbjct: 437 VDSALELF 444



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 7/250 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A R+       G  P++     LI+ LC+ GR   A  +L+    SG   +   Y T++ 
Sbjct: 58  AARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVA 117

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R  +      ++++M       D + Y  +I      GR+ +A   ++ M+  G Q 
Sbjct: 118 GYCRYGRLDAARRLIASMPVPP---DAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQP 174

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
            +V+Y  L+   CK      A  +LDEM  +G   +  T+ ++I+G+C+ G +  A+  L
Sbjct: 175 SVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEIL 234

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKA 264
             ++  GF  ++ +Y  ++  L    + D    +F  M     V +  T+  +V   C+ 
Sbjct: 235 NRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRG 294

Query: 265 KRLPSASKLL 274
             +  A ++L
Sbjct: 295 GMVERAIQVL 304



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 94/198 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+  +L GLC     D A  +  G+ +       VT+N+L+   C+ G +  A  +
Sbjct: 451 PNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMEL 510

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++ + G  PN IT+ T++    ++   +  LE+L  +  KG + D   Y +V+    +
Sbjct: 511 VNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSR 570

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R +EA   +  +   G++  +  YN ++   CK  + + A      M   G   ++ T
Sbjct: 571 EDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNEST 630

Query: 188 HTILIDGLCKAGNIKGAR 205
           + ILI+GL   G +K AR
Sbjct: 631 YIILIEGLAHEGLLKEAR 648



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 7/210 (3%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +++     G AP+    T +++   R  +      +L   +  G   D F Y T
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNT 114

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++A + + GRL  A   +  M    V  D  +Y  +I   C  G++  A  LLD+M ++G
Sbjct: 115 LVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRG 171

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+T+L++ +CK+     A   L+ M   G   N+  YN I++ + ++G++D A 
Sbjct: 172 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 231

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKR 266
            +   +       D  +Y++++  LC A+R
Sbjct: 232 EILNRLSSYGFQPDIVSYTTVLKGLCAARR 261



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 3/244 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++G C     D+AL +F  L      P  +TY  L+ GLC A RL  A  +L  +
Sbjct: 423 TYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAELLAGM 479

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                  NA+T+  ++    +    +  +E+++ M   G T +   + T++    K    
Sbjct: 480 IQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNS 539

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA + +  +V+ GV LD ++Y++++++  +E + E A  +L  ++  G       +  +
Sbjct: 540 EEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKI 599

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           +  LCK      A     YM   G   N   Y  +++ L  +G +  A  V   +  K  
Sbjct: 600 LFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGV 659

Query: 252 FTYS 255
            + S
Sbjct: 660 LSKS 663



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 87/180 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D      TFN++++  C+  + + A+ +   + +HG  P L+T+N L+ G+ K   
Sbjct: 479 MIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCN 538

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L  L   G + + ITY++++    R  + +  +++L A++  G       Y  
Sbjct: 539 SEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNK 598

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K     +A D+   MV++G   +  +Y  LI     EG L+ A  +L E+  +G
Sbjct: 599 ILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKG 658



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   TFN +L+G+ K+  ++ AL +  GL   G   + +TY+ ++  L +  R   A  
Sbjct: 520 TPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQ 579

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  + D G  P    Y  I+    +  +    ++  + M   G   +   Y  +I    
Sbjct: 580 MLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLA 639

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G LKEA   + ++   GV
Sbjct: 640 HEGLLKEARYVLSELYAKGV 659



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 1/149 (0%)

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           L  A  L++    +G   D Y  T LI  LC+ G    A   L      G   ++ AYN 
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNT 114

Query: 226 IVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
           +V    + G++D A  +  SM V  D++TY+ ++  LC   R+  A  LL   L+ G + 
Sbjct: 115 LVAGYCRYGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQP 174

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
                  +++ +  S    EA  +  ++R
Sbjct: 175 SVVTYTVLLEAVCKSSGFGEAMNVLDEMR 203



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 7/186 (3%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA   +E   + G   D+     LI   C+ G+   A  +L   E  G   D + +  
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNT 114

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           L+ G C+ G +  AR  +  M       +   Y  I+  L   G++  A+ + + M  + 
Sbjct: 115 LVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRG 171

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
                 TY+ ++  +CK+     A  +L      G          +++G+   G   +AK
Sbjct: 172 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 231

Query: 307 KIQSKI 312
           +I +++
Sbjct: 232 EILNRL 237


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T++ ++N L      + AL +F  +  H  +P   TYN++IKG C  G 
Sbjct: 368 MLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGY 427

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  I  ++  +G +PN ITY  I+   F+       + +L  MK  G   D + Y  
Sbjct: 428 IQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYAN 487

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ F + G+L+ A     +MV  G+  ++V+YN +IN Y    K++ A  L  +M + G
Sbjct: 488 LISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG 547

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ ++I G  K   I  A      M K G   N+  Y   +D L K+G+   A 
Sbjct: 548 NVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAF 607

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLL 274
            +F  M+ +D F    TYSS++  LC+  +   A +LL
Sbjct: 608 KIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLL 645



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 148/317 (46%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P    + I +  LC    +  A+++   ++K G  P + TY  LI GL + G+
Sbjct: 298 MIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGK 357

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  ++   G  P A+TY+ ++   +   +++  L I   M       +   Y  
Sbjct: 358 FEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNV 417

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F  IG +++AT   +QM+  G   ++++YN +I++Y K+G +  A  LL+ M+  G
Sbjct: 418 IIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNG 477

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D +T+  LI G  + G ++ A      M + G   N+  YN I++      K+D A+
Sbjct: 478 LKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDAL 537

Query: 241 NVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F    ES  V  S TY+ M+    K  R+  A       +K G+        + +DGL
Sbjct: 538 ALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGL 597

Query: 297 RHSGCRREAKKIQSKIR 313
             +G    A KI  +++
Sbjct: 598 CKNGRTSLAFKIFHEMK 614



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 39/235 (16%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G  P L T+N +IK LC  G+++ A  I+  +   G  P+  TYT+++            
Sbjct: 197 GIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLI------------ 244

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
                            G+C       K G L  A +  ++MV DG   + V+Y+ LIN 
Sbjct: 245 ----------------IGHC-------KNGNLDLAFEMFDRMVKDGCDPNSVTYSALING 281

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            C EG+LE A  +L+EM  +G E   + +TI I  LC AG    A   L  M K G   N
Sbjct: 282 LCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPN 341

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSA 270
           ++ Y  ++  L +DGK + AI V+  M     V  + TYS++++ L    R  +A
Sbjct: 342 VQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETA 396



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 140/335 (41%), Gaps = 46/335 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+N ++NG       D+AL +F  + + G VP   TYN++I G  K  R
Sbjct: 508 MVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNR 567

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--------- 111
           +  A     ++   G  PN ITYT+ +    +N +  L  +I   MK++ Y         
Sbjct: 568 ISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSS 627

Query: 112 TFDGF----------------------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             DG                        Y T++      GR  EA   +E M   G+Q  
Sbjct: 628 LIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPS 687

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
              Y  L+   CK  ++E+A  + D M   GF+     +  LI  LCKA   + A+   +
Sbjct: 688 EEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQ 747

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAK- 265
            M K  ++S+   +  ++D L K+G+ D ++ +   ME ++   +F    M+     A  
Sbjct: 748 TMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVMLARELSALG 807

Query: 266 ---RLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
               +P  SK L         I+K  QK   D LR
Sbjct: 808 CSIEIPQISKQL--------GIVKEKQKQTADVLR 834



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 39/334 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN M+  LC       A  +   +  +G  P+  TY  LI G CK G 
Sbjct: 193 MLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGN 252

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNR---------------------KYKL 98
           L  A  +   +   G  PN++TY+ ++   C   R                      Y +
Sbjct: 253 LDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTI 312

Query: 99  -------------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                         +++L  MK++G   +   Y  +I+   + G+ + A     +M+ DG
Sbjct: 313 PIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADG 372

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +    V+Y+ LIN    EG+ E A  + + M       +  T+ ++I G C  G I+ A 
Sbjct: 373 LVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKAT 432

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
              + M K G   N+  YN I+    K G +++A+ + E M+      D++TY++++   
Sbjct: 433 AIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGF 492

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +  +L  A  L    ++ G+        A+++G
Sbjct: 493 SRGGKLEHAFSLFNEMVEHGISPNVVTYNAIING 526



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 36/231 (15%)

Query: 86  IMKCCFRNRKYKLGLEILSAMKRK---GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
           ++K C    + K  +++LS +      GYT   + + T++    K        D   +M+
Sbjct: 137 MIKSCRNEGEVKRVIQVLSEINTTYDFGYTL--YSFSTLLIQLGKFDMDGLGRDVYIEML 194

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
             G++ ++ ++N +I + C +GK++ A L++  +   G   D +T+T LI G CK GN+ 
Sbjct: 195 NSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLD 254

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLC 262
            A    + M K G D N                               S TYS++++ LC
Sbjct: 255 LAFEMFDRMVKDGCDPN-------------------------------SVTYSALINGLC 283

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
              RL  A  +L   +  G+     A    +  L  +G   EA K+  K++
Sbjct: 284 SEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMK 334


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 144/269 (53%), Gaps = 1/269 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+C+    D+A  +   L  +GF P++V+Y  ++KGLC A R    + 
Sbjct: 219 TPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKV 278

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  E+ D    PN +T+  +++   R    +  +++L  M + G T +      VI A  
Sbjct: 279 LFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAIC 338

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+ +A D++  M   G   D +SY T++   C+ G+ E A  LL EM ++    ++ 
Sbjct: 339 KQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEV 398

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T    I  LC+ G I+ A   +E M + G    +  YN +V      G++D A+ +F ++
Sbjct: 399 TFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL 458

Query: 247 EVK-DSFTYSSMVHNLCKAKRLPSASKLL 274
             + ++ TY++++  LC A+RL +A++LL
Sbjct: 459 PCEPNTITYTTLLTGLCHAERLDAAAELL 487



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 143/312 (45%), Gaps = 36/312 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF++++   C+    + A+++ + + +HG  P     NI+I  +CK GR+  A   
Sbjct: 290 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 349

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +G  G  P+ I+YTT+++   R  +++   E+L  M RK    +   + T I    +
Sbjct: 350 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQ 409

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG----------------------- 164
            G +++A   +E M   G  + IV+YN L++ +C +G                       
Sbjct: 410 KGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTT 469

Query: 165 ---------KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
                    +L+AA  LL EM ++    +  T  +L+   C+ G ++ A   +  M + G
Sbjct: 470 LLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG 529

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              NL  +N ++D + KD   + A+ +   +  K    D+ TYSS+V  L +  R   A 
Sbjct: 530 CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAI 589

Query: 272 KLLLSCLKSGVR 283
           ++L +    G+R
Sbjct: 590 QMLHAVQDMGMR 601



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 117/276 (42%), Gaps = 39/276 (14%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           + G  P +VTY +L++ +CK+     A  +L E+   G  PN +TY  I+    R  +  
Sbjct: 180 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 239

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAA--------------------------------- 124
              EIL+ +   G+  D   Y TV+                                   
Sbjct: 240 DAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLV 299

Query: 125 --FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F + G ++ A   ++QM   G   +    N +IN  CK+G+++ AY  L+ M   G  
Sbjct: 300 RFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCN 359

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  ++T ++ GLC+AG  + A+  L  M +     N   +N  +  L + G I+ AI +
Sbjct: 360 PDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKL 419

Query: 243 FESMEVKDS----FTYSSMVHNLCKAKRLPSASKLL 274
            E M          TY+++VH  C   R+ SA +L 
Sbjct: 420 IELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF 455



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 3/244 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++G C     D+AL +F  L      P  +TY  L+ GLC A RL  A  +L E+
Sbjct: 434 TYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAELLAEM 490

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                  NA+T+  ++    +    +  +E+++ M   G T +   + T++    K    
Sbjct: 491 IQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNS 550

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA + +  +V+ GV LD ++Y++++++  +E + E A  +L  ++  G       +  +
Sbjct: 551 EEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKI 610

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           +  LCK      A     YM   G   N   Y  +++ L  +G +  A  V   +  K  
Sbjct: 611 LFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGV 670

Query: 252 FTYS 255
            + S
Sbjct: 671 LSKS 674



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 93/198 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+  +L GLC     D A  +   + +       VT+N+L+   C+ G +  A  +
Sbjct: 462 PNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMEL 521

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++ + G  PN IT+ T++    ++   +  LE+L  +  KG + D   Y +V+    +
Sbjct: 522 VNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSR 581

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R +EA   +  +   G++  +  YN ++   CK  + + A      M   G   ++ T
Sbjct: 582 EDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNEST 641

Query: 188 HTILIDGLCKAGNIKGAR 205
           + ILI+GL   G +K AR
Sbjct: 642 YIILIEGLAHEGLLKEAR 659



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
           S M ++G       Y  ++ A  K     EA + +++M   G   +IV+YN +IN  C+E
Sbjct: 176 STMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCRE 235

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA------------------------- 198
           G+++ A  +L+ +   GF+ D  ++T ++ GLC A                         
Sbjct: 236 GRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTF 295

Query: 199 ----------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
                     G ++ A   L+ M++ G   N    N +++ + K G++D A +   +M +
Sbjct: 296 DMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGM 355

Query: 249 ----KDSFTYSSMVHNLCKAKRLPSASKLL 274
                D+ +Y++++  LC+A R   A +LL
Sbjct: 356 YGCNPDTISYTTVLRGLCRAGRWEHAKELL 385



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   TFN +L+G+ K+  ++ AL +  GL   G   + +TY+ ++  L +  R   A  
Sbjct: 531 TPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQ 590

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  + D G  P    Y  I+    +  +    ++  + M   G   +   Y  +I    
Sbjct: 591 MLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLA 650

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G LKEA   + ++   GV
Sbjct: 651 HEGLLKEARYVLSELYAKGV 670


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 140/276 (50%), Gaps = 7/276 (2%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P   T+N ++ GLCK  Y  +A  +   +Q  G  P ++TY ILI   CK GRL 
Sbjct: 385 CG---PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLE 441

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            AR +L E+   G A NA+ Y  ++    ++ K +  L +   M  KG   D F + ++I
Sbjct: 442 EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI 501

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K+ + +EA    + M+ +GV  + ++YNTLI+ + + G ++ A  L+++M  +G  
Sbjct: 502 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCP 561

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+  LI  LC+AGNI+      E M   G + N  + N +++ L + G I HA+  
Sbjct: 562 LDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEF 621

Query: 243 FESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
              M       D  TY+S+++ LCK  R   A  L 
Sbjct: 622 LRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 657



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 160/344 (46%), Gaps = 36/344 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF +++  LC     D+A  + + + +HG VP  + Y  LI  L K GR
Sbjct: 208 MLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGR 267

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-- 118
           +     +L+E+   G  P+  T+   +    +  +     +++  M  +G+T + F Y  
Sbjct: 268 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 327

Query: 119 -----C------------------------TVIAAFVKIGRLKEATDYM-EQMVTDGVQL 148
                C                        T+I  +V  GRL EA   M E M++ G   
Sbjct: 328 LMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 387

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DI +YNTLI   CK+G L +A  L++EM+ +G E +  T+TILID  CK G ++ AR  L
Sbjct: 388 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 447

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           + M+  G   N   YNC++  L KD K+  A+N+F  M  K    D FT++S++  LCK 
Sbjct: 448 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKV 507

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +   A  L    L  GV         ++      G  +EA K+
Sbjct: 508 NKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 551



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 108/227 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLCK    + AL +++ +   G +   +TYN LI    + G ++ A  +
Sbjct: 492 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 551

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G   + ITY  ++K   R    + GL +   M  KG   +      +I    +
Sbjct: 552 VNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 611

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A +++  M+  G+  DIV+YN+LIN  CK G+ + A  L D+++ +G   D  T
Sbjct: 612 TGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAIT 671

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +  LI   CK G    A L L      GF  N   +  +V    K+G
Sbjct: 672 YNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 718



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 97/191 (50%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N +++   +      AL++   +   G   + +TYN LIK LC+AG +     + +
Sbjct: 529 TITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFE 588

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G  PN I+   ++    R    +  LE L  M  +G T D   Y ++I    K G
Sbjct: 589 DMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTG 648

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R +EA +  +++  +G+  D ++YNTLI+ +CKEG  + A+LLL      GF  ++ T  
Sbjct: 649 RAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWY 708

Query: 190 ILIDGLCKAGN 200
           IL+    K G+
Sbjct: 709 ILVSNFIKEGD 719



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 9/237 (3%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P   +YN+++  L      +    +  E+   G +P   T+  +MK      +      +
Sbjct: 180 PTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACAL 239

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  M R G   +   Y T+I A  K+GR+ E    +E+M+  G   D+ ++N  I+  CK
Sbjct: 240 LKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK 299

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
             ++  A  L+D M  +GF  + +T+ +L+ GLC+ G +  AR+ L   NK+  + N+  
Sbjct: 300 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLL---NKVP-NPNVVL 355

Query: 223 YNCIVDRLGKDGKIDHAINVF-ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           +N +++     G++D A  V  ESM       D FTY++++  LCK   L SA +L+
Sbjct: 356 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELM 412



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   + NI++NGLC+     +AL   R +   G  P++VTYN LI GLCK GR
Sbjct: 590 MMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGR 649

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +  +L   G  P+AITY T++    +   +     +LS     G+  +   +  
Sbjct: 650 AQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYI 709

Query: 121 VIAAFVKIG 129
           +++ F+K G
Sbjct: 710 LVSNFIKEG 718



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 1/240 (0%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTA-RWILKELGDSGHAPNAITYTTIMKCCFRNR 94
           +++ G V     + +++K   +AG    A R +L   G     P   +Y  ++       
Sbjct: 137 MKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGN 196

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
             K+   +   M  KG +   + +  V+ A   +  +  A   ++ M   G   + + Y 
Sbjct: 197 CPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQ 256

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           TLI+   K G++     LL+EM   G   D  T    I GLCK   I  A   ++ M   
Sbjct: 257 TLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLR 316

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           GF  N   Y  ++  L + GK+D A  +   +   +   ++++++      RL  A  ++
Sbjct: 317 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVM 376


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 151/300 (50%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++    ++NI++ G C     +  LR F  ++++  +P +VTYN +I   CK  R
Sbjct: 194 MIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKR 253

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ +G  G  PN +TY  ++    R  + +    +L+ M RKG+  DG  Y T
Sbjct: 254 IDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNT 313

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K+G   +A     +M+ +G+  D+V+Y +LIN  CK G L  A    D+M  +G
Sbjct: 314 LVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRG 373

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T LI+G  + G +  A    + M + GF   +  YN +++     G+++ AI
Sbjct: 374 LRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAI 433

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME K    D  +YS+++   C+ + L  A ++    ++ GV        +++ GL
Sbjct: 434 GLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGL 493



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 155/312 (49%), Gaps = 6/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N+++NGLC+    +    +   + + GF P+ VTYN L+ G CK G    A 
Sbjct: 269 LEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQAL 328

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  +G  P+ +TYT+++    +       +E    M  +G   +G  Y ++I  F
Sbjct: 329 VLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGF 388

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA    ++M+  G    IV+YN L+N +C  G++E A  LL  ME +G   D 
Sbjct: 389 SQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDV 448

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +++ +I G C+   +  A +++ E + K G   +   Y+ ++  L +  +++ A ++F+
Sbjct: 449 VSYSTIIAGFCRYQELDRAFQMNAEMVEK-GVSPDAITYSSLIQGLCEQRRLNEACDLFQ 507

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M  K    D FTY+S+++  CK   L  A  L    +K G          +++GL    
Sbjct: 508 EMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQA 567

Query: 301 CRREAKKIQSKI 312
             REAK++  K+
Sbjct: 568 RTREAKRLLLKL 579



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 146/287 (50%), Gaps = 19/287 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  ++NG  +  + D A R++  + + GF P +VTYN L+ G C +GR+  A 
Sbjct: 374 LRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAI 433

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ +   G +P+ ++Y+TI+    R ++     ++ + M  KG + D   Y ++I   
Sbjct: 434 GLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGL 493

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  RL EA D  ++M+   +  D  +Y +LIN YCKEG L  A  L DEM K+GF  D 
Sbjct: 494 CEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDT 553

Query: 186 YTHTILIDGLCKAGNIKGAR---LHLEY----MNKIGFDSNLEAYN--------CIVDRL 230
            T+ +LI+GL K    + A+   L L Y     N I +D+ +E+ +         ++   
Sbjct: 554 VTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGF 613

Query: 231 GKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
              G ++ A  VFESM    +  +   Y+ ++H  C+   +  A KL
Sbjct: 614 CMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKL 660



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 138/273 (50%), Gaps = 7/273 (2%)

Query: 8   PCTATFNIMLNGLCKNR-YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   ++N +L+ + + R     A +++R +   G    + +YNILI+G C AG L     
Sbjct: 165 PGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLR 224

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             +E+  +   PN +TY T++    + ++     ++L +M  +G   +   Y  VI    
Sbjct: 225 FFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLC 284

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++GR++E +  + +M   G   D V+YNTL+N YCK G    A +L  EM + G   D  
Sbjct: 285 RVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVV 344

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LI+ +CKAGN+  A    + M+  G   N   Y  +++   + G +D A  +++ M
Sbjct: 345 TYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEM 404

Query: 247 EVKDSF-----TYSSMVHNLCKAKRLPSASKLL 274
            ++  F     TY+++++  C + R+  A  LL
Sbjct: 405 -IRSGFPPTIVTYNALLNGHCVSGRMEEAIGLL 436



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 147/319 (46%), Gaps = 19/319 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  ++N +CK    + A+  F  +   G  P  VTY  LI G  + G 
Sbjct: 334 MLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGF 393

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I  E+  SG  P  +TY  ++     + + +  + +L  M+ KG + D   Y T
Sbjct: 394 MDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYST 453

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IA F +   L  A     +MV  GV  D ++Y++LI   C++ +L  A  L  EM  + 
Sbjct: 454 IIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS 513

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D++T+T LI+G CK G++  A  LH E + K GF  +   YN +++ L K  +   A
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKK-GFLPDTVTYNVLINGLNKQARTREA 572

Query: 240 ----INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS-CLK-----------SGVR 283
               + +F    + +  TY +++ + C      S   L+   C+K           S ++
Sbjct: 573 KRLLLKLFYDESIPNGITYDTLIES-CSDIEFKSVVALIKGFCMKGLMNEADQVFESMIK 631

Query: 284 ILKSAQKAVVDGLRHSGCR 302
             +   +AV + + H  CR
Sbjct: 632 RNQKPNEAVYNVIIHGHCR 650



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 153/301 (50%), Gaps = 5/301 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-LRTARWIL 68
           +A F++++       + + AL +    + +GF+P +++YN ++  + +  + +  A  + 
Sbjct: 132 SAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVY 191

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           +E+  SG + N  +Y  +++        ++GL     M+R     +   Y TVI A+ K+
Sbjct: 192 REMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKL 251

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
            R+ EA   +  M  +G++ ++++YN +IN  C+ G++E    +L EM+++GF  D  T+
Sbjct: 252 KRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTY 311

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
             L++G CK GN   A +    M + G   ++  Y  +++ + K G ++ A+  F+ M V
Sbjct: 312 NTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHV 371

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           +    +  TY+S+++   +   +  A ++    ++SG         A+++G   SG   E
Sbjct: 372 RGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEE 431

Query: 305 A 305
           A
Sbjct: 432 A 432



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 116/262 (44%), Gaps = 35/262 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  ++NG CK    + AL +   + K GF+P+ VTYN+LI GL K  R
Sbjct: 509 MLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQAR 568

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R A+ +L +L      PN ITY T+++ C             S ++ K           
Sbjct: 569 TREAKRLLLKLFYDESIPNGITYDTLIESC-------------SDIEFKSVV-------A 608

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F   G + EA    E M+    + +   YN +I+ +C++G +  A+ L  EM   G
Sbjct: 609 LIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFG 668

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-------SNLEAYNCIVDRLGKD 233
           F      HT+ I  L KA   +G     E +N +  D       S+ E    +V    K+
Sbjct: 669 F----IPHTVTIIALVKALYSEGMD---EQLNLVIRDILRSCKLSDAELSKALVQINHKE 721

Query: 234 GKIDHAINVFESMEVKDSFTYS 255
           G ID   N+   M  KD F  S
Sbjct: 722 GNIDAVFNLLTEM-AKDGFLPS 742



 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 7/153 (4%)

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGL--CKAGNIKGARLHLEYMNKIGFDSNLEAY 223
           +E A  ++D  +  GF     ++  ++D +  C+   I   +++ E M   G   N+ +Y
Sbjct: 148 IEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYRE-MIASGVSLNVFSY 206

Query: 224 NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           N ++      G ++  +  FE ME    + +  TY++++   CK KR+  A KLL S   
Sbjct: 207 NILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGL 266

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            G+         V++GL   G   E   + +++
Sbjct: 267 EGLEPNLLTYNMVINGLCRVGRIEETSGVLAEM 299



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 52/115 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +  P  A +N++++G C++     A ++++ +   GF+P  VT   L+K L   G 
Sbjct: 629 MIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGM 688

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
                 +++++  S    +A     +++   +         +L+ M + G+   G
Sbjct: 689 DEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLPSG 743


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 159/335 (47%), Gaps = 42/335 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---------------- 44
           MI     P   TF I+L GLC++   + A ++   +++ G VP+                
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 45  -------------------LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                              +VTY  ++ GLCKAGR + A  +L E+ D G +PN  TY  
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           I++     RK     ++L  M  +GY  D   Y + I    K  R+ EA  ++ +M    
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---P 177

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V  D+VSY T+IN  CK G L++A  +LD+M  +G   D  T++ LIDG CK G ++ A 
Sbjct: 178 VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAM 237

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
             L+ M K+G   N+ AYN ++  L + G I  A ++   ME      D  +Y++ +  L
Sbjct: 238 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 297

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           CKA+R+  A  +    ++ G     S+   +V+ L
Sbjct: 298 CKAERVKKAKAVFDRMVERGCTPNASSYSMLVEEL 332



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 159/314 (50%), Gaps = 7/314 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK   T +A+++   ++  G  P + TYN++++GLC+  +L  A+ +
Sbjct: 78  PTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKM 137

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G+ P+ +TY + +K   +  +     + L+ M     T D   Y TVI    K
Sbjct: 138 LEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCK 194

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L  A+  ++QM   G   D+V+Y++LI+ +CK G++E A  LLD M K G   +   
Sbjct: 195 SGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVA 254

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+  L + G+I  A   L  M + GF  ++ +YN  +D L K  ++  A  VF+ M 
Sbjct: 255 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMV 314

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 ++ +YS +V  LCK K L  A  L+    +    +       ++DGL   G   
Sbjct: 315 ERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFD 374

Query: 304 EAKKIQSKIRMAKI 317
           EA  + SK+   KI
Sbjct: 375 EACALFSKVLDEKI 388



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 144/280 (51%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   ++  ++NGLCK+   D+A RM   +   G  P++VTY+ LI G CK G +  A 
Sbjct: 178 VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAM 237

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +   G  PN + Y +++    R        ++L  M+R+G+T D   Y   I   
Sbjct: 238 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 297

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+K+A    ++MV  G   +  SY+ L+   CK+ +L+ A  L+++  ++    D 
Sbjct: 298 CKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDI 357

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +T+L+DGLCK G    A  L  + +++   + ++  YN ++D   K  +ID A+ + +
Sbjct: 358 LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHK 417

Query: 245 SMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            M  ++     T++ +VH LC   RL  A  +LL+ +  G
Sbjct: 418 QMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEG 457



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 113/229 (49%), Gaps = 1/229 (0%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D    P+A T+  +++   R+ + +   ++L  MK  G   D   Y  +I+ + K     
Sbjct: 3   DKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFG 62

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A  ++ +MV +     +V+Y  +++  CK G+ + A  LLDEM  +G   + YT+ +++
Sbjct: 63  QAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIV 122

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-KDS 251
           +GLC+   +  A+  LE M   G+  ++  YN  +  L K  ++D A      M V  D 
Sbjct: 123 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDV 182

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +Y+++++ LCK+  L SAS++L      G         +++DG    G
Sbjct: 183 VSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGG 231



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 119/276 (43%), Gaps = 35/276 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +L  L +  +   A  M   +++ GF P++V+YN  I GLCKA R++ A+ +
Sbjct: 250 PNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAV 309

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + + G  PNA +Y+ +++   + ++    + ++   + K    D   Y  ++    K
Sbjct: 310 FDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCK 369

Query: 128 IGRLKEATDYMEQMVTDGV-------------------QLD----------------IVS 152
            GR  EA     +++ + +                   Q+D                +V+
Sbjct: 370 GGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVT 429

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +N L++  C + +L  A  +L  M  +GF  D  T+  L+D +CK G    A    E   
Sbjct: 430 WNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAV 489

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           K G   ++  Y+ ++  L  +   + A  +F  ++V
Sbjct: 490 KGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDV 525



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 9/241 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N+ML+  CK R  D AL++ + + +      +VT+NIL+ GLC   RL  A  +
Sbjct: 391 PDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC-NVVTWNILVHGLCVDDRLSDAETM 449

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  + D G  P+ +TY T++    +  K    LE+     + G   D   Y  +I   V 
Sbjct: 450 LLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVH 509

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
               +EA  Y+  + T   +LD+  +N +I  Y + G  +    L  E+ +   E +  T
Sbjct: 510 ENMAEEA--YL--LFT---KLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNART 562

Query: 188 HTILIDG-LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
               I G L KA ++  AR   +   K GF  +L   N ++D   K G ++ A  +F SM
Sbjct: 563 FGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSM 622

Query: 247 E 247
           +
Sbjct: 623 K 623



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 8/179 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  +++ +CK   +  AL +F    K G VP++VTY+ LI GL     
Sbjct: 453 MVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENM 512

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  +L       +   +  ++     N    LGL++   +       +   +  
Sbjct: 513 AEEAYLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGK 565

Query: 121 VIAA-FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            I+   VK   L +A    ++ V  G   D+   NTLI+++ K G LE A  +   M++
Sbjct: 566 EISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 155/305 (50%), Gaps = 7/305 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            A +N ++ GLCK R   +AL +   +  +G+   +VTY  LI GLCK+G L  A+ +L+
Sbjct: 10  AAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQ 69

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++ D+G APN +TYT ++    + R+    ++ +  M R G   D   Y ++I       
Sbjct: 70  KMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMAN 129

Query: 130 RLKEATDYMEQ-MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           R+ +A   +++ M+  G   D+V+YNT I+  CK GKL+    +L+EM++ G   D  T 
Sbjct: 130 RMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTF 189

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
             +I GLCKA  I  A    + M + G   +   Y+ ++D L +  ++D    V E M V
Sbjct: 190 CSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHM-V 248

Query: 249 KD-----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           K      S TY+ ++H L +A  + SAS      +++G  +      A +  L  SG   
Sbjct: 249 KSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFP 308

Query: 304 EAKKI 308
            AK I
Sbjct: 309 LAKNI 313



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 141/280 (50%), Gaps = 5/280 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+  +++GLCK R   +A++  + + + G  P+LVTYN LI GLC A R+  A  
Sbjct: 77  APNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGL 136

Query: 67  ILKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +L+EL  +SG  P+ +TY T +    +  K   GLE+L  M R G + D   +C++I+  
Sbjct: 137 VLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGL 196

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ +A    + M+  G   D ++Y+ +++   +  +L+    +L+ M K G     
Sbjct: 197 CKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALS 256

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-- 243
            T+  LI  L +AG+I+ A    E   + G    +  +N  +  L + GK   A N+   
Sbjct: 257 ATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLG 316

Query: 244 --ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             ES  + +  +Y+ ++  LCK+  +  A KL    L SG
Sbjct: 317 MIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSG 356



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 8   PCTATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T+N +++GLC  NR  D  L +   + + G +P++VTYN  I GLCKAG+L     
Sbjct: 113 PDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLE 172

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+   G +P+ +T+ +I+    +  +     ++   M  +G   D   Y  ++    
Sbjct: 173 MLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLS 232

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  RL    + +E MV  G      +Y  LI+   + G +E+A    ++  + G   + Y
Sbjct: 233 RANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVY 292

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           TH   I  LC++G    A+  L  M + G   NL +YN ++D L K G +D A  +   M
Sbjct: 293 THNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKM 352

Query: 247 E-----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
                   D   +++++   CKA RL  A +LL
Sbjct: 353 LDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLL 385



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 137/280 (48%), Gaps = 6/280 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+N  ++GLCK    D  L M   + + G  P++VT+  +I GLCKA R
Sbjct: 142 MIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANR 201

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + K + + G  P+++TY+ ++    R  +     E+L  M + G+      Y  
Sbjct: 202 IDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAP 261

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A ++ G ++ A+   EQ +  G  +++ ++N  I   C+ GK   A  +L  M + G
Sbjct: 262 LIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESG 321

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  ++  +IDGLCK+GN+  A +L  + ++      ++  +N ++    K G++  A
Sbjct: 322 SLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQA 381

Query: 240 INVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             + + M+     V D  TY++M+    K   L  A  LL
Sbjct: 382 QQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLL 421



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 5/208 (2%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           +A  Y T++    + RK +  LE+L  M   GY      Y T+I    K G L  A   +
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           ++M   G   ++V+Y  LI+  CK  +   A   +  M + G E D  T+  LI GLC A
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMA 128

Query: 199 GNIKGARLHL-EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
             +  A L L E M + G   ++  YN  +  L K GK+D  + + E M+      D  T
Sbjct: 129 NRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVT 188

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           + S++  LCKA R+  A ++    L+ G
Sbjct: 189 FCSIISGLCKANRIDDAFQVFKGMLERG 216



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 5/182 (2%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M  + +  D   Y T+IA   K  + + A + +  M  +G    +V+Y TLI+  CK G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           L+AA  LL +M   G   +  T+T LIDGLCKA     A   ++ M + G + +L  YN 
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 226 IVDRLGKDGKIDHAINVF-----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
           ++  L    ++D A  V      ES  + D  TY++ +  LCKA +L    ++L    + 
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG 180

Query: 281 GV 282
           G+
Sbjct: 181 GI 182



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 72/249 (28%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G ++P   TF  +++GLCK    D+A ++F+G+ + G VP+ +TY+I++  L +A RL T
Sbjct: 180 GGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDT 239

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCF-------------------------------- 91
              +L+ +  SGH   + TY  ++                                    
Sbjct: 240 VEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIG 299

Query: 92  ---RNRKYKLGLEILSAMKRKG---------YTFDGF-------------------GYC- 119
              R+ K+ L   IL  M   G         +  DG                    G C 
Sbjct: 300 ALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCK 359

Query: 120 -------TVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYL 171
                  T+I+ F K GRL +A   +++M    + + D+V+YNT+I+   K G L+ A L
Sbjct: 360 PDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKL 419

Query: 172 LLDEMEKQG 180
           LL+EM+  G
Sbjct: 420 LLEEMQAVG 428


>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
          Length = 550

 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 144/294 (48%), Gaps = 4/294 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ GL K   T+ A R+ + +   G +P+++TYN+L+ GLCK G L+TA  +L E+  SG
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSG 230

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+AITY TI++C F +  +   +       RKG       Y  +I    K     +A 
Sbjct: 231 CPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAM 290

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + +E M  +G   DIV+YN+L+N  CK+GK E   L++  +   G   +  T+  L+  L
Sbjct: 291 EVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSL 350

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDS 251
           C  G        L  MN       +  YN +++ L K G +D AIN F+ M     + D 
Sbjct: 351 CTHGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDI 410

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            TY++++  LCK   +  A  LL S   +           V+DGL   GC  +A
Sbjct: 411 ITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKA 464



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 35/237 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ +++  +CK+  T  A+ +   +   G  P++VTYN L+   CK G+      I+  L
Sbjct: 272 TYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNL 331

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN +TY T++     +  +    EIL  M           Y  +I    K G L
Sbjct: 332 LSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLL 391

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD----------------- 174
             A ++ +QMV+     DI++YNTL+   CKEG ++ A  LL                  
Sbjct: 392 DRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIV 451

Query: 175 ------------------EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
                             EM ++GF  D  TH  L  GL +   ++ A + L+ MNK
Sbjct: 452 IDGLAKKGCMEKAMGLYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNK 508



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI++NGLCK    D A+  F  +  H  +P+++TYN L+  LCK G +  A  +
Sbjct: 373 PTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHL 432

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  L D+  +P  ITY  ++    +    +  + +   M  +G+  D   + T+     +
Sbjct: 433 LHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMGLYGEMIERGFAPDDITHRTLFWGLFR 492

Query: 128 IGRLKEATDYMEQM 141
           +  +++A   +++M
Sbjct: 493 LDLVEDALVILKEM 506



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+N +L  LCK    D AL +   L      P L+TYNI+I GL K G 
Sbjct: 401 MVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGC 460

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           +  A  +  E+ + G AP+ IT+ T+    FR    +  L IL  M ++
Sbjct: 461 MEKAMGLYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKR 509


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 148/316 (46%), Gaps = 41/316 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++ LCK+   D    +F  ++  G  P++V Y+ +I G+C  GR   A+
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+  ++    +  K +    +L  M ++G + D F Y T+I  F
Sbjct: 294 GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGF 353

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----------------------- 162
              GR+ +A D    M + G++ D VSYN LIN YCK                       
Sbjct: 354 CLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTV 413

Query: 163 ------------EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                       EGK+  A+ L  EM+      +  T+ IL+DGLCK  ++  A     Y
Sbjct: 414 ITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHY 473

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-----ESMEVKDSFTYSSMVHNLCKAK 265
           +    F  +++ +NC++D L K  KI+ A  +F     E +E  +  TY+ M+H LCK+ 
Sbjct: 474 LENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLE-PNVITYTVMIHGLCKSG 532

Query: 266 RLPSASKLLLSCLKSG 281
           +L +A  L L   + G
Sbjct: 533 QLENAKDLFLGMEEKG 548



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 160/323 (49%), Gaps = 10/323 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T NI++N  C     D  L +   + + G  P  VT+  L+KGLC   R+  A 
Sbjct: 123 LAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEAT 182

Query: 66  WILKELGDSGHAPNAITYTTIMK--CCFRNR--KYKLGLEILSAMKRKGYTFDG--FGYC 119
            +L+++   G+ PN +TY T++   C   N     KL  E+L+     G T       YC
Sbjct: 183 GLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYC 242

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I +  K G + +  +   +M   G+  D+V+Y+++I+  C  G+ E A  L +EM  +
Sbjct: 243 TIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDE 302

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   +  T  +LID LCKAG ++ A   L+ M + G   +   YN ++D    +G+ID A
Sbjct: 303 GVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDA 362

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            ++F SME K    D+ +Y+ +++  CK+ R+  A KL    +   +         ++ G
Sbjct: 363 RDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTG 422

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
           L   G  R+A  +  ++++  ++
Sbjct: 423 LFREGKVRDAWNLFGEMKVHDLT 445



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 120/244 (49%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P T T+N +++G C     D+A  +F  ++  G   + V+YN+LI G CK+GR+  A+ 
Sbjct: 340 SPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKK 399

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +E+      P  ITY T++   FR  K +    +   MK    T +   Y  ++    
Sbjct: 400 LYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLC 459

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K   L EA +    +     Q  I  +N LI+  CK  K+E A  L + +  +G E +  
Sbjct: 460 KNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVI 519

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T++I GLCK+G ++ A+     M + G   NL  +N ++    ++ ++   + + + M
Sbjct: 520 TYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEM 579

Query: 247 EVKD 250
             KD
Sbjct: 580 AEKD 583



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 35/193 (18%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DLTP + T+NI+L+GLCKN +   A+ +F  L+ H F P +  +N LI GLCKA ++  A
Sbjct: 443 DLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIA 502

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +   L   G  PN ITYT ++                             G C     
Sbjct: 503 RELFNRLSHEGLEPNVITYTVMIH----------------------------GLC----- 529

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+L+ A D    M   G   ++V++NTL+  +C+  +++    LL EM ++ F  D
Sbjct: 530 --KSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPD 587

Query: 185 KYTHTILIDGLCK 197
             T +I++D L K
Sbjct: 588 ASTISIVVDLLSK 600



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A  +F  L      P + ++N L+  + K  R      + K +   G AP+ IT   ++ 
Sbjct: 76  AFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILIN 135

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           C     K   GL +L  M R+G++ +   + +++       R+ EAT  + +MV  G + 
Sbjct: 136 CYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRP 195

Query: 149 DIVSYNTLIN-----------------------------------------LYCKEGKLE 167
           ++V+Y TL+N                                           CK+G ++
Sbjct: 196 NVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLID 255

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
               L  EM+ +G   D   ++ +I G+C  G  +GA+     M   G   N+  +N ++
Sbjct: 256 KGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLI 315

Query: 228 DRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           D L K GK++ A ++ + M    E  D+FTY++++   C   R+  A  L +S    G+ 
Sbjct: 316 DALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIE 375

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
               +   +++G   SG   EAKK+  ++   +I
Sbjct: 376 TDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEI 409



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 64/111 (57%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+ +M++GLCK+   +NA  +F G+++ G  P LVT+N L++G C+   ++   
Sbjct: 514 LEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVV 573

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
            +L+E+ +   +P+A T + ++    ++ KY+  L +L     +G T  G+
Sbjct: 574 ELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQGQTGRGY 624


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 147/303 (48%), Gaps = 34/303 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY----------------- 48
           L P   T+NI+L  LCKN   D A ++F  +   G  P+ VTY                 
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR 234

Query: 49  -------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
                        N LI G+CK GR+  A  +L E+ D+G  PN ++Y+ I+     +  
Sbjct: 235 ELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            +L   + + M  +G   +   +  +I      G+L EA D  + M+ DG + ++V+YNT
Sbjct: 295 VELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+  C  G LE A  + D+M++ G   +  T++ILIDG  K+G++ GA      M   G
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              N+  Y C+VD L K+   D A ++ E M ++    ++ T+++ +  LC   R+  A 
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAM 474

Query: 272 KLL 274
           KLL
Sbjct: 475 KLL 477



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 5/241 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  M++ LCKN   D A  +   +   G  P  +T+N  IKGLC  GR
Sbjct: 410 MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGR 469

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ +   G  PN  TY  ++   FR  KY+    +   ++ +    +   Y T
Sbjct: 470 VEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNT 529

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-Q 179
           V+  F + G + EA     + +  G   D ++YNT+I+ YCK+GK++ A  L++ +   +
Sbjct: 530 VLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMK 589

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN----CIVDRLGKDGK 235
            +  D  T+T LI G C   NI+ A   L+     G   N   +N    C  D LG  G 
Sbjct: 590 EWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGP 649

Query: 236 I 236
           I
Sbjct: 650 I 650



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 147/311 (47%), Gaps = 9/311 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +L+ L           ++  ++K G +P + TYNIL+K LCK  R+  A  +
Sbjct: 142 PTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKL 201

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ + G  P+A+TYTT++    +  K     E+    K     ++      +I    K
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNA-----LIDGMCK 256

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR++ A   + +M+ +GV  ++VSY+ +IN  C  G +E A+ L  +M  +G + + +T
Sbjct: 257 EGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHT 316

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            T LI G    G +  A    + M + G + N+ AYN ++  L  +G ++ A+ V + M+
Sbjct: 317 FTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQ 376

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + +  TYS ++    K+  L  AS+     +  G R        +VD L  +    
Sbjct: 377 RSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFD 436

Query: 304 EAKKIQSKIRM 314
           +A  +  K+ +
Sbjct: 437 QANSLVEKMTL 447



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 148/316 (46%), Gaps = 8/316 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   +++ ++N LC +   + A  +F  +   G    + T+  LIKG    G+
Sbjct: 270 MMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGK 329

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + K +   G  PN + Y T++     N   +  L++   M+R G   +   Y  
Sbjct: 330 LYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSI 389

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K G L  A++   +M++ G + ++V+Y  ++++ CK    + A  L+++M  +G
Sbjct: 390 LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG 449

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T    I GLC  G ++ A   LE M   G   N+  YN ++D L +  K + A 
Sbjct: 450 CTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAF 509

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F+ +E +    +  TY+++++   +A  +  A +L    L  G     +      + +
Sbjct: 510 GLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT----APDSITYNTM 565

Query: 297 RHSGCRREAKKIQSKI 312
            H+ C++   KI +++
Sbjct: 566 IHAYCKQGKVKIAAQL 581



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 11/297 (3%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           C   F  ++NG  +    + AL+MF  + + G  P +  YN L+  L    + +    + 
Sbjct: 108 CEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLY 167

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
             +   G  PN  TY  ++K   +N +     ++   M  KG   D   Y T++++  K 
Sbjct: 168 TNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKA 227

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G++ +A +     +    +  +  YN LI+  CKEG++E A  LL EM   G + +  ++
Sbjct: 228 GKIDDARE-----LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSY 282

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           + +I+ LC +GN++ A      M   G D+N+  +  ++      GK+  A+++++ M +
Sbjct: 283 SCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM-I 341

Query: 249 KDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +D        Y++++H LC    L  A ++     +SG     +    ++DG   SG
Sbjct: 342 QDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 145/347 (41%), Gaps = 74/347 (21%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           + G   P    +N +++G+CK    + A+++   +  +G  P +V+Y+ +I  LC +G +
Sbjct: 236 LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRK-------YKL---------------- 98
             A  +  ++   G   N  T+T ++K CF   K       +KL                
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355

Query: 99  ------------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                        L++   M+R G   +   Y  +I  F K G L  A++   +M++ G 
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + ++V+Y  ++++ CK    + A  L+++M  +G   +  T    I GLC  G ++ A  
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------------- 249
            LE M   G   N+  YN ++D L +  K + A  +F+ +E +                 
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 250 ----------------------DSFTYSSMVHNLCKAKRLPSASKLL 274
                                 DS TY++M+H  CK  ++  A++L+
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLV 582



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ++QM  DG+      +  +IN Y + G  E A  +   + + G +     +  L+D L  
Sbjct: 97  LQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLS 156

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
               +        M K G   N+  YN ++  L K+ ++D A  +F  M  K    D+ T
Sbjct: 157 ENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVT 216

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           Y++MV +LCKA ++  A + L    K  V +      A++DG+   G
Sbjct: 217 YTTMVSSLCKAGKIDDARE-LAGRFKPSVPVY----NALIDGMCKEG 258



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 4/175 (2%)

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
           ++  Q    +Y  +I    +E +++    +L +M+  G  C +     +I+G  + G+ +
Sbjct: 67  SNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAE 126

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 258
            A      + + G    +  YN ++D L  + K      ++ +M+    + + FTY+ ++
Sbjct: 127 QALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILL 186

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             LCK  R+ +A KL +     G          +V  L  +G   +A+++  + +
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK 241



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P + T+N M++  CK      A ++  R      + P+++TY  LI G C    +  A  
Sbjct: 557 PDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMA 616

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
            L +  + G  PN  T+  +++C F +  +   + IL  + RKG
Sbjct: 617 FLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 147/303 (48%), Gaps = 34/303 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY----------------- 48
           L P   T+NI+L  LCKN   D A ++F  +   G  P+ VTY                 
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR 234

Query: 49  -------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
                        N LI G+CK GR+  A  +L E+ D+G  PN ++Y+ I+     +  
Sbjct: 235 ELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            +L   + + M  +G   +   +  +I      G+L EA D  + M+ DG + ++V+YNT
Sbjct: 295 VELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+  C  G LE A  + D+M++ G   +  T++ILIDG  K+G++ GA      M   G
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              N+  Y C+VD L K+   D A ++ E M ++    ++ T+++ +  LC   R+  A 
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAM 474

Query: 272 KLL 274
           KLL
Sbjct: 475 KLL 477



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 147/311 (47%), Gaps = 9/311 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +L+ L           ++  ++K G +P + TYNIL+K LCK  R+  A  +
Sbjct: 142 PTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKL 201

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ + G  P+A+TYTT++    +  K     E+    K     ++      +I    K
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNA-----LIDGMCK 256

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR++ A   + +M+ +GV  ++VSY+ +IN  C  G +E A+ L  +M  +G + + +T
Sbjct: 257 EGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHT 316

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            T LI G    G +  A    + M + G + N+ AYN ++  L  +G ++ A+ V + M+
Sbjct: 317 FTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQ 376

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + +  TYS ++    K+  L  AS+     +  G R        +VD L  +    
Sbjct: 377 RSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFD 436

Query: 304 EAKKIQSKIRM 314
           +A  +  K+ +
Sbjct: 437 QANSLVEKMTL 447



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 5/241 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  M++ LCKN   D A  +   +   G  P  +T+N  IKGLC  GR
Sbjct: 410 MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGR 469

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ +   G  PN  TY  ++   FR  KY+    +   ++ +    +   Y T
Sbjct: 470 VEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNT 529

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-Q 179
           V+  F + G + EA     + +  G   D ++YNT+I+ YCK+GK++ A  L++ +   +
Sbjct: 530 VLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMK 589

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN----CIVDRLGKDGK 235
            +  D  T+T LI G C   NI+ A   L+     G   N   +N    C  D LG  G 
Sbjct: 590 EWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGP 649

Query: 236 I 236
           I
Sbjct: 650 I 650



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 148/316 (46%), Gaps = 8/316 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   +++ ++N LC +   + A  +F  +   G    + T+  LIKG    G+
Sbjct: 270 MMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGK 329

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + K +   G  PN + Y T++     N   +  L++   M+R G   +   Y  
Sbjct: 330 LYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSI 389

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K G L  A++   +M++ G + ++V+Y  ++++ CK    + A  L+++M  +G
Sbjct: 390 LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG 449

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T    I GLC  G ++ A   LE M   G   N+  YN ++D L +  K + A 
Sbjct: 450 CTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAF 509

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F+ +E +    +  TY+++++   +A  +  A +L    L  G     +      + +
Sbjct: 510 GLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT----APDSITYNTM 565

Query: 297 RHSGCRREAKKIQSKI 312
            H+ C++   KI +++
Sbjct: 566 IHAYCKQGKVKIAAQL 581



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 11/297 (3%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           C   F  ++NG  +    + AL+MF  + + G  P +  YN L+  L    + +    + 
Sbjct: 108 CEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLY 167

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
             +   G  PN  TY  ++K   +N +     ++   M  KG   D   Y T++++  K 
Sbjct: 168 TNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKA 227

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G++ +A +     +    +  +  YN LI+  CKEG++E A  LL EM   G + +  ++
Sbjct: 228 GKIDDARE-----LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSY 282

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           + +I+ LC +GN++ A      M   G D+N+  +  ++      GK+  A+++++ M +
Sbjct: 283 SCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM-I 341

Query: 249 KDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +D        Y++++H LC    L  A ++     +SG     +    ++DG   SG
Sbjct: 342 QDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 145/347 (41%), Gaps = 74/347 (21%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           + G   P    +N +++G+CK    + A+++   +  +G  P +V+Y+ +I  LC +G +
Sbjct: 236 LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRK-------YKL---------------- 98
             A  +  ++   G   N  T+T ++K CF   K       +KL                
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355

Query: 99  ------------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                        L++   M+R G   +   Y  +I  F K G L  A++   +M++ G 
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + ++V+Y  ++++ CK    + A  L+++M  +G   +  T    I GLC  G ++ A  
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------------- 249
            LE M   G   N+  YN ++D L +  K + A  +F+ +E +                 
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 250 ----------------------DSFTYSSMVHNLCKAKRLPSASKLL 274
                                 DS TY++M+H  CK  ++  A++L+
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLV 582



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ++QM  DG+      +  +IN Y + G  E A  +   + + G +     +  L+D L  
Sbjct: 97  LQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLS 156

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
               +        M K G   N+  YN ++  L K+ ++D A  +F  M  K    D+ T
Sbjct: 157 ENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVT 216

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           Y++MV +LCKA ++  A + L    K  V +      A++DG+   G
Sbjct: 217 YTTMVSSLCKAGKIDDARE-LAGRFKPSVPVY----NALIDGMCKEG 258



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 4/175 (2%)

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
           ++  Q    +Y  +I    +E +++    +L +M+  G  C +     +I+G  + G+ +
Sbjct: 67  SNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAE 126

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 258
            A      + + G    +  YN ++D L  + K      ++ +M+    + + FTY+ ++
Sbjct: 127 QALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILL 186

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             LCK  R+ +A KL +     G          +V  L  +G   +A+++  + +
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK 241



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P + T+N M++  CK      A ++  R      + P+++TY  LI G C    +  A  
Sbjct: 557 PDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMA 616

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
            L +  + G  PN  T+  +++C F +  +   + IL  + RKG
Sbjct: 617 FLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 153/309 (49%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++    K    DNA    R +++ GF P+ VT+N LI G CKAGRL  A  +
Sbjct: 385 PNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRM 444

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G   N++T  TI+      RK     ++LS+  ++GY  D   Y T+I  + K
Sbjct: 445 MDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFK 504

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  EA    ++M    +   I++YNT+I   C  GK + +   L+E+ + G   D+ T
Sbjct: 505 DGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETT 564

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I G C+ G ++ A      M K  F  +L   N ++  L  +G +D A+ +F +  
Sbjct: 565 YNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWI 624

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D+ TY++++  LCK  R   A  LL    +  +        A++  L  +G  +
Sbjct: 625 SKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMK 684

Query: 304 EAKKIQSKI 312
           EA++  S+I
Sbjct: 685 EAEEFMSRI 693



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 161/311 (51%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFNI+++G CK  +   A ++   + ++  +P++ TYN+LI GLCK G++  A 
Sbjct: 278 LLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAF 337

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ +    P+ +TY T++  CF       G E++  M+ KG   +   Y  V+  +
Sbjct: 338 RLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWY 397

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK G++  A + + +M   G   D V++NTLIN YCK G+L  A+ ++DEM ++G + + 
Sbjct: 398 VKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNS 457

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   ++  LC    +  A   L   +K G+  +  +Y  ++    KDGK   A+ +++ 
Sbjct: 458 VTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDE 517

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ K+      TY++M+  LC + +   +   L   L+SG+   ++    ++ G    G 
Sbjct: 518 MKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQ 577

Query: 302 RREAKKIQSKI 312
             +A +  +K+
Sbjct: 578 VEKAFQFHNKM 588



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 137/274 (50%), Gaps = 4/274 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   ++ P   T+N+++ GLCK+   D A R+   ++    +P++VTYN LI G      
Sbjct: 308 MAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSS 367

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ ++   G  PNA+TY  ++K   +  K       L  M+  G++ D   + T
Sbjct: 368 SLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNT 427

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K GRL EA   M++M   G++++ V+ NT+++  C E KL+ AY LL    K+G
Sbjct: 428 LINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRG 487

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  D+ ++  LI G  K G    A    + M +     ++  YN ++  L   GK D +I
Sbjct: 488 YFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSI 547

Query: 241 N----VFESMEVKDSFTYSSMVHNLCKAKRLPSA 270
           +    + ES  V D  TY++++   C+  ++  A
Sbjct: 548 DKLNELLESGLVPDETTYNTIILGYCREGQVEKA 581



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 140/281 (49%), Gaps = 6/281 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   TFN ++NG CK      A RM   + + G     VT N ++  LC   +L  A 
Sbjct: 418 FSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAY 477

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L      G+  + ++Y T++   F++ K    +++   MK K        Y T+I   
Sbjct: 478 KLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGL 537

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+  ++ D + +++  G+  D  +YNT+I  YC+EG++E A+   ++M K+ F+ D 
Sbjct: 538 CHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDL 597

Query: 186 YTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +T  IL+ GLC  G + K  +L   +++K G   +   YN I+  L K+ + + A ++  
Sbjct: 598 FTCNILLRGLCTEGMLDKALKLFNTWISK-GKAIDAVTYNTIISGLCKEDRFEEAFDLLA 656

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            ME K    D +TY++++  L  A R+  A + +   ++ G
Sbjct: 657 EMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQG 697



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 143/289 (49%), Gaps = 13/289 (4%)

Query: 6   LTPCTATFNIMLNGLCK-----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           L P   T N ++N L +     + Y   A+  F  + K G      T+NILI G C   +
Sbjct: 170 LKPNLLTCNTLINALVRYPSKPSVYLSKAI--FSDVIKLGVKVNTNTFNILIYGCCIENK 227

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++ ++ D    P+ ++Y TI+    +  K     ++L  MK  G   +   +  
Sbjct: 228 LSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNI 287

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ + K+G LKEA   ++ M  + V  D+ +YN LI   CK+GK++ A+ L DEME   
Sbjct: 288 LVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLK 347

Query: 181 FECDKYTHTILIDGLCK-AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D  T+  LI+G    + ++KG  L ++ M   G   N   YN +V    K+GK+D+A
Sbjct: 348 LLPDVVTYNTLINGCFDCSSSLKGFEL-IDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNA 406

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            N    ME      D  T++++++  CKA RL  A +++    + G+++
Sbjct: 407 GNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKM 455



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 143/286 (50%), Gaps = 8/286 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++ G  K+  +  A++++  +++   +P ++TYN +I GLC +G+   +   L E
Sbjct: 493 VSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNE 552

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           L +SG  P+  TY TI+    R  + +   +  + M +K +  D F    ++      G 
Sbjct: 553 LLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGM 612

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L +A       ++ G  +D V+YNT+I+  CKE + E A+ LL EME++    D YT+  
Sbjct: 613 LDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNA 672

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           ++  L  AG +K A    E+M++I     L+     +++     KI+ +    +  +  +
Sbjct: 673 ILSALADAGRMKEAE---EFMSRIVEQGKLQDQTISLNK----RKIESSSETSQESD-PN 724

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           S T+S  ++ LC   +   A  ++    + G+ + KS   ++++GL
Sbjct: 725 SVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGL 770



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 23/215 (10%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++ G C+    + A +    + K  F P+L T NIL++GLC  G L  A 
Sbjct: 558 LVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKAL 617

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +       G A +A+TY TI+    +  +++   ++L+ M+ K    D + Y  +++A 
Sbjct: 618 KLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSAL 677

Query: 126 VKIGRLKEATDYMEQMVTDGVQLD-----------------------IVSYNTLINLYCK 162
              GR+KEA ++M ++V  G   D                        V+++  IN  C 
Sbjct: 678 ADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCT 737

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           +GK + A  ++ E  ++G    K T+  L++GL K
Sbjct: 738 QGKYKDAMHMVQESTQKGITLHKSTYISLMEGLIK 772



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 34/192 (17%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL---LLDEM 176
           T I A+V   R   A     +M    ++ ++++ NTLIN   +     + YL   +  ++
Sbjct: 144 TSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDV 203

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            K G + +  T  ILI G C    +  A         IG    ++ ++C           
Sbjct: 204 IKLGVKVNTNTFNILIYGCCIENKLSEA---------IGLIGKMKDFSCF---------- 244

Query: 237 DHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                        D+ +Y++++  LCK  +L  A  LLL    +G+   ++    +V G 
Sbjct: 245 ------------PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGY 292

Query: 297 RHSGCRREAKKI 308
              G  +EA ++
Sbjct: 293 CKLGWLKEAAQV 304


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 153/322 (47%), Gaps = 4/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N M++G  K    +   R+   +   G  P +VTYN+L+ GLC+AGR
Sbjct: 42  MVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGR 101

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   R ++ E+      P+  TY+ +     R  + +  L + +   +KG     +    
Sbjct: 102 MDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSI 161

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G++ +A   +E +V  G+    V YNTLIN YC+   L  A+ + ++M+ + 
Sbjct: 162 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 221

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI+GLCK   +  A   +  M K G D ++E +N ++D  G  G+++   
Sbjct: 222 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 281

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   M+ K    D  ++ S+V   CK  ++P A  +L   +   V        +++D  
Sbjct: 282 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 341

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
             SG   +A  +  K++ + +S
Sbjct: 342 IESGDTEQAFLLVEKMKNSGVS 363



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 120/252 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGLCK      A  +   ++K G  P + T+N LI     AG+L    
Sbjct: 222 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 281

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G   + I++ +++K   +N K    + IL  M  K    +   Y ++I A+
Sbjct: 282 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 341

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++ G  ++A   +E+M   GV   IV+YN L+   C+  +++ A  L+  +  QG   D 
Sbjct: 342 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 401

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  +I   C  G+   A   L+ MNK G    L  Y+ +V  L   G++     +++ 
Sbjct: 402 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 461

Query: 246 MEVKDSFTYSSM 257
           M  K+    SS+
Sbjct: 462 MLHKNVEPSSSI 473



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 4/262 (1%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P+  +YN++I GL ++G+   A  +  E+ D G  PN ITY T++    +    + G  +
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
              M   G   +   Y  +++   + GR+ E    M++M +  +  D  +Y+ L +   +
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
            G+      L  E  K+G     YT +IL++GLCK G +  A   LE +   G       
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN +++   +   +  A  +FE M+ +    D  TY+++++ LCK + +  A  L++   
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 279 KSGVRILKSAQKAVVDGLRHSG 300
           KSGV         ++D    +G
Sbjct: 254 KSGVDPSVETFNTLIDAYGTAG 275



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 3/234 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN +++        +    +   +Q+ G   +++++  ++K  CK G++  A 
Sbjct: 257 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAV 316

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL ++     APNA  Y +I+     +   +    ++  MK  G +     Y  ++   
Sbjct: 317 AILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGL 376

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  ++ EA + +  +   G++ D+VSYNT+I+  C +G  + A  LL EM K G     
Sbjct: 377 CRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTL 436

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKI 236
            T+  L+  L  AG +       + M     + +   Y  +VD   R   D K+
Sbjct: 437 RTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKV 490



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D+ P    +N +++   ++  T+ A  +   ++  G    +VTYN+L+KGLC++ +
Sbjct: 322 MIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 381

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++  L + G  P+ ++Y TI+  C         LE+L  M + G       Y T
Sbjct: 382 IDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHT 441

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++A    GR+ +     +QM+   V+     Y  +++ Y +         L  EM ++G
Sbjct: 442 LVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 501

Query: 181 FECD 184
              D
Sbjct: 502 IAFD 505


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 147/315 (46%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M++G  K    +    +   +  HG  P  +TYN+L+ GLC+AGR+     +
Sbjct: 229 PNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSAL 288

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+  TY+ +     RN   K  L +     + G T   +    ++    K
Sbjct: 289 LDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCK 348

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A + ++ +V  G+    V YNTLIN YC+ G+LE A+    +M+ +  + D  T
Sbjct: 349 DGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHIT 408

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+GLCKA  I  A+  L  M   G +  +E +N ++D  G+ G+++    V   M+
Sbjct: 409 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 468

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 +  +Y S+V+  CK  ++P A  +L       V        A++D     G   
Sbjct: 469 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 528

Query: 304 EAKKIQSKIRMAKIS 318
           +A  +  K++   IS
Sbjct: 529 QAFILVEKMKSNGIS 543



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 4/323 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++   L P    +N ++NG C+    + A   F  ++     P+ +TYN LI GLCKA R
Sbjct: 362 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 421

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L E+ D+G  P   T+ T++    R  + +    +LS M+  G   +   Y +
Sbjct: 422 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 481

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K G++ EA   ++ M    V  +   YN +I+ Y + G  + A++L+++M+  G
Sbjct: 482 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 541

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ +LI GLC    I  A   +  ++      +  +YN ++      G ID A+
Sbjct: 542 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 601

Query: 241 NVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + M    +K +  TY  ++  L  A RL     L    +++ V    +    +V+  
Sbjct: 602 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAY 661

Query: 297 RHSGCRREAKKIQSKIRMAKISH 319
              G   +A+ ++ ++   + +H
Sbjct: 662 SKYGNEIKAEDLRKEMLQKRNNH 684



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 136/280 (48%), Gaps = 4/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T++I+ +GL +N  +   L +F    K+G      T +IL+ GLCK G+
Sbjct: 292 MASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGK 351

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ L ++G  P  + Y T++    +  + +        MK +    D   Y  
Sbjct: 352 VSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 411

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R+  A D + +M  +GV   + ++NTLI+ Y + G+LE  +++L EM++ G
Sbjct: 412 LINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENG 471

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  ++  +++  CK G I  A   L+ M       N + YN I+D   + G  D A 
Sbjct: 472 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 531

Query: 241 NVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLS 276
            + E M+   +  S  TY+ ++  LC   ++  A +++ S
Sbjct: 532 ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINS 571



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 136/293 (46%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T +I+LNGLCK+     A  + + L   G VP  V YN LI G C+ G L  A     ++
Sbjct: 338 TCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM 397

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P+ ITY  ++    +  +     ++L  M+  G       + T+I A+ + G+L
Sbjct: 398 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 457

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++    + +M  +G++ ++VSY +++N +CK GK+  A  +LD+M  +    +   +  +
Sbjct: 458 EKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAI 517

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           ID   + G    A + +E M   G   ++  YN ++  L    +I  A  +  S+     
Sbjct: 518 IDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRL 577

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           + D+ +Y++++   C    +  A  L     K G++        ++ GL  +G
Sbjct: 578 IPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAG 630



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 132/277 (47%), Gaps = 5/277 (1%)

Query: 29  ALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           A+ M R + + G  P    +YN++I G+ +AGR   A  +  E+ +    PN ITY T++
Sbjct: 179 AVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMI 238

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
               +    + G  +   M   G   +   Y  +++   + GR+ E +  +++M +  + 
Sbjct: 239 DGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 298

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D  +Y+ L +   + G  +A   L  +  K G     YT +IL++GLCK G +  A   
Sbjct: 299 PDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 358

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
           L+ +   G       YN +++   + G+++ A + F  M+ +    D  TY+++++ LCK
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 418

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           A+R+ +A  LL+    +GV         ++D    +G
Sbjct: 419 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTG 455


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 153/316 (48%), Gaps = 13/316 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDN-ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   ++N +L+ + + + +   A  +F+ + + G  P + TYNILI+G C AG L    +
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLF 224

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              E+  +G  PN +TY TI+    + RK     ++L  M  KG   +   Y  VI    
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G++KE ++ +E+M       D V++NTLIN YC  G    A +L  EM K G   +  
Sbjct: 285 REGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVV 344

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LI+ +CKAGN+  A   L+ M   G   N   Y  ++D   + G +  A  + + M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 247 EVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            V++ F     TY+++++  C   R+  AS LL   ++ G      +   ++ G     C
Sbjct: 405 -VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGF----C 459

Query: 302 RRE--AKKIQSKIRMA 315
           R +   K  Q K+ M 
Sbjct: 460 RNQELEKAFQLKVEMV 475



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+NI++ G C     +  L  F  ++++G +P +VTYN +I   CK  +
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ +   G  PN I+Y  ++    R  + K   EIL  M ++ Y  D   + T
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNT 313

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +  +G   +A     +MV +G+  ++V+Y TLIN  CK G L  A   LD+M  +G
Sbjct: 314 LINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRG 373

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T LIDG  + G +K A   ++ M + GF   +  YN +++     G+++ A 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + M     + D  +YS+++   C+ + L  A +L +  +  G+    +   +++ GL
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 152/325 (46%), Gaps = 25/325 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G  +  +   A ++ + + ++GF P ++TYN LI G C  GR+  A 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ + G  P+ ++Y+TI+    RN++ +   ++   M  KG + D   Y ++I   
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL E  D  ++M++ G+  D V+Y +LIN YC EG L+ A  L DEM ++GF  D 
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDI 553

Query: 186 YTHTILIDGLCKAGNIKGAR---LHLEYMNKIGFDSNLEAYNCIVDRLGK---------- 232
            T+ +LI+G  K    K A+   L L Y   +    N   YN ++D              
Sbjct: 554 VTYNVLINGFNKQSRTKEAKRLLLKLLYEESV---PNEITYNTLIDNCNNLEFKSALALM 610

Query: 233 -----DGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                 G ++ A  V ESM  K    +   Y+ ++H   K   +  A  L    L SG  
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKI 308
                  A+   L H G   E  ++
Sbjct: 671 PHSVTIMALAKSLYHEGKEVELNQL 695



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 4/276 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFN ++NG C       AL +   + K+G  P +VTY  LI  +CKAG L  A  
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAME 364

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L ++ D G  PN  TYTT++    +    K   +I+  M   G+T     Y  +I    
Sbjct: 365 FLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHC 424

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            +GR+++A+  +++M+  G   D+VSY+T+I+ +C+  +LE A+ L  EM  +G   D  
Sbjct: 425 ILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVA 484

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LI GLCK   +       + M  +G   +   Y  +++    +G +D A+ + + M
Sbjct: 485 TYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
             K    D  TY+ +++   K  R   A +LLL  L
Sbjct: 545 IQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 20/315 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   T+N ++NG C     ++A  + + + + GF+P++V+Y+ +I G C+   
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE 463

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  E+   G +P+  TY+++++   + R+     ++   M   G   D   Y +
Sbjct: 464 LEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+   G L +A    ++M+  G   DIV+YN LIN + K+ + + A  LL ++  + 
Sbjct: 524 LINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE 583

Query: 181 FECDKYTHTILID---------------GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
              ++ T+  LID               G C  G +  A   LE M + G+  N E YN 
Sbjct: 584 SVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNV 643

Query: 226 IVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           I+    K G I+ A N+++ M        S T  ++  +L    +    ++LL   LKS 
Sbjct: 644 IIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKS- 702

Query: 282 VRILKSAQKAVVDGL 296
            RI ++A   V+ G+
Sbjct: 703 CRITEAALAKVLIGI 717



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 117/260 (45%), Gaps = 28/260 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  ++N  C     D ALR+   + + GF P++VTYN+LI G  K  R
Sbjct: 509 MLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSR 568

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ +L +L      PN ITY T++  C  N ++K  L ++             G+C 
Sbjct: 569 TKEAKRLLLKLLYEESVPNEITYNTLIDNC-NNLEFKSALALMK------------GFCM 615

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                   G + EA   +E M+  G +L+   YN +I+ + K G +E AY L  EM   G
Sbjct: 616 K-------GLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHL----EYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           F      H++ I  L K+   +G  + L    +Y  K    +       ++    K+G +
Sbjct: 669 FA----PHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNM 724

Query: 237 DHAINVFESMEVKDSFTYSS 256
           D   NV + M +     YSS
Sbjct: 725 DAVFNVLKDMALSGLLPYSS 744


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 162/356 (45%), Gaps = 39/356 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI++  LC   +   AL + R ++  G  P +VTYN L+    +AG 
Sbjct: 141 MLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 200

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++  + D G  PN +T+ +++    +  K +   ++   M R+G   DG  Y T
Sbjct: 201 VDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNT 260

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K G   EA     +M   G+  D+V++ +LI++ CK G LE A  L+ +M ++G
Sbjct: 261 LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERG 320

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + ++ T T LIDG CK G +  A L +  M +     ++  YN +++     G++D A 
Sbjct: 321 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEAR 380

Query: 241 NVFESMEVK---------------------------------------DSFTYSSMVHNL 261
            +   ME K                                       D+ TYSS++  L
Sbjct: 381 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 440

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           C+ KRL  A  L  + +K G++  +    +++DG    G    A  +  K+  A +
Sbjct: 441 CEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGV 496



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 157/316 (49%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G L P   TFN M+NG+CK    ++A ++F  + + G  P+ V+YN L+ G CKAG 
Sbjct: 211 MLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGC 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  E+   G  P+ +T+T+++    +    +  + ++  M+ +G   +   +  
Sbjct: 271 SHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTA 330

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K G L +A   +  M    ++  +V YN LIN YC  G+++ A  LL EME +G
Sbjct: 331 LIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG 390

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T++ +I   CK  +   A    + M + G   +   Y+ ++  L ++ ++  A 
Sbjct: 391 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAH 450

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F++M       D FTY+S++   CK   +  A  L    +K+GV         +++GL
Sbjct: 451 VLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGL 510

Query: 297 RHSGCRREAKKIQSKI 312
             S    EA+++  K+
Sbjct: 511 SKSARAMEAQQLLFKL 526



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 155/320 (48%), Gaps = 19/320 (5%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF  +++G CK  + D+AL   RG+++    P +V YN LI G C  GR+  AR +L E+
Sbjct: 327 TFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM 386

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ +TY+TI+    +N       E+   M  KG   D   Y ++I    +  RL
Sbjct: 387 EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRL 446

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A    + M+  G+Q D  +Y +LI+ +CKEG +E A  L D+M K G   D  T+++L
Sbjct: 447 SDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVL 506

Query: 192 IDGLCKAGN-IKGARLHLEYMNKIGFDSN--------------LEAYNCIVDRLGKDGKI 236
           I+GL K+   ++  +L  +  ++    +N              L++   ++      G +
Sbjct: 507 INGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLM 566

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           + A  V++SM  +    D   YS ++H  C+A  +  A       L+ G     ++  ++
Sbjct: 567 NEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISL 626

Query: 293 VDGLRHSGCRREAKKIQSKI 312
           + GL  +G   EA ++  ++
Sbjct: 627 IRGLFENGMVVEADQVIQQL 646



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 7/229 (3%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYKL 98
           G+VP ++ YN ++  L  A  L +AR     +   G APN  TY  +++  C R  + K 
Sbjct: 111 GYVPSVLAYNAVLLALSDAS-LTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHR-KE 168

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            L IL  M+  G   +   Y T++AAF + G +  A   +  M+  G++ ++V++N+++N
Sbjct: 169 ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVN 228

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
             CK GK+E A  + DEM ++G   D  ++  L+ G CKAG    A      M + G   
Sbjct: 229 GMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMP 288

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
           ++  +  ++  + K G ++ A+ +   M  +    +  T+++++   CK
Sbjct: 289 DVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCK 337



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 21/256 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+  +++G CK    + AL +   + K G +P++VTY++LI GL K+ R
Sbjct: 456 MIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 515

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +L +L      P    Y  +M CC   RK +L   +L+ +K         G+C 
Sbjct: 516 AMEAQQLLFKLYHEEPIPANTKYDALMHCC---RKAELK-SVLALLK---------GFCM 562

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                   G + EA    + M+     LD   Y+ LI+ +C+ G +  A     +M ++G
Sbjct: 563 K-------GLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRG 615

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  +  +   LI GL + G +  A   ++ +      ++ EA   ++D    +G +D  +
Sbjct: 616 FAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVL 675

Query: 241 NVFESMEVKDSFTYSS 256
           +V   M  KD    S 
Sbjct: 676 DVLHGM-AKDGLLPSP 690


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 150/310 (48%), Gaps = 4/310 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +L+GLC       A+ +F G+Q  G  P+   Y  ++ GLC AGR R A  +L + 
Sbjct: 144 TYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDA 203

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN + Y  ++         +L +++   M   G + +   Y  +I+ F K  +L
Sbjct: 204 MAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKL 263

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A     +MV  G+  ++V+Y  LI   C +G+L+ AY LL  ME  G   +++T ++L
Sbjct: 264 DRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVL 323

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           ID LCK   +  A+L L  + + G   N   Y  ++D L K G+   A  + +++     
Sbjct: 324 IDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGF 383

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V D+ TYSS++  LC+ K L  A  +L   ++ GV+        ++D L        +KK
Sbjct: 384 VPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKK 443

Query: 308 IQSKIRMAKI 317
           I  K+  A I
Sbjct: 444 ILDKMIAAGI 453



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G C     + A+ +F  +  +G  P + TY  LI G CK+ +L  A  +
Sbjct: 210 PNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMML 269

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + D+G  PN +TYT +++    + +      +L +M+  G   + +    +I A  K
Sbjct: 270 FSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCK 329

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA   +  ++  G++++ + Y +LI+  CK G+  AA  L+  +  QGF  D +T
Sbjct: 330 HERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHT 389

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLC+   +  A L L+ M + G   +   Y  I+D L ++   D +  + + M 
Sbjct: 390 YSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMI 449

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 D FTY+  V + C   R+  A  ++L  +  GV
Sbjct: 450 AAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGV 488



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 136/293 (46%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++N  C       + R    L + GF P+   Y   + G C+AG L  A  +   +
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G    A TYT ++         +  + + + M+  G   D   Y T++      GR 
Sbjct: 134 PLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRT 193

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA   +   + +G + ++V YN LI+ YC  G LE A  + + M+  G   +  T+T L
Sbjct: 194 REAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTEL 253

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I G CK+  +  A +    M   G   N+  Y  ++     DG++D A  + +SME    
Sbjct: 254 ISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGL 313

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           V + +T S ++  LCK +R+  A  LL S ++ G+++ +    +++DGL  +G
Sbjct: 314 VPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAG 366



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 122/233 (52%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+  +++G CK+R  D A+ +F  +   G VP +VTY  LI+G C  G+L  A  
Sbjct: 244 SPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYR 303

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ + +SG  PN  T + ++    ++ +      +L ++ +KG   +   Y ++I    
Sbjct: 304 LLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLC 363

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR   A   M+ +V+ G   D  +Y++LI+  C++ +L  A L+LD+M ++G +    
Sbjct: 364 KAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPV 423

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           T+TI+ID L +     G++  L+ M   G   ++  Y   V     +G+++ A
Sbjct: 424 TYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDA 476



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 144/317 (45%), Gaps = 20/317 (6%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +  +++GLCK      A R+ + L   GFVP+  TY+ LI GLC+   L  A  +L ++
Sbjct: 354 VYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDM 413

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+ +TYT I+    R        +IL  M   G   D F Y   + ++   GR+
Sbjct: 414 MEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRM 473

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A   M  MV  GV  ++V+YN LI  Y   G    A+     M   G + ++ ++T+L
Sbjct: 474 EDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVL 533

Query: 192 IDGLCK---AGNIKGAR-----------LH--LEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           +  L K   + NI               LH  LE M K+   S ++ YNC +  L +  +
Sbjct: 534 LRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDR 593

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           +D A  +   M+          Y+S++   C+ K L  A   + S +KSG      + + 
Sbjct: 594 LDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRH 653

Query: 292 VVDGLRHSGCRREAKKI 308
           ++  L   G  + AK++
Sbjct: 654 IISSLCEEGSIQTAKQV 670



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 114/246 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  ++ G C +   D A R+ + ++  G VP   T ++LI  LCK  R
Sbjct: 273 MVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHER 332

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L  L   G   N I YT+++    +  ++     ++  +  +G+  D   Y +
Sbjct: 333 VGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSS 392

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    +   L EA   ++ M+  GVQ   V+Y  +I+   +E   + +  +LD+M   G
Sbjct: 393 LIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAG 452

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D +T+TI +   C  G ++ A   + +M   G   NL  YN ++      G    A 
Sbjct: 453 IKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAF 512

Query: 241 NVFESM 246
           + F+ M
Sbjct: 513 STFKHM 518



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 19/250 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+ I +   C     ++A  M   +  HG  P LVTYN LI G    G 
Sbjct: 448 MIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGL 507

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A    K +  +G  PN  +YT +++   +                   + +     +
Sbjct: 508 TSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKE-----------------SSNNIPANS 550

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V  +  KI  +K     +E+MV   +  +I  YN  +   C+  +L+ A +LL EM+   
Sbjct: 551 V--SIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSAN 608

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               +  +T +I   C+   +  A   ++ M K G+   LE+Y  I+  L ++G I  A 
Sbjct: 609 LTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAK 668

Query: 241 NVFESMEVKD 250
            VF  M  K+
Sbjct: 669 QVFGDMLSKE 678



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 4/162 (2%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ME   +     ++ +Y TLIN YC  G L A+   L  + + GF  D + +T  + G C+
Sbjct: 60  MESFASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCR 119

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
           AG +  A      M   G       Y  ++  L   G +  A++VF  M+      D   
Sbjct: 120 AGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHV 179

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           Y++MVH LC A R   A  LL   +  G         A++DG
Sbjct: 180 YATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDG 221



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 16/218 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQK---HGFVPELV------- 46
           M+     P   ++ ++L  L K    N    N++ +++  +    HG + E+V       
Sbjct: 518 MVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSE 577

Query: 47  --TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
              YN  +  LC+  RL  A+ +L E+  +   P+   YT+I+ CC R +     L  + 
Sbjct: 578 IDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVD 637

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           +M + GY      Y  +I++  + G ++ A      M++     + +++  LI+   ++G
Sbjct: 638 SMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKG 697

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
            +     LL  ME++ +      +  L   +  A +I+
Sbjct: 698 YVAECSSLLSVMEEKNYRPSDALYARLTGKITDANDIQ 735



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LI+  C AG++  ++ HL  + + GF  +  AY   V    + G + HA  +F  M
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                V+ +FTY++++H LC A  +  A  +       G          +V GL  +G  
Sbjct: 134 PLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRT 193

Query: 303 REAKKIQS 310
           REA+ + S
Sbjct: 194 REAETLLS 201


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 4/294 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T TF  +  GLC       A      +   GF  + ++Y  LI GLCK G  R A  
Sbjct: 152 VPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALD 211

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ +  +   PN + Y TI+    + +      ++ S M  KG + D   Y  +I+ F 
Sbjct: 212 LLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFC 271

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            +G+LK+A D   +M+ + ++ D+ ++N L+N +CK+GK++    + D M KQG + +  
Sbjct: 272 ILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFV 331

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  L+DG C    +  A+     M + G + ++++Y+ +++   K  K D A+N+F+ M
Sbjct: 332 TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM 391

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                + D  TYSS++  L K+ R+  A +L+      GV        +++D L
Sbjct: 392 HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDAL 445



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 144/288 (50%), Gaps = 4/288 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TFNI++N  CK+        +F  + K G  P  VTYN L+ G C    
Sbjct: 286 MILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ I   +   G  P+  +Y+ ++    + +K+   + +   M RK    D   Y +
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+  A   ++QM   GV  +I +YN++++  CK  +++ A  LL + + +G
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKG 465

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F+ D  T++ILI GLC++G ++ AR   E +   G++ ++ AY  ++     +G  + A+
Sbjct: 466 FQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEAL 525

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +   ME    + D+ TY  ++ +L K      A KLL   +  G+ +
Sbjct: 526 ALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPL 573



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 149/312 (47%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++ +CK +  + A  +F  +   G  P++VTY+ LI G C  G+L+ A 
Sbjct: 221 VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAI 280

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+  T+  ++    ++ K K G  +   M ++G   +   Y +++  +
Sbjct: 281 DLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +  + +A      M   GV  DI SY+ +IN +CK  K + A  L  EM ++    D 
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV 400

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LIDGL K+G I  A   ++ M+  G   N+  YN I+D L K  ++D AI +   
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTK 460

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            + K    D  TYS ++  LC++ +L  A K+    L  G  +   A   ++ G    G 
Sbjct: 461 FKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGL 520

Query: 302 RREAKKIQSKIR 313
             EA  + SK+ 
Sbjct: 521 FNEALALLSKME 532



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 133/278 (47%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ +++G C      +A+ +F  +      P++ T+NIL+   CK G+
Sbjct: 251 MVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGK 310

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++  + +   +   G  PN +TY ++M      ++      I + M + G   D   Y  
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F KI +  EA +  ++M    +  D+V+Y++LI+   K G++  A  L+D+M  +G
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  ++D LCK   +  A   L      GF  ++  Y+ ++  L + GK++ A 
Sbjct: 431 VPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDAR 490

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            VFE + VK    D + Y+ M+   C       A  LL
Sbjct: 491 KVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALL 528



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 145/297 (48%), Gaps = 10/297 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    FN +L  L K+++    L + + ++  G  P LV  NILI   C+ G +  A  
Sbjct: 82  TPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFS 141

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  ++   G+ P+ IT+TT+ K      + +        +   G+ FD   Y T+I    
Sbjct: 142 VFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC 201

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G  + A D ++++  + VQ ++V YNT+I+  CK   +  A+ L  EM  +G   D  
Sbjct: 202 KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVV 261

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVF 243
           T++ LI G C  G +K A   ++  NK+  ++   ++  +N +V+   KDGK+     VF
Sbjct: 262 TYSALISGFCILGKLKDA---IDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF 318

Query: 244 ESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + M    +K +F TY+S++   C  K +  A  +  +  + GV     +   +++G 
Sbjct: 319 DMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T++ +++GL K+     AL++   +   G  P + TYN ++  LCK  ++  A
Sbjct: 395 NIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKA 454

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L +  D G  P+  TY+ ++K   ++ K +   ++   +  KGY  D + Y  +I  
Sbjct: 455 IALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQG 514

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   G   EA   + +M  +G   D  +Y  +I    K+ + + A  LL EM  +G   +
Sbjct: 515 FCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574

Query: 185 KY 186
            Y
Sbjct: 575 FY 576



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 112/243 (46%), Gaps = 4/243 (1%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N I+Y++       N      + + + + R+  T   F +  ++ + VK           
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           ++M   G++ ++V+ N LIN +C+ G +  A+ +  ++ K G+  D  T T L  GLC  
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLK 168

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTY 254
           G I+ A L  + +  +GF  +  +Y  ++  L K G+   A+++ + ++      +   Y
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMY 228

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           ++++ ++CK K +  A  L    +  G+        A++ G    G  ++A  + +K+ +
Sbjct: 229 NTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMIL 288

Query: 315 AKI 317
             I
Sbjct: 289 ENI 291


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 160/305 (52%), Gaps = 9/305 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN +L+ LCK+   + A  + R L K  F P+ V+YNIL  G C   R   A  +LKE+
Sbjct: 173 SFNTLLDILCKSNRVETAHDLLRTL-KSRFRPDTVSYNILANGYCLKKRTPMALRVLKEM 231

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P  +TY T++K  FR+ + K   E    MK++    D   Y TVI  F + G +
Sbjct: 232 VQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEV 291

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTI 190
           K+A    ++MV +GV  ++ +YN LI ++CK+  ++ A  + +EM ++G    +  T  +
Sbjct: 292 KKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNV 351

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +I GLC  G+++ A   +E M + G  ++++ YN ++      G+I+  + VF  M    
Sbjct: 352 VIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGL 411

Query: 248 -VKDSFTYSSMVHNLC---KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            + +  TY+ ++  +    K++ L  A KLL+  ++ G    K     V++GL  +G + 
Sbjct: 412 CLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQD 471

Query: 304 EAKKI 308
            AK I
Sbjct: 472 FAKDI 476



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 112/282 (39%), Gaps = 74/282 (26%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG------------- 54
           P T ++NI+ NG C  + T  ALR+ + + + G  P +VTYN ++KG             
Sbjct: 203 PDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEF 262

Query: 55  ----------------------LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                                   +AG ++ A+ +  E+   G APN  TY  +++   +
Sbjct: 263 YLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCK 322

Query: 93  NRKYKLGLEILSAMKRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
               +  + +   M R+G  + +   +  VI     +G ++ A  +ME+M   G++  + 
Sbjct: 323 KDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQ 382

Query: 152 SYNTLINLYCKEGKLE--------------------------------------AAYLLL 173
           +YN +I  +C  G++E                                       A  LL
Sbjct: 383 TYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLL 442

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            EM ++GF   K+T   +++GL   GN   A+  L   ++ G
Sbjct: 443 MEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDILRMQSRCG 484



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G  +P   TFN+++ GLC     + AL     + +HG    + TYN++I+  C AG +  
Sbjct: 340 GVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEK 399

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK---LGLEILSAMKRKGYTFDGFGYCT 120
              +  ++GD    PN  TY  ++   F  +K +   +  ++L  M  +G+    F +  
Sbjct: 400 GLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNR 459

Query: 121 VIAAFVKIGRLKEATDYM 138
           V+   V  G    A D +
Sbjct: 460 VLNGLVITGNQDFAKDIL 477



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/157 (19%), Positives = 69/157 (43%), Gaps = 3/157 (1%)

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           S++  +++  +     +A+ L+  M          T  IL +     G    A      M
Sbjct: 103 SFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSM 162

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLP 268
           ++ G   +L ++N ++D L K  +++ A ++  +++ +   D+ +Y+ + +  C  KR P
Sbjct: 163 HEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTP 222

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            A ++L   ++ G+         ++ G   S   +EA
Sbjct: 223 MALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEA 259


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 164/341 (48%), Gaps = 40/341 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF I++  LC     D+A  + R + KHG VP  + Y  LI  L +  +
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQ 268

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD----GF 116
           +  A  +L+E+   G  P+  T+  ++    +  K     +++  M  +G+  D    GF
Sbjct: 269 VSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGF 328

Query: 117 ---GYC------------------------TVIAAFVKIGRLKEATDYM-EQMVTDGVQL 148
              G C                        T+I  +V  G+LKEA  ++ E M+  G Q 
Sbjct: 329 LLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQP 388

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DI +YN L++  CKEG L  A  L++EM ++G E +  T+ IL++GLCKAG ++ A L L
Sbjct: 389 DIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVL 448

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M+  G   N   YNC++  L +  K+  A+N+   M  K    D FTY+S+++ LCK 
Sbjct: 449 HEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKV 508

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            R+  A +L  + L  G      A     + L H+  RR A
Sbjct: 509 DRIDEAFRLFHNMLLDGA----VANNVTYNTLIHALLRRGA 545



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 147/291 (50%), Gaps = 12/291 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NI+++GLCK      A  +   + + G  P ++TY IL+ GLCKAG 
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGL 440

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L E+   G   N++ Y  ++    R  K  + L +LS M  KG   D F Y +
Sbjct: 441 LEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNS 500

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+ R+ EA      M+ DG   + V+YNTLI+   + G  + A  L+++M  +G
Sbjct: 501 LIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRG 560

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              DK T+  LI   CK GNI KG  L+ E M   G  ++  + N +++ L K GK+D+A
Sbjct: 561 CTLDKITYNGLIKAFCKVGNIEKGLELY-EQMIMDGLGADTISCNIMINGLCKVGKVDNA 619

Query: 240 INVFESME-------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              FE +        V D  TY+S+++ LCK  R+  A  L       GVR
Sbjct: 620 ---FEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVR 667



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 132/262 (50%), Gaps = 4/262 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT  +  +N ++  LC+      AL +   +   G  P+L TYN LI GLCK  R+  A 
Sbjct: 456 LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAF 515

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G   N +TY T++    R   ++  L +++ M  +G T D   Y  +I AF
Sbjct: 516 RLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +++  +  EQM+ DG+  D +S N +IN  CK GK++ A+  L +   +GF  D 
Sbjct: 576 CKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDI 635

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-- 243
            T+  +++GLCK G IK A    + +   G   +   YN  +    K+G ++ A + F  
Sbjct: 636 VTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYR 695

Query: 244 --ESMEVKDSFTYSSMVHNLCK 263
             E+  V  + T++ +V+ L K
Sbjct: 696 GIENGFVPSNLTWNVLVYTLLK 717



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 36/329 (10%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN +++GLCK     +A ++   +   GF P+ +TY  L+ GLC+ G+L  AR I
Sbjct: 286 PDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI 345

Query: 68  LKELG--------------------------------DSGHAPNAITYTTIMKCCFRNRK 95
           L ++                                 + G  P+  TY  +M    +   
Sbjct: 346 LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                ++++ M R+G   +   Y  ++    K G L+EA   + +M   G+ ++ V YN 
Sbjct: 406 LSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC 465

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI   C++ K+  A  LL EM  +G + D +T+  LI GLCK   I  A      M   G
Sbjct: 466 LICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG 525

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
             +N   YN ++  L + G    A+ +   M  +    D  TY+ ++   CK   +    
Sbjct: 526 AVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGL 585

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +L    +  G+     +   +++GL   G
Sbjct: 586 ELYEQMIMDGLGADTISCNIMINGLCKVG 614



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 44/303 (14%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++++L  L        A  +F  +   G  P + T+ I++K LC    + +A  +
Sbjct: 181 PTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSL 240

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++   G  PN+I Y T+                                   I A  +
Sbjct: 241 LRDMTKHGCVPNSIVYQTL-----------------------------------IHALSQ 265

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ EA   +E+M   G   D+ ++N +I+  CK  K+  A  L+D M  +GF  D  T
Sbjct: 266 KNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMT 325

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+ GLC+ G +  AR   + + KI   +N    N +++     G++  A +      
Sbjct: 326 YGFLLHGLCRIGKLNEAR---KILIKIPCPNN-AILNTLINGYVMSGQLKEAQSFLNETM 381

Query: 248 V-----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +      D FTY+ ++H LCK   L  A  L+    + G          +V+GL  +G  
Sbjct: 382 INFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLL 441

Query: 303 REA 305
            EA
Sbjct: 442 EEA 444



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+N +++ L +      AL +   +   G   + +TYN LIK  CK G +     + ++
Sbjct: 531 VTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQ 590

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G   + I+   ++    +  K     E L     +G+  D   Y +V+    K+GR
Sbjct: 591 MIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGR 650

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +KEA +  +++  +GV+ D  +YNT I+  CKEG +  A        + GF     T  +
Sbjct: 651 IKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNV 710

Query: 191 LIDGLCKAGN 200
           L+  L K  N
Sbjct: 711 LVYTLLKQSN 720



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 35/176 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L   T + NIM+NGLCK    DNA    R     GFVP++VTYN ++ GLCK GR
Sbjct: 591 MIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGR 650

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +   L   G  P+A TY T                                   
Sbjct: 651 IKEALNLFDRLQVEGVRPDAFTYNTF---------------------------------- 676

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            I+   K G + +A  +  + + +G     +++N L+    K+   E  + +LDE+
Sbjct: 677 -ISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 166/342 (48%), Gaps = 39/342 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           T++ +++GLCK    D A+ +  G + + GF P++VTY+ +I GLCKAGRLR A  I +E
Sbjct: 221 TYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE 280

Query: 71  LG--------------------------------DSGHAPNAITYTTIMKCCFRNRKYKL 98
           +                                 D   AP+ ITYTT+M    +  +   
Sbjct: 281 MSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDD 340

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
             E+   M     + D   + +++      GR+++A + +E++   G    I +YN +++
Sbjct: 341 AYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVD 400

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG--F 216
            YCK  ++  A  L+ +   +GF  +  T+ IL+ G C+AG    A  +L+ +N  G   
Sbjct: 401 GYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPC 460

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASK 272
            +++  Y  I+D L +DG+ D A+  +E M     V  + T++++V  LCKA +   A +
Sbjct: 461 PTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHE 520

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           LL   +K G         AVV     +G  ++A ++ S++R+
Sbjct: 521 LLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 562



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 158/306 (51%), Gaps = 9/306 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++ LCK R  D A+ +   ++  G  P  + +N++I GLC+AGRLR A  + +++
Sbjct: 82  TYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM 141

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D+ H P+ +TYT ++    +  + +  +++L  M    +  D      V+ +     R+
Sbjct: 142 NDA-HPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRV 200

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL-EAAYLLLDEMEKQGFECDKYTHTI 190
            +A + +E+M+  G+  + ++Y+ L++  CK  +L EA  LLL E+ ++GF  D  T++ 
Sbjct: 201 DDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYST 260

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +IDGLCKAG ++ A   ++   ++        YN ++    + G +D AI +   M    
Sbjct: 261 VIDGLCKAGRLRDA---VDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDN 317

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D  TY++++   CK  RL  A +L    + + +        ++VDGL   G   +A 
Sbjct: 318 CAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDAL 377

Query: 307 KIQSKI 312
           ++  +I
Sbjct: 378 ELLEEI 383



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 146/344 (42%), Gaps = 79/344 (22%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T   N+++ GLC+     +AL ++R +      P+ +TY  L+ GL KAGRLR A 
Sbjct: 111 MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKAGRLRDAV 169

Query: 66  WILKELGDSGHAP-----------------------------------NAITYTTIM--- 87
            +L+E+  + H P                                   NAITY+ ++   
Sbjct: 170 QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 229

Query: 88  -KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ------ 140
            KC   +    L   +L  + R+G+T D   Y TVI    K GRL++A D  E+      
Sbjct: 230 CKCERLDEAVAL---LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPT 286

Query: 141 --------------------------MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
                                     MV D    D+++Y TL++ +CK G+L+ AY L  
Sbjct: 287 AITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQ 346

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +M       D  T T L+DGLC  G ++ A   LE + + G    +  YNC+VD   K  
Sbjct: 347 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSN 406

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++  A  +         V ++ TY+ +V   C+A R   A + L
Sbjct: 407 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYL 450



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 115/241 (47%), Gaps = 2/241 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+  +++  CK    D+A  +F+ +  +   P++VT+  L+ GLC  GR
Sbjct: 313 MVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGR 372

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+E+   G  P   TY  ++    ++ + +   E+++  + +G+  +   Y  
Sbjct: 373 MEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNI 432

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           ++A   + GR  +A  Y++Q+ ++G      +  Y  +++  C++G+ + A    +EM +
Sbjct: 433 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQ 492

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G+     T   ++  LCKA   + A   LE M K G        + +V    + G I  
Sbjct: 493 RGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQK 552

Query: 239 A 239
           A
Sbjct: 553 A 553



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 5/173 (2%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEG 164
           M   GY  D   +  V+       +L+     +   + D G+  D V  NT++   C   
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
               A  L D+M + G   +  T+  LI  LCKA  +  A   L  M   G +     +N
Sbjct: 61  DTTTAMALFDKMAELG-AVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHN 119

Query: 225 CIVDRLGKDGKIDHAINVFESM---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
            ++  L + G++ HA+ V+  M      D  TY+ +VH L KA RL  A ++L
Sbjct: 120 VVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVL 172



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 8   PCT---ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           PC    A + I+L+ LC++  TD+A++ +  + + G+VP   T+  ++  LCKA + + A
Sbjct: 459 PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQA 518

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
             +L+E+   GH P   T   ++    R    +   E+ S ++
Sbjct: 519 HELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 561


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 147/305 (48%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++ G C     D A  +   +      P + T+N L+ GLCK G++R A+ +
Sbjct: 222 PNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSL 281

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G  P+  TY  +M   F  ++      + + M + G T D   Y  +I+   K
Sbjct: 282 VAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSK 341

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +  L EA D  E M  + V  D+V+Y++LI+  CK G++ +A   +DEM  +G   +  T
Sbjct: 342 MKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVIT 401

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LID LCK+  +  A   L+ +   G  +N+  YN +VD L KDG++  A  VF+ + 
Sbjct: 402 YTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLL 461

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +K    D  TYS M++ LCK      A  LL      G      A + +++         
Sbjct: 462 MKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMND 521

Query: 304 EAKKI 308
           +A+K+
Sbjct: 522 KAEKL 526



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 148/312 (47%), Gaps = 8/312 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++GLCK++   +A  ++  + +    P +VTY  LI G C  G+L  A  +
Sbjct: 187 PDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL 246

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      PN  T+ T++    +  K +    +++ M ++G   D F Y  ++  +  
Sbjct: 247 LNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFL 306

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +    +A +    M   GV  D+ SY+ +I+   K   L+ A  L + M  +    D   
Sbjct: 307 VKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVA 366

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLCK+G I  A  +++ M+  G   N+  Y  ++D L K  ++D AI + +  +
Sbjct: 367 YSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLK--K 424

Query: 248 VKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           +KD       +TY+ +V  LCK  RL  A K+    L  G  +       +++GL     
Sbjct: 425 IKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESL 484

Query: 302 RREAKKIQSKIR 313
             EA  + SK+ 
Sbjct: 485 FDEALTLLSKME 496



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 153/310 (49%), Gaps = 8/310 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++NGLCK   T  ALR+ R ++     P++V YN +I GLCK   +R A  +  E
Sbjct: 155 VSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCE 214

Query: 71  LGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           + +    PN +TYT+++   C         GL  L+ M  K    +   + T++    K 
Sbjct: 215 MFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL--LNEMVLKNVNPNVCTFNTLVDGLCKE 272

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G+++EA   +  M+ +GV  D+ +YN L++ Y    +   A  + + M + G  CD +++
Sbjct: 273 GKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSY 332

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-- 246
           +++I GL K   +  A    E M       ++ AY+ ++D L K G+I+ A+   + M  
Sbjct: 333 SVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHD 392

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
             +  +  TY+S++  LCK+ ++  A  LL      G++        +VDGL   G   +
Sbjct: 393 RGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTD 452

Query: 305 AKKIQSKIRM 314
           A+K+   + M
Sbjct: 453 AQKVFQDLLM 462



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 133/269 (49%), Gaps = 4/269 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++ GLC N     +L     L   G   + V+Y  LI GLCK G+   A  +
Sbjct: 117 PDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRL 176

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      P+ + Y TI+    +++  +   ++   M  K    +   Y ++I  F  
Sbjct: 177 LRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCI 236

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L +A   + +MV   V  ++ ++NTL++  CKEGK+  A  L+  M K+G   D +T
Sbjct: 237 VGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFT 296

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG         A+     M ++G   ++ +Y+ ++  L K   +D A+++FE M 
Sbjct: 297 YNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMR 356

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASK 272
               + D   YSS++  LCK+ R+ SA K
Sbjct: 357 NENVIPDVVAYSSLIDGLCKSGRINSALK 385



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 144/333 (43%), Gaps = 39/333 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F  +L  L K ++    + +F+ ++ HG     +T NILI   C   ++ +A  
Sbjct: 46  PPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFS 105

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  ++   G+ P+ ITYTT+++    N + K  L     +  +G   D   Y T+I    
Sbjct: 106 VFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLC 165

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE----------------------- 163
           KIG+   A   + ++  +  + D+V YNT+I+  CK+                       
Sbjct: 166 KIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVV 225

Query: 164 ------------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                       G+L+ A+ LL+EM  +    +  T   L+DGLCK G ++ A+  +  M
Sbjct: 226 TYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVM 285

Query: 212 NKIGFDSNLEAYNCIVD---RLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRL 267
            K G   ++  YN ++D    + + GK  +  N+   M V  D  +YS M+  L K K L
Sbjct: 286 MKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKML 345

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             A  L        V     A  +++DGL  SG
Sbjct: 346 DEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSG 378



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 35/235 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++++M++GL K +  D A+ +F G++    +P++V Y+ LI GLCK+GR+ +A   + E+
Sbjct: 331 SYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEM 390

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  PN ITYT++                                   I A  K  ++
Sbjct: 391 HDRGQPPNVITYTSL-----------------------------------IDALCKSHQV 415

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A   ++++   G+Q ++ +YN L++  CK+G+L  A  +  ++  +G   D  T++I+
Sbjct: 416 DKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIM 475

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           I+GLCK      A   L  M   G   +  AY  I++   +    D A  +   M
Sbjct: 476 INGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+  +++ LCK+   D A+ + + ++  G    + TYNIL+ GLCK GRL  A+ 
Sbjct: 396 PPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQK 455

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + ++L   GH  + +TY+ ++    +   +   L +LS M+ KG   D   Y T+I AF 
Sbjct: 456 VFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFF 515

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSY 153
           +    K+  D  E+++ +   +D V Y
Sbjct: 516 E----KDMNDKAEKLLRE--MIDCVDY 536



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 6/192 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P    ++ +++GLCK+   ++AL+    +   G  P ++TY  LI  LCK+ ++  A
Sbjct: 359 NVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKA 418

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +LK++ D G   N  TY  ++    ++ +     ++   +  KG+  D   Y  +I  
Sbjct: 419 IALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMING 478

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM------EK 178
             K     EA   + +M   G   D ++Y T+IN + ++   + A  LL EM      + 
Sbjct: 479 LCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMIDCVDYKD 538

Query: 179 QGFECDKYTHTI 190
            G  CD+Y   I
Sbjct: 539 NGDTCDQYDEFI 550



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 4/185 (2%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F  +  L +A D   +M+       I+ +  ++    K         L   ME  G + +
Sbjct: 24  FHSLPNLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSN 83

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T  ILI+  C    I  A      + K+G+  ++  Y  ++  L  +G++  ++N  +
Sbjct: 84  YITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHD 143

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +  +    D  +Y ++++ LCK  +   A +LL        R        ++DGL    
Sbjct: 144 RLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDK 203

Query: 301 CRREA 305
             R+A
Sbjct: 204 LVRDA 208


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 145/279 (51%), Gaps = 4/279 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ I+++ LCK+    +A  +   + + G  P +VTYN LI G CK G +  A  
Sbjct: 99  APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVV 158

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  ++ ++  +P+  TY  ++    +  + + G ++L  M + G   +   Y T++ + V
Sbjct: 159 LFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLV 218

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G+  +A +  + M+    +    ++N +I+++CK G+L+ AY L   M  +G   D Y
Sbjct: 219 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY 278

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ I+I G C+A  I  AR  LE M + G   ++  YN IV  L K  ++D A  V+E +
Sbjct: 279 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL 338

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                  D  T S+++  LCK++RL  A KLL    ++G
Sbjct: 339 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG 377



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 156/316 (49%), Gaps = 5/316 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +CG  +P + T++ ++NG CK R    A R+   ++K G VP    YN +IKGLC  GR+
Sbjct: 25  LCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRV 84

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
            +A    +++     AP+ ITYT ++    ++ +      IL  M   G   +   Y T+
Sbjct: 85  DSALVHYRDM-QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTL 143

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F K+G + EA     QM+ +    D+ +YN LI+ YCK+ + +    LL EM K G 
Sbjct: 144 INGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGC 203

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E +  T+  L+D L K+G    A    + M +     +   +N ++D   K G++D A  
Sbjct: 204 EPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 263

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +F+ M     + D +TY+ M+   C+A R+  A +LL    ++G         ++V GL 
Sbjct: 264 LFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLC 323

Query: 298 HSGCRREAKKIQSKIR 313
            +    EA ++   +R
Sbjct: 324 KASQVDEAYEVYEVLR 339



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 143/308 (46%), Gaps = 4/308 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+N ++NG CK    D A+ +F  + ++   P++ TYNILI G CK  R
Sbjct: 128 MIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQER 187

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +    +L+E+   G  PN ITY T+M    ++ KY     +   M R+      F +  
Sbjct: 188 PQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNL 247

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+G+L  A +  + M   G   DI +YN +I+  C+  +++ A  LL+ M + G
Sbjct: 248 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 307

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  ++ GLCKA  +  A    E +   G+  ++   + ++D L K  ++D A 
Sbjct: 308 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE 367

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME      D   Y+ ++H  CKA +L  +       L  G          V+D L
Sbjct: 368 KLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKL 427

Query: 297 RHSGCRRE 304
             S   R+
Sbjct: 428 CKSARVRD 435



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 111/211 (52%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   TFN+M++  CK    D A  +F+ +   G +P++ TYNI+I G C+A R+  A
Sbjct: 237 DCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDA 296

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +L+ + ++G  P+ +TY +I+    +  +     E+   ++  GY  D     T+I  
Sbjct: 297 RQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDG 356

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K  RL +A   + +M  +G   D+V+Y  LI+ +CK  +L+ +     EM  +G    
Sbjct: 357 LCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT 416

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
             T++I+ID LCK+  ++   + L+ M + G
Sbjct: 417 VITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 99/218 (45%), Gaps = 38/218 (17%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++AFV+  + +EA D  +  +      D ++Y+TLIN +CK    + AY LLDEMEK+G
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 181 FE-------------CDK---------------------YTHTILIDGLCKAGNIKGARL 206
                          CD                       T+TIL+D LCK+  I  A L
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASL 123

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
            LE M + G   N+  YN +++   K G +D A+ +F  M       D FTY+ ++   C
Sbjct: 124 ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYC 183

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           K +R    +KLL   +K G          ++D L  SG
Sbjct: 184 KQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSG 221



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N +++GLCK    D A  ++  L+  G+  ++VT + LI GLCK+ RL  A  
Sbjct: 309 PPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEK 368

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+  +G AP+ + YT ++    +  +    L   S M  KG       Y  VI    
Sbjct: 369 LLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLC 428

Query: 127 KIGRLKEATDYMEQMVTDGV 146
           K  R+++    ++ M+  GV
Sbjct: 429 KSARVRDGCMLLKTMLERGV 448


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 164/341 (48%), Gaps = 40/341 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF I++  LC     D+A  + R + KHG VP  + Y  LI  L +  +
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQ 268

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD----GF 116
           +  A  +L+E+   G  P+  T+  ++    +  K     +++  M  +G+  D    GF
Sbjct: 269 VSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGF 328

Query: 117 ---GYC------------------------TVIAAFVKIGRLKEATDYM-EQMVTDGVQL 148
              G C                        T+I  +V  G+LKEA  ++ E M+  G Q 
Sbjct: 329 LLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQP 388

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DI +YN L++  CKEG L  A  L++EM ++G E +  T+ IL++GLCKAG ++ A L L
Sbjct: 389 DIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVL 448

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M+  G   N   YNC++  L +  K+  A+N+   M  K    D FTY+S+++ LCK 
Sbjct: 449 HEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKV 508

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            R+  A +L  + L  G      A     + L H+  RR A
Sbjct: 509 DRIDEAFRLFHNMLLDGA----VANNVTYNTLIHALLRRGA 545



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 147/291 (50%), Gaps = 12/291 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NI+++GLCK      A  +   + + G  P ++TY IL+ GLCKAG 
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGL 440

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L E+   G   N++ Y  ++    R  K  + L +LS M  KG   D F Y +
Sbjct: 441 LEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNS 500

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+ R+ EA      M+ DG   + V+YNTLI+   + G  + A  L+++M  +G
Sbjct: 501 LIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRG 560

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              DK T+  LI   CK GNI KG  L+ E M   G  ++  + N +++ L K GK+D+A
Sbjct: 561 CTLDKITYNGLIKAFCKVGNIEKGLELY-EQMIMDGLGADTISCNIMINGLCKVGKVDNA 619

Query: 240 INVFESME-------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              FE +        V D  TY+S+++ LCK  R+  A  L       GVR
Sbjct: 620 ---FEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVR 667



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 131/262 (50%), Gaps = 4/262 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT  +  +N ++  LC+      AL +   +   G  P+L TYN LI GLCK  R+  A 
Sbjct: 456 LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAF 515

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G   N +TY T++    R   ++  L +++ M  +G T D   Y  +I AF
Sbjct: 516 RLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +++  +  EQM+ DG+  D +S N +IN  CK GK++ A+  L +   +GF  D 
Sbjct: 576 CKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDI 635

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-- 243
            T+  +++GLCK G IK A    + +   G   +   YN  +    K+G ++ A   F  
Sbjct: 636 VTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYR 695

Query: 244 --ESMEVKDSFTYSSMVHNLCK 263
             E+  V  + T++ +V+ L K
Sbjct: 696 GIENGFVPSNLTWNVLVYTLLK 717



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 36/329 (10%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN +++GLCK     +A ++   +   GF P+ +TY  L+ GLC+ G+L  AR I
Sbjct: 286 PDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI 345

Query: 68  LKELG--------------------------------DSGHAPNAITYTTIMKCCFRNRK 95
           L ++                                 + G  P+  TY  +M    +   
Sbjct: 346 LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                ++++ M R+G   +   Y  ++    K G L+EA   + +M   G+ ++ V YN 
Sbjct: 406 LSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC 465

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI   C++ K+  A  LL EM  +G + D +T+  LI GLCK   I  A      M   G
Sbjct: 466 LICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG 525

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
             +N   YN ++  L + G    A+ +   M  +    D  TY+ ++   CK   +    
Sbjct: 526 AVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGL 585

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +L    +  G+     +   +++GL   G
Sbjct: 586 ELYEQMIMDGLGADTISCNIMINGLCKVG 614



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 119/268 (44%), Gaps = 9/268 (3%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P   +Y+++++ L      + A  +  ++   G +P   T+  +MK      +      +
Sbjct: 181 PTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSL 240

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  M + G   +   Y T+I A  +  ++ EA   +E+M   G   D+ ++N +I+  CK
Sbjct: 241 LRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCK 300

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
             K+  A  L+D M  +GF  D  T+  L+ GLC+ G +  AR   + + KI   +N   
Sbjct: 301 VNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEAR---KILIKIPCPNN-AI 356

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEV-----KDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            N +++     G++  A +      +      D FTY+ ++H LCK   L  A  L+   
Sbjct: 357 LNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEM 416

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREA 305
            + G          +V+GL  +G   EA
Sbjct: 417 SRRGCEPNVITYAILVNGLCKAGLLEEA 444



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 49/87 (56%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L   T + NIM+NGLCK    DNA    R     GFVP++VTYN ++ GLCK GR
Sbjct: 591 MIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGR 650

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM 87
           ++ A  +   L   G  P+A TY T +
Sbjct: 651 IKEALNLFDRLQVEGVRPDAFTYNTFI 677


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 154/316 (48%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN +L GLCK+R  D A  +FR + +    P++ ++NILI G C+ G +  A 
Sbjct: 223 LKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAM 282

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              KE+   G  P+ ++++ ++       K       L  MK  G   DG  Y  VI  F
Sbjct: 283 KFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGF 342

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA    ++MV  G   D+V+YNTL+N  CK+ +L  A  LL+EM+++G   D 
Sbjct: 343 CRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDL 402

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T T LI G C+ GN + A    + +       ++ AYN ++D + + G +  A  +++ 
Sbjct: 403 CTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDD 462

Query: 246 MEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  ++ F    TYS ++ + C+  ++  A   L   +  G         +++ G   SG 
Sbjct: 463 MHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGN 522

Query: 302 RREAKKIQSKIRMAKI 317
            ++ ++   K+    I
Sbjct: 523 VKKGQQFLQKMMQDNI 538



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 158/311 (50%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + +++ G C+      ALR+   +   G +P++VTYN L+ GLCK  RL  A 
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAE 387

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+ + G  P+  T+TT++    R+  ++  L++   +  +    D   Y ++I   
Sbjct: 388 ELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGM 447

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L +A +  + M    +  + V+Y+ LI+ +C++G++E A+  LDEM  +G   + 
Sbjct: 448 CRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNI 507

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I G C++GN+K  +  L+ M +     +L  +N ++    K+  +  A NVF  
Sbjct: 508 MTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNI 567

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME +    D+ TY+ +++   +   +  A ++      SG+   +    ++++G   +G 
Sbjct: 568 MEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGN 627

Query: 302 RREAKKIQSKI 312
            +EA ++  ++
Sbjct: 628 SKEAFQLHDEM 638



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 156/310 (50%), Gaps = 4/310 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM++  CK+   D A  +   ++K    P++VT+N+LI    +AG +  A  ++  +
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P  +T+ +++K   ++R++    E+  AM +     D   +  +I  F ++G +
Sbjct: 219 ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA  + ++M   GV  D+VS++ LI L+   GK++ A   L EM+  G   D   +T++
Sbjct: 279 EEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMV 338

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I G C+AG++  A    + M  +G   ++  YN +++ L K  ++  A  +   M+    
Sbjct: 339 IGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGV 398

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  T+++++H  C+      A +L  + L   +R    A  +++DG+   G   +A +
Sbjct: 399 TPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANE 458

Query: 308 IQSKIRMAKI 317
           +   +   +I
Sbjct: 459 LWDDMHAREI 468



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 90/180 (50%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T++I+++  C+    + A      +   G +P ++TYN +IKG C++G ++  
Sbjct: 467 EIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKG 526

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           +  L+++      P+ IT+ T++    +         + + M+++    D   Y  +I  
Sbjct: 527 QQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIING 586

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F + G ++EA    ++M   G++ D  +Y +LIN +   G  + A+ L DEM  +GF  D
Sbjct: 587 FSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 121/277 (43%), Gaps = 4/277 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++    TP    F++++    ++R    A   FR L  H         N L+  L +AG 
Sbjct: 78  LLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGW 137

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A    + +  S    NA T   ++    ++ ++     ++S M+++    D   +  
Sbjct: 138 PHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNV 197

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  + G +  A   ++ M   G++  IV++N+++   CK  + + A  +   M++  
Sbjct: 198 LIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCS 257

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  +  ILI G C+ G ++ A    + M + G   ++ +++C++      GK+DHA 
Sbjct: 258 VAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAA 317

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
                M+    V D   Y+ ++   C+A  +  A ++
Sbjct: 318 AYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFN +++G  K      A  +F  ++K    P+ VTYN++I G  + G 
Sbjct: 533 MMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGN 592

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           +  A  + K++G SG  P+  TY +++         K   ++   M  +G+  D
Sbjct: 593 MEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 153/322 (47%), Gaps = 4/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N M++G  K    +   R+   +   G  P +VTYN+L+ GLC+AGR
Sbjct: 220 MVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGR 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   R ++ E+      P+  TY+ +     R  + +  L + +   +KG     +    
Sbjct: 280 MDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSI 339

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G++ +A   +E +V  G+    V YNTLIN YC+   L  A+ + ++M+ + 
Sbjct: 340 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI+GLCK   +  A   +  M K G D ++E +N ++D  G  G+++   
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   M+ K    D  ++ S+V   CK  ++P A  +L   +   V        +++D  
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
             SG   +A  +  K++ + +S
Sbjct: 520 IESGDTEQAFLLVEKMKNSGVS 541



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 120/252 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGLCK      A  +   ++K G  P + T+N LI     AG+L    
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G   + I++ +++K   +N K    + IL  M  K    +   Y ++I A+
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++ G  ++A   +E+M   GV   IV+YN L+   C+  +++ A  L+  +  QG   D 
Sbjct: 520 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 579

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  +I   C  G+   A   L+ MNK G    L  Y+ +V  L   G++     +++ 
Sbjct: 580 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 639

Query: 246 MEVKDSFTYSSM 257
           M  K+    SS+
Sbjct: 640 MLHKNVEPSSSI 651



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 132/288 (45%), Gaps = 6/288 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFR--GLQKHGFVPELVTYNILIKGLCKA 58
           ++     P T  +N ++         D AL M R  G  +    P+  +YN++I GL ++
Sbjct: 148 LVAAGARPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRS 207

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           G+   A  +  E+ D G  PN ITY T++    +    + G  +   M   G   +   Y
Sbjct: 208 GKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTY 267

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +++   + GR+ E    M++M +  +  D  +Y+ L +   + G+      L  E  K
Sbjct: 268 NVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLK 327

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G     YT +IL++GLCK G +  A   LE +   G       YN +++   +   +  
Sbjct: 328 KGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRG 387

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           A  +FE M+ +    D  TY+++++ LCK + +  A  L++   KSGV
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGV 435



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 124/247 (50%), Gaps = 6/247 (2%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
           +P L + N+L++ L   GR    R     L  +G  P+   +  +++ C       + L 
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 102 ILSAMKRK--GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           ++  M R       D F Y  VIA   + G+  +A    ++MV  GV  + ++YNT+I+ 
Sbjct: 179 MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 238

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           + K G LEA + L D+M   G + +  T+ +L+ GLC+AG +   R+ ++ M       +
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD 298

Query: 220 LEAYNCIVDRLGKDGKIDHAINVF-ESME---VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y+ + D L + G+    +++F ES++   +  ++T S +++ LCK  ++  A ++L 
Sbjct: 299 GFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLE 358

Query: 276 SCLKSGV 282
             + +G+
Sbjct: 359 MLVHTGL 365



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 3/234 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN +++        +    +   +Q+ G   +++++  ++K  CK G++  A 
Sbjct: 435 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAV 494

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL ++     APNA  Y +I+     +   +    ++  MK  G +     Y  ++   
Sbjct: 495 AILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGL 554

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  ++ EA + +  +   G++ D+VSYNT+I+  C +G  + A  LL EM K G     
Sbjct: 555 CRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTL 614

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKI 236
            T+  L+  L  AG +       + M     + +   Y  +VD   R   D K+
Sbjct: 615 RTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKV 668



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D+ P    +N +++   ++  T+ A  +   ++  G    +VTYN+L+KGLC++ +
Sbjct: 500 MIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 559

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++  L + G  P+ ++Y TI+  C         LE+L  M + G       Y T
Sbjct: 560 IDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHT 619

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++A    GR+ +     +QM+   V+     Y  +++ Y +         L  EM ++G
Sbjct: 620 LVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 679

Query: 181 FECD 184
              D
Sbjct: 680 IAFD 683


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 159/311 (51%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFNI++ G C+  +   A  +   + ++  VP+  TYN++I G CK GR+  A 
Sbjct: 263 LFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAM 322

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ +   +P+ +TY T++  CF +   + G +++  M+ +G   +   Y  ++  F
Sbjct: 323 RLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWF 382

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK G++ E    + +M   G   DIV+YNTLI+ +CK GK++ A+ L+DEM ++G + D 
Sbjct: 383 VKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDD 442

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   ++  LC+   +  A   L    + G+  +  +Y  ++    K  K   A+ +++ 
Sbjct: 443 VTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDE 502

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ K+      TY+SM+  LC+  +   A   L   L+SG+   +     ++ G    G 
Sbjct: 503 MKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQ 562

Query: 302 RREAKKIQSKI 312
             +A +  +K+
Sbjct: 563 VEKAFQFHNKM 573



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 146/277 (52%), Gaps = 6/277 (2%)

Query: 10  TATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           T +FNI+++G C +NR+ + A+R+   ++ +G  P+ +TYN ++ GLCK GRL  AR +L
Sbjct: 197 TNSFNILIHGSCMENRFGE-AIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLL 255

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
            ++ + G  PN  T+  ++  C R    K    ++  M +     D + Y  +I+ F K 
Sbjct: 256 LDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQ 315

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           GR+ EA    E+M    +  D+V+YNTLIN   + G  E  + L++EME +G + +  T+
Sbjct: 316 GRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTY 375

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            +++    K G +      +  M + G   ++  YN ++    K GK+D A  + + M  
Sbjct: 376 NVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGR 435

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           K    D  T ++M+  LC+ ++L  A  LL S  + G
Sbjct: 436 KGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRG 472



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 158/311 (50%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P + T+N+M+    K    D   +  R +++ G +P++VTYN LI   CK G++  A 
Sbjct: 368 MKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAF 427

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+G  G   + +T  T+++   R RK     ++L + +R+GY  D   Y T+I  +
Sbjct: 428 RLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGY 487

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +  +A    ++M    +   I++YN++I   C+ GK   A   LDE+ + G   D+
Sbjct: 488 FKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDE 547

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I G C+ G ++ A      M +  F  ++   N ++  L K+G ++ A+ +F +
Sbjct: 548 ITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNT 607

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
              K    D+ +Y++++ +LCK KR   A  LL    +  +        A++ GL  +G 
Sbjct: 608 WISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGR 667

Query: 302 RREAKKIQSKI 312
            ++A++  SKI
Sbjct: 668 MKDAEEFISKI 678



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 8/256 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++ G  K+     ALR++  +++   +P ++TYN +I GLC+ G+   A   L E
Sbjct: 478 VSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDE 537

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           L +SG  P+ ITY TI+    +  + +   +  + M  K +  D     T++    K G 
Sbjct: 538 LLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGM 597

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L++A       ++ G  +D VSYNT+I   CKE +   A+ LL+EME++    D YT+  
Sbjct: 598 LEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNA 657

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           ++ GL  AG +K A    E+++KI      E  N  ++ LGK  + D   +        +
Sbjct: 658 ILGGLTDAGRMKDAE---EFISKIAEKGKSE--NQFLE-LGK--RQDARTSEIPQEPHPN 709

Query: 251 SFTYSSMVHNLCKAKR 266
           +  YS+ ++ LC   R
Sbjct: 710 AIAYSNKINELCSQGR 725



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 9/261 (3%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCK---AGRLRTARWILKELGDSGHAPNAITYTT 85
           A ++F  +++ G  P L+T N L+  L +   +  +R ++ +  +    G   N  ++  
Sbjct: 143 AAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNI 202

Query: 86  IMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           ++   C  NR +   + +L  M+  G   D   Y T++    K GRL EA D +  M   
Sbjct: 203 LIHGSCMENR-FGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNK 261

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G+  +  ++N L+   C+ G L+ A  +++ M +     D +T+ ++I G CK G I  A
Sbjct: 262 GLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEA 321

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
               E M  +    ++  YN +++   + G  +    + E ME +    +S TY+ MV  
Sbjct: 322 MRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKW 381

Query: 261 LCKAKRLPSASKLLLSCLKSG 281
             K  ++    K +    +SG
Sbjct: 382 FVKKGKMDEVDKTVRKMEESG 402



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 86/176 (48%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+N M+ GLC+   T+ A+     L + G VP+ +TYN +I G C+ G++  A
Sbjct: 507 EIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKA 566

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
                ++ +    P+ +T  T++    +    +  L++ +    KG   D   Y T+I +
Sbjct: 567 FQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILS 626

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
             K  R  EA D +E+M    +  D  +YN ++      G+++ A   + ++ ++G
Sbjct: 627 LCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKG 682



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 78/194 (40%), Gaps = 42/194 (21%)

Query: 122 IAAFVKIGRLKEATDYMEQM----------------------------------VTD--- 144
           I A+V  GR  +A     +M                                   TD   
Sbjct: 131 IGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIK 190

Query: 145 -GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            GV+++  S+N LI+  C E +   A  +L +M   G   D  T+  ++DGLCK G +  
Sbjct: 191 IGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNE 250

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVH 259
           AR  L  M   G   N   +N +V    + G +  A NV E M     V D++TY+ M+ 
Sbjct: 251 ARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMIS 310

Query: 260 NLCKAKRLPSASKL 273
             CK  R+  A +L
Sbjct: 311 GFCKQGRIAEAMRL 324



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T N +L GLCK    + AL++F      G   + V+YN +I  LCK  R
Sbjct: 573 MVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKR 632

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L+E+ +    P+  TY  I+       + K   E +S +  KG + +      
Sbjct: 633 FGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSEN------ 686

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
               F+++G+ ++A       +      + ++Y+  IN  C +G+
Sbjct: 687 ---QFLELGKRQDART---SEIPQEPHPNAIAYSNKINELCSQGR 725



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN---K 213
           I  Y   G+   A  + + M++ G +    T   L++ L +  +    RL         K
Sbjct: 131 IGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIK 190

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPS 269
           IG   N  ++N ++     + +   AI V   M       D+ TY++++  LCK  RL  
Sbjct: 191 IGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNE 250

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           A  LLL     G+   ++    +V G    G  +EA  +
Sbjct: 251 ARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANV 289


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 125/242 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+ D+G  PN +T+TT++    +N K  L +EI   M  +G+  D   Y T+I   
Sbjct: 227 EMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L +A D +E+M+  G++ D ++Y TLI+  CKEG LE  + L   M ++    D+
Sbjct: 287 CRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDE 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +  A  +   
Sbjct: 347 VTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLRE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 146/302 (48%), Gaps = 4/302 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K RY       ++ + + G+ P L  +NIL+   CK G +R A+ +   +    
Sbjct: 107 VLEHLMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWS 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++ EA 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + + +M+ +G+  + V++ TLI+ +CK GK++ A  +  +M  QGF  D  T+  LI GL
Sbjct: 227 EMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           C+ G++  AR  +E M   G   +   Y  ++D   K+G ++    + + M  +    D 
Sbjct: 287 CRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDE 346

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
            TY++++  LC+  R   A K+L   L  G++        +++    +G  + A K+  +
Sbjct: 347 VTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLRE 406

Query: 312 IR 313
           ++
Sbjct: 407 MQ 408



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 137/283 (48%), Gaps = 5/283 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P    FNI+++  CK      A  +F  + K    P +V++N L+ G  + G L 
Sbjct: 130 CG-YPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLD 188

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
               +   +  +G  P+  TY+ ++    +  K     E+L+ M   G   +G  + T+I
Sbjct: 189 EGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLI 248

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K G++  A +  +QM++ G   D+++YNTLI   C+ G L  A  L++EM  +G +
Sbjct: 249 DGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLK 308

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            DK T+T LIDG CK G+++      + M +     +   Y  ++  L ++G+   A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKM 368

Query: 243 FESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
              M       D+ TY+ +++  CK   + +ASKLL    ++G
Sbjct: 369 LREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNG 411



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 101/180 (56%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +   GF+P+L+TYN LI GLC+ G 
Sbjct: 232 MLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGD 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +++E+   G  P+ ITYTT++    +    ++  E+   M R+    D   Y  
Sbjct: 292 LGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTA 351

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M+T G++ D  +Y  ++N +CK G ++ A  LL EM++ G
Sbjct: 352 LISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNG 411



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+  +++GLC+     +A +M R +   G  P+  TY +++   CK G ++TA  +L+E
Sbjct: 347 VTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLRE 406

Query: 71  LGDSGHAPNAIT 82
           +  +G  P  +T
Sbjct: 407 MQRNGPVPGVVT 418


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 145/278 (52%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ I+++ LCK+    +A  +   + + G  P +VTYN LI G CK G +  A  +
Sbjct: 234 PSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVL 293

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ ++  +P+  TY  ++    +  + + G ++L  M + G   +   Y T++ + VK
Sbjct: 294 FNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVK 353

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +A +  + M+    +    ++N +I+++CK G+L+ AY L   M  +G   D YT
Sbjct: 354 SGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYT 413

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + I+I G C+A  I  AR  LE M + G   ++  YN IV  L K  ++D A  V+E + 
Sbjct: 414 YNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLR 473

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                 D  T S+++  LCK++RL  A KLL    ++G
Sbjct: 474 NGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG 511



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 146/304 (48%), Gaps = 4/304 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   TFN+M++  CK    D A  +F+ +   G +P++ TYNI+I G C+A R
Sbjct: 367 MLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANR 426

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +L+ + ++G  P+ +TY +I+    +  +     E+   ++  GY  D     T
Sbjct: 427 IDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCST 486

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  RL +A   + +M  +G   D+V+Y  LI+ +CK  +L+ +     EM  +G
Sbjct: 487 LIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKG 546

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T++I+ID LCK+  ++   + L+ M + G   +   Y  ++D L K    D A 
Sbjct: 547 CVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAY 606

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +++ M+         TY+ +V  LCK  RL  A  LL      G         +V DG 
Sbjct: 607 ELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGF 666

Query: 297 RHSG 300
             S 
Sbjct: 667 WKSA 670



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 155/315 (49%), Gaps = 5/315 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG  +P + T++ ++NG CK R    A R+   ++K G VP    YN +IKGLC  GR+ 
Sbjct: 160 CGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVD 219

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           +A    +++     AP+ ITYT ++    ++ +      IL  M   G   +   Y T+I
Sbjct: 220 SALVHYRDM-QRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLI 278

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K+G + EA     QM+ +    D+ +YN LI+ YCK+ + +    LL EM K G E
Sbjct: 279 NGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE 338

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+  L+D L K+G    A    + M +     +   +N ++D   K G++D A  +
Sbjct: 339 PNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYEL 398

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F+ M     + D +TY+ M+   C+A R+  A +LL    ++G         ++V GL  
Sbjct: 399 FQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 458

Query: 299 SGCRREAKKIQSKIR 313
           +    EA ++   +R
Sbjct: 459 ASQVDEAYEVYEVLR 473



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 157/347 (45%), Gaps = 39/347 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+N ++NG CK    D A+ +F  + ++   P++ TYNILI G CK  R
Sbjct: 262 MIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQER 321

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY------------------------ 96
            +    +L+E+   G  PN ITY T+M    ++ KY                        
Sbjct: 322 PQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNL 381

Query: 97  -----------KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                       L  E+   M  +G   D + Y  +I+   +  R+ +A   +E+M   G
Sbjct: 382 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 441

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
              D+V+YN++++  CK  +++ AY + + +   G+  D  T + LIDGLCK+  +  A 
Sbjct: 442 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE 501

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
             L  M + G   ++ AY  ++    K  ++D ++  F  M     V    TYS ++  L
Sbjct: 502 KLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKL 561

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           CK+ R+     LL + L+ GV        +V+DGL  S    EA ++
Sbjct: 562 CKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYEL 608



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 143/271 (52%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NIM++G C+    D+A ++   + + G  P++VTYN ++ GLCKA ++  A  +
Sbjct: 409 PDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEV 468

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + L + G+  + +T +T++    ++R+     ++L  M+R G   D   Y  +I  F K
Sbjct: 469 YEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCK 528

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +L ++  +  +M+  G    +++Y+ +I+  CK  ++    +LL  M ++G   D   
Sbjct: 529 ADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIV 588

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +IDGLCK+ +   A    + M + G    +  YN +VD+L K  ++D AI++ E ME
Sbjct: 589 YTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVME 648

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + D+ TY+S+     K+     A +L 
Sbjct: 649 SDGCLPDTVTYNSVFDGFWKSAEHDKAFRLF 679



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 118/233 (50%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T + +++GLCK+R  D+A ++ R ++++G  P++V Y ILI G CKA +L  +     E+
Sbjct: 483 TCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEM 542

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  P  ITY+ ++    ++ + + G  +L  M  +G T D   Y +VI    K    
Sbjct: 543 LDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSY 602

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA +  + M   G    +V+YN L++  CK  +L+ A  LL+ ME  G   D  T+  +
Sbjct: 603 DEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSV 662

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            DG  K+     A    + M   G       Y+ ++ +L  + K+D A+ ++E
Sbjct: 663 FDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWE 715



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    + I+++G CK    D +L  F  +   G VP ++TY+I+I  LCK+ R+R    +
Sbjct: 514 PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 573

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK + + G  P+AI YT+++    ++  Y    E+   MK+ G       Y  ++    K
Sbjct: 574 LKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK 633

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + RL EA   +E M +DG   D V+YN++ + + K  + + A+ L   M+ +G     + 
Sbjct: 634 VSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFM 693

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           +++L+  L     +  A    E   + G D + E
Sbjct: 694 YSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPE 727



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 76/144 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP    +  +++GLCK+   D A  +++ +++ G  P +VTYN+L+  LCK  RL  A 
Sbjct: 582 VTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAI 641

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ +   G  P+ +TY ++    +++ ++     +  AMK +G +   F Y  ++   
Sbjct: 642 HLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKL 701

Query: 126 VKIGRLKEATDYMEQMVTDGVQLD 149
           V   ++ +A +  E+ +  G  +D
Sbjct: 702 VAEEKMDQAMEIWEEALEAGADVD 725


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 38/345 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++ G CK+R     L +   + + GF P++VTY+ +I GLCKAGRLR A  I
Sbjct: 177 PDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDI 236

Query: 68  LKELG--------------------------------DSGHAPNAITYTTIMKCCFRNRK 95
            +E+                                 D   AP+ +TYTT+M    +  +
Sbjct: 237 FEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGR 296

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                E+   M     + D   + +++      GR+++A + +E++   G    I +YN 
Sbjct: 297 LDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNC 356

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +++ YCK  ++  A  L+ +   +GF  +  T+ IL+ G C+AG    A  +L+ +N  G
Sbjct: 357 VVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 416

Query: 216 --FDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPS 269
               +++  Y  I+D L +DG+ D A+  +E M     V  + T++++V  LCKA +   
Sbjct: 417 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQ 476

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           A +LL   +K G         AVV     +G  ++A ++ S++R+
Sbjct: 477 AHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 521



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 152/305 (49%), Gaps = 7/305 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++GL K R   +A+++ + +     VP+  T  ++++ LC   R+  AR +++E+
Sbjct: 41  TYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM 100

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G A NAITY+ ++    +  +    + ++  M  +G       Y ++I  F +  R+
Sbjct: 101 LHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRV 160

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA  +MEQMV +G   DI++Y  LI  +CK   +     LL E+ ++GF  D  T++ +
Sbjct: 161 DEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTV 220

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGLCKAG ++ A   ++   ++        YN ++    + G +D AI +   M     
Sbjct: 221 IDGLCKAGRLRDA---VDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKC 277

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TY++++   CK  RL  A +L    + + +        ++VDGL   G   +A +
Sbjct: 278 APDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALE 337

Query: 308 IQSKI 312
           +  +I
Sbjct: 338 LLEEI 342



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 140/345 (40%), Gaps = 71/345 (20%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T  +++  LC     D+A  +   +   G     +TY+ L+ GLCK  R
Sbjct: 65  MVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCER 124

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK----------------------- 97
           L  A  +++ + + G AP  +TY +I+    R R+                         
Sbjct: 125 LDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTA 184

Query: 98  ------------LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ----- 140
                        GLE+L  + R+G+T D   Y TVI    K GRL++A D  E+     
Sbjct: 185 LIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAP 244

Query: 141 ---------------------------MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
                                      MV D    D+V+Y TL++ +CK G+L+ AY L 
Sbjct: 245 TAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELF 304

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            +M       D  T T L+DGLC  G ++ A   LE + + G    +  YNC+VD   K 
Sbjct: 305 QQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKA 364

Query: 234 GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            ++  A  +         V ++ TY+ +V   C+A R   A + L
Sbjct: 365 NQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYL 409



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 129/268 (48%), Gaps = 37/268 (13%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P  + +N++I GLC+AGRLR A  + +++ D+ H P+ +TYT ++    + R+ +  +++
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMNDA-HPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 103 LSAMK-----------------------------------RKGYTFDGFGYCTVIAAFVK 127
           L  M                                     +G   +   Y  ++    K
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 121

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             RL EA   +E M   G    +V+YN++I  +C+  +++ A+  +++M  +G   D  T
Sbjct: 122 CERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIIT 181

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LI G CK+ ++      L  + + GF  ++  Y+ ++D L K G++  A+++FE M 
Sbjct: 182 YTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS 241

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + TY+S++   C+A  +  A +LL
Sbjct: 242 CAPTAITYNSLIGGYCRAGDMDEAIRLL 269


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 160/311 (51%), Gaps = 8/311 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++ G CK    D A+R  + L  +G  P+++++N++++ LC  GR   A  +
Sbjct: 249 PDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKL 308

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAF 125
           L  +   G  P+ +T+  ++   F  +K  LG  L +L  M + G+T +   +  +I  F
Sbjct: 309 LATMLRKGCLPSVVTFNILIN--FLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGF 366

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                +  A +Y+E MV+ G   DIV+YN L+   CK+GK++ A ++L ++  +G     
Sbjct: 367 CNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSL 426

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  +IDGL K G  + A   LE M   G   +L     +V  L ++GK+  A+  F  
Sbjct: 427 ISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHY 486

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++      ++F Y+S++  LCK+++   A   L   +  G +  ++    ++ G+ + G 
Sbjct: 487 LKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGL 546

Query: 302 RREAKKIQSKI 312
             +A K+ +++
Sbjct: 547 AEDASKLSNEL 557



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 139/295 (47%), Gaps = 7/295 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             ++N++++G CK+   + ALR+   L + G  P   TY+ ++  LC  G+L+ A  +L 
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRV---LDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
               S   P+ +T T ++    +       +++ + M+ KG   D   Y  +I  F K G
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL EA  +++++ + G Q D++S+N ++   C  G+   A  LL  M ++G      T  
Sbjct: 266 RLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFN 325

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           ILI+ LC+ G +  A   LE M K G   N  ++N ++        ID AI   E M  +
Sbjct: 326 ILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSR 385

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               D  TY+ ++  LCK  ++  A  +L      G      +   V+DGL   G
Sbjct: 386 GCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVG 440



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 133/304 (43%), Gaps = 39/304 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T  ++++  CK      A+++F  ++  G  P++VTYN+LIKG CK GRL  A   
Sbjct: 214 PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRF 273

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK+L   G  P+ I++  I++                                   +   
Sbjct: 274 LKKLPSYGCQPDVISHNMILR-----------------------------------SLCS 298

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A   +  M+  G    +V++N LIN  C++G L  A  +L+ M K G   +  +
Sbjct: 299 GGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRS 358

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LI G C    I  A  +LE M   G   ++  YN ++  L KDGK+D A+ +   + 
Sbjct: 359 FNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLS 418

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K       +Y++++  L K  +   A +LL      G++       +VV GL   G  R
Sbjct: 419 SKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVR 478

Query: 304 EAKK 307
           EA K
Sbjct: 479 EAMK 482



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 98/193 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP + +FN ++ G C  +  D A+     +   G  P++VTYNIL+  LCK G++  A  
Sbjct: 353 TPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVV 412

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL +L   G +P+ I+Y T++    +  K +L +E+L  M  KG   D     +V+    
Sbjct: 413 ILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLS 472

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G+++EA  +   +    ++ +   YN++I   CK  +   A   L +M  +G +  + 
Sbjct: 473 REGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEA 532

Query: 187 THTILIDGLCKAG 199
           T+T LI G+   G
Sbjct: 533 TYTTLIKGITYEG 545



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+L  LCK+   D+A+ +   L   G  P L++YN +I GL K G+   A  +
Sbjct: 389 PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVEL 448

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  P+ IT T+++    R  K +  ++    +KR     + F Y ++I    K
Sbjct: 449 LEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCK 508

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
             +   A D++  MV  G +    +Y TLI     EG  E A  L +E+  +G 
Sbjct: 509 SQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGL 562



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 94/227 (41%), Gaps = 36/227 (15%)

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            RN + + G   L  M  KG + D      +I  F KIGR K A+  M  +   G  +D+
Sbjct: 90  IRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDV 149

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEME---------------------KQGFEC------ 183
            SYN LI+ YCK G++E A  +LD M                      KQ  +       
Sbjct: 150 TSYNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQ 209

Query: 184 -----DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
                D  T T+LID  CK   +  A      M   G   ++  YN ++    K G++D 
Sbjct: 210 SKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDE 269

Query: 239 AINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           AI   + +       D  +++ ++ +LC   R   A KLL + L+ G
Sbjct: 270 AIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKG 316



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 7/154 (4%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            ++ G L+E + ++E M   G   D+++   LI  +CK G+ + A  ++  +E+ G   D
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV-- 242
             ++ +LI G CK+G I+ A   L  ++++G   N   Y+ ++  L   GK+  A+ V  
Sbjct: 149 VTSYNVLISGYCKSGEIEEA---LRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 243 --FESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
              +S    D  T + ++   CK   +  A KL 
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLF 239


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 162/343 (47%), Gaps = 43/343 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P T T+  +L  LC+ +  + A  +FRG+   G  P + +Y+ILI GLC+  +
Sbjct: 43  MLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L E+ D GH PN +TY +++    +  K K  +++ S M  +G   DG  Y  
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K G + EA    E+M+  G    + +YN+L++ + ++G+      L  +M +QG
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARLHLEY----------------------------- 210
              + +T   L+DG CK G+ ++  RL LE                              
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQ 282

Query: 211 -----MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                M + G   ++ +YN ++D   K G +DHAI +F  +       D+F+YS+++  L
Sbjct: 283 RLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCL 342

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           C+A ++ +A  +    + +G     +   AVV  L    CR E
Sbjct: 343 CRAGKVGAAFVVFKDMIANG----SAPDAAVVIPLVIGLCRGE 381



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 138/283 (48%), Gaps = 4/283 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI G   P   T+  +L+GLCK      A+ +F  +   G  P+ V YN+LI G  K G 
Sbjct: 113 MIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGD 172

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +E+ + G  P   TY +++    R  ++     +   M R+G   + F +  
Sbjct: 173 MGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNN 232

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F K+G + EA     +M + G   D+VSYNTLI   C +GK   A  LL EM + G
Sbjct: 233 LLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSG 292

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  ++ ILIDG  K+G +  A      + K G + +  +Y+ I+D L + GK+  A 
Sbjct: 293 VGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAF 352

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
            VF+ M       D+     +V  LC+ +RL  + +L  + +K
Sbjct: 353 VVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 148/307 (48%), Gaps = 4/307 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T ++N +L  L K+   D+    +  +   G VP   TY  L++ LC+A R   AR + +
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G +PN  +Y+ ++    R +K     E+L+ M   G+  +   Y ++++   K+G
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +LKEA D   +MV  G   D V YN LI+ + K+G +  AY L +EM ++G     +T+ 
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            L+ G  + G     +   + M + G   N+  +N ++D   K G +  A  +F  M   
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D  +Y++++  +C   +   A +LL   ++SGV     +   ++DG   SG    A
Sbjct: 257 GCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHA 316

Query: 306 KKIQSKI 312
            K+  +I
Sbjct: 317 IKLFYEI 323



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 7/204 (3%)

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           Y      Y  ++    K GR          M+  G   +  +Y  L+   C+  + E A 
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +   M  QG   + ++++ILI GLC+   +  A   L  M   G   N+  Y  ++  L
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            K GK+  A+++F  M  +    D   Y+ ++    K   +  A +L    L+ G     
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192

Query: 287 SAQKAVVDGLRHSGCRREAKKIQS 310
               +++ G    G   E  ++QS
Sbjct: 193 FTYNSLLSGFSRKG---EFGRVQS 213



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 40/88 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P  A    ++ GLC+      +  +F+ + K   VP +  YN+L+  LCKA R
Sbjct: 358 MIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKR 417

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
                 I  EL + G +P+      I++
Sbjct: 418 SDDVCEIFHELTERGFSPDVEISKVILE 445


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 156/316 (49%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L GLCK+R  D A  +FR + +    P++ ++NILI G C+ G ++ A 
Sbjct: 223 LKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAV 282

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              KE+      P+ ++++ ++    R  +       L  MK  G   DG  Y  VI  F
Sbjct: 283 KFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGF 342

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA    ++MV  G   D+V+YNTL+N  CK+ +L  A  LL+EME++G   D 
Sbjct: 343 CRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDL 402

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T T LI G C+ GN + A    + + +     ++  YN ++D + + G +  A  +++ 
Sbjct: 403 CTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDD 462

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  ++      TYS ++ + C+  ++  A   L   +K G         +++ G   SG 
Sbjct: 463 MHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGN 522

Query: 302 RREAKKIQSKIRMAKI 317
            ++ ++   K+R   +
Sbjct: 523 VKKGQQFLQKMRQDNV 538



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 159/311 (51%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + +++ G C+      ALR+   +   G +P++VTYN L+ GLCK  RL  A 
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAE 387

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+ + G  P+  T+TT++    R   ++  L++   + R+    D   Y ++I   
Sbjct: 388 KLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGM 447

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L +A +  + M    +  + ++Y+ LI+ +C++G++E A+  LDEM K+G   + 
Sbjct: 448 CRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNI 507

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I G C++GN+K  +  L+ M +     +L  +N ++    K+  +  A NVF  
Sbjct: 508 RTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNI 567

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME +    D+ TY+ +++   +   +  A ++      SG+   +    ++++G   +G 
Sbjct: 568 MEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGN 627

Query: 302 RREAKKIQSKI 312
            ++A ++  ++
Sbjct: 628 SKQAFQLHDEM 638



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 154/310 (49%), Gaps = 4/310 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM++  CK    D A  +   ++K    P++VT+N+LI    +AG +  A  ++  +
Sbjct: 159 TLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P  +TY +++K   ++R++    E+   M +     D   +  +I  F ++G +
Sbjct: 219 ANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           KEA  + ++M    V  D+VS++ LI L+ + G+++ A   L EM+  G   D   +T++
Sbjct: 279 KEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMV 338

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I G C+AG++  A    + M   G   ++  YN +++ L K  ++  A  +   ME    
Sbjct: 339 IGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGV 398

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  T+++++H  C+     +A +L  + L+  +R       +++DG+   G   +A +
Sbjct: 399 TPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANE 458

Query: 308 IQSKIRMAKI 317
           +   +   +I
Sbjct: 459 LWDDMHAREI 468



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 147/307 (47%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   +F+ ++    +    D+A    R ++  G VP+ V Y ++I G C+AG +  A 
Sbjct: 293 VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEAL 352

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P+ +TY T++    +  +     ++L+ M+ +G T D   + T+I  +
Sbjct: 353 RVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGY 412

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G  + A    + ++   ++ D+V+YN+LI+  C++G L  A  L D+M  +    + 
Sbjct: 413 CRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNH 472

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ILID  C+ G ++ A   L+ M K G   N+  YN I+    + G +       + 
Sbjct: 473 ITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQK 532

Query: 246 MEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M   + F    T+++++H   K + +  A  +     K  VR        +++G    G 
Sbjct: 533 MRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGN 592

Query: 302 RREAKKI 308
            ++A ++
Sbjct: 593 MQDAGRV 599



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 90/180 (50%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T++I+++  C+    ++A      + K G +P + TYN +IKG C++G ++  
Sbjct: 467 EILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKG 526

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           +  L+++      P+ IT+ T++    +         + + M+++    D   Y  +I  
Sbjct: 527 QQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIING 586

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F + G +++A    + M   G++ D  +Y +LIN +   G  + A+ L DEM  +GF  D
Sbjct: 587 FSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 120/277 (43%), Gaps = 4/277 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++    TP    F++++    ++R    A   FR L  H         N L+  L +AG 
Sbjct: 78  LLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGW 137

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+   + +  S    NA T   ++    +  ++     ++S M+++    D   +  
Sbjct: 138 PHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNV 197

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  + G +  A   ++ M   G++  IV+YN+++   CK  + + A  +   M++  
Sbjct: 198 LIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCS 257

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  +  ILI G C+ G +K A    + M       ++ +++C++    + G++DHA 
Sbjct: 258 VAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAG 317

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
                M+    V D   Y+ ++   C+A  +  A ++
Sbjct: 318 AYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 150/290 (51%), Gaps = 4/290 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TF+I+++ LCK+     A  M   + K G +P++VTY+ L+ G C    
Sbjct: 260 MVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNE 319

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +   +   G AP+A +Y  ++    + +     L +   M  KG   D   Y +
Sbjct: 320 VNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNS 379

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+GR+  A   +++M  +G+  DI++YN+LI++ CK   ++ A  L+ +++ QG
Sbjct: 380 LIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQG 439

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +   YT+ ILIDGLCK G +K A+   + +   G+  N   YN +++ L K+G  + A 
Sbjct: 440 IQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAE 499

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            +   ME    + D+ TY +++  L +      A KLL   +  G+ + K
Sbjct: 500 VLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLLLCK 549



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 6/313 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   TFN ++ G C       A  +F  +      P++ T++IL+  LCK G 
Sbjct: 225 MITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGN 284

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A+ +L  +   G  P+ +TY+++M   C  N   K    + S M R G       Y 
Sbjct: 285 ITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNK-AKHVFSTMSRLGVAPHAHSYN 343

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    KI  + EA    ++M   G+  D V+YN+LI+  CK G++  A+ L+DEM   
Sbjct: 344 IMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNN 403

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T+  LID LCK  +I  A   ++ +   G   ++  YN ++D L K G++ +A
Sbjct: 404 GIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNA 463

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +VF+ + +K    +++TY+ M++ LCK      A  LL     +G+       + ++  
Sbjct: 464 QDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRA 523

Query: 296 LRHSGCRREAKKI 308
           L       +A+K+
Sbjct: 524 LFRKDENEKAEKL 536



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 143/279 (51%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TFN ++NG+C N     AL     +   GF  + V+Y  LI GLCK G  R A  +
Sbjct: 127 PTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQM 186

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++       + + Y  I+    +++      ++ S M  K  + D   + ++I  F  
Sbjct: 187 LKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCV 246

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LKEA     +MV   +  D+ +++ L++  CK+G +  A  +L  M KQG   D  T
Sbjct: 247 VGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVT 306

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+DG C    +  A+     M+++G   +  +YN +++ LGK   +D A+++F+ M 
Sbjct: 307 YSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMC 366

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            K    D+ TY+S++  LCK  R+  A +L+     +G+
Sbjct: 367 CKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGI 405



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 149/307 (48%), Gaps = 8/307 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI++N LCK++   +A +++  +      P++VT+N LI G C  G+L+ A  +  E+ 
Sbjct: 202 YNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMV 261

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                P+  T++ ++    ++        +L+ M ++G   D   Y +++  +  +  + 
Sbjct: 262 LKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVN 321

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A      M   GV     SYN +IN   K   ++ A  L  EM  +G   D  T+  LI
Sbjct: 322 KAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLI 381

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS- 251
           DGLCK G I  A   ++ M+  G  +++  YN ++D L K+  ID AI + +  ++KD  
Sbjct: 382 DGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVK--KIKDQG 439

Query: 252 -----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
                +TY+ ++  LCK  RL +A  +    L  G  +       +++GL   G   EA+
Sbjct: 440 IQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAE 499

Query: 307 KIQSKIR 313
            + SK+ 
Sbjct: 500 VLLSKME 506



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 132/297 (44%), Gaps = 8/297 (2%)

Query: 7   TPCTATFNIMLNGLCK---NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           TP    FN +L  + K   N YT  A+ +   L+  G  P +VT+NIL+   C  G +  
Sbjct: 54  TPSIVEFNKILGSIVKANNNHYT-TAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTF 112

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  I  ++   G+ P  IT+ T++     N K K  L     +   G+  D   Y T+I 
Sbjct: 113 AFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLIN 172

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              KIG  + A   ++++    V  D+V YN +IN  CK+  +  AY L  EM  +    
Sbjct: 173 GLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISP 232

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T   LI G C  G +K A      M     + ++  ++ +VD L KDG I  A N+ 
Sbjct: 233 DVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNML 292

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             M     + D  TYSS++   C    +  A  +  +  + GV     +   +++GL
Sbjct: 293 AVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGL 349


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 141/294 (47%), Gaps = 4/294 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P   T+N +LNG CK      AL +F  L++ G  P ++TYNILI G C+ G L  AR
Sbjct: 1256 LLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEAR 1315

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + +E+G+ G  PN  TYT +MK     R   +  E    M  KG   D F Y T I A 
Sbjct: 1316 ILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAE 1375

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + +G +  A +  E ++ +G+  D V+YN LI+  CK G L+ A  L  +M   G + D 
Sbjct: 1376 LILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDC 1435

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             T+T LI   C+ G ++ AR     M   G   +   +  I+    + G +  A   F  
Sbjct: 1436 ITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRK 1495

Query: 246  MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            M  +    +  TY+ ++H LC+  R   AS      L+ G+   K     ++DG
Sbjct: 1496 MLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDG 1549



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 4/219 (1%)

Query: 29   ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
            A  +   L   G   + VTYNILI GLCK G L+ A+ +  ++  +G  P+ ITYT ++ 
Sbjct: 1384 AFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIH 1443

Query: 89   CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                    +   +I + M   G       +  +I A+ + G L  A  +  +M+ +GV+ 
Sbjct: 1444 AHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 1503

Query: 149  DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLH 207
            + ++YN LI+  C+ G+ + A     EM ++G   +KYT+T+LIDG CK GN + A R +
Sbjct: 1504 NEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFY 1563

Query: 208  LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
             E M++ G   +   +  ++   G DG + H I   +++
Sbjct: 1564 FE-MHQNGIHPDYLTHKALLK--GFDGHVHHTIEYLDNV 1599



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 143/337 (42%), Gaps = 57/337 (16%)

Query: 12   TFNIMLNGL----CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            T+N ++ GL    C  +  D  L M    +  G +P +VTYN +I GL ++G +  A+  
Sbjct: 1192 TYNPLITGLLARGCVKKVYDLQLEM----ENEGIMPTVVTYNAMIHGLLQSGLVEAAQVK 1247

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              E+   G  P+ ITY +++    +    K  L +   ++R G       Y  +I  + +
Sbjct: 1248 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCR 1307

Query: 128  IGRLKE-----------------------------------ATDYMEQMVTDGVQLDIVS 152
            +G L+E                                   A ++ ++M++ G+Q D  +
Sbjct: 1308 LGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFA 1367

Query: 153  YNTLINLYCKE---GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
            YNT I   C E   G +  A+ L + +  +G   D  T+ ILI GLCK GN+K A+    
Sbjct: 1368 YNTRI---CAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQM 1424

Query: 210  YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAK 265
             M   G   +   Y C++    + G +  A  +F +M     +  + T++ ++H  C+  
Sbjct: 1425 KMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRG 1484

Query: 266  RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             L SA       L+ GV       +   + L H+ CR
Sbjct: 1485 NLYSAYGWFRKMLEEGVE----PNEITYNVLIHALCR 1517



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 3/209 (1%)

Query: 40   GFVPELVTYNILIKGLCKAGRLRTARWILKELGD--SGHAPNAITYTTIMKCCFRNRKYK 97
            G  P +VTYN L+    K GR      +LKE+    SG  PN +TY  ++    R    +
Sbjct: 1114 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 1173

Query: 98   LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
               E++  M R       F Y  +I   +  G +K+  D   +M  +G+   +V+YN +I
Sbjct: 1174 EAAELVEGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMI 1232

Query: 158  NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
            +   + G +EAA +   EM   G   D  T+  L++G CKAGN+K A L    + + G  
Sbjct: 1233 HGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLA 1292

Query: 218  SNLEAYNCIVDRLGKDGKIDHAINVFESM 246
              +  YN ++D   + G ++ A  + E M
Sbjct: 1293 PTVLTYNILIDGYCRLGDLEEARILKEEM 1321



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 35/276 (12%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P   T+NI+++G C+    + A  +   + + G +P + TY IL+KG      L  AR
Sbjct: 1291 LAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAR 1350

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
                E+   G  P+   Y T +             E+   +  +G + D   Y  +I   
Sbjct: 1351 EFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGL 1410

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL-------------------------- 159
             K G LK+A +   +MV++G+Q D ++Y  LI+                           
Sbjct: 1411 CKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSA 1470

Query: 160  ---------YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                     YC+ G L +AY    +M ++G E ++ T+ +LI  LC+ G  + A  H   
Sbjct: 1471 VTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHE 1530

Query: 211  MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            M + G  +N   Y  ++D   K G  + A+  +  M
Sbjct: 1531 MLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEM 1566



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 73/157 (46%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+   L P   T+  +++  C+      A ++F  +   G +P  VT+ ++I   C+ G 
Sbjct: 1426 MVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGN 1485

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L +A    +++ + G  PN ITY  ++    R  + +L       M  +G   + + Y  
Sbjct: 1486 LYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTL 1545

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
            +I    K+G  ++A  +  +M  +G+  D +++  L+
Sbjct: 1546 LIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALL 1582



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 42/215 (19%)

Query: 139  EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLC 196
            E+M+  G++  IV+YNTL++ + KEG+ +   +LL EME +G  C  +  T+ ++I GL 
Sbjct: 1108 EEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLT 1167

Query: 197  KAGNIKGA-----------------------------------RLHLEYMNKIGFDSNLE 221
            + G+++ A                                    L LE  N+ G    + 
Sbjct: 1168 RKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENE-GIMPTVV 1226

Query: 222  AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
             YN ++  L + G ++ A   F  M     + D  TY+S+++  CKA  L  A  L    
Sbjct: 1227 TYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDL 1286

Query: 278  LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             ++G+         ++DG    G   EA+ ++ ++
Sbjct: 1287 RRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEM 1321



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+   + P   T+N++++ LC+   T  A   F  + + G V    TY +LI G CK G 
Sbjct: 1496 MLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGN 1555

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMK 88
               A     E+  +G  P+ +T+  ++K
Sbjct: 1556 WEDAMRFYFEMHQNGIHPDYLTHKALLK 1583


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 154/321 (47%), Gaps = 21/321 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P T+T++ ++  LC     + A ++F+ ++++G  P++  Y  LI   CKAG 
Sbjct: 213 MMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGF 272

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR    E+   G APN +TYT ++    ++RK     E+   M  KG T +   Y  
Sbjct: 273 IEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTA 332

Query: 121 VIAAFVKIGRLKEATDYMEQM---------------VTDGV--QLDIVSYNTLINLYCKE 163
           +I    K G++++A+   + M               V DG   + ++ +Y  L++  CK 
Sbjct: 333 LIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKA 392

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
            +++ A  LL  M  +G E +   +  LIDG CKAG +  A+     M + G+D N+  Y
Sbjct: 393 YQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTY 452

Query: 224 NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           + ++DRL KD ++D A+ V   M       +   Y+ M+  LCK  +   A KL++   +
Sbjct: 453 SSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEE 512

Query: 280 SGVRILKSAQKAVVDGLRHSG 300
            G         A++DG   SG
Sbjct: 513 KGCNPNVVTYTAMIDGFGKSG 533



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 148/334 (44%), Gaps = 26/334 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    FN +++  C++     A ++ + + + G  P  V YNILI G+C +  
Sbjct: 103 MITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEE 162

Query: 61  -----LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
                L  A     E+ ++G   N +  +   +C     K++    ++  M  KG+  D 
Sbjct: 163 PGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDT 222

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  VI       ++++A    ++M  +G+  D+  Y TLI+ +CK G +E A    DE
Sbjct: 223 STYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDE 282

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           ME+ G   +  T+T LI    K+  +  A    E M   G   N+  Y  ++D L K GK
Sbjct: 283 MERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGK 342

Query: 236 IDHAINVF-----ESMEVKD----------------SFTYSSMVHNLCKAKRLPSASKLL 274
           I+ A  ++     E++E+ D                 FTY ++V  LCKA ++  A  LL
Sbjct: 343 IEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLL 402

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            S    G         A++DG   +G   EA+++
Sbjct: 403 KSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEV 436



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 142/300 (47%), Gaps = 26/300 (8%)

Query: 8   PCTATFNIMLNGLCKNRYT-----DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           P    +NI++ G+C +        D A + +  + + G V   V  +   + LC  G+  
Sbjct: 145 PGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFE 204

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +++E+   G  P+  TY+ ++       K +   ++   MKR G   D + Y T+I
Sbjct: 205 KAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLI 264

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            +F K G +++A ++ ++M  DG   ++V+Y  LI+ Y K  K+  A  + + M  +G  
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCT 324

Query: 183 CDKYTHTILIDGLCKAGNIKGAR-----------------LHLEYMNKIGFDSNLEAYNC 225
            +  T+T LIDGLCKAG I+ A                  +H   ++    + N+  Y  
Sbjct: 325 PNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGA 384

Query: 226 IVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +VD L K  ++  A ++ +SM V+    +   Y +++   CKA +L  A ++  + L+ G
Sbjct: 385 LVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECG 444



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 17/264 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-----------------P 43
           M+    TP   T+  +++GLCK    + A ++++ ++K                     P
Sbjct: 318 MLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEP 377

Query: 44  ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103
            + TY  L+ GLCKA +++ AR +LK +   G  PN + Y  ++  C +  K     E+ 
Sbjct: 378 NVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVF 437

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
           + M   GY  + + Y ++I    K  RL  A   + +M+ +    ++V Y  +I+  CK 
Sbjct: 438 TTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKV 497

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
           GK + AY L+  ME++G   +  T+T +IDG  K+G ++     L+ M+  G   N   Y
Sbjct: 498 GKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTY 557

Query: 224 NCIVDRLGKDGKIDHAINVFESME 247
             +++     G +D A  + E M+
Sbjct: 558 RVLINHCCSTGLLDEAHKLLEEMK 581



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 141/341 (41%), Gaps = 47/341 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T     + LCK+     AL +   L+K  FVP+ V Y  +I GLC+A     A   L  +
Sbjct: 12  TLGCFAHSLCKSGKWREALSL---LEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRM 68

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             S   PN +TY  ++  C    K      ILS M  +G       + +++ A+ + G  
Sbjct: 69  RASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDY 128

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKE---------------------------- 163
             A   +++MV  G Q   V YN LI   C                              
Sbjct: 129 AYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKV 188

Query: 164 ------------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                       GK E AY ++ EM  +GF  D  T++ +I  LC A  ++ A    + M
Sbjct: 189 NISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEM 248

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            + G   ++  Y  ++D   K G I+ A N F+ ME      +  TY++++H   K++++
Sbjct: 249 KRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKV 308

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             A+++    L  G         A++DGL  +G   +A +I
Sbjct: 309 SKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQI 349



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 144/336 (42%), Gaps = 45/336 (13%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +  P T  +  M++GLC+    + A+     ++    +P ++TY IL+ G     +L   
Sbjct: 37  EFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRC 96

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-------YTFDGFG 117
           + IL  +   G  P+   + +++    R+  Y    ++L  M + G       Y     G
Sbjct: 97  KRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGG 156

Query: 118 YCTV-----------------------------IAAFVK----IGRLKEATDYMEQMVTD 144
            C+                              I+ F +    IG+ ++A + + +M++ 
Sbjct: 157 ICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSK 216

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G   D  +Y+ +I   C   K+E A+ L  EM++ G   D Y +T LID  CKAG I+ A
Sbjct: 217 GFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQA 276

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
           R   + M + G   N+  Y  ++    K  K+  A  V+E M  K    +  TY++++  
Sbjct: 277 RNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDG 336

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILK-SAQKAVVDG 295
           LCKA ++  AS++     K  V I        VVDG
Sbjct: 337 LCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDG 372



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 136/283 (48%), Gaps = 14/283 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++G CK    D A  +F  + + G+ P + TY+ LI  L K  RL  A  +
Sbjct: 412 PNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKV 471

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++ ++  APN + YT ++    +  K     +++  M+ KG   +   Y  +I  F K
Sbjct: 472 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGK 531

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+++  + ++QM + G   + V+Y  LIN  C  G L+ A+ LL+EM++  +      
Sbjct: 532 SGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAG 591

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL---EAYNCIVDRLGKDGKIDHAINVFE 244
           +  +I+G  +      A L+L +  +I  + ++     Y  ++D   K G+++ A+ + E
Sbjct: 592 YRKVIEGFNREFI---ASLYLSF--EISENDSVPVAPVYRVLIDNFIKAGRLEIALELNE 646

Query: 245 SMEVKDSFTYS------SMVHNLCKAKRLPSASKLLLSCLKSG 281
            +     F+ +      +++ NL  A +   A +L    +  G
Sbjct: 647 ELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISRG 689



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 7/147 (4%)

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           M T G ++D  +     +  CK GK   A  LL   EK+ F  D   +T +I GLC+A  
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLL---EKEEFVPDTVLYTKMISGLCEASL 57

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT----YSS 256
            + A   L  M       N+  Y  ++       K+     +   M  +  +     ++S
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +VH  C++     A KLL   ++ G +
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQ 144


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++GLCK++  + A   +  +   G  P+++TY+ LI G C AG+L  A  +
Sbjct: 270 PDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSL 329

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+  TYT ++    +  K K    +L  M ++G   +   Y T++  +  
Sbjct: 330 LNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCL 389

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G +  A      MV   V   + SYN +IN  CK   ++ A  LL EM  +    +  T
Sbjct: 390 VGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVT 449

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LIDGLCK+G I  A   ++ ++  G  +++  Y  ++D L K+  +D AI +F  M+
Sbjct: 450 YNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMK 509

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    + +TY++++  LCK  RL +A KL    L  G  I       ++ GL   G   
Sbjct: 510 ERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLD 569

Query: 304 EAKKIQSKIR 313
           EA  ++SK+ 
Sbjct: 570 EALAMKSKME 579



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 155/333 (46%), Gaps = 39/333 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    F  +L  L K ++   A+ + + ++  G  P+LVT +ILI   C  G++  +  
Sbjct: 129 TPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFS 188

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++   G+ PN I  TT+MK      + K  L     +  +G+  +   Y T++    
Sbjct: 189 VLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLC 248

Query: 127 KIGR-----------------------------------LKEATDYMEQMVTDGVQLDIV 151
           KIG                                    + EA D+  +M + G+  D++
Sbjct: 249 KIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVI 308

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y+TLI  +C  G+L  A+ LL+EM  +    D YT+TILID LCK G +K A+  L  M
Sbjct: 309 TYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVM 368

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDSF-TYSSMVHNLCKAKRL 267
            K G   N+  Y+ ++D     G++ +A  +F +M   EV  S  +Y+ M++ LCK K +
Sbjct: 369 TKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSV 428

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             A  LL   L   V        +++DGL  SG
Sbjct: 429 DEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSG 461



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T     ++ GLC       +L     +   GF    V+Y  L+ GLCK G  R A  +
Sbjct: 200 PNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKL 259

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ + D    P+ + Y TI+    +++      +  + M  +G   D   Y T+I  F  
Sbjct: 260 LRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCL 319

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L  A   + +M    +  D+ +Y  LI+  CKEGKL+ A  LL  M K+G + +  T
Sbjct: 320 AGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVT 379

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           ++ L+DG C  G +  A+     M +   + ++ +YN +++ L K   +D A+N+   M 
Sbjct: 380 YSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREML 439

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
               V ++ TY+S++  LCK+ R+ SA  L+
Sbjct: 440 HKNVVPNTVTYNSLIDGLCKSGRITSALDLM 470



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 112/214 (52%), Gaps = 1/214 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   ++NIM+NGLCK +  D A+ + R +     VP  VTYN LI GLCK+GR
Sbjct: 403 MVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGR 462

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A  ++KEL   G   + ITYT+++    +N+     + +   MK +G   + + Y  
Sbjct: 463 ITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTA 522

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  RLK A    + ++  G  +D+ +YN +I   CKEG L+ A  +  +ME  G
Sbjct: 523 LIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNG 582

Query: 181 FECDKYTHTILIDGLC-KAGNIKGARLHLEYMNK 213
              D  T  I+I  L  K  N K  +L  E + K
Sbjct: 583 CIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAK 616



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   ++ P   T+ I+++ LCK      A  +   + K G  P +VTY+ L+ G C  G 
Sbjct: 333 MTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGE 392

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ I   +  +   P+  +Y  ++    + +     + +L  M  K    +   Y +
Sbjct: 393 VHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNS 452

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+  A D M+++   G   D+++Y +L++  CK   L+ A  L  +M+++G
Sbjct: 453 LIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERG 512

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +KYT+T LIDGLCK   +K A+   +++   G   ++  YN ++  L K+G +D A+
Sbjct: 513 IQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEAL 572

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME    + D+ T+  ++ +L +      A KLL   +  G+
Sbjct: 573 AMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 112/277 (40%), Gaps = 20/277 (7%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK----CCFR--- 92
           G VP LVT +ILI  L   G++  +  +L ++   G+ PN+IT TT+MK    C  +   
Sbjct: 6   GIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMKGETRCAIKLPR 65

Query: 93  --NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT--DGVQL 148
               +    L  LS+                   F    +     D +   V+  +G+ L
Sbjct: 66  MIEDRSTRPLMWLSSSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQFNGMLL 125

Query: 149 -----DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
                 I+ +  ++    K      A  L  +ME +G E D  T +ILI+  C  G +  
Sbjct: 126 MRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAF 185

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVH 259
           +   L  + K+G+  N      ++  L   G++  +++  + +  +    +  +Y ++++
Sbjct: 186 SFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLN 245

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            LCK      A KLL        R        ++DGL
Sbjct: 246 GLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGL 282


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 150/300 (50%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+N ++N LC       AL++F  ++ HG +    TYN +IKGLC  G 
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 423

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +++   G  P  +TY T++              +L  MK  G   D + Y  
Sbjct: 424 IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 483

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F K G+L+ A+ Y ++MV  G+  + VSY  LI+ + K+GK++ A  LL  ME+ G
Sbjct: 484 LVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMG 543

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++  +I+GL K      A    + M + G   N+  Y  ++D L ++G+   A 
Sbjct: 544 CNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAF 603

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  ME    + + +TYSS+++ LC+  +   A  LL    + G+   +    +++DG 
Sbjct: 604 KIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGF 663



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 154/312 (49%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+ + +  LC   + + A+ +   ++K G  P + TY  LI GL + G+
Sbjct: 294 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGK 353

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++   G  PN +TY  ++       ++   L+I   M+  G   +   Y  
Sbjct: 354 LEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNE 413

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G +++A    E+M+  G    +V+YNTLIN Y  +G +  A  LLD M++ G
Sbjct: 414 IIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENG 473

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D++T+  L+ G  K G ++ A  + + M + G + N  +Y  ++D   KDGK+D A+
Sbjct: 474 CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIAL 533

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + ME      +  +Y+++++ L K  R   A K+    ++ G+         ++DGL
Sbjct: 534 SLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGL 593

Query: 297 RHSGCRREAKKI 308
             +G  + A KI
Sbjct: 594 CRNGRTQFAFKI 605



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 124/239 (51%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG       +NA R+   ++++G  P+  TYN L+ G  K G+L +A + 
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 500

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ + G  PN ++YT ++    ++ K  + L +L  M+  G   +   Y  VI    K
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSK 560

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R  EA    ++MV  G+  ++++Y TLI+  C+ G+ + A+ +  +MEK+    + YT
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 620

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++ LI GLC+ G    A + L+ M + G   +   +  ++D     G+IDHA  +   M
Sbjct: 621 YSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 679



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 137/299 (45%), Gaps = 4/299 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L  L K    + A  +++ +   G  P L+T+N LI  L K G++R A  IL ++  
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
              +P+  TYT+++    RNR   L   +   M ++G   +   Y T+I      GR+ E
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 286

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A D +E+M+  G++  + +Y   I   C     E A  L+  M+K+G   +  T+T LI 
Sbjct: 287 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           GL + G ++ A      M K G   N   YN +++ L   G+   A+ +F  ME    + 
Sbjct: 347 GLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 406

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           ++ TY+ ++  LC    +  A  L    LK G          +++G    G    A ++
Sbjct: 407 NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARL 465



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 145/339 (42%), Gaps = 39/339 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN ++N L K      A  +   + ++   P++ TY  LI G C+   
Sbjct: 189 MLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRN 248

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTF-- 113
           L  A  +   +   G  PN++TY+T++       +    L++L  M  KG     YT+  
Sbjct: 249 LDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTL 308

Query: 114 ----------------------------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                                       +   Y  +I+   ++G+L+ A     +M+ +G
Sbjct: 309 PITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEG 368

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  + V+YN LIN  C  G+   A  +   ME  G   +  T+  +I GLC  G+I+ A 
Sbjct: 369 LVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM 428

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
           +  E M K+G    +  YN +++     G +++A  + + M+      D +TY+ +V   
Sbjct: 429 VLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGF 488

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            K  +L SAS      ++ G+     +  A++DG    G
Sbjct: 489 SKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 105/195 (53%), Gaps = 1/195 (0%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   ++  +++G  K+   D AL + + +++ G  P + +YN +I GL K  R  
Sbjct: 507 CG-LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFS 565

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  I  ++ + G  PN ITYTT++    RN + +   +I   M+++    + + Y ++I
Sbjct: 566 EAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI 625

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               + G+  EA   +++M   G+  D V++ +LI+ +   G+++ A+LLL  M   G +
Sbjct: 626 YGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCK 685

Query: 183 CDKYTHTILIDGLCK 197
            +  T+++L+ GL K
Sbjct: 686 PNYRTYSVLLKGLQK 700



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 4/232 (1%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D   AP       ++K C    + +   + L+ +   G+ F  +   T++    K   ++
Sbjct: 121 DRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVE 180

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM+  G+Q  ++++NTLIN+  K+GK+  A L+L ++ +     D +T+T LI
Sbjct: 181 GARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLI 240

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            G C+  N+  A    + M K G D N   Y+ +++ L  +G++D A+++ E M  K   
Sbjct: 241 LGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIE 300

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
              +TY+  +  LC  +    A +L+    K G R       A++ GL   G
Sbjct: 301 PTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 352



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
            L+E+   GF    Y+   L+  L K   ++GAR   + M   G   +L  +N +++ L 
Sbjct: 150 FLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILS 209

Query: 232 KDGKIDHA----INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
           K GK+  A      +F+     D FTY+S++   C+ + L  A  +    +K G      
Sbjct: 210 KKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSV 269

Query: 288 AQKAVVDGLRHSGCRREA 305
               +++GL + G   EA
Sbjct: 270 TYSTLINGLCNEGRVDEA 287


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 167/366 (45%), Gaps = 52/366 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---------------- 44
           MI     P   TF I+L GLC++   + A ++   +++ G VP+                
Sbjct: 33  MIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKD 92

Query: 45  -------------------LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                              +VTY  ++ GLCKA R R A  +L E+ D G +PN  TY  
Sbjct: 93  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNV 152

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           I++     RK     ++L  M  +GY  D   Y + I    K  R+ EA  ++ +M    
Sbjct: 153 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---P 209

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V  D+VSY T+IN  CK G L++A  +LD M  +G   D  T++ LIDG CK G ++ A 
Sbjct: 210 VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAM 269

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
             L+ M K+G   N+ AYN ++  L + G I  A ++   ME      D  +Y++ +  L
Sbjct: 270 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 329

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVV----------DGLRHSGCRREAKKIQSK 311
           CKA+R+  A  +    ++ G     S+   ++          DGL   G   EA  + SK
Sbjct: 330 CKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSK 389

Query: 312 IRMAKI 317
           +   KI
Sbjct: 390 VLDEKI 395



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 153/323 (47%), Gaps = 18/323 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   ++  ++NGLCK+   D+A RM   +   G  P++VTY+ LI G CK G +  A 
Sbjct: 210 VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAM 269

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +   G  PN + Y +++    R        ++L  M+R+G+T D   Y   I   
Sbjct: 270 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 329

Query: 126 VKIGRLKEATDYMEQMVTDGVQ----------LDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            K  R+K+A    ++MV  G            +DI+ Y  L++  CK G+ + A  L  +
Sbjct: 330 CKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSK 389

Query: 176 -MEKQGFECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            ++++  E D + + +++D  CK   I K  ++H + + K     N+  +N +V  L  D
Sbjct: 390 VLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC--CNVVTWNILVHGLCVD 447

Query: 234 GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            ++  A  +  +M     + D  TY ++V  +CK  +  +A +L    +K G        
Sbjct: 448 DRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTY 507

Query: 290 KAVVDGLRHSGCRREAKKIQSKI 312
            A++ GL H     EA  + +K+
Sbjct: 508 SALITGLVHENMAEEAYLLFTKL 530



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 139/293 (47%), Gaps = 7/293 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +L  L +    D A  +F+ +      P+  T+ IL++GLC++ +L  AR +L  +
Sbjct: 9   TYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRM 68

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+   Y  ++    + + +    + L+ M +         Y  ++    K  R 
Sbjct: 69  KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERT 128

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A   +++M   G   +I +YN ++   C+E KL+ A  +L+EM  +G+  D  T+   
Sbjct: 129 RDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSF 188

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I GLCK   +  AR   +++ ++    ++ +Y  +++ L K G +D A  + + M     
Sbjct: 189 IKGLCKCDRVDEAR---KFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGC 245

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             D  TYSS++   CK   +  A  LL S LK G R    A  +++  L   G
Sbjct: 246 TPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLG 298



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 127/262 (48%), Gaps = 1/262 (0%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   + TYN L+  L +  R   A  + +E+ D    P+A T+  +++   R+ + +  
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
            ++L  MK  G   D   Y  +I+ + K     +A  ++ +MV +     +V+Y  +++ 
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CK  +   A  LLDEM  +G   + YT+ ++++GLC+   +  A+  LE M   G+  +
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEV-KDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           +  YN  +  L K  ++D A      M V  D  +Y+++++ LCK+  L SAS++L    
Sbjct: 182 VVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS 241

Query: 279 KSGVRILKSAQKAVVDGLRHSG 300
             G         +++DG    G
Sbjct: 242 NRGCTPDVVTYSSLIDGFCKGG 263



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 36/184 (19%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N+ML+  CK R  D AL++ + + +      +VT+NIL+ GLC   RL  A  +
Sbjct: 398 PDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWNILVHGLCVDDRLSDAETM 456

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  + D G  P+ +TY                                    T++ A  K
Sbjct: 457 LLTMVDEGFIPDFVTYG-----------------------------------TLVDAMCK 481

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+   A +  E+ V  G   D+V+Y+ LI     E   E AYLL  ++ ++ +  D  T
Sbjct: 482 CGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKT 541

Query: 188 HTIL 191
             +L
Sbjct: 542 LGLL 545



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  +++ +CK   +  AL +F    K G VP++VTY+ LI GL     
Sbjct: 460 MVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENM 519

Query: 61  LRTARWILKELGDSGHAPNAIT 82
              A  +  +L +    P+  T
Sbjct: 520 AEEAYLLFTKLVERRWVPDDKT 541



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
           +G++ N+  YN ++ +L ++ + D A  VF+ M  K    D+FT++ ++  LC++ +L  
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEK 60

Query: 270 ASKLL 274
           A KLL
Sbjct: 61  ARKLL 65


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++  CK R    A  +   + + G   +  T N L+  LCK  R   A 
Sbjct: 417 LAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAE 476

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+     G  P+ ++Y T+M   F+  K +  L +   M ++  T   + Y T+I   
Sbjct: 477 ELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGL 536

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             IG+L EA D + +++  G+  D  +YN +I+ YCKEG LE A+   ++M +  F+ D 
Sbjct: 537 CTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDV 596

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L++GLC  G ++ A    E   + G   ++  YN ++  L KDG +D A++ F  
Sbjct: 597 VTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFAD 656

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ME +    D+FTY+ ++  L +A R   A  +L    +SG
Sbjct: 657 MEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 153/308 (49%), Gaps = 10/308 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NI++ GLC+    + AL   + + + G  P+++TYN LI   CKA  +  A  ++ E+
Sbjct: 388 THNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEM 447

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG   +  T  T++    + ++Y+   E+L +  ++G+  D   Y TV+AA+ K  + 
Sbjct: 448 VRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKP 507

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A    ++M    +   I +YNTLI   C  GKL  A   L+E+ K+G   D  T+ I+
Sbjct: 508 EPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNII 567

Query: 192 IDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           I   CK G+++ A    ++ NK+    F  ++   N +++ L   GK++ AI +FES   
Sbjct: 568 IHAYCKEGDLEKA---FQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAE 624

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           K    D  TY++++  LCK   + +A          G++        V+  L  +G   E
Sbjct: 625 KGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEE 684

Query: 305 AKKIQSKI 312
           A+ +  K+
Sbjct: 685 AQNMLHKL 692



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 42/320 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDN--ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           G + P     N +L+ L ++  T    +L +FR L      P   T+N+L+   C  G L
Sbjct: 167 GHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTL 226

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A   L  +   G +P+ +TY T++K   R         +L+ MK++G       Y T+
Sbjct: 227 ADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTL 286

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME---- 177
           ++A+ ++G +K+AT+ +E M   G + D+ +YN L    C+ GK++ A+ L DEME    
Sbjct: 287 VSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSI 346

Query: 178 --------------------------------KQGFECDKYTHTILIDGLCKAGNIKGAR 205
                                            +G +    TH I++ GLC+ G ++ A 
Sbjct: 347 VSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEAL 406

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
             L+ M + G   ++  YN ++D   K   +  A  + + M       D+FT +++++NL
Sbjct: 407 GRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNL 466

Query: 262 CKAKRLPSASKLLLSCLKSG 281
           CK KR   A +LL S  + G
Sbjct: 467 CKEKRYEEAEELLRSPPQRG 486



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 141/327 (43%), Gaps = 40/327 (12%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T N +L  LCK +  + A  + R   + GFVP+ V+Y  ++    K  +   A ++  
Sbjct: 456 TFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWD 515

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+      P+  TY T++K      K    ++ L+ + +KG   D   Y  +I A+ K G
Sbjct: 516 EMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEG 575

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L++A  +  +M+ +  + D+V+ NTL+N  C  GKLE A  L +   ++G + D  T+ 
Sbjct: 576 DLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYN 635

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
            LI  LCK G++  A      M   G   +   YN ++  L + G+ + A N+   +   
Sbjct: 636 TLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDES 695

Query: 247 -------------------------EVK------------DSFTYSSMVHNLCKAKRLPS 269
                                    EVK            D  +Y+  V  LC   +L  
Sbjct: 696 GKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKE 755

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGL 296
           A  +L   ++ G+ +  S    +++GL
Sbjct: 756 AKAVLDEMMQKGMSVDSSTYITLMEGL 782



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 123/268 (45%), Gaps = 9/268 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   T+N ++ GLC       A+     L K G VP+  TYNI+I   CK G L  A 
Sbjct: 522 LTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAF 581

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++ ++   P+ +T  T+M     + K +  +++  +   KG   D   Y T+I A 
Sbjct: 582 QFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQAL 641

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +  A  +   M   G+Q D  +YN +++   + G+ E A  +L ++++ G   ++
Sbjct: 642 CKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSER 701

Query: 186 YTHTILIDGL--CKAGNIKGARLHLEY-MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           +++ ++       K G     +   E   N  G D   E+YN  V  L   G++  A  V
Sbjct: 702 FSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQ--ESYNKSVKELCVGGQLKEAKAV 759

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKR 266
            + M  K    DS TY +++  L K ++
Sbjct: 760 LDEMMQKGMSVDSSTYITLMEGLIKRQK 787



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 5/182 (2%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G L +A   +  M   G+  D+V+YNTL+  +C++G L  A  LL  M+K+G    + T+
Sbjct: 224 GTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATY 283

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             L+    + G IK A   +E M   GF+ +L  YN +   L + GK+D A  + + ME 
Sbjct: 284 NTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEH 343

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY+++V    K +R   A  LL      GV+        VV GL   G   
Sbjct: 344 LSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLE 403

Query: 304 EA 305
           EA
Sbjct: 404 EA 405


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 153/319 (47%), Gaps = 4/319 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   T+  +++G C+      A R+F  + +    P +V Y ILI+GLC   R
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESR 243

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + + + +SG  PN  TY T+M    +    K  LE+   M   G   +   +  
Sbjct: 244 ISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI 303

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K   +  A  ++  M + GV  +I  YN LI+ YCK G L  A  L  E+EK  
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T++ILI GLC    ++ A   L+ M K GF  N   YN ++D   K+G ++ AI
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   M  K    +  T+S+++   CKA ++ +A  L    +  G+     A  A++DG 
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 297 RHSGCRREAKKIQSKIRMA 315
              G  +EA ++  +++ A
Sbjct: 484 FKDGNTKEAFRLHKEMQEA 502



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 54/296 (18%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++G CK      AL +   ++KH  +P++ TY+ILIKGLC   R+  A 
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+   G  PNA+TY T++                             GYC      
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLID----------------------------GYC------ 414

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +++A +   QM   G++ +I++++TLI+ YCK GK+EAA  L  EM  +G   D 
Sbjct: 415 -KEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDV 473

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF- 243
             +T LIDG  K GN K A RLH E M + G   N+   +C++D L KDG+I  AI +F 
Sbjct: 474 VAYTALIDGHFKDGNTKEAFRLHKE-MQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 244 ----------------ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                            S+   +   Y++++  LC   R+  ASK       SG+R
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLR 588



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 7/305 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F +++    +    + AL ++    K   +P +   N+++ GL K GR  T   +  ++
Sbjct: 128 VFGVLIIAFSEMGLVEEALWVY---YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN +TY T++  C R   +     +   M  K        Y  +I       R+
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRI 244

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA      M   G+  ++ +YNT+++ YCK   ++ A  L  EM   G   +  T  IL
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGIL 304

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGLCK   +  AR  L  M   G   N+  YNC++D   K G +  A+++   +E    
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI 364

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + D FTYS ++  LC   R+  A  LL    K G          ++DG    G   +A +
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 308 IQSKI 312
           + S++
Sbjct: 425 VCSQM 429



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 139/320 (43%), Gaps = 56/320 (17%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T++I++ GLC     + A  + + ++K GF+P  VTYN LI G CK G +  A
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKA 422

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  ++ + G  PN IT++T++                             GYC     
Sbjct: 423 IEVCSQMTEKGIEPNIITFSTLID----------------------------GYC----- 449

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+++ A     +MV  G+  D+V+Y  LI+ + K+G  + A+ L  EM++ G   +
Sbjct: 450 --KAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPN 507

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---------------NLEAYNCIVDR 229
            +T + LIDGLCK G I  A + L ++ K G D+               N   Y  ++  
Sbjct: 508 VFTLSCLIDGLCKDGRISDA-IKL-FLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQG 565

Query: 230 LGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
           L  DG+I  A   F  M       D FT   ++    +A  L     L    LK G+   
Sbjct: 566 LCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPN 625

Query: 286 KSAQKAVVDGLRHSGCRREA 305
            S  + +  G   SG  + A
Sbjct: 626 SSVYRVLAKGYEESGYLKSA 645



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 15/197 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +  +++G  K+  T  A R+ + +Q+ G  P + T + LI GLCK GR
Sbjct: 464 MVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGR 523

Query: 61  LRTARWIL-------------KELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM 106
           +  A  +               EL  S  +PN + YT +++  C   R +K   +  S M
Sbjct: 524 ISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKAS-KFFSDM 582

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           +  G   D F    +I    +   L++       ++  G+  +   Y  L   Y + G L
Sbjct: 583 RCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYL 642

Query: 167 EAAYLLLDEMEKQGFEC 183
           ++A    +++   G  C
Sbjct: 643 KSALRCSEDLSGIGIGC 659


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 158/335 (47%), Gaps = 40/335 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    ++ +++GLCK R  D AL M   ++K    P+ +TYN+LI GLCK+G +  AR
Sbjct: 157 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAAR 216

Query: 66  WILKELGDSGHAPNAITY-----------------------TTIMKCCF----------- 91
               E+ ++G  P+  TY                       TTI  C             
Sbjct: 217 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDW 276

Query: 92  --RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             +N+K +  + ++  +   G T     Y  ++    K+GRL+EA D + ++V +G   D
Sbjct: 277 LAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 336

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +V+Y +LI+   KE +   AY L  EM  +G   D   +T LI  L + G I  A    +
Sbjct: 337 VVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYK 396

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            M   G   ++   + ++D L K G+I  A+ +F+SME +    +   YS+++H LCKA+
Sbjct: 397 TMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 456

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           ++  A ++L    K+           ++DGL  SG
Sbjct: 457 KMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 491



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 134/269 (49%), Gaps = 4/269 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP  AT+N +LNGLCK    + A+ + R +  +G  P++VTY  LI GL K  R   A  
Sbjct: 299 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 358

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + KE+   G A + + YT +++   +  K      +   M   G   D     T+I    
Sbjct: 359 LFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLS 418

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+  A    + M   G+  + V Y+ LI+  CK  K++ A  +L +M+K     D  
Sbjct: 419 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 478

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ ILIDGLCK+G+++ AR   + M + G   ++  YN ++    K G  D A  VF+ M
Sbjct: 479 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSAS 271
                  +  TY +++  LCK ++L  AS
Sbjct: 539 SSSRCSANVVTYGALISGLCKRRQLTKAS 567



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 148/342 (43%), Gaps = 40/342 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP  AT+N +LNGLCK    + A+ + R +  +G  P++VTY  LI GL K  R   A  
Sbjct: 18  TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 77

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + KE+   G A + + YT +++   +  K      +   M   G   D     T+I    
Sbjct: 78  LFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLS 137

Query: 127 KIGRLKEATDYMEQMVTDGV-----------------------------------QLDIV 151
           K GR+  A    + M   G+                                     D +
Sbjct: 138 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 197

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YN LI+  CK G +EAA    DEM + G + D YT+ ILI G CKAGN   A   L   
Sbjct: 198 TYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQE 257

Query: 212 NKI-GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAKR 266
             I G   ++  Y  IVD L K+ KI+ A+ + E +          TY+++++ LCK  R
Sbjct: 258 TTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGR 317

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           L  A  LL   + +G         +++DGL       EA K+
Sbjct: 318 LEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 359



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 143/291 (49%), Gaps = 5/291 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           + A+ +   +  +G  P + TYN L+ GLCK GRL  A  +L+++ D+G  P+ +TYT++
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 62

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +    + ++     ++   M  +G   D   Y  +I   ++ G++ +A+   + M + G 
Sbjct: 63  IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 122

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
             D+V+ +T+I+   K G++ AA  +   ME +G   ++  ++ LI GLCKA  +  A  
Sbjct: 123 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 182

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-EV---KDSFTYSSMVHNLC 262
            L  M K     +   YN ++D L K G ++ A   F+ M E     D +TY+ ++   C
Sbjct: 183 MLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFC 242

Query: 263 KAKRLPSAS-KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           KA    +AS  L      +G  I      A+VD L  +    EA  +  KI
Sbjct: 243 KAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKI 293



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 145/317 (45%), Gaps = 40/317 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP T T+N++++GLCK+   + A   F  + + G  P++ TYNILI G CKAG    A  
Sbjct: 193 TPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASH 252

Query: 67  IL-KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            L +E   +G   +  TYT I+    +N+K +  + ++  +   G T     Y  ++   
Sbjct: 253 SLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGL 312

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+GRL+EA D + ++V +G   D+V+Y +LI+   KE +   AY L  EM  +G   D 
Sbjct: 313 CKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDT 372

Query: 186 YTHTILI-----------------------------------DGLCKAGNIKGARLHLEY 210
             +T LI                                   DGL KAG I  A    + 
Sbjct: 373 VCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKS 432

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M   G   N   Y+ ++  L K  K+D A+ +   M+      D+ TY+ ++  LCK+  
Sbjct: 433 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 492

Query: 267 LPSASKLLLSCLKSGVR 283
           + +A       L++G +
Sbjct: 493 VEAARAFFDEMLEAGCK 509



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 107/206 (51%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +  ++  L +      A  +++ +  HG VP++VT + +I GL KAGR+  A  I K
Sbjct: 372 TVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFK 431

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G APN + Y+ ++    + RK    LE+L+ MK+   T D   Y  +I    K G
Sbjct: 432 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 491

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++ A  + ++M+  G + D+ +YN LI+ +CK G  +AA  + D+M       +  T+ 
Sbjct: 492 DVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYG 551

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIG 215
            LI GLCK   +  A L+ ++M + G
Sbjct: 552 ALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 35/175 (20%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    ++ +++GLCK R  D AL M   ++K    P+ +TYNILI GLCK+G +  AR
Sbjct: 438 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 497

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+ ++G  P+  TY  +                                   I+ F
Sbjct: 498 AFFDEMLEAGCKPDVYTYNIL-----------------------------------ISGF 522

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            K G    A    + M +     ++V+Y  LI+  CK  +L  A L    M+++G
Sbjct: 523 CKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 152/316 (48%), Gaps = 13/316 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDN-ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   ++N +L+ + + + +   A  +F+ + + G  P + TYNILI+G C AG L     
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLX 224

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              E+  +G  PN +TY TI+    + RK     ++L  M  KG   +   Y  VI    
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G++KE ++ +E+M       D V++NTLIN YC  G    A +L  EM K G   +  
Sbjct: 285 REGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVV 344

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LI+ +CKAGN+  A   L+ M   G   N   Y  ++D   + G +  A  + + M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 247 EVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            V++ F     TY+++++  C   R+  AS LL   ++ G      +   ++ G     C
Sbjct: 405 -VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGF----C 459

Query: 302 RRE--AKKIQSKIRMA 315
           R +   K  Q K+ M 
Sbjct: 460 RNQELEKAFQLKVEMV 475



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+NI++ G C     +  L  F  ++++G +P +VTYN +I   CK  +
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ +   G  PN I+Y  ++    R  + K   EIL  M ++ Y  D   + T
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNT 313

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +  +G   +A     +MV +G+  ++V+Y TLIN  CK G L  A   LD+M  +G
Sbjct: 314 LINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRG 373

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T LIDG  + G +K A   ++ M + GF   +  YN +++     G+++ A 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + M     + D  +YS+++   C+ + L  A +L +  +  G+    +   +++ GL
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 152/325 (46%), Gaps = 25/325 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G  +  +   A ++ + + ++GF P ++TYN LI G C  GR+  A 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ + G  P+ ++Y+TI+    RN++ +   ++   M  KG + D   Y ++I   
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL E  D  ++M++ G+  D V+Y +LIN YC EG L+ A  L DEM ++GF  D 
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDI 553

Query: 186 YTHTILIDGLCKAGNIKGAR---LHLEYMNKIGFDSNLEAYNCIVDRLGK---------- 232
            T+ +LI+G  K    K A+   L L Y   +    N   YN ++D              
Sbjct: 554 VTYNVLINGFNKQSRTKEAKRLLLKLLYEESV---PNEITYNTLIDNCNNLEFKSALALM 610

Query: 233 -----DGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                 G ++ A  V ESM  K    +   Y+ ++H   K   +  A  L    L SG  
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKI 308
                  A+   L H G   E  ++
Sbjct: 671 PHSVTIMALAKSLYHEGKEVELNQL 695



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 4/276 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFN ++NG C       AL +   + K+G  P +VTY  LI  +CKAG L  A  
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAME 364

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L ++ D G  PN  TYTT++    +    K   +I+  M   G+T     Y  +I    
Sbjct: 365 FLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHC 424

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            +GR+++A+  +++M+  G   D+VSY+T+I+ +C+  +LE A+ L  EM  +G   D  
Sbjct: 425 ILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVA 484

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LI GLCK   +       + M  +G   +   Y  +++    +G +D A+ + + M
Sbjct: 485 TYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
             K    D  TY+ +++   K  R   A +LLL  L
Sbjct: 545 IQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 20/315 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   T+N ++NG C     ++A  + + + + GF+P++V+Y+ +I G C+   
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE 463

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  E+   G +P+  TY+++++   + R+     ++   M   G   D   Y +
Sbjct: 464 LEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+   G L +A    ++M+  G   DIV+YN LIN + K+ + + A  LL ++  + 
Sbjct: 524 LINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE 583

Query: 181 FECDKYTHTILID---------------GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
              ++ T+  LID               G C  G +  A   LE M + G+  N E YN 
Sbjct: 584 SVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNV 643

Query: 226 IVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           I+    K G I+ A N+++ M        S T  ++  +L    +    ++LL   LKS 
Sbjct: 644 IIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKS- 702

Query: 282 VRILKSAQKAVVDGL 296
            RI ++A   V+ G+
Sbjct: 703 CRITEAALAKVLIGI 717



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 117/260 (45%), Gaps = 28/260 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  ++N  C     D ALR+   + + GF P++VTYN+LI G  K  R
Sbjct: 509 MLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSR 568

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ +L +L      PN ITY T++  C  N ++K  L ++             G+C 
Sbjct: 569 TKEAKRLLLKLLYEESVPNEITYNTLIDNC-NNLEFKSALALMK------------GFCM 615

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                   G + EA   +E M+  G +L+   YN +I+ + K G +E AY L  EM   G
Sbjct: 616 K-------GLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHL----EYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           F      H++ I  L K+   +G  + L    +Y  K    +       ++    K+G +
Sbjct: 669 FA----PHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNM 724

Query: 237 DHAINVFESMEVKDSFTYSS 256
           D   NV + M +     YSS
Sbjct: 725 DAVFNVLKDMALSGLLPYSS 744


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 144/286 (50%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI++  LC   +   AL + R ++  G  P +VTYN L+    +AG 
Sbjct: 181 MLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 240

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++  + + G  PN +T+ +++    +  K +   ++   M R+G   DG  Y T
Sbjct: 241 VDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNT 300

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K G   EA     +M   G+  D+V++ +LI++ CK G LE A  L+ +M ++G
Sbjct: 301 LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERG 360

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + ++ T T LIDG CK G +  A L +  M +     ++  YN +++     G++D A 
Sbjct: 361 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEAR 420

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME K    D  TYS+++   CK     SA +L    L+ GV
Sbjct: 421 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGV 466



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 155/313 (49%), Gaps = 4/313 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L P   TFN M+NG+CK    ++A ++F  + + G  P+ V+YN L+ G CKAG    
Sbjct: 254 GGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHE 313

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +  E+   G  P+ +T+T+++    +    +  + ++  M+ +G   +   +  +I 
Sbjct: 314 ALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALID 373

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F K G L +A   +  M    ++  +V YN LIN YC  G+++ A  LL EME +G + 
Sbjct: 374 GFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 433

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T++ +I   CK  +   A    + M + G   +   Y+ ++  L  + ++  A  +F
Sbjct: 434 DVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLF 493

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           ++M       D FTY+S++   CK   + SA  L    +K+GV         +++GL  S
Sbjct: 494 KNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKS 553

Query: 300 GCRREAKKIQSKI 312
               EA+++  K+
Sbjct: 554 ARAMEAQQLLFKL 566



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 135/272 (49%), Gaps = 5/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    +N +L  L     T +A R F  +   G  P + TYNIL++ LC  G  + A  
Sbjct: 153 VPSVLAYNAVLLALSDASLT-SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALS 211

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL+++  +G  PN +TY T++   FR  +      ++  M+  G   +   + +++    
Sbjct: 212 ILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMC 271

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++++A    ++MV +G+  D VSYNTL+  YCK G    A  +  EM ++G   D  
Sbjct: 272 KAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVV 331

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T T LI  +CKAGN++ A   +  M + G   N   +  ++D   K G +D A+     M
Sbjct: 332 TFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 391

Query: 247 E---VKDSFT-YSSMVHNLCKAKRLPSASKLL 274
           +   +K S   Y+++++  C   R+  A +LL
Sbjct: 392 KQCRIKPSVVCYNALINGYCMVGRMDEARELL 423



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 155/320 (48%), Gaps = 19/320 (5%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF  +++G CK  + D+AL   RG+++    P +V YN LI G C  GR+  AR +L E+
Sbjct: 367 TFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM 426

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ +TY+TI+    +N       E+   M  KG   D   Y ++I       RL
Sbjct: 427 EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRL 486

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A    + M+  G+Q D  +Y +LI+ +CKEG +E+A  L D+M K G   D  T+++L
Sbjct: 487 SDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVL 546

Query: 192 IDGLCKAGNIKGAR---LHLEYMNKIGFDSNLEAY-NC-----------IVDRLGKDGKI 236
           I+GL K+     A+     L + + I  ++  +A  +C           ++      G +
Sbjct: 547 INGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLM 606

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           + A  V++SM  +    D   YS ++H  C+A  +  A       L+ G     ++  ++
Sbjct: 607 NEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISL 666

Query: 293 VDGLRHSGCRREAKKIQSKI 312
           + GL  +G   EA ++  ++
Sbjct: 667 IRGLFENGMVVEADQVIQQL 686



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 21/256 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+  +++G CK    ++AL +   + K G +P++VTY++LI GL K+ R
Sbjct: 496 MIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 555

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +L +L      P    Y  +M CC   RK +L   +L+ +K         G+C 
Sbjct: 556 AMEAQQLLFKLYHEDPIPANTKYDALMHCC---RKAELK-SVLALLK---------GFCM 602

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                   G + EA    + M+     LD   Y+ LI+ +C+ G +  A     +M + G
Sbjct: 603 K-------GLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGG 655

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  +  +   LI GL + G +  A   ++ +      ++ EA   ++D    +G +D  +
Sbjct: 656 FAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVL 715

Query: 241 NVFESMEVKDSFTYSS 256
           +V   M  KD    S 
Sbjct: 716 DVLHGM-AKDGLLPSP 730


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 163/315 (51%), Gaps = 17/315 (5%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L+ L K+R    A  + R L++  F P+ VTYN L  G C+      A  IL+++ 
Sbjct: 178 FNSLLDALVKSRRASKAASLVRALEQR-FPPDAVTYNTLADGWCRVKDTSRALDILRQMV 236

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----FDGFGYCTVIAAFVK 127
           +SG AP   TY  I+K  FR+ + +   +    MKR+G        D   Y TV+     
Sbjct: 237 ESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGV 296

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L +A    ++M  +G +    +YN LI + CK+G LE A  + D+M ++G+  +  T
Sbjct: 297 AGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVT 356

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LI GLC AG +  A   L+ M   G + N++ YN ++    ++G+I+  +++FE+M 
Sbjct: 357 YTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFETMS 416

Query: 248 -----VKDSFTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
                + +  TY+ ++  +   KR   +  A+++++  +  G    K     V++GL  +
Sbjct: 417 KGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRKFMFNRVLNGLMLT 476

Query: 300 GCR---REAKKIQSK 311
           G +   RE  ++Q K
Sbjct: 477 GNQELSRELLRMQEK 491



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-----VPELVTYNILIKGL 55
           M+   + P  AT+NI+L G  ++    +A   F  +++ G       P++V+Y  ++ GL
Sbjct: 235 MVESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGL 294

Query: 56  CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
             AG+L  AR +  E+   G  P+  TY  +++   +    +  + +   M RKGY  + 
Sbjct: 295 GVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNV 354

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  +I      G++  A   +++M ++G + ++ +YN LI    +EG++E    L + 
Sbjct: 355 VTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFET 414

Query: 176 MEKQGFEC--DKYTHTILIDGL 195
           M K G EC  ++ T+ I+I  +
Sbjct: 415 MSK-GEECLPNQDTYNIIISAM 435



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 4/175 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P TAT+N ++   CK    ++A+ +F  + + G++P +VTY +LI+GLC AG++  A  +
Sbjct: 317 PSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRAMKL 376

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-YCTVIAAFV 126
           L  +   G  PN  TY  +++      + + GL++   M +          Y  +I+A  
Sbjct: 377 LDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFETMSKGEECLPNQDTYNIIISAMF 436

Query: 127 KIGRLKE---ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
              R ++   A   + +MV  G       +N ++N     G  E +  LL   EK
Sbjct: 437 VRKRAEDMAVAARMVVEMVDRGYLPRKFMFNRVLNGLMLTGNQELSRELLRMQEK 491


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 4/269 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +LNGL  + + ++A R+   ++     P++VTYN +IKG C+ G+ + A 
Sbjct: 163 VEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAF 222

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +++     AP+ ITY T+++ C+    + L L +   M   G       Y  VI   
Sbjct: 223 EKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGL 282

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+  E     E+M+  G ++++  Y  LI+   K G +  A LL + M+K+G E D 
Sbjct: 283 CKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDV 342

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ ++++ +CK+G +  A  +LE+    G   N   Y+ ++D LGK G++  A  +FE 
Sbjct: 343 VTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEE 402

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSA 270
           M  K    DS+ Y++++  L K  +   A
Sbjct: 403 MVKKGCPPDSYCYNALIDALAKCGKTDEA 431



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 4/284 (1%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
            +  L ++RG++++G  P L TYN L+ GL  +  + +A  +L+ + +    P+ +TY T
Sbjct: 148 VEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNT 207

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++K   +  K +   E    M+ +    D   Y T+I A    G          +M  +G
Sbjct: 208 MIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENG 267

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +++   +Y+ +I   CKEGK    Y + ++M ++G + +   +T LID   K GN+  A 
Sbjct: 268 LEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAM 327

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
           L  E M K G + ++  Y  +V+ + K G++D A+   E   V     ++  YSS++  L
Sbjct: 328 LLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGL 387

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            KA R+  A KL    +K G         A++D L   G   EA
Sbjct: 388 GKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEA 431



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 4/296 (1%)

Query: 17  LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76
           ++ L  N   DN   +F   +  GF+  +   N LIK     G +    W+ + + ++G 
Sbjct: 104 IDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGV 163

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
            P+  TY  ++     +   +    +L  M+      D   Y T+I  + ++G+ ++A +
Sbjct: 164 EPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFE 223

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
               M    V  D ++Y TLI     EG  +    L  EM++ G E   + ++++I GLC
Sbjct: 224 KFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLC 283

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSF 252
           K G         E M + G   N+  Y  ++D   K G +  A+ +FE M+ +    D  
Sbjct: 284 KEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVV 343

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           TY  +V+ +CK+ RL  A + L  C  +GV +      +++DGL  +G   EA+K+
Sbjct: 344 TYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKL 399



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 3/241 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+ +++N +CK+   D A+      + +G     + Y+ LI GL KAGR+  A 
Sbjct: 338 LEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAE 397

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+   G  P++  Y  ++    +  K    L     M+ +G     + Y  +I   
Sbjct: 398 KLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGL 457

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  + +EA    + M+  G+     ++  L    C  GK+  A  LLDE+   G    +
Sbjct: 458 FREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGV-IPE 516

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
                +++ LCKAG IK A +L   ++++ G +        +++ L K G  D A+ +  
Sbjct: 517 TAFEDMLNVLCKAGRIKEACKLADGFVDR-GREIPGRVRTVLINALRKAGNADLALKLMH 575

Query: 245 S 245
           S
Sbjct: 576 S 576



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 7/229 (3%)

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILS-AMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           +PN +++  ++K     ++  L L+  + A K+K YT +   Y + I      G L    
Sbjct: 60  SPNFVSF--VLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVK 117

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
               +    G  +++ + N+LI  +   G +E    +   M++ G E   +T+  L++GL
Sbjct: 118 SVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGL 177

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
             +  I+ A   LE M       ++  YN ++    + GK   A   F  ME++    D 
Sbjct: 178 VNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDK 237

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            TY +++              L     ++G+ I   A   V+ GL   G
Sbjct: 238 ITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEG 286



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP  A F  +  GLC +     A ++   L   G +PE   +  ++  LCKAGR
Sbjct: 473 MIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPE-TAFEDMLNVLCKAGR 531

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
           ++ A  +     D G        T ++    +     L L+++ +    GY
Sbjct: 532 IKEACKLADGFVDRGREIPGRVRTVLINALRKAGNADLALKLMHSKIGIGY 582


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 138/273 (50%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T  I++N  C     D AL +   + K G  P+  T+  L++GLC  G++  A 
Sbjct: 87  IPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEAL 146

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TY T+M    ++R+    L + S M  KG + D F Y ++I A 
Sbjct: 147 DVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHAL 206

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +   K  T  + +MV   +  ++VS N +++  CKEGK+  A+ ++D M + G E D 
Sbjct: 207 CNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDV 266

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+DG C    +  A    + M + G   N+ +YN +++   K  +ID A+ +FE 
Sbjct: 267 VTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEE 326

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     + ++ TYS+++H LC   RL  A  L 
Sbjct: 327 MCRQELIPNTMTYSTLIHGLCHVGRLQDAIALF 359



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 144/312 (46%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGLCK+R    AL +F  +   G  P++ TYN LI  LC    
Sbjct: 152 MVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCE 211

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +    +L E+  S   PN ++   ++    +  K     +++  M + G   D   Y  
Sbjct: 212 WKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAA 271

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++        + EA    + MV +G   ++VSYNTLIN YCK  +++ A  L +EM +Q 
Sbjct: 272 LMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQE 331

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T++ LI GLC  G ++ A      M   G   NL  Y+ ++D L K+ ++  A+
Sbjct: 332 LIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAM 391

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + +++E      D   Y+  +  +C+A  L +A  L  +    G++        ++ GL
Sbjct: 392 ALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGL 451

Query: 297 RHSGCRREAKKI 308
              G   EA K+
Sbjct: 452 CKRGLLDEASKL 463



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 142/312 (45%), Gaps = 39/312 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI G + P   T+  +++G C     D A+++F  + ++G V  +V+YN LI G CK  R
Sbjct: 257 MIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQR 316

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A ++ +E+      PN +TY+T++                             G C 
Sbjct: 317 IDKAMYLFEEMCRQELIPNTMTYSTLIH----------------------------GLC- 347

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                  +GRL++A     +MV  G   ++V+Y+ L++  CK  +L  A  LL  +E   
Sbjct: 348 ------HVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSN 401

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   + I IDG+C+AG+++ AR     +   G   ++  +N ++  L K G +D A 
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEAS 461

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+    +++  TY+++   L +  +   A +LL   L  G     S    +V  L
Sbjct: 462 KLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKML 521

Query: 297 RHSGCRREAKKI 308
              G  +  K+I
Sbjct: 522 SDDGLDQSVKQI 533



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 6/260 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+AL  F  +      P +  +  L+  + K     T   + K++   G  P+  T T +
Sbjct: 38  DDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIV 97

Query: 87  MKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +   C  NR     L +L+ + + G+  D   + T++     +G++ EA D  ++MV +G
Sbjct: 98  INSFCHLNR-VDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEG 156

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            Q ++V+Y TL+N  CK+ +L  A  L  EM  +G   D +T+  LI  LC     K   
Sbjct: 157 FQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVT 216

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNL 261
             L  M K     N+ + N +VD L K+GK+  A +V + M       D  TY++++   
Sbjct: 217 TLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGH 276

Query: 262 CKAKRLPSASKLLLSCLKSG 281
           C    +  A K+    +++G
Sbjct: 277 CLRSEMDEAVKVFDMMVRNG 296


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 162/343 (47%), Gaps = 43/343 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P T T+  +L  LC+ +  + A  +FRG+   G  P + +Y+ILI GLC+  +
Sbjct: 43  MLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L E+ D GH PN +TY +++    +  K K  +++ S M  +G   DG  Y  
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K G + EA    E+M+  G    + +YN+L++ + ++G+      L  +M +QG
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARLHLEY----------------------------- 210
              + +T   L+DG CK G+ ++  RL LE                              
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQ 282

Query: 211 -----MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                M + G   ++ +YN ++D   K G +DHAI +F  +       D+F+YS+++  L
Sbjct: 283 RLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCL 342

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           C+A ++ +A  +    + +G     +   AVV  L    CR E
Sbjct: 343 CRAGKVGAAFVVFKDMIANG----SAPDAAVVIPLVIGLCRGE 381



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 4/283 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI G   P   T+  +L+GLCK      A+ +F  +   G  P+ V YN+LI G  K G 
Sbjct: 113 MIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGD 172

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +E+ + G  P   TY +++    R  ++     +   M R+G   + F +  
Sbjct: 173 MGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNN 232

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F K+G + EA     +M + G   D+VSYNTL+   C +GK   A  LL EM + G
Sbjct: 233 LLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSG 292

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  ++ ILIDG  K+G +  A      + K G + +  +Y+ I+D L + GK+  A 
Sbjct: 293 VGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAF 352

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
            VF+ M       D+     +V  LC+ +RL  + +L  + +K
Sbjct: 353 VVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 148/307 (48%), Gaps = 4/307 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T ++N +L  L K+   D+    +  +   G VP   TY  L++ LC+A R   AR + +
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G +PN  +Y+ ++    R +K     E+L+ M   G+  +   Y ++++   K+G
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +LKEA D   +MV  G   D V YN LI+ + K+G +  AY L +EM ++G     +T+ 
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            L+ G  + G     +   + M + G   N+  +N ++D   K G +  A  +F  M   
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D  +Y++++  +C   +   A +LL   ++SGV     +   ++DG   SG    A
Sbjct: 257 GCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHA 316

Query: 306 KKIQSKI 312
            K+  +I
Sbjct: 317 IKLFYEI 323



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 7/204 (3%)

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           Y      Y  ++    K GR          M+  G   +  +Y  L+   C+  + E A 
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +   M  QG   + ++++ILI GLC+   +  A   L  M   G   N+  Y  ++  L
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            K GK+  A+++F  M  +    D   Y+ ++    K   +  A +L    L+ G     
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192

Query: 287 SAQKAVVDGLRHSGCRREAKKIQS 310
               +++ G    G   E  ++QS
Sbjct: 193 FTYNSLLSGFSRKG---EFGRVQS 213



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 40/88 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P  A    ++ GLC+      +  +F+ + K   VP +  YN+L+  LCKA R
Sbjct: 358 MIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKR 417

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
                 I  EL + G +P+      I++
Sbjct: 418 SDDVCEIFHELTERGFSPDVEISKVILE 445


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 4/306 (1%)

Query: 7    TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            TP   +++ ++NG C+    D   ++   +++ G  P   TY  +I  LC+  +L  A  
Sbjct: 701  TPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEE 760

Query: 67   ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
               E+   G  P+ I YTT++    +    +   +    M  +  T D   Y  +I+ F 
Sbjct: 761  AFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC 820

Query: 127  KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            +IG + EA     +M+  G++ DI+++  L+N YCK G ++ A+ + + M + G   +  
Sbjct: 821  QIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVV 880

Query: 187  THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            T+T LIDGLCK G++  A   L  M KIG   N+  YN IV+ L K G I+ A+ +    
Sbjct: 881  TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 940

Query: 247  EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            E      D+ TY++++   CK+  +  A ++L   L  G++        +++G    G  
Sbjct: 941  EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGML 1000

Query: 303  REAKKI 308
             + +K+
Sbjct: 1001 EDGEKL 1006



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 161/308 (52%), Gaps = 6/308 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            A++NI+++ +C+    + A  +   ++  G+ P++++Y+ +I G C+ G L     +++
Sbjct: 669 VASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIE 728

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G  PN+ TY +I+    R  K     E  S M  +G   D   Y T++  F K G
Sbjct: 729 KMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRG 788

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++ A+ +  +M +  +  D+++Y  +I+ +C+ G +  A  L  EM  +G E D  T T
Sbjct: 789 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFT 848

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
            L++G CKAG+IK A R+H  +M + G   N+  Y  ++D L K+G +D A  +   M  
Sbjct: 849 ELMNGYCKAGHIKDAFRVH-NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 907

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                + FTY+S+V+ LCK+  +  A KL+     +G+         ++D    SG   +
Sbjct: 908 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 967

Query: 305 AKKIQSKI 312
           A++I +++
Sbjct: 968 AQEILTEM 975



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 147/313 (46%), Gaps = 4/313 (1%)

Query: 5    DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
            D+TP   T+  +++G C+      A ++F  +   G  P+++T+  L+ G CKAG ++ A
Sbjct: 804  DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDA 863

Query: 65   RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
              +   +  +G +PN +TYTT++    +        E+L  M + G   + F Y +++  
Sbjct: 864  FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 923

Query: 125  FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
              K G ++EA   + +    G+  D V+Y TL++ YCK G+++ A  +L EM  +G +  
Sbjct: 924  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPT 983

Query: 185  KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              T  +L++G C  G ++     L +M   G   N   +NC+V +      +  A  +++
Sbjct: 984  IVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYK 1043

Query: 245  SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             M       D  TY ++V   C A+ +  A  L       G  +  S    ++ G     
Sbjct: 1044 DMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRK 1103

Query: 301  CRREAKKIQSKIR 313
               EA++I  ++R
Sbjct: 1104 KFVEAREIFDQMR 1116



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 156/311 (50%), Gaps = 7/311 (2%)

Query: 14  NIMLNGLCKN-RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           N+ L  L K+   T  A+ +FR   + G    + +YNI+I  +C+ GR+  A  +L  + 
Sbjct: 637 NVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLME 696

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G+ P+ I+Y+T++    R  +     +++  MK+KG   + + Y ++I    +I +L 
Sbjct: 697 LKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLA 756

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA +   +M+  G+  D + Y TL++ +CK G + AA     EM  +    D  T+T +I
Sbjct: 757 EAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 816

Query: 193 DGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
            G C+ G+ ++  +L  E + + G + ++  +  +++   K G I  A  V   M     
Sbjct: 817 SGFCQIGDMVEAGKLFHEMLCR-GLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGC 875

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             +  TY++++  LCK   L SA++LL    K G++       ++V+GL  SG   EA K
Sbjct: 876 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 935

Query: 308 IQSKIRMAKIS 318
           +  +   A ++
Sbjct: 936 LVGEFEAAGLN 946



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 8/298 (2%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+C  L P   TF  ++NG CK  +  +A R+   + + G  P +VTY  LI GLCK G 
Sbjct: 835  MLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 894

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L +A  +L E+   G  PN  TY +I+    ++   +  ++++   +  G   D   Y T
Sbjct: 895  LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT 954

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++ A+ K G + +A + + +M+  G+Q  IV++N L+N +C  G LE    LL+ M  +G
Sbjct: 955  LMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1014

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               +  T   L+   C   N+K A    + M   G + + + Y  +V        +  A 
Sbjct: 1015 IAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAW 1074

Query: 241  NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
             +F+ M+ K       TYS ++    K K+   A ++     + G+    +A K + D
Sbjct: 1075 FLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGL----AADKEIFD 1128



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 114/241 (47%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P   T+N ++NGLCK+   + A+++    +  G   + VTY  L+   CK+G +  A+
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             IL E+   G  P  +T+  +M     +   + G ++L+ M  KG   +   +  ++  +
Sbjct: 970  EILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQY 1029

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                 LK AT   + M + GV+ D  +Y  L+  +C    ++ A+ L  EM+ +GF    
Sbjct: 1030 CIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSV 1089

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             T+++LI G  K      AR   + M + G  ++ E ++   D   K  + D  ++  + 
Sbjct: 1090 STYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPIDE 1149

Query: 246  M 246
            +
Sbjct: 1150 I 1150


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 151/311 (48%), Gaps = 13/311 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T NI++ GLC+    D A R+   L+  G +P+++TYN LI GLC+   +  AR +
Sbjct: 174 PVTYTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSL 233

Query: 68  LKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           LKE+  +G  AP+ ++YTTI+    +  K + G  +   M R G   + F +  +I  F 
Sbjct: 234 LKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFG 293

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G +  A    E+M+  G   D+ ++ +LIN Y + G++  A  +  +M  +      Y
Sbjct: 294 KLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLY 353

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T ++L+ GLC    +  AR  L  +N+         YN ++D   K G +D A  +   M
Sbjct: 354 TFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEM 413

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH---- 298
           EV     D  T++ ++   C   R+P A  +    L  G     +  +  V+ LR     
Sbjct: 414 EVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGC----APDEITVNNLRSCLLK 469

Query: 299 SGCRREAKKIQ 309
           +G   EA +++
Sbjct: 470 AGMPGEAARVK 480



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 145/345 (42%), Gaps = 40/345 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++++L  LC++     A  ++  ++  G +P+      L+      GRL  +R +L ++
Sbjct: 73  TYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLADV 132

Query: 72  GDSGHAPNAITYTTIMKCCFRNRK---------------YKL------------------ 98
             +    NA+ Y  +     R  K               YK                   
Sbjct: 133 QCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGEI 192

Query: 99  --GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNT 155
                +L+ ++  G   D   Y T+I    +I  +  A   ++++  +G    D+VSY T
Sbjct: 193 DEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTT 252

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +I+ YCK  K+E   LL  EM + G   + +T   LI G  K G++  A    E M   G
Sbjct: 253 IISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQG 312

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSAS 271
              ++  +  +++   + G++  A++++  M  K+     +T+S +V  LC   RL  A 
Sbjct: 313 CVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKAR 372

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            +L    +S +         V+DG   SG   EA KI +++ + +
Sbjct: 373 DILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNR 417



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 2/200 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P T TFN ++ G  K     +AL ++  +   G VP++ T+  LI G  + G+
Sbjct: 273 MIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQ 332

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +  ++ D        T++ ++   C  NR +K   +IL  +         F Y 
Sbjct: 333 VHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHK-ARDILRLLNESDIVPQPFIYN 391

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            VI  + K G + EA   + +M  +  + D +++  LI  +C +G++  A  +  +M   
Sbjct: 392 PVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAV 451

Query: 180 GFECDKYTHTILIDGLCKAG 199
           G   D+ T   L   L KAG
Sbjct: 452 GCAPDEITVNNLRSCLLKAG 471



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 108/237 (45%), Gaps = 5/237 (2%)

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
           +TY+ +++   R+  +     +   M+  G   D      ++ ++  +GRL  + + +  
Sbjct: 72  LTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLAD 131

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           +  + V ++ V YN L N+  ++ K+  A +L  E+ +  ++   YT  IL+ GLC+AG 
Sbjct: 132 VQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGE 191

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYS 255
           I  A   L  +   G   ++  YN ++  L +  ++D A ++ + + +   F     +Y+
Sbjct: 192 IDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYT 251

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +++   CK  ++   + L    ++SG         A++ G    G    A  +  K+
Sbjct: 252 TIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKM 308


>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 913

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 128/263 (48%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           + + + G C     D A  + R ++K G VP++  Y  LI   CKAG L  A   L E+ 
Sbjct: 306 YTVAVRGFCNELKFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMM 365

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G   N +   +I+ C      +   ++  +  K  G   DG  Y  V+ A  K+G+L+
Sbjct: 366 SKGVKVNCVIVGSILHCLCELGMHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLE 425

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +++M    + +D++ Y TLIN YC +G +  A+ + +EM + G E D  T+ +L+
Sbjct: 426 EAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLV 485

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
            G C+ G    A   L+YM       N   YN +V+ L   GK+  A  VF S+E K   
Sbjct: 486 SGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKVKEAEAVFNSIEDKSLD 545

Query: 253 TYSSMVHNLCKAKRLPSASKLLL 275
            Y +M++  CKA     A+KL  
Sbjct: 546 NYFAMINGYCKANHTAGAAKLFF 568



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 142/308 (46%), Gaps = 4/308 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N ++N L KN   D AL +++ L++ G  P   TY I+IK LC  G L  A +++KE+ +
Sbjct: 202 NFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEE 261

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           SG  P    YT  ++    N    LG ++L A K      D + Y   +  F    +  +
Sbjct: 262 SGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELKFDK 321

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +  M  +G+  D+  Y  LI  +CK G L  AY  L+EM  +G + +      ++ 
Sbjct: 322 AESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVKVNCVIVGSILH 381

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
            LC+ G              +G   +  +YN +VD L K GK++ AI + + M++K    
Sbjct: 382 CLCELGMHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITLLDEMKMKQINM 441

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           D   Y+++++  C    +  A K+     ++G+ I       +V G   +G   EA  + 
Sbjct: 442 DVMHYTTLINGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLL 501

Query: 310 SKIRMAKI 317
             ++  K+
Sbjct: 502 DYMQTQKL 509



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 15/185 (8%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A  +F  L K G+ P+L+ Y I+I   C+   L+ A  +  ++   G  P+ +T+T ++ 
Sbjct: 635 AQSVFDMLLKRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLD 694

Query: 89  CCFRNRKYKL---------------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
              +    K+                L I + MK      D   Y  +I  + K+  L +
Sbjct: 695 GHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHD 754

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A    ++M+  G++ DI++Y  L++  C+ G ++ A  LLD+M  +G   D  T + L+ 
Sbjct: 755 AIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDTRTMSALLH 814

Query: 194 GLCKA 198
           G+ K 
Sbjct: 815 GILKT 819



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/340 (19%), Positives = 131/340 (38%), Gaps = 54/340 (15%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T++++++G C+N     AL +   +Q     P  +TYN++++ LC  G+++ A  +  
Sbjct: 478 VVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKVKEAEAVFN 537

Query: 70  ELGDS-------------------------------GHAPNAITYTTIMKCCFRNRKYKL 98
            + D                                GH   +  Y  +   C       +
Sbjct: 538 SIEDKSLDNYFAMINGYCKANHTAGAAKLFFRLSVKGHVKRSCCYNLLKNLCEEGDNDGI 597

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR---LKEATDYMEQMVTDGVQLDIVSYNT 155
            L +L  M         F Y  +  +  + G    +++A    + ++  G   D+++Y  
Sbjct: 598 -LMLLETMLNLNVEPSKFIYGKLFTSLCRAGGAAGMRKAQSVFDMLLKRGWTPDLIAYTI 656

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG--------LCKAGNIKGARLH 207
           +I  YC+   L+ A  L  +M+++G + D  T T+L+DG        +  A N KG    
Sbjct: 657 MITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLDGHHKAHIKKVYSAANAKGGNED 716

Query: 208 L-------EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSS 256
           +         M       ++  Y  ++D   K   +  AI VF+ M  +    D  TY++
Sbjct: 717 IFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTA 776

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++   C+   +  A  LL      G+        A++ G+
Sbjct: 777 LLSGCCQRGDVDRAVNLLDQMSLKGISPDTRTMSALLHGI 816



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 105/276 (38%), Gaps = 4/276 (1%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            Y+ L+K     G    A  +L ++G     P+      +M    +N K  + L +   +
Sbjct: 165 VYDALVKAYVSVGMFDDAIDVLFQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQL 224

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           KR G + + + Y  VI A    G L+EA   +++M   G+     +Y   I   C     
Sbjct: 225 KRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEESGITPTGFAYTAYIEGLCVNEMS 284

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           +  Y +L   +      D Y +T+ + G C       A   L  M K G   ++  Y  +
Sbjct: 285 DLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELKFDKAESVLRDMEKEGMVPDMHCYTAL 344

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + R  K G +  A      M  K    +     S++H LC+                 G+
Sbjct: 345 ICRFCKAGNLLKAYAFLNEMMSKGVKVNCVIVGSILHCLCELGMHSEVVDQFNQFKSLGL 404

Query: 283 RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            +   +   VVD L   G   EA  +  +++M +I+
Sbjct: 405 FLDGVSYNNVVDALCKLGKLEEAITLLDEMKMKQIN 440



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 112/290 (38%), Gaps = 33/290 (11%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL----GDSGHAPNAIT- 82
           +AL  F  L+  GF  ++ TY  +I+ LC  G  +  R I  ++     +    P  I+ 
Sbjct: 82  SALSFFNQLKDSGFKHDISTYAAIIRILCYWGLHKQLRSIFLDIIYVSCNDNDTPFEISH 141

Query: 83  ------------------------YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
                                   Y  ++K       +   +++L  M R+ +    F  
Sbjct: 142 FLDTLSDGFVDVDSKKQSLFMSKVYDALVKAYVSVGMFDDAIDVLFQMGRRRFVPHIFIC 201

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             ++ + +K  +L  A    +Q+   G+  +  +Y  +I   C  G LE A  ++ EME+
Sbjct: 202 NFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEE 261

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G     + +T  I+GLC           L+         ++ AY   V     + K D 
Sbjct: 262 SGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELKFDK 321

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
           A +V   ME    V D   Y++++   CKA  L  A   L   +  GV++
Sbjct: 322 AESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVKV 371



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 127/305 (41%), Gaps = 49/305 (16%)

Query: 11  ATFNIMLNGLCK-----------------------NRYTD------------NALRMFRG 35
            ++N +++ LCK                         YT             +A ++F  
Sbjct: 409 VSYNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEE 468

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++++G   ++VTY++L+ G C+ G    A  +L  +      PN+ITY  +++      K
Sbjct: 469 MRENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGK 528

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            K    + ++++ K        Y  +I  + K      A     ++   G       YN 
Sbjct: 529 VKEAEAVFNSIEDKSLD----NYFAMINGYCKANHTAGAAKLFFRLSVKGHVKRSCCYNL 584

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG---ARLHLEYMN 212
           L NL C+EG  +   +LL+ M     E  K+ +  L   LC+AG   G   A+   + + 
Sbjct: 585 LKNL-CEEGDNDGILMLLETMLNLNVEPSKFIYGKLFTSLCRAGGAAGMRKAQSVFDMLL 643

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMV--HNLCKAKR 266
           K G+  +L AY  ++    +   +  A+++F  M+ +    D  T++ ++  H+    K+
Sbjct: 644 KRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLDGHHKAHIKK 703

Query: 267 LPSAS 271
           + SA+
Sbjct: 704 VYSAA 708



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 15/124 (12%)

Query: 6   LTPCTATFNIMLNGLCK---------------NRYTDNALRMFRGLQKHGFVPELVTYNI 50
           + P   TF ++L+G  K               N    +AL ++  ++     P+++ Y +
Sbjct: 682 IKPDLVTFTVLLDGHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTV 741

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           LI G CK   L  A  +  E+ + G  P+ ITYT ++  C +       + +L  M  KG
Sbjct: 742 LIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKG 801

Query: 111 YTFD 114
            + D
Sbjct: 802 ISPD 805



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P    + ++++G CK     +A+ +F  + + G  P+++TY  L+ G C+ G +  A
Sbjct: 731 EIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRA 790

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG------Y 118
             +L ++   G +P+  T + ++    + R+        SA +   Y FDG+       +
Sbjct: 791 VNLLDQMSLKGISPDTRTMSALLHGILKTRQ-------CSAPQCLKY-FDGYSLSICHIF 842

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           C ++ A    G +    + +     D V
Sbjct: 843 CRIVQACYITGSIPSELENLSNFNLDDV 870


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 153/319 (47%), Gaps = 4/319 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   T+  +++G C+      A R+F  + +    P +V Y ILI+GLC   R
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESR 243

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + + + +SG  PN  TY T+M    +    K  LE+   M   G   +   +  
Sbjct: 244 ISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGI 303

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K   +  A  ++  M + GV  +I  YN LI+ YCK G L  A  L  E+EK  
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T++ILI GLC    ++ A   L+ M K GF  N   YN ++D   K+G ++ AI
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   M  K    +  T+S+++   CKA ++ +A  L    +  G+     A  A++DG 
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 297 RHSGCRREAKKIQSKIRMA 315
              G  +EA ++  +++ A
Sbjct: 484 FKDGNTKEAFRLHKEMQEA 502



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 54/296 (18%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++G CK      AL +   ++KH  +P++ TY+ILIKGLC   R+  A 
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+   G  PNA+TY T++                             GYC      
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLID----------------------------GYC------ 414

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +++A +   QM   G++ +I++++TLI+ YCK GK+EAA  L  EM  +G   D 
Sbjct: 415 -KEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDV 473

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF- 243
             +T LIDG  K GN K A RLH E M + G   N+   +C++D L KDG+I  AI +F 
Sbjct: 474 VAYTALIDGHFKDGNTKEAFRLHKE-MQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 244 ----------------ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                            S+   +   Y++++  LC   R+  ASK       SG+R
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLR 588



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 140/322 (43%), Gaps = 19/322 (5%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMF------RGLQKHGF--------VPELVTYNILIKG 54
           C + FN+ L+ L  +++T N   +        GL +           +P +   N+++ G
Sbjct: 109 CCSVFNV-LSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDG 167

Query: 55  LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           L K GR  T   +  ++   G +PN +TY T++  C R   +     +   M  K     
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
              Y  +I       R+ EA      M   G+  ++ +YNT+++ YCK   ++ A  L  
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYX 287

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           EM   G   +  T  ILIDGLCK   +  AR  L  M   G   N+  YNC++D   K G
Sbjct: 288 EMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAG 347

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
            +  A+++   +E    + D FTYS ++  LC   R+  A  LL    K G         
Sbjct: 348 NLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYN 407

Query: 291 AVVDGLRHSGCRREAKKIQSKI 312
            ++DG    G   +A ++ S++
Sbjct: 408 TLIDGYCKEGNMEKAIEVCSQM 429



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 139/320 (43%), Gaps = 56/320 (17%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T++I++ GLC     + A  + + ++K GF+P  VTYN LI G CK G +  A
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKA 422

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  ++ + G  PN IT++T++                             GYC     
Sbjct: 423 IEVCSQMTEKGIEPNIITFSTLID----------------------------GYC----- 449

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+++ A     +MV  G+  D+V+Y  LI+ + K+G  + A+ L  EM++ G   +
Sbjct: 450 --KAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPN 507

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---------------NLEAYNCIVDR 229
            +T + LIDGLCK G I  A + L ++ K G D+               N   Y  ++  
Sbjct: 508 VFTLSCLIDGLCKDGRISDA-IKL-FLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQG 565

Query: 230 LGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
           L  DG+I  A   F  M       D FT   ++    +A  L     L    LK G+   
Sbjct: 566 LCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPN 625

Query: 286 KSAQKAVVDGLRHSGCRREA 305
            S  + +  G   SG  + A
Sbjct: 626 SSVYRVLAKGYEESGYLKSA 645



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 15/183 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +  +++G  K+  T  A R+ + +Q+ G  P + T + LI GLCK GR
Sbjct: 464 MVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGR 523

Query: 61  LRTARWIL-------------KELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM 106
           +  A  +               EL  S  +PN + YT +++  C   R +K   +  S M
Sbjct: 524 ISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKAS-KFFSDM 582

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           +  G   D F    +I    +   L++       ++  G+  +   Y  L   Y + G L
Sbjct: 583 RCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYL 642

Query: 167 EAA 169
           ++A
Sbjct: 643 KSA 645


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 4/305 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +++ LCK R+ D+AL +F+ ++  G  P +VTY+ LI  LC  GR   A  +L ++ 
Sbjct: 187 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 246

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +    PN +T+  ++    +  K+    ++   M ++    D F Y ++I  F    RL 
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 306

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A    E MV+     D+ +YNTLI  +CK  ++E    L  EM  +G   D  T+T LI
Sbjct: 307 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 366

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVK 249
            GL   G+   A+   + M   G   ++  Y+ ++D L  +GK++ A+ VF+ M   E+K
Sbjct: 367 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 426

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D + Y++M+  +CKA ++     L  S    GV+        ++ GL      +EA  +
Sbjct: 427 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 486

Query: 309 QSKIR 313
             K++
Sbjct: 487 LKKMK 491



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 150/314 (47%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  +++GL  +     A+ +   + + G  P LVTY +++ GLCK G +  A  +
Sbjct: 112 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 171

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++  +    + + + TI+    + R     L +   M+ KG   +   Y ++I+    
Sbjct: 172 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 231

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V++N LI+ + KEGK   A  L D+M K+  + D +T
Sbjct: 232 YGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFT 291

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+G C    +  A+   E+M       +L+ YN ++    K  +++    +F  M 
Sbjct: 292 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 351

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D+ TY++++  L       +A K+    +  GV         ++DGL ++G   
Sbjct: 352 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 411

Query: 304 EAKKIQSKIRMAKI 317
           +A ++   ++ ++I
Sbjct: 412 KALEVFDYMQKSEI 425



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 4/262 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TFN +++   K      A ++   + K    P++ TYN LI G C   R
Sbjct: 245 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDR 304

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      P+  TY T++K   ++++ + G E+   M  +G   D   Y T
Sbjct: 305 LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 364

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G    A    +QMV+DGV  DI++Y+ L++  C  GKLE A  + D M+K  
Sbjct: 365 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 424

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D Y +T +I+G+CKAG +         ++  G   N+  YN ++  L     +  A 
Sbjct: 425 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 484

Query: 241 NVFESME----VKDSFTYSSMV 258
            + + M+    + DS TY++++
Sbjct: 485 ALLKKMKEDGPLPDSGTYNTLI 506



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 145/306 (47%), Gaps = 6/306 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + +LNG C  +   +A+ +   + + G+ P+ +T+  LI GL    +   A  +
Sbjct: 77  PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 136

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G  PN +TY  ++    +     L   +L+ M+      D   + T+I +  K
Sbjct: 137 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 196

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A +  ++M T G++ ++V+Y++LI+  C  G+   A  LL +M ++    +  T
Sbjct: 197 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 256

Query: 188 HTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
              LID   K G  ++  +LH + M K   D ++  YN +++      ++D A  +FE M
Sbjct: 257 FNALIDAFVKEGKFVEAEKLH-DDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 315

Query: 247 EVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             KD F    TY++++   CK+KR+   ++L       G+         ++ GL H G  
Sbjct: 316 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 375

Query: 303 REAKKI 308
             A+K+
Sbjct: 376 DNAQKV 381



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 134/273 (49%), Gaps = 6/273 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           P    FN +L+ + K +  D   +L +   + K G+ P +VT + L+ G C   R+  A 
Sbjct: 40  PSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 99

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ ++ + G+ P+ IT+TT++   F + K    + ++  M ++G   +   Y  V+   
Sbjct: 100 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 159

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +  A + + +M    ++ D+V +NT+I+  CK   ++ A  L  EME +G   + 
Sbjct: 160 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 219

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LI  LC  G    A   L  M +   + NL  +N ++D   K+GK   A  + + 
Sbjct: 220 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDD 279

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  +    D FTY+S+++  C   RL  A ++ 
Sbjct: 280 MIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMF 312



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 1/240 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   T+N ++ G CK++  ++   +FR +   G V + VTY  LI+GL   G 
Sbjct: 315 MVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 374

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ + K++   G  P+ +TY+ ++     N K +  LE+   M++     D + Y T
Sbjct: 375 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 434

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++ +  D    +   GV+ ++V+YNT+I+  C +  L+ AY LL +M++ G
Sbjct: 435 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 494

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI    + G+   +   +  M    F  +      + + L  DG++D + 
Sbjct: 495 PLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDKSF 553



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 4/183 (2%)

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           +M+  G +  IV+ ++L+N YC   ++  A  L+D+M + G+  D  T T LI GL    
Sbjct: 69  KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 128

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYS 255
               A   ++ M + G   NL  Y  +V+ L K G ID A N+   ME      D   ++
Sbjct: 129 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 188

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
           +++ +LCK + +  A  L       G+R       +++  L   G   +A ++ S +   
Sbjct: 189 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 248

Query: 316 KIS 318
           KI+
Sbjct: 249 KIN 251



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M++GLC  R    A  + + +++ G +P+  TYN LI+   + G    +  +
Sbjct: 462 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 521

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           ++E+       +A T   +       R  K  L++LS
Sbjct: 522 IREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 558


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 142/287 (49%), Gaps = 4/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NIM++ +CK    + A  +F  ++  G +P+ VTYN +I G  K GR
Sbjct: 124 MIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGR 183

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L    +  +E+      P+ ITY T++ C  +  K   GLE    MK+ G   +   Y T
Sbjct: 184 LDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYST 243

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K   +++A  +   M   G+  +  +Y +L++ YCK G L  A+ L DEM + G
Sbjct: 244 LVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVG 303

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+T LIDGLC    IK A      M   G   NL +Y  ++    K   +D A+
Sbjct: 304 VEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRAL 363

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            + + M+ +    D   Y + + +LC  +++ +A  ++    + G++
Sbjct: 364 ELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIK 410



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 136/293 (46%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ + + L +    + AL+ F  +++    P+  + N L+    + G+    +  
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++  +G  P   TY  ++ C  +    +    +   MK +G   D   Y ++I  + K
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GRL +   + E+M +   + D+++YNTLIN +CK GKL        EM++ G + +  +
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVS 240

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+D  CK   ++ A      M ++G   N   Y  +VD   K G +  A  + + M 
Sbjct: 241 YSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMS 300

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                 +  TY++++  LC  +R+  A +L    + +GV    ++  A++ G 
Sbjct: 301 QVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGF 353



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 152/317 (47%), Gaps = 7/317 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +++ +++  CK      AL+ +  +++ G VP   TY  L+   CK G L  A 
Sbjct: 234 LKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAF 293

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G   N +TYT ++       + K   E+   M   G   +   Y  +I  F
Sbjct: 294 RLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGF 353

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK   +  A + +++M   G++ D++ Y T I   C   K+EAA ++++EM+++G + + 
Sbjct: 354 VKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANT 413

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + +T L+D   K+ N       LE M ++  +     +  ++D L K+  +  AI+ F  
Sbjct: 414 FIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGR 473

Query: 246 ME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +        ++  Y++M+  LCK  ++ +A+ L     + G+   ++A  +++DG    G
Sbjct: 474 ISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQG 533

Query: 301 CRREAKKIQSKIRMAKI 317
              +A  ++ K  MA+I
Sbjct: 534 NVVQALALRDK--MAEI 548



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 1/219 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  A++  +++G  K +  D AL +   ++  G  P+L+ Y   I  LC   +
Sbjct: 334 MVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEK 393

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ ++ E+ + G   N   YTT+M   F++     GL +L  M           +C 
Sbjct: 394 IEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCV 453

Query: 121 VIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I    K   + +A DY  ++  D G+Q +   Y  +I+  CKE ++EAA  L ++M ++
Sbjct: 454 LIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQK 513

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           G   D+  +T LIDG  K GN+  A    + M +IG +S
Sbjct: 514 GLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVES 552


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 4/305 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +++ LCK R+ D+AL +F+ ++  G  P +VTY+ LI  LC  GR   A  +L ++ 
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +    PN +T+  ++    +  K+    ++   M ++    D F Y ++I  F    RL 
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A    E MV+     D+ +YNTLI  +CK  ++E    L  EM  +G   D  T+T LI
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVK 249
            GL   G+   A+   + M   G   ++  Y+ ++D L  +GK++ A+ VF+ M   E+K
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 427

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D + Y++M+  +CKA ++     L  S    GV+        ++ GL      +EA  +
Sbjct: 428 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 487

Query: 309 QSKIR 313
             K++
Sbjct: 488 LKKMK 492



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 150/314 (47%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  +++GL  +     A+ +   + + G  P LVTY +++ GLCK G +  A  +
Sbjct: 113 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 172

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++  +    + + + TI+    + R     L +   M+ KG   +   Y ++I+    
Sbjct: 173 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 232

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V++N LI+ + KEGK   A  L D+M K+  + D +T
Sbjct: 233 YGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFT 292

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+G C    +  A+   E+M       +L+ YN ++    K  +++    +F  M 
Sbjct: 293 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 352

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D+ TY++++  L       +A K+    +  GV         ++DGL ++G   
Sbjct: 353 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412

Query: 304 EAKKIQSKIRMAKI 317
           +A ++   ++ ++I
Sbjct: 413 KALEVFDYMQKSEI 426



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NI++N  C+      AL +   + K G+ P +VT + L+ G C   R+  A  ++ ++
Sbjct: 47  TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 106

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+ IT+TT++   F + K    + ++  M ++G   +   Y  V+    K G +
Sbjct: 107 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 166

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++ D+V +NT+I+  CK   ++ A  L  EME +G   +  T++ L
Sbjct: 167 DLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 226

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + NL  +N ++D   K+GK   A  + + M  +  
Sbjct: 227 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D FTY+S+++  C   RL  A ++ 
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMF 313



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 4/262 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TFN +++   K      A ++   + K    P++ TYN LI G C   R
Sbjct: 246 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDR 305

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      P+  TY T++K   ++++ + G E+   M  +G   D   Y T
Sbjct: 306 LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 365

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G    A    +QMV+DGV  DI++Y+ L++  C  GKLE A  + D M+K  
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D Y +T +I+G+CKAG +         ++  G   N+  YN ++  L     +  A 
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 485

Query: 241 NVFESME----VKDSFTYSSMV 258
            + + M+    + DS TY++++
Sbjct: 486 ALLKKMKEDGPLPDSGTYNTLI 507



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 145/306 (47%), Gaps = 6/306 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + +LNG C  +   +A+ +   + + G+ P+ +T+  LI GL    +   A  +
Sbjct: 78  PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 137

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G  PN +TY  ++    +     L   +L+ M+      D   + T+I +  K
Sbjct: 138 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 197

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A +  ++M T G++ ++V+Y++LI+  C  G+   A  LL +M ++    +  T
Sbjct: 198 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257

Query: 188 HTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
              LID   K G  ++  +LH + M K   D ++  YN +++      ++D A  +FE M
Sbjct: 258 FNALIDAFVKEGKFVEAEKLH-DDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 316

Query: 247 EVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             KD F    TY++++   CK+KR+   ++L       G+         ++ GL H G  
Sbjct: 317 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 376

Query: 303 REAKKI 308
             A+K+
Sbjct: 377 DNAQKV 382



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 1/239 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   T+N ++ G CK++  ++   +FR +   G V + VTY  LI+GL   G 
Sbjct: 316 MVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 375

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ + K++   G  P+ +TY+ ++     N K +  LE+   M++     D + Y T
Sbjct: 376 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 435

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++ +  D    +   GV+ ++V+YNT+I+  C +  L+ AY LL +M++ G
Sbjct: 436 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 495

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D  T+  LI    + G+   +   +  M    F  +      + + L  DG++D +
Sbjct: 496 PLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDKS 553



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 135/309 (43%), Gaps = 39/309 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +L+ + K +  D  + +   +Q+ G    L TYNILI   C+  ++  A  +
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+ +T ++++      ++    + ++  M   GY  D   + T+I     
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +  EA   +++MV  G Q ++V+Y  ++N  CK G ++ A+ LL++ME    E D   
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              +ID LCK  +                                   +D A+N+F+ ME
Sbjct: 188 FNTIIDSLCKYRH-----------------------------------VDDALNLFKEME 212

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    +  TYSS++  LC   R   AS+LL   ++  +        A++D     G   
Sbjct: 213 TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV 272

Query: 304 EAKKIQSKI 312
           EA+K+   +
Sbjct: 273 EAEKLHDDM 281



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 114/245 (46%), Gaps = 4/245 (1%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P+   +  ++    + +K+ L + +   M+R G + + + Y  +I  F +  ++  A   
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           + +M+  G +  IV+ ++L+N YC   ++  A  L+D+M + G+  D  T T LI GL  
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
                 A   ++ M + G   NL  Y  +V+ L K G ID A N+   ME      D   
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           +++++ +LCK + +  A  L       G+R       +++  L   G   +A ++ S + 
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 314 MAKIS 318
             KI+
Sbjct: 248 EKKIN 252



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M++GLC  R    A  + + +++ G +P+  TYN LI+   + G    +  +
Sbjct: 463 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 522

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           ++E+       +A T   +       R  K  L++LS
Sbjct: 523 IREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 559


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 155/309 (50%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T NIM+   CK    D+A      +++ GF P+ VTYN LI G CKAG +  A   
Sbjct: 381 PNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRT 440

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+G      +++T  TI++   R +K +   ++LS+ +++GY  D   Y T+I  + K
Sbjct: 441 MDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A    ++M    +    V+YN +I   C+ GK E A   L+E+ + G   D+ T
Sbjct: 501 DGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETT 560

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++ G C+ G+++ A      M +  F  ++   N ++  L  +G ++ A+ +F +  
Sbjct: 561 YNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWV 620

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D+ TY++++ +LCK  RL  A  LL    +  +        A++  L  SG  R
Sbjct: 621 SKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIR 680

Query: 304 EAKKIQSKI 312
           EA++  SK+
Sbjct: 681 EAEEFMSKM 689



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 156/311 (50%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI++ G CK  +   A  +   + ++  +P++ TYN+LI GLC  GR+  A 
Sbjct: 274 LLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAF 333

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ +    P+ ++Y T++  C    K     ++L  M  KG   +   +  ++  +
Sbjct: 334 KLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWY 393

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++ +A++ + +M   G   D V+YNTLIN YCK G +  A+  +DEM ++  + D 
Sbjct: 394 CKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDS 453

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   ++  LC+   ++ A   L    K G+  +  +Y  ++    KDG +D A+ +++ 
Sbjct: 454 VTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDE 513

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ K+    + TY+ ++  LC+  +   A   L   L+SG+   ++    ++ G    G 
Sbjct: 514 MKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGD 573

Query: 302 RREAKKIQSKI 312
             +A +  +K+
Sbjct: 574 VEKAFQFHNKM 584



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 142/267 (53%), Gaps = 4/267 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +L P   T+N+++NGLC     + A ++   ++    +P++V+YN LI G  +  +
Sbjct: 304 MTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSK 363

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+E+ + G  PNA+T+  ++K   +  K       ++ M+  G++ D   Y T
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNT 423

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G + EA   M++M    +++D V+ NT++   C+E KLE AY LL    K+G
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  D+ ++  LI G  K GN+  A    + M +     +   YNCI+  L + GK + AI
Sbjct: 484 YFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAI 543

Query: 241 N----VFESMEVKDSFTYSSMVHNLCK 263
           +    + ES  + D  TY++++H  C+
Sbjct: 544 SKLNELLESGLLPDETTYNTILHGYCR 570



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 156/317 (49%), Gaps = 6/317 (1%)

Query: 6   LTPCTATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   TFNI++ G C +N++ D A+     + K+   P+ VTYN ++  LCK GRL  A
Sbjct: 204 IVPNVNTFNIVIYGYCLENKFKD-AVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDA 262

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +L ++   G  PN  TY  ++    +    K    ++  M +     D + Y  +I  
Sbjct: 263 RDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLING 322

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               GR++EA    ++M    +  D+VSYNTLIN   +  K+  A+ LL+EM ++G + +
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             TH I++   CK G +  A   +  M + GF  +   YN +++   K G +  A    +
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M  K    DS T ++++  LC+ K+L  A KLL S  K G  I + +   ++ G    G
Sbjct: 443 EMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDG 502

Query: 301 CRREAKKIQSKIRMAKI 317
               A K+  +++  +I
Sbjct: 503 NVDRALKLWDEMKEKEI 519



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 133/274 (48%), Gaps = 11/274 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDN-----ALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           L P   T N +LN L   RY  +     +   F    K G VP + T+NI+I G C   +
Sbjct: 166 LRPNLLTCNTLLNSLV--RYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENK 223

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A   L  +G    +P+ +TY TI+    +  +     ++L  MK +G   +   Y  
Sbjct: 224 FKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNI 283

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K+G LKEA + +E M  + +  D+ +YN LIN  C EG++E A+ L DEME   
Sbjct: 284 LVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLK 343

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  ++  LI+G  +   I  A   LE M++ G   N   +N +V    K+GK+D A 
Sbjct: 344 LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDAS 403

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           N    ME      D  TY+++++  CKA  +  A
Sbjct: 404 NTITKMEESGFSPDCVTYNTLINGYCKAGNMGEA 437



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 142/281 (50%), Gaps = 6/281 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   T+N ++NG CK      A R    + +     + VT N +++ LC+  +L  A 
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAY 473

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L      G+  + ++Y T++   F++      L++   MK K        Y  +I   
Sbjct: 474 KLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGL 533

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+ ++A   + +++  G+  D  +YNT+++ YC+EG +E A+   ++M +  F+ D 
Sbjct: 534 CQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDV 593

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +T  IL+ GLC  G ++ A +L   +++K G   +   YN ++  L K+G++D A N+  
Sbjct: 594 FTCNILLRGLCMEGMLEKALKLFNTWVSK-GKAIDTVTYNTLITSLCKEGRLDDAFNLLS 652

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            ME K    D +TY++++  L  + R+  A + +   L+ G
Sbjct: 653 EMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 136/298 (45%), Gaps = 10/298 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++ G  K+   D AL+++  +++   +P  VTYN +I GLC+ G+   A   L E
Sbjct: 489 VSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNE 548

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           L +SG  P+  TY TI+    R    +   +  + M    +  D F    ++      G 
Sbjct: 549 LLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGM 608

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L++A       V+ G  +D V+YNTLI   CKEG+L+ A+ LL EME++    D YT+  
Sbjct: 609 LEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNA 668

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           +I  L  +G I+ A    E+M+K+     LE        L  D       +         
Sbjct: 669 IITALTDSGRIREAE---EFMSKM-----LEKGXLPXQVLQLDXNETVVTSETSEESDSS 720

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL--RHSGCRREAK 306
           S  YS  +  LC   +   A ++     + G+ + KS    ++DGL  R     +EA+
Sbjct: 721 SVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRKSISKEAR 778



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 58/251 (23%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY---------------- 48
           ++ P T T+N ++ GLC+   T+ A+     L + G +P+  TY                
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKA 577

Query: 49  -------------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
                              NIL++GLC  G L  A  +       G A + +TY T++  
Sbjct: 578 FQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITS 637

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG---- 145
             +  +      +LS M+ K    D + Y  +I A    GR++EA ++M +M+  G    
Sbjct: 638 LCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPX 697

Query: 146 --VQLD-----------------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             +QLD                  V+Y+  I   C EGK + A  +  E +++G   DK 
Sbjct: 698 QVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKS 757

Query: 187 THTILIDGLCK 197
           T+  L+DGL K
Sbjct: 758 TYINLMDGLIK 768



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 87/223 (39%), Gaps = 47/223 (21%)

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM----------- 141
           +R++ L L IL          D     T I A+V+ G+   A    ++M           
Sbjct: 118 DRRHDLHLSILRLTSPSKALLD-----TAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLT 172

Query: 142 -----------------------VTDGVQLDIV----SYNTLINLYCKEGKLEAAYLLLD 174
                                    D ++L IV    ++N +I  YC E K + A   L+
Sbjct: 173 CNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLN 232

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            M K     D  T+  ++D LCK G +  AR  L  M   G   N   YN +V    K G
Sbjct: 233 VMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMG 292

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            +  A NV E M     + D +TY+ +++ LC   R+  A KL
Sbjct: 293 WLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 132/262 (50%), Gaps = 4/262 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   ++ GLC  R  +  L M + +++ G+ P    Y  L+   C+  +   A  +
Sbjct: 228 PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKM 287

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+ D+G  P A+T T ++    R  +    + +  +MK KG   + + Y  ++  F  
Sbjct: 288 LNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCN 347

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G++ +A   ++QM   GV+ D+V+YN LI   C +G +E+A+ LL  ME  G   D+YT
Sbjct: 348 VGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYT 407

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + +LID LCK G +  A    + +   G   N   +N +++ L K GK D A    E M 
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMV 467

Query: 248 ----VKDSFTYSSMVHNLCKAK 265
                 D++TYS  + NLCK K
Sbjct: 468 SAGCAPDTYTYSPFIENLCKTK 489



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 145/302 (48%), Gaps = 10/302 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L PC  T   ++N  C+      A+R+F  ++  G  P + TYN +++G C  G+
Sbjct: 291 MFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGK 350

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++ + G  P+ +TY  +++    +   +    +L  M+  G   D + Y  
Sbjct: 351 VYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNV 410

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K G++ EA    + +   G++ + V++NT+IN  CK GK + A   L++M   G
Sbjct: 411 LIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAG 470

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKID 237
              D YT++  I+ LCK    KG+R  L +++++       +   Y  ++DRL K+    
Sbjct: 471 CAPDTYTYSPFIENLCKT---KGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYG 527

Query: 238 HAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            A  ++  M       D  TY++ V   C   RL  A  +++   K G+ +   A   ++
Sbjct: 528 LATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLI 587

Query: 294 DG 295
           DG
Sbjct: 588 DG 589



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 8/300 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFN ++ G C+ +  D A  +F  +   GF  + V+Y  LI+G C+ GR
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGR 214

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +EL      P+  T+  ++K     R+ + GL +L  MK  G+      Y  
Sbjct: 215 VDEALELFREL----EQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAA 270

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + +  + +EA   + +M  +G+    V+   ++N YC+EG++  A  + + M+ +G
Sbjct: 271 LVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKG 330

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E + +T+  ++ G C  G +  A   L+ M + G + ++  YN ++     DG I+ A 
Sbjct: 331 CEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAF 390

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME      D +TY+ ++  LCK  ++  A  L       G+R        V++GL
Sbjct: 391 RLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 132/273 (48%), Gaps = 10/273 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N++++ LCK    D A  +F GL+  G  P  VT+N +I GLCK G+   A   L+++
Sbjct: 407 TYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKM 466

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G AP+  TY+  ++   + +  + GL  +  M +K        Y  VI    K    
Sbjct: 467 VSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNY 526

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             AT    QMV+ G   D+V+Y T +  YC EG+L  A  ++ EM+K G   D   +  L
Sbjct: 527 GLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTL 586

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSN-----LEAYNCIVDRLGKDGKIDHAINVFESM 246
           IDG    G    A   L++M  +    N     +   + +  RL +D  +    +V++++
Sbjct: 587 IDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPL-KTTSVWKTI 645

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           E+ D F     +  L K   +PS+++  L+ L+
Sbjct: 646 ELADVFE----LFELMKKNSVPSSARAYLAILE 674



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 142/330 (43%), Gaps = 36/330 (10%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARWILKE 70
           TF  +L    +   T   LR+F  +  HG   P   TYN LI+ LC+   LR A+  L  
Sbjct: 95  TFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSL 154

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  SG  P+A T+ +++    R ++  +  ++   M  +G++ D   Y  +I  F + GR
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGR 214

Query: 131 LKEATD------------------------------YMEQMVTD-GVQLDIVSYNTLINL 159
           + EA +                              YM Q + + G +    +Y  L++L
Sbjct: 215 VDEALELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDL 274

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +C+E K E A  +L+EM   G      T T +++  C+ G + GA    E M   G + N
Sbjct: 275 WCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPN 334

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
           +  YN +V      GK+  A+ + + M       D  TY+ ++   C    + SA +LL 
Sbjct: 335 VWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLR 394

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               +G+   +     ++D L  +G   EA
Sbjct: 395 LMEGNGLAADQYTYNVLIDALCKTGKVDEA 424



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 5/256 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG + P   T+N+++ G C + + ++A R+ R ++ +G   +  TYN+LI  LCK G++ 
Sbjct: 364 CG-VEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVD 422

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +   L   G  PN++T+ T++    +  K+ +    L  M   G   D + Y   I
Sbjct: 423 EACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFI 482

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K    +E   ++++M+   V+   V+Y  +I+   KE     A  +  +M   G  
Sbjct: 483 ENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCS 542

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+T  +   C  G +  A   +  M K G   +  AYN ++D     GK DHA+ +
Sbjct: 543 PDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTI 602

Query: 243 FESM----EVKDSFTY 254
            + M     + + FT+
Sbjct: 603 LKHMTGVASMPNHFTF 618



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 36/232 (15%)

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-GFGYCTVIAAFVKIGRLKEATDYMEQ 140
           T+ +++    R     L L + + M   G     G  Y  +I A  +   L+ A  Y+  
Sbjct: 95  TFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSL 154

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           MV  G + D  ++N+LI  YC+  +L+ A  L D+M  +GF  D  ++  LI+G C+   
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCET-- 212

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHN 260
                                            G++D A+ +F  +E  D +T++++V  
Sbjct: 213 ---------------------------------GRVDEALELFRELEQPDMYTHAALVKG 239

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           LC A+R      +L    + G R    A  A+VD         EA+K+ +++
Sbjct: 240 LCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEM 291



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 126/333 (37%), Gaps = 55/333 (16%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P T T++  +  LCK + +   L     + +    P  V Y I+I  L K   
Sbjct: 466 MVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERN 525

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  I  ++   G +P+ +TYTT ++                             YC 
Sbjct: 526 YGLATRIWGQMVSLGCSPDVVTYTTSVR----------------------------AYCN 557

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                   GRL EA + + +M   G+ +D ++YNTLI+ +   GK + A  +L  M    
Sbjct: 558 E-------GRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVA 610

Query: 181 FECDKYTHTIL----------------IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
              + +T  IL                   + K   +       E M K    S+  AY 
Sbjct: 611 SMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYL 670

Query: 225 CIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            I++   ++ ++D   ++   M+  D       Y+S+V+  CK +  P A  LL S +  
Sbjct: 671 AILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGH 730

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           G      + + ++ G    G    AK+I   +R
Sbjct: 731 GFLPNLISYQYLLSGFTAEGQADRAKEIFRGLR 763



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/276 (19%), Positives = 92/276 (33%), Gaps = 51/276 (18%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+   +   C       A  +   ++K G + + + YN LI G    G+   A  
Sbjct: 542 SPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVT 601

Query: 67  ILKELGDSGHAPNAITY--------------TTIMKCCFRNRKYKLG--LEILSAMKRKG 110
           ILK +      PN  T+                 +K     +  +L    E+   MK+  
Sbjct: 602 ILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKKNS 661

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
                  Y  ++  F +  RL E T  +  M  D + L+   Y +L+N +CK      A+
Sbjct: 662 VPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAW 721

Query: 171 LLLDEMEKQGF-----------------------------------ECDKYTHTILIDGL 195
            LL  M   GF                                     D+    I+IDGL
Sbjct: 722 ALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGL 781

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
            + G+       +  + ++    + E Y  + + L 
Sbjct: 782 IRQGHPDMCHDMISILEQMKCKPSDETYAMLTEELS 817


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 151/315 (47%), Gaps = 22/315 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P T+T++ ++  LC     + A  +F+ ++  G  P++ TY ILI   CKAG +  A+
Sbjct: 453 FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQ 512

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+ +E+   G +P  +TYT ++    + ++     +I   M   G   +   Y  ++   
Sbjct: 513 WLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGL 572

Query: 126 VKIGRLKEATDYMEQMV--TDGVQLD--------------IVSYNTLINLYCKEGKLEAA 169
            K G + +A +   +++  +D    D              +V+Y  L++  CK  K++ A
Sbjct: 573 CKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHA 632

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           + LLD M   G E +   +  LIDG CKAG I  A+     M K G+  ++  Y  ++DR
Sbjct: 633 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDR 692

Query: 230 LGKDGKIDHAINVFESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
           + KDG++D A+ V   M +KDS      TY++M+  LC+      A KLL    + G   
Sbjct: 693 MFKDGRLDLAMKVLSQM-LKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 751

Query: 285 LKSAQKAVVDGLRHS 299
                 A++DGL  S
Sbjct: 752 NVVTYTALIDGLGQS 766



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 10/307 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           M++GL +  Y D A+     ++ +  +P +VTY  L+ G  K  +L   + I+  +   G
Sbjct: 282 MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 341

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             PN   + +++      + Y    ++L+ M   G       Y   I +     +L    
Sbjct: 342 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 401

Query: 136 --DYME----QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             D  E    +M+     L+ V+        C  GK + A+ L+ EM ++GF  D  T++
Sbjct: 402 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYS 461

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            +I  LC A  ++ A L  + M  +G   ++  Y  ++D   K G I+ A  +FE M   
Sbjct: 462 KVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSV 521

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                  TY++++H   KAK++P A+ +    + +G R       A+VDGL  +G   +A
Sbjct: 522 GCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKA 581

Query: 306 KKIQSKI 312
            ++ +K+
Sbjct: 582 FEVYAKL 588



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 140/336 (41%), Gaps = 27/336 (8%)

Query: 3   CGDLTPCTATFNIMLNGLCKNR------YTDNALRMFRGLQKHGFVPELVTYNILIKGLC 56
           CG   P    +NI +  +C           D A +++  +     V   V      + LC
Sbjct: 375 CG-CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLC 433

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
             G+   A  ++KE+   G  P+  TY+ ++       K +    +   MK  G T D +
Sbjct: 434 GVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 493

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  +I +F K G +++A    E+M + G    +V+Y  LI+ Y K  ++  A  +   M
Sbjct: 494 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 553

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGA----------------RLHLEYMNKIGFDSNL 220
              G   +  T+  L+DGLCKAGNI  A                  +    ++     N+
Sbjct: 554 VDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNV 613

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLS 276
             Y  +VD L K  K+DHA  + ++M       +   Y +++   CKA ++ SA ++ L 
Sbjct: 614 VTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQ 673

Query: 277 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             K G         +++D +   G    A K+ S++
Sbjct: 674 MTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM 709



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 110/280 (39%), Gaps = 10/280 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C    P   T+  +L+G  K +      R+   +   G  P    +N L+   C    
Sbjct: 302 MRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKD 361

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK------LGLEILSAMKRKGYTFD 114
              A  +L  +   G  P  + Y   +       K        L  +I   M       +
Sbjct: 362 YAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLN 421

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
                        +G+  +A   +++M+  G   D  +Y+ +I   C   K+E A+LL  
Sbjct: 422 KVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQ 481

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           EM+  G   D YT+TILID  CKAG I+ A+   E M  +G    +  Y  ++    K  
Sbjct: 482 EMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAK 541

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           ++  A ++F  M       +  TY ++V  LCKA  +  A
Sbjct: 542 QVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKA 581



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 16/211 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL----------------QKHGFVPE 44
           M+     P   T+  +++GLCK      A  ++  L                 +H   P 
Sbjct: 553 MVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPN 612

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +VTY  L+ GLCKA ++  A  +L  +  SG  PN I Y  ++    +  K     E+  
Sbjct: 613 VVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFL 672

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            M + GY      Y ++I    K GRL  A   + QM+ D    ++V+Y  +I+  C+ G
Sbjct: 673 QMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIG 732

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + E A  LL  ME++G   +  T+T LIDGL
Sbjct: 733 ESEKALKLLSLMEEKGCSPNVVTYTALIDGL 763



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 135/346 (39%), Gaps = 48/346 (13%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C+    + AL     L+  G+ P  VTYN L++ L  AG++     + KE+ 
Sbjct: 177 LNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMS 236

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLE----------------ILSAMKRKGYTFDGF 116
           +SG   +  T         +  ++   L+                ++S +    Y  +  
Sbjct: 237 ESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAM 296

Query: 117 G----------------YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
                            Y T+++ F+K  +L      +  M+T+G   +   +N+L++ Y
Sbjct: 297 SFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSY 356

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           C E     AY LL+ M   G       + I I  +C    +    L L+   KI     +
Sbjct: 357 CNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDL-LDLAEKIY--GEM 413

Query: 221 EAYNCIVDRLGKD---------GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            A NC+++++            GK D A  + + M     V D+ TYS ++  LC A ++
Sbjct: 414 LAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKV 473

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             A  L       GV         ++D    +G   +A+ +  ++R
Sbjct: 474 EKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMR 519



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 7/231 (3%)

Query: 48  YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
           Y+ L   L   GR R A  +L+E+G+            +++ C R   +   LE L  +K
Sbjct: 142 YDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLK 201

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
             GY      Y  ++      G++       ++M   G  +D  +     +  CKEG+  
Sbjct: 202 DFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWA 261

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            A   LD +E++ F+ D    T +I GL +A     A   L  M       N+  Y  ++
Sbjct: 262 DA---LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLL 318

Query: 228 DRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
               K  ++     +   M  +    +   ++S+VH+ C  K    A KLL
Sbjct: 319 SGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 369


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 155/309 (50%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T NIM+   CK    D+A      +++ GF P+ VTYN LI G CKAG +  A   
Sbjct: 381 PNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRT 440

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+G      +++T  TI++   R +K +   ++LS+ +++GY  D   Y T+I  + K
Sbjct: 441 MDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A    ++M    +    V+YN +I   C+ GK E A   L+E+ + G   D+ T
Sbjct: 501 DGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETT 560

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++ G C+ G+++ A      M +  F  ++   N ++  L  +G ++ A+ +F +  
Sbjct: 561 YNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWV 620

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D+ TY++++ +LCK  RL  A  LL    +  +        A++  L  SG  R
Sbjct: 621 SKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIR 680

Query: 304 EAKKIQSKI 312
           EA++  SK+
Sbjct: 681 EAEEFMSKM 689



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 156/311 (50%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI++ G CK  +   A  +   + ++  +P++ TYN+LI GLC  GR+  A 
Sbjct: 274 LLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAF 333

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ +    P+ ++Y T++  C    K     ++L  M  KG   +   +  ++  +
Sbjct: 334 KLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWY 393

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++ +A++ + +M   G   D V+YNTLIN YCK G +  A+  +DEM ++  + D 
Sbjct: 394 CKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDS 453

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   ++  LC+   ++ A   L    K G+  +  +Y  ++    KDG +D A+ +++ 
Sbjct: 454 VTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDE 513

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ K+    + TY+ ++  LC+  +   A   L   L+SG+   ++    ++ G    G 
Sbjct: 514 MKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGD 573

Query: 302 RREAKKIQSKI 312
             +A +  +K+
Sbjct: 574 VEKAFQFHNKM 584



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 142/267 (53%), Gaps = 4/267 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +L P   T+N+++NGLC     + A ++   ++    +P++V+YN LI G  +  +
Sbjct: 304 MTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSK 363

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+E+ + G  PNA+T+  ++K   +  K       ++ M+  G++ D   Y T
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNT 423

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G + EA   M++M    +++D V+ NT++   C+E KLE AY LL    K+G
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  D+ ++  LI G  K GN+  A    + M +     +   YNCI+  L + GK + AI
Sbjct: 484 YFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAI 543

Query: 241 N----VFESMEVKDSFTYSSMVHNLCK 263
           +    + ES  + D  TY++++H  C+
Sbjct: 544 SKLNELLESGLLPDETTYNTILHGYCR 570



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 156/317 (49%), Gaps = 6/317 (1%)

Query: 6   LTPCTATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   TFNI++ G C +N++ D A+     + K+   P+ VTYN ++  LCK GRL  A
Sbjct: 204 IVPNVNTFNIVIYGYCLENKFKD-AVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDA 262

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +L ++   G  PN  TY  ++    +    K    ++  M +     D + Y  +I  
Sbjct: 263 RDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLING 322

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               GR++EA    ++M    +  D+VSYNTLIN   +  K+  A+ LL+EM ++G + +
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             TH I++   CK G +  A   +  M + GF  +   YN +++   K G +  A    +
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M  K    DS T ++++  LC+ K+L  A KLL S  K G  I + +   ++ G    G
Sbjct: 443 EMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDG 502

Query: 301 CRREAKKIQSKIRMAKI 317
               A K+  +++  +I
Sbjct: 503 NVDRALKLWDEMKEKEI 519



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 148/317 (46%), Gaps = 11/317 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDN-----ALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           L P   T N +LN L   RY  +     +   F    K G VP + T+NI+I G C   +
Sbjct: 166 LRPNLLTCNTLLNSLV--RYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENK 223

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A   L  +G    +P+ +TY TI+    +  +     ++L  MK +G   +   Y  
Sbjct: 224 FKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNI 283

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K+G LKEA + +E M  + +  D+ +YN LIN  C EG++E A+ L DEME   
Sbjct: 284 LVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLK 343

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  ++  LI+G  +   I  A   LE M++ G   N   +N +V    K+GK+D A 
Sbjct: 344 LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDAS 403

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           N    ME      D  TY+++++  CKA  +  A + +    +  +++       ++  L
Sbjct: 404 NTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTL 463

Query: 297 RHSGCRREAKKIQSKIR 313
                  EA K+ S  R
Sbjct: 464 CREKKLEEAYKLLSSAR 480



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 142/281 (50%), Gaps = 6/281 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   T+N ++NG CK      A R    + +     + VT N +++ LC+  +L  A 
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAY 473

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L      G+  + ++Y T++   F++      L++   MK K        Y  +I   
Sbjct: 474 KLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGL 533

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+ ++A   + +++  G+  D  +YNT+++ YC+EG +E A+   ++M +  F+ D 
Sbjct: 534 CQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDV 593

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +T  IL+ GLC  G ++ A +L   +++K G   +   YN ++  L K+G++D A N+  
Sbjct: 594 FTCNILLRGLCMEGVLEKALKLFNTWVSK-GKAIDTVTYNTLITSLCKEGRLDDAFNLLS 652

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            ME K    D +TY++++  L  + R+  A + +   L+ G
Sbjct: 653 EMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 137/298 (45%), Gaps = 10/298 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++ G  K+   D AL+++  +++   +P  VTYN +I GLC+ G+   A   L E
Sbjct: 489 VSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNE 548

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           L +SG  P+  TY TI+    R    +   +  + M    +  D F    ++      G 
Sbjct: 549 LLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGV 608

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L++A       V+ G  +D V+YNTLI   CKEG+L+ A+ LL EME++    D YT+  
Sbjct: 609 LEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNA 668

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           +I  L  +G I+ A    E+M+K+     LE  N     L  D       +         
Sbjct: 669 IITALTDSGRIREAE---EFMSKM-----LEKGNLPDQVLQLDKNETVVTSETSEESDSS 720

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL--RHSGCRREAK 306
           S  YS  +  LC   +   A ++     + G+ + KS    ++DGL  R     +EA+
Sbjct: 721 SVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRKSISKEAR 778



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 58/251 (23%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY---------------- 48
           ++ P T T+N ++ GLC+   T+ A+     L + G +P+  TY                
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKA 577

Query: 49  -------------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
                              NIL++GLC  G L  A  +       G A + +TY T++  
Sbjct: 578 FQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITS 637

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG---- 145
             +  +      +LS M+ K    D + Y  +I A    GR++EA ++M +M+  G    
Sbjct: 638 LCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPD 697

Query: 146 --VQLD-----------------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             +QLD                  V+Y+  I   C EGK + A  +  E +++G   DK 
Sbjct: 698 QVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKS 757

Query: 187 THTILIDGLCK 197
           T+  L+DGL K
Sbjct: 758 TYINLMDGLIK 768



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 87/223 (39%), Gaps = 47/223 (21%)

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM----------- 141
           +R++ L L IL          D     T I A+V+ G+   A    ++M           
Sbjct: 118 DRRHDLHLSILRLTSPSKALLD-----TAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLT 172

Query: 142 -----------------------VTDGVQLDIV----SYNTLINLYCKEGKLEAAYLLLD 174
                                    D ++L IV    ++N +I  YC E K + A   L+
Sbjct: 173 CNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLN 232

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            M K     D  T+  ++D LCK G +  AR  L  M   G   N   YN +V    K G
Sbjct: 233 VMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMG 292

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            +  A NV E M     + D +TY+ +++ LC   R+  A KL
Sbjct: 293 WLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 153/322 (47%), Gaps = 4/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N M++G  K    +   R+   + + G  P +VTYN+L+ GLC+AGR
Sbjct: 221 MVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGR 280

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   R ++ E+      P+  TY+ +     R    +  L +     +KG     +    
Sbjct: 281 MDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSI 340

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G++ +A   +E +V  G+      YNTLIN YC+   L+ A+ + ++M+ + 
Sbjct: 341 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH 400

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI+GLCK   I  A   +  M K G D ++E +N ++D  G+ G+++   
Sbjct: 401 IRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCF 460

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   M+ K    +  ++ S+V   CK  ++P A  +L   +   V        +++D  
Sbjct: 461 TVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAY 520

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
             SG   +A  +  K++ + +S
Sbjct: 521 IESGGTEQAFLLVEKMKSSGVS 542



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 135/266 (50%), Gaps = 4/266 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P TA +N ++NG C+ R    A  +F  ++     P+ +TYN LI GLCK   +  A 
Sbjct: 366 LVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAE 425

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+  SG  P+  T+ T++    R  + +    +LS M+ KG   +   + +V+ AF
Sbjct: 426 DLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAF 485

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++ EA   ++ M+   V  +   YN++I+ Y + G  E A+LL+++M+  G     
Sbjct: 486 CKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASI 545

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+ +L+ GLCK   I  A   +  +   G   ++ +YN I+      G  D A+ + + 
Sbjct: 546 FTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQE 605

Query: 246 M---EVKDSF-TYSSMVHNLCKAKRL 267
           M   +++ +  TY  ++  L  A R+
Sbjct: 606 MHKYDIRPTLRTYHPLLSALGSAGRV 631



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 138/306 (45%), Gaps = 6/306 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFR--GLQKHGFVPELVTYNILIKGLCKA 58
           ++     P T  +N  +         D AL M R  G  +    P+  +YN++I GL ++
Sbjct: 149 LVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRS 208

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           G+   A  +  E+ D G APN ITY T++    +    + G  +   M + G   +   Y
Sbjct: 209 GKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTY 268

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +++   + GR+ E    M++M +  +  D  +Y+ L +   + G       L  E  K
Sbjct: 269 NVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLK 328

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G     YT +IL++GLCK G +  A   LE +   G       YN +++   +   +  
Sbjct: 329 KGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQG 388

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A ++FE M+ +    D  TY+++++ LCK + +  A  L++   KSGV         ++D
Sbjct: 389 AFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLID 448

Query: 295 GLRHSG 300
               +G
Sbjct: 449 AYGRAG 454



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 126/260 (48%), Gaps = 6/260 (2%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
           +P L + N+L++ L   GR    R     L  +G  P+   +   ++ C         L 
Sbjct: 120 LPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALA 179

Query: 102 ILSAMKRK--GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           +L  M R       D F Y  VIA   + G+  +A    ++MV  GV  + ++YNT+I+ 
Sbjct: 180 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDG 239

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           + K G LEA + L D+M + G + +  T+ +L+ GLC+AG +   R  ++ M       +
Sbjct: 240 HVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPD 299

Query: 220 LEAYNCIVDRLGKDGKIDHAINVF-ESME---VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y+ + D L + G     +++F ES++   +  ++T S +++ LCK  ++  A ++L 
Sbjct: 300 GFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLE 359

Query: 276 SCLKSGVRILKSAQKAVVDG 295
             + +G+    +    +++G
Sbjct: 360 MLVHTGLVPTTAIYNTLING 379



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 4/189 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D+ P    +N +++   ++  T+ A  +   ++  G    + TYN+L+KGLCK  +
Sbjct: 501 MIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQ 560

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++  L + G  P+ ++Y TI+  C         LE+L  M +         Y  
Sbjct: 561 IDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHP 620

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY----LLLDEM 176
           +++A    GR+ +     + MV   V+     Y T      K   L+       +  D+ 
Sbjct: 621 LLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKVASLKKEMSEKGIAFDDT 680

Query: 177 EKQGFECDK 185
           E+   E D+
Sbjct: 681 ERTNLELDR 689


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 161/348 (46%), Gaps = 41/348 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +  P   T+  ++NGLCKN     A R+F  L+  G+ P+ V Y  +I GLC+ G 
Sbjct: 289 MIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGS 348

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR +  E+ D G  PNA TY T++    ++  ++   E+ + M  KGY         
Sbjct: 349 FGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNK 408

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL-------------- 166
           +I+     G+  EA +  ++M   G+Q D ++YN+LI  +CKEGK+              
Sbjct: 409 IISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQD 468

Query: 167 ---------------------EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                                EAA  LL +M  +G   + YT+  ++ G  K+G+ +  R
Sbjct: 469 PQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVR 528

Query: 206 -LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHN 260
            L+ E  NK G+ +     N I+  L   GK D A  +F+ M       D+ TY+S++  
Sbjct: 529 ELYNETCNK-GYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRG 587

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            CK  ++  +  LL   +  G++   S+  +++  L  +G    AK++
Sbjct: 588 FCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRL 635



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 114/269 (42%), Gaps = 4/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T   ++   C +        +     K G  P   TYN LI G C+A    +   +L 
Sbjct: 228 TETVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLH 287

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +    H P   TY  I+    +N +      + + +K +GY  D   Y T+I    ++G
Sbjct: 288 TMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMG 347

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
              EA     +M+  G+Q +  +YNT+++   K G  E A  L +EM  +G+     T  
Sbjct: 348 SFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCN 407

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            +I  LC  G    A    + M++ G  ++   YN ++    K+GK+D  +N+   +  +
Sbjct: 408 KIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQ 467

Query: 250 DSFT----YSSMVHNLCKAKRLPSASKLL 274
           D       Y  ++   CK     +A +LL
Sbjct: 468 DPQPSVSLYELLIIKSCKDGDFEAAKRLL 496



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 134/295 (45%), Gaps = 6/295 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T N +++ LC    +D A  +F+ + + G   + +TYN LI+G CK G++     +L 
Sbjct: 403 TVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLN 462

Query: 70  ELGDSGHAPNAITYT-TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           EL      P+   Y   I+K C ++  ++    +L  M  KG   + + Y T++   +K 
Sbjct: 463 ELVAQDPQPSVSLYELLIIKSC-KDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKS 521

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G  +   +   +    G      + N +I+  C  GK + A  +  +M + G + D  T+
Sbjct: 522 GDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITY 581

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
             LI G CK G +  +   L  +   G   +  +Y  ++ +L ++G  + A  ++  M  
Sbjct: 582 NSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVS 641

Query: 249 KDSFTYSS----MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           K    +++    ++  LCK  R       L+  L++ ++  K+A + + + L  S
Sbjct: 642 KGIEPHANLREHLISGLCKQGRATEGMDRLMGMLENKIKPKKAAFEDLAECLIQS 696



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 128/347 (36%), Gaps = 81/347 (23%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D TP   + N++   L   +    A +M R +   GF+P+  +    +K LC  G +  A
Sbjct: 119 DCTPDPISSNMLFEALLDAKAV-RAAKMVRDIA--GFIPDSASLEQYVKCLCGVGFIEEA 175

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL-------------------------- 98
             +  +L ++G   + +   +I+  C +  K +L                          
Sbjct: 176 IEVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGCLI 235

Query: 99  -----------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
                      G E+L+   + G       Y  +IA F +       ++ +  M+     
Sbjct: 236 QAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHL 295

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR-L 206
             I +Y  +IN  CK  +   AY + ++++ +G+  D+  +T +I GLC+ G+   AR L
Sbjct: 296 PTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKL 355

Query: 207 HLEYMNKIGFDSNLEAYNC-----------------------------------IVDRLG 231
             E M+K G   N   YN                                    I+  L 
Sbjct: 356 WFEMMDK-GMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELC 414

Query: 232 KDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             GK D A  VF+ M       D+ TY+S++   CK  ++     LL
Sbjct: 415 SRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLL 461


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 157/307 (51%), Gaps = 8/307 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           ++FN +L+ LCK++  + A  +F+ L K  F  + V+YNI++ G C   R   A  +LKE
Sbjct: 163 SSFNTILDVLCKSKRVEMAYNLFKAL-KGKFKADCVSYNIIVNGWCLIKRTPKALEMLKE 221

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + + G  PN  TY  ++   FR  +          MK++    D   Y +VI     +G 
Sbjct: 222 MVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGE 281

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +K A +   QMV DGV   + ++N LI + CK+  +E A L+ +EM K+G+  +  T+ +
Sbjct: 282 IKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNL 341

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           +I GLC  G ++ A   +E M     + N++ YN ++      G+I+  +++F+ M   D
Sbjct: 342 VIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGD 401

Query: 251 SF----TYSSMVHNLCKAK---RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 TY+ +++++   K    L  A KLL+  +  G    K     V+DGL  +G + 
Sbjct: 402 CLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQD 461

Query: 304 EAKKIQS 310
            AK+I S
Sbjct: 462 FAKEILS 468



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 5/243 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+NIMLNG  +   T+ A   F  ++K     ++VTY  +I GL   G 
Sbjct: 222 MVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGE 281

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ AR +  ++   G  P+  T+  +++   +    +  + I   M ++GY  +   Y  
Sbjct: 282 IKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNL 341

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI     +G ++ A + ME+M  D  + ++ +YN LI  +C  G++E    L  +M    
Sbjct: 342 VIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGD 401

Query: 181 FECDKYTHTILIDGLCKAGN----IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
              +  T+ ILI+ +    N    +   +L +E +++ GF      +N ++D L   G  
Sbjct: 402 CLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDR-GFLPRKLTFNRVLDGLLLTGNQ 460

Query: 237 DHA 239
           D A
Sbjct: 461 DFA 463



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 125/290 (43%), Gaps = 8/290 (2%)

Query: 29  ALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           AL  F+ L  H  +  +  +++  I    +    RT  +++  +      P+  T+  I 
Sbjct: 75  ALHFFKILSHHPSYCHQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIA 134

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           +      K    + +  +M   G   D   + T++    K  R++ A +  + +     +
Sbjct: 135 ERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKAL-KGKFK 193

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D VSYN ++N +C   +   A  +L EM ++G   +  T+ I+++G  +AG    A   
Sbjct: 194 ADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGF 253

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLC 262
              M K   D ++  Y  ++  LG  G+I  A NVF  M VKD       T+++++  LC
Sbjct: 254 FLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQM-VKDGVLPSVATFNALIQILC 312

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           K   + +A  +    +K G          V+ GL H G  + A ++  ++
Sbjct: 313 KKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERM 362



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNAL---RMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           GD  P   T+NI++N +   + +DN L   ++   +   GF+P  +T+N ++ GL   G 
Sbjct: 400 GDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGN 459

Query: 61  LRTARWILKELGDSGHAP 78
              A+ IL   G  G  P
Sbjct: 460 QDFAKEILSLQGGCGRLP 477


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 140/270 (51%), Gaps = 4/270 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN+++NGLCK      A ++   +   G +P  VTYN LI GLC  G+L  A  +
Sbjct: 267 PSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISL 326

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  S   PN +TY TI+    +  +   G  +L+ M+ +GY  + + Y T+I+   K
Sbjct: 327 LDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFK 386

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +EA    ++M   G +L+ + Y+ +I+  C++GK + A  +L EM  +G   + YT
Sbjct: 387 EGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYT 446

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + L+ G  +AGN   A    + M K  F  N   Y+ ++  L KDGK+  A+ V+  M 
Sbjct: 447 CSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQML 506

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKL 273
            K    D   YSSM++ L  A  +  A +L
Sbjct: 507 GKGCKPDVVAYSSMINGLSIAGLVEDAMQL 536



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 162/346 (46%), Gaps = 39/346 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   TFN+++  +CK    D+A+++FR +      P++ TY  L+ GLCKA R+  A 
Sbjct: 195 ISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAV 254

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+   G  P+ +T+  ++    +        +++  M  KG   +   Y T+I   
Sbjct: 255 SLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGL 314

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+L++A   +++MV+     ++V+Y T+IN   K+G+      +L  ME++G+  ++
Sbjct: 315 CLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNE 374

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           Y ++ LI GL K G  + A    + M   G++ N   Y+ ++D L +DGK D A+ V   
Sbjct: 375 YVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSE 434

Query: 246 ME----------------------------------VKDSFT-----YSSMVHNLCKAKR 266
           M                                    K +FT     YS ++H LCK  +
Sbjct: 435 MTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGK 494

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  A  +    L  G +    A  ++++GL  +G   +A ++ +++
Sbjct: 495 VKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEM 540



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 127/297 (42%), Gaps = 55/297 (18%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            ++ +++GL K   +  A+ +F+ +   G+    + Y+ +I GLC+ G+   A  +L E+
Sbjct: 376 VYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEM 435

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PNA T +++MK  F        +E+   M +  +T +   Y  +I    K G++
Sbjct: 436 TNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKV 495

Query: 132 KEATDYMEQM------------------------VTDGVQL-------------DIVSYN 154
           KEA     QM                        V D +QL             D+V+YN
Sbjct: 496 KEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYN 555

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
            L+N  CK+  +  A  LL+ M  +G + D  T TI +            R+  E ++  
Sbjct: 556 ILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFL------------RMLREKLDPP 603

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
                 E  + +V RL K  ++  A  + E M  K       T++ +V NLCK K++
Sbjct: 604 --QDGREFLDELVVRLLKRQRVLGASKIVEVMLQKLLPPKHSTWARVVENLCKPKKV 658



 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 1   MIC--GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL-CK 57
           M+C   D  P   T+NI+LN LCK      A+ +   +   G  P+LVT  I ++ L  K
Sbjct: 540 MLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREK 599

Query: 58  AGRLRTARWILKEL 71
               +  R  L EL
Sbjct: 600 LDPPQDGREFLDEL 613


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 148/289 (51%), Gaps = 14/289 (4%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           A+FN +L+ LCK++  + A  +FR L+   F  + VTYN+++ G C   R   A  +LKE
Sbjct: 162 ASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKE 220

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + + G  PN  TY T++K  FR  + +   E    MK++    D   Y TV+  F   G 
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 280

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +K A +  ++M+ +GV   + +YN +I + CK+  +E A ++ +EM ++G+E +  T+ +
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           LI GL  AG        ++ M   G + N + YN ++    +  +++ A+ +FE M   D
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400

Query: 251 SF----TYSSMVHNLCKAKRLPS---------ASKLLLSCLKSGVRILK 286
                 TY+ ++  +   KR            A ++L    KSG R+L+
Sbjct: 401 CLPNLDTYNILISGMFVRKRSEDMVVAGNQAFAKEILRLQSKSGSRLLR 449



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ML G  +     +A   F  ++K     ++VTY  ++ G   AG 
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 280

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ AR +  E+   G  P+  TY  +++   +    +  + +   M R+GY  +   Y  
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G      + M++M  +G + +  +YN +I  Y +  ++E A  L ++M    
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400

Query: 181 FECDKYTHTILIDGL 195
              +  T+ ILI G+
Sbjct: 401 CLPNLDTYNILISGM 415



 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 35/130 (26%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY------------ 48
           MI   + P  AT+N M+  LCK    +NA+ MF  + + G+ P + TY            
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350

Query: 49  -----------------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                                  N++I+   +   +  A  + +++G     PN  TY  
Sbjct: 351 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNI 410

Query: 86  IMKCCFRNRK 95
           ++   F  ++
Sbjct: 411 LISGMFVRKR 420


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 119/227 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +   G  P++ TY+ILI GLCK G+L  A 
Sbjct: 167 LRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N K  L +EI   M  +G + D   Y T+I   
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+  D +++M+ +G++ D +SY TLI+  CKEG LE A  L ++M ++    D 
Sbjct: 287 CKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
             +T LI  LC+ G    A   L  M  +G   +   Y  I++   K
Sbjct: 347 VAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCK 393



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 144/302 (47%), Gaps = 10/302 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L + RY       ++ + + G+   L  +NIL++  CK G +R A+ +   +   G
Sbjct: 107 VLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T++    +      G  + SAM   G   D + Y  +I    K G+L EA 
Sbjct: 167 LRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +   +M+ +G+  + V++ TLI+ +CK  K++ A  +  +M  QG   D  T+  LI GL
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G +K     ++ M   G   +  +Y  ++D   K+G ++ A+      + ES+ + D
Sbjct: 287 CKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRL-D 345

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
              Y++++  LC+  R   A K+L   L  G++        +++      C++   K  S
Sbjct: 346 DVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEF----CKKRDSKTAS 401

Query: 311 KI 312
           K+
Sbjct: 402 KL 403



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 108/208 (51%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I++NGLCK    D A  +F  +  +G VP  VT+  LI G CK  ++  A  I
Sbjct: 204 PDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEI 263

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++   G +P+ ITY T++    +  + K   +++  M   G   D   Y T+I    K
Sbjct: 264 YKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCK 323

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A +   +M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G + D  T
Sbjct: 324 EGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGT 383

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +T++I+  CK  + K A   L  M + G
Sbjct: 384 YTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 99/180 (55%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +   G  P+L+TYN LI GLCK G 
Sbjct: 232 MLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGE 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+    ++ E+  +G  P+ I+YTT++    +    ++ LE+ + M ++    D   Y  
Sbjct: 292 LKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTA 351

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+   + A  LL EM++ G
Sbjct: 352 LISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++ LC+     +A +M R +   G  P+  TY ++I   CK    +TA  +L+E
Sbjct: 347 VAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLRE 406

Query: 71  LGDSGHAPNAIT 82
           +   G  P  +T
Sbjct: 407 MQRDGPLPGVVT 418


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 147/278 (52%), Gaps = 7/278 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++ G CK++ +D+ALR+F  L   GF P++VTY+ LI GLCK GR
Sbjct: 80  MVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGR 139

Query: 61  LRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L+ A  +   +  SG   PN +TY +++    R  K    + +L  M   G + D   Y 
Sbjct: 140 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 199

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  F K+ RL +A D + QM   G+  ++V++ +L++  C+E +L  A  +L EM ++
Sbjct: 200 TLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRK 259

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                 YT+  ++DG C+   ++ AR  +  + ++    N+ ++N ++  L K  +   A
Sbjct: 260 SCSPTVYTYNTILDGYCRVNQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEA 317

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
           + + E    +    D   Y++++  LC+ K++  A ++
Sbjct: 318 MELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRV 355



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 130/246 (52%), Gaps = 5/246 (2%)

Query: 35  GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 94
            +Q    VP  VTYN LI GLCKA R   A  +L+E+  SG  P+  TYTT++    +++
Sbjct: 44  AVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSK 103

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSY 153
           K    L +   +  +G+  D   Y  +I    K GRLKEA D   +M+  G  + + V+Y
Sbjct: 104 KSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 163

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           N+LI+ +C+ GK++ A  LL+ M + G   D  T+T L++G CK   +  A   L  M +
Sbjct: 164 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 223

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPS 269
            G   N+  +  ++D L ++ ++  A+++   M  K      +TY++++   C+  +L  
Sbjct: 224 KGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEE 283

Query: 270 ASKLLL 275
           A K +L
Sbjct: 284 ARKFML 289



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 140/270 (51%), Gaps = 3/270 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++GLCK      A  +   +   G +P++ TY  LI G CK+ +   A  +
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFV 126
            ++L   G  P+ +TY+ ++    +  + K  +++   M + G    +   Y ++I+ F 
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++G++ EA + +E+M   G   D+V+Y TL+N +CK  +L+ AY LL++M ++G   +  
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-VFES 245
           T T L+DGLC+   +  A   L  M +      +  YN I+D   +  +++ A   + E 
Sbjct: 232 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEE 291

Query: 246 MEVKDS-FTYSSMVHNLCKAKRLPSASKLL 274
           M+   +  +++ M+  LCK  R   A +L+
Sbjct: 292 MDCPPNVVSFNIMIRGLCKVNRSSEAMELV 321



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 132/256 (51%), Gaps = 10/256 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARW 66
           P   T++ +++GLCK      A+ +F  + K G  +P  VTYN LI G C+ G++  A  
Sbjct: 122 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 181

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ + ++G +P+ +TYTT+M    +  +     ++L+ M RKG T +   + +++    
Sbjct: 182 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLC 241

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY-LLLDEMEKQGFECDK 185
           +  RL +A   + +M        + +YNT+++ YC+  +LE A   +L+EM+      + 
Sbjct: 242 RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMDCPP---NV 298

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  I+I GLCK      A   +E   +   + ++  Y  ++D L ++ K+D A  V+  
Sbjct: 299 VSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRK 358

Query: 246 ME-----VKDSFTYSS 256
           M      + +S TYS+
Sbjct: 359 MLEEPGCLPNSITYST 374



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 5/223 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P T T+N +++G C+    D A+ +   + + G  P++VTY  L+ G CK  RL  
Sbjct: 154 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 213

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++   G  PN +T+T++M    R  +    + IL  M+RK  +   + Y T++ 
Sbjct: 214 AYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 273

Query: 124 AFVKIGRLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            + ++ +L+EA  +M E+M       ++VS+N +I   CK  +   A  L++E  ++   
Sbjct: 274 GYCRVNQLEEARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCN 330

Query: 183 CDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYN 224
            D   +T +ID LC+   +  A R++ + + + G   N   Y+
Sbjct: 331 PDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYS 373


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 149/295 (50%), Gaps = 5/295 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N +++G CK    +    +F  + K G  P +VT N L+ G+C+ GR+ +A   
Sbjct: 417 PDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNF 476

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E    G   +A+TYT ++        ++  +E+ + M + G + D   Y T+I+ F +
Sbjct: 477 FVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQ 536

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ +A+  + ++   G++ D V YNTLI  +C+  K    + +L EME+ G + D  T
Sbjct: 537 AGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTIT 596

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI    K G++K A+  +  M K G    +  Y  +++    +G  + A+ +F+ M+
Sbjct: 597 YNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMK 656

Query: 248 V-----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
                  ++  Y+ ++++LCK  ++ SA  L+      GV    +   A+  GLR
Sbjct: 657 AASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLR 711



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 154/328 (46%), Gaps = 13/328 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFR---GLQKHGFV-----PELVTYNILI 52
           M+  D+ P   TF I++N +CK R  D+AL +     G ++ G +     P++V YN LI
Sbjct: 331 MVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLI 390

Query: 53  KGLCKAGRLRTARWILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
            GLCK GR +    +++ +    G AP+ ITY  ++    +  + + G E+   M ++G 
Sbjct: 391 DGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGV 450

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
             +     T++    + GR+  A ++  +    G++ D V+Y  LIN +C     E A  
Sbjct: 451 APNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAME 510

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
           L +EM K G   D   +  LI G  +AG +  A   L  + K+G   +   YN ++    
Sbjct: 511 LFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFC 570

Query: 232 KDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
           +  K      + + ME      D+ TY++++    K   L  A K++   +K+GV    +
Sbjct: 571 RTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVA 630

Query: 288 AQKAVVDGLRHSGCRREAKKIQSKIRMA 315
              AV++    +G   EA +I   ++ A
Sbjct: 631 TYGAVINAYCLNGNGNEAMEIFKDMKAA 658



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 4/209 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +  +++G  +     +A  +   L+K G  P+ V YN LI G C+  +      
Sbjct: 521 SPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFE 580

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LKE+ ++G  P+ ITY T++    +N   K   +++  M + G       Y  VI A+ 
Sbjct: 581 MLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYC 640

Query: 127 KIGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             G   EA +  + M     V  + V YN LIN  CK  K+++A  L+++M+  G   + 
Sbjct: 641 LNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNT 700

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKI 214
            T+  +  GL    +++      E+M+++
Sbjct: 701 TTYNAIFKGLRDEKDLEKV---FEFMDRM 726



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 114/276 (41%), Gaps = 49/276 (17%)

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           I + C RNRK   G ++ + M + G   +     +++    + G      + ME+MV   
Sbjct: 277 ITRLC-RNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMD 335

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEM----------------------------- 176
           +Q ++V++  LIN  CK  +++ A  +L++M                             
Sbjct: 336 IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK 395

Query: 177 ---------------EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
                           ++G   D  T+  LIDG CKAG I+  +   + MNK G   N+ 
Sbjct: 396 VGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVV 455

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
             N +V  + + G++  A+N F   + +    D+ TY+++++  C       A +L    
Sbjct: 456 TVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEM 515

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           LKSG          ++ G   +G   +A  + ++++
Sbjct: 516 LKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELK 551


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAH 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N K  L +EI   M  +G++ D   Y T+I   
Sbjct: 227 KLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L +A D  ++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++T LI GLCK G    A   L  M  +G   +   Y  ++    K+G +     + + 
Sbjct: 347 VSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 137/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F G+ K G  P +V++N L+ G  K G L     +   + 
Sbjct: 139 FNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMH 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     ++   M  +G   +G  + T+I    K G+L 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++ G   D ++YNTLI   CK+G L  A  L DEM  +G + DK T+T LI
Sbjct: 259 LAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G+++ A  + + M K     +  +Y  ++  L K+G+ +D    + E + V   
Sbjct: 319 DGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ ++H  CK   +   SKLL    + G
Sbjct: 379 PDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDG 411



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 111/210 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+++++NGLCK    D A ++F  +   G VP  VT+  LI G CK G+L  A 
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAM 261

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I K++   G +P+ ITY T++    +        ++   M  KG   D   Y T+I   
Sbjct: 262 EIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGS 321

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L+ A +Y ++M+ + ++LD VSY  LI+  CKEG+   A  +L EM   G + D 
Sbjct: 322 CKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDT 381

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            T+TI++   CK G++K     L+ M + G
Sbjct: 382 GTYTIVMHEFCKNGDVKMGSKLLKEMQRDG 411



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 8/301 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + +  +   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    +      G  + SAM   G   D + Y  +I    K  ++ EA 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAH 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              ++M+  G+  + V++ TLI+ +CK GKL+ A  +  +M  QGF  D  T+  LI GL
Sbjct: 227 KLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G++  A+   + M+  G   +   Y  ++D   K+G ++ A    + M  +    D 
Sbjct: 287 CKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
            +Y++++  LCK  R   A K+L   L  G++        V+    H  C+    K+ SK
Sbjct: 347 VSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVM----HEFCKNGDVKMGSK 402

Query: 312 I 312
           +
Sbjct: 403 L 403



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK    + A    + + K     + V+Y  LI GLCK GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAE 366

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
            +L+E+   G  P+  TYT +M    +N   K+G ++L  M+R G+
Sbjct: 367 KMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGH 412



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  +++GLCK   + +A +M R +   G  P+  TY I++   CK G ++    +LKE
Sbjct: 347 VSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GH P  IT
Sbjct: 407 MQRDGHVPCVIT 418


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 140/262 (53%), Gaps = 1/262 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +++G CK+   D ALR F  ++  G  P+L+TYN LI GLC+ G L+ AR
Sbjct: 327 LVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEAR 386

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+  +G  P+ IT+TT+M  C ++      LEI   M  +G   D   +  +I+  
Sbjct: 387 KLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGL 446

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GR+++A   ++ M++ G + D  +Y  +I+ +CK+G ++    LL EM++ G     
Sbjct: 447 CRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGV 506

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHAINVFE 244
            T+  L++G CK G +K A++ L  M  +    N   +N ++D   K G  +D  I   E
Sbjct: 507 VTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVDFKIFNGE 566

Query: 245 SMEVKDSFTYSSMVHNLCKAKR 266
              V D  +Y+++V+   K  +
Sbjct: 567 KGLVSDYASYTALVNESIKISK 588



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 142/281 (50%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN +++G C+++  +    +   ++     P++ TY+ LI GLCK  R+  A 
Sbjct: 257 LRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEAN 316

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  PN +T+TT++    ++ K  L L     MK +G   D   Y  +I   
Sbjct: 317 GLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGL 376

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G LKEA   + +M+ +G + D +++ TL++  CK+G +++A  + D M ++G E D 
Sbjct: 377 CRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDD 436

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T LI GLC+ G ++ A   L+ M   G   +   Y  ++D   K G +     + + 
Sbjct: 437 VAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKE 496

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M+    V    TY+++++  CK  ++ +A  LL + L   V
Sbjct: 497 MQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEV 537



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           N+   +    +  +  +G+ P +  +NIL+ G CK G +  AR +  E+   G  P+ ++
Sbjct: 204 NQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVS 263

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
           + T++    R++  + G  + S M+ +  + D F Y  +I    K  R++EA    ++M 
Sbjct: 264 FNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMC 323

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
             G+  + V++ TLI+  CK GK++ A    + M+ +G   D  T+  LI+GLC+ G++K
Sbjct: 324 EMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLK 383

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMV 258
            AR  L  M   GF  +   +  ++D   KDG +D A+ + + M  +    D   +++++
Sbjct: 384 EARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALI 443

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
             LC+  R+  A ++L   L +G +        V+D
Sbjct: 444 SGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVID 479



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 87/164 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TF  +++G CK+   D+AL +   + + G   + V +  LI GLC+ GR
Sbjct: 392 MIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGR 451

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A  +LK++  +GH P+  TYT ++ C  +    K+G ++L  M+R G       Y  
Sbjct: 452 VRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNA 511

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           ++  F K G++K A   +  M+   V  + +++N L++ +CK G
Sbjct: 512 LMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHG 555



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 90/181 (49%), Gaps = 4/181 (2%)

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           ++  +++  G   ++  +N L++ +CK G +  A ++ DE+ ++G      +   LI G 
Sbjct: 212 EFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGY 271

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDS 251
           C++ N++   +    M       ++  Y+ +++ L K+ +++ A  +F+ M     V + 
Sbjct: 272 CRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNG 331

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
            T+++++   CK  ++  A +        G+R       A+++GL   G  +EA+K+ ++
Sbjct: 332 VTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNE 391

Query: 312 I 312
           +
Sbjct: 392 M 392


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRT 63
           +L P T  FNI++   CKN   D+A  +   ++K H   P L+TY+ LI GLC +GRL+ 
Sbjct: 195 NLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKE 254

Query: 64  ARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           A  + +E+       P+A+TY  ++       K    L+I+  MK+ G   + F Y  ++
Sbjct: 255 AIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALM 314

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K GRL+EA +  ++M + G++ D V Y TLIN +C+ G+++ A  LL +M +    
Sbjct: 315 NGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCR 374

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T  +++ GLC+ G  + AR  LE +   G   N  +Y  +++ L ++G++  A  +
Sbjct: 375 ADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQL 434

Query: 243 FESM---EVKDSFTYSS--MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
              M    V   F  S+  +VH LC+A ++  A   LL  L+ G +   ++   +V+
Sbjct: 435 VGLMLGRGVLPHFATSNELLVH-LCEAGKVGDAVMALLGLLELGFKPEPNSWALLVE 490



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 128/252 (50%), Gaps = 1/252 (0%)

Query: 1   MICGD-LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           M+  D + P   T+N ++NG C     D AL++   ++K+G  P +  Y+ L+ G CK G
Sbjct: 262 MVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEG 321

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           RL  A+ +  E+   G  P+ + YTT++    R  +    +E+L  M+      D   + 
Sbjct: 322 RLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFN 381

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++    + GR +EA   +E++  +GV L+  SY  ++N  C+EG+L+ A  L+  M  +
Sbjct: 382 VILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGR 441

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G      T   L+  LC+AG +  A + L  + ++GF     ++  +V+ + ++ K+  A
Sbjct: 442 GVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERKLLPA 501

Query: 240 INVFESMEVKDS 251
             + + + +++ 
Sbjct: 502 FELLDDLVIQEP 513



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 137/272 (50%), Gaps = 5/272 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T++ ++NGLC +     A+ +F  +  K   +P+ +TYN LI G C   ++  A  
Sbjct: 234 PNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALK 293

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           I++ +  +G  PN   Y+ +M    +  + +   E+   MK  G   D  GY T+I  F 
Sbjct: 294 IMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFC 353

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR+ EA + ++ M  +  + D V++N ++   C+EG+ E A  +L+ +  +G   +K 
Sbjct: 354 RAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKA 413

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----NV 242
           ++ I+++ LC+ G ++ A   +  M   G   +    N ++  L + GK+  A+     +
Sbjct: 414 SYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGL 473

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
            E     +  +++ +V  +C+ ++L  A +LL
Sbjct: 474 LELGFKPEPNSWALLVELICRERKLLPAFELL 505



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 128/282 (45%), Gaps = 13/282 (4%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLE 101
           P+ +++   I  + +    + A  I   + +  G + N  TY TI+    +++K++    
Sbjct: 55  PKFISHESAINLIKRETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDA 114

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIG---RLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
           +L  M  +   F    +  ++  F K+    R+ E  D +  +V +   L  +S  T +N
Sbjct: 115 VLHQMTYETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAIS--TCLN 172

Query: 159 LYCKEGKLEAAY-LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           L  +  +++     LL+  +    E +     IL+   CK G+I  A   +E M K    
Sbjct: 173 LLVESNQVDLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVS 232

Query: 218 -SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-----SFTYSSMVHNLCKAKRLPSAS 271
             NL  Y+ +++ L   G++  AI +FE M  KD     + TY+++++  C  +++  A 
Sbjct: 233 YPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRAL 292

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           K++    K+G         A+++G    G   EAK++  +++
Sbjct: 293 KIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 334


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 14/289 (4%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           A+FN +L+ LCK++  + A  +FR L+   F  + VTYN+++ G C   R   A  +LKE
Sbjct: 160 ASFNTILDVLCKSKRVEKAYELFRALRGR-FSADTVTYNVIVNGWCLIKRTPKALEVLKE 218

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D G  PN  TY T+++  FR  + +   E    MK++    D   Y TV+  F   G 
Sbjct: 219 MVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGE 278

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +K   +  ++M+ +GV   + +YN  I + CK+  +E A ++ +EM ++G+E +  T+ +
Sbjct: 279 IKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNV 338

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           LI GL  AG        ++ M   G + N + YN ++    +  +++ A+ +FE M   D
Sbjct: 339 LIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGD 398

Query: 251 SF----TYSSMVHNLCKAKRLPS---------ASKLLLSCLKSGVRILK 286
                 TY+ ++  +   KR            A ++L    KSG R+L+
Sbjct: 399 CLPNLDTYNILISGMFVRKRSEDMVVAGNQAFAKEILRLQSKSGGRLLR 447



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ML G  +      A   F  ++K     ++VTY  ++ G   AG 
Sbjct: 219 MVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGE 278

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++  R +  E+   G  P+  TY   ++   +    +  + +   M RKGY  +   Y  
Sbjct: 279 IKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNV 338

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G+     + M++M  +G + +  +YN +I  Y +  ++E A  L ++M    
Sbjct: 339 LIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGD 398

Query: 181 FECDKYTHTILIDGL 195
              +  T+ ILI G+
Sbjct: 399 CLPNLDTYNILISGM 413


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 148/295 (50%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G C     + A      + K G +P + TYN+L+  L   GR+  A 
Sbjct: 350 LVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEAD 409

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++KE+   G  P+AITY  ++    R    K   ++ + M  KG       Y ++I   
Sbjct: 410 DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVL 469

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R+KEA D  E+++  GV  D++ +N +++ +C  G +E A++LL EM+++    D+
Sbjct: 470 SRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDE 529

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L+ G C+ G ++ AR+ L+ M + G   +  +YN ++   G+ G I  A  V + 
Sbjct: 530 VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDE 589

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M          TY++++  LCK +    A +LL   +  G+    S   ++++G+
Sbjct: 590 MLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T N ML+   K    + A  ++  + +      + T+NI++  LCK G+L+ AR
Sbjct: 210 IVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAR 269

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +  +   G  PN ++Y TI+         +    IL AM+ KG   D + Y ++I+  
Sbjct: 270 EFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGM 329

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRL+EA+   ++MV  G+  + V+YNTLI+ YC +G LE A+   DEM K+G     
Sbjct: 330 CKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSV 389

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ +L+  L   G +  A   ++ M K G   +   YN +++   + G    A ++   
Sbjct: 390 STYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNE 449

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M  K       TY+S+++ L +  R+  A  L    L  GV        A+VDG
Sbjct: 450 MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDG 503



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 142/307 (46%), Gaps = 4/307 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +  F++++   C+ R  D A + F  +++ G VP++ T N ++    K  R+  A  +  
Sbjct: 179 SIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 238

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+     +    T+  ++    +  K K   E +  M+  G+  +   Y T+I  +   G
Sbjct: 239 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 298

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++ A   ++ M   G++ D  +Y +LI+  CKEG+LE A  L D+M + G   +  T+ 
Sbjct: 299 NIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYN 358

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            LIDG C  G+++ A  + + M K G   ++  YN +V  L  +G++  A ++ + M   
Sbjct: 359 TLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK 418

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             + D+ TY+ +++   +      A  L    L  G+        +++  L      +EA
Sbjct: 419 GIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 478

Query: 306 KKIQSKI 312
             +  KI
Sbjct: 479 DDLFEKI 485



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN ++ G C+    + A  +   +++ G  P+ ++YN LI G  + G ++ A 
Sbjct: 525 VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAF 584

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P  +TY  ++KC  +N++  L  E+L  M  KG + D   Y ++I   
Sbjct: 585 RVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644

Query: 126 VKIGRLKE 133
             +  L E
Sbjct: 645 GNVDTLVE 652


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 148/295 (50%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G C     + A      + K G +P + TYN+L+  L   GR+  A 
Sbjct: 328 LVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEAD 387

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++KE+   G  P+AITY  ++    R    K   ++ + M  KG       Y ++I   
Sbjct: 388 DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVL 447

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R+KEA D  E+++  GV  D++ +N +++ +C  G +E A++LL EM+++    D+
Sbjct: 448 SRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDE 507

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L+ G C+ G ++ AR+ L+ M + G   +  +YN ++   G+ G I  A  V + 
Sbjct: 508 VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDE 567

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M          TY++++  LCK +    A +LL   +  G+    S   ++++G+
Sbjct: 568 MLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T N ML+   K    + A  ++  + +      + T+NI++  LCK G+L+ AR
Sbjct: 188 IVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAR 247

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +  +   G  PN ++Y TI+         +    IL AM+ KG   D + Y ++I+  
Sbjct: 248 EFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGM 307

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRL+EA+   ++MV  G+  + V+YNTLI+ YC +G LE A+   DEM K+G     
Sbjct: 308 CKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSV 367

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ +L+  L   G +  A   ++ M K G   +   YN +++   + G    A ++   
Sbjct: 368 STYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNE 427

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M  K       TY+S+++ L +  R+  A  L    L  GV        A+VDG
Sbjct: 428 MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDG 481



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 142/307 (46%), Gaps = 4/307 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +  F++++   C+ R  D A + F  +++ G VP++ T N ++    K  R+  A  +  
Sbjct: 157 SIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 216

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+     +    T+  ++    +  K K   E +  M+  G+  +   Y T+I  +   G
Sbjct: 217 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 276

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++ A   ++ M   G++ D  +Y +LI+  CKEG+LE A  L D+M + G   +  T+ 
Sbjct: 277 NIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYN 336

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            LIDG C  G+++ A  + + M K G   ++  YN +V  L  +G++  A ++ + M   
Sbjct: 337 TLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK 396

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             + D+ TY+ +++   +      A  L    L  G+        +++  L      +EA
Sbjct: 397 GIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 456

Query: 306 KKIQSKI 312
             +  KI
Sbjct: 457 DDLFEKI 463



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN ++ G C+    + A  +   +++ G  P+ ++YN LI G  + G ++ A 
Sbjct: 503 VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAF 562

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P  +TY  ++KC  +N++  L  E+L  M  KG + D   Y ++I   
Sbjct: 563 RVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622

Query: 126 VKIGRLKE 133
             +  L E
Sbjct: 623 GNVDTLVE 630


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 152/320 (47%), Gaps = 12/320 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L+P   TF  +++G C+      A  MF  ++  G VP ++ Y ILI+GLC   +
Sbjct: 173 MISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNK 232

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + + + + G  PN  TY T+M    +    K  L +   M  +G   D   +  
Sbjct: 233 IEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGI 292

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G +K A +    M+   V  +I  YN+LI+ YCK G +  A  L  E+E+  
Sbjct: 293 LIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFE 352

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T++ILI GLC     + A    E M K G  +N   YN ++D   K+GK+D A+
Sbjct: 353 VSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKAL 412

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSA----SKLLLSCLKSGVRILKSAQKAV 292
            +   M       +  T+S+++   CK + L +A    S++++  L   V        A+
Sbjct: 413 EICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDV----VTYTAM 468

Query: 293 VDGLRHSGCRREAKKIQSKI 312
           +DG    G  +EA K+ S +
Sbjct: 469 IDGHCKYGSMKEALKLYSDM 488



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 21/286 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP  A +N +++  CK      A+ +F  L++    P++ TY+ILI+GLC   R
Sbjct: 313 MIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSR 372

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  I +++   G   N++TY +++  C +  K    LEI S M   G   +   + T
Sbjct: 373 TEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFST 432

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + KI  L+ A     +MV   +  D+V+Y  +I+ +CK G ++ A  L  +M   G
Sbjct: 433 LIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNG 492

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD---------------SNLEAYNC 225
              + YT + L+DGLCK G I  A L L +  KI F                +N  AY  
Sbjct: 493 ITPNCYTISCLLDGLCKDGKISDA-LEL-FTEKIEFQTPRCNVDAGGSKPSLTNHVAYTA 550

Query: 226 IVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
           ++  L +DG+   A+ +F  M       D   Y  M+  L + K +
Sbjct: 551 LIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYI 596



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 134/297 (45%), Gaps = 7/297 (2%)

Query: 20  LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           LCK    + AL M+    K G    +   N+L+  L K GR      I +E+  +G +P+
Sbjct: 125 LCKMELVEEALSMY---HKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPS 181

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            IT+ T++  C R        E+   M+ KG       Y  +I       +++EA     
Sbjct: 182 VITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHR 241

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
            M   GV  ++ +YNTL++ YCK    + A  L  +M  +G   D  T  ILIDGLCK G
Sbjct: 242 AMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFG 301

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---ESMEV-KDSFTYS 255
            +K AR     M K     N+  YN ++D   K G +  A+ +F   E  EV  D FTYS
Sbjct: 302 EMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYS 361

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            ++  LC   R   A  +     K G+        +++DG    G   +A +I S++
Sbjct: 362 ILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQM 418


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 152/305 (49%), Gaps = 4/305 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +++ LCK R+ D+AL +F  ++  G  P ++TY+ LI  LC   R   A  +L ++ 
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +    PN +T+  ++    +  K     ++   M ++    D F Y ++I  F    RL 
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA    E M++     ++V+YNTLIN +CK  +++    L  EM ++G   +  T+T LI
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS- 251
            G  +A +   A++  + M   G   N+  YN ++D L K+GK++ A+ VFE ++     
Sbjct: 443 HGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 502

Query: 252 ---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              +TY+ M+  +CKA ++     L  S    GV+        ++ G    G + EA  +
Sbjct: 503 PTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADAL 562

Query: 309 QSKIR 313
             K+R
Sbjct: 563 FRKMR 567



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 153/314 (48%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  +++GL  +     A+ +   + + G  P LVTY +++ GLCK G +  A  +
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 247

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++  +    N + Y+T++    + R     L + + M+ KG   +   Y ++I+    
Sbjct: 248 LNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCN 307

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R  +A+  +  M+   +  ++V++N LI+ + KEGKL  A  L DEM K+  + D +T
Sbjct: 308 YERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 367

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI+G C    +  A+   E M       N+  YN +++   K  +ID  + +F  M 
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V ++ TY++++H   +A+   +A  +    +  GV         ++DGL  +G   
Sbjct: 428 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 487

Query: 304 EAKKIQSKIRMAKI 317
           +A  +   ++ +K+
Sbjct: 488 KAMVVFEYLQRSKM 501



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 124/246 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TFN +++   K      A +++  + K    P++ TY+ LI G C   R
Sbjct: 321 MIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 380

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      PN +TY T++    + ++   G+E+   M ++G   +   Y T
Sbjct: 381 LDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTT 440

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F +      A    +QMV+DGV  +I++YNTL++  CK GKLE A ++ + +++  
Sbjct: 441 LIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 500

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E   YT+ I+I+G+CKAG ++        ++  G   ++  YN ++    + G  + A 
Sbjct: 501 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEAD 560

Query: 241 NVFESM 246
            +F  M
Sbjct: 561 ALFRKM 566



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 132/267 (49%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NI++N  C+      AL +   + K G+ P +VT + L+ G C   R+  A  ++ ++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+ IT+TT++   F + K    + ++  M ++G   +   Y  V+    K G +
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 241

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++ ++V Y+T+I+  CK    + A  L  EME +G   +  T++ L
Sbjct: 242 DLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSL 301

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC       A   L  M +   + N+  +N ++D   K+GK+  A  +++ M  +  
Sbjct: 302 ISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI 361

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D FTYSS+++  C   RL  A  + 
Sbjct: 362 DPDIFTYSSLINGFCMHDRLDEAKHMF 388



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 148/302 (49%), Gaps = 5/302 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           I+ NGL   +  D+A+ +F G+ K   +P +  +N L+  + K  +      + +++   
Sbjct: 56  ILRNGLHSMKL-DDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL 114

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G + N  TY  ++ C  R  +  L L +L  M + GY        +++  +    R+ +A
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              ++QMV  G + D +++ TLI+      K   A  L+D M ++G + +  T+ ++++G
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
           LCK G+I  A   L  M     ++N+  Y+ ++D L K    D A+N+F  ME K    +
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
             TYSS++  LC  +R   AS+LL   ++  +        A++D     G   EA+K+  
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD 354

Query: 311 KI 312
           ++
Sbjct: 355 EM 356



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 93/187 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D  P   T+N ++NG CK +  D  + +FR + + G V   VTY  LI G  +A  
Sbjct: 391 MISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARD 450

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ + K++   G  PN +TY T++    +N K +  + +   ++R       + Y  
Sbjct: 451 CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 510

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++++  D    +   GV+ D++ YNT+I+ +C++G  E A  L  +M + G
Sbjct: 511 MIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570

Query: 181 FECDKYT 187
              D  T
Sbjct: 571 PLPDSGT 577



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 4/192 (2%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L +A      MV       I  +N L++   K  K +    L ++M++ G   + YT+ 
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           ILI+  C+   I  A   L  M K+G++ ++   + +++      +I  A+ + + M   
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D+ T+++++H L    +   A  L+   ++ G +        VV+GL   G    A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 306 KKIQSKIRMAKI 317
             + +K+  AKI
Sbjct: 245 FNLLNKMEAAKI 256


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 167/348 (47%), Gaps = 38/348 (10%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T+NI++NGLCK    +D A+ M   + K G++P++ T+N LI G CK  +L +A  
Sbjct: 418 PDIWTYNIIINGLCKMGNISDAAVVMNDAIVK-GYLPDVFTFNTLIDGYCKRLKLDSALQ 476

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++ +   G AP+ ITY +++    +  K K   E    M  KG   +   Y  +I  F 
Sbjct: 477 LVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFC 536

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD------------ 174
           KI +L+EA+  + +M  DG+  D VS+NTLI+ +C+ G L+ AYLL              
Sbjct: 537 KINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD 596

Query: 175 -----------------------EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                                  EM  +G++ D YT+ IL+DGLCKA N+  A  HL  M
Sbjct: 597 TFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEM 656

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSAS 271
              GF  ++  +  +++ L  + ++  A+ +   M V+       +   L   K+  +A 
Sbjct: 657 ISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIM-VRMGVVPEVVDTILSTDKKEIAAP 715

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
           K+L+  L     I   A + + +G+R +   R+A+K  + I      H
Sbjct: 716 KILVEELMKKGHISYRAYEVLHEGVRDNKLTRKARKADASIMFVSQHH 763



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 157/311 (50%), Gaps = 5/311 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P  ATFN +L+ LC+      +  +   + K G      T NI I+GLC+ GR
Sbjct: 202 MLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGR 261

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +++ +G +  AP+ +TY T+M+   ++ K +   + L  M  +G   D F Y T
Sbjct: 262 LEEAVALVERMG-AYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNT 320

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G L+EAT+ ++  V  G   D V+Y +LIN  C EG +E A  L +E + + 
Sbjct: 321 IIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKD 380

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   +  L+ GLC+ G I  A   +  M + G   ++  YN I++ L K G I  A 
Sbjct: 381 LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAA 440

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V     VK    D FT+++++   CK  +L SA +L+      G+        +V++GL
Sbjct: 441 VVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGL 500

Query: 297 RHSGCRREAKK 307
             +G  +E  +
Sbjct: 501 CKAGKAKEVNE 511



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 139/281 (49%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++ GLCK+     A +    +   G +P+  TYN +I G CK+G L+ A 
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEAT 335

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK+    G  P+ +TY +++         +  LE+ +  + K    D   Y +++   
Sbjct: 336 ELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGL 395

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G +  A   M +MV +G   DI +YN +IN  CK G +  A +++++   +G+  D 
Sbjct: 396 CRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDV 455

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T   LIDG CK   +  A   +E M   G   ++  YN +++ L K GK       FE 
Sbjct: 456 FTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEE 515

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M +K    ++ TY+ ++ N CK  +L  AS +++   + G+
Sbjct: 516 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGL 556



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 4/281 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P    +N ++ GLC+     +AL++   + + G  P++ TYNI+I GLCK G +  A
Sbjct: 380 DLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDA 439

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             ++ +    G+ P+  T+ T++    +  K    L+++  M   G   D   Y +V+  
Sbjct: 440 AVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNG 499

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+ KE  +  E+M+  G + + ++YN LI  +CK  +LE A  ++  M + G   D
Sbjct: 500 LCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPD 559

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +   LI G C+ G++ GA L  + +++ G+ +  + +N ++        +  A  +F 
Sbjct: 560 AVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFG 619

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            M  K    D +TY  +V  LCKA  +  A   L   +  G
Sbjct: 620 EMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKG 660



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 141/329 (42%), Gaps = 40/329 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    +N +++ L    Y D A +++  +   G  P+  T+ + +K  C  GR   A  
Sbjct: 103 PPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALR 162

Query: 67  ILKELGDSGHAPNAITYTTIMK---------------------------CCFRNRKYKL- 98
           +L+ L + G       Y T+++                             F N  + L 
Sbjct: 163 LLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALC 222

Query: 99  -------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
                     +L+ + ++G + + F     I    + GRL+EA   +E+M    V  D+V
Sbjct: 223 QKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGA-YVAPDVV 281

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YNTL+   CK+ K++ A   L  M  QG   D +T+  +IDG CK+G ++ A   L+  
Sbjct: 282 TYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDA 341

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
              GF  +   Y  +++ L  +G I+ A+ +F   + K    D   Y+S+V  LC+   +
Sbjct: 342 VFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLI 401

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             A +++   ++ G          +++GL
Sbjct: 402 LHALQVMNEMVEEGCHPDIWTYNIIINGL 430



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 7/273 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+  F  +      P    YN ++  L  A     A  +   +  +G AP+A T+T  +K
Sbjct: 90  AVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLK 149

Query: 89  C-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
             C   R + + L +L ++  +G       YCTV+      G    A    ++M+   V 
Sbjct: 150 SFCLTGRPH-VALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVF 208

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D+ ++N +++  C++G +  +  LL ++ K+G   +K+T  I I GLC+ G ++ A   
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           +E M       ++  YN ++  L KD K+  A      M     + D FTY++++   CK
Sbjct: 269 VERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCK 327

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +  L  A++LL   +  G    +    ++++GL
Sbjct: 328 SGMLQEATELLKDAVFKGFVPDRVTYCSLINGL 360



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 83/176 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +LNGLCK          F  +   G  P  +TYNILI+  CK  +L  A 
Sbjct: 486 IAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEAS 545

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   G  P+A+++ T++    RN        +   +  KGY+     +  +I A+
Sbjct: 546 GVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAY 605

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
                ++ A     +M++ G + D+ +Y  L++  CK   ++ AY  L EM  +GF
Sbjct: 606 SSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGF 661



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 12/213 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NI++   CK    + A  +   + + G VP+ V++N LI G C+ G 
Sbjct: 516 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGD 575

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + ++L + G++  A T+  ++         ++  +I   M  KGY  D + Y  
Sbjct: 576 LDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRI 635

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K   +  A  ++ +M++ G    + ++  ++NL     ++  A  ++  M + G
Sbjct: 636 LVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMG 695

Query: 181 ---------FECDK---YTHTILIDGLCKAGNI 201
                       DK       IL++ L K G+I
Sbjct: 696 VVPEVVDTILSTDKKEIAAPKILVEELMKKGHI 728



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 4/199 (2%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y   I A+ + GRL+ A D  E+M          +YN +++        + A+ +   M 
Sbjct: 74  YVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRML 133

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
             G   D  THT+ +   C  G    A   L  +++ G D+   AY  +V  L   G   
Sbjct: 134 AAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGY 193

Query: 238 HAINVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
           +A ++F+ M  +D F    T+++++H LC+   +  +  LL   LK G+   K      +
Sbjct: 194 NARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWI 253

Query: 294 DGLRHSGCRREAKKIQSKI 312
            GL   G   EA  +  ++
Sbjct: 254 RGLCEDGRLEEAVALVERM 272


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 143/271 (52%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + TFN+++NGLCK        ++   +   G VP  VTYN +I GLC  G+L  A  +
Sbjct: 256 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 315

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  S   PN +TY T++    +  +   G+ +LS+++ +G+  + + Y T+I+   K
Sbjct: 316 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFK 375

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             + +EA    ++MV  G Q +IV Y+ LI+  C+EGKL+ A  +L EM  +G   + +T
Sbjct: 376 EEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFT 435

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI G  K GN + A    + M K     N   Y+ ++  L +DGK+  A+ ++  M 
Sbjct: 436 YSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHML 495

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    D   YSSM+H LC A  +    KL 
Sbjct: 496 GRGLRPDVVAYSSMIHGLCNAGSVEVGLKLF 526



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 6/281 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N ++NGLC     D A+ +   +     VP  VTY  LI GL K GR      
Sbjct: 290 VPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVH 349

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  L + GH  N   Y+T++   F+  K +  + +   M  KG   +   Y  +I    
Sbjct: 350 LLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLC 409

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G+L EA + + +MV  G   +  +Y++LI  + K G  + A  +  EM K     ++ 
Sbjct: 410 REGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEI 469

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF--- 243
            +++LI GLC+ G ++ A +   +M   G   ++ AY+ ++  L   G ++  + +F   
Sbjct: 470 CYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 529

Query: 244 ---ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
              ES    D  TY+ ++  LCK   +  A  LL S L  G
Sbjct: 530 LCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRG 570



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 146/305 (47%), Gaps = 4/305 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P   +FN+++  +CK    D A+ +FR +      P++ TY  L+ GLCK  R+  A
Sbjct: 183 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 242

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+   G  P+++T+  ++    +        +++  M  KG   +   Y T+I  
Sbjct: 243 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIING 302

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G+L +A   +++MV      + V+Y TLIN   K+G+      LL  +E++G   +
Sbjct: 303 LCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHAN 362

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +Y ++ LI GL K    + A    + M + G   N+  Y+ ++D L ++GK+D A  +  
Sbjct: 363 EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILC 422

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M  K    ++FTYSS++    K      A ++     K+     +     ++ GL   G
Sbjct: 423 EMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDG 482

Query: 301 CRREA 305
             REA
Sbjct: 483 KLREA 487



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 2/248 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGL K   + + + +   L++ G       Y+ LI GL K  +
Sbjct: 319 MVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEK 378

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K++ + G  PN + Y+ ++    R  K     EIL  M  KG T + F Y +
Sbjct: 379 SEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSS 438

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K G  ++A    ++M  +    + + Y+ LI+  C++GKL  A ++   M  +G
Sbjct: 439 LIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRG 498

Query: 181 FECDKYTHTILIDGLCKAGNIK-GARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDH 238
              D   ++ +I GLC AG+++ G +L  E +  +     ++  YN ++  L K   I H
Sbjct: 499 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISH 558

Query: 239 AINVFESM 246
           AI++  SM
Sbjct: 559 AIDLLNSM 566



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 150/312 (48%), Gaps = 10/312 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFR-GLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +FN +LN + +      AL  +  G+  K    P ++++N++IK +CK G +  A  + +
Sbjct: 153 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 212

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+      P+  TY T+M    +  +    + +L  M+ +G       +  +I    K G
Sbjct: 213 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 272

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +   T  ++ M   G   + V+YNT+IN  C +GKL+ A  LLD M       +  T+ 
Sbjct: 273 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 332

Query: 190 ILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            LI+GL K G ++ G  L L  + + G  +N  AY+ ++  L K+ K + A+ +++ M  
Sbjct: 333 TLINGLVKQGRSVDGVHL-LSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVE 391

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           K    +   YS+++  LC+  +L  A ++L   +  G         +++ G   +G  ++
Sbjct: 392 KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQK 451

Query: 305 AKKIQSKIRMAK 316
           A ++  +  MAK
Sbjct: 452 AIRVWKE--MAK 461



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 130/297 (43%), Gaps = 55/297 (18%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            ++ +++GL K   ++ A+ +++ + + G  P +V Y+ LI GLC+ G+L  A+ IL E+
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PNA TY++++K  F+    +  + +   M +     +   Y  +I    + G+L
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 484

Query: 132 KEATDYMEQMVTDGV-------------------------------------QLDIVSYN 154
           +EA      M+  G+                                     Q D+V+YN
Sbjct: 485 REAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 544

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
            L+   CK+  +  A  LL+ M  +G   D  T  I ++ L +  N    +   E++++ 
Sbjct: 545 ILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLN--PPQDGREFLDE- 601

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
                      +V RL K  +I  A  + E M  K    ++ T+  ++  LCK K++
Sbjct: 602 -----------LVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKV 647



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGL--QKHGFVPELVTYNILIKGLCKAGRLRT 63
           L P    ++ M++GLC     +  L++F  +  Q+    P++VTYNIL++ LCK   +  
Sbjct: 499 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISH 558

Query: 64  ARWILKELGDSGHAPNAIT 82
           A  +L  + D G  P+ IT
Sbjct: 559 AIDLLNSMLDRGCNPDLIT 577



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLIN 158
            ++   MKR+   F    +  V  A+ K    ++A +   +MV +   +  + S+N+++N
Sbjct: 100 FQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLN 159

Query: 159 LYCKEGKLEAAYLLLDEME-----KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           +  +EG    A   L+  E     K     +  +  ++I  +CK G +  A      M  
Sbjct: 160 VIIQEGLFHRA---LEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAI 216

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAKRLPS 269
              + ++  Y  ++D L K+ +ID A+ + + M+++  F    T++ +++ LCK   +  
Sbjct: 217 QKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVR 276

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +KL+ +    G    +     +++GL
Sbjct: 277 VTKLVDNMFLKGCVPNEVTYNTIINGL 303



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1   MIC--GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 55
           M+C   D  P   T+NI+L  LCK     +A+ +   +   G  P+L+T NI +  L
Sbjct: 529 MLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 4/310 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFNI+++ LCK      A  +F  +++ G +P++VT+N LI G  K G L     
Sbjct: 185 APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQ 244

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++E+  SG   + +TY  ++ C  +  + +      +AMKR+G   +   + T + AF 
Sbjct: 245 LVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G ++EA     QM   G+ L+  +Y  LI+  CK G+L+ A +LLDEM +QG   +  
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T+L+DGLCK   +  A   L  M K G  +N   Y  ++     +   + A+ +   M
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEM 424

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + K    D   Y +++  LC   +L  A  LL    +SG+         ++D    SG  
Sbjct: 425 KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKV 484

Query: 303 REAKKIQSKI 312
            EA  +  KI
Sbjct: 485 PEAIAMLQKI 494



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 129/282 (45%), Gaps = 43/282 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T N +L  L ++R      R+F  L      P + T+NI+I  LCK G L  AR
Sbjct: 153 VPPNTRTCNHILLRLARDRSGRLVRRLFEQLP----APNVFTFNIVIDFLCKEGELAEAR 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + + G  P+ +T+ +++                          DG+G C      
Sbjct: 209 SLFSRMKEMGCLPDVVTFNSLI--------------------------DGYGKC------ 236

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    +E+M   G + D+V+YN LIN +CK G++E AY     M+++G   + 
Sbjct: 237 ---GELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANV 293

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T +  +D  CK G ++ A      M   G   N   Y C++D   K G++D AI + + 
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDE 353

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M  +    +  TY+ +V  LCK +++  A  +L    K+GVR
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR 395



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 136/307 (44%), Gaps = 17/307 (5%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF+  ++  CK      A+++F  ++  G      TY  LI G CKAGRL  A  +L 
Sbjct: 293 VVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G   N +TYT ++    + RK     ++L  M++ G   +   Y T+I       
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             ++A   + +M   G++LDI  Y  LI   C   KL+ A  LL +M++ G E +   +T
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            ++D   K+G +  A   L+ +   GF  N             +G ++ A+ +F  M  K
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPN-------------NGCLNEAVQLFNEMVHK 519

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D   Y++++    K   L  A  L    + SG+++        + G  +     EA
Sbjct: 520 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEA 579

Query: 306 KKIQSKI 312
           +++ S++
Sbjct: 580 REVFSEM 586



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 13/220 (5%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G   N+ ++ AL +   ++  G   ++  Y  LI+GLC   +L  A+ +L ++ 
Sbjct: 401 YTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMD 460

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +SG  PN I YTT+M  CF++ K    + +L  +   G+  +              G L 
Sbjct: 461 ESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNN-------------GCLN 507

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA     +MV  G+ LD V Y  L++ Y K+G L  A+ L  +M   G + D + +T  I
Sbjct: 508 EAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFI 567

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
            G C    +  AR     M   G   +   YNC++ ++ +
Sbjct: 568 SGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLITQIPE 607



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T  I+ID LCK G +  AR     M ++G   ++  +N ++D  GK G++D    + E 
Sbjct: 189 FTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEE 248

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D  TY+++++  CK  R+ +A     +  + GV          VD     G 
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308

Query: 302 RREAKKIQSKIRM 314
            REA K+ +++R+
Sbjct: 309 VREAMKLFAQMRV 321


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 157/328 (47%), Gaps = 23/328 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    + ++L+ LC     D A+++   ++  G +P+ VTYN  + GLCK GR+  A 
Sbjct: 238 IMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAF 297

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L  L D G A     Y+ ++   F+ R++  G      M  +  + D   Y  +I   
Sbjct: 298 QRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGC 357

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GR+++A  +++ M   G   D   YNT++ + C  G LE A+ L  EM +     D 
Sbjct: 358 AEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDS 417

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T TI+I GLCK G +  A    + M + G D  +  YN ++D   ++G+++ A  +F  
Sbjct: 418 TTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHK 477

Query: 246 ME-----------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
           ME                 V+DS +   +VH++C++ ++  A KLL S + SGV      
Sbjct: 478 MEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVT 537

Query: 289 QKAVVDGLRHSGCRREAKKIQSKIRMAK 316
              +++GL    C+  A+ +   +R+ K
Sbjct: 538 YNTLINGL----CK--ARNLDGAVRLFK 559



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 22/243 (9%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L   + T  IM+ GLCK    D A+++F  + +HG  P ++TYN LI G  + GR
Sbjct: 408 MLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGR 467

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +  ++ + G+ P+     T+     R+          S   RK           
Sbjct: 468 LEEARMLFHKM-EMGNNPSLFLRLTLGANQVRD----------SESLRK----------- 505

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G++ +A   +  ++  GV  D+V+YNTLIN  CK   L+ A  L  E++ +G
Sbjct: 506 LVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D+ T+  LIDGL +A     A +  + + + G   +L  YN ++  L +  K+  AI
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 241 NVF 243
           N++
Sbjct: 626 NLW 628



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 130/289 (44%), Gaps = 5/289 (1%)

Query: 24  RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 83
           R+ D A++ F  + +    P    YN ++K L  +G +  A  +   +  +G APN  TY
Sbjct: 152 RHAD-AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATY 210

Query: 84  TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
             +M    +       L++   M  +G   +   Y  ++++    G++ EA   +  M  
Sbjct: 211 NVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKD 270

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            G   D V+YN  ++  CK G++  A+  L  ++  GF      ++ LIDGL +A     
Sbjct: 271 KGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDE 330

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVH 259
              + + M +     ++  Y  ++    + G+I+ A++  + M+    V D+F Y++++ 
Sbjct: 331 GFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLK 390

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            LC    L  A  L    L++ + +  + Q  ++ GL   G   EA +I
Sbjct: 391 VLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQI 439



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 4/232 (1%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            +  L+     AGR   A      + +    P A  Y TI+K    +    L L + + M
Sbjct: 139 AFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRM 198

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
              G   +   Y  ++    K G   +A    ++M+  G+  ++  Y  L++  C  GK+
Sbjct: 199 VAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKI 258

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A  LL  M+ +G   D+ T+   + GLCK G +  A   L  +   GF   L+ Y+C+
Sbjct: 259 DEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCL 318

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           +D L +  + D     +++M  +    D   Y+ M+    +A R+  A   L
Sbjct: 319 IDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I   + P   T+N ++NGLCK R  D A+R+F+ LQ  G  P+ +TY  LI GL +A R
Sbjct: 526 IIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHR 585

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + + +  SG +P+   Y ++M+   R +K    + +      K Y F       
Sbjct: 586 ENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFP------ 639

Query: 121 VIAAFVKIGRLKEATD-YMEQMVTDGVQLD----IVSYNT----LINLYCKEGKLEAAYL 171
            + + V     KE  D  ++  V + +++D     +S N     LI L C+  + + A  
Sbjct: 640 -VESEVLANAHKEIEDGSLDDGVRELIKIDQEYGSISSNPYTIWLIGL-CQVRRTDDALR 697

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           +   +++ G +       +LI+ LC   N+  A
Sbjct: 698 IFHTLQEFGIDITPACCALLINYLCWDRNLNAA 730



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +++ +C++     A ++ R +   G VP++VTYN LI GLCKA  L  A  + KEL   G
Sbjct: 506 LVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            +P+ ITY T++    R  +    + +   + + G +     Y +++ +  ++ +L +A 
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 136 ----DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
               DY+ +     V+ ++++     +   ++G L+     L +++++        +TI 
Sbjct: 626 NLWLDYLPKKYNFPVESEVLAN---AHKEIEDGSLDDGVRELIKIDQEYGSISSNPYTIW 682

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + GLC+      A      + + G D        +++ L  D  ++ A+++ 
Sbjct: 683 LIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVDIM 734


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 165/354 (46%), Gaps = 44/354 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF +++   C     D+A  + R + KHG VP  + Y +LI  L +  R
Sbjct: 191 MLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNR 250

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF---- 116
           +  A  +L+E+   G  P+  T+  ++    +  +     ++   M  + +T D      
Sbjct: 251 VNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGY 310

Query: 117 ---GYC------------------------TVIAAFVKIGRLKEATDYM-EQMVTDGVQL 148
              G C                        T+I  +V  GR +EA D + + MV  G + 
Sbjct: 311 LMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEP 370

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D  ++N +I+  CK+G L +A   LDEM K+GFE +  T+TILIDG CK G+ + A   +
Sbjct: 371 DAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVV 430

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M+  G   N   YNC++  L KDGKI  A+ ++  M  K    D +T++S+++ LCK 
Sbjct: 431 NSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKN 490

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR----REAKKIQSKIRM 314
            ++  A  L    L  GV     A     + L H+  R    ++A K+  ++R 
Sbjct: 491 DKMEEALGLYRDMLLEGV----IANTVTYNTLIHAFLRLELIQQADKLVGEMRF 540



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFNIM++GLCK  Y  +AL     + K GF P ++TY ILI G CK G 
Sbjct: 363 MVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGH 422

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  ++  +   G + N + Y  ++    ++ K +  L++   M  KG   D + + +
Sbjct: 423 FEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNS 482

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  +++EA      M+ +GV  + V+YNTLI+ + +   ++ A  L+ EM  +G
Sbjct: 483 LIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRG 542

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI  LCK G  +     +E M       ++ + N +++   + GK++ A+
Sbjct: 543 CPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDAL 602

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
                M       D  TY+S+++ LCK  R   A  L 
Sbjct: 603 QFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLF 640



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 4/258 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N ++  LCK+    +AL+M+  +   G  P++ T+N LI GLCK  ++  A  + +
Sbjct: 442 TVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYR 501

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G   N +TY T++    R    +   +++  M+ +G   D   Y  +I A  K G
Sbjct: 502 DMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTG 561

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             ++    +EQM  + +   I S N LIN +C+ GK+  A   L +M ++G   D  T+ 
Sbjct: 562 ATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYN 621

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-VFESME- 247
            LI+GLCK G  + A      +   G   +   YN ++ R   +G  + A   +F+ +  
Sbjct: 622 SLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSN 681

Query: 248 --VKDSFTYSSMVHNLCK 263
             + +  T+S +++   K
Sbjct: 682 GFIPNEITWSILINYFVK 699



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 9/283 (3%)

Query: 41  FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 100
           F P   +YN++++ L      + A  +  ++   G +P   T+  +MK      +     
Sbjct: 161 FEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSAC 220

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
            +L  M + G   +   Y  +I A  +  R+ EA   +E+M   G + D+ ++N +I+  
Sbjct: 221 SLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGL 280

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           CK G++  A  L D M  + F  D      L+ GLC+ G +  AR  L  +     + N 
Sbjct: 281 CKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIP----NPNT 336

Query: 221 EAYNCIVDRLGKDGKIDHAIN-VFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLL 275
             YN +++     G+ + A + ++++M +     D+FT++ M+  LCK   L SA + L 
Sbjct: 337 VLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLD 396

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
             +K G          ++DG    G   EA K+ + +    +S
Sbjct: 397 EMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLS 439



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   ++ P   + NI++N  C+    ++AL+  R + + G  P++VTYN LI GLCK GR
Sbjct: 573 MFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGR 632

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            + A  +   L   G  P+A+TY T++ + C+    +    ++L      G+  +   + 
Sbjct: 633 FQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGL-FNDACQLLFKGVSNGFIPNEITWS 691

Query: 120 TVIAAFVK 127
            +I  FVK
Sbjct: 692 ILINYFVK 699



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 2/170 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++  LCK   T+  L +   +      P + + NILI   C+ G++  A   L+++
Sbjct: 549 TYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDM 608

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ +TY +++    +  +++  L + + ++ KG   D   Y T+I+ +   G  
Sbjct: 609 IQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLF 668

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
            +A   + + V++G   + ++++ LIN + K       + +L  M   GF
Sbjct: 669 NDACQLLFKGVSNGFIPNEITWSILINYFVKNNSDSEQFTIL--MGNWGF 716



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 49/93 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   LTP   T+N ++NGLCK      AL +F GLQ  G  P+ VTYN LI   C  G 
Sbjct: 608 MIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGL 667

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93
              A  +L +   +G  PN IT++ ++    +N
Sbjct: 668 FNDACQLLFKGVSNGFIPNEITWSILINYFVKN 700


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 143/271 (52%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + TFN+++NGLCK        ++   +   G VP  VTYN +I GLC  G+L  A  +
Sbjct: 240 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 299

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  S   PN +TY T++    +  +   G+ +LS+++ +G+  + + Y T+I+   K
Sbjct: 300 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFK 359

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             + +EA    ++MV  G Q +IV Y+ LI+  C+EGKL+ A  +L EM  +G   + +T
Sbjct: 360 EEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFT 419

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI G  K GN + A    + M K     N   Y+ ++  L +DGK+  A+ ++  M 
Sbjct: 420 YSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHML 479

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    D   YSSM+H LC A  +    KL 
Sbjct: 480 GRGLRPDVVAYSSMIHGLCNAGSVEVGLKLF 510



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 6/281 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N ++NGLC     D A+ +   +     VP  VTY  LI GL K GR      
Sbjct: 274 VPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVH 333

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  L + GH  N   Y+T++   F+  K +  + +   M  KG   +   Y  +I    
Sbjct: 334 LLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLC 393

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G+L EA + + +MV  G   +  +Y++LI  + K G  + A  +  EM K     ++ 
Sbjct: 394 REGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEI 453

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF--- 243
            +++LI GLC+ G ++ A +   +M   G   ++ AY+ ++  L   G ++  + +F   
Sbjct: 454 CYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 513

Query: 244 ---ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
              ES    D  TY+ ++  LCK   +  A  LL S L  G
Sbjct: 514 LCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRG 554



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 146/305 (47%), Gaps = 4/305 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P   +FN+++  +CK    D A+ +FR +      P++ TY  L+ GLCK  R+  A
Sbjct: 167 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 226

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+   G  P+++T+  ++    +        +++  M  KG   +   Y T+I  
Sbjct: 227 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIING 286

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G+L +A   +++MV      + V+Y TLIN   K+G+      LL  +E++G   +
Sbjct: 287 LCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHAN 346

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +Y ++ LI GL K    + A    + M + G   N+  Y+ ++D L ++GK+D A  +  
Sbjct: 347 EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILC 406

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M  K    ++FTYSS++    K      A ++     K+     +     ++ GL   G
Sbjct: 407 EMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDG 466

Query: 301 CRREA 305
             REA
Sbjct: 467 KLREA 471



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 2/248 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGL K   + + + +   L++ G       Y+ LI GL K  +
Sbjct: 303 MVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEK 362

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K++ + G  PN + Y+ ++    R  K     EIL  M  KG T + F Y +
Sbjct: 363 SEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSS 422

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K G  ++A    ++M  +    + + Y+ LI+  C++GKL  A ++   M  +G
Sbjct: 423 LIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRG 482

Query: 181 FECDKYTHTILIDGLCKAGNIK-GARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDH 238
              D   ++ +I GLC AG+++ G +L  E +  +     ++  YN ++  L K   I H
Sbjct: 483 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISH 542

Query: 239 AINVFESM 246
           AI++  SM
Sbjct: 543 AIDLLNSM 550



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 150/312 (48%), Gaps = 10/312 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFR-GLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +FN +LN + +      AL  +  G+  K    P ++++N++IK +CK G +  A  + +
Sbjct: 137 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 196

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+      P+  TY T+M    +  +    + +L  M+ +G       +  +I    K G
Sbjct: 197 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 256

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +   T  ++ M   G   + V+YNT+IN  C +GKL+ A  LLD M       +  T+ 
Sbjct: 257 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 316

Query: 190 ILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            LI+GL K G ++ G  L L  + + G  +N  AY+ ++  L K+ K + A+ +++ M  
Sbjct: 317 TLINGLVKQGRSVDGVHL-LSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVE 375

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           K    +   YS+++  LC+  +L  A ++L   +  G         +++ G   +G  ++
Sbjct: 376 KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQK 435

Query: 305 AKKIQSKIRMAK 316
           A ++  +  MAK
Sbjct: 436 AIRVWKE--MAK 445



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 130/297 (43%), Gaps = 55/297 (18%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            ++ +++GL K   ++ A+ +++ + + G  P +V Y+ LI GLC+ G+L  A+ IL E+
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PNA TY++++K  F+    +  + +   M +     +   Y  +I    + G+L
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 468

Query: 132 KEATDYMEQMVTDGV-------------------------------------QLDIVSYN 154
           +EA      M+  G+                                     Q D+V+YN
Sbjct: 469 REAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 528

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
            L+   CK+  +  A  LL+ M  +G   D  T  I ++ L +  N    +   E++++ 
Sbjct: 529 ILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLN--PPQDGREFLDE- 585

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
                      +V RL K  +I  A  + E M  K    ++ T+  ++  LCK K++
Sbjct: 586 -----------LVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKV 631



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGL--QKHGFVPELVTYNILIKGLCKAGRLRT 63
           L P    ++ M++GLC     +  L++F  +  Q+    P++VTYNIL++ LCK   +  
Sbjct: 483 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISH 542

Query: 64  ARWILKELGDSGHAPNAIT 82
           A  +L  + D G  P+ IT
Sbjct: 543 AIDLLNSMLDRGCNPDLIT 561



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLIN 158
            ++   MKR+   F    +  V  A+ K    ++A +   +MV +   +  + S+N+++N
Sbjct: 84  FQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLN 143

Query: 159 LYCKEGKLEAAYLLLDEME-----KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           +  +EG    A   L+  E     K     +  +  ++I  +CK G +  A      M  
Sbjct: 144 VIIQEGLFHRA---LEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAI 200

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAKRLPS 269
              + ++  Y  ++D L K+ +ID A+ + + M+++  F    T++ +++ LCK   +  
Sbjct: 201 QKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVR 260

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +KL+ +    G    +     +++GL
Sbjct: 261 VTKLVDNMFLKGCVPNEVTYNTIINGL 287



 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1   MIC--GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 55
           M+C   D  P   T+NI+L  LCK     +A+ +   +   G  P+L+T NI +  L
Sbjct: 513 MLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 146/288 (50%), Gaps = 4/288 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN M++G+C+    D A  + R + + G  P++ TY  LI+GLC+ GR+  AR + +++
Sbjct: 153 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 212

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PNA+ +T ++    +    +  LE+   M+ +G   D   Y  ++    +   L
Sbjct: 213 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 272

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           K A+  + +M + G++ D V+Y TLI+ YCKE +L+ A  +   M  +G   D+ T+T L
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 332

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           I GL KAG    A   L  M + G + +   Y  ++D   + G +   + + + M+ K  
Sbjct: 333 ISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGR 392

Query: 252 ----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
                TY+ +++  CK  ++ +A  LL + +  GV         ++DG
Sbjct: 393 KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDG 440



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 141/267 (52%), Gaps = 4/267 (1%)

Query: 2   ICG-DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +CG  + P    F I+++  CK    +  L + R +++ G  P+ VTYN ++ GLC+A  
Sbjct: 212 MCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARD 271

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L++A  I+ E+  +G  P+ +TYTT++    +  +  + +EI   M  +G   D   Y  
Sbjct: 272 LKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTA 331

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   K GR  +A   + +M+  G++ D  +Y  +I+ +C++G ++    LL EM+ +G
Sbjct: 332 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 391

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ ++++G CK G +K A + L  M  IG   +   YN ++D   K GK+   I
Sbjct: 392 RKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTD-I 450

Query: 241 NVFESME--VKDSFTYSSMVHNLCKAK 265
              +S +  V D   Y+S+V  + K K
Sbjct: 451 EELKSAKGTVPDLGVYTSIVGEIVKKK 477



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G  PE   +N+L++ L + G L +A+ +  E+   G     +++ T++    R       
Sbjct: 111 GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGA 170

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             +   M   G T D + Y  +I    ++GR+++A    E+M   G++ + V +  LI+ 
Sbjct: 171 ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDA 230

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK+G  E    L  EM ++G   D  T+  +++GLC+A ++K A   +  M   G   +
Sbjct: 231 HCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPD 290

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+ ++D A+ + ++M  +    D  TY++++  L KA R   A ++L 
Sbjct: 291 TVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG 350

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
             +++G+    +    V+D      CR+    +++ +R+ K
Sbjct: 351 EMMEAGLEPDNTTYTMVIDAF----CRK--GDVKTGLRLLK 385



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 117/254 (46%), Gaps = 6/254 (2%)

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +L D+G  P A  +  +M+   R  +      +   M+ +G       + T+I+   + G
Sbjct: 106 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 165

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L  A     +M   GV  D+ +Y  LI   C+ G++E A  + ++M  +G + +    T
Sbjct: 166 DLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFT 225

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           ILID  CK G+ +    LH E M + G   +   YN IV+ L +   +  A  +   M  
Sbjct: 226 ILIDAHCKKGDAETMLELHRE-MRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS 284

Query: 249 ----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                D+ TY++++   CK + L  A ++  + +  GV + +    A++ GL  +G   +
Sbjct: 285 AGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSAD 344

Query: 305 AKKIQSKIRMAKIS 318
           A+++  ++  A + 
Sbjct: 345 AERVLGEMMEAGLE 358



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 43/227 (18%)

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA  +  Q++  G+  +   +N L+    + G+L +A  + DEM+ +G      +   +
Sbjct: 98  PEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTM 157

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----- 246
           I G+C+AG++ GA      M++ G   ++  Y  ++  L + G+I+ A  VFE M     
Sbjct: 158 ISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGM 217

Query: 247 ----------------------------EVK------DSFTYSSMVHNLCKAKRLPSASK 272
                                       E++      D+ TY+++V+ LC+A+ L SAS 
Sbjct: 218 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 277

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
           +++    +G+R        ++DG     C+ E   +  +I+   ++ 
Sbjct: 278 IVVEMRSAGLRPDTVTYTTLIDGY----CKEEELDMAMEIKQNMVAE 320



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 3/127 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+ ++++  C+       LR+ + +Q  G  P +VTYN+++ G CK G+
Sbjct: 352 MMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 411

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +L  + + G +P+ ITY  ++    ++ K     E+ SA   KG   D   Y +
Sbjct: 412 MKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSA---KGTVPDLGVYTS 468

Query: 121 VIAAFVK 127
           ++   VK
Sbjct: 469 IVGEIVK 475


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 147/295 (49%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G C     + A      + K G +P + TYN+L+  L   GR+  A 
Sbjct: 274 LVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEAD 333

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++KE+   G  P+AITY  ++    R    K   ++ + M  KG       Y ++I   
Sbjct: 334 DMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVL 393

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R+KEA D  E+++  GV  D++ +N +I+ +C  G +E A++LL EM+++    D+
Sbjct: 394 SRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDE 453

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L+ G C+ G ++ AR+ L+ M   G   +  +YN ++   G+ G I  A  V + 
Sbjct: 454 VTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDE 513

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M          TY++++  LCK +    A +LL   +  G+    S   ++++G+
Sbjct: 514 MLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 568



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 136/271 (50%), Gaps = 4/271 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  +T+N++++ L        A  M + ++K G +P+ +TYNILI G  + G 
Sbjct: 304 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGN 363

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +  E+   G  P  +TYT+++    R  + K   ++   +  +G + D   +  
Sbjct: 364 AKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNA 423

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G ++ A   +++M    V  D V++NTL+   C+EGK+E A +LLDEM+ +G
Sbjct: 424 MIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRG 483

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  ++  LI G  + G+IK A    + M  IGF+  L  YN ++  L K+ + D A 
Sbjct: 484 IKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAE 543

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRL 267
            + + M  K    D  TY S++  +     L
Sbjct: 544 ELLKEMVNKGISPDDSTYLSLIEGMGNVDTL 574



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 4/241 (1%)

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           G+L+ AR  +  +   G  PN ++Y TI+         +    IL AM+ KG   D + Y
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            ++I+   K GRL+EA+   ++MV  G+  + V+YNTLI+ YC +G LE A+   DEM K
Sbjct: 247 GSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 306

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G      T+ +L+  L   G +  A   ++ M K G   +   YN +++   + G    
Sbjct: 307 KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKR 366

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A ++   M  K       TY+S+++ L +  R+  A  L    L  GV        A++D
Sbjct: 367 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMID 426

Query: 295 G 295
           G
Sbjct: 427 G 427



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
           K K   E +  M+  G+  +   Y T+I  +   G ++ A   ++ M   G++ D  +Y 
Sbjct: 188 KLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYG 247

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +LI+  CKEG+LE A  L D+M + G   +  T+  LIDG C  G+++ A  + + M K 
Sbjct: 248 SLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 307

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G   ++  YN +V  L  +G++  A ++ + M     + D+ TY+ +++   +      A
Sbjct: 308 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRA 367

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             L    L  G+        +++  L      +EA  +  KI
Sbjct: 368 FDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI 409



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN ++ G C+    + A  +   ++  G  P+ ++YN LI G  + G ++ A 
Sbjct: 449 VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAF 508

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P  +TY  ++KC  +N++  L  E+L  M  KG + D   Y ++I   
Sbjct: 509 XVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 568

Query: 126 VKIGRLKE 133
             +  L E
Sbjct: 569 GNVDTLVE 576



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 16/217 (7%)

Query: 113 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVT----------DGVQL--DIVSYNTLINLY 160
            D   YC  +    ++   K A   ++Q++           D + L  D +S  + I   
Sbjct: 124 LDTKSYCLAVVLLARLPSPKLALQLLKQVMETRIATNRELFDELTLSRDRLSVKSSIVFD 183

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
             EGKL+ A   +  ME  GF+ +  ++  +I G    GNI+GAR  L+ M   G + + 
Sbjct: 184 LLEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDS 243

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
             Y  ++  + K+G+++ A  +F+ M     V ++ TY++++   C    L  A      
Sbjct: 244 YTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDE 303

Query: 277 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            +K G+    S    +V  L   G   EA  +  ++R
Sbjct: 304 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMR 340


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 124/242 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G   ++ TY++LI GLCKA ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +NR+  + +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   + G +   + + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 111/205 (54%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK  R+  A  I K++
Sbjct: 208 TYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQM 267

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                +P+ ITY T++    +    K   +++  M  KG   D   Y T+I    K G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDL 327

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G + +  T+T++
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGF 216
           I+  C+ G++      L+ M + G+
Sbjct: 388 INEFCEKGDVWTGLKLLKEMQRDGY 412



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKNR  D A+ +++ +      P+L+TYN LI GLCK G 
Sbjct: 232 MLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A+ ++ E+   G  P+ ITYTT++    +    +   E    M ++    D   Y  
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ +I +Y  +IN +C++G +     LL EM++ G
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQRDG 411

Query: 181 F 181
           +
Sbjct: 412 Y 412



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK  +++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R +++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLIKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CK  K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK   +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   C+ G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ P+ +T
Sbjct: 407 MQRDGYMPSVVT 418


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 119/227 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +   G  P++ TY+ILI GLCK G+L  A 
Sbjct: 167 LRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N K  L +EI   M  +G + D   Y T+I   
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+  D +++M+ +G++ D +SY TLI+  CKEG LE A  L ++M ++    D 
Sbjct: 287 CKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
             +T LI  LC+ G    A   L  M  +G   +   Y  I++   K
Sbjct: 347 VAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCK 393



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 144/302 (47%), Gaps = 10/302 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L + RY       ++ + + G+   L  +NIL++  CK G +R A+ +   +   G
Sbjct: 107 VLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T++    +      G  + SAM   G   D + Y  +I    K G+L EA 
Sbjct: 167 LRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +   +M+ +G+  + V++ TLI+ +CK  K++ A  +  +M  QG   D  T+  LI GL
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G +K     ++ M   G   +  +Y  ++D   K+G ++ A+      + ES+ + D
Sbjct: 287 CKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRL-D 345

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
              Y++++  LC+  R   A K+L   L  G++        +++      C++   K  S
Sbjct: 346 DVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEF----CKKRDSKTAS 401

Query: 311 KI 312
           K+
Sbjct: 402 KL 403



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 108/208 (51%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I++NGLCK    D A  +F  +  +G VP  VT+  LI G CK  ++  A  I
Sbjct: 204 PDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEI 263

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++   G +P+ ITY T++    +  + K   +++  M   G   D   Y T+I    K
Sbjct: 264 YKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCK 323

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A +   +M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G + D  T
Sbjct: 324 EGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGT 383

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +T++I+  CK  + K A   L  M + G
Sbjct: 384 YTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 99/180 (55%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +   G  P+L+TYN LI GLCK G 
Sbjct: 232 MLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGE 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+    ++ E+  +G  P+ I+YTT++    +    ++ LE+ + M ++    D   Y  
Sbjct: 292 LKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTA 351

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+   + A  LL EM++ G
Sbjct: 352 LISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++ LC+     +A +M R +   G  P+  TY ++I   CK    +TA  +L+E
Sbjct: 347 VAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLRE 406

Query: 71  LGDSGHAPNAIT 82
           +   G  P  +T
Sbjct: 407 MQRDGPVPGVVT 418


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 151/322 (46%), Gaps = 4/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N M++G  K    +   R+   +   G  P +VTYN+L+ GLC+ GR
Sbjct: 220 MVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGR 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   R ++ E+      P+  TY+ +     R  + +  L + +   +KG     +    
Sbjct: 280 MDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSI 339

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G++ +A    E +V  G+    V YNTLIN YC+   L  A+ + ++M+ + 
Sbjct: 340 LLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI+GLCK   +  A   +  M K G D ++E +N ++D  G  G+++   
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   M+ K    D  ++ S+V   CK  ++P A  +L   +   V        +++D  
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
             SG   +A  +  K++ + +S
Sbjct: 520 IESGDTEQALLLVEKMKNSGVS 541



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 4/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T++I+ +GL +   +   L +F    K G +    T +IL+ GLCK G+
Sbjct: 290 MASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGK 349

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ + + L  +G  P  + Y T++    + R  +    I   MK +    D   Y  
Sbjct: 350 VAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNA 409

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+  + +A D + +M   GV   + ++NTLI+ Y   G+LE  + +L +M+++G
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG 469

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  +   ++   CK G I  A   L+ M       N + YN I+D   + G  + A+
Sbjct: 470 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAL 529

Query: 241 NVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            + E M+   V  S  TY+ ++  LC++ ++  A +L+ +    G+R
Sbjct: 530 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLR 576



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 119/252 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGLCK      A  +   ++K G  P + T+N LI     AG+L    
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G   + I++ +++K   +N K    + IL  M  K    +   Y ++I A+
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++ G  ++A   +E+M   GV   IV+YN L+   C+  +++ A  L+  +  QG   D 
Sbjct: 520 IESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 579

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  +I   C  G+   A   L+ MNK G    L   + +V  L   G++     +++ 
Sbjct: 580 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQ 639

Query: 246 MEVKDSFTYSSM 257
           M  K+    SS+
Sbjct: 640 MLHKNVEPSSSI 651



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 6/247 (2%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
           +P L + N+L++ L   GR    R     L  +G  P+   +  +++ C       + L 
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 102 ILSAMKRK--GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           +L  M R       D F Y  VIA   + G+  +A    ++MV  GV  + ++YNT+I+ 
Sbjct: 179 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDG 238

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           + K G LEA + L D+M   G + +  T+ +L+ GLC+ G +   R  ++ M       +
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPD 298

Query: 220 LEAYNCIVDRLGKDGKIDHAINVF-ESME---VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y+ + D L + G+    +++F ES++   +  ++T S +++ LCK  ++  A ++  
Sbjct: 299 GFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFE 358

Query: 276 SCLKSGV 282
             + +G+
Sbjct: 359 MLVHTGL 365



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 3/234 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN +++        +    +   +Q+ G   +++++  ++K  CK G++  A 
Sbjct: 435 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAV 494

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL ++     APNA  Y +I+     +   +  L ++  MK  G +     Y  ++   
Sbjct: 495 AILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGL 554

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  ++ EA + +  +   G++ D+VSYNT+I+  C +G  + A  LL EM K G     
Sbjct: 555 CRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTL 614

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKI 236
            T   L+  L  AG +       + M     + +   Y  +VD   R   D K+
Sbjct: 615 RTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKV 668



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D+ P    +N +++   ++  T+ AL +   ++  G    +VTYN+L+KGLC++ +
Sbjct: 500 MIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 559

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++  L + G  P+ ++Y TI+  C         LE+L  M + G         T
Sbjct: 560 IDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHT 619

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++A    GR+ +     +QM+   V+     Y  +++ Y +         L  EM ++G
Sbjct: 620 LVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 679

Query: 181 FECD 184
              D
Sbjct: 680 IAFD 683


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 153/322 (47%), Gaps = 4/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NIM++ +CK    + A  +F  ++  G VP+ VTYN +I G  K GR
Sbjct: 253 MIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGR 312

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L       +E+ D    P+ ITY  ++ C  +  K  +GLE    MK  G   +   Y T
Sbjct: 313 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K G +++A  +   M   G+  +  +Y +LI+  CK G L  A+ L +EM + G
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 432

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+T LIDGLC A  +K A      M+  G   NL +YN ++    K   +D A+
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ++ +    D   Y + +  LC  +++ +A  ++    + G++        ++D  
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
             SG   E   +  +++   I 
Sbjct: 553 FKSGNPTEGLHLLDEMKELDIE 574



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 1/242 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P  A++N +++G  K +  D AL +   L+  G  P+L+ Y   I GLC   ++  A+
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAK 527

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ + G   N++ YTT+M   F++     GL +L  MK          +C +I   
Sbjct: 528 VVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 587

Query: 126 VKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            K   + +A DY  ++  D G+Q +   +  +I+  CK+ ++EAA  L ++M ++G   D
Sbjct: 588 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +  +T L+DG  K GN+  A    + M +IG   +L AY  +V  L    ++  A +  E
Sbjct: 648 RTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 707

Query: 245 SM 246
            M
Sbjct: 708 EM 709



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 152/317 (47%), Gaps = 7/317 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +++ +++  CK      A++ +  +++ G VP   TY  LI   CK G L  A 
Sbjct: 363 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAF 422

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G   N +TYT ++       + K   E+   M   G   +   Y  +I  F
Sbjct: 423 RLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGF 482

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK   +  A + + ++   G++ D++ Y T I   C   K+EAA ++++EM++ G + + 
Sbjct: 483 VKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANS 542

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T L+D   K+GN       L+ M ++  +  +  +  ++D L K+  +  A++ F  
Sbjct: 543 LIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 602

Query: 246 ME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +        ++  +++M+  LCK  ++ +A+ L    ++ G+   ++A  +++DG    G
Sbjct: 603 ISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQG 662

Query: 301 CRREAKKIQSKIRMAKI 317
              EA  ++ K  MA+I
Sbjct: 663 NVLEALALRDK--MAEI 677



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 135/293 (46%), Gaps = 39/293 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T + N +L+   K   TD+  R F+ +   G  P + TYNI+I  +CK G +  AR +
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGL 284

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  P+ +TY +++                          DGFG         K
Sbjct: 285 FEEMKFRGLVPDTVTYNSMI--------------------------DGFG---------K 309

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GRL +   + E+M     + D+++YN LIN +CK GKL        EM+  G + +  +
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV-FESM 246
           ++ L+D  CK G ++ A      M ++G   N   Y  ++D   K G +  A  +  E +
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 429

Query: 247 EV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +V    +  TY++++  LC A+R+  A +L      +GV    ++  A++ G 
Sbjct: 430 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGF 482



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           D+     TF ++++GLCKN+    A+  F R     G       +  +I GLCK  ++  
Sbjct: 572 DIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEA 631

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + +++   G  P+   YT++M   F+       L +   M   G   D   Y +++ 
Sbjct: 632 ATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVW 691

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIV 151
                 +L++A  ++E+M+ +G+  D V
Sbjct: 692 GLSHCNQLQKARSFLEEMIGEGIHPDEV 719


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 154/309 (49%), Gaps = 4/309 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+NI++ G C     D ALR F  ++K G +P +VTYN LI G CK  +
Sbjct: 196 MLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRK 255

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L+ +   G  PN I+Y  ++    R  + K    +L+ M ++GY+ D   Y T
Sbjct: 256 IDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNT 315

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G   +A     +M+  G+   +++Y +LI+  CK G +  A   LD+M  +G
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRG 375

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++ T+T L+DG  + G +  A   L+ M   GF  ++  YN +++     GK+  AI
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAI 435

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V E M+ K    D  +YS+++   C++  +  A ++    +  G++       +++ G 
Sbjct: 436 AVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGF 495

Query: 297 RHSGCRREA 305
                 +EA
Sbjct: 496 CEQRRTKEA 504



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 150/311 (48%), Gaps = 7/311 (2%)

Query: 8   PCTATFNIMLNGLCKN-RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   ++N +L+   ++ R    A  +F+ + +    P + TYNILI+G C AG L  A  
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALR 226

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
               +   G  PN +TY T++    + RK   G E+L +M  KG   +   Y  VI    
Sbjct: 227 FFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLC 286

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR+KE +  + +M   G  LD V+YNTLI  YCKEG    A ++  EM + G      
Sbjct: 287 REGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVI 346

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LI  +CKAGN+  A   L+ M   G   N   Y  +VD   + G ++ A  V + M
Sbjct: 347 TYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEM 406

Query: 247 EVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            + + F     TY+++++  C A ++  A  +L    + G+     +   V+ G   S  
Sbjct: 407 -IDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYD 465

Query: 302 RREAKKIQSKI 312
             EA +++ K+
Sbjct: 466 VDEALRVKRKM 476



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 155/326 (47%), Gaps = 19/326 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G  +  Y + A R+ + +  +GF P +VTYN LI G C AG++  A 
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAI 435

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+++ + G  P+ ++Y+T++    R+      L +   M  KG   D   Y ++I  F
Sbjct: 436 AVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGF 495

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R KEA D  ++M+  G+  D  +Y  LIN YC EG L+ A  L +EM ++G   D 
Sbjct: 496 CEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDV 555

Query: 186 YTHTILIDGLCKAGNIKGAR---LHLEYMNKIGFD----------SNLEAYNCI--VDRL 230
            T+++LI+GL K    + A+   L L Y   +  D          SN+E  + +  +   
Sbjct: 556 VTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGF 615

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
              G +  A  VFESM  K    D   Y+ M+H  C+   +  A  L    +KSG  +  
Sbjct: 616 CMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHT 675

Query: 287 SAQKAVVDGLRHSGCRREAKKIQSKI 312
               A+V  L   G   E   + + +
Sbjct: 676 VTVIALVKTLHKEGKVNELNSVIANV 701



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 152/311 (48%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N+++NGLC+         +   + K G+  + VTYN LIKG CK G    A 
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQAL 330

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G +P+ ITYT+++    +        E L  M+ +G   +   Y T++  F
Sbjct: 331 VMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA   +++M+ +G    +V+YN LIN +C  GK+  A  +L++M+++G   D 
Sbjct: 391 SQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDV 450

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +++ ++ G C++ ++  A      M   G   +   Y+ ++    +  +   A ++F+ 
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDE 510

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D FTY+++++  C    L  A +L    ++ GV         +++GL     
Sbjct: 511 MLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQAR 570

Query: 302 RREAKKIQSKI 312
            REAK++  K+
Sbjct: 571 TREAKRLLLKL 581



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 141/300 (47%), Gaps = 21/300 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   T+N ++NG C      +A+ +   +++ G  P++V+Y+ ++ G C++  
Sbjct: 406 MIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYD 465

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +++   G  P+ ITY+++++     R+ K   ++   M R G   D F Y  
Sbjct: 466 VDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTA 525

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL-EAAYLLLDEMEKQ 179
           +I A+   G L++A     +MV  GV  D+V+Y+ LIN   K+ +  EA  LLL    ++
Sbjct: 526 LINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEE 585

Query: 180 GFECDKYTHTI--------------LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
               D   HT+              LI G C  G +  A    E M +     +  AYN 
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNV 645

Query: 226 IVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKS 280
           ++    + G I  A ++++ M VK  F     T  ++V  L K  ++   + ++ + L+S
Sbjct: 646 MIHGHCRGGDIRKAYSLYKEM-VKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRS 704



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 9/209 (4%)

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR-LKEATDYMEQMVTDGVQLDIVSYNTLI 157
            L I+   +  G+      Y  V+ A ++  R +  A +  ++M+   V  ++ +YN LI
Sbjct: 153 ALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILI 212

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
             +C  G L+ A    D MEK+G   +  T+  LIDG CK   I      L  M   G +
Sbjct: 213 RGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLE 272

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
            NL +YN +++ L ++G++     V   M  +    D  TY++++   CK      A  +
Sbjct: 273 PNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
               L+ G+    S        L HS C+
Sbjct: 333 HAEMLRHGL----SPSVITYTSLIHSMCK 357



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 15/196 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI-------- 52
           M+   + P   T+++++NGL K   T  A R+   L     VP  VTY+ LI        
Sbjct: 546 MVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF 605

Query: 53  -------KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
                  KG C  G +  A  + + + +  H P+   Y  ++    R    +    +   
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKE 665

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M + G+         ++    K G++ E    +  ++      +      L+ +  +EG 
Sbjct: 666 MVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINHREGN 725

Query: 166 LEAAYLLLDEMEKQGF 181
           ++    +L EM K GF
Sbjct: 726 MDVVLDVLAEMAKDGF 741



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 50/108 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N+M++G C+      A  +++ + K GF+   VT   L+K L K G++     +
Sbjct: 638 PDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSV 697

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
           +  +  S     A     +++   R     + L++L+ M + G+  +G
Sbjct: 698 IANVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNG 745


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 123/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+    +M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 115/216 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 9/219 (4%)

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           GY    + +  ++ +FVK G ++ A    + +    ++  +VS+NTL+N Y K G L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           + L + M+  G + D YT+++LI+GLCK   +  A    + M   G   N   +  ++D 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K+G++D A+ +++ M  +    D  TY+++++ LCK   L  A  L+      G++  
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 286 KSAQKAVVDGLRHSGCRREA-----KKIQSKIRMAKISH 319
           K     ++DG    G    A     K I+  IR+  +++
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAY 349



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYMPSVVT 418


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 1/250 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A      M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 MEVKDSFTYS 255
           M+ +D +  S
Sbjct: 407 MQ-RDGYVPS 415



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    ++A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A  Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 123/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++++A +  E+M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G++  A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLIIAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K+E A  L +EM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A       +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ P+ +T
Sbjct: 407 MQRDGYVPSVVT 418


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 148/313 (47%), Gaps = 18/313 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T NI+LN LC        L +  G+ + G++P++VTY  LIKGLC   R+  A 
Sbjct: 127 ISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAA 186

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL----EILSAMKRKGYTFDG--FGYC 119
            +   +   G  PNAITY T+MK   R     + L    E+L+     G  F      Y 
Sbjct: 187 LLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYS 246

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I A  K  R  EA D  E+M   G+   ++SY +L+         E A  L +EM  Q
Sbjct: 247 IIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQ 298

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + +  T  +LID LCK G +  A+  LE M + G   NL  YN +++     G ++ A
Sbjct: 299 GVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSA 358

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F SM  K    D   Y+ +++  CK  ++  A KL    L+ G R       A++ G
Sbjct: 359 RELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTG 418

Query: 296 LRHSGCRREAKKI 308
           L   G   +AKK+
Sbjct: 419 LFQGGKVGDAKKL 431



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 145/309 (46%), Gaps = 13/309 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN++++ LCK      A  +   + + G VP L+TYN LI+G C  G 
Sbjct: 295 MVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGD 354

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +AR +   +   G  P+ I YT ++    +  K +  +++ + M + G   D   Y  
Sbjct: 355 LNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGA 414

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G++ +A      M   G+  D+  Y   +N  CK G L  A  L ++++   
Sbjct: 415 LLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYN 474

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D      LIDGLCKAG ++ A    E + +     ++  YN ++    + G++  A 
Sbjct: 475 IKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKAN 534

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F+ ME      D  TY++++    ++K+L    +LL   ++  V +        V+ L
Sbjct: 535 ILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSL-------DVNIL 587

Query: 297 RHSGCRREA 305
           RH+  RR A
Sbjct: 588 RHN--RRHA 594



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 43/344 (12%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNAL---------------------------RMFRGLQ 37
           +  P   +++I+++ LCK+R  D A                            R+F  + 
Sbjct: 237 NFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMV 296

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
             G  P +VT+N+LI  LCK G++  A+ +L+ +   G  PN +TY ++++         
Sbjct: 297 NQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLN 356

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
              E+  +M  KG   D   Y  +I  + K  +++EA      M+  G + D+ +Y  L+
Sbjct: 357 SARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALL 416

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--- 214
               + GK+  A  L   M+  G   D Y + I ++GLCK G +  A   +E  NK+   
Sbjct: 417 TGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEA---MELFNKLKSY 473

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
               ++E +NC++D L K GK++ A  +FE +  +    D  TY+ M+H  C+  ++  A
Sbjct: 474 NIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKA 533

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           + L     K+G    K     ++ G        E+KK++  + +
Sbjct: 534 NILFQKMEKNGCTPDKITYATLIRGF------FESKKLEKVVEL 571



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 39/291 (13%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A + F  +      P L ++  L+ GL K        ++  ++  SG +P+  T   ++ 
Sbjct: 80  AFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLN 139

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           C     +   GL +++ + R+GY  D   Y T+I       R+ +A     +M   G   
Sbjct: 140 CLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTP 199

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG------FECDKYTHTILIDGLCK----- 197
           + ++Y TL+   C+ G +  A  L  EM          F+    +++I+ID LCK     
Sbjct: 200 NAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRED 259

Query: 198 -------AGNIKGA----------------RLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                     ++G                 RL  E +N+ G   N+  +N ++D L K+G
Sbjct: 260 EARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQ-GVQPNVVTFNVLIDVLCKEG 318

Query: 235 KIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           K+  A ++ E M     V +  TY+S++   C    L SA +L +S    G
Sbjct: 319 KVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKG 369


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 153/317 (48%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L+P   T+N+++  L +    + A  +F  ++  G  P++VTYN LI G  K G 
Sbjct: 242 MVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGM 301

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + +E+ D+G  P+ ITY +++ C  +  +     E L  MK++G   +   Y T
Sbjct: 302 LTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYST 361

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I AF K G L EA  +   M+  G+Q +  +Y +LI+  CK G L  A+ L  EM++ G
Sbjct: 362 LIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAG 421

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T L+DGLC+ G ++ A      + K G+  N + Y  +     K   ++ A+
Sbjct: 422 VNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAM 481

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ E M  K    D   Y + +  LC+   +  +  ++   +  G+         ++D  
Sbjct: 482 DILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAY 541

Query: 297 RHSGCRREAKKIQSKIR 313
              G   EA  +  +++
Sbjct: 542 FKVGKTTEAVNLLQEMQ 558



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ + N L      + A + F  + K   +P++ + N L+  L K+ +   A   
Sbjct: 179 PGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSF 238

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++  +G +P+  TY  ++ C  R    +    +   MK KG   D   Y ++I  + K
Sbjct: 239 FKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGK 298

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G L  A    E+M   G + D+++YN+LIN +CK  ++  A+  L  M+++G + +  T
Sbjct: 299 VGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVT 358

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LID  CKAG +  A      M ++G   N   Y  ++D   K G ++ A  +   M+
Sbjct: 359 YSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQ 418

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                 +  TY++++  LC+  R+  A +L  + LK+G
Sbjct: 419 QAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAG 456



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 145/316 (45%), Gaps = 6/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++ +++  CK      A + F  + + G  P   TY  LI   CK G L  A 
Sbjct: 352 LQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAF 411

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  +G   N +TYT ++     + + +   E+  A+ + G+T +   Y ++   +
Sbjct: 412 KLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGY 471

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K   +++A D +E+M    ++ D++ Y T I   C++ ++E +  ++ EM   G   + 
Sbjct: 472 IKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANS 531

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           Y +T LID   K G    A   L+ M  +G    +  Y  ++D L K G +  A+  F+ 
Sbjct: 532 YIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDH 591

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       +   Y++++  LCK   L  A  L    L  G+   K    +++DG    G 
Sbjct: 592 MTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGN 651

Query: 302 RREAKKIQSKIRMAKI 317
             EA  +++  RM +I
Sbjct: 652 PGEALSLRN--RMVEI 665



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 147/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+  +++  CK    + A ++   +Q+ G    +VTY  L+ GLC+ GR
Sbjct: 382 MIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGR 441

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A  +   L  +G   N   YT++     + +  +  ++IL  M +K    D   Y T
Sbjct: 442 MREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGT 501

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I    +   ++++   + +M+  G+  +   Y TLI+ Y K GK   A  LL EM+  G
Sbjct: 502 KIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLG 561

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ +LIDGLCK G ++ A  + ++M + G   N+  Y  ++D L K+  ++ A 
Sbjct: 562 IKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAK 621

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           N+F  M  K    D   Y+S++    K      A  L    ++ G+ +   A  +++ G 
Sbjct: 622 NLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGF 681

Query: 297 RHSGCRREAKKI 308
              G  + AK +
Sbjct: 682 SRYGQVQLAKSL 693



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 114/234 (48%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  + +G  K +  + A+ +   + K    P+L+ Y   I GLC+   +  +  +++E+ 
Sbjct: 464 YTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMM 523

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G   N+  YTT++   F+  K    + +L  M+  G       Y  +I    KIG ++
Sbjct: 524 DCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQ 583

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A  Y + M  +G+Q +I+ Y  LI+  CK   LE A  L +EM  +G   DK  +T LI
Sbjct: 584 QAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLI 643

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           DG  K GN   A      M +IG + +L AY  ++    + G++  A ++ + M
Sbjct: 644 DGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEM 697



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 4/189 (2%)

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A  + + MV  G+   + +YN +I    +EG LEAA  L +EM+ +G   D  T+  LID
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           G  K G + GA    E M   G + ++  YN +++   K  +I  A      M+ +    
Sbjct: 295 GYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQP 354

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           +  TYS+++   CKA  L  A+K  +  ++ G++  +    +++D     G   EA K++
Sbjct: 355 NVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLE 414

Query: 310 SKIRMAKIS 318
           S+++ A ++
Sbjct: 415 SEMQQAGVN 423



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 26/266 (9%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M CG LT  +  +  +++   K   T  A+ + + +Q  G    +VTY +LI GLCK G 
Sbjct: 523 MDCG-LTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGL 581

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A      +  +G  PN + YT ++    +N   +    + + M  KG + D   Y +
Sbjct: 582 VQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTS 641

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I   +K G   EA     +MV  G++LD+ +Y +LI  + + G+++ A  LLDEM ++G
Sbjct: 642 LIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKG 701

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D+     L+    + G+I  A  LH                    D + + G I   
Sbjct: 702 IIPDQVLCICLLRKYYELGDINEALALH--------------------DDMARRGLISGT 741

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAK 265
           I++     V    T  + +H LC ++
Sbjct: 742 IDI----TVPSCLTAVTKLHKLCASQ 763


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 156/317 (49%), Gaps = 10/317 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NI+LN LC           F G+ + G+ P +VTYN LIKGLC   R+  A  +   +
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165

Query: 72  GDSGHAPNAITYTTIMK-CCFR---NRKYKLGLEILSAMKRKGYT--FDGFGYCTVIAAF 125
              G  P+ +TY T++K  C     N   KL  E+L+ + R       +   Y  ++   
Sbjct: 166 QKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGL 225

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+GR  EA    E+M T G+   I+SYN+LI+ +C  GK E +  LLDEM  QG + D 
Sbjct: 226 CKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDM 285

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  +LID LCK G +  A+  L  M + G   +L  YN +++     G ++ A  +F S
Sbjct: 286 VTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVS 345

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D  +Y+ +++   K  ++  A KL    L  G R       +++ G+  +G 
Sbjct: 346 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK 405

Query: 302 RREAKKIQSKIRMAKIS 318
             +AKK+ S ++   I+
Sbjct: 406 VDDAKKLFSVMKAHGIA 422



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 155/317 (48%), Gaps = 10/317 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N ++ GLC       A R+F  +QK G  P++VTY  LIKGLC  G +  A  
Sbjct: 136 SPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALK 195

Query: 67  ILKE-LGDSGH-----APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +E L D         PN ITY  I+    +  +     ++   MK +G       Y +
Sbjct: 196 LHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNS 255

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F   G+ +E+   +++M+  G+Q D+V++N LI+  CKEGK+  A  LL  M + G
Sbjct: 256 LIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESG 315

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI+G C  G++  AR     M   G + ++ +YN +++   K  K++ A+
Sbjct: 316 IVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAM 375

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ++  M +     +  TY S++  +  A ++  A KL       G+          +DGL
Sbjct: 376 KLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGL 435

Query: 297 RHSGCRREAKKIQSKIR 313
             + C  EA K+ ++++
Sbjct: 436 CKNDCLFEAMKLFTELK 452



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 141/306 (46%), Gaps = 39/306 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+++GLCK    D A ++F  ++  G +P +++YN LI G C AG+   ++ +
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRL 272

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+ D G  P+ +T+  ++    +  K     ++L  M   G   D   Y ++I  F  
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE------------ 175
           +G L  A +    M + G + D++SYN LIN Y K  K+E A  L +E            
Sbjct: 333 VGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVIT 392

Query: 176 -----------------------MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                                  M+  G   + YT+ I +DGLCK   +  A      + 
Sbjct: 393 YDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELK 452

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
              F   +E  NC++D L K GK++ A  +FE +  +    +  TY+ M+H  C+  ++ 
Sbjct: 453 SSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVD 512

Query: 269 SASKLL 274
            A+ L+
Sbjct: 513 KANVLI 518



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 122/250 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N ++ G C     ++A  +F  +   G  P++++YN+LI G  K  +
Sbjct: 311 MIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLK 370

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+   G  PN ITY +++K  F   K     ++ S MK  G   + + Y  
Sbjct: 371 VEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGI 430

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +    K   L EA     ++ +   +L+I + N LI+  CK GKLE A+ L +++  +G
Sbjct: 431 FLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG 490

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+TI+I G C+ G +  A + ++ M   G   ++  YN ++    +  K++  +
Sbjct: 491 HEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVV 550

Query: 241 NVFESMEVKD 250
            +   M  KD
Sbjct: 551 QLLHRMAQKD 560



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 133/278 (47%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TFN++++ LCK      A ++   + + G VP+LVTYN LI+G C  G 
Sbjct: 276 MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGD 335

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +AR +   +   G  P+ I+Y  ++    +  K +  +++ + M   G   +   Y +
Sbjct: 336 LNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 395

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G++ +A      M   G+  +  +Y   ++  CK   L  A  L  E++   
Sbjct: 396 LLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSN 455

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F+ +      LIDGLCKAG ++ A    E ++  G + N+  Y  ++    ++G++D A 
Sbjct: 456 FKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKAN 515

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + + ME      D  TY++++    ++ +L    +LL
Sbjct: 516 VLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLL 553



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           N    +AL  F  + +    P L ++N L+ GL K         +  ++  SG + +  T
Sbjct: 47  NVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
              ++ C     + + G    + + R+GY+ +   Y T+I       R+ EAT    +M 
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLL----LDEMEKQGFEC--DKYTHTILIDGLC 196
             G   D+V+Y TLI   C  G +  A  L    L+++ +    C  +  T+ I++DGLC
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSF 252
           K G    A+   E M   G   ++ +YN ++      GK + +  + + M  +    D  
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMV 286

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           T++ ++  LCK  ++  A KLL   ++SG+        ++++G    G    A+++
Sbjct: 287 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSAREL 342


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 122/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 114/215 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            + +  T+T++I+  CK G++      L+ M + G
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G  P+ +T
Sbjct: 409 RDGCMPSVVT 418


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 138/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ATFN ++ GLC        L +F  +   GF P +VTY  LI GLCK G    A  +
Sbjct: 136 PNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRL 195

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      P+ + YT+I+    ++R+      + S M  +G +   F Y ++I A   
Sbjct: 196 LRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCN 255

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  + +MV   +  ++V ++T+++  CKEGK+  A+ ++D M K+G E +  T
Sbjct: 256 LCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVT 315

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +  L+DG C    +  A    + M   GF  ++ +Y+ +++   K  +I+ A+ +FE M 
Sbjct: 316 YNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMC 375

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + ++ TYS+++H LC   RL  A  L 
Sbjct: 376 RKELIPNTVTYSTLMHGLCHVGRLQDAIALF 406



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 155/316 (49%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T  A+R+ R +++    P++V Y  +I  LCK  +
Sbjct: 164 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 223

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+   G +P+  TY +++       ++K    +L+ M       +   + T
Sbjct: 224 VTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFST 283

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G++ EA D ++ M+  GV+ ++V+YN L++ +C   +++ A  + D M  +G
Sbjct: 284 VVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 343

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D  +++ LI+G CK   I+ A    E M +     N   Y+ ++  L   G++  AI
Sbjct: 344 FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAI 403

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M    ++ D  +Y  ++  LCK +RL  A  LL +   S +         V+DG+
Sbjct: 404 ALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGM 463

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A+ + S +
Sbjct: 464 CRAGELEAARDLFSNL 479



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 147/314 (46%), Gaps = 4/314 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P    +  +++ LCK+R    A  +F  +   G  P + TYN LI  LC     + 
Sbjct: 202 GNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKH 261

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              +L E+ +S   PN + ++T++    +  K     +++  M ++G   +   Y  ++ 
Sbjct: 262 VTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 321

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
                  + EA    + MV  G   D+VSY+TLIN YCK  ++E A  L +EM ++    
Sbjct: 322 GHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIP 381

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T++ L+ GLC  G ++ A      M   G   +  +Y  ++D L K+ ++D AI + 
Sbjct: 382 NTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALL 441

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           +++E      D   Y+ ++  +C+A  L +A  L  +    G+         +++GL   
Sbjct: 442 KAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQ 501

Query: 300 GCRREAKKIQSKIR 313
           G   EA K+  +++
Sbjct: 502 GLLAEASKLFGEMK 515



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 39/315 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N +++G C     D A+++F  +   GF P++V+Y+ LI G CK  R
Sbjct: 304 MIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQR 363

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A ++ +E+      PN +TY+T+M                             G C 
Sbjct: 364 IEKAMYLFEEMCRKELIPNTVTYSTLMH----------------------------GLC- 394

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                  +GRL++A     +MVT G   D VSY  L++  CK  +L+ A  LL  +E   
Sbjct: 395 ------HVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 448

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   +TI+IDG+C+AG ++ AR     ++  G   N+  Y  +++ L + G +  A 
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 508

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+ K    +  TY+ +     +        +LL   L  G     S    +V+ L
Sbjct: 509 KLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEML 568

Query: 297 RHSGCRREAKKIQSK 311
              G  +  K+I S+
Sbjct: 569 SDDGLDQSVKQILSE 583



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 143/304 (47%), Gaps = 4/304 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T NI++N  C  +    A  +   + K G  P + T+N LI+GLC  G++    
Sbjct: 99  IPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVL 158

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TY T++    +       + +L +M++     D   Y ++I + 
Sbjct: 159 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 218

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ +A +   +M+  G+   I +YN+LI+  C   + +    LL+EM       + 
Sbjct: 219 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 278

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              + ++D LCK G +  A   ++ M K G + N+  YN ++D      ++D A+ VF++
Sbjct: 279 VIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 338

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D  +YS++++  CK +R+  A  L     +  +         ++ GL H G 
Sbjct: 339 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 398

Query: 302 RREA 305
            ++A
Sbjct: 399 LQDA 402



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 119/292 (40%), Gaps = 39/292 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  A F  +L  + K ++    L +   +   G  P + T NILI   C   RL  A  +
Sbjct: 66  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 125

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH PN  T+ T+++                            G C        
Sbjct: 126 LAKILKLGHQPNIATFNTLIR----------------------------GLCVE------ 151

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ E     ++M+ +G Q ++V+Y TLIN  CK G   AA  LL  ME+   + D   
Sbjct: 152 -GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVV 210

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +ID LCK   +  A      M   G   ++  YN ++  L    +  H   +   M 
Sbjct: 211 YTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMV 270

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
               + +   +S++V  LCK  ++  A  ++   +K GV        A++DG
Sbjct: 271 NSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 322



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 5/238 (2%)

Query: 76  HAPNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           H P +I  +T ++    + + Y   L +   M   G   + +    +I +F  + RL  A
Sbjct: 63  HPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFA 122

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              + +++  G Q +I ++NTLI   C EGK+     L D+M  +GF+ +  T+  LI+G
Sbjct: 123 FSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLING 182

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDS 251
           LCK G+   A   L  M +     ++  Y  I+D L KD ++  A N+F  M    +  S
Sbjct: 183 LCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPS 242

Query: 252 -FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            FTY+S++H LC        + LL   + S +         VVD L   G   EA  +
Sbjct: 243 IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDV 300


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 XLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M+  G+  D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 197 MQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM  +G   +  T T LI
Sbjct: 189 EGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLX 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 119/248 (47%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A    ++M+  G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M   G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLNVGLK 378



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ P+ +T
Sbjct: 407 MQRDGYMPSVVT 418


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 146/288 (50%), Gaps = 4/288 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN M++G+C+    D A  + R + + G  P++ TY  LI+GLC+ GR+  AR + +++
Sbjct: 277 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 336

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PNA+ +T ++    +    +  LE+   M+ +G   D   Y  ++    +   L
Sbjct: 337 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 396

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           K A+  + +M + G++ D V+Y TLI+ YCKE +L+ A  +   M  +G   D+ T+T L
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 456

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           I GL KAG    A   L  M + G + +   Y  ++D   + G +   + + + M+ K  
Sbjct: 457 ISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGR 516

Query: 252 ----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
                TY+ +++  CK  ++ +A  LL + +  GV         ++DG
Sbjct: 517 KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDG 564



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 141/267 (52%), Gaps = 4/267 (1%)

Query: 2   ICG-DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +CG  + P    F I+++  CK    +  L + R +++ G  P+ VTYN ++ GLC+A  
Sbjct: 336 MCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARD 395

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L++A  I+ E+  +G  P+ +TYTT++    +  +  + +EI   M  +G   D   Y  
Sbjct: 396 LKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTA 455

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   K GR  +A   + +M+  G++ D  +Y  +I+ +C++G ++    LL EM+ +G
Sbjct: 456 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 515

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ ++++G CK G +K A + L  M  IG   +   YN ++D   K GK+   I
Sbjct: 516 RKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTD-I 574

Query: 241 NVFESME--VKDSFTYSSMVHNLCKAK 265
              +S +  V D   Y+S+V  + K K
Sbjct: 575 EELKSAKGTVPDLGVYTSIVGEIVKKK 601



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G  PE   +N+L++ L + G L +A+ +  E+   G     +++ T++    R       
Sbjct: 235 GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGA 294

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             +   M   G T D + Y  +I    ++GR+++A    E+M   G++ + V +  LI+ 
Sbjct: 295 ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDA 354

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK+G  E    L  EM ++G   D  T+  +++GLC+A ++K A   +  M   G   +
Sbjct: 355 HCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPD 414

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+ ++D A+ + ++M  +    D  TY++++  L KA R   A ++L 
Sbjct: 415 TVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG 474

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
             +++G+    +    V+D      CR+    +++ +R+ K
Sbjct: 475 EMMEAGLEPDNTTYTMVIDAF----CRK--GDVKTGLRLLK 509



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 6/244 (2%)

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +L D+G  P A  +  +M+   R  +      +   M+ +G       + T+I+   + G
Sbjct: 230 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 289

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L  A     +M   GV  D+ +Y  LI   C+ G++E A  + ++M  +G + +    T
Sbjct: 290 DLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFT 349

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           ILID  CK G+ +    LH E M + G   +   YN IV+ L +   +  A  +   M  
Sbjct: 350 ILIDAHCKKGDAETMLELHRE-MRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS 408

Query: 249 ----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                D+ TY++++   CK + L  A ++  + +  GV + +    A++ GL  +G   +
Sbjct: 409 AGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSAD 468

Query: 305 AKKI 308
           A+++
Sbjct: 469 AERV 472



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 43/227 (18%)

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA  +  Q++  G+  +   +N L+    + G+L +A  + DEM+ +G      +   +
Sbjct: 222 PEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTM 281

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----- 246
           I G+C+AG++ GA      M++ G   ++  Y  ++  L + G+I+ A  VFE M     
Sbjct: 282 ISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGM 341

Query: 247 ----------------------------EVK------DSFTYSSMVHNLCKAKRLPSASK 272
                                       E++      D+ TY+++V+ LC+A+ L SAS 
Sbjct: 342 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 401

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
           +++    +G+R        ++DG     C+ E   +  +I+   ++ 
Sbjct: 402 IVVEMRSAGLRPDTVTYTTLIDGY----CKEEELDMAMEIKQNMVAE 444



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 3/127 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+ ++++  C+       LR+ + +Q  G  P +VTYN+++ G CK G+
Sbjct: 476 MMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 535

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +L  + + G +P+ ITY  ++    ++ K     E+ SA   KG   D   Y +
Sbjct: 536 MKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSA---KGTVPDLGVYTS 592

Query: 121 VIAAFVK 127
           ++   VK
Sbjct: 593 IVGEIVK 599


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 122/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 115/216 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYMPSVVT 418


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 122/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     + + ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M      ++L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYMPSVVT 418


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 159/305 (52%), Gaps = 9/305 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN +L+ LCK++  + A  + + L    F P+ VTYNIL  G C   R   A  +LKE+
Sbjct: 176 SFNTLLDILCKSKRVETAHSLLKTLTSR-FRPDTVTYNILANGYCLIKRTPMALRVLKEM 234

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P  +TY T++K  FR+ + K   E    MK++    D   Y TVI  F   G +
Sbjct: 235 VQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDV 294

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTI 190
           K+A     +MV +GV  ++ +YN LI + CK+  +E A ++ +EM ++G    +  T+ +
Sbjct: 295 KKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNV 354

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +I GLC  G+++ A   +E M + G  + ++ YN ++      G+++ A+ VF  M    
Sbjct: 355 VIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGS 414

Query: 248 -VKDSFTYSSMVHNLC---KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            + +  TY+ ++  +    K++ L  A KLL+  +  G    K     V++GL  +G + 
Sbjct: 415 CLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLVITGNQD 474

Query: 304 EAKKI 308
            AK+I
Sbjct: 475 FAKEI 479



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 1/196 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ML G  ++     A   +  ++K     ++VTY  +I G   AG 
Sbjct: 234 MVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGD 293

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYC 119
           ++ A+ +  E+   G  PN  TY  +++   +    +  + +   M R+G        Y 
Sbjct: 294 VKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYN 353

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            VI     +G ++ A  +ME+M   G++  + +YN +I  +C  G++E A  +  +M   
Sbjct: 354 VVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDG 413

Query: 180 GFECDKYTHTILIDGL 195
               +  T+ +LI  +
Sbjct: 414 SCLPNLDTYNVLISAM 429



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 109/283 (38%), Gaps = 76/283 (26%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK---------- 57
           P T T+NI+ NG C  + T  ALR+ + + + G  P +VTYN ++KG  +          
Sbjct: 206 PDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEF 265

Query: 58  -------------------------AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                                    AG ++ A+ +  E+   G  PN  TY  +++   +
Sbjct: 266 YLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCK 325

Query: 93  NRKYKLGLEILSAMKRKGYTFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
               +  + +   M R+G        Y  VI     +G ++ A  +ME+M   G++  + 
Sbjct: 326 KDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQ 385

Query: 152 SYNTLINLYCKEGKLEAAY---------------------------------------LL 172
           +YN +I  +C  G++E A                                        LL
Sbjct: 386 TYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLL 445

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +D M  +GF   K+T   +++GL   GN   A+  L   ++ G
Sbjct: 446 MD-MVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSRCG 487



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   T+N+++ GLC     + AL     + +HG    + TYN++I+  C AG +  
Sbjct: 343 GVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEK 402

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK---LGLEILSAMKRKGYTFDGFGYCT 120
           A  +  ++GD    PN  TY  ++   F  +K +   +  ++L  M  +G+    F +  
Sbjct: 403 ALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNR 462

Query: 121 VIAAFVKIG 129
           V+   V  G
Sbjct: 463 VLNGLVITG 471



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 3/157 (1%)

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           S++  +++  +     +A+ L+  M          T  IL +     G    A      M
Sbjct: 106 SFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTFLSM 165

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLP 268
            + G   +L ++N ++D L K  +++ A ++ +++  +   D+ TY+ + +  C  KR P
Sbjct: 166 AEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTP 225

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            A ++L   ++ G+         ++ G   S   +EA
Sbjct: 226 MALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEA 262


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 138/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ATFN ++ GLC        L +F  +   GF P +VTY  LI GLCK G    A  +
Sbjct: 127 PNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRL 186

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      P+ + YT+I+    ++R+      + S M  +G +   F Y ++I A   
Sbjct: 187 LRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCN 246

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  + +MV   +  ++V ++T+++  CKEGK+  A+ ++D M K+G E +  T
Sbjct: 247 LCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVT 306

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +  L+DG C    +  A    + M   GF  ++ +Y+ +++   K  +I+ A+ +FE M 
Sbjct: 307 YNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMC 366

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + ++ TYS+++H LC   RL  A  L 
Sbjct: 367 RKELIPNTVTYSTLMHGLCHVGRLQDAIALF 397



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 155/316 (49%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T  A+R+ R +++    P++V Y  +I  LCK  +
Sbjct: 155 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 214

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+   G +P+  TY +++       ++K    +L+ M       +   + T
Sbjct: 215 VTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFST 274

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G++ EA D ++ M+  GV+ ++V+YN L++ +C   +++ A  + D M  +G
Sbjct: 275 VVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 334

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D  +++ LI+G CK   I+ A    E M +     N   Y+ ++  L   G++  AI
Sbjct: 335 FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAI 394

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M    ++ D  +Y  ++  LCK +RL  A  LL +   S +         V+DG+
Sbjct: 395 ALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGM 454

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A+ + S +
Sbjct: 455 CRAGELEAARDLFSNL 470



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 147/314 (46%), Gaps = 4/314 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P    +  +++ LCK+R    A  +F  +   G  P + TYN LI  LC     + 
Sbjct: 193 GNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKH 252

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              +L E+ +S   PN + ++T++    +  K     +++  M ++G   +   Y  ++ 
Sbjct: 253 VTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 312

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
                  + EA    + MV  G   D+VSY+TLIN YCK  ++E A  L +EM ++    
Sbjct: 313 GHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIP 372

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T++ L+ GLC  G ++ A      M   G   +  +Y  ++D L K+ ++D AI + 
Sbjct: 373 NTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALL 432

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           +++E      D   Y+ ++  +C+A  L +A  L  +    G+         +++GL   
Sbjct: 433 KAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQ 492

Query: 300 GCRREAKKIQSKIR 313
           G   EA K+  +++
Sbjct: 493 GLLAEASKLFGEMK 506



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 39/315 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N +++G C     D A+++F  +   GF P++V+Y+ LI G CK  R
Sbjct: 295 MIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQR 354

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A ++ +E+      PN +TY+T+M                             G C 
Sbjct: 355 IEKAMYLFEEMCRKELIPNTVTYSTLMH----------------------------GLC- 385

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                  +GRL++A     +MVT G   D VSY  L++  CK  +L+ A  LL  +E   
Sbjct: 386 ------HVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 439

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   +TI+IDG+C+AG ++ AR     ++  G   N+  Y  +++ L + G +  A 
Sbjct: 440 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 499

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+ K    +  TY+ +     +        +LL   L  G     S    +V+ L
Sbjct: 500 KLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEML 559

Query: 297 RHSGCRREAKKIQSK 311
              G  +  K+I S+
Sbjct: 560 SDDGLDQSVKQILSE 574



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 143/304 (47%), Gaps = 4/304 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T NI++N  C  +    A  +   + K G  P + T+N LI+GLC  G++    
Sbjct: 90  IPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVL 149

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TY T++    +       + +L +M++     D   Y ++I + 
Sbjct: 150 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 209

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ +A +   +M+  G+   I +YN+LI+  C   + +    LL+EM       + 
Sbjct: 210 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 269

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              + ++D LCK G +  A   ++ M K G + N+  YN ++D      ++D A+ VF++
Sbjct: 270 VIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 329

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D  +YS++++  CK +R+  A  L     +  +         ++ GL H G 
Sbjct: 330 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 389

Query: 302 RREA 305
            ++A
Sbjct: 390 LQDA 393



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 119/292 (40%), Gaps = 39/292 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  A F  +L  + K ++    L +   +   G  P + T NILI   C   RL  A  +
Sbjct: 57  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 116

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH PN  T+ T+++                            G C        
Sbjct: 117 LAKILKLGHQPNIATFNTLIR----------------------------GLCVE------ 142

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ E     ++M+ +G Q ++V+Y TLIN  CK G   AA  LL  ME+   + D   
Sbjct: 143 -GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVV 201

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +ID LCK   +  A      M   G   ++  YN ++  L    +  H   +   M 
Sbjct: 202 YTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMV 261

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
               + +   +S++V  LCK  ++  A  ++   +K GV        A++DG
Sbjct: 262 NSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 313



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 5/238 (2%)

Query: 76  HAPNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           H P +I  +T ++    + + Y   L +   M   G   + +    +I +F  + RL  A
Sbjct: 54  HPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFA 113

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              + +++  G Q +I ++NTLI   C EGK+     L D+M  +GF+ +  T+  LI+G
Sbjct: 114 FSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLING 173

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDS 251
           LCK G+   A   L  M +     ++  Y  I+D L KD ++  A N+F  M    +  S
Sbjct: 174 LCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPS 233

Query: 252 -FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            FTY+S++H LC        + LL   + S +         VVD L   G   EA  +
Sbjct: 234 IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDV 291


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 148/309 (47%), Gaps = 4/309 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NIM++ +CK    + A  +F  ++  G VP+ VTYN +I G  K GR
Sbjct: 121 MIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGR 180

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L       +E+ D    P+ ITY  ++ C  +  K  +GLE    MK  G   +   Y T
Sbjct: 181 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 240

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K G +++A  +   M   G+  +  +Y +LI+  CK G L  A+ L +EM + G
Sbjct: 241 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 300

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+T LIDGLC A  +K A      M+  G   NL +YN ++    K   +D A+
Sbjct: 301 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 360

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ++ +    D   Y + +  LC  +++ +A  ++    + G++        ++D  
Sbjct: 361 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 420

Query: 297 RHSGCRREA 305
             SG   E 
Sbjct: 421 FKSGNPTEG 429



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 123/247 (49%), Gaps = 1/247 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P  A++N +++G  K +  D AL +   L+  G  P+L+ Y   I GLC   +
Sbjct: 331 MDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEK 390

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ ++ E+ + G   N++ YTT+M   F++     GL +L  MK          +C 
Sbjct: 391 IEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCV 450

Query: 121 VIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I    K   + +A DY  ++  D G+Q +   +  +I+  CK+ ++EAA  L ++M ++
Sbjct: 451 LIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 510

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D+  +T L+DG  K GN+  A    + M +IG   +L AY  +V  L    ++  A
Sbjct: 511 GLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 570

Query: 240 INVFESM 246
            +  E M
Sbjct: 571 RSFLEEM 577



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 152/317 (47%), Gaps = 7/317 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +++ +++  CK      A++ +  +++ G VP   TY  LI   CK G L  A 
Sbjct: 231 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAF 290

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G   N +TYT ++       + K   E+   M   G   +   Y  +I  F
Sbjct: 291 RLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGF 350

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK   +  A + + ++   G++ D++ Y T I   C   K+EAA ++++EM++ G + + 
Sbjct: 351 VKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANS 410

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T L+D   K+GN       L+ M ++  +  +  +  ++D L K+  +  A++ F  
Sbjct: 411 LIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 470

Query: 246 ME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +        ++  +++M+  LCK  ++ +A+ L    ++ G+   ++A  +++DG    G
Sbjct: 471 ISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQG 530

Query: 301 CRREAKKIQSKIRMAKI 317
              EA  ++ K  MA+I
Sbjct: 531 NVLEALALRDK--MAEI 545



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 135/293 (46%), Gaps = 39/293 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T + N +L+   K   TD+  R F+ +   G  P + TYNI+I  +CK G +  AR +
Sbjct: 93  PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGL 152

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  P+ +TY +++                          DGFG         K
Sbjct: 153 FEEMKFRGLVPDTVTYNSMI--------------------------DGFG---------K 177

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GRL +   + E+M     + D+++YN LIN +CK GKL        EM+  G + +  +
Sbjct: 178 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 237

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV-FESM 246
           ++ L+D  CK G ++ A      M ++G   N   Y  ++D   K G +  A  +  E +
Sbjct: 238 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 297

Query: 247 EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +V    +  TY++++  LC A+R+  A +L      +GV    ++  A++ G 
Sbjct: 298 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGF 350



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 129/315 (40%), Gaps = 39/315 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ + + L      + A++ F  +++    P+  + N L+    K G+    + 
Sbjct: 57  VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR 116

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             K++  +G  P   TY  ++ C                                     
Sbjct: 117 FFKDMIGAGARPTVFTYNIMIDC-----------------------------------MC 141

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G ++ A    E+M   G+  D V+YN++I+ + K G+L+      +EM+    E D  
Sbjct: 142 KEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI 201

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LI+  CK G +         M   G   N+ +Y+ +VD   K+G +  AI  +  M
Sbjct: 202 TYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 261

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                V + +TY+S++   CK   L  A +L    L+ GV        A++DGL  +   
Sbjct: 262 RRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERM 321

Query: 303 REAKKIQSKIRMAKI 317
           +EA+++  K+  A +
Sbjct: 322 KEAEELFGKMDTAGV 336



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           D+     TF ++++GLCKN+    A+  F R     G       +  +I GLCK  ++  
Sbjct: 440 DIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEA 499

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + +++   G  P+   YT++M   F+       L +   M   G   D   Y +++ 
Sbjct: 500 ATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVW 559

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIV 151
                 +L++A  ++E+M+ +G+  D V
Sbjct: 560 GLSHCNQLQKARSFLEEMIGEGIHPDEV 587


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 151/317 (47%), Gaps = 9/317 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+   L P   T   ++NGLCK  +T+ A R+F  L K   + P + TY ++I G CK G
Sbjct: 281 MVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEG 340

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +L  + + G APN  TYTT++    +   +    E+++ M+R+G+  + + Y 
Sbjct: 341 KLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYN 400

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    K G+++EA   +      G+QLD V+Y  +I  +CK+G +  A  L + M + 
Sbjct: 401 ALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAEN 460

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D +T+T LI   C+   ++ ++   +    I      + Y  ++    K GK   A
Sbjct: 461 GCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSA 520

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VFE M       DS TY +++  LCK  RL  A  L    L    R++      V   
Sbjct: 521 LRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDK--RLVPCEVTPVTLA 578

Query: 296 LRHSGCRREAKKIQSKI 312
             +  CRRE   +   I
Sbjct: 579 FEY--CRREKAVVAVSI 593



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 5/294 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTARW 66
           P    +   ++GLCK  Y   A  +   +   G  P + T+  LI GLCK G   R  R 
Sbjct: 253 PNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRL 312

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            LK +  S + PN  TYT ++    +  K      +L  M  +G   +   Y T+I+   
Sbjct: 313 FLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHC 372

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G    A + M +M  +G Q +I +YN LI+  CK+GK++ AY +L     QG + DK 
Sbjct: 373 KEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKV 432

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE-- 244
           T+T++I   CK G+I  A      M + G   ++  Y  ++ R  +  +++ +  +F+  
Sbjct: 433 TYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKC 492

Query: 245 -SME-VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ++E V    TY+SM+   CK  +  SA ++    +++G +       A++ GL
Sbjct: 493 LAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGL 546



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 40/332 (12%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L P   +F  ++ G C++   +    +   +Q  GF  +  T  ++++  C+ GR R 
Sbjct: 179 GGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRD 238

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG------------- 110
              + + + + G  PN + YT  +    +    K    +L  M  KG             
Sbjct: 239 VSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLIN 298

Query: 111 -----------------------YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
                                  Y  +   Y  +I  + K G+L  A   + +MV  G+ 
Sbjct: 299 GLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLA 358

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            +  +Y TLI+ +CKEG    A+ L+++M ++GF+ + YT+  LIDGLCK G I+ A   
Sbjct: 359 PNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKV 418

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCK 263
           L   N  G   +   Y  ++    K G I +A+++F  M       D  TY++++   C+
Sbjct: 419 LRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQ 478

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +++  + KL   CL   +   K    +++ G
Sbjct: 479 QRQMEESQKLFDKCLAIELVPTKQTYTSMIAG 510



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 27/308 (8%)

Query: 31  RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH-------------- 76
           RM     + G +PE       ++       + TA W+L+   D+G               
Sbjct: 119 RMVAAFAEAGRLPEAADMVFEMRSHGLPFCVETANWVLRAGLDTGSFAYARKVFDGMVTR 178

Query: 77  ---APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA-AFVKIGRLK 132
               P+A ++  ++  C R+ + +    +L+ M+ +G+  D    CTVI   F + GR +
Sbjct: 179 GGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDN-ATCTVIVRVFCQKGRFR 237

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           + ++   +M+  G   ++V+Y   I+  CK   ++ A+ +L+EM  +G + + YTHT LI
Sbjct: 238 DVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLI 297

Query: 193 DGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----NVFESME 247
           +GLCK G  + A RL L+ +    +  N+  Y  ++    K+GK+  A      + E   
Sbjct: 298 NGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGL 357

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             ++ TY++++   CK      A +L+    + G +       A++DGL   G  +EA K
Sbjct: 358 APNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYK 417

Query: 308 IQSKIRMA 315
           +   +RMA
Sbjct: 418 V---LRMA 422



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 138/306 (45%), Gaps = 45/306 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+  +++G CK    + A  +   +++ GF P + TYN LI GLCK G+
Sbjct: 352 MVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGK 411

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-------YT- 112
           ++ A  +L+   + G   + +TYT ++    +       L++ + M   G       YT 
Sbjct: 412 IQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTT 471

Query: 113 -----------------FDG----------FGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                            FD             Y ++IA + K+G+   A    E+MV +G
Sbjct: 472 LIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNG 531

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKYTHTILIDGLCKAGNIKGA 204
            Q D ++Y  LI+  CKE +LE A  L + M +K+   C+    T+  +  C+    + A
Sbjct: 532 CQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLAFE-YCRR---EKA 587

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI-DHAINVFESMEVK---DSFTYSSMVHN 260
            + +  ++++         N +V +L   G + D ++ + ++++V    D   Y+S + N
Sbjct: 588 VVAVSILDRLDKRRKNHTVNVLVRKLSAIGHVEDASLFLKKALDVDLAVDRLAYTSFI-N 646

Query: 261 LCKAKR 266
            C A +
Sbjct: 647 SCYANK 652


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 VLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M+  G+  D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 197 MQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 138/300 (46%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A +L DEM  +G   +  T T LI
Sbjct: 189 EGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLX 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 119/248 (47%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A    ++M+  G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M   G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLNVGLK 378



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ P+ +T
Sbjct: 407 MQRDGYMPSVVT 418


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 122/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 115/216 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYMPSVVT 418


>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
 gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 624

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 22  KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81
           K R  D  L +FR +   G    + +  I+++GLC+ G +  ++ ++KE    G  P A 
Sbjct: 201 KRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAY 260

Query: 82  TYTTIMKCCFRNRKYKLGLE-ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
           TY TI+    + R +  G+E +L  MK+ G  ++   Y  ++   VK G++ +A    ++
Sbjct: 261 TYNTIINAYVKQRDFS-GVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDE 319

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           M   G++ D+  Y +LI+  C++G ++ A+LL DE+ ++G     YT+  LIDG+CK G 
Sbjct: 320 MRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGE 379

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSS 256
           +  A + +  M   G +     +N ++D   + G +D A  +++ ME K    D FT ++
Sbjct: 380 MGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNT 439

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +     + KR   A + L   ++ GV++   +   ++D     G   EAK++
Sbjct: 440 IASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRL 491



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 4/260 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P + T+  +++G+CK      A  +   +Q  G     V +N LI G C+ G +  A 
Sbjct: 360 LSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEAS 419

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   +   G   +  T  TI  C  R ++Y    + L  M   G       Y  +I  +
Sbjct: 420 MIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVY 479

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G ++EA     +M + GVQ + ++YN +I  YCK+GK++ A  L   ME  G + D 
Sbjct: 480 CKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDS 539

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+T LI G C A N+  A      M   G D N   Y  ++  L K GK D A  +++ 
Sbjct: 540 YTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDE 599

Query: 246 MEVK----DSFTYSSMVHNL 261
           M+ K    D+  Y++++ ++
Sbjct: 600 MKRKGYTIDNKVYTALIGSM 619



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 147/339 (43%), Gaps = 39/339 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++N   K R       + + ++K G V   VTY +L++   K G++  A 
Sbjct: 255 IKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAE 314

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G   +   YT+++    R    K    +   +  KG +   + Y  +I   
Sbjct: 315 KLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGV 374

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +  A   M +M + GV +  V +NTLI+ YC++G ++ A ++ D ME++GF+ D 
Sbjct: 375 CKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADV 434

Query: 186 YT-----------------------------------HTILIDGLCKAGNIKGARLHLEY 210
           +T                                   +T LID  CK GN++ A+     
Sbjct: 435 FTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVE 494

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M+  G   N   YN ++    K GKI  A  +  +ME      DS+TY+S++H  C A  
Sbjct: 495 MSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADN 554

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           +  A +L       G+         ++ GL  +G   EA
Sbjct: 555 VDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEA 593



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G +   T ++  +++  CK    + A R+F  +   G  P  +TYN++I   CK G+
Sbjct: 460 MMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGK 519

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM--KCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           ++ AR +   +  +G  P++ TYT+++  +C   N      + + S M  KG   +   Y
Sbjct: 520 IKEARKLRANMEANGMDPDSYTYTSLIHGECIADN--VDEAMRLFSEMGLKGLDQNSVTY 577

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             +I+   K G+  EA    ++M   G  +D   Y  LI
Sbjct: 578 TVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALI 616


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 151/309 (48%), Gaps = 4/309 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +      +N +++GLCK ++ D+A  +F  ++  G  P++ TYN LI  LC  GR   
Sbjct: 249 GKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSD 308

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  + +    PN +T++ ++    +  K     ++   M ++    D F Y ++I 
Sbjct: 309 ASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA    E M++     ++V+YNTLI  +CK  ++E    L  EM ++G   
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+  LI GL +AG+   A+   + M   G   ++  Y+ ++D L K GK++ A+ VF
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++      D +TY+ M+  +CKA ++     L  S    GV+        ++ G    
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548

Query: 300 GCRREAKKI 308
           G + EA  +
Sbjct: 549 GLKEEADAL 557



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 137/267 (51%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++NI++N  C+      AL +   + K G+ P++VT + L+ G C + R+  A  ++ ++
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 176

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+ +T+ T++   F + K    + ++  M ++G   D   Y  V+    K G +
Sbjct: 177 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDI 236

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A   +++M    ++ D+V YNT+I+  CK   ++ A+ L ++ME +G   D +T+  L
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSL 296

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + N+  ++ ++D   K+GK+  A  +++ M  +  
Sbjct: 297 ISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D FTYSS+++  C   RL  A  + 
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMF 383



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TFN +++GL  +     A+ +   + + G  P+LVTY  ++ GLCK G +  A  +
Sbjct: 183 PDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSL 242

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++       + + Y TI+    + +       + + M+ KG   D F Y ++I+    
Sbjct: 243 LKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCN 302

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V+++ LI+ + KEGKL  A  L DEM K+  + D +T
Sbjct: 303 YGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 362

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI+G C    +  A+   E M       N+  YN ++    K  +++  + +F  M 
Sbjct: 363 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               V ++ TY++++  L +A     A K+    +  GV         ++DGL
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 133/265 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ +++   K      A +++  + K    P++ TY+ LI G C   R
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      PN +TY T++K   + ++ + G+E+   M ++G   +   Y T
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G    A    ++MV+DGV  DI++Y+ L++  CK GKLE A ++ + ++K  
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 495

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D YT+ I+I+G+CKAG ++        ++  G   N+  Y  ++    + G  + A 
Sbjct: 496 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 555

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAK 265
            +F  M+   +   S   + L +A+
Sbjct: 556 ALFREMKEDGTLPDSGCYNTLIRAR 580



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 145/309 (46%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + +LNG C ++   +A+ +   + + G+ P+ VT+N LI GL    +   A  +
Sbjct: 148 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVAL 207

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  P+ +TY  ++    +     L L +L  M++     D   Y T+I    K
Sbjct: 208 VDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCK 267

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A     +M T G++ D+ +YN+LI+  C  G+   A  LL  M ++    +  T
Sbjct: 268 YKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVT 327

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + LID   K G +  A    + M K   D ++  Y+ +++      ++D A ++FE M 
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 387

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            KD F    TY++++   CKAKR+    +L     + G+         ++ GL  +G   
Sbjct: 388 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 447

Query: 304 EAKKIQSKI 312
            A+KI  K+
Sbjct: 448 MAQKIFKKM 456



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 136/309 (44%), Gaps = 39/309 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +L+ + K +  D  + +   +Q      +L +YNILI   C+  +L  A  +
Sbjct: 78  PSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+ +T ++++     +++    + ++  M   GY  D   + T+I     
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFL 197

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +  EA   ++QMV  G Q D+V+Y  ++N  CK G ++ A  LL +MEK   E D   
Sbjct: 198 HNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +IDGLCK  +I                                   D A  +F  ME
Sbjct: 258 YNTIIDGLCKYKHI-----------------------------------DDAFALFNKME 282

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D FTY+S++  LC   R   AS+LL + ++  +        A++D     G   
Sbjct: 283 TKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLV 342

Query: 304 EAKKIQSKI 312
           EA+K+  ++
Sbjct: 343 EAEKLYDEM 351



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T++ ++NG C +   D A  MF  +      P +VTYN LIKG CKA R
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +E+   G   N +TY T+++  F+     +  +I   M   G   D   Y  
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+L++A    E +    ++ DI +YN +I   CK GK+E  + L   +  +G
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +   +T +I G C+ G  + A      M + G   +   YN ++    +DG    + 
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 590

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
            + + M     V D+ T  SMV N+    RL  +   +LS
Sbjct: 591 ELIKEMRSCGFVGDASTI-SMVINMLHDGRLEKSYLEMLS 629


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P  A  + +++GL K     +A  +   ++K G  P L  YN LI  +CK G+
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +   +G  G  PN +TY+ ++    +  K  + L  L  M   G     + Y +
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   K+G+L+ A    ++M+ +G++ ++V Y +LI+ YCKEG+L  A+ L  EM  +G
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + YT T LI GLC A  +  A      M +     N   YN +++   K+G    A 
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + + M     V D++TY  ++  LC   R+  A + +
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 3/285 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   T+N+++ G CK   T  A  +   + + G VP+  TY  LI GLC  GR
Sbjct: 521 MVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGR 580

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR  + +L       N + ++ ++    +  +    L+    M  +G   D   Y  
Sbjct: 581 VSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSV 640

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I   ++    +   D ++QM   G++ D V Y T+I+   K G L+ A+ L D M  +G
Sbjct: 641 LIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEG 700

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T LI+GLCK G +  A L    M       N   Y C +D L  +G I+ AI
Sbjct: 701 CLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAI 760

Query: 241 NVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + +    + ++ TY+ ++   CK  R+  A+++L++ + SG+
Sbjct: 761 QLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGI 805



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 143/313 (45%), Gaps = 4/313 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P    +  +++G CK     NA R++  +   G  P   T+  LI GLC A R
Sbjct: 451 MIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR 510

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ +    PN +TY  +++   +        E+L  M  KG   D + Y  
Sbjct: 511 MAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRP 570

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+     GR+ EA ++M  +  +  +L+ + ++ L++ YCKEG+L+ A     EM  +G
Sbjct: 571 LISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRG 630

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D   +++LI G+ +  + +     L+ M+  G   +   Y  ++D   K G +  A 
Sbjct: 631 VAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAF 690

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +++ M     + +  TY+++++ LCK   +  A  L    L S     ++     +D L
Sbjct: 691 GLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYL 750

Query: 297 RHSGCRREAKKIQ 309
              G   +A ++ 
Sbjct: 751 TSEGNIEKAIQLH 763



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 40/347 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M CG L P   T + +LNGL + R    AL +F  +   G  P++  Y  +++ LC+   
Sbjct: 172 MDCGIL-PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR ++  +  SG   +  TY   ++   +N++    +EI + +  KG   D   YCT
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 121 VIAAFVKIGRLKEATDYMEQMV--------------TDGVQ--------LDIVS------ 152
           ++    K+   +   + M +M+               DG++         D+V+      
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFG 350

Query: 153 -------YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                  YN LIN  CK+GKL+ A  L + M  +G   +  T++ILID  CK G +  A 
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
             L  M ++G  + +  Y+ ++    K GK+  A ++F+ M       +   Y+S++   
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           CK   L +A +L       G+        A++ GL H+    EA K+
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKL 517



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 144/303 (47%), Gaps = 4/303 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  F++++    +NR   + L + R +   G +P++ T + ++ GL +  + R A  +  
Sbjct: 145 TLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFD 204

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  SG  P+   YT +++     + +    E++  M+  G       Y   I    K  
Sbjct: 205 EIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQ 264

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+ EA +    +   G++ D+ +Y TL+   CK  + EA   +++EM + GF   +   +
Sbjct: 265 RVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVS 324

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            L+DGL K GNI  A   +  + K G   +L  YN +++ + KDGK+D A ++F +M  K
Sbjct: 325 NLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHK 384

Query: 250 DSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             F    TYS ++ + CK  +L  A   L    + G++       +++ G    G  R A
Sbjct: 385 GLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAA 444

Query: 306 KKI 308
           K +
Sbjct: 445 KSL 447



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 143/309 (46%), Gaps = 6/309 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+  ++ GLCK    +    M   + + GFVP     + L+ GL K G + +A  ++ 
Sbjct: 285 VGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVN 344

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G AP+   Y  ++    ++ K      + + M  KG   +   Y  +I +F K G
Sbjct: 345 KVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRG 404

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L  A  ++ +M   G++  +  Y++LI+ +CK GKL AA  L DEM   G + +   +T
Sbjct: 405 KLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYT 464

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-- 246
            LI G CK G +  A RL+ E   K G   N   +  ++  L    ++  A  +F  M  
Sbjct: 465 SLISGYCKEGELHNAFRLYHEMTGK-GISPNTYTFTALISGLCHANRMAEANKLFGEMVE 523

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
              + +  TY+ ++   CK      A +LL   ++ G+       + ++ GL  +G   E
Sbjct: 524 WNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSE 583

Query: 305 AKKIQSKIR 313
           A++  + ++
Sbjct: 584 AREFMNDLQ 592



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  M++   K      A  ++  +   G +P +VTY  LI GLCK G +  A 
Sbjct: 666 LRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAE 725

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF-----GYCT 120
            + +E+  S   PN  TY      CF +     G  I  A++      +GF      Y  
Sbjct: 726 LLCREMLASNSLPNQNTYA-----CFLDYLTSEG-NIEKAIQLHDVLLEGFLANTVTYNI 779

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+GR++EA + +  M+  G+  D +SY+T+I  YC+ G L+ A  L + M  +G
Sbjct: 780 LIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRG 839

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
              D   +  LI G C  G +  A    + M + G   N   YN ++
Sbjct: 840 VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 886



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 1/196 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGLCK    D A  + R +     +P   TY   +  L   G 
Sbjct: 696 MVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGN 755

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L ++   G   N +TY  +++   +  + +   E+L  M   G + D   Y T
Sbjct: 756 IEKAIQ-LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYST 814

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + + G LKEA    E M+  GV  D V+YN LI   C  G+L  A+ L D+M ++G
Sbjct: 815 IIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRG 874

Query: 181 FECDKYTHTILIDGLC 196
            + ++ T+  LI G C
Sbjct: 875 VKPNRATYNSLIHGTC 890



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 38/297 (12%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ +L+G CK    D+AL   R +   G   +LV Y++LI G+ +    R+   +LK++ 
Sbjct: 603 FSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMH 662

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G  P+ + YTT++    +    K+   +   M  +G   +   Y  +I    KIG + 
Sbjct: 663 DQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMD 722

Query: 133 EAT----------------------DYM--EQMVTDGVQL----------DIVSYNTLIN 158
           +A                       DY+  E  +   +QL          + V+YN LI 
Sbjct: 723 KAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIR 782

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            +CK G+++ A  +L  M   G   D  +++ +I   C+ G++K A    E M   G + 
Sbjct: 783 GFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNP 842

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
           +  AYN ++      G++  A  + + M  +    +  TY+S++H  C    + S +
Sbjct: 843 DTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTA 899



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 92/202 (45%), Gaps = 4/202 (1%)

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            G+  +I  +V+  R  +    +  M+  G+   I + + ++N   +  +   A  L DE
Sbjct: 146 LGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDE 205

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           +   G   D Y +T ++  LC+  +   AR  +  M   G D ++  YN  +  L K+ +
Sbjct: 206 IVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQR 265

Query: 236 IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           +  A+ +   +  K    D  TY ++V  LCK +   +  +++   ++ G    ++A   
Sbjct: 266 VWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSN 325

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           +VDGLR  G    A  + +K++
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVK 347


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 39/305 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNI+++ LC+N   D  + +   + +HG +P+++TY  +I G CK G +  A  +L+ +
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSM 418

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN ++YT ++K                            G C+         R 
Sbjct: 419 AACGCRPNTVSYTIVLK----------------------------GLCSA-------ERW 443

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A + M QM+  G   + V++NTLIN  CK+G +E A  LL +M   G   D  +++ +
Sbjct: 444 VDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTV 503

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGL KAGN   A   L  M K G   N   Y+ I   L  +G+I+  I +FE+++    
Sbjct: 504 IDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTV 563

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+  Y++++ +LCK      A + L   + SG    +S    ++ GL   G  +EA++
Sbjct: 564 RSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQE 623

Query: 308 IQSKI 312
           I +++
Sbjct: 624 ILTEL 628



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TF+ ++  LC+N   +    +   + +HG  P++  Y  +I G+CK  R
Sbjct: 243 MVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEER 302

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR IL  +   G +PN + Y T++K      +++    +L+ M  K    D   +  
Sbjct: 303 LEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNI 362

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G +    + +EQM+  G   D+++Y T+IN +CKEG ++ A +LL  M   G
Sbjct: 363 LVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACG 422

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++TI++ GLC A     A   +  M + G   N   +N +++ L K G ++ AI
Sbjct: 423 CRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 482

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + M V     D  +YS+++  L KA     A +LL   +K G+
Sbjct: 483 ELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGM 528



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 139/273 (50%), Gaps = 5/273 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           N++L  +C     D A+R+ R L    G  P++V+YN +++GLC A R    + +++E+ 
Sbjct: 185 NLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMV 244

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            +G  PN +T++T++    RN  ++   E+ + M   G   D   Y T+I    K  RL+
Sbjct: 245 AAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLE 304

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A   + +M + G+  ++V YNTL+   C   + E A  LL EM  +    D  T  IL+
Sbjct: 305 VARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILV 364

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           D LC+ G +      LE M + G   ++  Y  +++   K+G ID A+ +  SM      
Sbjct: 365 DFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCR 424

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            ++ +Y+ ++  LC A+R   A +L+   ++ G
Sbjct: 425 PNTVSYTIVLKGLCSAERWVDAEELMSQMIQQG 457



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 139/305 (45%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L GLC  R   +   +   +   G  P +VT++ LI  LC+ G       +
Sbjct: 215 PDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEV 274

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ + G AP+   Y TI+    +  + ++   IL+ M   G + +   Y T++     
Sbjct: 275 HAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCS 334

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R +EA   + +M      LD V++N L++  C+ G ++    +L++M + G   D  T
Sbjct: 335 ADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVIT 394

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +I+G CK G I  A + L  M   G   N  +Y  ++  L    +   A  +   M 
Sbjct: 395 YTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMI 454

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 +  T++++++ LCK   +  A +LL   L +G      +   V+DGL  +G   
Sbjct: 455 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTD 514

Query: 304 EAKKI 308
           EA ++
Sbjct: 515 EALEL 519



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 110/252 (43%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NG CK    D A+ + R +   G  P  V+Y I++KGLC A R   A  +
Sbjct: 390 PDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEEL 449

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  PN +T+ T++    +    +  +E+L  M   G + D   Y TVI    K
Sbjct: 450 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 509

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G   EA + +  MV  G+  + + Y+++ +    EG++     + + ++      D   
Sbjct: 510 AGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVL 569

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I  LCK G    A   L YM   G   N   Y  ++  L  +G +  A  +   + 
Sbjct: 570 YNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELC 629

Query: 248 VKDSFTYSSMVH 259
            K +     M H
Sbjct: 630 SKGALRKHLMKH 641



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 138/347 (39%), Gaps = 40/347 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++  LC      +AL +   + + G  P    Y++ ++  C+A   R A 
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAV 166

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL-SAMKRKGYTFDGFGYCTVIAA 124
            +L++L   G A +      +++           + +L   +   G   D   Y  V+  
Sbjct: 167 GVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRG 226

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
                R     D ME+MV  G   +IV+++TLI   C+ G  E  + +  +M + G   D
Sbjct: 227 LCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPD 286

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC------------------- 225
              +  +IDG+CK   ++ AR  L  M   G   N+  YN                    
Sbjct: 287 VRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLA 346

Query: 226 ----------------IVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
                           +VD L ++G +D  I V E M     + D  TY+++++  CK  
Sbjct: 347 EMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEG 406

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            +  A  LL S    G R    +   V+ GL  +    +A+++ S++
Sbjct: 407 LIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQM 453



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 35/205 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TFN ++N LCK    + A+ + + +  +G  P+L++Y+ +I GL KAG 
Sbjct: 453 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGN 512

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L  +   G +PN I Y++I                                  
Sbjct: 513 TDEALELLNVMVKKGMSPNTIIYSSIA--------------------------------- 539

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
             +A    GR+ +     E +    V+ D V YN +I+  CK G+ + A   L  M   G
Sbjct: 540 --SALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSG 597

Query: 181 FECDKYTHTILIDGLCKAGNIKGAR 205
              ++ T+TILI GL   G +K A+
Sbjct: 598 CVPNESTYTILIRGLASEGFVKEAQ 622


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 140/278 (50%), Gaps = 5/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P TATF  ++ GLC      +AL +F  +   GF P +VTY  LI GLCK G    A  +
Sbjct: 137 PDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRL 196

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      P+ + YT+I+    ++R+      + S M  +G + D F Y ++I +   
Sbjct: 197 LRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCN 256

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  + QM+   +  D+V ++T+++  CKEGK+  A+ ++D M  +G E +  T
Sbjct: 257 LCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVT 316

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +  L+DG C    +  A    + M   G+  N+ +YN +++   K  ++D A  +FE M 
Sbjct: 317 YNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMC 376

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               + ++ TY++++H  C   RL  A  L    +  G
Sbjct: 377 QKELIPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHG 413



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 141/315 (44%), Gaps = 40/315 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N +++G C     D A+++F  +  +G+ P +++YN LI G CK  R
Sbjct: 305 MIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQR 364

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A ++ +E+      PN +TY T+M  C                              
Sbjct: 365 MDKATYLFEEMCQKELIPNTVTYNTLMHXC------------------------------ 394

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                  +GRL++A     +MV  G   D+ +Y  L++  CK+  L+ A  LL  +E   
Sbjct: 395 ------HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN 448

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   +TI+IDG+C+AG ++ AR     ++  G   N+  Y  +++ L + G +D A 
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEAN 508

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+      D  TY+++   L + K    A +LL   L  G     S    +V+ L
Sbjct: 509 KLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEML 568

Query: 297 RHSGCRREAKKIQSK 311
                 +  K+I S+
Sbjct: 569 CDDKLDQSVKQILSE 583



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T+ A+R+ R +++    P++V Y  +I  LCK  +
Sbjct: 165 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 224

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++   G +P+  TYT+++       ++K    +L+ M       D   + T
Sbjct: 225 VTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFST 284

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G++ EA D ++ M+  GV+ ++V+YN L++ +C + +++ A  + D M   G
Sbjct: 285 VVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 344

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  +  ++  LI+G CK   +  A    E M +     N   YN ++      G++  AI
Sbjct: 345 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLM-HXCHVGRLQDAI 403

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M    ++ D  TY  ++  LCK   L  A  LL +   S +         V+DG+
Sbjct: 404 ALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGM 463

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A+ I S +
Sbjct: 464 CRAGELEAARDIFSNL 479



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T NI++N  C       A  +   + K G  P+  T+  LI+GLC  G++  A 
Sbjct: 100 IPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDAL 159

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TY T++    +       + +L +M++     D   Y ++I + 
Sbjct: 160 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 219

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA +   +MV  G+  DI +Y +LI+  C   + +    LL++M       D 
Sbjct: 220 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 279

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              + ++D LCK G I  A   ++ M   G + N+  YN ++D      ++D A+ VF++
Sbjct: 280 VIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT 339

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M       +  +Y+++++  CK +R+  A+ L 
Sbjct: 340 MVHNGYAPNVISYNTLINGYCKIQRMDKATYLF 372



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 126/278 (45%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN +L  + K +       +   +   G  P++ T NILI   C   RL  A  +
Sbjct: 67  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSV 126

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+  T+TT+++      K    L +   M  +G+  +   Y T+I    K
Sbjct: 127 LAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK 186

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G    A   +  M     Q D+V Y ++I+  CK+ ++  A+ L  +M  QG   D +T
Sbjct: 187 VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFT 246

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LI  LC     K     L  M       ++  ++ +VD L K+GKI  A +V + M 
Sbjct: 247 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 306

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++    +  TY++++   C    +  A K+  + + +G
Sbjct: 307 IRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 344


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 145/311 (46%), Gaps = 39/311 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N+M++GLC++   + A      +  +G  P+  TY  L+ GLCK GRL+ A+ +L E+
Sbjct: 282 TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEM 341

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG  PN + Y T++    +  K     +IL+ M   G   +   Y  +I    KIG+L
Sbjct: 342 SCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQL 401

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A+  + +M+  G + D  +Y+ L+  + +    + A+ LL+EM   G   + YT+ I+
Sbjct: 402 GRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIM 461

Query: 192 IDGLC-----------------------------------KAGNIKGARLHLEYMNKIGF 216
           I+GLC                                   K G+I  A   LE M K   
Sbjct: 462 INGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANV 521

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
             +L  YN ++  L   G+I+ A   +  ++    V D FTYS ++H  CK + L  A +
Sbjct: 522 LPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQ 581

Query: 273 LLLSCLKSGVR 283
           LL   L SG++
Sbjct: 582 LLQQMLNSGLK 592



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T++ ++ G  ++   D A  +   ++  G +P   TY I+I GLC+ G  + A  +
Sbjct: 418 PDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNL 477

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  PNA  Y  ++    +     L  E L  M +     D F Y ++I     
Sbjct: 478 LEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLST 537

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR++EA +Y  Q+   G+  D  +Y+ LI+ YCK   LE A  LL +M   G + +  T
Sbjct: 538 VGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADT 597

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L++G  K+ + +     L+ M   G   +   Y  ++  L +   ++ A  V   +E
Sbjct: 598 YTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVE 657

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D   YSS++  LCK   +  A  LL    K G+        A++DG   SG   
Sbjct: 658 KNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDIS 717

Query: 304 EAKKIQSKI 312
            A+ +   I
Sbjct: 718 RARNVFDSI 726



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 133/274 (48%), Gaps = 4/274 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   ++ P    +N ++ GL      + A   +  +QK G VP+  TY+ LI G CK   
Sbjct: 516 MTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRN 575

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L+++ +SG  PNA TYT +++  F++  ++    IL +M   G   D   Y  
Sbjct: 576 LEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGI 635

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    +   ++ A   + ++  +G+  D+  Y++LI+  CK   +E A  LLDEM K+G
Sbjct: 636 VIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEG 695

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E     +  LIDG C++G+I  AR   + +   G   N   Y  ++D   K+G I  A 
Sbjct: 696 LEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAF 755

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           ++++ M       D+F Y+ +      A  L  A
Sbjct: 756 DLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQA 789



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 9/314 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P    +  ++ G  K  +   A      + K   +P+L  YN LIKGL   GR
Sbjct: 481 MISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGR 540

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     ++   G  P+  TY+ ++    + R  +   ++L  M   G   +   Y  
Sbjct: 541 IEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTD 600

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K    ++ +  ++ M+  G + D   Y  +I    +   +E A+++L E+EK G
Sbjct: 601 LLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNG 660

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + ++ LI GLCK  +++ A   L+ M K G +  +  YN ++D   + G I  A 
Sbjct: 661 LVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRAR 720

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           NVF+S+  K    +  TY++++   CK   +  A  L    L  G+     A  A V  +
Sbjct: 721 NVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGI-----APDAFVYNV 775

Query: 297 RHSGCRREAKKIQS 310
             +GC   A   Q+
Sbjct: 776 LATGCSDAADLEQA 789



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 39/282 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++  L   CK R  D A ++F  +++       VTYN++I GLC++G +  A 
Sbjct: 241 IPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAF 300

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+ D G +P+A TY  +M                             G C      
Sbjct: 301 GFKEEMVDYGLSPDAFTYGALMN----------------------------GLC------ 326

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRLKEA   +++M   G++ ++V Y TL++ + KEGK   A+ +L+EM   G + +K
Sbjct: 327 -KGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNK 385

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV----DRLGKDGKIDHAIN 241
             +  LI GLCK G +  A   L  M K+G   +   Y+ ++        KDG  +    
Sbjct: 386 IMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNE 445

Query: 242 VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +  S  + +++TY  M++ LC+      A  LL   +  G++
Sbjct: 446 MRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLK 487



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 4/239 (1%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           ++L+    K G +RTA  ++  +GD G AP       ++K   R    +L  ++   M+ 
Sbjct: 179 DVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEG 238

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G   D + Y T + A  K      A    E+M      ++ V+YN +I+  C+ G +E 
Sbjct: 239 AGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEE 298

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A+   +EM   G   D +T+  L++GLCK G +K A+  L+ M+  G   N+  Y  +VD
Sbjct: 299 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVD 358

Query: 229 RLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              K+GK   A ++   M       +   Y +++  LCK  +L  ASKLL   +K G R
Sbjct: 359 GFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHR 417



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 6/304 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           TA  +++++   KN     A ++   +   G  P     N L+K L +A  +    W LK
Sbjct: 175 TAVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELV-WKLK 233

Query: 70  ELGD-SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
              + +G  P+  TY+T ++   + R +    ++   M+R+    +   Y  +I+   + 
Sbjct: 234 GFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRS 293

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G ++EA  + E+MV  G+  D  +Y  L+N  CK G+L+ A  LLDEM   G + +   +
Sbjct: 294 GAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVY 353

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-- 246
             L+DG  K G    A   L  M   G   N   Y+ ++  L K G++  A  +   M  
Sbjct: 354 ATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIK 413

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                D+FTY  ++    +      A +LL     SG+         +++GL  +G  +E
Sbjct: 414 VGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKE 473

Query: 305 AKKI 308
           A  +
Sbjct: 474 AGNL 477



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 9/253 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    + I++  L ++   + A  +   ++K+G VP+L  Y+ LI GLCK   +  A  +
Sbjct: 628 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGL 687

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P  + Y  ++    R+        +  ++  KG   +   Y  +I    K
Sbjct: 688 LDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCK 747

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + +A D  + M+  G+  D   YN L         LE A  L +EM  +G     Y 
Sbjct: 748 NGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG-----YA 802

Query: 188 H----TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           H    + L+ G CK G ++     L  M       N +    ++   GK GK+  A  VF
Sbjct: 803 HVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVF 862

Query: 244 ESMEVKDSFTYSS 256
             ++ K +   S+
Sbjct: 863 AELQQKKASQSST 875


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P  A  + +++GL K     +A  +   ++K G  P L  YN LI  +CK G+
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +   +G  G  PN +TY+ ++    +  K  + L  L  M   G     + Y +
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   K+G+L+ A    ++M+ +G++ ++V Y +LI+ YCKEG+L  A+ L  EM  +G
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + YT T LI GLC A  +  A      M +     N   YN +++   K+G    A 
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + + M     V D++TY  ++  LC   R+  A + +
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 135/295 (45%), Gaps = 15/295 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P    +  +++G CK     NA R++  +   G  P   T+  LI GLC A R
Sbjct: 451 MIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR 510

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ +    PN +TY  +++   +        E+L  M  KG   D + Y  
Sbjct: 511 MAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRP 570

Query: 121 VIAAFVKIGRLKEATDYMEQMV--------TDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
           +I+     GR+ EA ++M  +          +G   ++V+Y  LIN  CK G ++ A LL
Sbjct: 571 LISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELL 630

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
             EM       ++ T+   +D L   GNI K  +LH   +   GF +N   YN ++    
Sbjct: 631 CREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE--GFLANTVTYNILIRGFC 688

Query: 232 KDGKIDHA----INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           K G+I  A    +N+ +S    D  +YS++++  C+   L  A KL  S L  GV
Sbjct: 689 KLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGV 743



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 40/347 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M CG L P   T + +LNGL + R    AL +F  +   G  P++  Y  +++ LC+   
Sbjct: 172 MDCGIL-PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR ++  +  SG   +  TY   ++   +N++    +EI + +  KG   D   YCT
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 121 VIAAFVKIGRLKEATDYMEQMV--------------TDGVQ--------LDIVS------ 152
           ++    K+   +   + M +M+               DG++         D+V+      
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFG 350

Query: 153 -------YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                  YN LIN  CK+GKL+ A  L + M  +G   +  T++ILID  CK G +  A 
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
             L  M ++G  + +  Y+ ++    K GK+  A ++F+ M       +   Y+S++   
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           CK   L +A +L       G+        A++ GL H+    EA K+
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKL 517



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 144/303 (47%), Gaps = 4/303 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  F++++    +NR   + L + R +   G +P++ T + ++ GL +  + R A  +  
Sbjct: 145 TLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFD 204

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  SG  P+   YT +++     + +    E++  M+  G       Y   I    K  
Sbjct: 205 EIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQ 264

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+ EA +    +   G++ D+ +Y TL+   CK  + EA   +++EM + GF   +   +
Sbjct: 265 RVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVS 324

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            L+DGL K GNI  A   +  + K G   +L  YN +++ + KDGK+D A ++F +M  K
Sbjct: 325 NLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHK 384

Query: 250 DSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             F    TYS ++ + CK  +L  A   L    + G++       +++ G    G  R A
Sbjct: 385 GLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAA 444

Query: 306 KKI 308
           K +
Sbjct: 445 KSL 447



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 143/309 (46%), Gaps = 6/309 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+  ++ GLCK    +    M   + + GFVP     + L+ GL K G + +A  ++ 
Sbjct: 285 VGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVN 344

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G AP+   Y  ++    ++ K      + + M  KG   +   Y  +I +F K G
Sbjct: 345 KVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRG 404

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L  A  ++ +M   G++  +  Y++LI+ +CK GKL AA  L DEM   G + +   +T
Sbjct: 405 KLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYT 464

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-- 246
            LI G CK G +  A RL+ E   K G   N   +  ++  L    ++  A  +F  M  
Sbjct: 465 SLISGYCKEGELHNAFRLYHEMTGK-GISPNTYTFTALISGLCHANRMAEANKLFGEMVE 523

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
              + +  TY+ ++   CK      A +LL   ++ G+       + ++ GL  +G   E
Sbjct: 524 WNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSE 583

Query: 305 AKKIQSKIR 313
           A++  + ++
Sbjct: 584 AREFMNDLQ 592



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 19/240 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH--------GFVPELVTYNILI 52
           M+   L P T T+  +++GLC       A      LQ          G +P +VTY  LI
Sbjct: 556 MVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALI 615

Query: 53  KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT 112
            GLCK G +  A  + +E+  S   PN  TY      CF +     G  I  A++     
Sbjct: 616 NGLCKIGLMDKAELLCREMLASNSLPNQNTYA-----CFLDYLTSEG-NIEKAIQLHDVL 669

Query: 113 FDGF-----GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
            +GF      Y  +I  F K+GR++EA + +  M+  G+  D +SY+T+I  YC+ G L+
Sbjct: 670 LEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLK 729

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            A  L + M  +G   D   +  LI G C  G +  A    + M + G   N   YN ++
Sbjct: 730 EAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 789



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 134/302 (44%), Gaps = 30/302 (9%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   T+N+++ G CK   T  A  +   + + G VP+  TY  LI GLC  GR
Sbjct: 521 MVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGR 580

Query: 61  LRTARWILKELGDS--------GHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKR 108
           +  AR  + +L           G  PN +TYT ++    K    ++   L  E+L++   
Sbjct: 581 VSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSL 640

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
                    Y   +      G +++A   +  ++ +G   + V+YN LI  +CK G+++ 
Sbjct: 641 PNQN----TYACFLDYLTSEGNIEKAIQ-LHDVLLEGFLANTVTYNILIRGFCKLGRIQE 695

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  +L  M   G   D  +++ +I   C+ G++K A    E M   G + +  AYN ++ 
Sbjct: 696 AAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIY 755

Query: 229 RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK---------LLL 275
                G++  A  + + M  +    +  TY+S++H  C    + S +           LL
Sbjct: 756 GCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYFSCKLNWCFLL 815

Query: 276 SC 277
           SC
Sbjct: 816 SC 817



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 92/202 (45%), Gaps = 4/202 (1%)

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            G+  +I  +V+  R  +    +  M+  G+   I + + ++N   +  +   A  L DE
Sbjct: 146 LGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDE 205

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           +   G   D Y +T ++  LC+  +   AR  +  M   G D ++  YN  +  L K+ +
Sbjct: 206 IVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQR 265

Query: 236 IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           +  A+ +   +  K    D  TY ++V  LCK +   +  +++   ++ G    ++A   
Sbjct: 266 VWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSN 325

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           +VDGLR  G    A  + +K++
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVK 347


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 151/308 (49%), Gaps = 4/308 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
              ++I+++ LCK+   D+AL +F  ++  G   ++V Y+ +I GLC  GR      +L+
Sbjct: 244 VVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLR 303

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+      PN +T++ ++    +  K     E+ + M  +G   D   Y ++I  F K  
Sbjct: 304 EMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKEN 363

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL EA   ++ MV+ G + +IV+Y+ LIN YCK  +++    L  E+  +G   D  T+ 
Sbjct: 364 RLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYN 423

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            L+ G C++G +  A+   + M   G   ++  Y  ++D L  +G++  A+ +FE M+  
Sbjct: 424 TLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKS 483

Query: 250 DSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                   Y+ ++H +C A ++  A  L  S    GV+        ++ GL   G   EA
Sbjct: 484 RMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEA 543

Query: 306 KKIQSKIR 313
             +  K++
Sbjct: 544 DMLFRKMK 551



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 158/315 (50%), Gaps = 6/315 (1%)

Query: 8   PCTATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T N ++NGLC K R T+ AL +   + K+G     +TY  ++  +CK+G    A  
Sbjct: 172 PNVVTVNTLINGLCLKGRVTE-ALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALD 230

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +++ +     + + Y+ ++    ++      L + + M+ KG   D   Y ++I    
Sbjct: 231 LFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLC 290

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             GR  +    + +M+   +  ++V+++ LI+++ KEGKL  A  L +EM  +G   D  
Sbjct: 291 NDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTI 350

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LIDG CK   +  A   L+ M   G + N+  Y+ +++   K  ++D+ + +F  +
Sbjct: 351 TYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEI 410

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                V D+ TY+++V   C++ +L  A +L    +  GV         ++DGL  +G  
Sbjct: 411 SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 470

Query: 303 REAKKIQSKIRMAKI 317
           ++A +I  K++ +++
Sbjct: 471 QKALEIFEKMQKSRM 485



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 8/269 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N  C+ R    A  +     K GF P  +T++ LI G C  GR+  A  ++  +
Sbjct: 106 TMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRM 165

Query: 72  GDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            +  + PN +T  T++   C + R  +  L ++  M + G   +   Y  V+    K G 
Sbjct: 166 VEMKYRPNVVTVNTLINGLCLKGRVTE-ALVLIDRMVKYGCEANEITYGPVLNRMCKSGN 224

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
              A D   +M    ++  +V Y+ +I+  CK+G L+ A  L +EME +G + D   ++ 
Sbjct: 225 TALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSS 284

Query: 191 LIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           +I GLC  G    GA++  E + +     N+  ++ ++D   K+GK+  A  ++  M  +
Sbjct: 285 IIGGLCNDGRWDDGAKMLREMIGR-NIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVAR 343

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLL 274
               D+ TYSS++   CK  RL  A+++L
Sbjct: 344 GIAPDTITYSSLIDGFCKENRLGEANQML 372



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 141/291 (48%), Gaps = 4/291 (1%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
            + A+ +F  + +   +P L+ ++ L   + +           KE+  +G   N  T   
Sbjct: 50  VNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNI 109

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++ C  R RK      ++    + G+  +   + T+I  F   GR+ EA   +++MV   
Sbjct: 110 MINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMK 169

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            + ++V+ NTLIN  C +G++  A +L+D M K G E ++ T+  +++ +CK+GN   A 
Sbjct: 170 YRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALAL 229

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
                M +    +++  Y+ ++D L KDG +D A+++F  ME+K    D   YSS++  L
Sbjct: 230 DLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGL 289

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           C   R    +K+L   +   +        A++D     G   EAK++ +++
Sbjct: 290 CNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEM 340



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TF+ +++   K      A  ++  +   G  P+ +TY+ LI G CK  R
Sbjct: 305 MIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENR 364

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L  +   G  PN +TY+ ++    + ++   G+ +   +  KG   D   Y T
Sbjct: 365 LGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNT 424

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G+L  A +  ++MV+ GV   +V+Y  L++  C  G+L+ A  + ++M+K  
Sbjct: 425 LVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSR 484

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  + I+I G+C A  +  A      ++  G   ++  YN ++  L K G +  A 
Sbjct: 485 MILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEAD 544

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
            +F  M+ +D    S   +N+
Sbjct: 545 MLFRKMK-EDGCAPSDCTYNI 564



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 37/228 (16%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T++I++N  CK +  DN +R+F  +   G V + VTYN L++G C++G+
Sbjct: 375 MVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGK 434

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-YC 119
           L  A+ + +E+   G  P+ +TY  ++     N + +  LEI   M++      G G Y 
Sbjct: 435 LNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMIL-GIGIYN 493

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL------- 172
            +I       ++ +A      +   GV+ D+++YN +I   CK+G L  A +L       
Sbjct: 494 IIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKED 553

Query: 173 ----------------------------LDEMEKQGFECDKYTHTILI 192
                                       ++EM+ +GF  D  T  +++
Sbjct: 554 GCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVV 601



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+++G+C     D+A  +F  L   G  P+++TYN++I GLCK G L  A  + +++ 
Sbjct: 492 YNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMK 551

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           + G AP+  TY  +++           +E++  MK +G+  D      ++   +  GRL
Sbjct: 552 EDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADA-STIKMVVVMLSDGRL 609



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+M+ GLCK      A  +FR +++ G  P   TYNILI+       + ++  +
Sbjct: 522 PDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVEL 581

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           ++E+   G A +A T   ++      R  K  L++LS
Sbjct: 582 IEEMKMRGFAADASTIKMVVVMLSDGRLDKTFLDMLS 618



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++ EA D  E M+       ++ ++ L +   +  + +       EM+  G E + YT  
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-EV 248
           I+I+  C+   +  A   +    K GF+ N   ++ +++    +G++  A+ + + M E+
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 249 K---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           K   +  T +++++ LC   R+  A  L+   +K G
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYG 204


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 122/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K +     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +   M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ P+ +T
Sbjct: 407 MQRDGYMPSVVT 418


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 144/271 (53%), Gaps = 4/271 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+L GLC+N     A+ + R ++++  +P++V+YN +I+G C+   L  A  +  E+ 
Sbjct: 145 YNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQ 204

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG + + +T+  ++    +  K    + +L  MK KG   D   Y ++I  F   G L 
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELD 264

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
                 ++++  G     ++YNTLI  +CK G+L+ A  + + M ++G   + YT+T LI
Sbjct: 265 RGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLI 324

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DGLC  G  K A   L  M +   + N+  YN I+++L KD  +  A+ + E M+ +   
Sbjct: 325 DGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTR 384

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
            D+ TY+S++  LC    L  ASKLL   LK
Sbjct: 385 PDNITYNSLLGGLCAKGDLDEASKLLYLMLK 415



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 140/275 (50%), Gaps = 14/275 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++ G C+ +  + AL++   +Q  G    LVT+ ILI   CKAG++  A 
Sbjct: 173 LMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAM 232

Query: 66  WILKELGDSGHAPNAITYTTIMK----CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
            +LKE+   G   + I YT++++    C   +R   L  E+L     +G +     Y T+
Sbjct: 233 GLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVL----ERGDSPCAITYNTL 288

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F K+GRLKEA++  E M+  GV+ ++ +Y  LI+  C  GK + A  LL+ M ++  
Sbjct: 289 IRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDE 348

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E +  T+ I+I+ LCK   +  A   +E M K     +   YN ++  L   G +D A  
Sbjct: 349 EPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASK 408

Query: 242 VFESMEVKDSFT------YSSMVHNLCKAKRLPSA 270
           +   M    S+T      +++++H LCK  RL  A
Sbjct: 409 LLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQA 443



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 41/317 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +PC  T+N ++ G CK      A  +F  + + G  P + TY  LI GLC  G+ + A  
Sbjct: 279 SPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQ 338

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +      PN +TY  I+    ++      LEI+  MK++    D   Y +++    
Sbjct: 339 LLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLC 398

Query: 127 KIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAY-------------- 170
             G L EA+  +  M+ D      D++S+N LI+  CK  +L  A               
Sbjct: 399 AKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGD 458

Query: 171 -----LLLDEMEKQG----------------FECDKYTHTILIDGLCKAGNIKGARLHLE 209
                +LL+   K G                   +  T+T +IDG CK G +  A+  L 
Sbjct: 459 IVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLC 518

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAK 265
            M       ++  YNC++  L K G +D A  +FE M+  DSF    +++ M+    KA 
Sbjct: 519 KMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAG 578

Query: 266 RLPSASKLLLSCLKSGV 282
            + SA  LL+    +G+
Sbjct: 579 DIKSAESLLVGMSHAGL 595



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 153/313 (48%), Gaps = 6/313 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I+++  CK    D A+ + + ++  G   +L+ Y  LI+G C  G L   + +  E
Sbjct: 213 VTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDE 272

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + + G +P AITY T+++   +  + K   EI   M  +G   + + Y  +I     +G+
Sbjct: 273 VLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGK 332

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            KEA   +  M+    + ++V+YN +IN  CK+  +  A  +++ M+K+    D  T+  
Sbjct: 333 TKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNS 392

Query: 191 LIDGLCKAGNIKGAR--LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF----E 244
           L+ GLC  G++  A   L+L   +    D ++ ++N ++  L K  ++  A++++    E
Sbjct: 393 LLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVE 452

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
            +   D  T + ++++  K+  +  A +L      S +         ++DG   +G    
Sbjct: 453 KLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNV 512

Query: 305 AKKIQSKIRMAKI 317
           AK +  K+R++++
Sbjct: 513 AKGLLCKMRLSEL 525



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 2/241 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTAR 65
           P   T+N +L GLC     D A ++   + K      P+++++N LI GLCK  RL  A 
Sbjct: 385 PDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQAL 444

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   L +   A + +T   ++    ++      +E+   +       +   Y T+I  F
Sbjct: 445 DIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGF 504

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L  A   + +M    +   +  YN L++  CK+G L+ A+ L +EM++     D 
Sbjct: 505 CKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDV 564

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  I+IDG  KAG+IK A   L  M+  G   +L  Y+ +++R  K G +D AI+ F+ 
Sbjct: 565 ISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDK 624

Query: 246 M 246
           M
Sbjct: 625 M 625



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 4/265 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N ++  L ++R  + A   +R + +       V+ + L++   +  +   A  +L  +  
Sbjct: 76  NNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLK 135

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G A N   Y  ++K   RN ++   + +L  M++     D   Y TVI  F +   L++
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEK 195

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A     +M   G    +V++  LI+ +CK GK++ A  LL EM+ +G E D   +T LI 
Sbjct: 196 ALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIR 255

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           G C  G +   +   + + + G       YN ++    K G++  A  +FE M  +    
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRP 315

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLL 274
           + +TY+ ++  LC   +   A +LL
Sbjct: 316 NVYTYTGLIDGLCGVGKTKEALQLL 340



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +FN +++GLCK      AL ++  L +     ++VT NIL+    K+G +  A  +
Sbjct: 422 PDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMEL 481

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++ +S   PN+ TYTT++    +     +   +L  M+        F Y  ++++  K
Sbjct: 482 WKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCK 541

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L +A    E+M  D    D++S+N +I+   K G +++A  LL  M   G   D +T
Sbjct: 542 KGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFT 601

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI+   K G +  A    + M   GF+ +    + ++      G+ D      + + 
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKLV 661

Query: 248 VKD 250
            KD
Sbjct: 662 DKD 664



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +L P    +N +L+ LCK    D A R+F  +Q+    P+++++NI+I G  KAG 
Sbjct: 520 MRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGD 579

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG-----LEILSAMKRKGYTFDG 115
           +++A  +L  +  +G +P+  TY+ ++     NR  KLG     +     M   G+  D 
Sbjct: 580 IKSAESLLVGMSHAGLSPDLFTYSKLI-----NRFLKLGYLDEAISFFDKMIDSGFEPDA 634

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-KEGKLEAAYLLL 173
               +V+   +  G   + T++++++V   V LD     T+++  C   G ++ A  LL
Sbjct: 635 HICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMDYMCSSSGNMDIAKRLL 693



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 92/201 (45%), Gaps = 1/201 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P + T+  M++G CK    + A  +   ++     P +  YN L+  LCK G L  A 
Sbjct: 490 IVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAW 549

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+      P+ I++  ++    +    K    +L  M   G + D F Y  +I  F
Sbjct: 550 RLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRF 609

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K+G L EA  + ++M+  G + D    ++++     +G+ +     + ++  +    DK
Sbjct: 610 LKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDK 669

Query: 186 YTHTILIDGLC-KAGNIKGAR 205
                ++D +C  +GN+  A+
Sbjct: 670 ELTCTVMDYMCSSSGNMDIAK 690


>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
          Length = 633

 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 144/279 (51%), Gaps = 7/279 (2%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +  D   CT    +     C+ R  D A  + R +  +G  P++VTY+ LI GLC AG++
Sbjct: 213 VAPDAAACTVLVGVYA---CRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQV 269

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  +L  + + G  PNA TYT I+       +      +L+ M   G+      Y  +
Sbjct: 270 AEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVL 329

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           + A  K+G  +E    +E+    G   D+++Y++ ++  CK G+++ ++ L+D+M   G 
Sbjct: 330 VEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGL 389

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           +  + T  IL+DG+C++     A+  LE   ++G+D+N+  YN ++ RL  + +    + 
Sbjct: 390 QPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRRLCDERRWLSVVK 449

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLS 276
           +F  M  K    +S+T++ +VH+LCK  RL  A  LL S
Sbjct: 450 LFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALCLLRS 488



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 7/237 (2%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF--VKIGRLKEAT 135
           P+A  +TT+        +    L +L AM   G   D    CTV+      ++ R   A 
Sbjct: 180 PDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDA-AACTVLVGVYACRLRRFDAAY 238

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + +  MV +GV  D+V+Y+TLI+  C  G++  A  +LD M ++G + + +T+T ++   
Sbjct: 239 EVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAY 298

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           C  G I  A+  L  M   GF  +   YN +V+ L K G  +    + E    K    D 
Sbjct: 299 CTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDV 358

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            TYSS +  LCKA R+  +  L+   L +G++  +     ++DG+  S     AK++
Sbjct: 359 ITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRL 415



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 108/266 (40%), Gaps = 65/266 (24%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T++  ++GLCK    D +  +   +  +G  P  VT NIL+ G+C++     A+ 
Sbjct: 355 TPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKR 414

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+   + G   N + Y T+M+     R++   +++ + M +KG   + + +  V+ +  
Sbjct: 415 LLECSAELGWDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLC 474

Query: 127 KIGRLKEATDYME--------------------------------QMVTDGVQLDIVSYN 154
           K+GRL +A   +                                 QM+  G+  + ++Y+
Sbjct: 475 KLGRLHKALCLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYS 534

Query: 155 TLINLYCKEGK----------------LEAAYL----------LLDEMEK-------QGF 181
            +I+  C+E K                  +A+L          +L ++         QGF
Sbjct: 535 LVIDCLCREEKFLVALCCFYQSLEDDFFPSAFLSIIRGLIVGGMLGQLHTLIGCVLGQGF 594

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLH 207
             + Y +  LI  LCK G  +   ++
Sbjct: 595 IIEVYIYQELIKALCKNGYCQSVEMY 620



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 5/159 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P + TFNI+++ LCK      AL + R  +   FV  ++TYN LI+ L  +G      
Sbjct: 459 IAPNSWTFNIVVHSLCKLGRLHKALCLLRSKE---FVATVITYNTLIRHLSISGEGNEVC 515

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++ + G APN ITY+ ++ C  R  K+ + L          +    F   ++I   
Sbjct: 516 LLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSAF--LSIIRGL 573

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           +  G L +    +  ++  G  +++  Y  LI   CK G
Sbjct: 574 IVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNG 612


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 157/311 (50%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   T+  +++  CK      AL++   + + G    +VTY  L+ GLC+ GR++ A 
Sbjct: 391 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAE 450

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + + ++G APN  TYT ++    + ++ +   +IL  MK K    D   Y T++   
Sbjct: 451 EVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGL 510

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               RL+EA   + ++   G+  + V Y TL++ Y K G+   A  LL+EM   G    +
Sbjct: 511 CNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATE 570

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDGLCK+G ++ A  H   M++IG   N+  Y  +VD L K+   + A  +F+ 
Sbjct: 571 VTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDE 630

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     + D   Y++++    K   L  A  L    ++ G+ +   A  A++ GL HSG 
Sbjct: 631 MLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQ 690

Query: 302 RREAKKIQSKI 312
            ++A+ +  ++
Sbjct: 691 VQKARNLLDEM 701



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 145/298 (48%), Gaps = 4/298 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NIM++ LCK    + A  +F  +++ GF P++VTYN LI G  K G L     I +++
Sbjct: 257 TYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM 316

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D+   P+ ITY  ++ C  +  +     E L  MK  G   +   Y T I AF K G L
Sbjct: 317 KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGML 376

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA  +   M    +  +  +Y +LI+  CK G L  A  L++E+ + G + +  T+T L
Sbjct: 377 QEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTAL 436

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +DGLC+ G +K A      M   G   N E Y  +V    K  ++++A ++ + M+ K  
Sbjct: 437 LDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 496

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             D   Y +++  LC   RL  A  L+    +SG+         ++D    SG   EA
Sbjct: 497 KPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEA 554



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 124/246 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  +++G  K +  + A  + + +++    P+L+ Y  ++ GLC   R
Sbjct: 456 MLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESR 515

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ ++ E+ +SG   NA+ YTT+M   F++ +    L +L  M   G       YC 
Sbjct: 516 LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCA 575

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G ++EA  +  +M   G+Q ++  Y  L++  CK    E A  L DEM  +G
Sbjct: 576 LIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKG 635

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              DK  +T LIDG  K GN++ A    + M +IG + +L AY  ++  L   G++  A 
Sbjct: 636 MMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKAR 695

Query: 241 NVFESM 246
           N+ + M
Sbjct: 696 NLLDEM 701



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 154/342 (45%), Gaps = 39/342 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP   T+N +++G  K    D  + +F  ++     P+++TYN LI   CK  R+  A 
Sbjct: 286 FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAF 345

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L E+  +G  PN +TY+T +    +    +  ++    M+R   T + F Y ++I A 
Sbjct: 346 EFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDAN 405

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L EA   +E+++  G++L++V+Y  L++  C+EG+++ A  +   M   G   ++
Sbjct: 406 CKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQ 465

Query: 186 YTHTILID-----------------------------------GLCKAGNIKGARLHLEY 210
            T+T L+                                    GLC    ++ A+L +  
Sbjct: 466 ETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGE 525

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKR 266
           + + G ++N   Y  ++D   K G+   A+ + E M     +    TY +++  LCK+  
Sbjct: 526 IKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGL 585

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +  A        + G++   +   A+VDGL  + C   AKK+
Sbjct: 586 VQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKL 627



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 4/311 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ + + L +    + A   F  ++K    P+  + N L+  L K GR   +R 
Sbjct: 182 VPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRK 241

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             K++G +G   +  TY  ++    +    ++   + + MK  G+T D   Y ++I    
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 301

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G L E     EQM       D+++YN LIN +CK  ++  A+  L EM+  G + +  
Sbjct: 302 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVV 361

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++  ID  CK G ++ A      M ++    N   Y  ++D   K G +  A+ + E +
Sbjct: 362 TYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEI 421

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                  +  TY++++  LC+  R+  A ++  + L +GV   +    A+V G   +   
Sbjct: 422 LQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEM 481

Query: 303 REAKKIQSKIR 313
             AK I  +++
Sbjct: 482 EYAKDILKEMK 492



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 5/209 (2%)

Query: 115 GFG-YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           GFG +  + +A +++G L+EA++   +M    V     S N L++   K G+ + +    
Sbjct: 184 GFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFF 243

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            +M   G +   +T+ I+ID LCK G+++ AR     M + GF  ++  YN ++D  GK 
Sbjct: 244 KDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKL 303

Query: 234 GKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G +D  I +FE M+      D  TY+++++  CK +R+P A + L     +G++      
Sbjct: 304 GLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTY 363

Query: 290 KAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
              +D     G  +EA K    +R   ++
Sbjct: 364 STFIDAFCKEGMLQEAIKFFVDMRRVALT 392



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L     T+  +++GLCK+     A+  F  + + G  P +  Y  L+ GLCK      A+
Sbjct: 566 LIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAK 625

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  P+ I YT ++    ++   +  L +   M   G   D   Y  +I   
Sbjct: 626 KLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGL 685

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
              G++++A + +++M+  GV  D V Y  LI  Y   GK++ A  L +EM K+G
Sbjct: 686 SHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRG 740



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 15/228 (6%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++   K+     AL +   +   G +   VTY  LI GLCK+G ++ A      + 
Sbjct: 538 YTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMS 597

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  PN   YT ++    +N  +++  ++   M  KG   D   Y  +I   +K G L+
Sbjct: 598 EIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQ 657

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA +  ++M+  G++LD+ +Y  LI      G+++ A  LLDEM  +G   D+  +  LI
Sbjct: 658 EALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLI 717

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 G +               D  LE  N +  R    G  DHA+
Sbjct: 718 KKYYALGKV---------------DEALELQNEMAKRGMITGLSDHAV 750



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 4/195 (2%)

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+GR   +  + + M   G++  + +YN +I+  CKEG LE A  L  +M++ GF  D  
Sbjct: 232 KVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIV 291

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LIDG  K G +       E M     D ++  YN +++   K  ++  A      M
Sbjct: 292 TYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEM 351

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +      +  TYS+ +   CK   L  A K  +   +  +   +    +++D    +G  
Sbjct: 352 KANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNL 411

Query: 303 REAKKIQSKIRMAKI 317
            EA K+  +I  A I
Sbjct: 412 AEALKLVEEILQAGI 426


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 125/250 (50%), Gaps = 1/250 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D  ++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDX 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 MEVKDSFTYS 255
           M+ +D +  S
Sbjct: 407 MQ-RDGYVPS 415



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 113/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I  ++     +P+ ITY T++    +    K   ++   M  KG   D   Y T
Sbjct: 257 VDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +I+ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A      M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKM 368



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+   + M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYVPSVVT 418


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 125/250 (50%), Gaps = 1/250 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D  ++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 MEVKDSFTYS 255
           M+ +D +  S
Sbjct: 407 MQ-RDGYAPS 415



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   ++   M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+   + M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 137/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+AP+ +T
Sbjct: 409 RDGYAPSVVT 418


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 152/308 (49%), Gaps = 36/308 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ ++L  +CK+     A+ +   ++  G  P +VTYN++I G+C+ GR+  AR  
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 268

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  L   G  P+ ++YTT++K     ++++   E+ + M  K    +   +  ++  F +
Sbjct: 269 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 328

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A   +EQM   G   +    N +IN  CK+G+++ A+  L+ M   G   D  +
Sbjct: 329 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 388

Query: 188 HTILIDGLCKA-----------------------------------GNIKGARLHLEYMN 212
           +T ++ GLC+A                                   G I+ A + +E M+
Sbjct: 389 YTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 448

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSAS 271
           + G + N+  YN +V+     G++D A+ +F SM  K ++ TY++++  LC A+RL +A+
Sbjct: 449 EHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAA 508

Query: 272 KLLLSCLK 279
           +LL   L+
Sbjct: 509 ELLAEMLQ 516



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 139/279 (49%), Gaps = 7/279 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF++++   C+    + A+++   +  HG        NI+I  +CK GR+  A   
Sbjct: 314 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 373

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +G  G +P+ I+YTT++K   R  +++   E+L  M RK    +   + T I    +
Sbjct: 374 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 433

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +++AT  +EQM   G +++IV+YN L+N +C +G++++A  L   M  +    +  T
Sbjct: 434 KGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKP---NTIT 490

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+ GLC A  +  A   L  M +     N+  +N +V    + G +D AI + E M 
Sbjct: 491 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 550

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 +  TY++++  + K      A +LL   + +GV
Sbjct: 551 EHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGV 589



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N ++ G C+    D A R+   +      P+  TY  +I+GLC  GR+  A  +L ++ 
Sbjct: 147 YNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 203

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P+ +TYT +++   ++  +   +E+L  M+ KG T +   Y  +I    + GR+ 
Sbjct: 204 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 263

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A +++ ++ + G Q D VSY T++   C   + E    L  EM ++    ++ T  +L+
Sbjct: 264 DAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLV 323

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
              C+ G ++ A   LE M+  G  +N    N +++ + K G++D A     +M      
Sbjct: 324 RFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCS 383

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D+ +Y++++  LC+A+R   A +LL
Sbjct: 384 PDTISYTTVLKGLCRAERWEDAKELL 409



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 126/286 (44%), Gaps = 7/286 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   TFN  +  LC+    + A  +   + +HG    +VTYN L+ G C  GR
Sbjct: 412 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 471

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A   L+        PN ITYTT++       +     E+L+ M +K    +   +  
Sbjct: 472 VDSA---LELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 528

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F + G + EA + +EQM+  G   ++++YNTL++   K+   E A  LL  +   G
Sbjct: 529 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 588

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ +I  L +   ++ A      +  +G       YN I+  L K    D AI
Sbjct: 589 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 648

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + F  M     + +  TY +++  L     L     LL      GV
Sbjct: 649 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 694



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 128/261 (49%), Gaps = 7/261 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P T ++  +L GLC+    ++A  + + + +    P  VT+N  I  LC+ G +  A  
Sbjct: 383 SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATM 442

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++++ + G   N +TY  ++       +    LE+  +M  K  T     Y T++    
Sbjct: 443 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTIT---YTTLLTGLC 499

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
              RL  A + + +M+      ++V++N L++ +C++G ++ A  L+++M + G   +  
Sbjct: 500 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLI 559

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  L+DG+ K  N + A   L  +   G   ++  Y+ I+  L ++ +++ AI +F  +
Sbjct: 560 TYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIV 619

Query: 247 E----VKDSFTYSSMVHNLCK 263
           +       +  Y+ ++  LCK
Sbjct: 620 QDLGMRPKAVIYNKILLALCK 640



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 7/253 (2%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           +  A R+       G  P++     LI+ LC+ GR   A  +L+    SG A +   Y T
Sbjct: 90  SPRAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 149

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    R  +      ++++M       D + Y  +I      GR+ EA   ++ M+  G
Sbjct: 150 LVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 206

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            Q  +V+Y  L+   CK      A  +LDEM  +G   +  T+ ++I+G+C+ G +  AR
Sbjct: 207 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 266

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ESME---VKDSFTYSSMVHNL 261
             L  ++  GF  +  +Y  ++  L    + +    +F E ME   + +  T+  +V   
Sbjct: 267 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 326

Query: 262 CKAKRLPSASKLL 274
           C+   +  A ++L
Sbjct: 327 CRGGMVERAIQVL 339



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +++  + G   D+     LI   C+ G+   A  +L   E+ G   D + +  L+ 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           G C+ G +  AR  +  M  +  D+    Y  I+  L   G++  A+++ + M  +    
Sbjct: 153 GYCRYGQLDAARRLIASM-PVAPDAY--TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 209

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
              TY+ ++  +CK+     A ++L      G          +++G+   G   +A++  
Sbjct: 210 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 269

Query: 310 SKI 312
           +++
Sbjct: 270 NRL 272


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 152/308 (49%), Gaps = 36/308 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ ++L  +CK+     A+ +   ++  G  P +VTYN++I G+C+ GR+  AR  
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  L   G  P+ ++YTT++K     ++++   E+ + M  K    +   +  ++  F +
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A   +EQM   G   +    N +IN  CK+G+++ A+  L+ M   G   D  +
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 357

Query: 188 HTILIDGLCKA-----------------------------------GNIKGARLHLEYMN 212
           +T ++ GLC+A                                   G I+ A + +E M+
Sbjct: 358 YTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSAS 271
           + G + N+  YN +V+     G++D A+ +F SM  K ++ TY++++  LC A+RL +A+
Sbjct: 418 EHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAA 477

Query: 272 KLLLSCLK 279
           +LL   L+
Sbjct: 478 ELLAEMLQ 485



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 139/279 (49%), Gaps = 7/279 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF++++   C+    + A+++   +  HG        NI+I  +CK GR+  A   
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +G  G +P+ I+YTT++K   R  +++   E+L  M RK    +   + T I    +
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 402

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +++AT  +EQM   G +++IV+YN L+N +C +G++++A  L   M  +    +  T
Sbjct: 403 KGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKP---NTIT 459

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+ GLC A  +  A   L  M +     N+  +N +V    + G +D AI + E M 
Sbjct: 460 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 519

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 +  TY++++  + K      A +LL   + +GV
Sbjct: 520 EHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGV 558



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N ++ G C+    D A R+   +      P+  TY  +I+GLC  GR+  A  +L ++ 
Sbjct: 116 YNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 172

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P+ +TYT +++   ++  +   +E+L  M+ KG T +   Y  +I    + GR+ 
Sbjct: 173 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A +++ ++ + G Q D VSY T++   C   + E    L  EM ++    ++ T  +L+
Sbjct: 233 DAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLV 292

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
              C+ G ++ A   LE M+  G  +N    N +++ + K G++D A     +M      
Sbjct: 293 RFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCS 352

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D+ +Y++++  LC+A+R   A +LL
Sbjct: 353 PDTISYTTVLKGLCRAERWEDAKELL 378



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 126/286 (44%), Gaps = 7/286 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   TFN  +  LC+    + A  +   + +HG    +VTYN L+ G C  GR
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 440

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A  +   +      PN ITYTT++       +     E+L+ M +K    +   +  
Sbjct: 441 VDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F + G + EA + +EQM+  G   ++++YNTL++   K+   E A  LL  +   G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 557

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ +I  L +   ++ A      +  +G       YN I+  L K    D AI
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + F  M     + +  TY +++  L     L     LL      GV
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 128/261 (49%), Gaps = 7/261 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P T ++  +L GLC+    ++A  + + + +    P  VT+N  I  LC+ G +  A  
Sbjct: 352 SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATM 411

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++++ + G   N +TY  ++       +    LE+  +M  K  T     Y T++    
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTIT---YTTLLTGLC 468

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
              RL  A + + +M+      ++V++N L++ +C++G ++ A  L+++M + G   +  
Sbjct: 469 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLI 528

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  L+DG+ K  N + A   L  +   G   ++  Y+ I+  L ++ +++ AI +F  +
Sbjct: 529 TYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIV 588

Query: 247 E----VKDSFTYSSMVHNLCK 263
           +       +  Y+ ++  LCK
Sbjct: 589 QDLGMRPKAVIYNKILLALCK 609



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 7/250 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A R+       G  P++     LI+ LC+ GR   A  +L+    SG A +   Y T++ 
Sbjct: 62  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 121

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R  +      ++++M       D + Y  +I      GR+ EA   ++ M+  G Q 
Sbjct: 122 GYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 178

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
            +V+Y  L+   CK      A  +LDEM  +G   +  T+ ++I+G+C+ G +  AR  L
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 238

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ESME---VKDSFTYSSMVHNLCKA 264
             ++  GF  +  +Y  ++  L    + +    +F E ME   + +  T+  +V   C+ 
Sbjct: 239 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG 298

Query: 265 KRLPSASKLL 274
             +  A ++L
Sbjct: 299 GMVERAIQVL 308



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 7/230 (3%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           N  ++ L     L  A  ++      G AP+    T +++   R  +      +L A +R
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G   D F Y T++A + + G+L  A   +  M    V  D  +Y  +I   C  G++  
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGE 163

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  LLD+M  +G +    T+T+L++ +CK+     A   L+ M   G   N+  YN I++
Sbjct: 164 ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIIN 223

Query: 229 RLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            + ++G++D A      +       D+ +Y++++  LC AKR     +L 
Sbjct: 224 GMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELF 273



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 7/186 (3%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA   +++  + G   D+     LI   C+ G+   A  +L   E+ G   D + +  
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           L+ G C+ G +  AR  +  M  +  D+    Y  I+  L   G++  A+++ + M  + 
Sbjct: 119 LVAGYCRYGQLDAARRLIASM-PVAPDAY--TYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
                 TY+ ++  +CK+     A ++L      G          +++G+   G   +A+
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 307 KIQSKI 312
           +  +++
Sbjct: 236 EFLNRL 241


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 152/308 (49%), Gaps = 36/308 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ ++L  +CK+     A+ +   ++  G  P +VTYN++I G+C+ GR+  AR  
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  L   G  P+ ++YTT++K     ++++   E+ + M  K    +   +  ++  F +
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A   +EQM   G   +    N +IN  CK+G+++ A+  L+ M   G   D  +
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 357

Query: 188 HTILIDGLCKA-----------------------------------GNIKGARLHLEYMN 212
           +T ++ GLC+A                                   G I+ A + +E M+
Sbjct: 358 YTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSAS 271
           + G + N+  YN +V+     G++D A+ +F SM  K ++ TY++++  LC A+RL +A+
Sbjct: 418 EHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAA 477

Query: 272 KLLLSCLK 279
           +LL   L+
Sbjct: 478 ELLAEMLQ 485



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 138/279 (49%), Gaps = 7/279 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF++++   C+    + A+++   +  HG        NI+I  +CK GR+  A   
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +G  G +P+ I+YTT++K   R  +++   E+L  M RK    +   + T I    +
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 402

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +++AT  +EQM   G +++IV+YN L+N +C +G++++A  L   M  +    +  T
Sbjct: 403 KGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKP---NTIT 459

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+ GLC A  +  A   L  M +     N+  +N +V    + G +D AI + E M 
Sbjct: 460 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 519

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 +  TY++++  +        A +LL   + +GV
Sbjct: 520 EHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGV 558



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N ++ G C+    D A R+   +      P+  TY  +I+GLC  GR+  A  +L ++ 
Sbjct: 116 YNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 172

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P+ +TYT +++   ++  +   +E+L  M+ KG T +   Y  +I    + GR+ 
Sbjct: 173 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A +++ ++ + G Q D VSY T++   C   + E    L  EM ++    ++ T  +L+
Sbjct: 233 DAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLV 292

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
              C+ G ++ A   LE M+  G  +N    N +++ + K G++D A     +M      
Sbjct: 293 RFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCS 352

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D+ +Y++++  LC+A+R   A +LL
Sbjct: 353 PDTISYTTVLKGLCRAERWEDAKELL 378



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 125/286 (43%), Gaps = 7/286 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   TFN  +  LC+    + A  +   + +HG    +VTYN L+ G C  GR
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 440

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A  +   +      PN ITYTT++       +     E+L+ M +K    +   +  
Sbjct: 441 VDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F + G + EA + +EQM+  G   ++++YNTL++    +   E A  LL  +   G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNG 557

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ +I  L +   ++ A      +  +G       YN I+  L K    D AI
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + F  M     + +  TY +++  L     L     LL      GV
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 127/261 (48%), Gaps = 7/261 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P T ++  +L GLC+    ++A  + + + +    P  VT+N  I  LC+ G +  A  
Sbjct: 352 SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATM 411

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++++ + G   N +TY  ++       +    LE+  +M  K  T     Y T++    
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTIT---YTTLLTGLC 468

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
              RL  A + + +M+      ++V++N L++ +C++G ++ A  L+++M + G   +  
Sbjct: 469 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLI 528

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  L+DG+    N + A   L  +   G   ++  Y+ I+  L ++ +++ AI +F  +
Sbjct: 529 TYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIV 588

Query: 247 E----VKDSFTYSSMVHNLCK 263
           +       +  Y+ ++  LCK
Sbjct: 589 QDLGMRPKAVIYNKILLALCK 609



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 7/250 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A R+       G  P++     LI+ LC+ GR   A  +L+    SG A +   Y T++ 
Sbjct: 62  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 121

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R  +      ++++M       D + Y  +I      GR+ EA   ++ M+  G Q 
Sbjct: 122 GYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 178

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
            +V+Y  L+   CK      A  +LDEM  +G   +  T+ ++I+G+C+ G +  AR  L
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 238

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ESME---VKDSFTYSSMVHNLCKA 264
             ++  GF  +  +Y  ++  L    + +    +F E ME   + +  T+  +V   C+ 
Sbjct: 239 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG 298

Query: 265 KRLPSASKLL 274
             +  A ++L
Sbjct: 299 GMVERAIQVL 308



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 7/230 (3%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           N  ++ L     L  A  ++      G AP+    T +++   R  +      +L A +R
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G   D F Y T++A + + G+L  A   +  M    V  D  +Y  +I   C  G++  
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGE 163

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  LLD+M  +G +    T+T+L++ +CK+     A   L+ M   G   N+  YN I++
Sbjct: 164 ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIIN 223

Query: 229 RLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            + ++G++D A      +       D+ +Y++++  LC AKR     +L 
Sbjct: 224 GMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELF 273



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 7/186 (3%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA   +++  + G   D+     LI   C+ G+   A  +L   E+ G   D + +  
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           L+ G C+ G +  AR  +  M  +  D+    Y  I+  L   G++  A+++ + M  + 
Sbjct: 119 LVAGYCRYGQLDAARRLIASM-PVAPDA--YTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
                 TY+ ++  +CK+     A ++L      G          +++G+   G   +A+
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 307 KIQSKI 312
           +  +++
Sbjct: 236 EFLNRL 241


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 151/307 (49%), Gaps = 6/307 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    F  +L  L K ++   A+ + + ++  G  P LVT NILI   C  G++  +  
Sbjct: 49  TPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFS 108

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +L ++   G+ PN IT TT+MK  C +    K  +     +  +G+  +   Y T++   
Sbjct: 109 VLGKILKLGYQPNTITLTTLMKGLCLKGEVQK-SVHFHDKVVAQGFQMNQVSYGTLLNGL 167

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            KIG  + A  ++  +      L++V YNT+I+  CK+  +  AY    EM  +G   + 
Sbjct: 168 CKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNV 227

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI G C AG + GA   L  M     + N+  Y  ++D L K+GK+  A N+   
Sbjct: 228 ITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAE 287

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D  TY+S++   CK + L  A+ L +   + G++  K    A++DGL   G 
Sbjct: 288 MHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGR 347

Query: 302 RREAKKI 308
            ++A+K+
Sbjct: 348 LKDAQKL 354



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 124/267 (46%), Gaps = 4/267 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T   ++ GLC       ++     +   GF    V+Y  L+ GLCK G  R A   
Sbjct: 120 PNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKF 179

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ + DS    N + Y TI+    +++      +  S M  +G   +   Y T+I  F  
Sbjct: 180 LRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCL 239

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L  A   + +M+   +  ++ +Y  LI+  CKEGK++ A  LL EM  +G   D  T
Sbjct: 240 AGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVT 299

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+DG CK  N+  A      M + G   N   Y  ++D L K G++  A  +F+ + 
Sbjct: 300 YTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLL 359

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSA 270
           VK    D  TY+ M+  LCK   L  A
Sbjct: 360 VKGCCIDVCTYNVMIGGLCKEGMLDEA 386



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 111/237 (46%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N +++GLCK++  + A   +  +   G  P ++TY  LI G C AG+L  A  +L E+ 
Sbjct: 195 YNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMI 254

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                PN  TY  ++    +  K K    +L+ M  +G   D   Y +++  F K   L 
Sbjct: 255 LKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLD 314

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +AT    +M   G+Q +  +Y  LI+  CK G+L+ A  L  ++  +G   D  T+ ++I
Sbjct: 315 KATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMI 374

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            GLCK G +  A      M   G   N+  +  I+  L K  + D A  +   M  K
Sbjct: 375 GGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAK 431



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 1/207 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++ G C       A  +   +      P + TY ILI  LCK G+++ A+ +
Sbjct: 225 PNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNL 284

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G   + +TYT+++    +N+       +   MK  G   + + Y  +I    K
Sbjct: 285 LAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCK 344

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRLK+A    + ++  G  +D+ +YN +I   CKEG L+ A  +  +ME  G   +  T
Sbjct: 345 GGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVT 404

Query: 188 HTILIDGLCKAG-NIKGARLHLEYMNK 213
             I+I  L K   N K  +L  E + K
Sbjct: 405 FEIIIRSLFKKDENDKAEKLLHEMIAK 431



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+  +L+G CKN+  D A  +F  +++ G  P   TY  LI GLCK GRL+ A+ + +
Sbjct: 297 VVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQ 356

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +L   G   +  TY  ++    +       L I S M+  G   +   +  +I +  K  
Sbjct: 357 DLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKD 416

Query: 130 RLKEATDYMEQMVTDGV 146
              +A   + +M+  G+
Sbjct: 417 ENDKAEKLLHEMIAKGL 433


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 4/259 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NGLCK    + A  +F+ +   G+VP  V+YN LI G CK   
Sbjct: 70  MVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD 129

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ +  ++  S   PN +TYTT++    ++ K +   E+L  M +KG T +   Y  
Sbjct: 130 LVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSC 189

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+ R+ EA   +EQMVT G+   +V+YN L+N  C+  KLE A+ L   M ++ 
Sbjct: 190 LIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRR 249

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                 T+  L+  LC    + GA RL+ E + K G   +   Y+ +   L + GK+  A
Sbjct: 250 CHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK-GCPPDAITYDTLAWGLTRAGKVHEA 308

Query: 240 INVFESMEV--KDSFTYSS 256
             + E M++  ++ F  SS
Sbjct: 309 QELMEKMKLTKRNPFGRSS 327



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 149/313 (47%), Gaps = 4/313 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++  LCK +  D+AL     +   G  P+   YN ++ GLC+  ++  AR +
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++      PN +TY T++    +  + +   E+   M  KGY      Y T+I  F K
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              L  A D  ++MV      ++V+Y TLI+   K GK++AA  +LD M K+G   +  T
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDG CK   +  A   LE M   G    +  YN +++ L +  K++ A  +F  M 
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 246

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +       TY++++  LC  K+L  A +L    +  G          +  GL  +G   
Sbjct: 247 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVH 306

Query: 304 EAKKIQSKIRMAK 316
           EA+++  K+++ K
Sbjct: 307 EAQELMEKMKLTK 319



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 138/273 (50%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +L+GLC+    + A  +F  + K    P +VTYN LI GLCKA R+ TA 
Sbjct: 40  IKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAY 99

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+   G+ P  ++Y T++    + +      ++   M R     +   Y T+I   
Sbjct: 100 ELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGL 159

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+++ A + ++ MV  GV  ++ +Y+ LI+ +CK  +++ A+ LL++M  QG     
Sbjct: 160 SKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTV 219

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ IL++ LC+A  ++ A      M +      +  YN ++  L    ++D A  ++  
Sbjct: 220 VTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAE 279

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    D+ TY ++   L +A ++  A +L+
Sbjct: 280 MIAKGCPPDAITYDTLAWGLTRAGKVHEAQELM 312


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 141/277 (50%), Gaps = 4/277 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+N ++N LC       AL++F  ++ HG +    TYN +IKGLC  G 
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 423

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +++   G  P  +TY T++              +L  MK  G   D + Y  
Sbjct: 424 IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 483

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F K G+L+ A+ Y ++MV  G+  + VSY  LI+ + K+GK++ A  LL  ME+ G
Sbjct: 484 LVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMG 543

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++  +I+GL K      A    + M + G   N+  Y  ++D L ++G+   A 
Sbjct: 544 CNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAF 603

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            +F  ME    + + +TYSS+++ LC+  +   A ++
Sbjct: 604 KIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERM 640



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 155/332 (46%), Gaps = 43/332 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG       +NA R+   ++++G  P+  TYN L+ G  K G+L +A + 
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 500

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ + G  PN ++YT ++    ++ K  + L +L  M+  G   +   Y  VI    K
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSK 560

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R  EA    ++MV  G+  ++++Y TLI+  C+ G+ + A+ +  +MEK+    + YT
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 620

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK------------ 235
           ++ LI GLC+ G    A    E M++IG +  L+ Y+ +V  L + G+            
Sbjct: 621 YSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMK 676

Query: 236 -----------------------IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
                                  +DHA+ +F S+E K        Y +++  LCKA ++ 
Sbjct: 677 ERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVE 736

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            A  L  + L+      +     +VDGL   G
Sbjct: 737 EAQALFDNMLEKEWNADEIVWTVLVDGLLKEG 768



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 154/312 (49%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+ + +  LC   + + A+ +   ++K G  P + TY  LI GL + G+
Sbjct: 294 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGK 353

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++   G  PN +TY  ++       ++   L+I   M+  G   +   Y  
Sbjct: 354 LEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNE 413

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G +++A    E+M+  G    +V+YNTLIN Y  +G +  A  LLD M++ G
Sbjct: 414 IIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENG 473

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D++T+  L+ G  K G ++ A  + + M + G + N  +Y  ++D   KDGK+D A+
Sbjct: 474 CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIAL 533

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + ME      +  +Y+++++ L K  R   A K+    ++ G+         ++DGL
Sbjct: 534 SLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGL 593

Query: 297 RHSGCRREAKKI 308
             +G  + A KI
Sbjct: 594 CRNGRTQFAFKI 605



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 137/299 (45%), Gaps = 4/299 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L  L K    + A  +++ +   G  P L+T+N LI  L K G++R A  IL ++  
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
              +P+  TYT+++    RNR   L   +   M ++G   +   Y T+I      GR+ E
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 286

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A D +E+M+  G++  + +Y   I   C     E A  L+  M+K+G   +  T+T LI 
Sbjct: 287 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           GL + G ++ A      M K G   N   YN +++ L   G+   A+ +F  ME    + 
Sbjct: 347 GLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 406

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           ++ TY+ ++  LC    +  A  L    LK G          +++G    G    A ++
Sbjct: 407 NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARL 465



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 5/252 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  +++GLC+N  T  A ++F  ++K   +P L TY+ LI GLC+ G+
Sbjct: 574 MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGK 633

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A    + + + G  P   TY+T++    R  ++    +++  MK +G+  D   Y +
Sbjct: 634 ADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYS 689

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K   +  A      +   G QL +  Y  LI   CK G++E A  L D M ++ 
Sbjct: 690 LLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 749

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  D+   T+L+DGL K G +      L  M    F  N++ Y  +   L + GK   + 
Sbjct: 750 WNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESE 809

Query: 241 NVFESMEV-KDS 251
            + + ++V KDS
Sbjct: 810 PLADKLKVLKDS 821



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 145/339 (42%), Gaps = 39/339 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN ++N L K      A  +   + ++   P++ TY  LI G C+   
Sbjct: 189 MLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRN 248

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTF-- 113
           L  A  +   +   G  PN++TY+T++       +    L++L  M  KG     YT+  
Sbjct: 249 LDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTL 308

Query: 114 ----------------------------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                                       +   Y  +I+   ++G+L+ A     +M+ +G
Sbjct: 309 PITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEG 368

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  + V+YN LIN  C  G+   A  +   ME  G   +  T+  +I GLC  G+I+ A 
Sbjct: 369 LVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM 428

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
           +  E M K+G    +  YN +++     G +++A  + + M+      D +TY+ +V   
Sbjct: 429 VLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGF 488

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            K  +L SAS      ++ G+     +  A++DG    G
Sbjct: 489 SKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 4/232 (1%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D   AP       ++K C    + +   + L+ +   G+ F  +   T++    K   ++
Sbjct: 121 DRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVE 180

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM+  G+Q  ++++NTLIN+  K+GK+  A L+L ++ +     D +T+T LI
Sbjct: 181 GARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLI 240

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            G C+  N+  A    + M K G D N   Y+ +++ L  +G++D A+++ E M  K   
Sbjct: 241 LGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIE 300

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
              +TY+  +  LC  +    A +L+    K G R       A++ GL   G
Sbjct: 301 PTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 352



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
            L+E+   GF    Y+   L+  L K   ++GAR   + M   G   +L  +N +++ L 
Sbjct: 150 FLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILS 209

Query: 232 KDGKIDHA----INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
           K GK+  A      +F+     D FTY+S++   C+ + L  A  +    +K G      
Sbjct: 210 KKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSV 269

Query: 288 AQKAVVDGLRHSGCRREA 305
               +++GL + G   EA
Sbjct: 270 TYSTLINGLCNEGRVDEA 287


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++  LCKNR+ ++A+ +F  +  +G  P +VTYN L+ GLC+ GR   A W+
Sbjct: 186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWL 245

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      PN IT+T ++    +  K     E+ + M +     D F Y ++I     
Sbjct: 246 LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCM 305

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L EA      M  +G   + V Y TLI+ +CK  ++E    +  EM ++G   +  T
Sbjct: 306 YGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTIT 365

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LI G C  G    A+     M+      ++  YN ++D L  +GK++ A+ +FE M 
Sbjct: 366 YTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMR 425

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            ++      TY+ ++  +CK  ++  A  L  S    G++        ++ G    G   
Sbjct: 426 KREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIH 485

Query: 304 EAKKIQSKIR 313
           EA  +  K++
Sbjct: 486 EADSLFKKMK 495



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T NI+++ +C +     A      + K GF P+LVT+  L+ G C   R+  A 
Sbjct: 114 IPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAI 173

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TYTT+++C  +NR     +E+ + M   G   +   Y  ++   
Sbjct: 174 ALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGL 233

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +IGR  +A   +  M+   ++ +++++  LI+ + K GKL  A  L + M +     D 
Sbjct: 234 CEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDV 293

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LI+GLC  G +  AR     M + G   N   Y  ++    K  +++  + +F  
Sbjct: 294 FTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYE 353

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     V ++ TY+ ++   C   R   A ++ 
Sbjct: 354 MSQKGVVANTITYTVLIQGYCLVGRPDVAQEVF 386



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 124/254 (48%), Gaps = 1/254 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF  +++   K      A  ++  + +    P++ TY  LI GLC  G L  AR
Sbjct: 254 IEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEAR 313

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +  +G  PN + YTT++    ++++ + G++I   M +KG   +   Y  +I  +
Sbjct: 314 QMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGY 373

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +GR   A +   QM +     DI +YN L++  C  GK+E A ++ + M K+  + + 
Sbjct: 374 CLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINI 433

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+TI+I G+CK G ++ A      +   G   N+  Y  ++    + G I  A ++F+ 
Sbjct: 434 VTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKK 493

Query: 246 MEVKDSFTYSSMVH 259
           M+ +D F  +  V+
Sbjct: 494 MK-EDGFLPNESVY 506



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 8/281 (2%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P    F  +L+ + K NRY D  + +F  +Q  G  P L T NI++  +C + +   A  
Sbjct: 81  PSIIDFTRLLSVIAKMNRY-DVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASC 139

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            L ++   G  P+ +T+T+++   C  NR  +  + +   +   G+  +   Y T+I   
Sbjct: 140 FLGKMMKLGFEPDLVTFTSLLNGYCHWNR-IEDAIALFDQILGMGFKPNVVTYTTLIRCL 198

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   L  A +   QM T+G + ++V+YN L+   C+ G+   A  LL +M K+  E + 
Sbjct: 199 CKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNV 258

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T T LID   K G +  A+     M ++    ++  Y  +++ L   G +D A  +F  
Sbjct: 259 ITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYL 318

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ME      +   Y++++H  CK+KR+    K+     + GV
Sbjct: 319 MERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGV 359



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 4/231 (1%)

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           +Y  I++    N ++   L++ + M           +  +++   K+ R        EQM
Sbjct: 50  SYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQM 109

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
              G+   + + N +++  C   +   A   L +M K GFE D  T T L++G C    I
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRI 169

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSM 257
           + A    + +  +GF  N+  Y  ++  L K+  ++HA+ +F  M    S     TY+++
Sbjct: 170 EDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNAL 229

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           V  LC+  R   A+ LL   +K  +        A++D     G   EAK++
Sbjct: 230 VTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKEL 280


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 147/289 (50%), Gaps = 14/289 (4%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           A+FN +L+ LCK++  + A  +FR L+   F  + VTYN+++ G C   R      +LKE
Sbjct: 156 ASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKTLEVLKE 214

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + + G  PN  TY T++K  FR  + +   E    MK++    D   Y TV+  F   G 
Sbjct: 215 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 274

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +K A +  ++M+ +GV   + +YN +I + CK+  +E A ++ +EM ++G+E +  T+ +
Sbjct: 275 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 334

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           LI GL  AG        ++ M   G + N + YN ++    +  +++ A+ +FE M   D
Sbjct: 335 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 394

Query: 251 SF----TYSSMVHNLCKAKRLPS---------ASKLLLSCLKSGVRILK 286
                 TY+ ++  +   KR            A ++L    KSG R+L+
Sbjct: 395 CLPNLDTYNILISGMFVRKRSEDMVVAGNQAFAKEILRLQSKSGSRLLR 443



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ML G  +     +A   F  ++K     ++VTY  ++ G   AG 
Sbjct: 215 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 274

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ AR +  E+   G  P+  TY  +++   +    +  + +   M R+GY  +   Y  
Sbjct: 275 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 334

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G      + M++M  +G + +  +YN +I  Y +  ++E A  L ++M    
Sbjct: 335 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 394

Query: 181 FECDKYTHTILIDGL 195
              +  T+ ILI G+
Sbjct: 395 CLPNLDTYNILISGM 409



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 35/130 (26%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY------------ 48
           MI   + P  AT+N M+  LCK    +NA+ MF  + + G+ P + TY            
Sbjct: 285 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 344

Query: 49  -----------------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                                  N++I+   +   +  A  + +++G     PN  TY  
Sbjct: 345 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNI 404

Query: 86  IMKCCFRNRK 95
           ++   F  ++
Sbjct: 405 LISGMFVRKR 414


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 7/281 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   ++NI++NG       D A  +F  +   G  P++VTYN +I GLCKA  +  A  
Sbjct: 190 SPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAED 246

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +++ + G  PN +TY TI+    + ++  +   +   M  KG       Y T+I    
Sbjct: 247 VFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLC 306

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K   +  A    +QM+  GV+ D V+YNT+I+  CK   ++ A  +  +M  +G + D  
Sbjct: 307 KAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNL 366

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+TI+IDGLCKA ++  A    + M   G   N   YNC++      G+ +  +   + M
Sbjct: 367 TYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEM 426

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                  D FTY  ++  LCK  +   A  L  S ++ G++
Sbjct: 427 SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIK 467



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P    FN ++    K    D  + +F  +++ G  P +VTY  LI  LCK GR
Sbjct: 496 MVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGR 555

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     ++ + G  PN + + +++       K++   E+   M  +G   D   + T
Sbjct: 556 VDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNT 615

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+    K GR+ EA   ++ MV  G++ D++SYNTLI+ +C   +++ A  LLD M   G
Sbjct: 616 VLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + +  ++  L+ G CKAG I  A      M + G    +E YN I++ L + G+   A 
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              +N+ +S ++    TYS ++   CK      A K+  S     +++       ++DGL
Sbjct: 736 ELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGL 795

Query: 297 RHSGCRREAKKIQSKI 312
              G + +A  + + I
Sbjct: 796 FKGGRKEDAMDLFAAI 811



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 19/304 (6%)

Query: 14  NIMLNGLCKNRYTDNALR-MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL- 71
           N +L GLC  +    A+  + R + + G    +V+YN L+KGLC   R   AR +L  + 
Sbjct: 123 NQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMV 182

Query: 72  --GDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              DS  +P+ ++Y  ++   F     ++ Y L LE+       G + D   Y T+I   
Sbjct: 183 DGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM-------GVSPDVVTYNTIIDGL 235

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   +  A D  +QMV  GV+ + V+YNT+I+  CK  +++ A  +  +M  +G +   
Sbjct: 236 CKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSN 295

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +IDGLCKA  +  A    + M   G   +   YN I+D L K   ID A  VF+ 
Sbjct: 296 VTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQ 355

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D+ TY+ ++  LCKA+ +  A  +    +  GV+        ++ G   +G 
Sbjct: 356 MIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQ 415

Query: 302 RREA 305
             E 
Sbjct: 416 WEEV 419



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++GLCK +  D A  +F+ +   G  P+ VTYN +I GLCKA  
Sbjct: 286 MVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQA 345

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +++ D G  P+ +TYT I+    + +       +   M  KG   +   Y  
Sbjct: 346 IDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNC 405

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  ++  G+ +E    +++M    ++ D+ +Y  L++  CK GK   A  L D M ++G
Sbjct: 406 LIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKG 465

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +     + I++ G  K G +      L  M   G   N   +N ++    K   ID  +
Sbjct: 466 IKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVM 525

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M+ +    +  TY +++  LCK  R+  A       +  GV        ++V GL
Sbjct: 526 HIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGL 585



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 130/287 (45%), Gaps = 4/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N +++GLCK +  D A  +F+ +   G  P+ +TY I+I GLCKA  
Sbjct: 321 MIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQS 380

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +++ D G  PN  TY  ++       +++  ++ +  M       D F Y  
Sbjct: 381 VDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGL 440

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+  EA    + M+  G++  +  Y  +++ Y K+G L   + LL+ M   G
Sbjct: 441 LLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANG 500

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +      +I    K   I         M + G   N+  Y  ++D L K G++D A+
Sbjct: 501 ISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAV 560

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             F  M       ++  ++S+V+ LC   +     +L L  L  G+R
Sbjct: 561 LQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIR 607



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 144/299 (48%), Gaps = 11/299 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++I++   C+    +     F  + K G+  + +  N L+KGLC   R+  A 
Sbjct: 80  VAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAM 139

Query: 66  WI-LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM---KRKGYTFDGFGYCTV 121
            + L+++ + G     ++Y T++K     R+ +   E+L  M   +    + D   Y  V
Sbjct: 140 HVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIV 199

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F   G++ +A     +M   GV  D+V+YNT+I+  CK  +++ A  +  +M ++G 
Sbjct: 200 INGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGV 256

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           + +  T+  +IDGLCKA  +  A    + M   G   +   YN I+D L K   +D A  
Sbjct: 257 KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEG 316

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           VF+ M  +    D  TY++++  LCKA+ +  A  +    +  GV+        ++DGL
Sbjct: 317 VFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGL 375



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 112/239 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C  L P   ++N +++G C     D A+++  G+   G  P +V+YN L+ G CKAGR
Sbjct: 636 MVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGR 695

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +E+   G  P   TY TI+   FR+ ++    E+   M +    +    Y  
Sbjct: 696 IDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSI 755

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F K     EA    + + +  +QLDI+++N +I+   K G+ E A  L   +   G
Sbjct: 756 ILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANG 815

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                 T+ ++ + L + G+++        M K G   N    N ++ +L   G+I  A
Sbjct: 816 LVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRA 874



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 138/294 (46%), Gaps = 25/294 (8%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKA-----GRLRTARW--ILKELGDSGHAPNA 80
           +AL++F  L  H     +   N L+  + +A      +L  +R+  +L++  +   AP+ 
Sbjct: 26  DALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNK-VAPDC 84

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM-E 139
            TY+ ++ C  R  + +LG      + + G+  D      ++       R+ EA   +  
Sbjct: 85  CTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLR 144

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFEC--DKYTHTILIDGLC 196
           QM   G +L +VSYNTL+   C   + E A  LL  M + Q   C  D  ++ I+I+G  
Sbjct: 145 QMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFF 204

Query: 197 KAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
             G + K   L LE    +G   ++  YN I+D L K  ++D A +VF+ M  K    ++
Sbjct: 205 NEGQVDKAYSLFLE----MGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNN 260

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            TY++++  LCKA+ +  A  +    +  GV+        ++DGL    C+ +A
Sbjct: 261 VTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGL----CKAQA 310



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 107/244 (43%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   ++N +L+G CK    DNA  +FR + + G  P + TYN ++ GL ++GR
Sbjct: 671 MVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGR 730

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR +   +  S    +  TY+ I+    +N  +    +I  ++       D   +  
Sbjct: 731 FSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNI 790

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR ++A D    +  +G+   +V+Y  +     +EG LE    L   MEK G
Sbjct: 791 MIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSG 850

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +    LI  L   G I  A  +L  +++  F       + ++    ++    HA 
Sbjct: 851 TAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHAK 910

Query: 241 NVFE 244
           ++ E
Sbjct: 911 SLPE 914


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 124/242 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAH 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  PN +T+TT++    +N K  L +EI   +  +G + D   Y T+I  F
Sbjct: 227 ELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGF 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+  D +++M   G++ D ++Y TLI+  CKEG LE A+    +M ++    D 
Sbjct: 287 CKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLCK G    A   L  M  +G   +   Y  +++   K+G ++    + + 
Sbjct: 347 VVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 142/277 (51%), Gaps = 12/277 (4%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N L+ G  K G L     +   + 
Sbjct: 139 FNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMH 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K G+L 
Sbjct: 199 ASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +Q+++ G+  D+++YNTLI  +CK+G L+    L+DEM  +G + DK T+T LI
Sbjct: 259 LAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLE----AYNCIVDRLGKDGK-IDHAINVFESME 247
           DG CK G+++ A    EY  K+  + N+      Y  ++  L K+G+ +D    + E + 
Sbjct: 319 DGSCKEGDLETA---FEYRKKM-IEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLS 374

Query: 248 V---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           V    DS TY+ +++  CK   + + SKLL    + G
Sbjct: 375 VGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDG 411



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 111/208 (53%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+++++NGLCK    D A  +F  + + G VP  VT+  LI G CK G+L  A  I
Sbjct: 204 PDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEI 263

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++   G +P+ ITY T++    +    K   +++  M  KG   D   Y T+I    K
Sbjct: 264 YKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A +Y ++M+ + ++LD V Y  LI+  CKEG+   A  +L EM   G + D  T
Sbjct: 324 EGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGT 383

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +TI+++  CK G++      L+ M + G
Sbjct: 384 YTIVMNEFCKNGDVNTGSKLLKEMQRDG 411



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 39/297 (13%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L+ L K +Y       ++ + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 VLDHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M                                     ++K+G L E  
Sbjct: 167 LKPSVVSFNTLMN-----------------------------------GYIKMGILDEGF 191

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
                M   G Q D+ +Y+ LIN  CKE K++ A+ L DEM ++G   +  T T LIDG 
Sbjct: 192 RLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGH 251

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G +  A    + +   G   +L  YN ++    K G +    ++ + M +K    D 
Sbjct: 252 CKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDK 311

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            TY++++   CK   L +A +     ++  +R+      A++ GL   G   +A+K+
Sbjct: 312 ITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKM 368



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 9/219 (4%)

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           GY    + +  ++  F K G ++ A    + +   G++  +VS+NTL+N Y K G L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEG 190

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           + L + M   G + D YT+++LI+GLCK   +  A    + M + G   N   +  ++D 
Sbjct: 191 FRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDG 250

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K+GK+D A+ +++ +  +    D  TY+++++  CK   L     L+      G++  
Sbjct: 251 HCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPD 310

Query: 286 KSAQKAVVDGLRHSGCRREA-----KKIQSKIRMAKISH 319
           K     ++DG    G    A     K I+  IR+  + +
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVY 349



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK    + A    + + +     + V Y  LI GLCK GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAE 366

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
            +L+E+   G  P++ TYT +M    +N     G ++L  M+R G+
Sbjct: 367 KMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGH 412



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLCK   + +A +M R +   G  P+  TY I++   CK G + T   +LKE
Sbjct: 347 VVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GH P+ +T
Sbjct: 407 MQRDGHVPSVVT 418


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 138/261 (52%), Gaps = 4/261 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N ++ GLC       AL     +   GF  + V+Y  LI GLCKAG  +    +
Sbjct: 129 PNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARL 188

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L++L      P+ + YTTI+ C  +N+      ++ S M  KG + + F Y T+I  F  
Sbjct: 189 LRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCI 248

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G LKEA   + +M    +  D+ ++N LI+   KEGK++ A  L +EM+ +    +  T
Sbjct: 249 MGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVT 308

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LIDGLCK  +++ A    + M + G   N+ +Y  ++D L K G++++A   F+ + 
Sbjct: 309 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLL 368

Query: 248 VK----DSFTYSSMVHNLCKA 264
           VK    +  TY+ M++ LCKA
Sbjct: 369 VKGYHLNVRTYNVMINGLCKA 389



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 148/306 (48%), Gaps = 6/306 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T  FN +L+ L KN+     + +F+  + +G  P+L T +ILI   C    +  A  
Sbjct: 58  PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFS 117

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +   +   G+ PNAIT  T++K  CF   + K  L     +  +G+  D   Y T+I   
Sbjct: 118 VFANILKRGYHPNAITLNTLIKGLCFCG-EIKRALHFHDKVVAQGFQLDQVSYGTLINGL 176

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  K     + ++    V+ D+V Y T+I+  CK   L  A  L  EM  +G   + 
Sbjct: 177 CKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNV 236

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+T LI G C  GN+K A   L  M     + ++  +N ++D L K+GKID A+++FE 
Sbjct: 237 FTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEE 296

Query: 246 MEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ K+ F    TY+S++  LCK   L  A  L     + G++    +   ++D L   G 
Sbjct: 297 MKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGR 356

Query: 302 RREAKK 307
              AK+
Sbjct: 357 LENAKQ 362



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 8/278 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++NGLCK   T    R+ R L+ H   P+LV Y  +I  LCK   L  A  +  E
Sbjct: 167 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSE 226

Query: 71  LGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           +   G +PN  TYTT++   C   N K    L  L+ MK K    D + +  +I A  K 
Sbjct: 227 MIVKGISPNVFTYTTLIHGFCIMGNLKEAFSL--LNEMKLKNINPDVYTFNILIDALAKE 284

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G++ EA    E+M    +  +IV+Y +LI+  CK   LE A  L  +M++QG + + Y++
Sbjct: 285 GKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSY 344

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           TIL+D LCK G ++ A+   +++   G+  N+  YN +++ L K G     +++   ME 
Sbjct: 345 TILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEG 404

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              + ++ T+ +++  L +      A K L   +  G+
Sbjct: 405 KGCMPNAITFKTIICALLEKDENDKAEKFLREMIARGL 442



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 88/180 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T+  +++G C       A  +   ++     P++ T+NILI  L K G+
Sbjct: 227 MIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGK 286

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +E+      PN +TYT+++    +N   +  + +   MK +G   + + Y  
Sbjct: 287 IDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTI 346

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K GRL+ A  + + ++  G  L++ +YN +IN  CK G       L  +ME +G
Sbjct: 347 LLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKG 406



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 10/210 (4%)

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           F +  ++++ VK  R        +Q   +G+  D+ + + LIN +C    +  A+ +   
Sbjct: 62  FLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSVFAN 121

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGK 232
           + K+G+  +  T   LI GLC  G IK A   L + +K+   GF  +  +Y  +++ L K
Sbjct: 122 ILKRGYHPNAITLNTLIKGLCFCGEIKRA---LHFHDKVVAQGFQLDQVSYGTLINGLCK 178

Query: 233 DGKIDHAINVFESME---VK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
            G+      +   +E   VK D   Y++++H LCK K L  A  L    +  G+      
Sbjct: 179 AGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFT 238

Query: 289 QKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
              ++ G    G  +EA  + +++++  I+
Sbjct: 239 YTTLIHGFCIMGNLKEAFSLLNEMKLKNIN 268


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 159/344 (46%), Gaps = 39/344 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN ++NG CK  +  +A ++   ++K    P + TYN L++GLC+  +   A 
Sbjct: 343 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 402

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ + D+G  P+ +TY  ++    +  +  +   I ++M   G   DGF +  +I   
Sbjct: 403 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGL 462

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG--------------------- 164
            K+GRL++A   +  MV  G+ LD V++  LI+ +CK G                     
Sbjct: 463 CKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTA 522

Query: 165 --------------KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                         KL  A  +L +M K G      THTILI+G C+AG    +   LE 
Sbjct: 523 HTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLER 582

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M + G   N+  Y  I++ L  +G+++ A  +  SM       + FTY+ +V    KA R
Sbjct: 583 MKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGR 642

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           L  A +++ + +K+G +       A++ G   S     A+ + S
Sbjct: 643 LDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSS 686



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 148/307 (48%), Gaps = 6/307 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ I+++ LC+    + A  +FR + KHG  P ++T+N LI G CK G + +A  
Sbjct: 309 VPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQ 368

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +L  +      PN  TY  +M+  C  ++ YK  L +L  +   G   D   Y  ++  F
Sbjct: 369 LLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL-LLRRVVDNGLLPDRVTYNILVDGF 427

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L  A +    M + G++ D  ++  LI+  CK G+LE A  +L  M K+G   D+
Sbjct: 428 CKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDE 487

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T T LIDG CK G  K      E M +    +    +NC +D LGKD K++ A  +   
Sbjct: 488 VTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGK 547

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V    T++ ++   C+A     + K+L    ++G          +++GL ++G 
Sbjct: 548 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 607

Query: 302 RREAKKI 308
             EA+ I
Sbjct: 608 VEEAETI 614



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 127/283 (44%), Gaps = 40/283 (14%)

Query: 21  CKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           C+      A R+F  + K     P  VTY+ILI GLC+AGRL  A  + +E+ + G  P+
Sbjct: 217 CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 276

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
             TYT ++K           +++L  M  K    +   Y  +I    + G+++EA     
Sbjct: 277 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 336

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--------------------- 178
           +M+  G+   I+++N LIN YCKEG + +A+ LL  MEK                     
Sbjct: 337 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 396

Query: 179 --------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
                          G   D+ T+ IL+DG CK G +  A      MN  G + +   + 
Sbjct: 397 KSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFT 456

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
            ++D L K G+++ A  +  SM  K    D  T+++++   CK
Sbjct: 457 ALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCK 499



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 153/363 (42%), Gaps = 78/363 (21%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC +T   +L  L K      A  ++R +   GFV   + Y  ++  LCK G ++ A   
Sbjct: 137 PCYST---LLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMF 193

Query: 68  ---LKELG-------------------DSGHA--------------PNAITYTTIMK--- 88
              +  LG                   D G A              PN++TY+ ++    
Sbjct: 194 CCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLC 253

Query: 89  -------------------CCFRNRKYKL-------------GLEILSAMKRKGYTFDGF 116
                              C    R Y +              +++L  M  K    +  
Sbjct: 254 EAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVH 313

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  +I    + G+++EA     +M+  G+   I+++N LIN YCKEG + +A+ LL  M
Sbjct: 314 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 373

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           EK   + +  T+  L++GLC+      A L L  +   G   +   YN +VD   K+G++
Sbjct: 374 EKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQL 433

Query: 237 DHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           + A N+F SM       D FT+++++  LCK  RL  A+ +L S +K G+ + +    A+
Sbjct: 434 NMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTAL 493

Query: 293 VDG 295
           +DG
Sbjct: 494 IDG 496



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 145/306 (47%), Gaps = 6/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN  L+ L K+   + A  M   + K+G VP +VT+ ILI+G C+AG    +  +L+ +
Sbjct: 524 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 583

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G +PN  TYT I+     N + +    IL +M   G + + F Y  ++ A VK GRL
Sbjct: 584 KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 643

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL--LDEMEKQGFECDKYTHT 189
             A   +  MV +G Q +   Y+ L++ +        A  L    +++ +    ++  + 
Sbjct: 644 DRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNN 703

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            L   + +  ++  A    + + K G  +  + YN +V  L K+G+I  A  + + M   
Sbjct: 704 CLSSHVFRLMDVDHALKIRDEIKKCGVPTE-DLYNFLVVGLCKEGRIIEADQLTQDMVKH 762

Query: 250 DSF---TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
             F     SS++ + CK  +  +  + +   L +      ++   V+ GLR+ G  +EA+
Sbjct: 763 GLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQ 822

Query: 307 KIQSKI 312
           K+ S +
Sbjct: 823 KLVSDL 828



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 130/277 (46%), Gaps = 5/277 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            TF  +++G CK     +   +F  + ++  +    T+N  +  L K  +L  A  +L +
Sbjct: 488 VTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGK 547

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+ +T+T +++   R  +  L L++L  MK+ G + + + Y  +I      GR
Sbjct: 548 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 607

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA   +  M + GV  +  +Y  L+  + K G+L+ A+ ++  M K G + + + ++ 
Sbjct: 608 VEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSA 667

Query: 191 LIDGLCKAGNIKGARLHLEY--MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           L+ G   +    GAR       ++     S     NC+   + +   +DHA+ + + ++ 
Sbjct: 668 LLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKK 727

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             V     Y+ +V  LCK  R+  A +L    +K G+
Sbjct: 728 CGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGL 764



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 87/220 (39%), Gaps = 40/220 (18%)

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  M   G+      Y T++    K+     A     +MV +G  L  + Y T++N  CK
Sbjct: 124 LDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCK 183

Query: 163 EGKLEAAYLLLDEMEKQGFECDKY------------------------------------ 186
            G ++AA +   ++ + GF  D +                                    
Sbjct: 184 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSV 243

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ILI GLC+AG ++ A    + M + G   +   Y  ++      G  D A+ + + M
Sbjct: 244 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 303

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             K    +  TY+ ++  LC+  ++  A+ +    LK G+
Sbjct: 304 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 343


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 4/259 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NGLCK    + A  +F+ +   G+VP  V+YN LI G CK   
Sbjct: 175 MVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD 234

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ +  ++  S   PN +TYTT++    ++ K +   E+L  M +KG T +   Y  
Sbjct: 235 LVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSC 294

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+ R+ EA   +EQMVT G+   +V+YN L+N  C+  KLE A+ L   M ++ 
Sbjct: 295 LIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRR 354

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                 T+  L+  LC    + GA RL+ E + K G   +   Y+ +   L + GK+  A
Sbjct: 355 CHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK-GCPPDAITYDTLAWGLTRAGKVHEA 413

Query: 240 INVFESMEV--KDSFTYSS 256
             + E M++  ++ F  SS
Sbjct: 414 QELMEKMKLTKRNPFGRSS 432



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 149/313 (47%), Gaps = 4/313 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++  LCK +  D+AL     +   G  P+   YN ++ GLC+  ++  AR +
Sbjct: 112 PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 171

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++      PN +TY T++    +  + +   E+   M  KGY      Y T+I  F K
Sbjct: 172 FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 231

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              L  A D  ++MV      ++V+Y TLI+   K GK++AA  +LD M K+G   +  T
Sbjct: 232 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 291

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDG CK   +  A   LE M   G    +  YN +++ L +  K++ A  +F  M 
Sbjct: 292 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 351

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +       TY++++  LC  K+L  A +L    +  G          +  GL  +G   
Sbjct: 352 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVH 411

Query: 304 EAKKIQSKIRMAK 316
           EA+++  K+++ K
Sbjct: 412 EAQELMEKMKLTK 424



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 138/273 (50%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +L+GLC+    + A  +F  + K    P +VTYN LI GLCKA R+ TA 
Sbjct: 145 IKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAY 204

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+   G+ P  ++Y T++    + +      ++   M R     +   Y T+I   
Sbjct: 205 ELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGL 264

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+++ A + ++ MV  GV  ++ +Y+ LI+ +CK  +++ A+ LL++M  QG     
Sbjct: 265 SKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTV 324

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ IL++ LC+A  ++ A      M +      +  YN ++  L    ++D A  ++  
Sbjct: 325 VTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAE 384

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    D+ TY ++   L +A ++  A +L+
Sbjct: 385 MIAKGCPPDAITYDTLAWGLTRAGKVHEAQELM 417



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 143/316 (45%), Gaps = 40/316 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG------ 59
           + P  ATFN + +G  K    +    +++G+ + G+      Y ILI  LCK G      
Sbjct: 6   VIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAY 65

Query: 60  -----------------------------RLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                                        R+  AR +++++      P+A+TY  I++  
Sbjct: 66  KLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVERL 124

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            + ++    L  +  M  +G   D F Y  V++   +  +++EA    E+MV   +  ++
Sbjct: 125 CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNV 184

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V+YNTLIN  CK  ++E AY L  EM  +G+   + ++  LIDG CK  ++  A+   + 
Sbjct: 185 VTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDK 244

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M +     N+  Y  ++D L K GK+  A  V + M  K    +  TYS ++   CK +R
Sbjct: 245 MVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRR 304

Query: 267 LPSASKLLLSCLKSGV 282
           +  A KLL   +  G+
Sbjct: 305 VDEAHKLLEQMVTQGI 320



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 132/271 (48%), Gaps = 5/271 (1%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
           +P   T+N +  G  KAGRL   + + + + ++G+   A  Y  ++ C  +   +    +
Sbjct: 7   IPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYK 66

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +L  M+ K +      Y T+I    K+ R++EA + +E+M       D ++Y  ++   C
Sbjct: 67  LLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPP-DALTYGPIVERLC 125

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K  +++ A   ++EM  +G + D + +  ++ GLC+   ++ ARL  E M K   + N+ 
Sbjct: 126 KTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV 185

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            YN +++ L K  +I+ A  +F+ M     V    +Y++++   CK K L +A  +    
Sbjct: 186 TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKM 245

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           ++S           ++DGL  SG  + A ++
Sbjct: 246 VRSNCVPNVVTYTTLIDGLSKSGKVQAAAEV 276



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 3/170 (1%)

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           ++NT+ + + K G+LE    +   M + G+      + ILI  LCK GN   A   L  M
Sbjct: 12  TFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTM 71

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSMVHNLCKAKRLP 268
               F     AY+ I++ L K  +++ A  + E M      D+ TY  +V  LCK KR+ 
Sbjct: 72  RLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRID 131

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A   +      G++        V+ GL       EA+ +  K+   +I+
Sbjct: 132 DALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRIN 181


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 1/250 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D V+Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKE 406

Query: 246 MEVKDSFTYS 255
           M+ +D +  S
Sbjct: 407 MQ-RDGYVPS 415



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      ++ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 412



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+   CK G ++ A+ +   +   G  P A+++ T+M    R      G
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++  A +   +M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   ++KE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYVPSVVT 418


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 148/274 (54%), Gaps = 10/274 (3%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKH--GFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            N++L G C++   D A+ +F  ++++    VP+ VTYN L+ G CKA RL  AR + + 
Sbjct: 115 LNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEA 174

Query: 71  LGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +   G   PN +TY+ ++ C  ++ +   GL +L  M+R+G   D F Y ++I+AF   G
Sbjct: 175 MKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEG 234

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++   +  ++M+   V  ++V+Y+ L+    + G+   A  +L +M  +G   D   +T
Sbjct: 235 DIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYT 294

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           +L DGLCK G    A   L+ M + G +     YN +V+ L K+ ++D A  V E M  K
Sbjct: 295 VLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKK 354

Query: 250 ----DSFTYSSMVHNLCKAKRLPSAS---KLLLS 276
               D+ TY++++  LC A ++  A    KLLLS
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLS 388



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 147/285 (51%), Gaps = 7/285 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTA 64
           + P   T+N ++NG CK +    A  +F  ++K G   P LVTY++LI   CK+G +   
Sbjct: 145 VVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEG 204

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+E+   G   +   Y++++         + G E+   M R+  + +   Y  ++  
Sbjct: 205 LGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQG 264

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + GR +EA++ ++ M   GV+ D+V+Y  L +  CK G+   A  +LD M ++G E  
Sbjct: 265 LGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPG 324

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF- 243
             T+ ++++GLCK   +  A   +E M K G   +   YN ++  L   GKI  A++++ 
Sbjct: 325 TLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWK 384

Query: 244 ----ESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
               E   VK D FT ++++  LCK  R+  A+++  S ++ G++
Sbjct: 385 LLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQ 429



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 154/352 (43%), Gaps = 43/352 (12%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   T++++++  CK+      L +   +++ G   ++  Y+ LI   C  G + T
Sbjct: 179 GDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIET 238

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            R +  E+     +PN +TY+ +M+   R  +++   E+L  M  +G   D   Y  +  
Sbjct: 239 GRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLAD 298

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  +A   ++ MV  G +   ++YN ++N  CKE +++ A+ +++ M K+G + 
Sbjct: 299 GLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKP 358

Query: 184 DKYTHTILIDGLCKAGNI--------------------------------------KGAR 205
           D  T+  L+ GLC AG I                                        AR
Sbjct: 359 DAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAAR 418

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF----ESMEVKDSFTYSSMVHNL 261
           +H   M ++G   N+  YN +++      K+  A+ ++    ES    +S TYS M++ L
Sbjct: 419 IH-SSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGL 477

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           CK + L  A  L      SG+R       A++  L       +A+ +  ++R
Sbjct: 478 CKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMR 529



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 37/276 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC----------- 56
           P T T+N+++NGLCK    D+A  +   + K G  P+ VTYN L+KGLC           
Sbjct: 323 PGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDL 382

Query: 57  --------------------------KAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                                     K GR+  A  I   + + G   N +TY  +++  
Sbjct: 383 WKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGY 442

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
              RK    L++       G++ +   Y  +I    K+  L  A     +M   G++  +
Sbjct: 443 LAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTV 502

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           + YN L+   C+E  LE A  L  EM       D  +  I+IDG  KAG++K A+  L  
Sbjct: 503 IDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSE 562

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           M  +    +   ++ +++R  K G +D A+ ++E M
Sbjct: 563 MFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKM 598



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 144/317 (45%), Gaps = 10/317 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T++ ++ GL +      A  M + +   G  P++V Y +L  GLCK GR   A 
Sbjct: 251 VSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAI 310

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +   G  P  +TY  ++    +  +      ++  M +KG   D   Y T++   
Sbjct: 311 KVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGL 370

Query: 126 VKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              G++ EA D  + ++++   V+ D+ + N LI   CKEG++  A  +   M + G + 
Sbjct: 371 CGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQG 430

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+  LI+G   A  +  A    +Y  + GF  N   Y+ +++ L K   +  A  +F
Sbjct: 431 NIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLF 490

Query: 244 ESMEVKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
             M  KDS        Y++++ +LC+   L  A  L          +   +   ++DG  
Sbjct: 491 CKM--KDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTL 548

Query: 298 HSGCRREAKKIQSKIRM 314
            +G  + AK++ S++ M
Sbjct: 549 KAGDVKSAKELLSEMFM 565



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P + T+++M+NGLCK +    A  +F  ++  G  P ++ YN L+  LC+   L  AR
Sbjct: 463 FSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQAR 522

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ +  H  + +++  I+    +    K   E+LS M       D   +  +I  F
Sbjct: 523 SLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRF 582

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD- 184
            K+G L EA    E+MV+ G    +V +++L+  Y  +G+ E    LL +M  +    D 
Sbjct: 583 SKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDS 642

Query: 185 KYTHTIL 191
           K T TIL
Sbjct: 643 KLTSTIL 649



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 42/231 (18%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I    K  +         +MV+  V     S + L   +        A+ +L  M K+
Sbjct: 47  TLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKR 106

Query: 180 GFECDKYTHTILIDGLCKAGN-------------------------------------IK 202
           GF  + Y   +++ G C++G                                      + 
Sbjct: 107 GFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLA 166

Query: 203 GARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSM 257
            AR+  E M K G    NL  Y+ ++D   K G++   + + E ME +    D F YSS+
Sbjct: 167 EARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSL 226

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +   C    + +  +L    L+  V         ++ GL  +G  REA ++
Sbjct: 227 ISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEM 277



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   DL P   TF+I++N   K    D A+ ++  +   G VP +V ++ L+KG    G 
Sbjct: 563 MFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGE 622

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC-CFRNR 94
                 +L ++ D     ++   +TI+ C C  +R
Sbjct: 623 TEKIISLLHQMADKDVVLDSKLTSTILACLCHMSR 657


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 4/306 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ I+++G C     +NA+++   +   G  P    Y  ++  LC  GR+  A  
Sbjct: 291 PPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALT 350

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++++       +   YTT++                  M+RKG   DG  Y T+I    
Sbjct: 351 VVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLC 410

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G LKEA   +++M+   + +D V+Y  L++ YCK GK+  A+ + + M ++G   +  
Sbjct: 411 RAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVV 470

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L DGLCK G+++ A   L  M+  G + N   YN +++ L K G +D A+     M
Sbjct: 471 TYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADM 530

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +      D +TY++++  LCK+  L  A  LL   L +G++        +++G   SG  
Sbjct: 531 DAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRV 590

Query: 303 REAKKI 308
              KK+
Sbjct: 591 EGGKKL 596



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +  ++  LC      +AL +   +  H  + +   Y  ++ G C  G 
Sbjct: 320 MVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGD 379

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +AR    E+   G A + +TYTT++    R  + K   ++L  M  +    D   Y  
Sbjct: 380 LVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTV 439

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + K G++ EA      MV  GV  ++V+Y  L +  CK+G ++AA  LL EM  +G
Sbjct: 440 LVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG 499

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+  LI+GLCKAG +  A   +  M+  G   ++  Y  ++D L K G++D A 
Sbjct: 500 LELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAH 559

Query: 241 NVFESM---EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++ + M    +K +  TY+ +++  C + R+    KLL   L+  +
Sbjct: 560 DLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNI 605



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 154/314 (49%), Gaps = 15/314 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P     N +L+ L      D A+ +F+GL        + +YNIL+K LC AGR+  AR
Sbjct: 231 ISPSPEACNAVLSRLP----LDEAIELFQGLPDKN----VCSYNILLKVLCGAGRVEDAR 282

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+      P+ +TY  ++       + +  +++L  M  +G   +   Y +V+A  
Sbjct: 283 QLFDEMASP---PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALL 339

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR+ +A   +E MV   V LD   Y T+++ +C +G L +A    DEM+++G   D 
Sbjct: 340 CDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDG 399

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI+GLC+AG +K A   L+ M     D +   Y  +VD   K GK+  A  V  +
Sbjct: 400 VTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNT 459

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       +  TY+++   LCK   + +A++LL      G+ +      ++++GL  +G 
Sbjct: 460 MVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGY 519

Query: 302 RREAKKIQSKIRMA 315
             +A +  + +  A
Sbjct: 520 LDQAMRTMADMDAA 533



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 145/306 (47%), Gaps = 4/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++NGLC+      A ++ + +       + VTY +L+ G CK G++  A  +   +
Sbjct: 401 TYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTM 460

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G APN +TYT +     +    +   E+L  M  KG   +   Y ++I    K G L
Sbjct: 461 VQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL 520

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A   M  M   G++ D+ +Y TLI+  CK G+L+ A+ LL EM   G +    T+ +L
Sbjct: 521 DQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVL 580

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           ++G C +G ++G +  LE+M +     N   YN ++ +      +     +++ M  +  
Sbjct: 581 MNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNV 640

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             +  TY+ ++   CKA+ +  A       ++ G R+  S+  A++  L       EA+K
Sbjct: 641 EPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARK 700

Query: 308 IQSKIR 313
           +   +R
Sbjct: 701 LFHDMR 706



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 6/275 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ ++++G CK      A ++   + + G  P +VTY  L  GLCK G ++ A  +L E+
Sbjct: 436 TYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEM 495

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G   NA TY +++    +       +  ++ M   G   D + Y T+I A  K G L
Sbjct: 496 SNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGEL 555

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A D +++M+ +G++  IV+YN L+N +C  G++E    LL+ M ++    +  T+  L
Sbjct: 556 DRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSL 615

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD-----RLGKDGKIDHAINVFESM 246
           +   C   N+K      + M     + N   YN ++      R  K+ +  H   + +  
Sbjct: 616 MKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGF 675

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +  S +YS+++  L K K+   A KL     K G
Sbjct: 676 RLTAS-SYSALIRLLNKKKKFVEARKLFHDMRKEG 709



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 107/217 (49%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++NGLCK  Y D A+R    +   G  P++ TY  LI  LCK+G L  A  +L+E+
Sbjct: 506 TYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEM 565

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D+G  P  +TY  +M     + + + G ++L  M  K    +   Y +++  +     +
Sbjct: 566 LDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNM 625

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           K  T+  + M +  V+ +  +YN LI  +CK   ++ A    +EM ++GF     +++ L
Sbjct: 626 KSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSAL 685

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           I  L K      AR     M K GF +  + YN  +D
Sbjct: 686 IRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYID 722



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 1/261 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  + +GLCK      A  +   +   G      TYN LI GLCKAG 
Sbjct: 460 MVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGY 519

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A   + ++  +G  P+  TYTT++    ++ +     ++L  M   G       Y  
Sbjct: 520 LDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNV 579

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   GR++     +E M+   +  +  +YN+L+  YC    +++   +   M  + 
Sbjct: 580 LMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRN 639

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E ++ T+ ILI G CKA ++K A+     M + GF     +Y+ ++  L K  K   A 
Sbjct: 640 VEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEAR 699

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
            +F  M  K+ FT    V+N 
Sbjct: 700 KLFHDMR-KEGFTAEPDVYNF 719



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 91/193 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P   T+  +++ LCK+   D A  + + +  +G  P +VTYN+L+ G C +GR
Sbjct: 530 MDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGR 589

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +   + +L+ + +    PNA TY ++MK        K   EI   M  +    +   Y  
Sbjct: 590 VEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNI 649

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K   +KEA  +  +M+  G +L   SY+ LI L  K+ K   A  L  +M K+G
Sbjct: 650 LIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEG 709

Query: 181 FECDKYTHTILID 193
           F  +   +   ID
Sbjct: 710 FTAEPDVYNFYID 722



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 71/176 (40%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N+++NG C +   +   ++   + +    P   TYN L+K  C    
Sbjct: 565 MLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNN 624

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +++   I K +      PN  TY  ++K   + R  K      + M  KG+      Y  
Sbjct: 625 MKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSA 684

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +I    K  +  EA      M  +G   +   YN  I+    E  LEA   L DE+
Sbjct: 685 LIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDEL 740


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 122/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    +   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 VLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M+  G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A +L DEM  +G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 120/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A    ++M+  G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M   G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ P+ +T
Sbjct: 407 MQRDGYMPSVVT 418


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 161/311 (51%), Gaps = 8/311 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++ G CK    D A+   + L  +G   +++++N++++ LC  GR   A  +
Sbjct: 239 PDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKL 298

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAF 125
           L  +   G  P+ +T+  ++   F  +K  LG  L +L  M + G+T +   +  +I  F
Sbjct: 299 LATMLRKGCFPSVVTFNILIN--FLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGF 356

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                +  A +++E MV+ G   DIV+YN L+   CK+GK++ A ++L ++  +G     
Sbjct: 357 CNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSL 416

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  +IDGL K G  + A   LE M   G   +L     +V  L ++GK+  AI  F  
Sbjct: 417 ISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHY 476

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++      ++F Y+S++  LCKA++   A   L+  + +G +  +++   ++ G+ + G 
Sbjct: 477 LKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGL 536

Query: 302 RREAKKIQSKI 312
             EA K+ +++
Sbjct: 537 AEEASKLSNEL 547



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 7/293 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N+++N  CK+   + ALR+   L      P   TY+ ++  LC  G+L+ A  +L   
Sbjct: 141 SYNVLINAYCKSGEIEEALRV---LDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQ 197

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             S   P+ +T T ++    +       +++ + M+ KG   D   Y  +I  F K GRL
Sbjct: 198 LQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRL 257

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA  +++++ + G Q D++S+N ++   C  G+   A  LL  M ++G      T  IL
Sbjct: 258 DEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNIL 317

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I+ LC+ G +  A   LE M K G   N  ++N ++        ID AI   E M  +  
Sbjct: 318 INFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGC 377

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             D  TY+ ++  LCK  ++  A  +L      G      +   V+DGL   G
Sbjct: 378 YPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVG 430



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 131/304 (43%), Gaps = 39/304 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T  ++++  CK      A+++F  ++  G  P++VTYN+LIKG CK GRL  A   
Sbjct: 204 PDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIF 263

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK+L   G   + I++  I++                                   +   
Sbjct: 264 LKKLPSYGCQSDVISHNMILR-----------------------------------SLCS 288

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A   +  M+  G    +V++N LIN  C++G L  A  +L+ M K G   +  +
Sbjct: 289 GGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRS 348

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LI G C    I  A  HLE M   G   ++  YN ++  L KDGK+D A+ +   + 
Sbjct: 349 FNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLS 408

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K       +Y++++  L K  +   A +LL      G++       +VV GL   G   
Sbjct: 409 SKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVH 468

Query: 304 EAKK 307
           EA K
Sbjct: 469 EAIK 472



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 131/271 (48%), Gaps = 13/271 (4%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+  CTA    ++   CK   T NA R+   L++ G V +  +YN+LI   CK+G +  A
Sbjct: 103 DVVACTA----LIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEA 158

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              L+ L  +  APNA TY  ++ C   +R K K  +++L    +     D      +I 
Sbjct: 159 ---LRVLDHTSVAPNAATYDAVL-CSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLID 214

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  K   + +A     +M   G + D+V+YN LI  +CKEG+L+ A + L ++   G + 
Sbjct: 215 ATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQS 274

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  +H +++  LC  G    A   L  M + G   ++  +N +++ L + G +  A+NV 
Sbjct: 275 DVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVL 334

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           E M       +S +++ ++   C  K +  A
Sbjct: 335 EMMPKHGHTPNSRSFNPLIQGFCNRKGIDRA 365



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 97/193 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP + +FN ++ G C  +  D A+     +   G  P++VTYNIL+  LCK G++  A  
Sbjct: 343 TPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVV 402

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL +L   G +P+ I+Y T++    +  K +L +E+L  M  KG   D     +V+    
Sbjct: 403 ILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLS 462

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G++ EA  +   +   G++ +   YN+++   CK  +   A   L +M   G +  + 
Sbjct: 463 REGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEA 522

Query: 187 THTILIDGLCKAG 199
           ++T LI G+   G
Sbjct: 523 SYTTLIKGITYEG 535



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 126/261 (48%), Gaps = 11/261 (4%)

Query: 20  LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           L +N   +   R    +   G +P++V    LI+  CK GR + A  I+  L +SG   +
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 80  AITYTTIMKCCFRNRKYKLGLEIL--SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           A +Y  ++    ++ + +  L +L  +++     T+D      V+ +    G+LK+A   
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDA-----VLCSLCDRGKLKQAMQV 193

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           +++ +      D+V+   LI+  CKE  +  A  L +EM  +G + D  T+ +LI G CK
Sbjct: 194 LDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCK 253

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----T 253
            G +  A + L+ +   G  S++ ++N I+  L   G+   A+ +  +M  K  F    T
Sbjct: 254 EGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVT 313

Query: 254 YSSMVHNLCKAKRLPSASKLL 274
           ++ +++ LC+   L  A  +L
Sbjct: 314 FNILINFLCQKGLLGKALNVL 334



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+L  LCK+   D+A+ +   L   G  P L++YN +I GL K G+   A  +
Sbjct: 379 PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVEL 438

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  P+ IT T+++    R  K    ++    +K  G   + F Y +++    K
Sbjct: 439 LEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCK 498

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
             +   A D++  MV +G +    SY TLI     EG  E A  L +E+  +G 
Sbjct: 499 AQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGL 552


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 159/344 (46%), Gaps = 39/344 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN ++NG CK  +  +A ++   ++K    P + TYN L++GLC+  +   A 
Sbjct: 366 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 425

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ + D+G  P+ +TY  ++    +  +  +   I ++M   G   DGF +  +I   
Sbjct: 426 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGL 485

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG--------------------- 164
            K+GRL++A   +  MV  G+ LD V++  LI+ +CK G                     
Sbjct: 486 CKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTA 545

Query: 165 --------------KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                         KL  A  +L +M K G      THTILI+G C+AG    +   LE 
Sbjct: 546 HTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLER 605

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M + G   N+  Y  I++ L  +G+++ A  +  SM       + FTY+ +V    KA R
Sbjct: 606 MKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGR 665

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           L  A +++ + +K+G +       A++ G   S     A+ + S
Sbjct: 666 LDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSS 709



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 148/307 (48%), Gaps = 6/307 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ I+++ LC+    + A  +FR + KHG  P ++T+N LI G CK G + +A  
Sbjct: 332 VPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQ 391

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +L  +      PN  TY  +M+  C  ++ YK  L +L  +   G   D   Y  ++  F
Sbjct: 392 LLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL-LLRRVVDNGLLPDRVTYNILVDGF 450

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L  A +    M + G++ D  ++  LI+  CK G+LE A  +L  M K+G   D+
Sbjct: 451 CKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDE 510

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T T LIDG CK G  K      E M +    +    +NC +D LGKD K++ A  +   
Sbjct: 511 VTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGK 570

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V    T++ ++   C+A     + K+L    ++G          +++GL ++G 
Sbjct: 571 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 630

Query: 302 RREAKKI 308
             EA+ I
Sbjct: 631 VEEAETI 637



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 127/283 (44%), Gaps = 40/283 (14%)

Query: 21  CKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           C+      A R+F  + K     P  VTY+ILI GLC+AGRL  A  + +E+ + G  P+
Sbjct: 240 CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 299

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
             TYT ++K           +++L  M  K    +   Y  +I    + G+++EA     
Sbjct: 300 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 359

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--------------------- 178
           +M+  G+   I+++N LIN YCKEG + +A+ LL  MEK                     
Sbjct: 360 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 419

Query: 179 --------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
                          G   D+ T+ IL+DG CK G +  A      MN  G + +   + 
Sbjct: 420 KSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFT 479

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
            ++D L K G+++ A  +  SM  K    D  T+++++   CK
Sbjct: 480 ALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCK 522



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 153/363 (42%), Gaps = 78/363 (21%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC +T   +L  L K      A  ++R +   GFV   + Y  ++  LCK G ++ A   
Sbjct: 160 PCYST---LLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMF 216

Query: 68  ---LKELG-------------------DSGHA--------------PNAITYTTIMK--- 88
              +  LG                   D G A              PN++TY+ ++    
Sbjct: 217 CCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLC 276

Query: 89  -------------------CCFRNRKYKL-------------GLEILSAMKRKGYTFDGF 116
                              C    R Y +              +++L  M  K    +  
Sbjct: 277 EAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVH 336

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  +I    + G+++EA     +M+  G+   I+++N LIN YCKEG + +A+ LL  M
Sbjct: 337 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 396

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           EK   + +  T+  L++GLC+      A L L  +   G   +   YN +VD   K+G++
Sbjct: 397 EKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQL 456

Query: 237 DHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           + A N+F SM       D FT+++++  LCK  RL  A+ +L S +K G+ + +    A+
Sbjct: 457 NMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTAL 516

Query: 293 VDG 295
           +DG
Sbjct: 517 IDG 519



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 45/324 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN  L+ L K+   + A  M   + K+G VP +VT+ ILI+G C+AG    +  +L+ +
Sbjct: 547 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 606

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G +PN  TYT I+     N + +    IL +M   G + + F Y  ++ A VK GRL
Sbjct: 607 KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 666

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYC------------KEGKLEAAYL-------- 171
             A   +  MV +G Q +   Y+ L++ +               G L+A  L        
Sbjct: 667 DRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNN 726

Query: 172 -LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            L +E++K G   +   +  L+ GLCK G I  A    + M K G   + +A + I++  
Sbjct: 727 CLSNEIKKCGVPTEDL-YNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD-KAISSIIEHY 784

Query: 231 GKDGKIDHAIN----VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            K  K D+ +     V ++  V    +Y  ++H L    R                  ++
Sbjct: 785 CKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGR------------------VQ 826

Query: 287 SAQKAVVDGLRHSGCRREAKKIQS 310
            AQK V D +RH+G   E +   S
Sbjct: 827 EAQKLVSDLVRHTGIEEEVEVTPS 850



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 148/325 (45%), Gaps = 23/325 (7%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            TF  +++G CK     +   +F  + ++  +    T+N  +  L K  +L  A  +L +
Sbjct: 511 VTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGK 570

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+ +T+T +++   R  +  L L++L  MK+ G + + + Y  +I      GR
Sbjct: 571 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 630

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA   +  M + GV  +  +Y  L+  + K G+L+ A+ ++  M K G + + + ++ 
Sbjct: 631 VEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSA 690

Query: 191 LIDGLCKAGNIKGAR-------LHLEYMNKIGFDSNL-------------EAYNCIVDRL 230
           L+ G   +    GAR       L    ++    D+N              + YN +V  L
Sbjct: 691 LLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGL 750

Query: 231 GKDGKIDHAINVFESMEVKDSF---TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
            K+G+I  A  + + M     F     SS++ + CK  +  +  + +   L +      +
Sbjct: 751 CKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFA 810

Query: 288 AQKAVVDGLRHSGCRREAKKIQSKI 312
           +   V+ GLR+ G  +EA+K+ S +
Sbjct: 811 SYCWVIHGLRNEGRVQEAQKLVSDL 835



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 87/220 (39%), Gaps = 40/220 (18%)

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  M   G+      Y T++    K+     A     +MV +G  L  + Y T++N  CK
Sbjct: 147 LDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCK 206

Query: 163 EGKLEAAYLLLDEMEKQGFECDKY------------------------------------ 186
            G ++AA +   ++ + GF  D +                                    
Sbjct: 207 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSV 266

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ILI GLC+AG ++ A    + M + G   +   Y  ++      G  D A+ + + M
Sbjct: 267 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 326

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             K    +  TY+ ++  LC+  ++  A+ +    LK G+
Sbjct: 327 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 366


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 145/311 (46%), Gaps = 39/311 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N+M++GLC++   + A      +  +G  P+  TY  L+ GLCK  RL+ A+ +L E+
Sbjct: 280 TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEM 339

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG  PN + Y T++    +  K     +IL  M   G   +   Y  +I    KIG+L
Sbjct: 340 SCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQL 399

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A+  +++M+  G++ D  +YN L+  + ++   + A+ LL+EM   G   + Y++ I+
Sbjct: 400 GRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIM 459

Query: 192 IDGLC-----------------------------------KAGNIKGARLHLEYMNKIGF 216
           I+GLC                                   K GNI  A   LE M K   
Sbjct: 460 INGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANV 519

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
             +L  YN ++  L   G+++ A   +  ++    V D FTYS ++H  CK   L  A +
Sbjct: 520 HPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQ 579

Query: 273 LLLSCLKSGVR 283
           LL   L SG++
Sbjct: 580 LLRQMLNSGLK 590



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 146/316 (46%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P T T+N ++ G  +    D A  +   ++  G +P + +Y I+I GLC+ G 
Sbjct: 409 MIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGE 468

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+E+   G  PNA  Y  ++    +     L  E L  M +     D F Y +
Sbjct: 469 SKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNS 528

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I     +GR++EA +Y  Q+   G+  D  +Y+ LI+ YCK G LE A  LL +M   G
Sbjct: 529 LIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSG 588

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T L++G  K+ + +     L+ M   G   +   Y  ++  L +   ++ A 
Sbjct: 589 LKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAF 648

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   +E    V D   YSS++  LCK   +  A  LL    K G+        A++DG 
Sbjct: 649 MVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGF 708

Query: 297 RHSGCRREAKKIQSKI 312
             SG    A+ +   I
Sbjct: 709 CRSGDISRARNVFDSI 724



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 145/307 (47%), Gaps = 9/307 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   ++ P    +N ++ GL      + A   +  +QK G VP+  TY+ LI G CK G 
Sbjct: 514 MTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGN 573

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L+++ +SG  PNA TYT +++  F++  Y+    IL +M   G   D   Y  
Sbjct: 574 LEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGI 633

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    +   ++ A   + ++  +G+  D+  Y++LI+  CK   +E A  LLDEM K+G
Sbjct: 634 VIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEG 693

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E     +  LIDG C++G+I  AR   + +   G   N   Y  ++D   K+G I  A 
Sbjct: 694 LEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAF 753

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++++ M       D+F Y+ +      A  L  A  L       G      A  ++ + L
Sbjct: 754 DLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY-----ANVSLFNTL 808

Query: 297 RHSGCRR 303
            H  C+R
Sbjct: 809 VHGFCKR 815



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 153/312 (49%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++  +   CK R  D A ++F  +++       VTYN++I GLC++G +  A 
Sbjct: 239 ILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAF 298

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+ D G +P+A TY  +M    +  + K    +L  M   G   +   Y T++  F
Sbjct: 299 GFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGF 358

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K G+  EA D +++M++ GVQ + + Y+ LI   CK G+L  A  LL EM K G   D 
Sbjct: 359 MKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDT 418

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  L+ G  +  +  GA   L  M   G   N+ +Y  +++ L ++G+   A N+ E 
Sbjct: 419 FTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEE 478

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    ++F Y+ ++    K   +  A + L    K+ V        +++ GL   G 
Sbjct: 479 MISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGR 538

Query: 302 RREAKKIQSKIR 313
             EA++  ++++
Sbjct: 539 MEEAEEYYAQVQ 550



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 18  NGLCKNRYTDNALRMFRGL----QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           NGL K+    +A+ +   L    +  G +P++ TY+  I+  CKA     A+ + +E+  
Sbjct: 212 NGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRR 271

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
              A N +TY  ++    R+   +        M   G + D F Y  ++    K  RLKE
Sbjct: 272 RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKE 331

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +++M   G++ +IV Y TL++ + KEGK   A+ +L EM   G + +K  +  LI 
Sbjct: 332 AKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIR 391

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV----DRLGKDGKIDHAINVFESMEVK 249
           GLCK G +  A   L+ M K+G   +   YN ++     +  KDG  +    +  S  + 
Sbjct: 392 GLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILP 451

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           + ++Y  M++ LC+      A  LL   +  G++
Sbjct: 452 NVYSYGIMINGLCQNGESKEAGNLLEEMISEGLK 485



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 147/344 (42%), Gaps = 44/344 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFR-----GLQKHGFV------------------ 42
           + P   ++ IM+NGLC+N  +  A  +       GL+ + F+                  
Sbjct: 449 ILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLAC 508

Query: 43  ------------PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                       P+L  YN LIKGL   GR+  A     ++   G  P+  TY+ ++   
Sbjct: 509 EALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGY 568

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +    +   ++L  M   G   +   Y  ++  + K    ++ +  ++ M+  G + D 
Sbjct: 569 CKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDN 628

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
             Y  +I    +   +E A+++L E+EK G   D + ++ LI GLCK  +++ A   L+ 
Sbjct: 629 HIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDE 688

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKR 266
           M K G +  +  YN ++D   + G I  A NVF+S+     V +  TY++++   CK   
Sbjct: 689 MAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGD 748

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           +  A  L    L  G+     A  A V  +  +GC   A   Q+
Sbjct: 749 ITDAFDLYKEMLDRGI-----APDAFVYNVLATGCSDAADLEQA 787



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 4/245 (1%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P     ++L+    K G +R A  ++  + D G AP       ++K   R    +L  ++
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKL 230

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
              M+  G   D + Y T I A  K      A    E+M      ++ V+YN +I+  C+
Sbjct: 231 KGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCR 290

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
            G +E A+   +EM   G   D +T+  L++GLCK   +K A+  L+ M+  G   N+  
Sbjct: 291 SGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVV 350

Query: 223 YNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           Y  +VD   K+GK   A ++ + M       +   Y +++  LCK  +L  ASKLL   +
Sbjct: 351 YGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMI 410

Query: 279 KSGVR 283
           K G+R
Sbjct: 411 KVGLR 415



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 141/305 (46%), Gaps = 8/305 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P TA  +++++   K     NA ++   +   G  P     N L+K L +A  +    W
Sbjct: 170 SPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELL-W 228

Query: 67  ILKELGD-SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            LK   + +G  P+  TY+T ++   + R +    ++   M+R+    +   Y  +I+  
Sbjct: 229 KLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGL 288

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G ++EA  + E+MV  G+  D  +Y  L+N  CK  +L+ A  LLDEM   G + + 
Sbjct: 289 CRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNI 348

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  L+DG  K G    A   L+ M   G   N   Y+ ++  L K G++  A  + + 
Sbjct: 349 VVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKE 408

Query: 246 MEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M +K     D+FTY+ ++    +      A +LL     SG+     +   +++GL  +G
Sbjct: 409 M-IKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNG 467

Query: 301 CRREA 305
             +EA
Sbjct: 468 ESKEA 472



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 1/242 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    + I++  L ++   + A  +   ++K+G VP+L  Y+ LI GLCK   +  A  +
Sbjct: 626 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGL 685

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P  + Y  ++    R+        +  ++  KG   +   Y  +I    K
Sbjct: 686 LDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCK 745

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + +A D  ++M+  G+  D   YN L         LE A  L +EM  +G+      
Sbjct: 746 NGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSLF 805

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+ G CK G ++     L  M       N +    +V   GK GK+  A  VF  ++
Sbjct: 806 NT-LVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQ 864

Query: 248 VK 249
            K
Sbjct: 865 QK 866



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CKN    +A  +++ +   G  P+   YN+L  G   A  L  A 
Sbjct: 729 LVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQAL 788

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++ +E+ + G+A  ++  T +   C R  K +   ++L  M  +    +      V++ F
Sbjct: 789 FLTEEMFNRGYANVSLFNTLVHGFCKRG-KLQETEKLLHVMMDREIVPNAQTVEKVVSEF 847

Query: 126 VKIGRLKEA 134
            K G+L EA
Sbjct: 848 GKAGKLGEA 856


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 154/317 (48%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+N++++G  K+     A  +   ++     P   TY++LI GLC +  
Sbjct: 407 MLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSD 466

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +L ++  +G  PN   Y T++K   +  +Y++ +E+L  M   G   D F Y  
Sbjct: 467 LQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNC 526

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    +  +++EA   +  M   G++ +  +Y   INLY K G+++ A     +M   G
Sbjct: 527 LIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG 586

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +   +TILI G C  GN   A    + M + G   ++ AY+ I+  L K+GK   A+
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAM 646

Query: 241 NVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            VF    ++  V D F Y+S++   CK   +  AS+L    L +G+         +++GL
Sbjct: 647 GVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGL 706

Query: 297 RHSGCRREAKKIQSKIR 313
              G   +A+++  +I 
Sbjct: 707 CKLGEVTKARELFDEIE 723



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 147/304 (48%), Gaps = 4/304 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N  + GLC+    D AL + + + + G  P+  TY +L+ G CK  R + A+ I
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +  SG  PN  TYT ++    +    +  L I   M  +G   +   Y  +I    K
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + +A     +M+  G++ D  +YN LI+ Y K   +  A  LL EM+ +      +T
Sbjct: 394 AGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +++LI GLC + +++ A   L+ M + G   N+  Y  ++    ++ + + AI + + M 
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D F Y+ ++  LC+AK++  A  LL+   + G++       A ++    SG  +
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 304 EAKK 307
            A++
Sbjct: 574 VAER 577



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 138/272 (50%), Gaps = 3/272 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+   +N   K+     A R F+ +   G VP  V Y ILIKG C  G    A 
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              K + + G  P+   Y+ I+    +N K K  + +     + G   D F Y ++I+ F
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +++A+   ++M+ +G+  +IV YNTLIN  CK G++  A  L DE+E++    D 
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDV 731

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ +IDG CK+GN+  A    + M   G   +   Y  ++D  GK+G ++ A+++F  
Sbjct: 732 VTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE 791

Query: 246 MEVKDSFT---YSSMVHNLCKAKRLPSASKLL 274
            + K   +   ++S++ + CK  ++  A +L 
Sbjct: 792 AQQKSVGSLSAFNSLIDSFCKHGKVIEARELF 823



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 4/309 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P   T+  +++G  K    + ALR+   +   G    +VTYN +I G+ KAG 
Sbjct: 337 MPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGE 396

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+  +G  P+  TY  ++    ++       E+L+ MK +  T   F Y  
Sbjct: 397 MAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSV 456

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+       L++A + ++QM+ +GV+ ++  Y TLI  Y +E + E A  LL  M   G
Sbjct: 457 LISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANG 516

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + +  LI GLC+A  ++ A++ L  M + G   N   Y   ++   K G+I  A 
Sbjct: 517 VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAE 576

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             F+ M     V ++  Y+ ++   C       A       L+ G+     A  A++  L
Sbjct: 577 RYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSL 636

Query: 297 RHSGCRREA 305
             +G  +EA
Sbjct: 637 SKNGKTKEA 645



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 136/281 (48%), Gaps = 9/281 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    + I++ G C    T  AL  F+ + + G +P++  Y+ +I  L K G+
Sbjct: 582 MLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGK 641

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +  +   +G  P+   Y +++    +    +   ++   M   G   +   Y T
Sbjct: 642 TKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNT 701

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+G + +A +  +++    +  D+V+Y+T+I+ YCK G L  A+ L DEM  +G
Sbjct: 702 LINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKG 761

Query: 181 FECDKYTHTILIDGLCKAGNIKGA--RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
              D Y + ILIDG  K GN++ A    H      +G   +L A+N ++D   K GK+  
Sbjct: 762 ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG---SLSAFNSLIDSFCKHGKVIE 818

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
           A  +F+ M  K    +  TY+ ++    KA+ +  A +L L
Sbjct: 819 ARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFL 859



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 147/310 (47%), Gaps = 23/310 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++G CK    + A +++  +  +G  P +V YN LI GLCK G +  AR
Sbjct: 657 VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKAR 716

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ +    P+ +TY+TI+    ++       ++   M  KG + DG+ YC +I   
Sbjct: 717 ELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGC 776

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L++A     +     V   + ++N+LI+ +CK GK+  A  L D+M  +    + 
Sbjct: 777 GKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNI 835

Query: 186 YTHTILIDGLCKAGNIKGAR---LHLEYMNKIG----FDSNLEAYNCIVDRLGKDGKIDH 238
            T+TILID   KA  ++ A    L +E  N I     + S L +YN I +R         
Sbjct: 836 VTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRF-------K 888

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            I++F+ ME +    D+  Y  M    CK  +   A KLL   L  G+++    +  V D
Sbjct: 889 MISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKL----EDDVFD 944

Query: 295 GLRHSGCRRE 304
            L    C+ +
Sbjct: 945 ALIFHLCKEK 954



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 136/286 (47%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P    +  ++    +    + A+ + + +  +G +P+L  YN LI GLC+A +
Sbjct: 477 MIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKK 536

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L ++G+ G  PNA TY   +    ++ + ++       M   G   +   Y  
Sbjct: 537 VEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTI 596

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I     +G   EA    + M+  G+  DI +Y+ +I+   K GK + A  +  +  K G
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + +  LI G CK G+I+ A    + M   G + N+  YN +++ L K G++  A 
Sbjct: 657 VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKAR 716

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +F+ +E    V D  TYS+++   CK+  L  A KL    +  G+
Sbjct: 717 ELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGI 762



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 31  RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
           +++  + +   VP++ TY  +IK  CK G +   + +L E+ +    PN  TY   +   
Sbjct: 228 KVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGL 286

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +       LE+   M  KG   DG  Y  ++  F K  R KEA    E M + G+  + 
Sbjct: 287 CQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNR 346

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y  LI+ + KEG +E A  + DEM  +G + +  T+  +I G+ KAG +  A      
Sbjct: 347 FTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNE 406

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M   G + +   YN ++D   K   +  A  +   M+ +      FTYS ++  LC +  
Sbjct: 407 MLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSD 466

Query: 267 LPSASKLLLSCLKSGVR 283
           L  A+++L   +++GV+
Sbjct: 467 LQKANEVLDQMIRNGVK 483



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             F+I ++      + + A  +F      GF P L+  N L++ L KA  +     +   
Sbjct: 173 TVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGS 232

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + ++   P+  TYT ++K   +      G  +LS M+++    + F Y   I    + G 
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKP-NLFTYNAFIGGLCQTGA 291

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + EA +  + M+  G+  D  +Y  L++ +CK+ + + A L+ + M   G   +++T+T 
Sbjct: 292 VDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTA 351

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248
           LIDG  K GNI+ A    + M   G   N+  YN ++  + K G++  A+++F  M +  
Sbjct: 352 LIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG 411

Query: 249 --KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D++TY+ ++    K+  +  A +LL       +         ++ GL HS   ++A 
Sbjct: 412 LEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKAN 471

Query: 307 KI 308
           ++
Sbjct: 472 EV 473



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 2/207 (0%)

Query: 11   ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            + FN +++  CK+     A  +F  +      P +VTY ILI    KA  +  A  +  +
Sbjct: 801  SAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLD 860

Query: 71   LGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +      PN +TYT+++    +   ++K+ + +   M+ +G   D   Y  + +A+ K G
Sbjct: 861  METRNIIPNTLTYTSLLLSYNQIGNRFKM-ISLFKDMEARGIACDAIAYGVMASAYCKEG 919

Query: 130  RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +  EA   + + + +G++L+   ++ LI   CKE ++     LL EM K+       T  
Sbjct: 920  KSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCN 979

Query: 190  ILIDGLCKAGNIKGARLHLEYMNKIGF 216
             L+ G  K+GN   A   L  M ++G+
Sbjct: 980  TLLLGFYKSGNEDEASKVLGVMQRLGW 1006



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 7/250 (2%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI   ++P    + I+++G  K    + AL +F   Q+   V  L  +N LI   CK G+
Sbjct: 757  MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS-VGSLSAFNSLIDSFCKHGK 815

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  AR +  ++ D    PN +TYT ++    +    +   ++   M+ +    +   Y +
Sbjct: 816  VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTS 875

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++ ++ +IG   +     + M   G+  D ++Y  + + YCKEGK   A  LL++   +G
Sbjct: 876  LLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 935

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRLG--KDGKID 237
             + +      LI  LCK   I      LE ++++G +  +L +  C    LG  K G  D
Sbjct: 936  IKLEDDVFDALIFHLCKEKQISTV---LELLSEMGKEELSLSSKTCNTLLLGFYKSGNED 992

Query: 238  HAINVFESME 247
             A  V   M+
Sbjct: 993  EASKVLGVMQ 1002



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 29/275 (10%)

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           L +Y+IL   LC +G +  A  +L++L  +   P                     LEIL 
Sbjct: 120 LHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPP---------------------LEILD 158

Query: 105 AMKRKGYTFDGFG---YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           ++ R    F G     +   I  F  +G L EA+      +++G    ++  N L+    
Sbjct: 159 SLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLL 218

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K   +   + +   M +     D YT+T +I   CK G++   ++ L  M K     NL 
Sbjct: 219 KANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK-ECKPNLF 277

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            YN  +  L + G +D A+ V + M  K    D  TY+ +V   CK KR   A  +  S 
Sbjct: 278 TYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM 337

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             SG+   +    A++DG    G   EA +I+ ++
Sbjct: 338 PSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEM 372


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 159/344 (46%), Gaps = 39/344 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN ++NG CK  +  +A ++   ++K    P + TYN L++GLC+  +   A 
Sbjct: 300 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 359

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ + D+G  P+ +TY  ++    +  +  +   I ++M   G   DGF +  +I   
Sbjct: 360 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGL 419

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG--------------------- 164
            K+GRL++A   +  MV  G+ LD V++  LI+ +CK G                     
Sbjct: 420 CKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTA 479

Query: 165 --------------KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                         KL  A  +L +M K G      THTILI+G C+AG    +   LE 
Sbjct: 480 HTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLER 539

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M + G   N+  Y  I++ L  +G+++ A  +  SM       + FTY+ +V    KA R
Sbjct: 540 MKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGR 599

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           L  A +++ + +K+G +       A++ G   S     A+ + S
Sbjct: 600 LDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSS 643



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 148/307 (48%), Gaps = 6/307 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ I+++ LC+    + A  +FR + KHG  P ++T+N LI G CK G + +A  
Sbjct: 266 VPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQ 325

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +L  +      PN  TY  +M+  C  ++ YK  L +L  +   G   D   Y  ++  F
Sbjct: 326 LLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL-LLRRVVDNGLLPDRVTYNILVDGF 384

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L  A +    M + G++ D  ++  LI+  CK G+LE A  +L  M K+G   D+
Sbjct: 385 CKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDE 444

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T T LIDG CK G  K      E M +    +    +NC +D LGKD K++ A  +   
Sbjct: 445 VTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGK 504

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V    T++ ++   C+A     + K+L    ++G          +++GL ++G 
Sbjct: 505 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 564

Query: 302 RREAKKI 308
             EA+ I
Sbjct: 565 VEEAETI 571



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 127/283 (44%), Gaps = 40/283 (14%)

Query: 21  CKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           C+      A R+F  + K     P  VTY+ILI GLC+AGRL  A  + +E+ + G  P+
Sbjct: 174 CRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 233

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
             TYT ++K           +++L  M  K    +   Y  +I    + G+++EA     
Sbjct: 234 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 293

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--------------------- 178
           +M+  G+   I+++N LIN YCKEG + +A+ LL  MEK                     
Sbjct: 294 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 353

Query: 179 --------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
                          G   D+ T+ IL+DG CK G +  A      MN  G + +   + 
Sbjct: 354 KSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFT 413

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
            ++D L K G+++ A  +  SM  K    D  T+++++   CK
Sbjct: 414 ALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCK 456



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 153/363 (42%), Gaps = 78/363 (21%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC +T   +L  L K      A  ++R +   GFV   + Y  ++  LCK G ++ A   
Sbjct: 94  PCYST---LLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMF 150

Query: 68  ---LKELG-------------------DSGHA--------------PNAITYTTIMK--- 88
              +  LG                   D G A              PN++TY+ ++    
Sbjct: 151 CCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLC 210

Query: 89  -------------------CCFRNRKYKL-------------GLEILSAMKRKGYTFDGF 116
                              C    R Y +              +++L  M  K    +  
Sbjct: 211 EAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVH 270

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  +I    + G+++EA     +M+  G+   I+++N LIN YCKEG + +A+ LL  M
Sbjct: 271 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 330

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           EK   + +  T+  L++GLC+      A L L  +   G   +   YN +VD   K+G++
Sbjct: 331 EKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQL 390

Query: 237 DHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           + A N+F SM       D FT+++++  LCK  RL  A+ +L S +K G+ + +    A+
Sbjct: 391 NMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTAL 450

Query: 293 VDG 295
           +DG
Sbjct: 451 IDG 453



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 145/306 (47%), Gaps = 6/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN  L+ L K+   + A  M   + K+G VP +VT+ ILI+G C+AG    +  +L+ +
Sbjct: 481 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 540

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G +PN  TYT I+     N + +    IL +M   G + + F Y  ++ A VK GRL
Sbjct: 541 KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 600

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL--LDEMEKQGFECDKYTHT 189
             A   +  MV +G Q +   Y+ L++ +        A  L    +++ +    ++  + 
Sbjct: 601 DRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNN 660

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            L   + +  ++  A    + + K G  +  + YN +V  L K+G+I  A  + + M   
Sbjct: 661 CLSSHVFRLMDVDHALKIRDEIKKCGVPTE-DLYNFLVVGLCKEGRIIEADQLTQDMVKH 719

Query: 250 DSF---TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
             F     SS++ + CK  +  +  + +   L +      ++   V+ GLR+ G  +EA+
Sbjct: 720 GLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQ 779

Query: 307 KIQSKI 312
           K+ S +
Sbjct: 780 KLVSDL 785



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 130/277 (46%), Gaps = 5/277 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            TF  +++G CK     +   +F  + ++  +    T+N  +  L K  +L  A  +L +
Sbjct: 445 VTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGK 504

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+ +T+T +++   R  +  L L++L  MK+ G + + + Y  +I      GR
Sbjct: 505 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 564

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA   +  M + GV  +  +Y  L+  + K G+L+ A+ ++  M K G + + + ++ 
Sbjct: 565 VEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSA 624

Query: 191 LIDGLCKAGNIKGARLHLEY--MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           L+ G   +    GAR       ++     S     NC+   + +   +DHA+ + + ++ 
Sbjct: 625 LLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKK 684

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             V     Y+ +V  LCK  R+  A +L    +K G+
Sbjct: 685 CGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGL 721



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 87/220 (39%), Gaps = 40/220 (18%)

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  M   G+      Y T++    K+     A     +MV +G  L  + Y T++N  CK
Sbjct: 81  LDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCK 140

Query: 163 EGKLEAAYLLLDEMEKQGFECDKY------------------------------------ 186
            G ++AA +   ++ + GF  D +                                    
Sbjct: 141 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSV 200

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ILI GLC+AG ++ A    + M + G   +   Y  ++      G  D A+ + + M
Sbjct: 201 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 260

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             K    +  TY+ ++  LC+  ++  A+ +    LK G+
Sbjct: 261 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 300


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 145/298 (48%), Gaps = 4/298 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NIM++ LCK    + A  +F  +++ GF P++VTYN LI G  K G L     I +++
Sbjct: 58  TYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM 117

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D+   P+ ITY  ++ C  +  +     E L  MK  G   +   Y T I AF K G L
Sbjct: 118 KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGML 177

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA  +   M    +  +  +Y +LI+  CK G L  A  L++E+ + G + +  T+T L
Sbjct: 178 QEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTAL 237

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +DGLC+ G +K A      M   G   N E Y  +V    K  ++++A ++ + M+ K  
Sbjct: 238 LDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 297

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             D   Y +++  LC   RL  A  L+    +SG+         ++D    SG   EA
Sbjct: 298 KPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEA 355



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 164/324 (50%), Gaps = 22/324 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   + N +L+ L K    D + + F+ +   G    + TYNI+I  LCK G L  AR +
Sbjct: 19  PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL 78

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE-----ILSAMKRKGYTFDGFGYCTVI 122
             ++ ++G  P+ +TY +++     +   KLGL      I   MK      D   Y  +I
Sbjct: 79  FTQMKEAGFTPDIVTYNSLI-----DGHGKLGLLDECICIFEQMKDADCDPDVITYNALI 133

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K  R+ +A +++ +M  +G++ ++V+Y+T I+ +CKEG L+ A     +M +    
Sbjct: 134 NCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALT 193

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +++T+T LID  CKAGN+  A   +E + + G   N+  Y  ++D L ++G++  A  V
Sbjct: 194 PNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEV 253

Query: 243 FESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLS----CLKSGVRILKSAQKAVVD 294
           F +M       +  TY+++VH   KAK +  A  +L      C+K  + +  +    ++ 
Sbjct: 254 FRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGT----ILW 309

Query: 295 GLRHSGCRREAKKIQSKIRMAKIS 318
           GL +     EAK +  +I+ + I+
Sbjct: 310 GLCNESRLEEAKLLIGEIKESGIN 333



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 139/309 (44%), Gaps = 8/309 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            D  P   T+N ++N  CK      A      ++ +G  P +VTY+  I   CK G L+ 
Sbjct: 120 ADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQE 179

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A     ++      PN  TYT+++    +       L+++  + + G   +   Y  ++ 
Sbjct: 180 AIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLD 239

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + GR+KEA +    M+  GV  +  +Y  L++ + K  ++E A  +L EM+++  + 
Sbjct: 240 GLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKP 299

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D   +  ++ GLC    ++ A+L +  + + G ++N   Y  ++D   K G+   A+ + 
Sbjct: 300 DLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLL 359

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           E M          +V  LCK      A KL    L  G+   K A  A++DG    G  +
Sbjct: 360 EEM--------LDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQ 411

Query: 304 EAKKIQSKI 312
           EA  ++ ++
Sbjct: 412 EALNLRDRM 420



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++  ++  CK      A++ F  +++    P   TY  LI   CKAG L  A 
Sbjct: 157 LKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEAL 216

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++E+  +G   N +TYT ++       + K   E+  AM   G   +   Y  ++  F
Sbjct: 217 KLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGF 276

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K   ++ A D +++M    ++ D++ Y T++   C E +LE A LL+ E+++ G   + 
Sbjct: 277 IKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNA 336

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T L+D   K+G    A   LE M              +VD L K+   + A  +F+ 
Sbjct: 337 VIYTTLMDAYFKSGQATEALTLLEEMLD------------LVDGLCKNNCFEVAKKLFDE 384

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     + D   Y++++    K   L  A  L    ++ G+ +   A  A++ GL HSG 
Sbjct: 385 MLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQ 444

Query: 302 RREAKKI 308
            ++A+ +
Sbjct: 445 VQKARNL 451



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 4/291 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           + A   F  ++K    P+  + N L+  L K GR   +R   K++G +G   +  TY  +
Sbjct: 3   EEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIM 62

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +    +    ++   + + MK  G+T D   Y ++I    K+G L E     EQM     
Sbjct: 63  IDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADC 122

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
             D+++YN LIN +CK  ++  A+  L EM+  G + +  T++  ID  CK G ++ A  
Sbjct: 123 DPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIK 182

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
               M ++    N   Y  ++D   K G +  A+ + E +       +  TY++++  LC
Sbjct: 183 FFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLC 242

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           +  R+  A ++  + L +GV   +    A+V G   +     AK I  +++
Sbjct: 243 EEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMK 293



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 12/246 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  +++G  K +  + A  + + +++    P+L+ Y  ++ GLC   R
Sbjct: 257 MLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESR 316

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ ++ E+ +SG   NA+ YTT+M   F++ +    L +L  M              
Sbjct: 317 LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM------------LD 364

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K    + A    ++M+  G+  D ++Y  LI+   K G L+ A  L D M + G
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 424

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D + +T LI GL  +G ++ AR  L+ M   G   +   Y C++ +    GK+D A+
Sbjct: 425 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 484

Query: 241 NVFESM 246
            +   M
Sbjct: 485 ELQNEM 490



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           L+ GLCK      A+ +  E+ D G  P+ I YT ++    ++   +  L +   M   G
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 424

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              D   Y  +I      G++++A + +++M+  GV  D V Y  LI  Y   GK++ A 
Sbjct: 425 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 484

Query: 171 LLLDEMEKQG 180
            L +EM K+G
Sbjct: 485 ELQNEMAKRG 494


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 150/312 (48%), Gaps = 6/312 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N + +  C+      A ++   ++K G  P ++T N +I GLC+ GR+  A   
Sbjct: 238 PNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEF 297

Query: 68  LKELGDSGHAP--NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +E          NA+TY+T+           + +E+   M   G+  D   Y T+I+  
Sbjct: 298 FREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGL 357

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GRL +A      M   G +LD  +YN LI  +C++ KL  AY LL+EM+  G + D 
Sbjct: 358 TQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDV 417

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+  L+ GLCKAG+       L +M   G   ++  +  +V    K GK D A+ +F S
Sbjct: 418 YTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRS 477

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      ++  Y++++  LCK++ +  A KL     +  V    +   A++ GL+    
Sbjct: 478 MDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQDKKM 537

Query: 302 RREAKKIQSKIR 313
             +A ++  ++R
Sbjct: 538 AEKAFELMDRMR 549



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 10/320 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTAR 65
           P   T+ I+LNGLCK+ +  +AL++   +   G    P++   N ++ GLCK GRL+ A 
Sbjct: 164 PDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAI 223

Query: 66  WILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             + E     H  APNA+TY  +     R     +  +I++ M+++G   +     T+I 
Sbjct: 224 IFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIG 283

Query: 124 AFVKIGRLKEATDYMEQ--MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
              ++GR+  A ++  +   V    + + V+Y+TL + +     ++ A  L  EM   G 
Sbjct: 284 GLCRVGRVGAALEFFREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGH 343

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D   +  +I GL +AG +  A      M K GF  + +AYN ++    +  K+  A  
Sbjct: 344 RPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYE 403

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           + E M+      D +TY++++  LCKA    +  +LL   +  G +        +V G  
Sbjct: 404 LLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYC 463

Query: 298 HSGCRREAKKIQSKIRMAKI 317
            +G   EA +I   +  A+I
Sbjct: 464 KAGKTDEALRIFRSMDEARI 483



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI++ G C+ +    A  +   ++  G  P++ TYN L+ GLCKAG       +L  + 
Sbjct: 385 YNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMI 444

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G  P+ +T+ T++    +  K    L I  +M       +   Y T+I    K   + 
Sbjct: 445 DDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVD 504

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A    ++M    V  ++ +YN L+     +   E A+ L+D M ++    +  T  +L+
Sbjct: 505 VAIKLFDEMREKNVPANVTTYNALLKGLQDKKMAEKAFELMDRMREERCTPNYVTVDVLM 564

Query: 193 DGLCKAGNIK 202
           + L + G  +
Sbjct: 565 EWLPEIGETE 574



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 63/140 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TF  +++G CK   TD ALR+FR + +    P  V YN LI  LCK+  
Sbjct: 443 MIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSRE 502

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ +     N  TY  ++K     +  +   E++  M+ +  T +      
Sbjct: 503 VDVAIKLFDEMREKNVPANVTTYNALLKGLQDKKMAEKAFELMDRMREERCTPNYVTVDV 562

Query: 121 VIAAFVKIGRLKEATDYMEQ 140
           ++    +IG  +    +M+Q
Sbjct: 563 LMEWLPEIGETERLKCFMQQ 582



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 75/162 (46%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L+GLCK         +   +   G  P +VT+  L+ G CKAG+   A 
Sbjct: 413 LQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEAL 472

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + + ++   PN + Y T++    ++R+  + +++   M+ K    +   Y  ++   
Sbjct: 473 RIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGL 532

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
                 ++A + M++M  +    + V+ + L+    + G+ E
Sbjct: 533 QDKKMAEKAFELMDRMREERCTPNYVTVDVLMEWLPEIGETE 574


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 122/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    +   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 VLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M+  G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
            + +  T+T++I+  CK G++      L+ M + G+  ++
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSV 416



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A +L DEM  +G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+ G  K G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A    ++M+  G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M   G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ P+ +T
Sbjct: 407 MQRDGYKPSVVT 418


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 146/279 (52%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G C     ++AL++F G+  +   P + TY  LI GLCK+G++  A  +
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + ++G  PN +TYT +++        +    +L  M+  G   + + +  +I A  K
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +++EA  ++  +V  GV+++ V Y +LI+  CK GK++AA  L+ +M  +GF  D ++
Sbjct: 330 REKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLC+   +  A L LE M + G  ++   Y  I+D L ++   +    +F+ M 
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 D  TY+  V + C+  R+  A  +++  +  GV
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +L+GL        A+ +F G++     P+   Y  ++ GLC+AGR   A  +L+E 
Sbjct: 144 TYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  PN + Y  ++       + +  L++   M     + +   Y  +I    K G++
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV 263

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A     +MV  G++ ++V+Y  LI   C EG L+ A+ LL  ME  G   + +T ++L
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           ID LCK   ++ A+L L  + K G   N   Y  ++D L K GKID A  + + M     
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V D+ +YSS++  LC+ K+L  A+ +L   ++ G++        ++D L         KK
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 308 IQSKI 312
           I  K+
Sbjct: 444 IFDKM 448



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 136/256 (53%), Gaps = 4/256 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+  +++GLCK+   + A+ +F  + + G  P +VTY  LI+G C  G L+ A  
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +  +G  PN  T++ ++    +  K +     L ++ +KG   +   Y ++I    
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLC 363

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++  A + M++M+++G   D  SY++LI+  C++ KL  A L+L++M ++G +    
Sbjct: 364 KTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPV 423

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+TI+ID L +    +G +   + M   G + ++  Y   V    ++G+++ A ++   M
Sbjct: 424 TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQM 483

Query: 247 EVKDSF----TYSSMV 258
             +  F    TY++++
Sbjct: 484 VDRGVFPNLVTYNTLI 499



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 133/279 (47%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  +  M++GLC+   T+ A  +      +GF P +V YN LI G C AG +  A  +
Sbjct: 175 PDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +  +  +PN  TYT ++    ++ K +  + + S M   G   +   Y  +I     
Sbjct: 235 FEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN 294

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A   +  M T+G+  +  +++ LI+  CK  K+E A L L  + K+G + ++  
Sbjct: 295 EGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVV 354

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LIDGLCK G I  A   ++ M   GF  +  +Y+ ++D L +  K+  A  + E M 
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            K       TY+ ++  L +        K+    + +G+
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGI 453



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 136/305 (44%), Gaps = 16/305 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF+++++ LCK    + A      L K G     V Y  LI GLCK G++  A 
Sbjct: 313 LVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAAD 372

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++++   G  P+A +Y++++    R +K      +L  M  KG       Y  +I   
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           V+    +      ++M+  G+  DIV+Y   +  YC+EG++E A  ++ +M  +G   + 
Sbjct: 433 VREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNL 492

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G    G +  A    E M   G+  N ++Y  ++  + K    D+++++++ 
Sbjct: 493 VTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKI 552

Query: 246 MEVKD----------------SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            ++KD                +  YS  +  LC+  RL  A    +    + +   +   
Sbjct: 553 ADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVY 612

Query: 290 KAVVD 294
            +++D
Sbjct: 613 TSIID 617



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++N  C       A +    L   G  P+   Y   + G C+AG L  A  +   +
Sbjct: 74  TYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLM 133

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G    A TYT ++         +  + +   M+      D   Y T++    + GR 
Sbjct: 134 PLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRT 193

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA   +E+ +++G + +IV YN LI+ YC  G++E A  + + M+      +  T+T L
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTEL 253

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I GLCK+G ++ A +    M + G + N+  Y  ++     +G +  A  +   ME    
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGL 313

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V + +T+S ++  LCK +++  A   L S +K GV++ +    +++DGL  +G    A +
Sbjct: 314 VPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADE 373

Query: 308 IQSKI 312
           +  K+
Sbjct: 374 LMQKM 378



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 112/246 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  ++ G C   +   A R+   ++ +G VP   T+++LI  LCK  +
Sbjct: 273 MVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREK 332

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+  L  L   G   N + YT+++    +  K     E++  M  +G+  D   Y +
Sbjct: 333 VEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSS 392

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    +  +L +AT  +E M+  G+Q   V+Y  +I+   +E   E    + D+M   G
Sbjct: 393 LIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATG 452

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+T+ +   C+ G ++ A   +  M   G   NL  YN ++      G +  A 
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAF 512

Query: 241 NVFESM 246
           + FE M
Sbjct: 513 STFEVM 518



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 4/175 (2%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ME + +     ++ +Y TLIN YC  G + AA   L  +   G   D Y +T  + G C+
Sbjct: 60  MESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCR 119

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
           AG +  A      M   G       Y  ++  L   G +  A+ VF  M       D+  
Sbjct: 120 AGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHV 179

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           Y++MVH LC+A R   A  LL   + +G         A++DG  ++G    A K+
Sbjct: 180 YATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 23/193 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+ + +   C+    ++A  M   +   G  P LVTYN LI+G    G 
Sbjct: 448 MIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGL 507

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    + +   G  PN  +YT +++   +       ++I                  
Sbjct: 508 VSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIW----------------- 550

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                 KI  +K+    +E +    + L    Y+  I   C+  +LE A      M+   
Sbjct: 551 ------KIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNAN 604

Query: 181 FECDKYTHTILID 193
               +  +T +ID
Sbjct: 605 LTPSEDVYTSIID 617


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 39/310 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG------------ 59
           T NI++ GLCK+   + AL     +   G  P+++TYN LI   CKAG            
Sbjct: 382 THNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEM 441

Query: 60  -----------------------RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96
                                  R   A+ +L+     G  P+ ++Y T+M   F+    
Sbjct: 442 VRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNS 501

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           +  L +   M  K  T     Y T+I    ++GRLKEA D + +++  G+  D  +YN +
Sbjct: 502 EPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNII 561

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           I+ YCKEG LE A+   ++M +  F+ D  T   L++GLC  G +  A    E   + G 
Sbjct: 562 IHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGK 621

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK 272
             ++  YN ++  + KDG +D A++ F  ME +    D+FTY+ ++  L +A R   A  
Sbjct: 622 KVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQN 681

Query: 273 LLLSCLKSGV 282
           +L    +SG 
Sbjct: 682 MLHKLAESGT 691



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 138/281 (49%), Gaps = 5/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN++++  C      +AL     +Q  G  P+ VTYN L+   C+ G L  AR
Sbjct: 200 LHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 259

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +   G AP   TY T++    R    K   +++ AM   G+  D + Y  + A  
Sbjct: 260 ALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGL 319

Query: 126 VKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            + G++ EA    ++M   G  L D+V+YNTL +   K      A  LL+EM ++G +  
Sbjct: 320 CQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKAT 379

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             TH I+I GLCK G ++GA   L  M   G   ++  YN ++    K G I  A  + +
Sbjct: 380 LVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMD 439

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            M  +    D+FT +++++NLCK KR   A  LL S  + G
Sbjct: 440 EMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRG 480



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 8/295 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  ++    K   ++ ALR++  + +    P + TYN LIKGL + GRL+ A   
Sbjct: 483 PDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDK 542

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L EL + G  P+  TY  I+    +    +   +  + M    +  D     T++     
Sbjct: 543 LNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCL 602

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L +A    E  V  G ++D+++YNTLI   CK+G ++ A     +ME +G + D +T
Sbjct: 603 NGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFT 662

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG-----FDSNLEAYNCIVD-RLGKDGKIDHAIN 241
           + +++  L +AG  + A+  L  + + G     F S L   + + +   GKD K +    
Sbjct: 663 YNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTEE--E 720

Query: 242 VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             E+ +   S  Y+ +V+ LC + +   A  +L   ++ G+ +  S    +++GL
Sbjct: 721 TVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEGL 775



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 139/303 (45%), Gaps = 4/303 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T N +L  LCK +  + A  + +   + GF+P+ V+Y  ++    K      A  +  
Sbjct: 450 TFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWD 509

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ +    P+  TY T++K   R  + K  ++ L+ +  KG   D   Y  +I A+ K G
Sbjct: 510 EMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEG 569

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L+ A  +  +MV +  + D+V+ NTL+N  C  GKL+ A  L +   ++G + D  T+ 
Sbjct: 570 DLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYN 629

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF----ES 245
            LI  +CK G++  A      M   G   +   YN ++  L + G+ + A N+     ES
Sbjct: 630 TLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAES 689

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             +  SF+   +  +          +K     +++       A   +V+GL  SG  +EA
Sbjct: 690 GTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEA 749

Query: 306 KKI 308
           K I
Sbjct: 750 KAI 752



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 126/276 (45%), Gaps = 7/276 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   LTP  +T+N ++ GL +      A+     L + G VP+  TYNI+I   CK G 
Sbjct: 511 MIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGD 570

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A     ++ ++   P+ +T  T+M     N K    L++  +   KG   D   Y T
Sbjct: 571 LENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNT 630

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G +  A  +   M   G+Q D  +YN +++   + G+ E A  +L ++ + G
Sbjct: 631 LIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESG 690

Query: 181 FECDKYTHTIL-IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                ++  +L    + +A + K A+   E +     DS  EAY  +V+ L   G+   A
Sbjct: 691 TLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQ-DSASEAYTKLVNGLCTSGQFKEA 749

Query: 240 INVFESMEVK----DSFTYSSMVHNLCK-AKRLPSA 270
             + + M  K    DS TY +++  L K  KRL  A
Sbjct: 750 KAILDEMMQKGMSVDSSTYITLMEGLVKRQKRLTHA 785



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 5/173 (2%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G L +A   +  M   G+  D V+YNTL+N +C++G L  A  LL  M+K G    + T+
Sbjct: 218 GTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTY 277

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             L+    + G IK A   +E M   GF+ +L  YN +   L + GK+D A  + + ME 
Sbjct: 278 NTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMER 337

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               + D  TY+++     K +    A +LL    + GV+        V+ GL
Sbjct: 338 LGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGL 390


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 146/279 (52%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G C     ++AL++F G+  +   P + TY  LI GLCK+G++  A  +
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + ++G  PN +TYT +++        +    +L  M+  G   + + +  +I A  K
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +++EA  ++  +V  GV+++ V Y +LI+  CK GK++AA  L+ +M  +GF  D ++
Sbjct: 330 REKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLC+   +  A L LE M + G  ++   Y  I+D L ++   +    +F+ M 
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 D  TY+  V + C+  R+  A  +++  +  GV
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +L+GL        A+ +F G++     P+   Y  ++ GLC+AGR   A  +L+E 
Sbjct: 144 TYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  PN + Y  ++       + +  L++   M     + +   Y  +I    K G++
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV 263

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A     +MV  G++ ++V+Y  LI   C EG L+ A+ LL  ME  G   + +T ++L
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           ID LCK   ++ A+L L  + K G   N   Y  ++D L K GKID A  + + M     
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V D+ +YSS++  LC+ K+L  A+ +L   ++ G++        ++D L         KK
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 308 IQSKI 312
           I  K+
Sbjct: 444 IFDKM 448



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 136/256 (53%), Gaps = 4/256 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+  +++GLCK+   + A+ +F  + + G  P +VTY  LI+G C  G L+ A  
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +  +G  PN  T++ ++    +  K +     L ++ +KG   +   Y ++I    
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLC 363

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++  A + M++M+++G   D  SY++LI+  C++ KL  A L+L++M ++G +    
Sbjct: 364 KTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPV 423

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+TI+ID L +    +G +   + M   G + ++  Y   V    ++G+++ A ++   M
Sbjct: 424 TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQM 483

Query: 247 EVKDSF----TYSSMV 258
             +  F    TY++++
Sbjct: 484 VDRGVFPNLVTYNTLI 499



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 133/279 (47%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  +  M++GLC+   T+ A  +      +GF P +V YN LI G C AG +  A  +
Sbjct: 175 PDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +  +  +PN  TYT ++    ++ K +  + + S M   G   +   Y  +I     
Sbjct: 235 FEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN 294

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A   +  M T+G+  +  +++ LI+  CK  K+E A L L  + K+G + ++  
Sbjct: 295 EGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVV 354

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LIDGLCK G I  A   ++ M   GF  +  +Y+ ++D L +  K+  A  + E M 
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            K       TY+ ++  L +        K+    + +G+
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGI 453



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++N  C       A +    L   G  P+   Y   + G C+AG L  A  +   +
Sbjct: 74  TYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLM 133

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G    A TYT ++         +  + +   M+      D   Y T++    + GR 
Sbjct: 134 PLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRT 193

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA   +E+ +++G + +IV YN LI+ YC  G++E A  + + M+      +  T+T L
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTEL 253

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I GLCK+G ++ A +    M + G + N+  Y  ++     +G +  A  +   ME    
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGL 313

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V + +T+S ++  LCK +++  A   L S +K GV++ +    +++DGL  +G    A +
Sbjct: 314 VPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADE 373

Query: 308 IQSKI 312
           +  K+
Sbjct: 374 LMQKM 378



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 6/259 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  ++ G C   +   A R+   ++ +G VP   T+++LI  LCK  +
Sbjct: 273 MVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREK 332

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+  L  L   G   N + YT+++    +  K     E++  M  +G+  D   Y +
Sbjct: 333 VEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSS 392

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    +  +L +AT  +E M+  G+Q   V+Y  +I+   +E   E    + D+M   G
Sbjct: 393 LIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATG 452

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+T+ +   C+ G ++ A   +  M   G   NL  YN ++      G +  A 
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAF 512

Query: 241 NVFESMEVK------DSFT 253
           + FE M  K      DS+T
Sbjct: 513 STFEVMVGKGWKPNEDSYT 531



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 118/245 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF+++++ LCK    + A      L K G     V Y  LI GLCK G++  A 
Sbjct: 313 LVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAAD 372

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++++   G  P+A +Y++++    R +K      +L  M  KG       Y  +I   
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           V+    +      ++M+  G+  DIV+Y   +  YC+EG++E A  ++ +M  +G   + 
Sbjct: 433 VREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNL 492

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G    G +  A    E M   G+  N ++Y  ++  + K    D+++++++ 
Sbjct: 493 VTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKI 552

Query: 246 MEVKD 250
            ++KD
Sbjct: 553 ADMKD 557



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 4/175 (2%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ME + +     ++ +Y TLIN YC  G + AA   L  +   G   D Y +T  + G C+
Sbjct: 60  MESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCR 119

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
           AG +  A      M   G       Y  ++  L   G +  A+ VF  M       D+  
Sbjct: 120 AGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHV 179

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           Y++MVH LC+A R   A  LL   + +G         A++DG  ++G    A K+
Sbjct: 180 YATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 3/150 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+ + +   C+    ++A  M   +   G  P LVTYN LI+G    G 
Sbjct: 448 MIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGL 507

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI--LSAMKR-KGYTFDGFG 117
           +  A    + +   G  PN  +YT +++   +       ++I  ++ MK  +   +D   
Sbjct: 508 VSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNYDEIV 567

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           +  +I   ++ G + E +  +  M   G Q
Sbjct: 568 WKILIYGLLQKGSVAEFSSLLSVMKEHGYQ 597


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + TF +++ G C+      AL +   ++K   VP  V+Y  +I GLC    L  A  +
Sbjct: 113 PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKL 172

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++  SG  PN + Y+T++       + +    +L  M   G   D F Y  +I+   K
Sbjct: 173 LEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 232

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+++EA+ Y+ ++   G++ D V++   I  Y K GK+  A    DEM   G   +   
Sbjct: 233 AGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 292

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LI+G  KAGN+  A     +++ +G   +++  +  +  L K+G++  A+ VF  ++
Sbjct: 293 YTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 352

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D FTYSS++   CK   +  A +L       G+        A+VDGL  SG  +
Sbjct: 353 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 412

Query: 304 EAKKI 308
            A+K+
Sbjct: 413 RARKL 417



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 3/303 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF   + G  K      A + F  +  HG +P    Y +LI G  KAG L  A 
Sbjct: 251 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 310

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + L   G  P+  T +  +    +N + +  L++ S +K KG   D F Y ++I+ F
Sbjct: 311 SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 370

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +++A +  ++M   G+  +I  YN L++  CK G ++ A  L D M ++G E D 
Sbjct: 371 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 430

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ +IDG CK+ N+  A      M   G   +   YN +V    K+G ++ A+N+F  
Sbjct: 431 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 490

Query: 246 MEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           M  K    + ++++++   CK+ ++  AS+L    +   +         V+D    +G  
Sbjct: 491 MLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKM 550

Query: 303 REA 305
            EA
Sbjct: 551 EEA 553



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 146/312 (46%), Gaps = 5/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C  + P    +N +++ L K    + A      +Q  G  P+ VT+   I G  K G+
Sbjct: 211 MSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGK 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     E+ D G  PN   YT ++   F+       L I   +   G   D      
Sbjct: 271 MTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSA 330

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I   +K GR++EA     ++   G+  D+ +Y++LI+ +CK+G++E A+ L DEM  +G
Sbjct: 331 FIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKG 390

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + + +  L+DGLCK+G+I+ AR   + M + G + +   Y+ ++D   K   +  A 
Sbjct: 391 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 450

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M  K     SF Y+++VH  CK   +  A  L    L+ G     S    ++DG 
Sbjct: 451 SLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN-TLIDGY 509

Query: 297 RHSGCRREAKKI 308
             S   +EA ++
Sbjct: 510 CKSCKIQEASQL 521



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 154/329 (46%), Gaps = 22/329 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++ +++G CK    + A  +   +   G  P +  YN L+ GLCK+G ++ AR
Sbjct: 356 LVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRAR 415

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + + G  P+++TY+T++    ++        +   M  KG     F Y  ++   
Sbjct: 416 KLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGC 475

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +++A +   +M+  G    + S+NTLI+ YCK  K++ A  L  EM  +    D 
Sbjct: 476 CKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDH 534

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNK--IGFDSNLEAYNCIVDRLGKDGKIDHAI--- 240
            T+T +ID  CKAG ++ A L  + M +  +  D+    +  +V +  K  ++ + +   
Sbjct: 535 VTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIY 594

Query: 241 ------NVFESMEVKDSFTYSSM-----VHNL-----CKAKRLPSASKLLLSCLKSGVRI 284
                 N+ E+ +++D      M     +H+L     CK + L  ASKLL    + G++ 
Sbjct: 595 AHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKP 654

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             +A   +V     +G   EA ++   ++
Sbjct: 655 SLAACSTLVRSFHEAGKMDEATRVFEGVK 683



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 57/310 (18%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++GLCK+     A ++F G+ + G  P+ VTY+ +I G CK+  +  A 
Sbjct: 391 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 450

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P++  Y  ++  C +    +  + +   M +KG+      + T+I  +
Sbjct: 451 SLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGY 509

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
            K  +++EA+   ++M+   +  D V+Y T+I+ +CK GK+E A LL  EM++       
Sbjct: 510 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 569

Query: 179 ----------QGFECDKYT-----------------------------------HTILID 193
                     +G + D+ T                                   H +LI 
Sbjct: 570 VFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLIT 629

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
            LCK  ++  A   L+ M ++G   +L A + +V    + GK+D A  VFE ++    V 
Sbjct: 630 ALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVP 689

Query: 250 DSFTYSSMVH 259
           D+ T   +V+
Sbjct: 690 DTTTLIDLVN 699



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 4/276 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + + G VP   TY I+  GLC+A R+  A+   +E+  +G  P+    + ++    R   
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
               L I   M   G   +   Y  +I    K G++++A + ++ M+T G + +  ++  
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI  YC+E  +  A  LLDEMEK+       ++  +I+GLC   ++  A   LE M   G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
              N+  Y+ ++     +G+I+ A  + + M       D F Y++++  L KA ++  AS
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             LL     G++       A + G   +G   EA K
Sbjct: 241 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK 276



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 96/213 (45%), Gaps = 17/213 (7%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T +FN +++G CK+     A ++F+ +     +P+ VTY  +I   CKAG++  A  + K
Sbjct: 499 TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFK 558

Query: 70  ELGD-----------------SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT 112
           E+ +                  G  P+ +TY  ++    +        ++   +  KG  
Sbjct: 559 EMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGML 618

Query: 113 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
             G  +  +I A  K   L EA+  +++M   G++  + + +TL+  + + GK++ A  +
Sbjct: 619 TKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRV 678

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            + ++  G   D  T   L++G     + + AR
Sbjct: 679 FEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDAR 711



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/142 (19%), Positives = 60/142 (42%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+ +++   CK      A ++   +   G + +   +++LI  LCK   
Sbjct: 577 MVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRED 636

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L E+G+ G  P+    +T+++      K      +   +K  G   D      
Sbjct: 637 LTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLID 696

Query: 121 VIAAFVKIGRLKEATDYMEQMV 142
           ++   +     ++A + ++Q+V
Sbjct: 697 LVNGNLNDTDSEDARNLIKQLV 718


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 141/271 (52%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF+ ++NGLC       A+  F  +   G+ P L TYN +IKG CK G+   A  +
Sbjct: 152 PDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGL 211

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++  +G  P+ + Y TI+    ++R     L+I S +K KG   D F Y  ++     
Sbjct: 212 LKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCN 271

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             + +EA+    +M++  +  D+V++N L++  CKEG L  A  ++  M ++G E +  T
Sbjct: 272 SDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYAT 331

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++G C    +  AR+  + M   G   N+ +YN +++   K  +ID A  +F+ M 
Sbjct: 332 YNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMS 391

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + ++F Y++++  LC+A R   A +L 
Sbjct: 392 FRGLIPNTFNYNTLISGLCQAGRHCEARELF 422



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 144/300 (48%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI++N   + +  D A  +   + K GF P+ VT++ LI GLC   +   A     E+ 
Sbjct: 122 FNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMV 181

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG+ PN  TY TI+K   +  K  + + +L  M + G   D   Y T+I    K   + 
Sbjct: 182 ASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVS 241

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D   ++   GV+ D+ +Y+ L++  C   + E A  L +EM       D  T  IL+
Sbjct: 242 EALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILV 301

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           D LCK G +  A+  ++ M + G + N   YN +++      K+  A  VF++M  K   
Sbjct: 302 DKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCM 361

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +  +Y+ +++  CKA+R+  A +L       G+         ++ GL  +G   EA+++
Sbjct: 362 PNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAREL 421



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 121/240 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++GLCK+R    AL +F  ++  G  P++ TY+IL+ GLC + +   A  +
Sbjct: 222 PDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASAL 281

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+      P+ +T+  ++    +         I+  M  KG   +   Y +++  +  
Sbjct: 282 FNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCL 341

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ EA    + M+T G   ++VSYN LIN YCK  +++ A  L DEM  +G   + + 
Sbjct: 342 QNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFN 401

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI GLC+AG    AR   + M   G   +L     ++D L K G +D+A+ +F +M+
Sbjct: 402 YNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQ 461



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 8/290 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+N ++ G CK   T  A+ + + + K G  P++V YN +I GLCK   
Sbjct: 180 MVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRL 239

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I  E+   G  P+  TY+ +M     + + +    + + M       D   +  
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G L EA   ++ M+  GV+ +  +YN+L+N YC + K+  A ++ D M  +G
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++ ILI+G CKA  I  AR   + M+  G   N   YN ++  L + G+   A 
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAR 419

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL----SCLKSGV 282
            +F+ M+ +    D  T + ++ +LCK   L +A +L      SCLK  +
Sbjct: 420 ELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNL 469



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 139/279 (49%), Gaps = 6/279 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC   F+ +L+ L + ++    L + + ++      ++  +NILI    +  R+  A  +
Sbjct: 82  PCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSV 141

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L ++   G  P+A+T+++++   CF + K+   +E    M   GY  +   Y T+I  F 
Sbjct: 142 LGKIIKLGFEPDAVTFSSLINGLCFED-KFARAMEFFDEMVASGYQPNLHTYNTIIKGFC 200

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KIG+   A   +++M   G + DIV YNT+I+  CK+  +  A  +  E++ +G   D +
Sbjct: 201 KIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVF 260

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++IL+ GLC +   + A      M  +    ++  +N +VD+L K+G +  A  + + M
Sbjct: 261 TYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIM 320

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             K    +  TY+S+++  C   ++  A  +  + +  G
Sbjct: 321 IEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 35/236 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFNI+++ LCK      A  + + + + G  P   TYN L+ G C   +
Sbjct: 285 MMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNK 344

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +   +   G  PN ++Y  ++                             GYC 
Sbjct: 345 VFEARMVFDAMITKGCMPNVVSYNILIN----------------------------GYC- 375

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                 K  R+ EA +  ++M   G+  +  +YNTLI+  C+ G+   A  L  +M+ QG
Sbjct: 376 ------KAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQG 429

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
              D  T TIL+D LCK G +  A      M       NL  Y+ ++  + K GKI
Sbjct: 430 CSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 4/192 (2%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++A V+I          +++    ++ D+  +N LIN + +  +++ A+ +L ++ K G
Sbjct: 90  LLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLG 149

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           FE D  T + LI+GLC       A    + M   G+  NL  YN I+    K GK   A+
Sbjct: 150 FEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAV 209

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + M+      D   Y++++  LCK + +  A  +       GVR        ++ GL
Sbjct: 210 GLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGL 269

Query: 297 RHSGCRREAKKI 308
            +S  + EA  +
Sbjct: 270 CNSDQKEEASAL 281


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 146/279 (52%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G C     ++AL++F G+  +   P + TY  LI GLCK+G++  A  +
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + ++G  PN +TYT +++        +    +L  M+  G   + + +  +I A  K
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +++EA  ++  +V  GV+++ V Y +LI+  CK GK++AA  L+ +M  +GF  D ++
Sbjct: 330 REKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLC+   +  A L LE M + G  ++   Y  I+D L ++   +    +F+ M 
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 D  TY+  V + C+  R+  A  +++  +  GV
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +L+GL        A+ +F G++     P+   Y  ++ GLC+AGR   A  +L+E 
Sbjct: 144 TYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  PN + Y  ++       + +  L++   M     + +   Y  +I    K G++
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV 263

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A     +MV  G++ ++V+Y  LI   C EG L+ A+ LL  ME  G   + +T ++L
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           ID LCK   ++ A+L L  + K G   N   Y  ++D L K GKID A  + + M     
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V D+ +YSS++  LC+ K+L  A+ +L   ++ G++        ++D L         KK
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 308 IQSKI 312
           I  K+
Sbjct: 444 IFDKM 448



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 136/256 (53%), Gaps = 4/256 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+  +++GLCK+   + A+ +F  + + G  P +VTY  LI+G C  G L+ A  
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +  +G  PN  T++ ++    +  K +     L ++ +KG   +   Y ++I    
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLC 363

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++  A + M++M+++G   D  SY++LI+  C++ KL  A L+L++M ++G +    
Sbjct: 364 KTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPV 423

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+TI+ID L +    +G +   + M   G + ++  Y   V    ++G+++ A ++   M
Sbjct: 424 TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQM 483

Query: 247 EVKDSF----TYSSMV 258
             +  F    TY++++
Sbjct: 484 VDRGVFPNLVTYNTLI 499



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 133/279 (47%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  +  M++GLC+   T+ A  +      +GF P +V YN LI G C AG +  A  +
Sbjct: 175 PDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +  +  +PN  TYT ++    ++ K +  + + S M   G   +   Y  +I     
Sbjct: 235 FEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN 294

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A   +  M T+G+  +  +++ LI+  CK  K+E A L L  + K+G + ++  
Sbjct: 295 EGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVV 354

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LIDGLCK G I  A   ++ M   GF  +  +Y+ ++D L +  K+  A  + E M 
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            K       TY+ ++  L +        K+    + +G+
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGI 453



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 136/305 (44%), Gaps = 16/305 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF+++++ LCK    + A      L K G     V Y  LI GLCK G++  A 
Sbjct: 313 LVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAAD 372

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++++   G  P+A +Y++++    R +K      +L  M  KG       Y  +I   
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           V+    +      ++M+  G+  DIV+Y   +  YC+EG++E A  ++ +M  +G   + 
Sbjct: 433 VREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNL 492

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G    G +  A    E M   G+  N ++Y  ++  + K    D+++++++ 
Sbjct: 493 VTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKI 552

Query: 246 MEVKD----------------SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            ++KD                +  YS  +  LC+  RL  A    +    + +   +   
Sbjct: 553 ADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVY 612

Query: 290 KAVVD 294
            +++D
Sbjct: 613 TSIID 617



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++N  C       A +    L   G  P+   Y   + G C+AG L  A  +   +
Sbjct: 74  TYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLM 133

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G    A TYT ++         +  + +   M+      D   Y T++    + GR 
Sbjct: 134 PLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRT 193

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA   +E+ +++G + +IV YN LI+ YC  G++E A  + + M+      +  T+T L
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTEL 253

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I GLCK+G ++ A +    M + G + N+  Y  ++     +G +  A  +   ME    
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGL 313

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V + +T+S ++  LCK +++  A   L S +K GV++ +    +++DGL  +G    A +
Sbjct: 314 VPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADE 373

Query: 308 IQSKI 312
           +  K+
Sbjct: 374 LMQKM 378



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 112/246 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  ++ G C   +   A R+   ++ +G VP   T+++LI  LCK  +
Sbjct: 273 MVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREK 332

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+  L  L   G   N + YT+++    +  K     E++  M  +G+  D   Y +
Sbjct: 333 VEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSS 392

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    +  +L +AT  +E M+  G+Q   V+Y  +I+   +E   E    + D+M   G
Sbjct: 393 LIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATG 452

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+T+ +   C+ G ++ A   +  M   G   NL  YN ++      G +  A 
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAF 512

Query: 241 NVFESM 246
           + FE M
Sbjct: 513 STFEVM 518



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 149/313 (47%), Gaps = 16/313 (5%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +  +++GLCK    D A  + + +   GFVP+  +Y+ LI GLC+  +L  A  +L+++
Sbjct: 354 VYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDM 413

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G   + +TYT I+    R    +   +I   M   G   D   Y   + ++ + GR+
Sbjct: 414 MEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRM 473

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A   + QMV  GV  ++V+YNTLI  Y   G +  A+   + M  +G++ ++ ++T+L
Sbjct: 474 EDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVL 533

Query: 192 ID------------GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           +              + K  ++K  ++ LE + +       + Y+C +  L +  +++ A
Sbjct: 534 LRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEA 593

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            + F  M+          Y+S++   C+ K L  A  LL S  KSG      + + ++  
Sbjct: 594 KHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISS 653

Query: 296 LRHSGCRREAKKI 308
           L   G  R AK++
Sbjct: 654 LCEGGNFRTAKEV 666



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 118/279 (42%), Gaps = 16/279 (5%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ I+++ L +   ++   ++F  +   G  P++VTY + ++  C+ GR+  A  ++ ++
Sbjct: 424 TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQM 483

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK---- 127
            D G  PN +TY T+++                 M  KG+  +   Y  ++   VK    
Sbjct: 484 VDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSS 543

Query: 128 --------IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
                   I  +K+    +E +    + L    Y+  I   C+  +LE A      M+  
Sbjct: 544 DNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNA 603

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                +  +T +ID  C+   +  A   L+ M K G+  +LE+Y  I+  L + G    A
Sbjct: 604 NLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTA 663

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
             VF  + +K    D   +  +++ L +   +   S LL
Sbjct: 664 KEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLL 702



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 4/175 (2%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ME + +     ++ +Y TLIN YC  G + AA   L  +   G   D Y +T  + G C+
Sbjct: 60  MESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCR 119

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
           AG +  A      M   G       Y  ++  L   G +  A+ VF  M       D+  
Sbjct: 120 AGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHV 179

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           Y++MVH LC+A R   A  LL   + +G         A++DG  ++G    A K+
Sbjct: 180 YATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 92/266 (34%), Gaps = 47/266 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+ + +   C+    ++A  M   +   G  P LVTYN LI+G    G 
Sbjct: 448 MIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGL 507

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI------------LSAMKR 108
           +  A    + +   G  PN  +YT +++   +       ++I            L  +  
Sbjct: 508 VSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITE 567

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
           +        Y   I    ++ RL+EA  +   M    +      Y ++I+  C+   L  
Sbjct: 568 RQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTD 627

Query: 169 AYLLLDEMEKQGF-----------------------------------ECDKYTHTILID 193
           A  LLD M K G+                                     D+    ILI 
Sbjct: 628 ALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIY 687

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSN 219
           GL + G++      L  M + G+  +
Sbjct: 688 GLLQKGSVAEFSSLLSVMKEHGYQPS 713


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 4/307 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N+++ G  +    + A  +   ++K G  P + TY+I+I GLC+ G    A  +L+
Sbjct: 418 TMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLE 477

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G  PNA  Y  ++    R   + L  E L  M R+  T D + Y ++I     +G
Sbjct: 478 QMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVG 537

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++ EA +Y ++M+  G Q +  +Y  LI+ Y   G LE A  LL +M   G   + + + 
Sbjct: 538 KMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYA 597

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            +++G  K+ N++     L+ M + G   +   Y  ++  L   G +  A++V   +E  
Sbjct: 598 QILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKN 657

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             V DS  Y S++   CKA  +  A  LL    K G+    S   A++DG   S     A
Sbjct: 658 GLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHA 717

Query: 306 KKIQSKI 312
           + I + I
Sbjct: 718 RNIFNSI 724



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 39/310 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++ GLC+    + A    + ++ +G VP+  TY  +I GLCK GR   A+ +L E+
Sbjct: 280 TYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEM 339

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  PN + Y+T++    R        +I+  M   G   +   Y  +I    K+GR+
Sbjct: 340 SCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRM 399

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A+  ++QM   G   D ++YN +I  + ++   E A+LLL+EM K G   + YT++I+
Sbjct: 400 GRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSII 459

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSN-------------------------------- 219
           I+GLC+ G  + A   LE M   G   N                                
Sbjct: 460 INGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENL 519

Query: 220 ---LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK 272
              L  YN ++  L   GK+D AI  ++ M  K    + FTY  ++H    A  L  A +
Sbjct: 520 TPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQ 579

Query: 273 LLLSCLKSGV 282
           LL   L SG+
Sbjct: 580 LLHQMLNSGL 589



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 140/317 (44%), Gaps = 11/317 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +LTP    +N ++ GL      D A+  +  + + GF P   TY  LI G   AG L  A
Sbjct: 518 NLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKA 577

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L ++ +SG  PN   Y  I++  F++   +     L +M  KG   D   Y  VI  
Sbjct: 578 EQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHN 637

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G ++ A   +  +  +G+  D + Y +LI+ +CK   +E A  LLDEM K+G E  
Sbjct: 638 LSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPG 697

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              +  LIDG CK+ +I  AR     +   G   N   Y  ++D   K G I  AI+++ 
Sbjct: 698 ISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYN 757

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       D+F YS +      +  L  A  +    +  G  I+ S      + L H  
Sbjct: 758 EMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISS-----FNTLVHGF 812

Query: 301 CRREAKKIQSKIRMAKI 317
           C+R   K+Q  ++   +
Sbjct: 813 CKR--GKLQETVKFLHV 827



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 4/277 (1%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
           V  ++L+    K GR+R    ++  + D G AP+      ++K   R     L  ++   
Sbjct: 174 VVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGF 233

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M+  G + D + Y T+I A+ K+  L+ A   +E+M   G  L++V+YNTLI   C+ G 
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           +E A+    EME  G   D +T+  +I+GLCK G    A+  L+ M+  G   N+  Y+ 
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353

Query: 226 IVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++D   + G  D A  + + M       +  TY +++  LCK  R+  AS++L    K G
Sbjct: 354 LIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIG 413

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
                     V++G      + EA  + +++R   IS
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGIS 450



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 129/252 (51%), Gaps = 4/252 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++  G  P++ TY+ LI+  CK   L +A+ +++E+ ++G + N +TY T++    R   
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            +        M+  G   DGF Y  +I    K GR  +A   +++M   G+  ++V Y+T
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+ + ++G  + A+ ++ EM   G + +K T+  LI GLCK G +  A   L+ M KIG
Sbjct: 354 LIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIG 413

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
           + ++   YN +++   +    + A  +   M       + +TYS +++ LC+      AS
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERAS 473

Query: 272 KLLLSCLKSGVR 283
            LL   +  G++
Sbjct: 474 GLLEQMIADGLK 485



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 23/262 (8%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P +  +  +++G CK    + A+ +   + K G  P +  YN LI G CK+  +  AR
Sbjct: 659 LVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHAR 718

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   +   G  PN +TYTT++    +    +  +++ + M  +G   D F Y  + A  
Sbjct: 719 NIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGC 778

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L++A    E+M+  G  + I S+NTL++ +CK GKL+     L  M  +      
Sbjct: 779 SNSGDLQQALFITEEMIARGYAI-ISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSL 837

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAINV 242
            T   ++ GL +AG +                   EA+   V+   K+      DH  ++
Sbjct: 838 LTVENIVIGLGEAGKLS------------------EAHTIFVELQQKNASHRDTDHLSSL 879

Query: 243 FESMEVKDSFTYSSMVHNLCKA 264
           F  M +        ++HN+ ++
Sbjct: 880 FTDM-INQGLVPLDVIHNMIQS 900



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 20/199 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +IC  L P   T+  +++G CK     +A+ ++  +   G  P+   Y++L  G   +G 
Sbjct: 724 IICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGD 783

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A +I +E+   G+A  +   T +   C R  K +  ++ L  M  K           
Sbjct: 784 LQQALFITEEMIARGYAIISSFNTLVHGFCKRG-KLQETVKFLHVMMDKDIVPSLLTVEN 842

Query: 121 VIAAFVKIGRLKEA----------------TDYMEQMVTDGVQLDIVSYNTLINL---YC 161
           ++    + G+L EA                TD++  + TD +   +V  + + N+   +C
Sbjct: 843 IVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVPLDVIHNMIQSHC 902

Query: 162 KEGKLEAAYLLLDEMEKQG 180
           K+G L+ A +L D +  +G
Sbjct: 903 KQGYLDKALMLHDALVAKG 921


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 155/301 (51%), Gaps = 9/301 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NIM+NGLCK    D ++ M+  ++K+   P+L T++ +I GL KAG    A  +
Sbjct: 253 PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKV 312

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ +SG +P+  TY  ++   FR  K     E+ + M  K    +   Y  +I   + 
Sbjct: 313 FQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMS-KNNCCNIVSYNMLIQGLLD 371

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++++A  Y + +   G++ D  +Y  LIN  CK G L  A  +L+E E +G + D + 
Sbjct: 372 NKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFA 431

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ ++ GLCK G ++ A   +  M K     N   +N +++   +  K++ AI+V   M+
Sbjct: 432 YSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMK 491

Query: 248 VKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            KD      +Y+++++ LCKA+R   A   L   L+ G++        ++DGL    CR 
Sbjct: 492 SKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGL----CRG 547

Query: 304 E 304
           E
Sbjct: 548 E 548



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 146/278 (52%), Gaps = 6/278 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++N+++ GL  N+  + A+  ++ L + G   +  TY +LI GLCK G L  A  IL+E
Sbjct: 360 VSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEE 419

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
             + G   +   Y++++    +    +  +E++  MK+     +   + ++I  +V+  +
Sbjct: 420 AENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFK 479

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L+EA   + +M +      +VSYNT+IN  CK  +   AYL L EM ++G + D  T+++
Sbjct: 480 LEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSL 539

Query: 191 LIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           LIDGLC+   +  A  L  + +NK     +L+ +N I+  L    K+D A+ +F  M   
Sbjct: 540 LIDGLCRGEKVDMALNLWHQCINK-RLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQV 598

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             V D  T+++++  L KA     A K+    L++G++
Sbjct: 599 NCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQ 636



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 154/316 (48%), Gaps = 5/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L+P   T+N ML+GL +    +    ++  + K+     +V+YN+LI+GL    +
Sbjct: 316 MIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-NIVSYNMLIQGLLDNKK 374

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    + L + G   ++ TY  ++    +N      L IL   + +G   D F Y +
Sbjct: 375 VEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSS 434

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G L++A + + QM  +  +L+   +N+LIN Y +  KLE A  +L EM+ + 
Sbjct: 435 MVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKD 494

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 ++  +I+GLCKA     A L L+ M + G   ++  Y+ ++D L +  K+D A+
Sbjct: 495 CAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMAL 554

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           N++     K    D   ++ ++H LC A+++  A ++     +            +++GL
Sbjct: 555 NLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGL 614

Query: 297 RHSGCRREAKKIQSKI 312
             +G   EA KI  +I
Sbjct: 615 YKAGDCVEALKIWDRI 630



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 144/306 (47%), Gaps = 4/306 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   +FN MLN   ++     A   F   Q  G  P L TYNILIK  CK  +    + 
Sbjct: 111 NPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKG 170

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  + ++G  P+ ++Y T++    ++      +E+   M  +G   D   Y  +I  F+
Sbjct: 171 LLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFL 230

Query: 127 KIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           + G   +A +  ++++T+  V   + +YN +IN  CK GKL+ +  + + M+K     D 
Sbjct: 231 RKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDL 290

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T + +I GL KAGN   A    + M + G   ++  YN ++  L + GK++    ++  
Sbjct: 291 FTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNV 350

Query: 246 MEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           M   +     +Y+ ++  L   K++  A        + G++   +    +++GL  +G  
Sbjct: 351 MSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYL 410

Query: 303 REAKKI 308
            +A +I
Sbjct: 411 NKALRI 416



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 149/330 (45%), Gaps = 41/330 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+NI++   CK R  +    +   + ++G  P++++Y  LI  L K+G L  A 
Sbjct: 145 MSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAV 204

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKY----------------------------- 96
            +  E+   G  P+ + Y  ++    R   +                             
Sbjct: 205 ELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMING 264

Query: 97  --KLG-----LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             KLG     +E+ + MK+   + D F + ++I    K G    A    ++M+  G+  D
Sbjct: 265 LCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPD 324

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           + +YN +++   + GKL   + L + M K    C+  ++ +LI GL     ++ A  + +
Sbjct: 325 VRTYNAMLSGLFRTGKLNKCFELWNVMSKNNC-CNIVSYNMLIQGLLDNKKVEQAICYWQ 383

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            +++ G  ++   Y  +++ L K+G ++ A+ + E  E +    D+F YSSMVH LCK  
Sbjct: 384 LLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKG 443

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            L  A +L+    K+  ++      ++++G
Sbjct: 444 MLEQAVELIHQMKKNRRKLNSHVFNSLING 473



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 138/301 (45%), Gaps = 44/301 (14%)

Query: 9   CTATFNIMLNGL---CKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRTA 64
           CT + ++ L+ +    K    D AL +F+ +    G  P + ++N ++    ++ + R A
Sbjct: 74  CTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREA 133

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
                    +G +PN  TY  ++K   + R+++ G  +L+ M   G   D   Y T+I A
Sbjct: 134 ELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINA 193

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-EC 183
             K G L +A +  ++M   GV  D++ YN LI+ + ++G    A    +E+ K+   E 
Sbjct: 194 LAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKA----NEIWKRLLTES 249

Query: 184 DKY----THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             Y    T+ I+I+GLCK G +               D ++E +N    R+ K+ K    
Sbjct: 250 SVYPSVETYNIMINGLCKLGKL---------------DESMEMWN----RMKKNEK---- 286

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
                     D FT+SSM+H L KA    +A K+    ++SG+        A++ GL  +
Sbjct: 287 --------SPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRT 338

Query: 300 G 300
           G
Sbjct: 339 G 339



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   ++N ++NGLCK     +A    + + + G  P+++TY++LI GLC+  ++  A
Sbjct: 494 DCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMA 553

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  +  +    P+   +  I+      +K  + LEI + M++     D   + T++  
Sbjct: 554 LNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEG 613

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G   EA    ++++  G+Q DI+SYN      C   ++  A   L +   +G   +
Sbjct: 614 LYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPN 673

Query: 185 KYTHTILI 192
             T  +L+
Sbjct: 674 APTWNVLV 681



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T N ++ GL K      AL+++  + + G  P++++YNI  KGLC   R+  A  
Sbjct: 601 VPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIE 660

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLE 101
            L +  D G  PNA T+  +++    ++   +Y L  E
Sbjct: 661 FLYDALDRGILPNAPTWNVLVRAVVDDKPLMEYALNTE 698


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 129/256 (50%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    +   R+ + +Q  G  P++ TY++LI GLCK  ++    
Sbjct: 171 LRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXN 230

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 231 ELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGL 290

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 291 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDD 350

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 351 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKE 410

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D +  S + +N+
Sbjct: 411 MQ-RDGYVPSVVTYNV 425



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 138/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N L+ G  K G L     + K + 
Sbjct: 143 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQ 202

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M   G   +G  + T+I    K GR+ 
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVD 262

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+V+YNTLI   CK+G L+ A  L+DEM  +G + DK T+T LI
Sbjct: 263 LAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 322

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G+++ A  +   M K     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 323 DGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 382

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +  TY+ +++  CK   + + SKL+    + G
Sbjct: 383 PEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 415



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 119/228 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+   +F  +   G VP  VT+  LI G CK GR
Sbjct: 201 MQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGR 260

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ +TY T++    +    K   +++  M  KG   D   Y T
Sbjct: 261 VDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 320

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y  +M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 321 LIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 380

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + +  T+T++I+  CK G++      ++ M + G+  ++  YN +++
Sbjct: 381 LKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMN 428



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 104/194 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +      P+LVTYN LI GLCK G 
Sbjct: 236 MLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGD 295

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A+ ++ E+   G  P+ ITYTT++    +    +   E    M ++    D   Y  
Sbjct: 296 LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTA 355

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ +I +Y  +IN +CK+G +     L+ EM++ G
Sbjct: 356 LISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 415

Query: 181 FECDKYTHTILIDG 194
           +     T+ +L++G
Sbjct: 416 YVPSVVTYNVLMNG 429



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 39/273 (14%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+   CK G +R A+ +   +   G  P+ +++ T+M            
Sbjct: 135 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMN----------- 183

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
                                    ++K+G L E     + M   GVQ D+ +Y+ LIN 
Sbjct: 184 ------------------------GYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLING 219

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CKE K++    L DEM   G   +  T T LIDG CK G +  A    + M       +
Sbjct: 220 LCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 279

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
           L  YN ++  L K G +  A ++ + M +K    D  TY++++   CK   L +A +   
Sbjct: 280 LVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRX 339

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 340 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 372


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 5/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++G CK    + A  +   +++ G  P L  +  L+      GR   A  +
Sbjct: 501 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 560

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G AP+ I YT+++   F   +      +  +M  KG   D   Y T+I  F K
Sbjct: 561 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 620

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG ++ A + +E M   GV  D  +YN+L++ Y K  +++ A+ + D M   G + +  T
Sbjct: 621 IGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVT 680

Query: 188 HTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
             +L+ GL K G    A  L  E + K      L +Y  ++D LGK G++  A + F+ M
Sbjct: 681 FNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEM 740

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
                + +  TY+S++++L KA R+P A KL+   +K GV     A  A++ GL  S
Sbjct: 741 IDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS 797



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 143/280 (51%), Gaps = 9/280 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P     NI+LNGLCK R  D A+ +F  +   G  P +V+YN +I GL    ++  A 
Sbjct: 16  LMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAY 75

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS-AMKRKGYTFDGFGYCTVIAA 124
                + D+G  P+ I +TT++    +  + ++G  +L+ A+KR  +  D F Y +VI  
Sbjct: 76  KFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR--FRPDVFLYTSVIHG 133

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K G L      +E+M+  G   D  +Y  LI+  CK G+++ AY L + M K G   D
Sbjct: 134 YCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGD 193

Query: 185 KYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
             T   LI+ L   G +  A  L+ E + + G++  LE  + ++  L K GK+D A  ++
Sbjct: 194 YVTFMTLIEALSNHGKLDEACELYREMIER-GYEPYLEVQDSLIFALCKAGKVDEANEIY 252

Query: 244 ESMEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLK 279
           +++  K   T    Y+S++   CK  R+    KLLL  ++
Sbjct: 253 QTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVE 292



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 136/298 (45%), Gaps = 4/298 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +  +++GL K    ++ L+ F  +     VP   TY ++I GLCKA  L  A  
Sbjct: 395 SPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACK 454

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +++   G  P+ ITYTT++    +  K     ++L  M  KG       Y +++  F 
Sbjct: 455 VFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFC 514

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+  + EA + + QM   G +  +  + +L++ Y  +G+ E AY +L EM  +G   D  
Sbjct: 515 KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVI 574

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +T LID L   G +  AR   + M + G   +   Y  I+    K G ++ A  + E M
Sbjct: 575 LYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELM 634

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                  D F Y+S++    K +R+  A  +    + SG++        ++ GL   G
Sbjct: 635 AKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG 692



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 4/288 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++  ++ GL  ++  D A  +F  L+  G  P +V Y  +I GL KAGR+       +++
Sbjct: 365 SYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDM 424

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             S   P   TYT ++    + +      ++   M +KG   D   Y T+I  F K  ++
Sbjct: 425 SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKM 484

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA   ++ M+T G +   V+Y ++++ +CK   +  A  ++ +M ++G E   +  T L
Sbjct: 485 DEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSL 544

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +      G  + A   L  M   G   ++  Y  ++D L   G++  A +VF+SM  K  
Sbjct: 545 LSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGC 604

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             D+ TY +++ N  K   + +A ++L    KSGV     A  +++DG
Sbjct: 605 APDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDG 652



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 40/296 (13%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           + AL   + +   G +P++V  NI++ GLCKA ++  A  +  E+   G  P  ++Y   
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYN-- 59

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                                            TVI+    I ++ EA  +   M+ +G 
Sbjct: 60  ---------------------------------TVISGLASIDKMDEAYKFFNSMIDNGC 86

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + D++++ TLI+ +CK G+ +  ++LL++  K+ F  D + +T +I G CKAG++     
Sbjct: 87  EPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFK 145

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
            LE M   G   +  AY  ++D L K G++D A  +FE M     + D  T+ +++  L 
Sbjct: 146 ILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALS 205

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
              +L  A +L    ++ G       Q +++  L  +G   EA +I   +   K++
Sbjct: 206 NHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVA 261



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 130/305 (42%), Gaps = 45/305 (14%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N +++G CK    D+ L++   + +    P++ TYNIL+ G  +A RL  A  + K L 
Sbjct: 267 YNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLS 326

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PNA TYTTI++  +  ++ +                D   Y TVI       R+ 
Sbjct: 327 SYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE------ALDVISYTTVIKGLADSKRID 380

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA +  E++ T G   ++V+Y  +I+   K G++E      ++M        + T+T++I
Sbjct: 381 EACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVI 440

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
           DGLCKA  +                                     A  VFE M     V
Sbjct: 441 DGLCKAQMLP-----------------------------------DACKVFEQMVQKGCV 465

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D+ TY++++    KA ++  A KLL   L  G         ++V G        EAK++
Sbjct: 466 PDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEV 525

Query: 309 QSKIR 313
            +++R
Sbjct: 526 IAQMR 530



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 127/275 (46%), Gaps = 36/275 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L+        + A ++   +   G  P+++ Y  LI  L   GR+  AR +
Sbjct: 536 PGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHV 595

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + + G AP+A+TY TI++   +    +   EIL  M + G   D F Y +++  +VK
Sbjct: 596 FDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVK 655

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKY 186
           + R+ +A    ++MV  G++ + V++N L++   K+GK + A+ L  EM EK        
Sbjct: 656 LERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLV 715

Query: 187 THTILIDGL-----------------------------------CKAGNIKGARLHLEYM 211
           ++TILIDGL                                    KAG I  A+  +E M
Sbjct: 716 SYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 775

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            K+G + +++AY+ ++  L     +D A +VF+ M
Sbjct: 776 VKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM 810



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 135/312 (43%), Gaps = 10/312 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   T+NI++ G  +    D+AL +F+ L  +G  P   TY  +I+GL  A R
Sbjct: 290 MVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQR 349

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+    E      A + I+YTT++K    +++     E+   +K  G + +   Y  
Sbjct: 350 MEEAKAFFDE------ALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTA 403

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI   +K GR+++     E M          +Y  +I+  CK   L  A  + ++M ++G
Sbjct: 404 VIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKG 463

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+T LIDG  KA  +  AR  L+ M   G +     Y  IV    K   I+ A 
Sbjct: 464 CVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAK 523

Query: 241 NVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V   M  +      F ++S++       R   A ++L      G         +++D L
Sbjct: 524 EVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLL 583

Query: 297 RHSGCRREAKKI 308
             +G   EA+ +
Sbjct: 584 FSTGRVPEARHV 595



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 91/200 (45%), Gaps = 36/200 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAG 59
           M+   + P   TFN++++GL K+  TD A  +F+  L+K    P LV+Y ILI GL KAG
Sbjct: 669 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAG 728

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+  A    +E+ D G  P   TYT++                                 
Sbjct: 729 RVSEAFSQFQEMIDRGIIPECHTYTSL--------------------------------- 755

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
             I +  K GR+ EA   +E MV  GV  D+ +Y+ LI        ++ A+ +  EM K+
Sbjct: 756 --IYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKR 813

Query: 180 GFECDKYTHTILIDGLCKAG 199
           G   ++ T+ +L  G   AG
Sbjct: 814 GCAPNEVTYKVLRRGFRAAG 833



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA D +++M T G+  D+V+ N ++N  CK  K++ A  L  EM   G E    ++  
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-------IDHAINVF 243
           +I GL     +  A      M   G + ++ A+  ++    K G+       ++ A+  F
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D F Y+S++H  CKA  L +  K+L   L +G     +A   ++D L   G   
Sbjct: 121 RP----DVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVD 176

Query: 304 EAKKIQSKIR 313
           EA ++  ++R
Sbjct: 177 EAYELFERMR 186



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 1/145 (0%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   ++ I+++GL K      A   F+ +   G +PE  TY  LI  L KAGR+  A
Sbjct: 709 EVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEA 768

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +++++   G  P+   Y+ ++     +       ++   M ++G   +   Y  +   
Sbjct: 769 KKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRG 828

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLD 149
           F   GR  +  + ++Q  + GV ++
Sbjct: 829 FRAAGRALD-LEAVKQHFSQGVAME 852


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 154/305 (50%), Gaps = 5/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NI + GLC+      A+R+  G++ +  VP++VTYN LI+GLCK    + A   L+ +
Sbjct: 226 TYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRM 284

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+  TY TI+    +    +   E+L     KG+  D   YC++I      G +
Sbjct: 285 MNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 344

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A +   +    G++ DIV YN+L+   C +G +  A  +++EM ++G   D  T+ I+
Sbjct: 345 ERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 404

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I+GLCK GNI  A + +      G+  ++  +N ++D   K  K+D A+ + E M     
Sbjct: 405 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 464

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+ TY+S+++ LCKA ++   ++     +  G          +++    S    EA K
Sbjct: 465 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 524

Query: 308 IQSKI 312
           +  K+
Sbjct: 525 VIVKM 529



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 138/281 (49%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N ++ GLCK      A+   R +   G +P+  TYN +I G CK   ++ A  
Sbjct: 255 VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 314

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK+    G  P+ +TY +++         +  LE+ +  + KG   D   Y +++    
Sbjct: 315 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 374

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G +  A   M +M  +G   DI +YN +IN  CK G +  A +++++   +G+  D +
Sbjct: 375 LQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF 434

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   LIDG CK   +  A   +E M + G   +   YN +++ L K GK++     F+ M
Sbjct: 435 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 494

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +K    +  TY+ ++ N C++ ++  ASK+++   + G+ 
Sbjct: 495 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 535



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 150/301 (49%), Gaps = 1/301 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN +++G CK    D+AL++   + ++G  P+ +TYN ++ GLCKAG++      
Sbjct: 431 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 490

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  PN ITY  +++   R+ K +   +++  M ++G   D   + T+I  F +
Sbjct: 491 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCR 550

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A    +++   G      ++NTLI  +  +  +  A  + DEM  +G   D YT
Sbjct: 551 NGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYT 610

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + +LIDG CK  N+  A +HL  M K GF  ++  +  +++ L  + ++  A+ +   M 
Sbjct: 611 YRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIM- 669

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           VK       +   L   K+  +A K+L+  L     I     + + +G+R +   R+ + 
Sbjct: 670 VKIGVVPEVVDTILNADKKEIAAPKILVEDLMKKGHISYPTYEVLHEGVRDNKLTRKHRM 729

Query: 308 I 308
           +
Sbjct: 730 L 730



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 138/280 (49%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N ++ GLC      +AL++   + + G  P++ TYNI+I GLCK G +  A 
Sbjct: 359 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 418

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ +    G+ P+  T+ T++    +  K    L+++  M   G   D   Y +V+   
Sbjct: 419 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGL 478

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++ E  +  ++M+  G   + ++YN LI  +C+  K+E A  ++ +M ++G   D 
Sbjct: 479 CKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDA 538

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +   LI G C+ G+++GA L  + + + G+ +  + +N ++        +  A  +F+ 
Sbjct: 539 VSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDE 598

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           M  K    DS+TY  ++   CK   +  A   L+  +K G
Sbjct: 599 MLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 638



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 104/210 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T+N +LNGLCK    +     F+ +   G  P  +TYNILI+  C++ ++  A 
Sbjct: 464 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEAS 523

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ ++   G  P+A+++ T++    RN   +    +   ++ KGY+     + T+I AF
Sbjct: 524 KVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 583

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                +  A    ++M++ G + D  +Y  LI+  CK   ++ AY+ L EM K+GF    
Sbjct: 584 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSM 643

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            T   +I+ L     +  A   +  M KIG
Sbjct: 644 STFGRVINSLTVNHRVFQAVGIIHIMVKIG 673



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 133/326 (40%), Gaps = 38/326 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    +N +++ L    Y D A +++  +   G  P+L T+ I ++  C   R   A  
Sbjct: 85  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALR 144

Query: 67  ILKELGDSGHA-------------------------------PNAITYTTIMKC-CFRNR 94
           +L+ L   G                                 PN   +  ++   C R  
Sbjct: 145 LLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGD 204

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
             + GL +L  + ++G + + F Y   I    + GRL EA   ++ M    V  D+V+YN
Sbjct: 205 VLEAGL-LLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYN 262

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           TLI   CK+   + A   L  M  QG   D +T+  +IDG CK   ++ A   L+     
Sbjct: 263 TLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK 322

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           GF  +   Y  +++ L  +G ++ A+ +F   + K    D   Y+S+V  LC    +  A
Sbjct: 323 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 382

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGL 296
            +++    + G          V++GL
Sbjct: 383 LQVMNEMAEEGCHPDIQTYNIVINGL 408



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 123/273 (45%), Gaps = 9/273 (3%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A+  F  +      P    YN ++  L  A     A  +   +  +G +P+  T+T  +
Sbjct: 71  DAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRL 130

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           +      +  + L +L A+  +G       YCTV+      G   +A    +QM+   V 
Sbjct: 131 RSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVF 186

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            ++ ++N +++  CK G +  A LLL ++ ++G   + +T+ I I GLC+AG +  A   
Sbjct: 187 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 246

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           ++ M       ++  YN ++  L K      A++    M     + D FTY++++   CK
Sbjct: 247 VDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 305

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              +  A++LL   +  G    +    ++++GL
Sbjct: 306 ISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 338



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 12/213 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NI++   C++   + A ++   + + G  P+ V++N LI G C+ G 
Sbjct: 494 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 553

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + ++L + G++  A T+ T++          +  +I   M  KG+  D + Y  
Sbjct: 554 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 613

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K   +  A  ++ +M+  G    + ++  +IN      ++  A  ++  M K G
Sbjct: 614 LIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIG 673

Query: 181 ---------FECDK---YTHTILIDGLCKAGNI 201
                       DK       IL++ L K G+I
Sbjct: 674 VVPEVVDTILNADKKEIAAPKILVEDLMKKGHI 706



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 35/192 (18%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y   I A+ + GRL++A D  E+M          +YN +++        + A+ +   M 
Sbjct: 56  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 115

Query: 178 KQGFECDKYTHTI-------------------------------LIDGLCKAGNIKGARL 206
             G   D +THTI                               ++ GL   G+   AR 
Sbjct: 116 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQ 175

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVKDSFTYSSMVHNLC 262
             + M       NL A+N ++  L K G +  A      V +     + FTY+  +  LC
Sbjct: 176 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 235

Query: 263 KAKRLPSASKLL 274
           +A RLP A +L+
Sbjct: 236 EAGRLPEAVRLV 247


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 134/250 (53%), Gaps = 4/250 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           +++   +P++V+YN +I GLCK  RL  A  +L E+  S   PN+ TY  +M    +  +
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            +  + +L  MKRKG   D   Y T+I+ F   G L       ++M+  G+  ++V Y+ 
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LIN +CK+G    A  +L  M ++G + D YT+T +I GLCK G  + A    + M + G
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKG 180

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
            + +   YN +++ L K+G I  A  +FE+M  K    +  +Y++++  LC   +L  A 
Sbjct: 181 EEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAM 240

Query: 272 KLLLSCLKSG 281
           KL  S L+ G
Sbjct: 241 KLFSSLLEDG 250



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 141/283 (49%), Gaps = 6/283 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   ++N ++NGLCK +  + A+ +   ++     P   TY IL+ GLCK GR+  A
Sbjct: 5   NILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEA 64

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+   G   + + Y+T++           G  +   M  KG + +   Y  +I  
Sbjct: 65  MRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLING 124

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K G  +EAT  +  M   G+Q D+ +Y  +I   CK+G+   A  L D M ++G E  
Sbjct: 125 FCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPS 184

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ +LI+GLCK G I  A    E M + G    + +YN ++  L  +GK+D A+ +F 
Sbjct: 185 TVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFS 244

Query: 245 SM------EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           S+         D  T+++++  LCK  RL  A ++  + ++ G
Sbjct: 245 SLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG 287



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 156/317 (49%), Gaps = 6/317 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+ I+++GLCK    + A+R+   +++ G   ++V Y+ LI G C  G L   + +
Sbjct: 43  PNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKAL 102

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ + G +PN + Y+ ++    +   ++    +L  M  +G   D + Y  +I    K
Sbjct: 103 FDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCK 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR ++A D  + M   G +   V+YN LIN  CKEG +  A+ + + M ++G   +  +
Sbjct: 163 DGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVS 222

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +  LI GLC  G +  A      + + G   + ++  +N ++  L K+G++D A+ ++++
Sbjct: 223 YNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDT 282

Query: 246 MEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  + S    FT   ++    K+  +  A +L     K G+    +    ++DG      
Sbjct: 283 MIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHM 342

Query: 302 RREAKKIQSKIRMAKIS 318
              AK + S+++++ +S
Sbjct: 343 LNFAKGLFSRMKISGLS 359



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 6/314 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P    ++ ++NG CK      A  +   + + G  P++ TY  +I GLCK GR R A 
Sbjct: 111 ISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKAL 170

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + + G  P+ +TY  ++    +        +I   M  KG   +   Y T+I   
Sbjct: 171 DLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGL 230

Query: 126 VKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              G+L EA      ++ DG  V+ D++++NT+I   CKEG+L+ A  + D M ++G   
Sbjct: 231 CNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFG 290

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + +T  ILI    K+G I  A    + ++K+G   +   Y+ ++D   K   ++ A  +F
Sbjct: 291 NLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLF 350

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
             M++       F Y++++ +LCK   L  A +L     +S       +   ++DG   +
Sbjct: 351 SRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKA 410

Query: 300 GCRREAKKIQSKIR 313
           G    AK++ + ++
Sbjct: 411 GDIHSAKELLNDMQ 424



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 151/312 (48%), Gaps = 9/312 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N+++NGLCK     +A ++F  + + G   E+V+YN LI GLC  G+L  A  +
Sbjct: 183 PSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKL 242

Query: 68  LKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              L + G+   P+ IT+ T+++   +  +    +EI   M  +G   + F    +I  +
Sbjct: 243 FSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEY 302

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K G + +A +  +++   G+     +Y+ +I+ +CK   L  A  L   M+  G     
Sbjct: 303 IKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTL 362

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + +  L+  LCK  +++ AR   + M +   + +  ++N ++D   K G I  A  +   
Sbjct: 363 FDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLND 422

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      D++TYSS ++ L K  ++  A     S + SG+        +++ G    G 
Sbjct: 423 MQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGF---GL 479

Query: 302 RREAKKIQSKIR 313
             E +++ + +R
Sbjct: 480 NDEIEEVINLLR 491



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 6/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  M+ GLCK+     AL +F  + + G  P  VTYN+LI GLCK G +  A 
Sbjct: 146 IQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAF 205

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIA 123
            I + + + G     ++Y T++     N K    +++ S++   G     D   + TVI 
Sbjct: 206 KIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQ 265

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GRL +A +  + M+  G   ++ + + LI  Y K G ++ A  L   + K G   
Sbjct: 266 GLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVP 325

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              T++++IDG CK   +  A+     M   G    L  YN ++  L K+  ++ A  +F
Sbjct: 326 SSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLF 385

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M+      D+ +++ M+    KA  + SA +LL    + G+        + ++ L   
Sbjct: 386 QEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKL 445

Query: 300 GCRREAK 306
           G   EAK
Sbjct: 446 GQMEEAK 452



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 117/241 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN ++ GLCK    D A+ ++  + + G    L T +ILI    K+G +  A 
Sbjct: 253 VEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAM 312

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K +   G  P++ TY+ ++    +         + S MK  G +   F Y T++A+ 
Sbjct: 313 ELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASL 372

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   L++A    ++M     + D +S+N +I+   K G + +A  LL++M++ G   D 
Sbjct: 373 CKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDA 432

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT++  I+ L K G ++ A+   + M   G   +   Y+ ++   G + +I+  IN+   
Sbjct: 433 YTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQ 492

Query: 246 M 246
           M
Sbjct: 493 M 493



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 1/187 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P + T+++M++G CK    + A  +F  ++  G  P L  YN L+  LCK   L  AR
Sbjct: 323 LVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQAR 382

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ +S   P+ I++  ++    +        E+L+ M++ G T D + Y + I   
Sbjct: 383 RLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRL 442

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD- 184
            K+G+++EA    + M+  G+  D   Y++LI  +    ++E    LL +M   G   D 
Sbjct: 443 SKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDL 502

Query: 185 KYTHTIL 191
           + T++IL
Sbjct: 503 EITNSIL 509


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 149/317 (47%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NIM+  +CK      A  +F  ++K G  P++VTYN LI G  K G 
Sbjct: 123 MVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGL 182

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  +  + +E+   G  P+ ITY  ++    + +      E    MK K    +   Y T
Sbjct: 183 LDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYST 242

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K G ++ A  +   M   G+  +  +Y++LI+  CK G L  A++L DEM ++ 
Sbjct: 243 LIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEH 302

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T L+DGLC+ G +  A      M K G   NL+AY  ++    K   +D A+
Sbjct: 303 VDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAM 362

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M  K    D   + ++V  LC   +L     ++    +SG+         ++D  
Sbjct: 363 ELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAY 422

Query: 297 RHSGCRREAKKIQSKIR 313
             +G R EA  +  ++R
Sbjct: 423 FKAGNRTEAINLLEEMR 439



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 147/347 (42%), Gaps = 39/347 (11%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE-------------------- 44
           DL P   +++ +++ LCK      A++ F  + + G +P                     
Sbjct: 232 DLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEA 291

Query: 45  ---------------LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
                          +VTY  L+ GLC+ G +  A  + + +G +G  PN   YT ++  
Sbjct: 292 FMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHG 351

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             + R     +E+ + M+ K    D   + T++       +L+E    M +M   G+  +
Sbjct: 352 HIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGAN 411

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
            V Y TL++ Y K G    A  LL+EM   G E    T   LIDGLCK G ++ A  +  
Sbjct: 412 PVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFG 471

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M       N+  Y  ++D L K+  I  A  +F+ M+    + D   Y++M+    K  
Sbjct: 472 RMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHG 531

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
               A  +    ++ G+ +   A  ++V GL   G  ++A+K  +++
Sbjct: 532 NFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEM 578



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 136/293 (46%), Gaps = 4/293 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ + + L +    + A + F  + K   +P+  + N  +  L KAG    +R 
Sbjct: 59  VPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRD 118

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             +++  +G AP   TY  ++    +         +   MK+ G T D   Y T+I  + 
Sbjct: 119 FFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYG 178

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KIG L E+    E+M   G + D+++YN LIN +CK   +  A+    EM+ +  + +  
Sbjct: 179 KIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVI 238

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +++ LID LCK G ++ A      M ++G   N   Y+ ++D   K G +  A  + + M
Sbjct: 239 SYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEM 298

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +    +  TY++++  LC+   +  A +L  +  K+GV     A  A++ G
Sbjct: 299 LQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHG 351



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 82/172 (47%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF  +++GLCK      A+  F  +  H   P +  Y  LI GLCK   +  A+ +  
Sbjct: 447 VVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFD 506

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ D    P+ I YT ++    ++  ++  L + + M   G   D + Y +++    + G
Sbjct: 507 EMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCG 566

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           ++++A  ++ +M+  G+  D      L+  + + G ++ A  L +E+ ++G 
Sbjct: 567 QVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGL 618



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 90/221 (40%), Gaps = 39/221 (17%)

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G    + D+   MV  G+   + +YN +I   CKEG +  A  L ++M+K G   D  
Sbjct: 109 KAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIV 168

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIG------------------------------- 215
           T+  LIDG  K G +  +    E M  +G                               
Sbjct: 169 TYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREM 228

Query: 216 ----FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
                  N+ +Y+ ++D L K+G +  AI  F  M     + + FTYSS++   CKA  L
Sbjct: 229 KDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNL 288

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             A  L    L+  V +       ++DGL   G   EA+++
Sbjct: 289 GEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEEL 329



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 5/199 (2%)

Query: 115 GFG-YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           GFG +  + +  V++G L+ A     +M    V     S N  ++   K G+ + +    
Sbjct: 61  GFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFF 120

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            +M   G     +T+ I+I  +CK G++  AR   E M K+G   ++  YN ++D  GK 
Sbjct: 121 RDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKI 180

Query: 234 GKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G +D ++ +FE M+      D  TY++++++ CK K +  A +         ++    + 
Sbjct: 181 GLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISY 240

Query: 290 KAVVDGLRHSGCRREAKKI 308
             ++D L   G  + A K 
Sbjct: 241 STLIDALCKEGMMQMAIKF 259



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 82/176 (46%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+ +   ++  G    +VT+  LI GLCK G ++ A +    + D    PN   YT ++ 
Sbjct: 431 AINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALID 490

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              +N       ++   M+ K    D   Y  +I   +K G  +EA +   +M+  G++L
Sbjct: 491 GLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIEL 550

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           D+ +Y +L+    + G+++ A   L EM  +G   D+   T L+    + GNI  A
Sbjct: 551 DLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEA 606


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 139/294 (47%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +LNG CK      AL +F  L++ G  P ++TYNI I G C+ G L  AR
Sbjct: 341 LLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEAR 400

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+G+ G  PN  TYT +MK         +  E    M  KG   D F Y T I A 
Sbjct: 401 ILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAE 460

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           + +G +  A +  E ++ +G+  D V+YN LI+  CK G L+ A  L  +M   G + D 
Sbjct: 461 LILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDC 520

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI   C+ G ++ AR     M   G   +   +  I+    + G +  A   F  
Sbjct: 521 ITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRK 580

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M  +    +  TY+ ++H LC+  R   AS      L+ G+   K     ++DG
Sbjct: 581 MLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDG 634



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 4/217 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL +   L   G   + VTYNILI GLCK G L+ A+ +  ++  +G  P+ ITYT ++ 
Sbjct: 469 ALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIH 528

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                   +   +I + M   G       +  +I A+ + G L  A  +  +M+ +GV+ 
Sbjct: 529 AHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 588

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLH 207
           + ++YN LI+  C+ G+ + A     EM ++G   +KYT+T+LIDG CK GN + A R +
Sbjct: 589 NEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFY 648

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            E M++ G   +   +  +V   G DG + H I   +
Sbjct: 649 FE-MHQNGIHPDYLTHKALVK--GFDGHVHHTIEYLD 682



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 155/349 (44%), Gaps = 52/349 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRT 63
           + P   T+N +L+   K    D    + + ++  G   +P  VTYN++I GL + G L  
Sbjct: 200 IEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEE 259

Query: 64  ARWILKELGDSGHAPNAITYTTIM-----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           A  +++ +  S  A ++ TY  ++     + C + + Y L LE    M+ +G       Y
Sbjct: 260 AAELVEGMRLSKKA-SSFTYNPLITGLLARGCVK-KVYDLQLE----MENEGIMPTVVTY 313

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +I   ++ G ++ A     +M   G+  D+++YN+L+N YCK G L+ A LL  ++ +
Sbjct: 314 NAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRR 373

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG----------------------- 215
            G      T+ I IDG C+ G+++ AR+  E M + G                       
Sbjct: 374 AGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAM 433

Query: 216 ----FDSNLE--------AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVH 259
               FD  L         AYN  +      G I  A+ + E + ++    D+ TY+ ++H
Sbjct: 434 AREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIH 493

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            LCK   L  A +L +  + +G++        ++      G  REA+KI
Sbjct: 494 GLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKI 542



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 51/342 (14%)

Query: 12  TFNIMLNGL----CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           T+N ++ GL    C  +  D  L M    +  G +P +VTYN +I GL ++G +  A+  
Sbjct: 277 TYNPLITGLLARGCVKKVYDLQLEM----ENEGIMPTVVTYNAMIHGLLQSGLVEAAQVK 332

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+   G  P+ ITY +++    +    K  L +   ++R G       Y   I  + +
Sbjct: 333 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCR 392

Query: 128 IGRLKE-----------------------------------ATDYMEQMVTDGVQLDIVS 152
           +G L+E                                   A ++ ++M++ G+Q D  +
Sbjct: 393 LGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFA 452

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YNT I      G +  A  L + +  +G   D  T+ ILI GLCK GN+K A+     M 
Sbjct: 453 YNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMV 512

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLP 268
             G   +   Y C++    + G +  A  +F +M     +  + T++ ++H  C+   L 
Sbjct: 513 SNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLY 572

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           SA       L+ GV       +   + L H+ CR    ++ S
Sbjct: 573 SAYGWFRKMLEEGVE----PNEITYNVLIHALCRMGRTQLAS 610



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 121/292 (41%), Gaps = 39/292 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI ++G C+    + A  +   + + G +P + TY IL+KG      L  AR
Sbjct: 376 LAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAR 435

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+   G  P+   Y T +            LE+   +  +G + D   Y  +I   
Sbjct: 436 EFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGL 495

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL-------------------------- 159
            K G LK+A +   +MV++G+Q D ++Y  LI+                           
Sbjct: 496 CKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSA 555

Query: 160 ---------YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                    YC+ G L +AY    +M ++G E ++ T+ +LI  LC+ G  + A  H   
Sbjct: 556 VTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHE 615

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMV 258
           M + G  +N   Y  ++D   K G  + A+  +  M       D  T+ ++V
Sbjct: 616 MLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALV 667



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 3/209 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGD--SGHAPNAITYTTIMKCCFRNRKYK 97
           G  P +VTYN L+    K GR      +LKE+    SG  PN +TY  ++    R    +
Sbjct: 199 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 258

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
              E++  M R       F Y  +I   +  G +K+  D   +M  +G+   +V+YN +I
Sbjct: 259 EAAELVEGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMI 317

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +   + G +EAA +   EM   G   D  T+  L++G CKAGN+K A L    + + G  
Sbjct: 318 HGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLA 377

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESM 246
             +  YN  +D   + G ++ A  + E M
Sbjct: 378 PTVLTYNIRIDGYCRLGDLEEARILKEEM 406



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 73/157 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  +++  C+      A ++F  +   G +P  VT+ ++I   C+ G 
Sbjct: 511 MVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGN 570

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A    +++ + G  PN ITY  ++    R  + +L       M  +G   + + Y  
Sbjct: 571 LYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTL 630

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           +I    K+G  ++A  +  +M  +G+  D +++  L+
Sbjct: 631 LIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALV 667



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N++++ LC+   T  A   F  + + G V    TY +LI G CK G    A   
Sbjct: 588 PNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRF 647

Query: 68  LKELGDSGHAPNAITYTTIMK 88
             E+  +G  P+ +T+  ++K
Sbjct: 648 YFEMHQNGIHPDYLTHKALVK 668



 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 77/249 (30%)

Query: 140 QMVTDGVQLD-----------------------------------IVSYNTLINLYCKEG 164
           +M + GV  D                                   IV+YNTL++ + KEG
Sbjct: 159 EMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEG 218

Query: 165 KLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGAR----------------- 205
           + +   +LL EME +G  C  +  T+ ++I GL + G+++ A                  
Sbjct: 219 RKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTY 278

Query: 206 ------------------LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
                             L LE  N+ G    +  YN ++  L + G ++ A   F  M 
Sbjct: 279 NPLITGLLARGCVKKVYDLQLEMENE-GIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMR 337

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D  TY+S+++  CKA  L  A  L     ++G+          +DG    G   
Sbjct: 338 AMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLE 397

Query: 304 EAKKIQSKI 312
           EA+ ++ ++
Sbjct: 398 EARILKEEM 406


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 39/309 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NI++ GLC+    + AL     + + G  P+++TYN LI   CKAG +  A  ++ E+
Sbjct: 387 THNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEM 446

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK---- 127
             SG   +  T  T++    + ++Y+   E+L A  ++G+  D   Y TV+AA+ K    
Sbjct: 447 VRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKP 506

Query: 128 -------------------------------IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
                                          +G+L EA D + +++  G+  D  +YN +
Sbjct: 507 EPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNII 566

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           I+ YCKEG LE A+   ++M +  F+ D  T   L++GLC  G ++ A    E   + G 
Sbjct: 567 IHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGK 626

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK 272
             ++  YN ++  L KD  +D A+  F  MEV+    D FTY+ ++  L +A R   A K
Sbjct: 627 KVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQK 686

Query: 273 LLLSCLKSG 281
           +L    +SG
Sbjct: 687 MLHKLNESG 695



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 147/316 (46%), Gaps = 42/316 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDN--ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           P     N +L+ L ++  T    +L  F  L      P   T+N+L+   C  G L  A 
Sbjct: 170 PSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADAL 229

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L ++   G +P+A+TY T++    R         +L+ MK++G       Y T+++A+
Sbjct: 230 STLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAY 289

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG----- 180
            ++G +K+ATD +E M   G + D+ +YN L    C+ GK++ A+ L DEME+ G     
Sbjct: 290 ARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPD 349

Query: 181 -----------FECDK--------------------YTHTILIDGLCKAGNIKGARLHLE 209
                      F+C +                     TH I++ GLC+ G ++ A   LE
Sbjct: 350 VVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLE 409

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            M + G   ++  YN ++D   K G +  A  + + M       D+FT +++++NLCK K
Sbjct: 410 MMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEK 469

Query: 266 RLPSASKLLLSCLKSG 281
           R   A +LL +  + G
Sbjct: 470 RYEEAEELLRAPPQRG 485



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 139/332 (41%), Gaps = 50/332 (15%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV----------------------- 46
           T T N +L  LCK +  + A  + R   + GFVP+ V                       
Sbjct: 455 TFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWD 514

Query: 47  ------------TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 94
                       TYN LIKGL   G+L  A   L EL + G  P+  TY  I+    +  
Sbjct: 515 EMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEG 574

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
             +   +  + M    +  D     T++      GRL++A    E  V  G ++D+++YN
Sbjct: 575 DLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYN 634

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           TLI   CK+  ++ A     +ME +G + D +T+ +L+  L +AG    A+  L  +N+ 
Sbjct: 635 TLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNES 694

Query: 215 G----------FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA 264
           G            S++EA        GKD ++   I    + +  D  +Y+  +  LC  
Sbjct: 695 GKLYGRFFYPSIKSSVEAVET-----GKDPEVKSDIESVGNTQGDDQESYNKYIKELCIG 749

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +L  A  +L   ++ G+ +  S    +++GL
Sbjct: 750 GQLKEAKAVLDEMMQKGMSVDNSTYITLMEGL 781



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 36/228 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+++  CK    + A +    + ++ F P++VT N L+ GLC  GRL  A 
Sbjct: 556 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAM 615

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +   + G   + ITY T+++   ++      L   + M+ +G   D F Y  +++A 
Sbjct: 616 KLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSAL 675

Query: 126 VKIGRLKEATDYMEQMVTDG-------------------------VQLDIVS-------- 152
            + GR  EA   + ++   G                         V+ DI S        
Sbjct: 676 SEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDD 735

Query: 153 ---YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
              YN  I   C  G+L+ A  +LDEM ++G   D  T+  L++GL K
Sbjct: 736 QESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIK 783



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G L +A   + +M   G+  D V+YNTL+N +C++G L  A  LL  M+K+G    + T+
Sbjct: 223 GTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATY 282

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             L+    + G IK A   +E M   GF+ +L  YN +   L + GK+D A  + + ME 
Sbjct: 283 NTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQ 342

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY+++V    K +R   A  LL    + GV+        +V GL   G   
Sbjct: 343 LGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLE 402

Query: 304 EA 305
           EA
Sbjct: 403 EA 404



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++  LCK+   D ALR F  ++  G  P++ TYN+L+  L +AGR   A+ +L +L
Sbjct: 632 TYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKL 691

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCTVIAAFVKIG 129
            +SG       Y +I K      +     E+ S ++  G T   D   Y   I      G
Sbjct: 692 NESGKLYGRFFYPSI-KSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGG 750

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           +LKEA   +++M+  G+ +D  +Y TL+    K  K
Sbjct: 751 QLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQK 786


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 125/250 (50%), Gaps = 1/250 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D  ++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 MEVKDSFTYS 255
           M+ +D +  S
Sbjct: 407 MQ-RDGYVPS 415



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   ++   M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 137/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +J+ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + + M+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+   + M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYVPSVVT 418


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 154/306 (50%), Gaps = 6/306 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + TF +++ G C+      AL +   ++K   VP  V+Y  +I GLC    L  A  +
Sbjct: 312 PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKL 371

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++  SG  PN + Y+T++       + +    +L  M   G   D F Y  +I+   K
Sbjct: 372 LEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 431

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+++EA+ Y+ ++   G++ D V++   I  Y K GK+  A    DEM   G   +   
Sbjct: 432 AGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 491

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LI+G  KAGN+  A     +++ +G   +++  +  +  L K+G++  A+ VF  ++
Sbjct: 492 YTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 551

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLS-CLKSGVRILKSAQKAVVDGLRHSGCR 302
               V D FTYSS++   CK   +  A +L    CLK G+        A+VDGL  SG  
Sbjct: 552 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK-GIAPNIFIYNALVDGLCKSGDI 610

Query: 303 REAKKI 308
           + A+K+
Sbjct: 611 QRARKL 616



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 3/303 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF   + G  K      A + F  +  HG +P    Y +LI G  KAG L  A 
Sbjct: 450 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 509

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + L   G  P+  T +  +    +N + +  L++ S +K KG   D F Y ++I+ F
Sbjct: 510 SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 569

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +++A +  ++M   G+  +I  YN L++  CK G ++ A  L D M ++G E D 
Sbjct: 570 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 629

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ +IDG CK+ N+  A      M   G   +   YN +V    K+G ++ A+N+F  
Sbjct: 630 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 689

Query: 246 MEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           M  K    + ++++++   CK+ ++  AS+L    +   +         V+D    +G  
Sbjct: 690 MLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKM 749

Query: 303 REA 305
            EA
Sbjct: 750 EEA 752



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 146/312 (46%), Gaps = 5/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C  + P    +N +++ L K    + A      +Q  G  P+ VT+   I G  K G+
Sbjct: 410 MSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGK 469

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     E+ D G  PN   YT ++   F+       L I   +   G   D      
Sbjct: 470 MTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSA 529

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I   +K GR++EA     ++   G+  D+ +Y++LI+ +CK+G++E A+ L DEM  +G
Sbjct: 530 FIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKG 589

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + + +  L+DGLCK+G+I+ AR   + M + G + +   Y+ ++D   K   +  A 
Sbjct: 590 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 649

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M  K     SF Y+++VH  CK   +  A  L    L+ G     S    ++DG 
Sbjct: 650 SLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN-TLIDGY 708

Query: 297 RHSGCRREAKKI 308
             S   +EA ++
Sbjct: 709 CKSCKIQEASQL 720



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 5/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++GLCK+     A ++F G+ + G  P+ VTY+ +I G CK+  +  A 
Sbjct: 590 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 649

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P++  Y  ++  C +    +  + +   M +KG+      + T+I  +
Sbjct: 650 SLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGY 708

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +++EA+   ++M+   +  D V+Y T+I+ +CK GK+E A LL  EM+++    D 
Sbjct: 709 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 768

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T L+ G  K G         E M   G   +   Y  ++    K+  +  A  + + 
Sbjct: 769 VTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDE 828

Query: 246 MEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           +  K   T    +  ++  LCK + L  ASKLL    + G++   +A   +V     +G 
Sbjct: 829 VVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGK 888

Query: 302 RREAKKIQSKIR 313
             EA ++   ++
Sbjct: 889 MDEATRVFEGVK 900



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 132/258 (51%), Gaps = 5/258 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P +  +N +++G CK    + A+ +FR + + GF   L ++N LI G CK+ +++ A 
Sbjct: 660 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEAS 718

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+      P+ +TYTT++    +  K +    +   M+ +    D   Y +++  +
Sbjct: 719 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGY 778

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G+  E     E+MV  GV+ D V+Y  +I  +CKE  L  A+ L DE+  +G     
Sbjct: 779 NKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKG 838

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             H +LI  LCK  ++  A   L+ M ++G   +L A + +V    + GK+D A  VFE 
Sbjct: 839 TIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEG 898

Query: 246 ME----VKDSFTYSSMVH 259
           ++    V D+ T   +V+
Sbjct: 899 VKSLGLVPDTTTLIDLVN 916



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 129/279 (46%), Gaps = 4/279 (1%)

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
            R + + G VP   TY I+  GLC+A R+  A+   +E+  +G  P+    + ++    R
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
                  L I   M   G   +   Y  +I    K G++++A + ++ M+T G + +  +
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 316

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +  LI  YC+E  +  A  LLDEMEK+       ++  +I+GLC   ++  A   LE M 
Sbjct: 317 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 376

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G   N+  Y+ ++     +G+I+ A  + + M       D F Y++++  L KA ++ 
Sbjct: 377 FSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKME 436

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
            AS  LL     G++       A + G   +G   EA K
Sbjct: 437 EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK 475



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 93/205 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  +++  CK    + A  +F+ +Q+   + + VTY  L+ G  K G+
Sbjct: 724 MIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQ 783

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 + +++   G  P+ +TY  ++    +        ++   +  KG    G  +  
Sbjct: 784 SSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDL 843

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K   L EA+  +++M   G++  + + +TL+  + + GK++ A  + + ++  G
Sbjct: 844 LITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLG 903

Query: 181 FECDKYTHTILIDGLCKAGNIKGAR 205
              D  T   L++G     + + AR
Sbjct: 904 LVPDTTTLIDLVNGNLNDTDSEDAR 928


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 156/328 (47%), Gaps = 23/328 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    + ++L+ LC     D A+++   ++  G +P+ VTYN  + GLCK GR+  A 
Sbjct: 238 IMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAF 297

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L  L D G A     Y+ ++   F+ R++  G      M  +  + D   Y  +I   
Sbjct: 298 QRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGC 357

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GR+++A  +++ M   G   D   YNT++ + C  G LE A+ L  EM +     D 
Sbjct: 358 AEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDS 417

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T TI+I GLCK G +  A    + M + G D  +  YN ++D   ++G+++ A  +F  
Sbjct: 418 TTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHK 477

Query: 246 ME-----------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
           ME                 V DS +   +VH++C++ ++  A KLL S + SGV      
Sbjct: 478 MEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVT 537

Query: 289 QKAVVDGLRHSGCRREAKKIQSKIRMAK 316
              +++GL    C+  A+ +   +R+ K
Sbjct: 538 YNTLINGL----CK--ARNLDGAVRLFK 559



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 117/245 (47%), Gaps = 26/245 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L   + T  IM+ GLCK    D A+++F  + +HG  P ++TYN LI G  + GR
Sbjct: 408 MLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGR 467

Query: 61  LRTARWILKELGDSGHAPNAITYTTI--MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           L  AR +  ++ + G+ P+     T+   + C      KL                    
Sbjct: 468 LEEARMLFHKM-EMGNNPSLFLRLTLGANQVCDSESLRKL-------------------- 506

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
              +    + G++ +A   +  ++  GV  D+V+YNTLIN  CK   L+ A  L  E++ 
Sbjct: 507 ---VHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQL 563

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D+ T+  LIDGL +A     A +  + + + G   +L  YN ++  L +  K+  
Sbjct: 564 KGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQ 623

Query: 239 AINVF 243
           AIN++
Sbjct: 624 AINLW 628



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 4/285 (1%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A++ F  + +    P    YN ++K L  +G +  A  +   +  +G APN  TY  +M
Sbjct: 155 DAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLM 214

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
               +       L++   M  +G   +   Y  ++++    G++ EA   +  M   G  
Sbjct: 215 DGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCL 274

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D V+YN  ++  CK G++  A+  L  ++  GF      ++ LIDGL +A        +
Sbjct: 275 PDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGY 334

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
            + M +     ++  Y  ++    + G+I+ A++  + M+    V D+F Y++++  LC 
Sbjct: 335 YKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCD 394

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              L  A  L    L++ + +  + Q  ++ GL   G   EA +I
Sbjct: 395 HGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQI 439



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 4/232 (1%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            +  L+     AGR   A      + +    P A  Y TI+K    +    L L + + M
Sbjct: 139 AFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRM 198

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
              G   +   Y  ++    K G   +A    ++M+  G+  ++  Y  L++  C  GK+
Sbjct: 199 VAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKI 258

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A  LL  M+ +G   D+ T+   + GLCK G +  A   L  +   GF   L+ Y+C+
Sbjct: 259 DEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCL 318

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           +D L +  + D     +++M  +    D   Y+ M+    +A R+  A   L
Sbjct: 319 IDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I   + P   T+N ++NGLCK R  D A+R+F+ LQ  G  P+ +TY  LI GL +A R
Sbjct: 526 IIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHR 585

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + + +  SG +P+   Y ++M+   R +K    + +      K Y F       
Sbjct: 586 ENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFP------ 639

Query: 121 VIAAFVKIGRLKEATD-YMEQMVTDGVQLD----IVSYNT----LINLYCKEGKLEAAYL 171
            + + V     KE  D  ++  V + +++D     +S N     LI L C+  + + A  
Sbjct: 640 -VESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIWLIGL-CQVRRTDDALR 697

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           +   +++ G +       +LI+ LC   N+  A
Sbjct: 698 IFHTLQEFGIDITPACCALLINYLCWDRNLNAA 730



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +++ +C++     A ++ R +   G VP++VTYN LI GLCKA  L  A  + KEL   G
Sbjct: 506 LVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            +P+ ITY T++    R  +    + +   + + G +     Y +++ +  ++ +L +A 
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 136 ----DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
               DY+ +     V+ ++++     +   ++G L+     L +++++        +TI 
Sbjct: 626 NLWLDYLPKKYNFPVESEVLAN---AHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIW 682

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + GLC+      A      + + G D        +++ L  D  ++ A+++ 
Sbjct: 683 LIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVDIM 734


>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
 gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
          Length = 553

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 144/279 (51%), Gaps = 7/279 (2%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +  D   CT    +     C+ R  D A  + R +  +G  P++VTY+ LI GLC AG++
Sbjct: 133 VAPDAAACTVLVGVYA---CRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQV 189

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  +L  + + G  PNA TYT I+       +      +L+ M   G+      Y  +
Sbjct: 190 AEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVL 249

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           + A  K+G  +E    +E+    G   D+++Y++ ++  CK G+++ ++ L+D+M   G 
Sbjct: 250 VEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGL 309

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           +  + T  IL+DG+C++     A+  LE   ++G+D+N+  YN ++ +L  + +    + 
Sbjct: 310 QPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVK 369

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLS 276
           +F  M  K    +S+T++ +VH+LCK  RL  A  LL S
Sbjct: 370 LFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLRS 408



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 7/237 (2%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF--VKIGRLKEAT 135
           P+A  +TT+        +    L +L AM   G   D    CTV+      ++ R   A 
Sbjct: 100 PDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDA-AACTVLVGVYACRLRRFDAAY 158

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + +  MV +GV  D+V+Y+TLI+  C  G++  A  +LD M ++G + + +T+T ++   
Sbjct: 159 EVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAY 218

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           C  G I  A+  L  M   GF  +   YN +V+ L K G  +    + E    K    D 
Sbjct: 219 CTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDV 278

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            TYSS +  LCKA R+  +  L+   L +G++  +     ++DG+  S     AK++
Sbjct: 279 ITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRL 335



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 65/266 (24%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T++  ++GLCK    D +  +   +  +G  P  VT NIL+ G+C++     A+ 
Sbjct: 275 TPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKR 334

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+   + G   N + Y T+M+      ++   +++ + M +KG   + + +  V+ +  
Sbjct: 335 LLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLC 394

Query: 127 KIGRLKEATDYME--------------------------------QMVTDGVQLDIVSYN 154
           K+GRL +A   +                                 QM+  G+  + ++Y+
Sbjct: 395 KLGRLHKALFLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYS 454

Query: 155 TLINLYCKEGK----------------LEAAYL----------LLDEMEK-------QGF 181
            +I+  C+E K                  +A+L          +L ++         QGF
Sbjct: 455 LVIDCLCREEKFLVALCCFYQSLEDDFFPSAFLSIIRGLIVGGMLGQLHTLIGCVLGQGF 514

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLH 207
             + Y +  LI  LCK G  +   ++
Sbjct: 515 IIEVYIYQELIKALCKNGYCQSVEMY 540



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 5/159 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P + TFNI+++ LCK      AL + R  +   FV  ++TYN LI+ L  +G      
Sbjct: 379 IAPNSWTFNIVVHSLCKLGRLHKALFLLRSKE---FVATVITYNTLIRHLSISGEGNEVC 435

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++ + G APN ITY+ ++ C  R  K+ + L          +    F   ++I   
Sbjct: 436 LLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSAF--LSIIRGL 493

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           +  G L +    +  ++  G  +++  Y  LI   CK G
Sbjct: 494 IVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNG 532


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 4/269 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P + TF  +++GL +    D+A  ++  +     +P +V Y  LI+   K GR      
Sbjct: 479 SPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHK 538

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           I KE+   G +P+ +   + M C F+  + + G  +   +K +G   D   Y  +I   V
Sbjct: 539 IYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLV 598

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G  +E      +M   G+ LD+++YNT+I+ +CK GK++ AY LL+EM+ +G +    
Sbjct: 599 KAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVV 658

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  ++DGL K   +  A +  E    IG D N+  Y+ ++D  GK G+ID A  + E +
Sbjct: 659 TYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEEL 718

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSAS 271
             K    +S+T++ ++  L KA+ +  A 
Sbjct: 719 MQKGLTPNSYTWNCLLDALVKAEEIDEAQ 747



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 155/321 (48%), Gaps = 12/321 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P    +  ++    K    ++  ++++ +   G  P+L+  N  +  + KAG 
Sbjct: 508 MLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGE 567

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           +   R + +E+   G  P+  +Y+ ++    K  F    YKL  E    MK +G   D  
Sbjct: 568 VEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYE----MKEQGLHLDVL 623

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y TVI  F K G++ +A   +E+M T G+Q  +V+Y ++++   K  +L+ AY+L +E 
Sbjct: 624 AYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEA 683

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           +  G + +   ++ LIDG  K G I  A L LE + + G   N   +NC++D L K  +I
Sbjct: 684 KSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEI 743

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           D A   F++M+      ++ TYS M++ LC  ++   A        K G++        +
Sbjct: 744 DEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTM 803

Query: 293 VDGLRHSGCRREAKKIQSKIR 313
           + GL  +G   EA+ +  + +
Sbjct: 804 IAGLAKAGNVMEARGLFDRFK 824



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 154/320 (48%), Gaps = 20/320 (6%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P     N  ++ + K    +    +F  ++  G VP++ +Y+ILI GL KAG  R    
Sbjct: 549 SPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYK 608

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  E+ + G   + + Y T++    ++ K     ++L  MK KG       Y +V+    
Sbjct: 609 LFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLA 668

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KI RL EA    E+  + GV L++V Y++LI+ + K G+++ AYL+L+E+ ++G   + Y
Sbjct: 669 KIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSY 728

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   L+D L KA  I  A++  + M  +    N   Y+ +++ L    K + A   ++ M
Sbjct: 729 TWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEM 788

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLL-----------LSCLKSGVRILKSAQKA 291
           + +    ++ TY++M+  L KA  +  A  L             +C  + +  L SA KA
Sbjct: 789 QKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKA 848

Query: 292 -----VVDGLRHSGCRREAK 306
                V +  R  GCR  +K
Sbjct: 849 MDAYIVFEETRLKGCRVNSK 868



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 5/272 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F  ++    +    D AL +   ++ + F  +LV YN+ I    K G++  A     E+ 
Sbjct: 241 FTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMK 300

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P+ +TYTT++    + R+    +E+   +         + Y T+I  +   G+  
Sbjct: 301 AQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFD 360

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +E+    G    +++YN ++    ++GK+E A  + DEM +Q    +  T+ ILI
Sbjct: 361 EAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM-RQDAAPNLTTYNILI 419

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           D LCKAG ++ A    + M + G   N+   N ++DRL K  K+D A ++F  ++ K   
Sbjct: 420 DMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCS 479

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            DS T+ S++  L +  R+  A  L    L S
Sbjct: 480 PDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDS 511



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 7/266 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N+ ++   K    D A + F  ++  G VP+ VTY  LI  LCKA RL  A  + +EL 
Sbjct: 276 YNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELD 335

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            +   P    Y T++       K+     +L   KRKG       Y  ++    + G+++
Sbjct: 336 LNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVE 395

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA    ++M  D    ++ +YN LI++ CK G+LEAA  + D M++ G   +  T  I+I
Sbjct: 396 EALRIHDEMRQDAAP-NLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMI 454

Query: 193 DGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           D LCKA  +  A  + L   +K+    +   +  ++D LG+ G++D A +++E M    +
Sbjct: 455 DRLCKAQKLDEACSIFLGLDHKVC-SPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQ 513

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKL 273
           + +   Y+S++ N  K  R     K+
Sbjct: 514 IPNVVVYTSLIQNFFKCGRKEDGHKI 539



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 127/271 (46%), Gaps = 5/271 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++    K+     A  +   ++K  F P    Y  LI  L  A R      +  ++ + G
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIG 233

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           +  N   +TT+++   R  +    L +L  MK   +T D   Y   I  F K+G++  A 
Sbjct: 234 YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAW 293

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-KQGFECDKYTHTILIDG 194
            +  +M   G+  D V+Y TLI + CK  +L+ A  L +E++  +   C  Y +  +I G
Sbjct: 294 KFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPC-VYAYNTMIMG 352

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDS 251
              AG    A   LE   + G   ++ AYNCI+  LG+ GK++ A+ + + M      + 
Sbjct: 353 YGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNL 412

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            TY+ ++  LCKA  L +A K+  +  ++G+
Sbjct: 413 TTYNILIDMLCKAGELEAALKVQDTMKEAGL 443



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 100/244 (40%), Gaps = 35/244 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++GL K    D A  +F   +  G    +V Y+ LI G  K GR+  A 
Sbjct: 653 LQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAY 712

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL+EL   G  PN+ T+  ++                                    A 
Sbjct: 713 LILEELMQKGLTPNSYTWNCLLD-----------------------------------AL 737

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK   + EA    + M       + ++Y+ +IN  C   K   A++   EM+KQG + + 
Sbjct: 738 VKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNN 797

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T +I GL KAGN+  AR   +     G   +   YN +++ L    K   A  VFE 
Sbjct: 798 ITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEE 857

Query: 246 MEVK 249
             +K
Sbjct: 858 TRLK 861



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 123/292 (42%), Gaps = 9/292 (3%)

Query: 29  ALRMFRGLQK---HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           A + FR +++       PE+  YN  +  + +   L     IL+E+  +G   +      
Sbjct: 116 AFQYFRWVERKTQQAHCPEV--YNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVE 173

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    ++ K K    ++  M++  +      Y T+I A     R         QM   G
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIG 233

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            + ++  + TL+ ++ +EG+++AA  LLDEM+   F  D   + + ID   K G +  A 
Sbjct: 234 YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAW 293

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNL 261
                M   G   +   Y  ++  L K  ++D A+ +FE +++  S    + Y++M+   
Sbjct: 294 KFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGY 353

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             A +   A  LL    + G      A   ++  L   G   EA +I  ++R
Sbjct: 354 GSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR 405


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 151/317 (47%), Gaps = 4/317 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M++G  K    ++  R++  + +HG  P ++TYN+L+ GLC+AGR+    
Sbjct: 219 VVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETA 278

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+      P+  TY+ +     R    +  L +     +KG     +    ++   
Sbjct: 279 AVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGL 338

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++ +A + ++ +V  G+    V YNTLIN YC+ G LE A+ +  +M+ +    D 
Sbjct: 339 CKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDH 398

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+GL K   I  A   +  M K G + ++E +N ++D  G+ G+++    +   
Sbjct: 399 ITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSD 458

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ K    +  +Y S+V+  CK  ++  A  +L       V        A++D     G 
Sbjct: 459 MQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGS 518

Query: 302 RREAKKIQSKIRMAKIS 318
             +A  +  K++ + + 
Sbjct: 519 TDQAFMLAEKMKSSGVP 535



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 140/298 (46%), Gaps = 5/298 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARW 66
           P T T+N  +         D A+ M R +   G   P   +YN++I GL KAG    A  
Sbjct: 150 PDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVK 209

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  E+ +    PN ITY T++    +    + G  + S M R G   +   Y  +++   
Sbjct: 210 LFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLC 269

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR+ E    +++M +  +  D  +Y+ L + + + G  +    L +E  K+G +   Y
Sbjct: 270 RAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAY 329

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T +IL++GLCK G I  A   L+ +   G       YN +++   + G ++ A ++F+ M
Sbjct: 330 TCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQM 389

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           + +    D  TY+++++ L K +R+  A  L++   K+GV         ++D    +G
Sbjct: 390 KSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAG 447



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 139/301 (46%), Gaps = 6/301 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N ++NG C+    + A  +F+ ++     P+ +TYN LI GL K  R+  A  ++ 
Sbjct: 363 TVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVI 422

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  +G  P+  T+ T++    R  + +    ILS M+ KG   +   Y +++ AF K G
Sbjct: 423 EMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNG 482

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++ EA   ++ M    V      YN +I+ Y + G  + A++L ++M+  G      T+ 
Sbjct: 483 KILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYN 542

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           +LI GLCK   I  A   L+ +   G   ++ +YN ++         D A+ + + M   
Sbjct: 543 LLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKC 602

Query: 248 -VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            +K S  TY  +  +L  A R+     L    L   V         +VD   ++ C  E+
Sbjct: 603 GIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDA--YAKCGEES 660

Query: 306 K 306
           K
Sbjct: 661 K 661



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 139/316 (43%), Gaps = 39/316 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY----------------- 48
           L P   T+N++L+GLC+         +   +     VP+  TY                 
Sbjct: 254 LKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTML 313

Query: 49  ------------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                             +IL+ GLCK G++  A  +L+ L +SG     + Y T++   
Sbjct: 314 SLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGY 373

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +    +    I   MK +    D   Y  +I    K+ R+ EA D + +M  +GV   +
Sbjct: 374 CQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSV 433

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            ++NTLI+ Y + G+LE  +++L +M+++G + +  ++  +++  CK G I  A   L+ 
Sbjct: 434 ETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDD 493

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSF-TYSSMVHNLCKAKR 266
           M         + YN I+D   + G  D A  + E M+   V  S  TY+ ++  LCK  +
Sbjct: 494 MFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQ 553

Query: 267 LPSASKLLLSCLKSGV 282
           +  A +LL S    G+
Sbjct: 554 ISEAEELLDSLRNYGL 569



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 2/188 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   D+ P    +N +++   +   TD A  +   ++  G  P +VTYN+LIKGLCK  +
Sbjct: 494 MFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQ 553

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +L  L + G AP+ I+Y T++  CC+R+   +  LE+   M + G       Y 
Sbjct: 554 ISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDR-ALELEKEMWKCGIKPSPRTYR 612

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            + ++    GR+ E  +  +QM+   V      YN +++ Y K G+      L  EM  +
Sbjct: 613 MLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDK 672

Query: 180 GFECDKYT 187
           G     YT
Sbjct: 673 GIAVGDYT 680


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 154/306 (50%), Gaps = 4/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ +++ LC++   D A+ +F+ ++  G    LVTYN L+ GLCKAG+      +LK++
Sbjct: 207 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDM 266

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PN IT+  ++    +  K +   E+   M  KG + +   Y +++  +    RL
Sbjct: 267 TSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRL 326

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + ++ MV +    DIV++ +LI  YCK  +++    L  ++ K+G   +  T++IL
Sbjct: 327 SEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSIL 386

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           + G C++G ++ A    + M  +G   ++  Y  ++D L  +GK++ A+ +FE ++    
Sbjct: 387 VQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 446

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D   Y+ ++  +CK  ++  A  L  S    GV+        ++ GL   G   EA  
Sbjct: 447 NLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 506

Query: 308 IQSKIR 313
           +  K+ 
Sbjct: 507 LLRKME 512



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 153/315 (48%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TFN ++NGLC       A+ +   + ++G  P +VTYN ++ G+CK+G    A  +
Sbjct: 133 PDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDL 192

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ +     +  TY+TI+    R+      + +   M+ KG       Y +++    K
Sbjct: 193 LRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCK 252

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +    ++ M +  +  +++++N LI+++ KEGKL+ A  L  EM  +G   +  T
Sbjct: 253 AGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTIT 312

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A   L+ M +     ++  +  ++    K  ++D  + +F  + 
Sbjct: 313 YNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKIS 372

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V ++ TYS +V   C++ +L  A +L    +  GV         ++DGL  +G   
Sbjct: 373 KRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLE 432

Query: 304 EAKKIQSKIRMAKIS 318
           +A +I   ++ +K++
Sbjct: 433 KALEIFEDLQKSKMN 447



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 121/230 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  + +P   TF  ++ G CK +  D  +++FR + K G V   VTY+IL++G C++G+
Sbjct: 336 MVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGK 395

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + +E+   G  P+ +TY  ++     N K +  LEI   +++     D   Y  
Sbjct: 396 LEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTI 455

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++++A +    +   GV+ ++++Y  +I+  CK+G L  A +LL +ME+ G
Sbjct: 456 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 515

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            E +  T+  LI    + G++  +   +E M   GF ++  +   ++D L
Sbjct: 516 NEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 565



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 135/293 (46%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N  C+   T  A  +   + K G+ P+  T+N LI GLC   ++  A  ++  +
Sbjct: 102 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARM 161

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++G  PN +TY +I+    ++    L L++L  M  +    D F Y T+I +  + G +
Sbjct: 162 VENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCI 221

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A    ++M T G++  +V+YN+L+   CK GK      LL +M  +    +  T  +L
Sbjct: 222 DAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVL 281

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           ID   K G ++ A    + M   G   N   YN ++D      ++  A N+ + M     
Sbjct: 282 IDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNC 341

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             D  T++S++   CK KR+    KL     K G+         +V G   SG
Sbjct: 342 SPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSG 394



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 147/298 (49%), Gaps = 4/298 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN++++   K      A  +++ +   G  P  +TYN L+ G C   RL  A 
Sbjct: 271 IIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEAN 330

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +  +P+ +T+T+++K   + ++   G+++   + ++G   +   Y  ++  F
Sbjct: 331 NMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGF 390

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+L+ A +  ++MV+ GV  D+++Y  L++  C  GKLE A  + ++++K     D 
Sbjct: 391 CQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDI 450

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +TI+I+G+CK G ++ A      +   G   N+  Y  ++  L K G +  A  +   
Sbjct: 451 VMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRK 510

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           ME      +  TY++++    +   L +++KL+      G     S+ K V+D L  +
Sbjct: 511 MEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSA 568



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P T T+N +++G C       A  M   + ++   P++VT+  LIKG CK  R
Sbjct: 301 MITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKR 360

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +++   G   N +TY+ +++   ++ K ++  E+   M   G   D   Y  
Sbjct: 361 VDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGI 420

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G+L++A +  E +    + LDIV Y  +I   CK GK+E A+ L   +  +G
Sbjct: 421 LLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKG 480

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T++I GLCK G++  A + L  M + G + N   YN ++    +DG +  + 
Sbjct: 481 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASA 540

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
            + E M+              C      S+ K+++  L S V   K  +++
Sbjct: 541 KLIEEMKS-------------CGFSADASSIKMVIDMLSSAVWWFKEPRRS 578



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 4/273 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F+ + +   +P LV ++    G+    +        K++  +G A N  T   +
Sbjct: 47  DDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIM 106

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  K      +L  + + GY  D   + T+I       ++ EA   + +MV +G 
Sbjct: 107 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGC 166

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q ++V+YN+++N  CK G    A  LL +M+++  + D +T++ +ID LC+ G I  A  
Sbjct: 167 QPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAIS 226

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             + M   G  S+L  YN +V  L K GK +  + + + M     + +  T++ ++    
Sbjct: 227 LFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFV 286

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           K  +L  A++L    +  G+        +++DG
Sbjct: 287 KEGKLQEANELYKEMITKGISPNTITYNSLMDG 319


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 150/320 (46%), Gaps = 20/320 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P T+T++ ++  LC     DNA  +F  ++ +  VP++ TY ILI   CK G 
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGL 530

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ AR    E+   G APN +TYT ++    + RK     E+   M  +G   +   Y  
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 121 VIAAFVKIGRLKEATDYMEQM--------------VTDGVQLD--IVSYNTLINLYCKEG 164
           +I    K G++++A     +M              + DG   D  I +Y  L++  CK  
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K++ A  LLD M  +G E +   +  LIDG CK G +  A++    M++ G+  N+  Y+
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++DRL KD ++D A+ V   M       +   Y+ M+  LCK  +   A +L+    + 
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 281 GVRILKSAQKAVVDGLRHSG 300
           G         A++DG   +G
Sbjct: 771 GCHPNVVTYTAMIDGFGKAG 790



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 131/268 (48%), Gaps = 2/268 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK      A  +   +   G  P  + Y+ LI G CK G+L  A+ +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ + G+ PN  TY++++   F++++  L L++LS M       +   Y  +I    K
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+  EA   M  M   G   ++V+Y  +I+ + K GK++    L+ +M  +G   +  T
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI--NVFES 245
           + +LI+  C AG +  A   L+ M +  +  ++  Y  +++   ++  I   +   + E+
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKL 273
           + V     Y  ++ + CKA RL  A +L
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALEL 901



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 159/406 (39%), Gaps = 96/406 (23%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG------ 54
           MI     P    FN +++  C++     A ++ + +   G  P  V YNILI G      
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419

Query: 55  -----------------------------------LCKAGRLRTARWILKELGDSGHAPN 79
                                              LC AG+   A  I++E+   G  P+
Sbjct: 420 LPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPD 479

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
             TY+ ++       K      +   MK      D F Y  +I +F K+G L++A  + +
Sbjct: 480 TSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFD 539

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG------------------- 180
           +MV DG   ++V+Y  LI+ Y K  K+ +A  L + M  +G                   
Sbjct: 540 EMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSG 599

Query: 181 ------------------------FECDK--------YTHTILIDGLCKAGNIKGARLHL 208
                                   F+ D         +T+  L+DGLCKA  +K AR  L
Sbjct: 600 QIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL 659

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           + M+  G + N   Y+ ++D   K GK+D A  VF  M  +    + +TYSS++  L K 
Sbjct: 660 DVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKD 719

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           KRL  A K+L   L++           ++DGL   G   EA ++ S
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 135/349 (38%), Gaps = 83/349 (23%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C+N   + AL     L+  G+ P  +TYN L++   +A RL TA  + +E+ 
Sbjct: 200 LNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMS 259

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           DSG   +  T    +    +  +++   E L+ ++++ +  D   Y  +I+   +    +
Sbjct: 260 DSGFNMDGYTLGCFVHLLCKAGRWR---EALALIEKEEFKLDTVIYTQMISGLCEASLFE 316

Query: 133 EATDYMEQMVTDGVQLDIVSY-----------------------------------NTLI 157
           EA D++ +M +     ++V+Y                                   N+LI
Sbjct: 317 EAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG----------------------- 194
           + YC+ G    AY LL +M   G +     + ILI G                       
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436

Query: 195 ------------------LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
                             LC AG  + A   +  M   GF  +   Y+ ++  L    K+
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           D+A  +FE M+    V D FTY+ ++ + CK   L  A K     ++ G
Sbjct: 497 DNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +  M++GLCK   TD A R+   +++ G  P +VTY  +I G  KAG+
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +++++G  G APN +TY  ++  C          ++L  MK+  +     GY  
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 121 VIAAF-----VKIGRLKEATDYMEQMVTDGVQLDIV-SYNTLINLYCKEGKLEAAYLLLD 174
           VI  F     + +G L E        + + V + I+ +Y  LI+ +CK G+LE A  L  
Sbjct: 852 VIEGFNREFIISLGLLDE--------IAENVAVPIIPAYRILIDSFCKAGRLELALELHK 903

Query: 175 EMEK--QGFECDKYTHTILIDGLCKAGNIKGA 204
           EM         DK  ++ LI+ L  A  +  A
Sbjct: 904 EMSSCTSYSAADKDLYSSLIESLSLASKVDKA 935



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 7/232 (3%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            Y+ L++ L   G  R     L+E+ D            +++ C RN  + + LE L  +
Sbjct: 164 VYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRL 223

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           K  GY      Y  ++  F++  RL  A     +M   G  +D  +    ++L CK G+ 
Sbjct: 224 KDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRW 283

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
             A  L+   EK+ F+ D   +T +I GLC+A   + A   L  M       N+  Y  +
Sbjct: 284 REALALI---EKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRIL 340

Query: 227 VDRLGKDGKIDHAINVFESMEVKDSFT----YSSMVHNLCKAKRLPSASKLL 274
           +    +  ++     +   M  +  +     ++S++H  C++     A KLL
Sbjct: 341 LCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 150/320 (46%), Gaps = 20/320 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P T+T++ ++  LC     DNA  +F  ++ +  VP++ TY ILI   CK G 
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGL 530

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ AR    E+   G APN +TYT ++    + RK     E+   M  +G   +   Y  
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 121 VIAAFVKIGRLKEATDYMEQM--------------VTDGVQLD--IVSYNTLINLYCKEG 164
           +I    K G++++A     +M              + DG   D  I +Y  L++  CK  
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K++ A  LLD M  +G E +   +  LIDG CK G +  A++    M++ G+  N+  Y+
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++DRL KD ++D A+ V   M       +   Y+ M+  LCK  +   A +L+    + 
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 281 GVRILKSAQKAVVDGLRHSG 300
           G         A++DG   +G
Sbjct: 771 GCHPNVVTYTAMIDGFGKAG 790



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 131/268 (48%), Gaps = 2/268 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK      A  +   +   G  P  + Y+ LI G CK G+L  A+ +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ + G+ PN  TY++++   F++++  L L++LS M       +   Y  +I    K
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+  EA   M  M   G   ++V+Y  +I+ + K GK++    L+ +M  +G   +  T
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI--NVFES 245
           + +LI+  C AG +  A   L+ M +  +  ++  Y  +++   ++  I   +   + E+
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKL 273
           + V     Y  ++ + CKA RL  A +L
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALEL 901



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 159/406 (39%), Gaps = 96/406 (23%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG------ 54
           MI     P    FN +++  C++     A ++ + +   G  P  V YNILI G      
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419

Query: 55  -----------------------------------LCKAGRLRTARWILKELGDSGHAPN 79
                                              LC AG+   A  I++E+   G  P+
Sbjct: 420 LPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPD 479

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
             TY+ ++       K      +   MK      D F Y  +I +F K+G L++A  + +
Sbjct: 480 TSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFD 539

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG------------------- 180
           +MV DG   ++V+Y  LI+ Y K  K+ +A  L + M  +G                   
Sbjct: 540 EMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSG 599

Query: 181 ------------------------FECDK--------YTHTILIDGLCKAGNIKGARLHL 208
                                   F+ D         +T+  L+DGLCKA  +K AR  L
Sbjct: 600 QIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL 659

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           + M+  G + N   Y+ ++D   K GK+D A  VF  M  +    + +TYSS++  L K 
Sbjct: 660 DVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKD 719

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           KRL  A K+L   L++           ++DGL   G   EA ++ S
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 135/349 (38%), Gaps = 83/349 (23%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C+N   + AL     L+  G+ P  +TYN L++   +A RL TA  + +E+ 
Sbjct: 200 LNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMS 259

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           DSG   +  T    +    +  +++   E L+ ++++ +  D   Y  +I+   +    +
Sbjct: 260 DSGFNMDGYTLGCFVHLLCKAGRWR---EALALIEKEEFKLDTVIYTQMISGLCEASLFE 316

Query: 133 EATDYMEQMVTDGVQLDIVSY-----------------------------------NTLI 157
           EA D++ +M +     ++V+Y                                   N+LI
Sbjct: 317 EAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG----------------------- 194
           + YC+ G    AY LL +M   G +     + ILI G                       
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436

Query: 195 ------------------LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
                             LC AG  + A   +  M   GF  +   Y+ ++  L    K+
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           D+A  +FE M+    V D FTY+ ++ + CK   L  A K     ++ G
Sbjct: 497 DNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 24/216 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +  M++GLCK   TD A R+   +++ G  P +VTY  +I G  KAG+
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +++++G  G APN +TY  ++  C          ++L  MK+  +     GY  
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 121 VIAAF-----VKIGRLKEATDYMEQMVTDGVQLDIV-SYNTLINLYCKEGKLEAAYLLLD 174
           VI  F     + +G L E        + + V + I+ +Y  LI+ +CK G+LE A     
Sbjct: 852 VIEGFNREFIISLGLLDE--------IAENVAVPIIPAYRILIDSFCKAGRLELAL---- 899

Query: 175 EMEKQGFECDKYT------HTILIDGLCKAGNIKGA 204
           E+ K    C  Y+      ++ LI+ L  A  +  A
Sbjct: 900 ELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKA 935



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 7/232 (3%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            Y+ L++ L   G  R     L+E+ D            +++ C RN  + + LE L  +
Sbjct: 164 VYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRL 223

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           K  GY      Y  ++  F++  RL  A     +M   G  +D  +    ++L CK G+ 
Sbjct: 224 KDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRW 283

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
             A  L+   EK+ F+ D   +T +I GLC+A   + A   L  M       N+  Y  +
Sbjct: 284 REALALI---EKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRIL 340

Query: 227 VDRLGKDGKIDHAINVFESMEVKDSFT----YSSMVHNLCKAKRLPSASKLL 274
           +    +  ++     +   M  +  +     ++S++H  C++     A KLL
Sbjct: 341 LCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 149/298 (50%), Gaps = 4/298 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           + L    K R  D  L  FR +   G    + +  I+++GLC+ G +  ++ ++KE    
Sbjct: 175 VFLVAAKKRRRIDLCLEFFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGK 234

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P A TY TI+    ++R +    +IL  MK+ G  ++   Y  +I   VK G++ + 
Sbjct: 235 GIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDV 294

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
               ++M   G++ DI  Y +LI+  C++G ++ A+LL DE+ ++G     +T+  LIDG
Sbjct: 295 EKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDG 354

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
           +CK G +  A + +  M   G +     +N +++   + G ID A  +++ ME K    D
Sbjct: 355 VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQAD 414

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            FT +++     + KR   A + L   ++ GVR+   +   ++D     G   EAK++
Sbjct: 415 VFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRL 472



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 130/283 (45%), Gaps = 5/283 (1%)

Query: 21  CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80
           C+      A  +F  L + G +P   TY  LI G+CK G +  A  ++ E+   G     
Sbjct: 321 CRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQ 380

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
           + + T++    R         I   M++KG+  D F   T+ + F ++ R  EA  ++ +
Sbjct: 381 VVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFR 440

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           M+  GV+L  VSY  LI++YCKEG +E A  L  EM  +  + +  T+ ++I   CK G 
Sbjct: 441 MMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGK 500

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSS 256
           +K AR     M   G D +   Y  ++        +D A+ +F  M +K    +S TY+ 
Sbjct: 501 VKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTV 560

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           M+  L KA +   A  L     + G  I      A++ G  HS
Sbjct: 561 MISGLSKAGKSDEAFGLYDEIKRKGYTIDNKVYTALI-GSMHS 602



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 150/347 (43%), Gaps = 39/347 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++N   K+R      ++ + ++K G V   VTY +LI+   K G++    
Sbjct: 236 IKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVE 295

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G   +   YT+++    R    K    +   +  KG       Y  +I   
Sbjct: 296 KLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGV 355

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +  A   M +M + GV +  V +NTLIN YC++G ++ A ++ D MEK+GF+ D 
Sbjct: 356 CKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADV 415

Query: 186 YT-----------------------------------HTILIDGLCKAGNIKGARLHLEY 210
           +T                                   +T LID  CK GN++ A+     
Sbjct: 416 FTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVE 475

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M+      N   YN ++    K GK+  A  ++ +M+      DS+TY+S++H  C A  
Sbjct: 476 MSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADN 535

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           +  A +L       G+         ++ GL  +G   EA  +  +I+
Sbjct: 536 VDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIK 582



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 121/260 (46%), Gaps = 4/260 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P + T+  +++G+CK      A  +   +Q  G     V +N LI G C+ G +  A 
Sbjct: 341 LLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEAS 400

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   +   G   +  T  TI  C  R ++Y    + L  M   G       Y  +I  +
Sbjct: 401 MIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVY 460

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G ++EA     +M +  VQ + ++YN +I  YCK+GK++ A  L   M+  G + D 
Sbjct: 461 CKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDS 520

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+T LI G C A N+  A      M   G D N   Y  ++  L K GK D A  +++ 
Sbjct: 521 YTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDE 580

Query: 246 MEVK----DSFTYSSMVHNL 261
           ++ K    D+  Y++++ ++
Sbjct: 581 IKRKGYTIDNKVYTALIGSM 600



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 35/195 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G +   T ++  +++  CK    + A R+F  +      P  +TYN++I   CK G+
Sbjct: 441 MMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGK 500

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ AR +   +  +G  P++ TYT+++                             G C 
Sbjct: 501 VKEARKLWANMKANGMDPDSYTYTSLIH----------------------------GECI 532

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                     + EA     +M   G+  + V+Y  +I+   K GK + A+ L DE++++G
Sbjct: 533 A-------DNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIKRKG 585

Query: 181 FECDKYTHTILIDGL 195
           +  D   +T LI  +
Sbjct: 586 YTIDNKVYTALIGSM 600


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 123/235 (52%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN++++G CK R  DNAL+    +++HGF P++++Y  +++  C+    R    +L E+
Sbjct: 259 TFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEM 318

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PN +TYT +M    + ++    LE+   MK      D   Y ++I    K GRL
Sbjct: 319 EEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRL 378

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           K+A D  E M   G   D+++YNT+I+  C   + E A  LL +ME+   + D  T++ L
Sbjct: 379 KDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPL 438

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +   C+   +K     L +M K      +  Y+ +V  L K GK++HA   FE M
Sbjct: 439 LKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLFFEEM 493



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 5/246 (2%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   + +YN ++  L K  +      +++E+   G   +  T T +M+   R  ++K  
Sbjct: 148 GYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATMTKVMRRLARASRWKDA 207

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           +E    M+R G   D     T++ A VK   ++ A D   +   D + L+  ++N LI+ 
Sbjct: 208 IEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEF-KDSILLNPHTFNVLIHG 266

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK  K++ A   + EM++ GF  D  ++T +++  C+  + +     L  M + G   N
Sbjct: 267 WCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPN 326

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
           +  Y  ++  LGK  +I  A+ V+E M+    V D+  YSS+++ L KA RL  A  +  
Sbjct: 327 VVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFE 386

Query: 276 SCLKSG 281
              K G
Sbjct: 387 DMTKQG 392



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ I+++ L K +    AL ++  ++    VP+   Y+ LI  L KAGRL+ AR 
Sbjct: 324 PPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARD 383

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +++   G  P+ +TY T++     + + +  L++L  M+      D   Y  ++    
Sbjct: 384 VFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCC 443

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  R+K  +  +  M  + + L++ +Y+ L++  CK GKLE A L  +EM  +G      
Sbjct: 444 RNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLFFEEMVSKGLVPKDC 503

Query: 187 TH 188
           TH
Sbjct: 504 TH 505



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 5/294 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           AT   ++  L +     +A+  FRG+++ G   + +  N L+  L K   +  A  +  E
Sbjct: 189 ATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVE 248

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
             DS    N  T+  ++    + RK    L+ ++ MK  G+  D   Y +++ A+ +   
Sbjct: 249 FKDSILL-NPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKD 307

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            ++    + +M   G   ++V+Y  +++   K  ++  A  + ++M+      D   ++ 
Sbjct: 308 FRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSS 367

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248
           LI  L KAG +K AR   E M K G   ++  YN ++       + + A+ +   ME   
Sbjct: 368 LIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESS 427

Query: 249 --KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
              D  TYS ++   C+  R+   S LL    K+ + +       +V GL  SG
Sbjct: 428 CKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSG 481


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 149/307 (48%), Gaps = 6/307 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T  F+ +L+ L KN++    + +F+  Q +G  P L T NILI   C    +  A  
Sbjct: 90  PPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFS 149

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +   +   G+ P+AIT  T++K  CF   + K  L     +  +G+  D   Y T+I   
Sbjct: 150 VFANILKRGYHPDAITLNTLIKGLCFCG-EIKRALYFHDKVVAQGFQLDQVSYGTLINGL 208

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  K     + ++    V+ D+V Y T+I+  CK  ++  A  L  EM  +G   + 
Sbjct: 209 CKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNV 268

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LI G C  GN+K A   L  M     + ++  +N ++D LGK+GKID AI++FE 
Sbjct: 269 FTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEE 328

Query: 246 MEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ K+ F    TY+S++  LCK   L  A  L     + G++    +   ++D L   G 
Sbjct: 329 MKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGR 388

Query: 302 RREAKKI 308
              AK+ 
Sbjct: 389 LENAKQF 395



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 139/261 (53%), Gaps = 4/261 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N ++ GLC       AL     +   GF  + V+Y  LI GLCKAG  +    +
Sbjct: 161 PDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARL 220

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L++L      P+ + YTTI+ C  +N++     ++ S M  KG + + F Y T+I  F  
Sbjct: 221 LRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCI 280

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G LKEA   + +M    +  D+ ++N LI+   KEGK++ A  L +EM+ +    +  T
Sbjct: 281 MGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVT 340

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LIDGLCK  +++ A    + M + G   ++ +Y  ++D L K G++++A   F+ + 
Sbjct: 341 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLL 400

Query: 248 VK----DSFTYSSMVHNLCKA 264
           VK    +  TY+ M++ LCKA
Sbjct: 401 VKGYHLNVRTYNVMINGLCKA 421



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 152/312 (48%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T NI++N  C   +   A  +F  + K G+ P+ +T N LIKGLC  G ++ A 
Sbjct: 124 VTPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRAL 183

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +   ++   G   + ++Y T++    +  + K    +L  ++      D   Y T+I   
Sbjct: 184 YFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCL 243

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ +A D   +M+  G+  ++ +YNTLI  +C  G L+ A+ LL+EM+ +    D 
Sbjct: 244 CKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDV 303

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  ILID L K G I  A    E M       N+  Y  ++D L K+  ++ AI + + 
Sbjct: 304 YTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKK 363

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ +    D ++Y+ ++  LCK  RL +A +     L  G  +       +++GL  +G 
Sbjct: 364 MKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGL 423

Query: 302 RREAKKIQSKIR 313
             +   ++SK+ 
Sbjct: 424 FGDVMDLKSKME 435



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 8/278 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++NGLCK   T    R+ R L+ H   P++V Y  +I  LCK  R+  A  +  E
Sbjct: 199 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSE 258

Query: 71  LGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           +   G +PN  TY T++   C   N K    L  L+ MK K    D + +  +I A  K 
Sbjct: 259 MIVKGISPNVFTYNTLIYGFCIMGNLKEAFSL--LNEMKLKNINPDVYTFNILIDALGKE 316

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G++ EA    E+M    +  +IV+Y +LI+  CK   LE A  L  +M++QG + D Y++
Sbjct: 317 GKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSY 376

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           TIL+D LCK G ++ A+   +++   G+  N+  YN +++ L K G     +++   ME 
Sbjct: 377 TILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEG 436

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              + D+ T+ +++  L +      A K L   +  G+
Sbjct: 437 KGCMPDAITFKTIICALFEKDENDKAEKFLREMIARGL 474



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T+N ++ G C       A  +   ++     P++ T+NILI  L K G+
Sbjct: 259 MIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGK 318

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +E+      PN +TYT+++    +N   +  + +   MK +G   D + Y  
Sbjct: 319 IDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTI 378

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K GRL+ A  + + ++  G  L++ +YN +IN  CK G       L  +ME +G
Sbjct: 379 LLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKG 438

Query: 181 FECDKYTHTILIDGL 195
              D  T   +I  L
Sbjct: 439 CMPDAITFKTIICAL 453



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 4/207 (1%)

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           F +  ++++ VK           +Q  ++GV  ++ + N LIN +C    +  A+ +   
Sbjct: 94  FHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFAN 153

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           + K+G+  D  T   LI GLC  G IK A    + +   GF  +  +Y  +++ L K G+
Sbjct: 154 ILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGE 213

Query: 236 IDHAINVFESME---VK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
                 +   +E   VK D   Y++++H LCK KR+  A  L    +  G+         
Sbjct: 214 TKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNT 273

Query: 292 VVDGLRHSGCRREAKKIQSKIRMAKIS 318
           ++ G    G  +EA  + +++++  I+
Sbjct: 274 LIYGFCIMGNLKEAFSLLNEMKLKNIN 300


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 135/271 (49%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P TATF  ++ GLC       AL++F  +   GF P+++TY  LI GLCK G   TA   
Sbjct: 122 PSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRF 181

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      P  + Y+TI+    ++R+    L + S M  KG + + F Y ++I     
Sbjct: 182 LRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCI 241

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G  KEA      M+   +  D +++NTL++  CKEG +  A+ ++D M +   + D  T
Sbjct: 242 LGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVT 301

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +       + M + G   ++ +Y  +++   K   +D A+ +FE M 
Sbjct: 302 YNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMS 361

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + D+ TY++++H LC   RL  A  L 
Sbjct: 362 QQGLIPDTVTYNTLIHGLCHVGRLRDAIALF 392



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 142/279 (50%), Gaps = 6/279 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ +++GLC   +   A+R+F  +     +P+ +T+N L+  LCK G 
Sbjct: 220 MLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGM 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A +++  +  S   P+ +TY ++M   C R+   K  + +   M RKG       Y 
Sbjct: 280 VVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGK-TVNVFDTMVRKGCVPSVISYT 338

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I  + KI  + +A    E+M   G+  D V+YNTLI+  C  G+L  A  L  EM   
Sbjct: 339 TLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVY 398

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T+ IL D LCK   +  A + L+ +     D ++  Y+ ++D + + G+++ A
Sbjct: 399 GQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAA 458

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            ++F  +  K    D  TY+ M++ LC+   L  ASKL 
Sbjct: 459 RDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLF 497



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 3/234 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  ++NG CK +  D A+ +F  + + G +P+ VTYN LI GLC  GRLR A  +
Sbjct: 332 PSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIAL 391

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+   G  P+ +TY  +     +N +    + +L  ++      D   Y  V+    +
Sbjct: 392 FHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCR 451

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A D   ++ + G+  D+ +Y  +IN  C++G L  A  L  EM++ G   +  T
Sbjct: 452 AGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACT 511

Query: 188 HTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           + ++  G  +    ++  +L  E +++ GF  ++     +V+ L  DG +D ++
Sbjct: 512 YNLITRGFLRNNETLRAIQLFQEMLSR-GFSIDVSTTTLLVEMLSDDG-LDQSV 563



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 143/338 (42%), Gaps = 41/338 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ +L  + + ++    L +++ +   G      T NILI   C   RL  A  +
Sbjct: 52  PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 111

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+  T+TT+++      K    L++   M  +G+  D   Y T+I    K
Sbjct: 112 LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 171

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G    A  ++  M     +  +V Y+T+I+  CK+ +L  A  L  +M  +G   + +T
Sbjct: 172 VGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFT 231

Query: 188 HTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA------- 239
           ++ LI GLC  G+ K A RL    +++      L  +N +VD L K+G +  A       
Sbjct: 232 YSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQL-TFNTLVDALCKEGMVVKAHYVVDVM 290

Query: 240 ----------------------------INVFESME----VKDSFTYSSMVHNLCKAKRL 267
                                       +NVF++M     V    +Y+++++  CK + +
Sbjct: 291 IQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIM 350

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             A  L     + G+         ++ GL H G  R+A
Sbjct: 351 DKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDA 388



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 4/175 (2%)

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           + +  + +A     +M+       IV ++ L+    +         L  +M+  G   + 
Sbjct: 30  LNVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNT 89

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  ILI+  C    +  A   L  + K+G+  +   +  ++  L  +GKI  A+ +F+ 
Sbjct: 90  YTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDK 149

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M       D  TY ++++ LCK     +A + L S  +   R        ++D L
Sbjct: 150 MTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSL 204


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 156/328 (47%), Gaps = 23/328 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    + ++L+ LC     D A+++   ++  G +P+ VTYN  + GLCK GR+  A 
Sbjct: 238 IMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAF 297

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L  L D G A     Y+ ++   F+ R++  G      M  +  + D   Y  +I   
Sbjct: 298 QRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGC 357

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GR+++A  +++ M   G   D   YNT++ + C  G LE A+ L  EM +     D 
Sbjct: 358 AEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDS 417

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T TI+I GLCK G +  A    + M + G D  +  YN ++D   ++G+++ A  +F  
Sbjct: 418 TTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHK 477

Query: 246 ME-----------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
           ME                 V DS +   +VH++C++ ++  A KLL S + SGV      
Sbjct: 478 MEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVT 537

Query: 289 QKAVVDGLRHSGCRREAKKIQSKIRMAK 316
              +++GL    C+  A+ +   +R+ K
Sbjct: 538 YNTLINGL----CK--ARNLDGAVRLFK 559



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 117/245 (47%), Gaps = 26/245 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L   + T  IM+ GLCK    D A+++F  + +HG  P ++TYN LI G  + GR
Sbjct: 408 MLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGR 467

Query: 61  LRTARWILKELGDSGHAPNAITYTTI--MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           L  AR +  ++ + G+ P+     T+   + C      KL                    
Sbjct: 468 LEEARMLFHKM-EMGNNPSLFLRLTLGANQVCDSESLRKL-------------------- 506

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
              +    + G++ +A   +  ++  GV  D+V+YNTLIN  CK   L+ A  L  E++ 
Sbjct: 507 ---VHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQL 563

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D+ T+  LIDGL +A     A +  + + + G   +L  YN ++  L +  K+  
Sbjct: 564 KGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQ 623

Query: 239 AINVF 243
           AIN++
Sbjct: 624 AINLW 628



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 130/289 (44%), Gaps = 5/289 (1%)

Query: 24  RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 83
           R+ D A++ F  + +    P    YN ++K L  +G +  A  +   +  +G APN  TY
Sbjct: 152 RHAD-AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATY 210

Query: 84  TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
             +M    +       L++   M  +G   +   Y  ++++    G++ EA   +  M  
Sbjct: 211 NVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKD 270

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            G   D V+YN  ++  CK G++  A+  L  ++  GF      ++ LIDGL +A     
Sbjct: 271 KGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDE 330

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVH 259
              + + M +     ++  Y  ++    + G+I+ A++  + M+    V D+F Y++++ 
Sbjct: 331 GFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLK 390

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            LC    L  A  L    L++ + +  + Q  ++ GL   G   EA +I
Sbjct: 391 VLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQI 439



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 4/232 (1%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            +  L+     AGR   A      + +    P A  Y TI+K    +    L L + + M
Sbjct: 139 AFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRM 198

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
              G   +   Y  ++    K G   +A    ++M+  G+  ++  Y  L++  C  GK+
Sbjct: 199 VAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKI 258

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A  LL  M+ +G   D+ T+   + GLCK G +  A   L  +   GF   L+ Y+C+
Sbjct: 259 DEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCL 318

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           +D L +  + D     +++M  +    D   Y+ M+    +A R+  A   L
Sbjct: 319 IDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I   + P   T+N ++NGLCK R  D A+R+F+ LQ  G  P+ +TY  LI GL +A R
Sbjct: 526 IIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHR 585

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + + +  SG +P+   Y ++M+   R +K    + +      K Y F       
Sbjct: 586 ENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFP------ 639

Query: 121 VIAAFVKIGRLKEATD-YMEQMVTDGVQLD----IVSYNT----LINLYCKEGKLEAAYL 171
            + + V     KE  D  ++  V + +++D     +S N     LI L C+  + + A  
Sbjct: 640 -VESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIWLIGL-CQVRRTDDALR 697

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           +   +++ G +       +LI+ LC   N+  A
Sbjct: 698 IFHTLQEFGIDITPACCALLINYLCWDRNLNAA 730



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +++ +C++     A ++ R +   G VP++VTYN LI GLCKA  L  A  + KEL   G
Sbjct: 506 LVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            +P+ ITY T++    R  +    + +   + + G +     Y +++ +  ++ +L +A 
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 136 ----DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
               DY+ +     V+ ++++     +   ++G L+     L +++++        +TI 
Sbjct: 626 NLWLDYLPKKYNFPVESEVLAN---AHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIW 682

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + GLC+      A      + + G D        +++ L  D  ++ A+++ 
Sbjct: 683 LIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVDIM 734


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 145/281 (51%), Gaps = 6/281 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T++ +L+  C+N   D+A  M   +   GF      YN +I  LCK G+L  A  
Sbjct: 380 APNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATR 439

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++E+   G  P+  TY T++     N   +    I   +  +G   +G  Y T+I A +
Sbjct: 440 LVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALL 499

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR +E      +M+  G QLD++SYN LI   CKEG ++ +  LL+EM  +G + + +
Sbjct: 500 RNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNF 559

Query: 187 THTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           ++ +LI+ LCKAG ++ A  L  E +N+ G   ++  YN +++ L K G    A+N+ E 
Sbjct: 560 SYNMLINELCKAGKVRDALELSKEMLNQ-GLTPDIVTYNTLINGLCKVGWTHAALNLLEK 618

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +  +    D  TY+ ++   CK + L  A+ LL   +  G+
Sbjct: 619 LPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGI 659



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 162/341 (47%), Gaps = 37/341 (10%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMF---------------RG----------------L 36
           P   T+  +L GLC+ R  D A  M                RG                +
Sbjct: 280 PSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMM 339

Query: 37  QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96
              G  P++ TY+IL+ GLCK GR  +A  +L E+ + G APN +TY+T++    RN  +
Sbjct: 340 GSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMW 399

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
                +L  M  KG++ +  GY  +I A  K G+L +AT  +++M + G + DI +YNT+
Sbjct: 400 DDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTM 459

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLHLEYMNKIG 215
           I   C    +E A  +   + ++G   +  T+  LI  L + G  + G RL  E +   G
Sbjct: 460 IYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLH-G 518

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              ++ +YN ++  L K+G +D ++ + E M  K    ++F+Y+ +++ LCKA ++  A 
Sbjct: 519 CQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDAL 578

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +L    L  G+         +++GL   G    A  +  K+
Sbjct: 579 ELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKL 619



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 157/346 (45%), Gaps = 43/346 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV------------------- 46
           + P T TF +    LC+     +AL + RG+ +HG VP+ V                   
Sbjct: 173 VPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAA 232

Query: 47  ----------------TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                           T+N L+ GLC  GR+R A  ++  +   G  P+ +TY  +++  
Sbjct: 233 MLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGL 292

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            R R+      +L  +             TVI   +  G+L  AT+  E M + G   D+
Sbjct: 293 CRTRQADEACAMLGRLPEVNVVM----LNTVIRGCLTEGKLARATELYEMMGSKGCPPDV 348

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y+ L++  CK G+  +A  +LDEME++G   +  T++ L+   C+ G    AR  L+ 
Sbjct: 349 HTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 408

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M   GF  N + YN I+  L KDGK+D A  + + M+ +    D  TY++M+++LC    
Sbjct: 409 MLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDL 468

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  A  +  + ++ GV         ++  L  +G  +E  ++ S++
Sbjct: 469 MEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEM 514



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 105/220 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N M+  LC N   + A  +FR L + G V   +TYN LI  L + GR +    +
Sbjct: 451 PDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRL 510

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+   G   + I+Y  ++K   +       + +L  M  KG   + F Y  +I    K
Sbjct: 511 ASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCK 570

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++++A +  ++M+  G+  DIV+YNTLIN  CK G   AA  LL+++  +    D  T
Sbjct: 571 AGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVT 630

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
           + ILI   CK   +  A + L+     G   N   +  +V
Sbjct: 631 YNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMV 670



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 1/193 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++ L +N      LR+   +  HG   ++++YN LIK LCK G +  +  +L+E+
Sbjct: 490 TYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEM 549

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN  +Y  ++    +  K +  LE+   M  +G T D   Y T+I    K+G  
Sbjct: 550 VTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWT 609

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + +E++  + V  DIV+YN LI+ +CK   L+ A +LLD+    G   ++ T  ++
Sbjct: 610 HAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMM 669

Query: 192 IDGLCKAG-NIKG 203
           +    +   N++G
Sbjct: 670 VQNFVRQTVNLEG 682



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 126/301 (41%), Gaps = 47/301 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   ++N++L+ L +     +AL ++R + +    P   T+ +  + LC+ GR     
Sbjct: 138 VSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRA---- 193

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
                 GD+                         L +L  M R G   D   Y TVI A 
Sbjct: 194 ------GDA-------------------------LALLRGMARHGCVPDAVLYQTVIHAL 222

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           V  G + EA   +++M+  G   D+ ++N L+   C  G++  A  L+D M  QG     
Sbjct: 223 VAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSV 282

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+ GLC+      A   L  + ++    N+   N ++     +GK+  A  ++E 
Sbjct: 283 VTYGFLLQGLCRTRQADEACAMLGRLPEV----NVVMLNTVIRGCLTEGKLARATELYEM 338

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D  TYS ++H LCK  R  SA ++L    + G     +        L HS C
Sbjct: 339 MGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGC----APNIVTYSTLLHSFC 394

Query: 302 R 302
           R
Sbjct: 395 R 395



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   ++N+++N LCK     +AL + + +   G  P++VTYN LI GLCK G 
Sbjct: 549 MVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGW 608

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
              A  +L++L +    P+ +TY  ++ 
Sbjct: 609 THAALNLLEKLPNENVHPDIVTYNILIS 636



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+N ++NGLCK  +T  AL +   L      P++VTYNILI   CK   
Sbjct: 584 MLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRL 643

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
           L  A  +L +    G  PN  T+  +++
Sbjct: 644 LDDAAMLLDKAISGGIVPNERTWGMMVQ 671


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 4/297 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P    +N ++ G C     D AL+    + + G    + TYN+L+  L    R   
Sbjct: 213 GEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASD 272

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+E+  +G +P+  TY  ++    +    K  LE+   M +KG       Y ++I 
Sbjct: 273 AYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIY 332

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F + G+++E        V  G++ D+V YN LIN +C  G +E AY ++ EMEK+    
Sbjct: 333 VFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPP 392

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  L+ G C  G +  AR  ++ M K G   +L +YN ++      G I  A+ V 
Sbjct: 393 DDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVR 452

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + M  K       TY++++  LCK ++   A  L+   +  G+    S   ++++GL
Sbjct: 453 DEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 155/345 (44%), Gaps = 45/345 (13%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           CT TFNIML  LC       AL + R + +    P  VTYN +I G C  GR++ A  ++
Sbjct: 115 CTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEVM 170

Query: 69  KELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFV 126
           +E+ + G  AP+  TY T++    +  + +  +++   M  KG        Y  +I  + 
Sbjct: 171 REMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYC 230

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            +G+L  A  Y E MV  G+ + + +YN L++    + +   AY +L+EM+K GF  D +
Sbjct: 231 DVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVF 290

Query: 187 THTILIDGLCKAGNIKGARLHLEYMN---------------------------------- 212
           T+ ILI+G CK GN K A    E M+                                  
Sbjct: 291 TYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVA 350

Query: 213 -KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
            K G   ++  YN +++     G ++ A  +   ME K    D  TY++++   C   RL
Sbjct: 351 VKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRL 410

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             A  L+    K G++    +   ++ G    G  ++A +++ ++
Sbjct: 411 DEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEM 455


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 6/281 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T++ +L+  C+N   D+A  M   +   GF      YN +I  L K G+L  A  
Sbjct: 383 APNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMR 442

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++E+   G  P+  TY TI+     N +      I   +  +G   +G  Y T+I A +
Sbjct: 443 LVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALL 502

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             GR +E      +MV  G  LD+VSYN LI   CKEG ++ + +LL+EM  +G + + +
Sbjct: 503 HSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNF 562

Query: 187 THTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           ++ +LI+ LCKAG ++ A  L  E +N+ G   ++  YN +++ L K G    A+N+ E 
Sbjct: 563 SYNMLINELCKAGKVRDALELSKEMLNQ-GLTPDIVTYNTLINGLCKVGWTHAALNLLEK 621

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +  +    D  TY+ ++   CK + L  AS LL   +  G+
Sbjct: 622 LPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGI 662



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 37/342 (10%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMF---------------RG---------------- 35
           TP   T+  +L GLC+ R  D A  M                RG                
Sbjct: 282 TPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEM 341

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           +   G  P++ TYNIL+ GLCK GR  +A  +L E+ + G APN +TY+T++    RN  
Sbjct: 342 MGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGM 401

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
           +     +L  M  KG++ +  GY  +I A  K G+L EA   +++M + G + DI +YNT
Sbjct: 402 WDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNT 461

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLHLEYMNKI 214
           +I   C   +++ A  +   + ++G   +  T+  LI  L  +G  + G RL  E M   
Sbjct: 462 IIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANE-MVLH 520

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           G   ++ +YN ++  L K+G +D ++ + E M  K    ++F+Y+ +++ LCKA ++  A
Sbjct: 521 GCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDA 580

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            +L    L  G+         +++GL   G    A  +  K+
Sbjct: 581 LELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKL 622



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 43/346 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV------------------- 46
           + P T TF +    LC+     +AL + RG+ +HG VP+ V                   
Sbjct: 176 VPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAA 235

Query: 47  ----------------TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                           T+N ++ GLC  G +R A  ++  +   G  P+ +TY  +++  
Sbjct: 236 TLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGL 295

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            R R+      +L  +             TVI   +  G+L  AT+  E M + G   D+
Sbjct: 296 CRTRQADEAYAMLGRVPEVNVVM----LNTVIRGCLAEGKLARATELYEMMGSKGCPPDV 351

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +YN L++  CK G+  +A  +LDEME++G   +  T++ L+   C+ G    AR  L+ 
Sbjct: 352 HTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 411

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M+  GF  N + YN I+  LGKDGK+D A+ + + M+ +    D  TY++++++LC   +
Sbjct: 412 MSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQ 471

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  A  +  + L+ GV         ++  L HSG  +E  ++ +++
Sbjct: 472 MDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEM 517



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 104/220 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++  LC N   D A  +F  L + G V   +TYN LI  L  +GR +    +
Sbjct: 454 PDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRL 513

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+   G   + ++Y  ++K   +       + +L  M  KG   + F Y  +I    K
Sbjct: 514 ANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCK 573

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++++A +  ++M+  G+  DIV+YNTLIN  CK G   AA  LL+++  +    D  T
Sbjct: 574 AGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVT 633

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
           + ILI   CK   +  A + L+     G   N   +  +V
Sbjct: 634 YNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMV 673



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 95/186 (51%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++ L  +      LR+   +  HG   ++V+YN LIK LCK G +  +  +L+E+
Sbjct: 493 TYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEM 552

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN  +Y  ++    +  K +  LE+   M  +G T D   Y T+I    K+G  
Sbjct: 553 MTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWT 612

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + +E++  + V  DIV+YN LI+ +CK   L+ A +LLD+    G   ++ T  ++
Sbjct: 613 HAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMM 672

Query: 192 IDGLCK 197
           +    +
Sbjct: 673 VQNFVR 678



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 122/301 (40%), Gaps = 47/301 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   ++N +L+ L +     +AL ++R + +    P   T+ +  + LC+ GR R A 
Sbjct: 141 VTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDA- 199

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
                                             L +L  M R G   D   Y TVI A 
Sbjct: 200 ----------------------------------LALLRGMARHGCVPDAVLYQTVIHAL 225

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           V  G + EA   +++M+  G   D+ ++N ++   C  G +  A  L+D M   G     
Sbjct: 226 VAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSV 285

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+ GLC+      A   L  + ++    N+   N ++     +GK+  A  ++E 
Sbjct: 286 VTYGFLLRGLCRTRQADEAYAMLGRVPEV----NVVMLNTVIRGCLAEGKLARATELYEM 341

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D  TY+ ++H LCK  R  SA ++L    + G     +        L HS C
Sbjct: 342 MGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGC----APNIVTYSTLLHSFC 397

Query: 302 R 302
           R
Sbjct: 398 R 398



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   ++N+++N LCK     +AL + + +   G  P++VTYN LI GLCK G 
Sbjct: 552 MMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGW 611

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
              A  +L++L +    P+ +TY  ++ 
Sbjct: 612 THAALNLLEKLPNENVHPDIVTYNILIS 639



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+N ++NGLCK  +T  AL +   L      P++VTYNILI   CK   
Sbjct: 587 MLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRL 646

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
           L  A  +L +    G  PN  T+  +++   R
Sbjct: 647 LDDASMLLDKAVSGGIVPNERTWGMMVQNFVR 678


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 154/305 (50%), Gaps = 5/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NI + GLC+      A+R+  G++ +  VP++VTYN LI+GLCK    + A   L+ +
Sbjct: 223 TYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRM 281

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+  TY TI+    +    +   E+L     KG+  D   YC++I      G +
Sbjct: 282 MNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 341

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A +   +    G++ DIV YN+L+   C +G +  A  +++EM ++G   D  T+ I+
Sbjct: 342 ERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 401

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I+GLCK GNI  A + +      G+  ++  +N ++D   K  K+D A+ + E M     
Sbjct: 402 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 461

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+ TY+S+++ LCKA ++   ++     +  G          +++    S    EA K
Sbjct: 462 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 521

Query: 308 IQSKI 312
           +  K+
Sbjct: 522 VIVKM 526



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 138/281 (49%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N ++ GLCK      A+   R +   G +P+  TYN +I G CK   ++ A  
Sbjct: 252 VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 311

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK+    G  P+ +TY +++         +  LE+ +  + KG   D   Y +++    
Sbjct: 312 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 371

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G +  A   M +M  +G   DI +YN +IN  CK G +  A +++++   +G+  D +
Sbjct: 372 LQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF 431

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   LIDG CK   +  A   +E M + G   +   YN +++ L K GK++     F+ M
Sbjct: 432 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 491

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +K    +  TY+ ++ N C++ ++  ASK+++   + G+ 
Sbjct: 492 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 532



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 125/239 (52%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN +++G CK    D+AL++   + ++G  P+ +TYN ++ GLCKAG++      
Sbjct: 428 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 487

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  PN ITY  +++   R+ K +   +++  M ++G   D   + T+I  F +
Sbjct: 488 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCR 547

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A    +++   G      ++NTLI  +  +  +  A  + DEM  +G   D YT
Sbjct: 548 NGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYT 607

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           + +LIDG CK  N+  A +HL  M K GF  ++  +  +++ L  + ++  A+ +   M
Sbjct: 608 YRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIM 666



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 138/280 (49%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N ++ GLC      +AL++   + + G  P++ TYNI+I GLCK G +  A 
Sbjct: 356 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 415

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ +    G+ P+  T+ T++    +  K    L+++  M   G   D   Y +V+   
Sbjct: 416 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGL 475

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++ E  +  ++M+  G   + ++YN LI  +C+  K+E A  ++ +M ++G   D 
Sbjct: 476 CKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDA 535

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +   LI G C+ G+++GA L  + + + G+ +  + +N ++        +  A  +F+ 
Sbjct: 536 VSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDE 595

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           M  K    DS+TY  ++   CK   +  A   L+  +K G
Sbjct: 596 MLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 635



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 104/210 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T+N +LNGLCK    +     F+ +   G  P  +TYNILI+  C++ ++  A 
Sbjct: 461 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEAS 520

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ ++   G  P+A+++ T++    RN   +    +   ++ KGY+     + T+I AF
Sbjct: 521 KVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 580

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                +  A    ++M++ G + D  +Y  LI+  CK   ++ AY+ L EM K+GF    
Sbjct: 581 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSM 640

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            T   +I+ L     +  A   +  M KIG
Sbjct: 641 STFGRVINSLTVNHRVFQAVGIIHIMVKIG 670



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 133/326 (40%), Gaps = 38/326 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    +N +++ L    Y D A +++  +   G  P+L T+ I ++  C   R   A  
Sbjct: 82  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALR 141

Query: 67  ILKELGDSGHA-------------------------------PNAITYTTIMKC-CFRNR 94
           +L+ L   G                                 PN   +  ++   C R  
Sbjct: 142 LLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGD 201

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
             + GL +L  + ++G + + F Y   I    + GRL EA   ++ M    V  D+V+YN
Sbjct: 202 VLEAGL-LLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYN 259

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           TLI   CK+   + A   L  M  QG   D +T+  +IDG CK   ++ A   L+     
Sbjct: 260 TLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK 319

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           GF  +   Y  +++ L  +G ++ A+ +F   + K    D   Y+S+V  LC    +  A
Sbjct: 320 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 379

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGL 296
            +++    + G          V++GL
Sbjct: 380 LQVMNEMAEEGCHPDIQTYNIVINGL 405



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 123/273 (45%), Gaps = 9/273 (3%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A+  F  +      P    YN ++  L  A     A  +   +  +G +P+  T+T  +
Sbjct: 68  DAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRL 127

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           +      +  + L +L A+  +G       YCTV+      G   +A    +QM+   V 
Sbjct: 128 RSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVF 183

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            ++ ++N +++  CK G +  A LLL ++ ++G   + +T+ I I GLC+AG +  A   
Sbjct: 184 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 243

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           ++ M       ++  YN ++  L K      A++    M     + D FTY++++   CK
Sbjct: 244 VDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 302

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              +  A++LL   +  G    +    ++++GL
Sbjct: 303 ISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 335



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 74/158 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NI++   C++   + A ++   + + G  P+ V++N LI G C+ G 
Sbjct: 491 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 550

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + ++L + G++  A T+ T++          +  +I   M  KG+  D + Y  
Sbjct: 551 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 610

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
           +I    K   +  A  ++ +M+  G    + ++  +IN
Sbjct: 611 LIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVIN 648



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 35/192 (18%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y   I A+ + GRL++A D  E+M          +YN +++        + A+ +   M 
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 112

Query: 178 KQGFECDKYTHTI-------------------------------LIDGLCKAGNIKGARL 206
             G   D +THTI                               ++ GL   G+   AR 
Sbjct: 113 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQ 172

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVKDSFTYSSMVHNLC 262
             + M       NL A+N ++  L K G +  A      V +     + FTY+  +  LC
Sbjct: 173 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 232

Query: 263 KAKRLPSASKLL 274
           +A RLP A +L+
Sbjct: 233 EAGRLPEAVRLV 244


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ +++G C     ++A+ +F  +      P++ T++IL+ G CK GR
Sbjct: 222 MVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGR 281

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ +L  +   G  P+ +TY ++M      ++      I + M + G T +   Y  
Sbjct: 282 VKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNI 341

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F KI ++ EA +  ++M    +  D+V+YN+LI+  CK GK+  A  L+DEM  +G
Sbjct: 342 MINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRG 401

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              DK T+  ++D LCK   +  A   L  M   G   ++  Y  ++D L K G++  A 
Sbjct: 402 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQ 461

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           N+FE + VK      +TY+ M+   C       A  LL
Sbjct: 462 NIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALL 499



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   ++ GLC       AL     +   GF    V Y  LI GLCK G+   A  +
Sbjct: 124 PNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQL 183

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN + Y TI+    + +      ++ S M  KG + D   Y  +I+ F  
Sbjct: 184 LRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCI 243

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L +A     +M+++ +  D+ +++ L++ +CKEG+++ A  +L  M KQG + D  T
Sbjct: 244 LGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVT 303

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A+     M + G  +N+++YN +++   K  K+D A+N+F+ M 
Sbjct: 304 YCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMH 363

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               + D  TY+S++  LCK+ ++  A KL+      GV   K    +++D L
Sbjct: 364 CKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDAL 416



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 149/312 (47%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++ +CK +  + A  ++  +   G  P++VTY+ LI G C  G+L  A 
Sbjct: 192 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAI 251

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+  T++ ++    +  + K    +L+ M ++G   D   YC+++  +
Sbjct: 252 GLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGY 311

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             + ++ +A      M   GV  ++ SYN +IN +CK  K++ A  L  EM  +    D 
Sbjct: 312 CLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDV 371

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDGLCK+G I  A   ++ M+  G   +   YN I+D L K+ ++D AI +   
Sbjct: 372 VTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTK 431

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      D +TY+ ++  LCK  RL  A  +    L  G  I       ++ G   +  
Sbjct: 432 MKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDL 491

Query: 302 RREAKKIQSKIR 313
             +A  + SK+ 
Sbjct: 492 FDKALALLSKME 503



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 139/286 (48%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TF+I+++G CK      A  +   + K G  P++VTY  L+ G C   +
Sbjct: 257 MISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQ 316

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ I   +   G   N  +Y  ++    + +K    + +   M  K    D   Y +
Sbjct: 317 VNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNS 376

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++  A   +++M   GV  D ++YN++++  CK  +++ A  LL +M+ +G
Sbjct: 377 LIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEG 436

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D YT+TILIDGLCK G +K A+   E +   G++  +  Y  ++     +   D A+
Sbjct: 437 IQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKAL 496

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME    + ++ TY  ++ +L +      A KLL   +  G+
Sbjct: 497 ALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGL 542



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 124/282 (43%), Gaps = 41/282 (14%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    F  +L  L K      A+ + R ++ +G   +LVT+NILI    + G    +  
Sbjct: 53  TPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFS 112

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   +   G+ PNAIT T                                   T+I    
Sbjct: 113 VFANILKKGYEPNAITLT-----------------------------------TLIKGLC 137

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G++ +A  + +++V  G  L+ V Y TLIN  CK G+  AA  LL  ++ +  + +  
Sbjct: 138 LKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVV 197

Query: 187 THTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  +ID +CK   +  A  L+ E ++K G   ++  Y+ ++      GK++ AI +F  
Sbjct: 198 MYNTIIDSMCKVKLVNEAFDLYSEMVSK-GISPDVVTYSALISGFCILGKLNDAIGLFNK 256

Query: 246 M---EV-KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M   E+  D +T+S +V   CK  R+  A  +L   +K G++
Sbjct: 257 MISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIK 298



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+ I+++GLCK     +A  +F  L   G+   + TY ++I+G C       A 
Sbjct: 437 IQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKAL 496

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
            +L ++ D+G  PNA TY  I+   F   +  +  ++L  M  +G  F
Sbjct: 497 ALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLLF 544


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 154/305 (50%), Gaps = 5/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NI + GLC+      A+R+  G++ +  VP++VTYN LI+GLCK    + A   L+ +
Sbjct: 224 TYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRM 282

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+  TY TI+    +    +   E+L     KG+  D   YC++I      G +
Sbjct: 283 MNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 342

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A +   +    G++ DIV YN+L+   C +G +  A  +++EM ++G   D  T+ I+
Sbjct: 343 ERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 402

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I+GLCK GNI  A + +      G+  ++  +N ++D   K  K+D A+ + E M     
Sbjct: 403 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 462

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+ TY+S+++ LCKA ++   ++     +  G          +++    S    EA K
Sbjct: 463 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 522

Query: 308 IQSKI 312
           +  K+
Sbjct: 523 VIVKM 527



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 138/281 (49%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N ++ GLCK      A+   R +   G +P+  TYN +I G CK   ++ A  
Sbjct: 253 VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 312

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK+    G  P+ +TY +++         +  LE+ +  + KG   D   Y +++    
Sbjct: 313 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 372

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G +  A   M +M  +G   DI +YN +IN  CK G +  A +++++   +G+  D +
Sbjct: 373 LQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF 432

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   LIDG CK   +  A   +E M + G   +   YN +++ L K GK++     F+ M
Sbjct: 433 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 492

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +K    +  TY+ ++ N C++ ++  ASK+++   + G+ 
Sbjct: 493 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 533



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 125/239 (52%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN +++G CK    D+AL++   + ++G  P+ +TYN ++ GLCKAG++      
Sbjct: 429 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 488

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  PN ITY  +++   R+ K +   +++  M ++G   D   + T+I  F +
Sbjct: 489 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCR 548

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A    +++   G      ++NTLI  +  +  +  A  + DEM  +G   D YT
Sbjct: 549 NGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYT 608

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           + +LIDG CK  N+  A +HL  M K GF  ++  +  +++ L  + ++  A+ +   M
Sbjct: 609 YRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIM 667



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 138/280 (49%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N ++ GLC      +AL++   + + G  P++ TYNI+I GLCK G +  A 
Sbjct: 357 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 416

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ +    G+ P+  T+ T++    +  K    L+++  M   G   D   Y +V+   
Sbjct: 417 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGL 476

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++ E  +  ++M+  G   + ++YN LI  +C+  K+E A  ++ +M ++G   D 
Sbjct: 477 CKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDA 536

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +   LI G C+ G+++GA L  + + + G+ +  + +N ++        +  A  +F+ 
Sbjct: 537 VSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDE 596

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           M  K    DS+TY  ++   CK   +  A   L+  +K G
Sbjct: 597 MLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 636



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 104/210 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T+N +LNGLCK    +     F+ +   G  P  +TYNILI+  C++ ++  A 
Sbjct: 462 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEAS 521

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ ++   G  P+A+++ T++    RN   +    +   ++ KGY+     + T+I AF
Sbjct: 522 KVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 581

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                +  A    ++M++ G + D  +Y  LI+  CK   ++ AY+ L EM K+GF    
Sbjct: 582 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSM 641

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            T   +I+ L     +  A   +  M KIG
Sbjct: 642 STFGRVINSLTVNHRVFQAVGIIHIMVKIG 671



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 133/326 (40%), Gaps = 38/326 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    +N +++ L    Y D A +++  +   G  P+L T+ I ++  C   R   A  
Sbjct: 83  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALR 142

Query: 67  ILKELGDSGHA-------------------------------PNAITYTTIMKC-CFRNR 94
           +L+ L   G                                 PN   +  ++   C R  
Sbjct: 143 LLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGD 202

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
             + GL +L  + ++G + + F Y   I    + GRL EA   ++ M    V  D+V+YN
Sbjct: 203 VLEAGL-LLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYN 260

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           TLI   CK+   + A   L  M  QG   D +T+  +IDG CK   ++ A   L+     
Sbjct: 261 TLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK 320

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           GF  +   Y  +++ L  +G ++ A+ +F   + K    D   Y+S+V  LC    +  A
Sbjct: 321 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 380

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGL 296
            +++    + G          V++GL
Sbjct: 381 LQVMNEMAEEGCHPDIQTYNIVINGL 406



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 123/273 (45%), Gaps = 9/273 (3%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A+  F  +      P    YN ++  L  A     A  +   +  +G +P+  T+T  +
Sbjct: 69  DAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRL 128

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           +      +  + L +L A+  +G       YCTV+      G   +A    +QM+   V 
Sbjct: 129 RSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVF 184

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            ++ ++N +++  CK G +  A LLL ++ ++G   + +T+ I I GLC+AG +  A   
Sbjct: 185 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 244

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           ++ M       ++  YN ++  L K      A++    M     + D FTY++++   CK
Sbjct: 245 VDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 303

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              +  A++LL   +  G    +    ++++GL
Sbjct: 304 ISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 336



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 74/158 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NI++   C++   + A ++   + + G  P+ V++N LI G C+ G 
Sbjct: 492 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 551

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + ++L + G++  A T+ T++          +  +I   M  KG+  D + Y  
Sbjct: 552 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 611

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
           +I    K   +  A  ++ +M+  G    + ++  +IN
Sbjct: 612 LIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVIN 649



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 35/192 (18%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y   I A+ + GRL++A D  E+M          +YN +++        + A+ +   M 
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 113

Query: 178 KQGFECDKYTHTI-------------------------------LIDGLCKAGNIKGARL 206
             G   D +THTI                               ++ GL   G+   AR 
Sbjct: 114 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQ 173

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVKDSFTYSSMVHNLC 262
             + M       NL A+N ++  L K G +  A      V +     + FTY+  +  LC
Sbjct: 174 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 233

Query: 263 KAKRLPSASKLL 274
           +A RLP A +L+
Sbjct: 234 EAGRLPEAVRLV 245


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 160/345 (46%), Gaps = 39/345 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  +LNG C+     +AL MF  + + G+ P +V YN +I GLCK+ ++  A  +
Sbjct: 149 PDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDL 208

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G  P+A+TY +++     + ++     ++S M ++    D F +  +I A VK
Sbjct: 209 LNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVK 268

Query: 128 IGRLKEATDYMEQ-----------------------------------MVTDGVQLDIVS 152
            GR+ EA +  E+                                   MV+ G   D+V+
Sbjct: 269 EGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVT 328

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           Y+ LIN YCK  K+E    L  EM ++G   +  T+T+LI G C+AG +  A    ++M 
Sbjct: 329 YSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMV 388

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
             G   N+  YN ++  L  +GKI+ A+ +   M+      D  TY+ ++  +CKA  + 
Sbjct: 389 FCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVA 448

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            A  L  S    G+        A++ GL   G R EA  +  K++
Sbjct: 449 DAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMK 493



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 144/293 (49%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NI+LN  C+      AL     + K G  P++VT+  L+ G C+  R+  A ++   +
Sbjct: 118 TCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRM 177

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ PN + Y TI+    ++++    L++L+ M+  G   D   Y ++I+     GR 
Sbjct: 178 VEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRW 237

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +AT  +  M    +  D+ ++N LI+   KEG++  A  L +EM ++  + D  T+++L
Sbjct: 238 DDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLL 297

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I GLC    +  A     +M   G   ++  Y+ +++   K  K++H + +F  M     
Sbjct: 298 IYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGV 357

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           V+++ TY+ ++   C+A +L  A ++    +  GV         ++ GL  +G
Sbjct: 358 VRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNG 410



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 125/243 (51%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   TFN +++   K      A  ++  + +    P++VTY++LI GLC   RL  A
Sbjct: 251 EIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEA 310

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +   +   G  P+ +TY+ ++    +++K + G+++   M ++G   +   Y  +I  
Sbjct: 311 EQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQG 370

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + + G+L  A +  + MV  GV  +I++YN L++  C  GK+E A ++L +M+K G + D
Sbjct: 371 YCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDAD 430

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ I+I G+CKAG +  A      +N  G   ++  Y  ++  L K G    A  +F 
Sbjct: 431 IVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFR 490

Query: 245 SME 247
            M+
Sbjct: 491 KMK 493



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 140/305 (45%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  A F+ +L+ + K +  D  + ++  +Q  G    L T NIL+   C+  +L  A   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+ +T+ +++    R  +    L +   M   GY  +   Y T+I    K
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A D + +M  DG++ D V+YN+LI+  C  G+ + A  ++  M K+    D +T
Sbjct: 199 SKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFT 258

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LID   K G I  A    E M +   D ++  Y+ ++  L    ++D A  +F  M 
Sbjct: 259 FNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMV 318

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D  TYS +++  CK+K++    KL     + GV         ++ G   +G   
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLN 378

Query: 304 EAKKI 308
            A++I
Sbjct: 379 VAEEI 383



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 122/252 (48%), Gaps = 4/252 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D++L +F  + +   +P +  ++ L+  + K  +     ++ +++   G   N  T   +
Sbjct: 63  DDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNIL 122

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  +  L L  L  M + G+  D   + +++  F +  R+ +A    ++MV  G 
Sbjct: 123 LNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGY 182

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + ++V YNT+I+  CK  +++ A  LL+ ME  G   D  T+  LI GLC +G    A  
Sbjct: 183 EPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATR 242

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            +  M K     ++  +N ++D   K+G+I  A  ++E M  +    D  TYS +++ LC
Sbjct: 243 MVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLC 302

Query: 263 KAKRLPSASKLL 274
              RL  A ++ 
Sbjct: 303 MYSRLDEAEQMF 314



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 89/173 (51%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I++NG CK++  ++ +++F  + + G V   VTY +LI+G C+AG+L  A  I
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEI 383

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K +   G  PN ITY  ++     N K +  L IL+ M++ G   D   Y  +I    K
Sbjct: 384 FKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCK 443

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            G + +A D    +   G+  DI +Y  ++    K+G    A  L  +M++ G
Sbjct: 444 AGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDG 496



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 101/244 (41%), Gaps = 40/244 (16%)

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
           R+ Y+  G  Y  ++   ++  +L ++ D    MV       I  ++ L++   K  K +
Sbjct: 40  RRAYS-GGSDYREMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYD 98

Query: 168 AAYLLLDEMEKQGFECDKYTHTILI----------------------------------- 192
               L ++M+  G   +  T  IL+                                   
Sbjct: 99  VVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLL 158

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           +G C+   I  A    + M ++G++ N+  YN I+D L K  ++D+A+++   MEV    
Sbjct: 159 NGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIR 218

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D+ TY+S++  LC + R   A++++    K  +        A++D     G   EA+++
Sbjct: 219 PDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEEL 278

Query: 309 QSKI 312
             ++
Sbjct: 279 YEEM 282



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+NI++ G+CK     +A  ++  L   G  P++ TY  ++ GL K G    A  + ++
Sbjct: 432 VTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRK 491

Query: 71  LGDSGHAPN 79
           + + G  PN
Sbjct: 492 MKEDGILPN 500


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 39/305 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNI+++  C+N   D  + +   + +HG +P+++TY  +I G CK G +  A  +LK +
Sbjct: 406 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 465

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN I+YT ++K                            G C+         R 
Sbjct: 466 TACGCKPNTISYTIVLK----------------------------GLCSA-------ERW 490

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D M QM+  G  L+ +++NTLIN  CK+G +E A  LL +M   G   D  +++ +
Sbjct: 491 VDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTV 550

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGL KAG    A   L  M   G   N   Y+ I   L ++G+I+  I +F++++    
Sbjct: 551 IDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTI 610

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+  Y++++ +LCK      A + L   + SG    +S    ++ GL   G  +EA++
Sbjct: 611 RSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQE 670

Query: 308 IQSKI 312
           + +++
Sbjct: 671 MLTEL 675



 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 137/272 (50%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFN +++ LC+N   +    +   + +HG  P++  Y  +I G+CK G L  A  
Sbjct: 296 PPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHE 355

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL  +   G  PN + Y T++K      +++   E+L+ M  K    D   +  ++  F 
Sbjct: 356 ILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFC 415

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G +    + +EQM+  G   D+++Y T+IN +CKEG ++ A +LL  M   G + +  
Sbjct: 416 QNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTI 475

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++TI++ GLC A     A   +  M + G   N   +N +++ L K G ++ AI + + M
Sbjct: 476 SYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM 535

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            V     D  +YS+++  L KA +   A +LL
Sbjct: 536 LVNGCSPDLISYSTVIDGLGKAGKTDEALELL 567



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 138/272 (50%), Gaps = 4/272 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N++LN +C     D AL + R L   G  P++V+YN ++KGLC A R    + +++E+  
Sbjct: 233 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 292

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
               PN +T+ T++    RN  ++   E+L+ M   G T D   Y T+I    K G L+ 
Sbjct: 293 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEV 352

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A + + +M + G++ ++V YNTL+   C   + E    LL EM  +    D  T  IL+D
Sbjct: 353 AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVD 412

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----K 249
             C+ G +      LE M + G   ++  Y  +++   K+G ID A+ + +SM       
Sbjct: 413 FFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 472

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++ +Y+ ++  LC A+R   A  L+   ++ G
Sbjct: 473 NTISYTIVLKGLCSAERWVDAEDLMSQMIQQG 504



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 112/252 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NG CK    D A+ + + +   G  P  ++Y I++KGLC A R   A  +
Sbjct: 437 PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDL 496

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G   N IT+ T++    +    +  +E+L  M   G + D   Y TVI    K
Sbjct: 497 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 556

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  EA + +  MV  G+  + + Y+++ +   +EG++     + D ++      D   
Sbjct: 557 AGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVL 616

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I  LCK G  + A   L YM   G   N   Y  ++  L  +G +  A  +   + 
Sbjct: 617 YNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELC 676

Query: 248 VKDSFTYSSMVH 259
            K +     M H
Sbjct: 677 SKGALRKHLMKH 688



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 146/350 (41%), Gaps = 47/350 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++  LC      +AL +   + + G  P    Y+++++  C+ G  R+A 
Sbjct: 155 VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAV 214

Query: 66  WILKELGDSGHA-----------------------------------PNAITYTTIMKCC 90
            +L++L   G A                                   P+ ++Y  ++K  
Sbjct: 215 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGL 274

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
              +++    E++  M R     +   + T+I+   + G  +   + + QMV  G   DI
Sbjct: 275 CMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDI 334

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
             Y T+I+  CKEG LE A+ +L+ M   G + +   +  L+ GLC A   +     L  
Sbjct: 335 RMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAE 394

Query: 211 MNKIGFDSNLE----AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
           M    FD +       +N +VD   ++G +D  I + E M     + D  TY+++++  C
Sbjct: 395 M----FDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFC 450

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           K   +  A  LL S    G +    +   V+ GL  +    +A+ + S++
Sbjct: 451 KEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 500



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 9/267 (3%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N M+ G C+    ++A R+   +      P   TY  +++ LC  GR+  A  +L E+ 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT-VIAAFVKIGRL 131
             G AP    Y  I++   R   ++  + +L  +  +G   D  G C  V+ A    G +
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALD-VGNCNLVLNAICDQGSV 245

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA   +  + + G + D+VSYN ++   C   +      L++EM +     +  T   L
Sbjct: 246 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 305

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           I  LC+ G  +     L  M + G   ++  Y  I+D + K+G ++ A  +   M     
Sbjct: 306 ISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGL 365

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLL 274
             +   Y++++  LC A+R     +LL
Sbjct: 366 KPNVVCYNTLLKGLCSAERWEETEELL 392



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 64/145 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   +++ +++GL K   TD AL +   +   G  P  + Y+ +   L + GR
Sbjct: 535 MLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGR 594

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +   + D+    +A+ Y  ++    +  + +  +E L+ M   G   +   Y  
Sbjct: 595 INKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTI 654

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDG 145
           +I      G +KEA + + ++ + G
Sbjct: 655 LIRGLASEGFVKEAQEMLTELCSKG 679


>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 566

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 155/313 (49%), Gaps = 4/313 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N++L GLCK   T++A+R+FR L   GF P +V+YNIL++ LC  GR   A  +
Sbjct: 235 PNLVSYNVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVL 294

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+     +P+ +TY  ++     + + +  LE+L  M R  +      Y  +IA   K
Sbjct: 295 LAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCK 354

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L      ++QM+      +  +YN +  L C+EG ++ A+ ++  +  +     +  
Sbjct: 355 DGKLDLVVKCLDQMMYRHCNPNEGTYNAIATL-CEEGMVQEAFSIIQSLGNKQHSSTQEF 413

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + I+I  LC+ GN   A   L  M K GF  +   Y+ ++  L  +G ++ AI +F  ME
Sbjct: 414 YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVME 473

Query: 248 V---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                D+  Y+S++   CK++R   A  +    +  G    ++    +V+G+ H      
Sbjct: 474 ENNKPDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDL 533

Query: 305 AKKIQSKIRMAKI 317
           A K+  ++++  +
Sbjct: 534 ATKVLRELQLRDV 546



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 120/246 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P  +++  +++ LC+      A+++   ++++G+    VTYN L++GLC  G 
Sbjct: 123 MIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGN 182

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  +  +L  L   G  PNA TY+ +++  ++ R      ++L  +  KG   +   Y  
Sbjct: 183 LTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNV 242

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K GR ++A     ++ + G   ++VSYN L+   C EG+ E A +LL EM    
Sbjct: 243 LLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDE 302

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ ILI  L   G  + A   LE M +  F     +YN I+  L KDGK+D  +
Sbjct: 303 RSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVV 362

Query: 241 NVFESM 246
              + M
Sbjct: 363 KCLDQM 368



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 135/268 (50%), Gaps = 10/268 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  LCK      A+++   +   G +P+  +Y  L+  LC+ G +  A  ++ ++ + G
Sbjct: 103 LLYDLCKACKMRKAIKVMEMMIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYG 162

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           +  N +TY ++++    +      L++L  + +KG   + + Y  ++ A  K     EA+
Sbjct: 163 YPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEAS 222

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             +++++  G + ++VSYN L+   CKEG+ E A  L  E+  +GF  +  ++ IL+  L
Sbjct: 223 KLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSL 282

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF--- 252
           C  G  + A + L  MN      +   YN ++  L   G+ +HA+ V E M ++  F   
Sbjct: 283 CNEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEM-IRARFKPT 341

Query: 253 --TYSSMVHNLCKAKRLPSASKLLLSCL 278
             +Y+ ++ +LCK  +L     L++ CL
Sbjct: 342 ASSYNPIIAHLCKDGKL----DLVVKCL 365



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 135/282 (47%), Gaps = 7/282 (2%)

Query: 24  RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 83
           R TD A      + + G  P++     L+  LCKA ++R A  +++ +  SG  P+A +Y
Sbjct: 77  RLTD-AFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDASSY 135

Query: 84  TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
           T ++    R       ++++  M+  GY  +   Y +++      G L ++   +++++ 
Sbjct: 136 TFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQ 195

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            G+  +  +Y+ L+    KE   + A  LLDE+  +G E +  ++ +L+ GLCK G  + 
Sbjct: 196 KGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTED 255

Query: 204 A-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 258
           A RL  E  +K GF  N+ +YN ++  L  +G+ + A  +   M        + TY+ ++
Sbjct: 256 AIRLFRELPSK-GFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILI 314

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +L    R   A ++L   +++  +   S+   ++  L   G
Sbjct: 315 GSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDG 356



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 7/145 (4%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           + I++  LC+   T  A ++   + K+GF P+  TY+ LI+GLC  G L  A  I   + 
Sbjct: 414 YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM- 472

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +  + P+   Y +++  C ++R+  L L++   M  KGY  +   Y  ++   +    + 
Sbjct: 473 EENNKPDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMD 532

Query: 133 EATDYMEQMVTDGVQL-DIVSYNTL 156
            AT  + ++     QL D++S +TL
Sbjct: 533 LATKVLREL-----QLRDVISQSTL 552



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP + T++ ++ GLC     + A+ +F  ++++   P+   YN LI G CK+ R   A 
Sbjct: 442 FTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENN-KPDTENYNSLILGCCKSRRTDLAL 500

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
            + + +   G+ PN  TYT +++     ++  L  ++L  ++
Sbjct: 501 DVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLRELQ 542


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    +   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 VLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M+  G++ D  +Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 117/220 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D F Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
            + +  T+T++I+  CK G++      L+ M + G+  ++
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSV 416



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 140/300 (46%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A +L DEM  +G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D FTY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 120/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A    ++M+  G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M   G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G +     +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ P+ +T
Sbjct: 407 MQRDGYKPSVVT 418


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 160/382 (41%), Gaps = 74/382 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T NIM++ LCK +  D+A  +F GL      P+ VTY  LI+GL + GR+  A 
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAY 499

Query: 66  WILKELGDSGHAPNAITYT-----------------------------------TIMKCC 90
            + +++ D+   PNA+ YT                                   T M C 
Sbjct: 500 KLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCV 559

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           F+  + + G  +   +K  G+  D   Y  +I   VK G   EA +    M   G  LD 
Sbjct: 560 FKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDT 619

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT----------------------- 187
            +YNT+I+ +CK GK+  AY LL+EM+ +G E    T                       
Sbjct: 620 RAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 679

Query: 188 ------------HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
                       ++ LIDG  K G I  A L +E + + G   N+  +NC++D L K  +
Sbjct: 680 AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 739

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           I  A+  F+SM+      +  TYS ++H LCK ++   A        K G +        
Sbjct: 740 ISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTT 799

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           ++ GL  +G   EA  +  K +
Sbjct: 800 MISGLAKAGNIVEADTLFEKFK 821



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 156/353 (44%), Gaps = 40/353 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P     N  ++ + K    +    +F+ ++  GF+P+  +Y ILI GL KAG    A  
Sbjct: 546 SPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYE 605

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   + + G   +   Y T++    ++ K     ++L  MK KG+      Y +VI    
Sbjct: 606 LFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLA 665

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KI RL EA    E+  + G++L++V Y++LI+ + K G+++ AYL+++E+ ++G   + Y
Sbjct: 666 KIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVY 725

Query: 187 -----------------------------------THTILIDGLCKAGNIKGARLHLEYM 211
                                              T++ILI GLCK      A +  + M
Sbjct: 726 TWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEM 785

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            K GF  N+  Y  ++  L K G I  A  +FE  +    V DS  Y++++  L  A R 
Sbjct: 786 QKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRA 845

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR-MAKISH 319
             A +L       G  I       ++D L  + C  +A  + + +R  AK  H
Sbjct: 846 SDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQH 898



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 149/344 (43%), Gaps = 40/344 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L+ L +    D AL+ F  ++K   +P L TYNI+I  LCKAG+L TA  +
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA-IPNLSTYNIMIDMLCKAGKLETALVV 431

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + D+G  PN IT   ++    + ++      I   +  K    D   YC++I    +
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 128 IGRLKEATDYMEQMV------------------------TDGVQL-----------DIVS 152
            GR+ EA    EQM+                         DG ++           D++ 
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
            NT ++   K G++E    L  E++  GF  D  ++TILI GL KAG    A      M 
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMK 611

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLP 268
           + G   +  AYN ++D   K GK++ A  + E M+ K       TY S++  L K  RL 
Sbjct: 612 EQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLD 671

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            A  L       G+ +      +++DG    G   EA  I  ++
Sbjct: 672 EAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 715



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 5/285 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P    +N+ ++   K    D A + F  ++ +G V + VTY  +I  LCKA R
Sbjct: 261 MKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADR 320

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + + +  +   P A  Y T++       K++    +L   +RKG       Y  
Sbjct: 321 LNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNC 380

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++   + G++ EA    E+M  D +  ++ +YN +I++ CK GKLE A ++ D M+  G
Sbjct: 381 ILSCLGRKGQVDEALKKFEEMKKDAIP-NLSTYNIMIDMLCKAGKLETALVVRDAMKDAG 439

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T  I++D LCKA  +  A    E ++      +   Y  +++ LG+ G++D A 
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAY 499

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            ++E M    ++ ++  Y+S++ N  K  R     K+    L+ G
Sbjct: 500 KLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLG 544



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 139/303 (45%), Gaps = 19/303 (6%)

Query: 22  KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81
           K+R    A    + ++K  F P    Y  LI  L  +        + +++ + G+A N  
Sbjct: 177 KSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVH 236

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
            +TT+++   R  +    L +L  MK      D   Y   I  F K G++  A     +M
Sbjct: 237 LFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEM 296

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
             +G+ LD V+Y ++I + CK  +L  A  L + M++       Y +  +I G   AG  
Sbjct: 297 KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKF 356

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSMV 258
           + A   LE   + G   ++ +YNCI+  LG+ G++D A+  FE M+   + +  TY+ M+
Sbjct: 357 EDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMI 416

Query: 259 HNLCKAKRLPSA---------SKLLLSCLKSGVRI--LKSAQK-----AVVDGLRHSGCR 302
             LCKA +L +A         + L  + +   + +  L  AQ+     ++ +GL H  CR
Sbjct: 417 DMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCR 476

Query: 303 REA 305
            +A
Sbjct: 477 PDA 479



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 80/203 (39%), Gaps = 39/203 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   T+N +L+ L K      AL  F+ ++     P  +TY+ILI GLCK  +   A 
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+   G  PN  TYTT+                                   I+  
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTM-----------------------------------ISGL 804

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + EA    E+    G   D   YN +I       +   AY L +E   +G  C  
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKG--CSI 862

Query: 186 YTHT--ILIDGLCKAGNIKGARL 206
           YT T  +L+D L KA  I+ A +
Sbjct: 863 YTKTCVVLLDSLHKAECIEQAAI 885


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 171/326 (52%), Gaps = 8/326 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N+++NG+CK    D A      + K+G V  + TYNIL++ L   G+
Sbjct: 242 MLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGK 301

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ ++   G  PN ITY+T++    R+ K      +L  MK K    DG+ Y  
Sbjct: 302 WEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDP 361

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+A  + G++  A ++++ M++ G   DI+SYN+++   CK G  + A  + +++ + G
Sbjct: 362 LISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVG 421

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  ++  L   L  +G+ I+   + LE ++  G D +   YN ++  L +DG +D A
Sbjct: 422 CPPNAGSYNTLFGALWSSGDKIRALGMILEMLSN-GIDPDEITYNSLISCLCRDGLVDQA 480

Query: 240 I----NVFESMEVKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           I    ++FES + + +  +Y++++  LCK +R+  A ++L + +  G    ++    ++ 
Sbjct: 481 IELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQ 540

Query: 295 GLRHSGCRREAKKIQS-KIRMAKISH 319
           G+  +G R +A ++ +  + M  IS 
Sbjct: 541 GIGFAGWRYDAMELANLLVNMDAISE 566



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 4/260 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G CK    D+A ++   ++K GF P++VTYNILI   C  GRL  A  +
Sbjct: 144 PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRV 203

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + +L      P  ITYT +++           +++L  M  +G   D + Y  V+    K
Sbjct: 204 MDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCK 263

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L  A +++ ++  +G    + +YN L+     EGK E    L+ +M  +G E +  T
Sbjct: 264 EGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPIT 323

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           ++ LI  LC+ G I  A+  L+ M +     +  +Y+ ++  L ++GK+D AI   + M 
Sbjct: 324 YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMI 383

Query: 247 ---EVKDSFTYSSMVHNLCK 263
               + D  +Y+S++ +LCK
Sbjct: 384 SGGHLPDILSYNSILASLCK 403



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 130/262 (49%), Gaps = 5/262 (1%)

Query: 17  LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76
           LN  CK+   D +L   + +   G+ P+++    LIKG     ++  A  +++ L   G 
Sbjct: 84  LNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHGK 143

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
            P+   Y  ++    +  +     ++L  MK++G+  D   Y  +I  F   GRL  A  
Sbjct: 144 -PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALR 202

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
            M+Q++ D  +  +++Y  LI     +G ++ A  LLDEM  +G   D+YT+ ++++G+C
Sbjct: 203 VMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMC 262

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSF 252
           K G +  A   L  ++K G  + +  YN ++  L  +GK ++   +   M VK    +  
Sbjct: 263 KEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPI 322

Query: 253 TYSSMVHNLCKAKRLPSASKLL 274
           TYS+++  LC+  ++  A  +L
Sbjct: 323 TYSTLITALCRDGKIDEAKNVL 344



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 85  TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           T+ + C ++ KY   L  L  M  +GY  D      +I  F  + ++++A   ME +   
Sbjct: 83  TLNRSC-KSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKH 141

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G + D+ +YN +I+ +CK  +++ A  +LD M+K+GFE D  T+ ILI   C  G +  A
Sbjct: 142 G-KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLA 200

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
              ++ + K      +  Y  +++     G ID A+ + + M  +    D +TY+ +V+ 
Sbjct: 201 LRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNG 260

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +CK   L  A + L    K+G     S    ++  L + G     +K+ S +
Sbjct: 261 MCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDM 312



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 7/209 (3%)

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
           + Y F    +   +    K  +  E+  +++ MV  G + D++    LI  +    K+E 
Sbjct: 71  QDYDFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEK 130

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  +++ +EK G + D + +  +I G CKA  +  A   L+ M K GF+ ++  YN ++ 
Sbjct: 131 AIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIG 189

Query: 229 RLGKDGKIDHAINVFESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                G++D A+ V + + +KD+      TY+ ++        +  A KLL   L  G+R
Sbjct: 190 NFCGRGRLDLALRVMDQL-LKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLR 248

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             +     VV+G+   G    A +  S+I
Sbjct: 249 PDRYTYNVVVNGMCKEGMLDRAFEFLSRI 277


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 153/314 (48%), Gaps = 4/314 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +      ++ +++ LCK R+ D+AL +F  +   G  P++ TY+ LI  LC  GR   
Sbjct: 234 GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSD 293

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++ +    PN +T+ +++    +  K     ++   M ++    +   Y ++I 
Sbjct: 294 ASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLIN 353

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA      MV+     D+V+YNTLIN +CK  K+     L  +M ++G   
Sbjct: 354 GFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVG 413

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+T LI G  +A +   A++  + M   G   N+  YN ++D L K+GK++ A+ VF
Sbjct: 414 NTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 473

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++      D +TY+ M   +CKA ++     L  S    GV+    A   ++ G    
Sbjct: 474 EYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKK 533

Query: 300 GCRREAKKIQSKIR 313
           G + EA  +  K++
Sbjct: 534 GLKEEAYTLFIKMK 547



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 131/257 (50%), Gaps = 4/257 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN +++   K      A ++F  + +    P +VTYN LI G C   RL  A+
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 365

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   +      P+ +TY T++    + +K   G+E+   M R+G   +   Y T+I  F
Sbjct: 366 QIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGF 425

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +      A    +QMV+DGV  +I++YNTL++  CK GKLE A ++ + ++K   E D 
Sbjct: 426 FQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDI 485

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-- 243
           YT+ I+ +G+CKAG ++        ++  G   ++ AYN ++    K G  + A  +F  
Sbjct: 486 YTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIK 545

Query: 244 --ESMEVKDSFTYSSMV 258
             E   + DS TY++++
Sbjct: 546 MKEDGPLPDSGTYNTLI 562



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 135/267 (50%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NIM+N LC+      AL +   + K G+ P +VT N L+ G C   R+  A  ++ ++
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+ +T+TT++   F++ K    + ++  M  KG   D   Y  VI    K G  
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++ D+V Y+T+I+  CK   ++ A  L  EM+ +G   D +T++ L
Sbjct: 222 DLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + N+  +N ++D   K+GK+  A  +F+ M  +  
Sbjct: 282 ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 341

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             +  TY+S+++  C   RL  A ++ 
Sbjct: 342 DPNIVTYNSLINGFCMHDRLDEAQQIF 368



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 148/314 (47%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  +++GL ++     A+ +   +   G  P+LVTY  +I GLCK G    A  +
Sbjct: 168 PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNL 227

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++       + + Y+T++    + R     L + + M  KG   D F Y ++I+    
Sbjct: 228 LNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 287

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V++N+LI+ + KEGKL  A  L DEM ++  + +  T
Sbjct: 288 YGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVT 347

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+G C    +  A+     M       ++  YN +++   K  K+   + +F  M 
Sbjct: 348 YNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMS 407

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V ++ TY++++H   +A    +A  +    +  GV         ++DGL  +G   
Sbjct: 408 RRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 467

Query: 304 EAKKIQSKIRMAKI 317
           +A  +   ++ +K+
Sbjct: 468 KAMVVFEYLQKSKM 481



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 1/237 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   T+N ++NG CK +   + + +FR + + G V   VTY  LI G  +A  
Sbjct: 371 MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASD 430

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ + K++   G  PN +TY T++    +N K +  + +   +++     D + Y  
Sbjct: 431 CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNI 490

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +     K G++++  D    +   GV+ D+++YNT+I+ +CK+G  E AY L  +M++ G
Sbjct: 491 MSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDG 550

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
              D  T+  LI    + G+   +   ++ M    F  +   Y  + D L  DG++D
Sbjct: 551 PLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML-HDGRLD 606



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 131/279 (46%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N +LNG C       A+ +   + + G+ P+ VT+  L+ GL +  +   A  +
Sbjct: 133 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++ +   G  P+ +TY  ++    +  +  L L +L+ M++     D   Y TVI +  K
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCK 252

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A +   +M   G++ D+ +Y++LI+  C  G+   A  LL +M ++    +  T
Sbjct: 253 YRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT 312

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LID   K G +  A    + M +   D N+  YN +++      ++D A  +F  M 
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMV 372

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            KD      TY+++++  CKAK++    +L     + G+
Sbjct: 373 SKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGL 411



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 4/286 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D A+ +F  + K    P +V ++ L+  + K  +        +++   G + N  TY  +
Sbjct: 47  DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIM 106

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  +    L IL  M + GY        +++  F    R+ EA   ++QMV  G 
Sbjct: 107 INCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 166

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q D V++ TL++   +  K   A  L++ M  +G + D  T+  +I+GLCK G    A  
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 226

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L  M K   ++++  Y+ ++D L K   +D A+N+F  M+ K    D FTYSS++  LC
Sbjct: 227 LLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLC 286

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              R   AS+LL   L+  +        +++D     G   EA+K+
Sbjct: 287 NYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKL 332



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 5/212 (2%)

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           G ++DG+       A + + +L EA D   +MV       IV ++ L++   K  K +  
Sbjct: 26  GLSYDGYREKLSRNALLHL-KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLV 84

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
               ++ME  G   + YT+ I+I+ LC+   +  A   L  M K+G+  ++   N +++ 
Sbjct: 85  ISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNG 144

Query: 230 LGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
                +I  A+ + + M       D+ T++++VH L +  +   A  L+   +  G +  
Sbjct: 145 FCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD 204

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
                AV++GL   G    A  + +K+   KI
Sbjct: 205 LVTYGAVINGLCKRGEPDLALNLLNKMEKGKI 236



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N M++G CK    + A  +F  +++ G +P+  TYN LI+   + G    +  +
Sbjct: 518 PDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 577

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +KE+     A +A TY  +       R  K  LE+LS
Sbjct: 578 IKEMRSCRFAGDASTYGLVTDMLHDGRLDKGFLEVLS 614


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 123/245 (50%), Gaps = 1/245 (0%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   +FN ++NG  +    D   R+   +   G  P++ T  +LI GLCK  ++ 
Sbjct: 165 CG-LRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMD 223

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +  E+ D G  PN +T+TT++    ++ +  L LEI   M R+GY+ D   Y T+I
Sbjct: 224 EANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLI 283

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               + G LK+A D + +M   G++ D ++Y TLI+  CKEG LE A+ L   M ++   
Sbjct: 284 YGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIR 343

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D   +T LI GLC+ G    A   L  M  +G       Y  I++   K G +  A  +
Sbjct: 344 LDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKL 403

Query: 243 FESME 247
            + M+
Sbjct: 404 LKEMQ 408



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 113/208 (54%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T  +++NGLCK    D A  +F  +   G VP  VT+  LI G CK+GR+  A  I
Sbjct: 204 PDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEI 263

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++   G++P+ ITY T++    R    K   +++  M  KG   D   Y T+I    K
Sbjct: 264 YKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCK 323

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A +  ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G + +  T
Sbjct: 324 EGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGT 383

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +T++I+G CK G++K A   L+ M + G
Sbjct: 384 YTMIINGFCKQGDVKTASKLLKEMQRDG 411



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 138/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N LI G  + G L     +   + 
Sbjct: 139 FNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMH 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  T T ++    +  K     E+ + M  KG   +G  + T+I    K GR+ 
Sbjct: 199 ASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM+  G   D+++YNTLI   C++G L+ A  L+ EM  +G + DK T+T LI
Sbjct: 259 LALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G+++ A    + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 319 DGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            ++ TY+ +++  CK   + +ASKLL    + G
Sbjct: 379 PENGTYTMIINGFCKQGDVKTASKLLKEMQRDG 411



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 146/303 (48%), Gaps = 6/303 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T++    R      G  + +AM   G   D +    +I    K  ++ EA 
Sbjct: 167 LRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +   +M+  G+  + V++ TLI+ +CK G+++ A  +  +M +QG+  D  T+  LI GL
Sbjct: 227 ELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           C+ G++K AR  +  M+  G   +   Y  ++D   K+G ++ A       + ES+ + D
Sbjct: 287 CRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRL-D 345

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
              Y++++  LC+  R   A K+L   L  G++        +++G    G  + A K+  
Sbjct: 346 DVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLK 405

Query: 311 KIR 313
           +++
Sbjct: 406 EMQ 408



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 100/180 (55%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CK+   D AL +++ + + G+ P+L+TYN LI GLC+ G 
Sbjct: 232 MLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGD 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ AR ++ E+   G  P+ ITYTT++    +    +   E+   M  +    D   Y  
Sbjct: 292 LKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTA 351

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ +  +Y  +IN +CK+G ++ A  LL EM++ G
Sbjct: 352 LISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDG 411



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 140/300 (46%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  FR  +KH F     T   +++ L K    +      KE+ 
Sbjct: 69  FSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T+I  ++++G L 
Sbjct: 129 ECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +       M   GV  D+ +   LIN  CKE K++ A  L +EM  +G   +  T T LI
Sbjct: 189 KGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK+G +  A    + M + G+  +L  YN ++  L + G +  A ++   M +K   
Sbjct: 249 DGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +L    ++  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKM 368



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+     +A +M R +   G  PE  TY ++I G CK G ++TA  +LKE
Sbjct: 347 VAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GH P  +T
Sbjct: 407 MQRDGHVPCVVT 418



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK    + A  + + + +     + V Y  LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAE 366

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
            +L+E+   G  P   TYT I+    +    K   ++L  M+R G+
Sbjct: 367 KMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGH 412


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 125/250 (50%), Gaps = 1/250 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ ++G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D  ++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 MEVKDSFTYS 255
           M+ +D +  S
Sbjct: 407 MQ-RDGYVPS 415



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    ++A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   ++   M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +I+ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T++  ++K+G L 
Sbjct: 129 EYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K+E A  L DEM   G   +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 125/250 (50%), Gaps = 4/250 (1%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           ++G+   L  +NIL+    K G +R A+ +   +   G  P+ +++ T+M    +     
Sbjct: 129 EYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
            G  + +AM+  G   D + Y  +I    K  ++++A +  ++M+ +G+  + V++ TLI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLI 248

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           + +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+   + M+  G  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
            +   Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 274 LLSCLKSGVR 283
           L   L  G++
Sbjct: 369 LREMLSVGLK 378



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYVPSVVT 418


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 144/303 (47%), Gaps = 5/303 (1%)

Query: 1   MICGDLTPC-TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           M+C    PC T  FN ++ G C+      A+ +F  ++K G VP+  +Y+IL+ GLCK G
Sbjct: 271 MLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQG 330

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            + T   +L E+  +G AP  ++Y++++    R  K +L  E+   ++ +G+  D   Y 
Sbjct: 331 DVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYS 390

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++    +   ++   D    MV      D  +Y +LI  +C+   L  A  + + M   
Sbjct: 391 IILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDS 450

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   +  T TIL+DG  K   I  A L L  + + G   NL  Y  I++ L K  K DH 
Sbjct: 451 GVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHV 510

Query: 240 INVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F  M     V D+  YS ++ +  KA +LP A +L    L  G +       ++++G
Sbjct: 511 WGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLING 570

Query: 296 LRH 298
           L H
Sbjct: 571 LCH 573



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 121/278 (43%), Gaps = 18/278 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T  I+++G  K R  D A      +++ G VP L  Y ++I GLCK  +
Sbjct: 447 MLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNK 506

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 I  ++   G+ P+ + Y+ I+    +  K      +   M  +G   + F Y +
Sbjct: 507 SDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTS 566

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I       RL E     + M+ +G+  D + Y +LI  YCK   ++AA  +   M K G
Sbjct: 567 LINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLG 626

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + +T LI G  K   + GA+  +E M   G   ++  Y  ++    K G      
Sbjct: 627 LSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGD----- 681

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
                 E K + TY+SM+    +A   P A    LSC+
Sbjct: 682 ------ERKANMTYNSML----QAGITPDAK---LSCI 706



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 144/332 (43%), Gaps = 43/332 (12%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++AL  +   +K G   EL   N L+K L +  ++  AR +  ++  SG +PN  +Y+ +
Sbjct: 158 EDALLTYTEAKKVGV--ELQLCNFLLKCLVERNQIIYARSLFDDMKSSGPSPNVYSYSVL 215

Query: 87  MKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           M       +  L    E+LS M+ KG   +   Y T +    +  ++  A ++++ +   
Sbjct: 216 MSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQR 275

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G   +   +N +I  +C+EG+++ A  + D M+K G   D ++++IL+DGLCK G++   
Sbjct: 276 GNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTG 335

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----------------- 247
              L  M + G    L +Y+ ++  L + GK++ A  +F  +E                 
Sbjct: 336 YDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNG 395

Query: 248 ----------------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
                                 V D++ Y+S+++  C+ + L  A  +    L SGV   
Sbjct: 396 CCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPN 455

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
                 +VDG        EA     K+R   I
Sbjct: 456 VVTCTILVDGFGKERMIDEAFLFLHKVRQFGI 487



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 125/273 (45%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   +++ +L+GLC+    + A  +FR L++ GF  + + Y+I++ G C+   +    
Sbjct: 347 IAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVC 406

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+A  YT+++    R+R     L +   M   G + +      ++  F
Sbjct: 407 DLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGF 466

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   + EA  ++ ++   G+  ++  Y  +IN  CK  K +  + +  +M K+G+  D 
Sbjct: 467 GKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDT 526

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             ++I+ID   KA  +  A      M   G   N+  Y  +++ L  D ++   + +F+ 
Sbjct: 527 VVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKH 586

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M       D   Y+S++   CK   + +A ++ 
Sbjct: 587 MIWEGLTPDRILYTSLIVCYCKRSNMKAALEIF 619



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 84/191 (43%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P T  ++I+++   K      A R+F  +   G  P + TY  LI GLC   R
Sbjct: 517 MIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDR 576

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     + K +   G  P+ I YT+++ C  +    K  LEI   M + G + D F Y  
Sbjct: 577 LPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTC 636

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+  +  A   ME+M   G+   +V+Y  LI  Y K G    A +  + M + G
Sbjct: 637 LIGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANMTYNSMLQAG 696

Query: 181 FECDKYTHTIL 191
              D     IL
Sbjct: 697 ITPDAKLSCIL 707


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 125/250 (50%), Gaps = 1/250 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A      M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 MEVKDSFTYS 255
           M+ +D +  S
Sbjct: 407 MQ-RDGYVPS 415



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 115/216 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 123/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G++  A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A+   + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 139/309 (44%), Gaps = 4/309 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G  T     F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    + 
Sbjct: 60  GTQTSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKL 119

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
                +E  + G+  +   +  +M    +  + +L   +  A+ + G       + T++ 
Sbjct: 120 VWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMN 179

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            ++K+G L E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM   G   
Sbjct: 180 GYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP 239

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T T LIDG CK G +  A    + M       +L  YN ++  L K G +  A ++ 
Sbjct: 240 NGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M +K    D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   
Sbjct: 300 DEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQE 359

Query: 300 GCRREAKKI 308
           G   +A+K+
Sbjct: 360 GRSVDAEKM 368



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYVPSVVT 418


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 139/294 (47%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +LNG CK      AL +F  L++ G  P ++TYNILI G C+ G L  AR
Sbjct: 368 LLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEAR 427

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ + G  P+  TYT +MK         +  E    M  KG   D F Y T I A 
Sbjct: 428 RLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAE 487

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           + +G + ++    E ++ +G+  D V+YN LI+  CK G L+ A  L+ +M   G + D 
Sbjct: 488 ITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDC 547

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI   C+ G ++ AR     M   G   +   Y  I+    + G +  A   F  
Sbjct: 548 ITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRK 607

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M       +  TY+ ++H LC+  R   A +     L+ G+   K     ++DG
Sbjct: 608 MLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 10/232 (4%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTTIMKCCFRNRKYK 97
           G  P +VTYN L+    K GR      +LKE+   G +  PN +TY  ++    R + Y 
Sbjct: 226 GIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLAR-KGYL 284

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
                L    R       F Y  +I   +  G +K+  D   +M  +G+   +V+YN +I
Sbjct: 285 EEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMI 344

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +   + G++EAA     EM   G   D  T+  L++G CKAGN K A L    + + G  
Sbjct: 345 HGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLA 404

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV---HNLC 262
             +  YN ++D   + G ++ A  + E M     + D +TY+ ++   HN+C
Sbjct: 405 PTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVC 456



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 39/301 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++ GL    +      +   ++  G +P +VTYN +I GL ++G++  A+    E+
Sbjct: 304 TYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEM 363

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ ITY +++                             GYC       K G  
Sbjct: 364 RAMGLLPDVITYNSLLN----------------------------GYC-------KAGNQ 388

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           KEA      +   G+   +++YN LI+ YC+ G LE A  L +EM +QG   D YT+TIL
Sbjct: 389 KEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTIL 448

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           + G     ++   R   + M   G   +  AYN  +      G I  +  + E + ++  
Sbjct: 449 MKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGI 508

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+ TY+ ++  LCK   L  A +L++  + +G++        ++      G  REA+K
Sbjct: 509 SSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARK 568

Query: 308 I 308
            
Sbjct: 569 F 569



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 42/225 (18%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC----- 183
            R  + +    +M+  G++  IV+YNTL++ + KEG+ +   +LL EME +G  C     
Sbjct: 210 ARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDV 269

Query: 184 -------------------------------DKYTHTILIDGLCKAGNIKGA-RLHLEYM 211
                                            +T+  LI GL   G +K    L LE  
Sbjct: 270 TYNVVIAGLARKGYLEEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEME 329

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
           N+ G    +  YN ++  L + G+I+ A   F  M     + D  TY+S+++  CKA   
Sbjct: 330 NE-GIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQ 388

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             A  L     ++G+         ++DG    G   EA++++ ++
Sbjct: 389 KEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEM 433



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+ ++++  C+     +A   FR + + G  P  +TYN+LI  LC+ GR
Sbjct: 573 MISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGR 632

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM 87
            + A     E+ + G  PN  TYT ++
Sbjct: 633 TQLAYRHFYEMLERGLVPNKYTYTLLI 659



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+  +++  C+  +   A + F  +   G  P  VTY ++I   C+ G 
Sbjct: 538 MISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGN 597

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A    +++ + G  PN ITY  ++    R  + +L       M  +G   + + Y  
Sbjct: 598 LYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTL 657

Query: 121 VI 122
           +I
Sbjct: 658 LI 659


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 150/320 (46%), Gaps = 20/320 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P T+T++ ++  LC     DNA  +F  ++ +  VP++ TY ILI   CK G 
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGL 530

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ AR    E+   G APN +TYT ++    + RK     E+   M  +G   +   Y  
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 121 VIAAFVKIGRLKEATDYMEQM--------------VTDGVQLD--IVSYNTLINLYCKEG 164
           +I    K G++++A     +M              + DG   D  I +Y  L++  CK  
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K++ A  LLD M  +G E +   +  LIDG CK G +  A++    M++ G+  N+  Y+
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++DRL KD ++D A+ V   M       +   Y+ M+  LCK  +   A +L+    + 
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 281 GVRILKSAQKAVVDGLRHSG 300
           G         A++DG   +G
Sbjct: 771 GCHPNVVTYTAMIDGFGKAG 790



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 131/268 (48%), Gaps = 2/268 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK      A  +   +   G  P  + Y+ LI G CK G+L  A+ +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ + G+ PN  TY++++   F++++  L L++LS M       +   Y  +I    K
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+  EA   M  M   G   ++V+Y  +I+ + K GK++    L+ +M  +G   +  T
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI--NVFES 245
           + +LI+  C AG +  A   L+ M +  +  ++  Y  +++   ++  I   +   + E+
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKL 273
           + V     Y  ++ + CKA RL  A +L
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALEL 901



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 159/406 (39%), Gaps = 96/406 (23%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG------ 54
           MI     P    FN +++  C++     A ++ + +   G  P  V YNILI G      
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419

Query: 55  -----------------------------------LCKAGRLRTARWILKELGDSGHAPN 79
                                              LC AG+   A  I++E+   G  P+
Sbjct: 420 LPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPD 479

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
             TY+ ++       K      +   MK      D F Y  +I +F K+G L++A  + +
Sbjct: 480 TSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFD 539

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG------------------- 180
           +MV DG   ++V+Y  LI+ Y K  K+ +A  L + M  +G                   
Sbjct: 540 EMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSG 599

Query: 181 ------------------------FECDK--------YTHTILIDGLCKAGNIKGARLHL 208
                                   F+ D         +T+  L+DGLCKA  +K AR  L
Sbjct: 600 QIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL 659

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           + M+  G + N   Y+ ++D   K GK+D A  VF  M  +    + +TYSS++  L K 
Sbjct: 660 DVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKD 719

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           KRL  A K+L   L++           ++DGL   G   EA ++ S
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 135/349 (38%), Gaps = 83/349 (23%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C+N   + AL     L+  G+ P  +TYN L++   +A RL TA  + +E+ 
Sbjct: 200 LNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMS 259

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           DSG   +  T    +    +  +++   E L+ ++++ +  D   Y  +I+   +    +
Sbjct: 260 DSGFNMDGYTLGCFVHLLCKAGRWR---EALALIEKEEFKLDTVIYTQMISGLCEASLFE 316

Query: 133 EATDYMEQMVTDGVQLDIVSY-----------------------------------NTLI 157
           EA D++ +M +     ++V+Y                                   N+LI
Sbjct: 317 EAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG----------------------- 194
           + YC+ G    AY LL +M   G +     + ILI G                       
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436

Query: 195 ------------------LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
                             LC AG  + A   +  M   GF  +   Y+ ++  L    K+
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           D+A  +FE M+    V D FTY+ ++ + CK   L  A K     ++ G
Sbjct: 497 DNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +  M++GLCK   TD A R+   +++ G  P +VTY  +I G  KAG+
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +++++G  G APN +TY  ++  C          ++L  MK+  +     GY  
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 121 VIAAF-----VKIGRLKEATDYMEQMVTDGVQLDIV-SYNTLINLYCKEGKLEAAYLLLD 174
           VI  F     + +G L E        + + V + I+ +Y  LI+ +CK G+LE A  L  
Sbjct: 852 VIEGFNREFIISLGLLDE--------IAENVAVPIIPAYRILIDSFCKAGRLELALELHK 903

Query: 175 EMEK--QGFECDKYTHTILIDGLCKAGNIKGA 204
           EM         DK  ++ LI+ L  A  +  A
Sbjct: 904 EMSSCTSYSAADKDLYSSLIESLSLASKVDKA 935



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 7/232 (3%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            Y+ L++ L   G  R     L+E+ D            +++ C RN  + + LE L  +
Sbjct: 164 VYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRL 223

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           K  GY      Y  ++  F++  RL  A     +M   G  +D  +    ++L CK G+ 
Sbjct: 224 KDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRW 283

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
             A  L+   EK+ F+ D   +T +I GLC+A   + A   L  M       N+  Y  +
Sbjct: 284 REALALI---EKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRIL 340

Query: 227 VDRLGKDGKIDHAINVFESMEVKDSFT----YSSMVHNLCKAKRLPSASKLL 274
           +    +  ++     +   M  +  +     ++S++H  C++     A KLL
Sbjct: 341 LCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 159/331 (48%), Gaps = 26/331 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  +TFNI++  LCK      A+ +   +  +G VP+  T+  L++G  + G 
Sbjct: 184 MVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGN 243

Query: 61  LRTARWILKELGDS-------------------GHAPNAITYTTIMKCCFRNRKYKLGLE 101
           +  A  + +++ D+                   G    A+++   M       K+ + +E
Sbjct: 244 MDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMS---NEGKHTMAIE 300

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           + + MK KG   D F Y  +I +    G+L+EA   + +M   G   ++++YNTLI+ +C
Sbjct: 301 LYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFC 360

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K  K+E A  + D+ME QG   +  T+  LIDGLCK+  ++ A   ++ M   G   +  
Sbjct: 361 KNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKF 420

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            YN ++    ++G I  A ++ ++M       D  TY +++  LCKA R+  AS+LL S 
Sbjct: 421 TYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSI 480

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              G+ +   A   V+  L      +EA ++
Sbjct: 481 QLKGMVLTPHAYNPVIQALFKRKRTKEAMRL 511



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 129/240 (53%), Gaps = 4/240 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+ ++  ++  G  P+  TYN+LI  LC  G+L+ A  +L+E+  SG A N ITY T++ 
Sbjct: 298 AIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLID 357

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              +N+K +   EI   M+ +G + +   Y T+I    K  R++EA   M+QM+ +G++ 
Sbjct: 358 GFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKP 417

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D  +YN+++  +C+EG ++ A  ++  M   G E D  T+  LI GLCKAG ++ A   L
Sbjct: 418 DKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLL 477

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             +   G      AYN ++  L K  +   A+ +F  ME K    D+FTY  +   L  +
Sbjct: 478 RSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNS 537



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 124/260 (47%), Gaps = 5/260 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N++++ LC       AL + R ++  G    ++TYN LI G CK  ++  A  I
Sbjct: 312 PDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEI 371

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G + N++TY T++    ++R+ +   +++  M  +G   D F Y +++  F +
Sbjct: 372 FDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCR 431

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +++A D ++ M ++G + DIV+Y TLI   CK G++E A  LL  ++ +G     + 
Sbjct: 432 EGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHA 491

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-----KIDHAINV 242
           +  +I  L K    K A      M + G   +   Y  +   L   G      +D  I +
Sbjct: 492 YNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEM 551

Query: 243 FESMEVKDSFTYSSMVHNLC 262
            E   + +  ++  +   LC
Sbjct: 552 IEKGFLPEFSSFYMLAEGLC 571



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 134/309 (43%), Gaps = 58/309 (18%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N +LN L           +   +   G  P++ T+NILIK LCKA ++R A  +++
Sbjct: 158 TLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVME 217

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G  P+  T+T                                   T++  F++ G
Sbjct: 218 EMSSYGLVPDEKTFT-----------------------------------TLMQGFIEEG 242

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +  A    EQM+  G  +  V+ N L++ +CKEG++E A   +DEM  +G       HT
Sbjct: 243 NMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEG------KHT 296

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           + I+            L+ E  NK G   +   YN ++D L   GK+  A+ +   ME+ 
Sbjct: 297 MAIE------------LYNEMKNK-GCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEIS 343

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              ++  TY++++   CK K++  A ++       G+         ++DGL  S   +EA
Sbjct: 344 GCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEA 403

Query: 306 KKIQSKIRM 314
            ++  ++ M
Sbjct: 404 AQLMDQMIM 412



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 5/206 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N ML   C+      A  + + +  +G  P++VTY  LI GLCKAGR
Sbjct: 410 MIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGR 469

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ +   G       Y  +++  F+ ++ K  + +   M+ KG T D F Y  
Sbjct: 470 VEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKI 529

Query: 121 VIAAFVKI-GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD-EMEK 178
           V        G + EA D++ +M+  G   +  S+  L    C     +    L+D  MEK
Sbjct: 530 VFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLVDLVMEK 589

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGA 204
             F  ++    ++I G  K    + A
Sbjct: 590 ANFSQNE---VVMIRGFLKIRKFQDA 612



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 140/339 (41%), Gaps = 27/339 (7%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGR 60
           +  + TP       +L+ L +      ALR+     K   F P    Y  +++ L K G 
Sbjct: 48  LSSNFTPAQ-----LLDTLRRQNDETAALRLLSWASKQPNFRPNSSIYEEILRKLGKVGS 102

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYC 119
             + + IL+E+       +       +    +   Y+  L I+  M+ + G   D   Y 
Sbjct: 103 FNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYN 162

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++   V   +LK   +    MV+ G++ D+ ++N LI   CK  ++  A L+++EM   
Sbjct: 163 FLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSY 222

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG----------------FDSNLEAY 223
           G   D+ T T L+ G  + GN+ GA    E M   G                 +  +E  
Sbjct: 223 GLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEA 282

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
              +D +  +GK   AI ++  M+ K    D FTY+ ++ +LC   +L  A  LL     
Sbjct: 283 LSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEI 342

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           SG          ++DG   +    EA++I  ++ +  +S
Sbjct: 343 SGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLS 381


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 150/309 (48%), Gaps = 4/309 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G + P    +N +++ LC  +  ++AL +F  +   G  P +VTYN LI+ LC  GR   
Sbjct: 250 GKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 309

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++ +    PN +T++ ++    +  K     ++   M ++    D F Y ++I 
Sbjct: 310 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA    E M++     ++V+YNTLI  +CK  +++    L  EM ++G   
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG 429

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+T LI G  +A     A++  + M   G   ++  Y+ ++D L  +GK++ A+ VF
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVF 489

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++      D +TY+ M+  +CKA ++     L  S    GV+        ++ G    
Sbjct: 490 EYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549

Query: 300 GCRREAKKI 308
           G + EA  +
Sbjct: 550 GLKEEADAL 558



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 144/297 (48%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + TFN +++GL ++     A+ +   +   G  P+LVTY I++ GLCK G +  A  +
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSL 243

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++      P  + Y TI+      +     L + + M  KG   +   Y ++I     
Sbjct: 244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V+++ LI+ + KEGKL  A  L DEM K+  + D +T
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 363

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI+G C    +  A+   E M       N+  YN ++    K  ++D  + +F  M 
Sbjct: 364 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMS 423

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               V ++ TY++++H   +A+   +A  +    +  GV         ++DGL ++G
Sbjct: 424 QRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 133/262 (50%), Gaps = 4/262 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ +++   K      A +++  + K    P++ TY+ LI G C   R
Sbjct: 317 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 376

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      PN +TY T++K   + ++   G+E+   M ++G   +   Y T
Sbjct: 377 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F +      A    +QMV+DGV  DI++Y+ L++  C  GK+E A ++ + +++  
Sbjct: 437 LIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK 496

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D YT+ I+I+G+CKAG ++        ++  G   N+  Y  ++    + G  + A 
Sbjct: 497 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEAD 556

Query: 241 NVFESME----VKDSFTYSSMV 258
            +F  M+    + DS TY++++
Sbjct: 557 ALFREMKEEGPLPDSGTYNTLI 578



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 143/290 (49%), Gaps = 4/290 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F  + K    P +V ++ L+  + K  +      + +++ + G + N  TY+ +
Sbjct: 63  DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  +  L L +L+ M + GY  D     +++  F    R+ +A   + QMV  G 
Sbjct: 123 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q D  ++NTLI+   +  +   A  L+D M  +G + D  T+ I+++GLCK G+I  A  
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L+ M +   +  +  YN I+D L     ++ A+N+F  M+ K    +  TY+S++  LC
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 302

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
              R   AS+LL   ++  +        A++D     G   EA+K+  ++
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 352



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 130/267 (48%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++I++N  C+      AL +   + K G+ P++VT N L+ G C   R+  A  ++ ++
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P++ T+ T++   FR+ +    + ++  M  KG   D   Y  V+    K G +
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A   +++M    ++  +V YNT+I+  C    +  A  L  EM+ +G   +  T+  L
Sbjct: 238 DLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + N+  ++ ++D   K+GK+  A  +++ M  +  
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D FTYSS+++  C   RL  A  + 
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMF 384



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 125/279 (44%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ +L+ + K    D  + +   +Q  G    L TY+ILI   C+  +L  A  +
Sbjct: 79  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+ +T  +++       +    + ++  M   GY  D F + T+I    +
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R  EA   +++MV  G Q D+V+Y  ++N  CK G ++ A  LL +ME+   E     
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +ID LC   N+  A      M+  G   N+  YN ++  L   G+   A  +   M 
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +    +  T+S+++    K  +L  A KL    +K  +
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 4/192 (2%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L +A +    MV       IV ++ L++   K  K +    L ++M+  G   + YT++
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
           ILI+  C+   +  A   L  M K+G++ ++   N +++      +I  A+++   M   
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               DSFT+++++H L +  R   A  L+   +  G +        VV+GL   G    A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 306 KKIQSKIRMAKI 317
             +  K+   KI
Sbjct: 241 LSLLKKMEQGKI 252


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 160/382 (41%), Gaps = 74/382 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T NIM++ LCK +  D+A  +F GL      P+ VTY  LI+GL + GR+  A 
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAY 499

Query: 66  WILKELGDSGHAPNAITYT-----------------------------------TIMKCC 90
            + +++ D+   PNA+ YT                                   T M C 
Sbjct: 500 KLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCV 559

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           F+  + + G  +   +K  G+  D   Y  +I   VK G   EA +    M   G  LD 
Sbjct: 560 FKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDT 619

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT----------------------- 187
            +YNT+I+ +CK GK+  AY LL+EM+ +G E    T                       
Sbjct: 620 RAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 679

Query: 188 ------------HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
                       ++ LIDG  K G I  A L +E + + G   N+  +NC++D L K  +
Sbjct: 680 AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 739

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           I  A+  F+SM+      +  TYS ++H LCK ++   A        K G +        
Sbjct: 740 ISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTT 799

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           ++ GL  +G   EA  +  K +
Sbjct: 800 MISGLAKAGNIVEADTLFEKFK 821



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 156/353 (44%), Gaps = 40/353 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P     N  ++ + K    +    +F+ ++  GF+P+  +Y ILI GL KAG    A  
Sbjct: 546 SPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYE 605

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   + + G   +   Y T++    ++ K     ++L  MK KG+      Y +VI    
Sbjct: 606 LFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLA 665

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KI RL EA    E+  + G++L++V Y++LI+ + K G+++ AYL+++E+ ++G   + Y
Sbjct: 666 KIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVY 725

Query: 187 -----------------------------------THTILIDGLCKAGNIKGARLHLEYM 211
                                              T++ILI GLCK      A +  + M
Sbjct: 726 TWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEM 785

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            K GF  N+  Y  ++  L K G I  A  +FE  +    V DS  Y++++  L  A R 
Sbjct: 786 QKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRA 845

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR-MAKISH 319
             A +L       G  I       ++D L  + C  +A  + + +R  AK  H
Sbjct: 846 SDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQH 898



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 149/344 (43%), Gaps = 40/344 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L+ L +    D AL+ F  ++K   +P L TYNI+I  LCKAG+L TA  +
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA-IPNLSTYNIMIDMLCKAGKLETALVV 431

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + D+G  PN IT   ++    + ++      I   +  K    D   YC++I    +
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 128 IGRLKEATDYMEQMV------------------------TDGVQL-----------DIVS 152
            GR+ EA    EQM+                         DG ++           D++ 
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
            NT ++   K G++E    L  E++  GF  D  ++TILI GL KAG    A      M 
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMK 611

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLP 268
           + G   +  AYN ++D   K GK++ A  + E M+ K       TY S++  L K  RL 
Sbjct: 612 EQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLD 671

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            A  L       G+ +      +++DG    G   EA  I  ++
Sbjct: 672 EAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 715



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 5/285 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P    +N+ ++   K    D A + F  ++ +G V + VTY  +I  LCKA R
Sbjct: 261 MKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADR 320

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + + +  +   P A  Y T++       K++    +L   +RKG       Y  
Sbjct: 321 LNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNC 380

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++   + G++ EA    E+M  D +  ++ +YN +I++ CK GKLE A ++ D M+  G
Sbjct: 381 ILSCLGRKGQVDEALKKFEEMKKDAIP-NLSTYNIMIDMLCKAGKLETALVVRDAMKDAG 439

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T  I++D LCKA  +  A    E ++      +   Y  +++ LG+ G++D A 
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAY 499

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            ++E M    ++ ++  Y+S++ N  K  R     K+    L+ G
Sbjct: 500 KLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLG 544



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 140/303 (46%), Gaps = 19/303 (6%)

Query: 22  KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81
           K+R    A    + ++K  F P    Y  LI  L  +        + +++ + G+A N  
Sbjct: 177 KSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVH 236

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
            +TT+++   R  +    L +L  MK      D   Y   I  F K G++  A  +  +M
Sbjct: 237 LFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEM 296

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
             +G+ LD V+Y ++I + CK  +L  A  L + M++       Y +  +I G   AG  
Sbjct: 297 KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKF 356

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSMV 258
           + A   LE   + G   ++ +YNCI+  LG+ G++D A+  FE M+   + +  TY+ M+
Sbjct: 357 EDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMI 416

Query: 259 HNLCKAKRLPSA---------SKLLLSCLKSGVRI--LKSAQK-----AVVDGLRHSGCR 302
             LCKA +L +A         + L  + +   + +  L  AQ+     ++ +GL H  CR
Sbjct: 417 DMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCR 476

Query: 303 REA 305
            +A
Sbjct: 477 PDA 479



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 80/203 (39%), Gaps = 39/203 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   T+N +L+ L K      AL  F+ ++     P  +TY+ILI GLCK  +   A 
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+   G  PN  TYTT+                                   I+  
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTM-----------------------------------ISGL 804

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + EA    E+    G   D   YN +I       +   AY L +E   +G  C  
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKG--CSI 862

Query: 186 YTHT--ILIDGLCKAGNIKGARL 206
           YT T  +L+D L KA  I+ A +
Sbjct: 863 YTKTCVVLLDSLHKAECIEQAAI 885


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 12/315 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N + +  C+    D A ++   ++K G  P ++T N ++ GLC+ GR+  A   
Sbjct: 238 PNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDF 297

Query: 68  LKE-----LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +E     L   G   NA+TY+T++          L +E+   M  +GY  D   Y T+I
Sbjct: 298 FREKRTTWLEARG---NAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMI 354

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +   + GRL +A +    M   G +LD  +YN LI  +C++ +L  A+ L +EM+  G +
Sbjct: 355 SGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQ 414

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D YT+  L+  LCKAG+       L  M   G   ++  +  +V    K GK D A+ +
Sbjct: 415 PDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKI 474

Query: 243 FESM-EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F SM E +   ++  Y++++  LCK++ +  A KL     ++ V    +   A++ GL+ 
Sbjct: 475 FRSMGEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQD 534

Query: 299 SGCRREAKKIQSKIR 313
                +A ++  +++
Sbjct: 535 KNMPEKAFELMDQMK 549



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 152/320 (47%), Gaps = 10/320 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTAR 65
           P   T+ I+LN LCK     +AL++   +   G     ++V  N ++ GLCK GRL+ A 
Sbjct: 164 PDIVTYGILLNRLCKAGLVGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAI 223

Query: 66  WILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             + E     H  APN +TY  +   C R     +  +I+  M+++G T +     T++ 
Sbjct: 224 VFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVG 283

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
              ++GR+  A D+  +  T  ++   + V+Y+TL++ +     +  A  L  EM  QG+
Sbjct: 284 GLCRVGRVGAALDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGY 343

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D   +  +I GL +AG +  A      M K GF  + +AYN ++    +  ++  A  
Sbjct: 344 PPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQ 403

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +FE M+      D +TY++++  LCKA    +  +LL + +  G +        +V G  
Sbjct: 404 LFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYC 463

Query: 298 HSGCRREAKKIQSKIRMAKI 317
            +G   EA KI   +  A+I
Sbjct: 464 KAGKTDEALKIFRSMGEARI 483



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 97/203 (47%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI++ G C+ +    A ++F  ++  G  P++ TYN L+  LCKAG       +L  + 
Sbjct: 385 YNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMI 444

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G  P+ +T+ T++    +  K    L+I  +M       +   Y T+I    K   + 
Sbjct: 445 DDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFLCKSREVD 504

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A    ++M  + V  ++ +YN L+     +   E A+ L+D+M+++    D  T  +L+
Sbjct: 505 VAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEERCTPDYVTMDVLM 564

Query: 193 DGLCKAGNIKGARLHLEYMNKIG 215
           + L + G  +  +  +E  ++ G
Sbjct: 565 EWLPEIGETERLKCFMEQRDEKG 587



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 81/175 (46%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L+ LCK         +   +   G  P +VT+  L+ G CKAG+   A 
Sbjct: 413 LQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEAL 472

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + +G++   PN + Y T++    ++R+  + +++   M+      +   Y  ++   
Sbjct: 473 KIFRSMGEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGL 532

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                 ++A + M+QM  +    D V+ + L+    + G+ E     +++ +++G
Sbjct: 533 QDKNMPEKAFELMDQMKEERCTPDYVTMDVLMEWLPEIGETERLKCFMEQRDEKG 587



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TF  +++G CK   TD AL++FR + +    P  V YN LI  LCK+  
Sbjct: 443 MIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFLCKSRE 502

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ ++    N  TY  ++K        +   E++  MK +  T D      
Sbjct: 503 VDVAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEERCTPDYVTMDV 562

Query: 121 VIAAFVKIGRLKEATDYMEQ 140
           ++    +IG  +    +MEQ
Sbjct: 563 LMEWLPEIGETERLKCFMEQ 582


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 139/279 (49%), Gaps = 2/279 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NG  +      A +M + + KHG  P  V+Y   +KGLC+ G    AR +
Sbjct: 326 PDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREM 385

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +K   +    PNAITY+ +M    R  K     +++  M  KG+         ++ +  +
Sbjct: 386 MKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCR 445

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IGR+ EA  +ME+ +  G  ++ V++ T+I+ +C++  +EAA  LLD+M       D  T
Sbjct: 446 IGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVT 505

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +ID L K G I+ A      M K G D     Y  ++ R G+ G+++  +N+ + M 
Sbjct: 506 YTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKML 565

Query: 248 VKDS--FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +      ++ ++  LC    L +A KLL   L++  RI
Sbjct: 566 TRQECRTAFNQVIEKLCTFGNLEAADKLLGKVLRTASRI 604



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 137/280 (48%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P     N  ++ L      + ALR    +Q  G +P +VTYN LIKG C   R+  A 
Sbjct: 149 IEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAM 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+   G +P+ ++Y T+M    +NR+ +  ++++  M+      D   Y T+I   
Sbjct: 209 ELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHML 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K     EA  ++ +    G Q+D V Y+ +++ YCKEG+++ A  +++EM  +G   D 
Sbjct: 269 CKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDV 328

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T +I+G  +AG +  AR  L+ M K G   N  +Y   +  L + G    A  + ++
Sbjct: 329 VTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKA 388

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            E      ++ TYS ++H   +  +L  A  ++   +  G
Sbjct: 389 SEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKG 428



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 130/277 (46%), Gaps = 4/277 (1%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           NA+++   +QK G  P L+  N  I  L  A  L  A   L+ +   G  PN +TY  ++
Sbjct: 136 NAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLI 195

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K      + +  +E++S M  KG + D   Y TV+    K  R++E  D +E+M    + 
Sbjct: 196 KGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLL 255

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D V+YNTLI++ CK    + A   L E +K+GF+ DK  ++ ++D  CK G +  A+  
Sbjct: 256 ADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEI 315

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           +  M   G   ++  Y  I++   + G++  A  + + M       ++ +Y++ +  LC+
Sbjct: 316 VNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQ 375

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                 A +++ +  +            V+ G R  G
Sbjct: 376 KGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREG 412



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 132/303 (43%), Gaps = 39/303 (12%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGF----------------------------- 41
            T+N +++ LCK+++ D AL+  R  QK GF                             
Sbjct: 259 VTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNE 318

Query: 42  ------VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
                 +P++VTY  +I G  +AG +  AR +L+++   G  PN ++YT  +K   +   
Sbjct: 319 MFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGN 378

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                E++ A + + +T +   Y  V+  F + G+L +A D + +M+  G     V  N 
Sbjct: 379 SSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINL 438

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L+   C+ G+++ A   ++E    G   +    T +I   C+  +I+ A   L+ M    
Sbjct: 439 LLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSN 498

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              +   Y  I+D LGK G+I+ A  +   M  K       TY +++H   +  R+    
Sbjct: 499 KHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLL 558

Query: 272 KLL 274
            LL
Sbjct: 559 NLL 561



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T++++++G  +     +A  + R +   GF P  V  N+L++ LC+ GR+  A+ 
Sbjct: 395 TPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKK 454

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            ++E  + G A NA+ +TT++    +    +  L +L  M       D   Y T+I A  
Sbjct: 455 FMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALG 514

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR++EAT+   +M+  G+    V+Y T+I+ Y + G++E    LLD+M  +  EC + 
Sbjct: 515 KKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQ-EC-RT 572

Query: 187 THTILIDGLCKAGNIKGA 204
               +I+ LC  GN++ A
Sbjct: 573 AFNQVIEKLCTFGNLEAA 590



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            + +ML+ L K +    A R+ R + + G       +  ++    +AG+LR A  +L  +
Sbjct: 85  VYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMM 144

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  PN +   T +         +  L  L  M+  G   +   Y  +I  +  + R+
Sbjct: 145 QKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRV 204

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A + + +M   G   D VSY T++   CK  ++     ++++ME      D+ T+  L
Sbjct: 205 EDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTL 264

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I  LCK  +   A   L    K GF  +   Y+ IVD   K+G++D A  +   M     
Sbjct: 265 IHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGC 324

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + D  TY+++++   +A  +  A K+L    K G +    +  A + GL   G   EA++
Sbjct: 325 IPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEARE 384

Query: 308 I 308
           +
Sbjct: 385 M 385



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 96/199 (48%), Gaps = 4/199 (2%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           +C V+ ++ + G+L+ A   +  M   G++ +++  NT I++      LE A   L+ M+
Sbjct: 121 FCCVMVSYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQ 180

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
             G   +  T+  LI G C    ++ A   +  M   G   +  +Y  ++  L K+ +I 
Sbjct: 181 LLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIR 240

Query: 238 HAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
             ++V E ME    + D  TY++++H LCK +    A + L    K G ++ K    A+V
Sbjct: 241 EVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIV 300

Query: 294 DGLRHSGCRREAKKIQSKI 312
           D     G   +AK+I +++
Sbjct: 301 DSYCKEGRMDQAKEIVNEM 319



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 2/243 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P     N++L  LC+    D A +        G     V +  +I   C+   
Sbjct: 424 MIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDD 483

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++  S   P+A+TYTTI+    +  + +   E+   M +KG       Y T
Sbjct: 484 IEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRT 543

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  + +IGR+++  + +++M+T   Q    ++N +I   C  G LEAA  LL ++ +  
Sbjct: 544 VIHRYGQIGRVEDLLNLLDKMLTR--QECRTAFNQVIEKLCTFGNLEAADKLLGKVLRTA 601

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T  +L++   + G    A      M       +L+    +  +L ++GK + A 
Sbjct: 602 SRIDANTCHVLMESYLRKGIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSEEAD 661

Query: 241 NVF 243
           N+F
Sbjct: 662 NLF 664


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       ALR    +   GF    ++Y ILI G+CK G  R A  +
Sbjct: 126 PNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRL 185

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN + Y+ I+    ++       ++ + M  KG + D   Y  +++ F  
Sbjct: 186 LRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCI 245

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L  A D + +MV + +  DI +Y  L++  CKEGK++ A  +L  M K     D   
Sbjct: 246 VGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVV 305

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+DG C    +  A+     M ++G   ++  Y+ +++ L K  ++D A+N+FE + 
Sbjct: 306 YSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIH 365

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D+ TY+S++  LCK+ R+     L    L  G          ++D L  +G   
Sbjct: 366 QKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLD 425

Query: 304 EAKKIQSKIR 313
            A  + +K++
Sbjct: 426 RAIALFNKMK 435



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++++++ LCK+   D A  ++  +   G  P++VTY+IL+ G C  G+L  A  +
Sbjct: 196 PNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDL 255

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+  TYT ++    +  K K    +L+ M +     D   Y T++  +  
Sbjct: 256 LNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCL 315

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +  +  A      M   GV  D+  Y+ +IN  CK  +++ A  L +E+ ++    D  T
Sbjct: 316 VNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVT 375

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LID LCK+G I       + M   G   ++  YN ++D L K+G +D AI +F  M+
Sbjct: 376 YTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMK 435

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    + +T++ ++  LCK  RL +A +     L  G  +       +++GL   G   
Sbjct: 436 DQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLD 495

Query: 304 EAKKIQSKIR 313
           EA  +QS++ 
Sbjct: 496 EALALQSRME 505



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 134/286 (46%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   T+ I+++ LCK      A  +   + K     ++V Y+ L+ G C    
Sbjct: 259 MVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNE 318

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +   +   G  P+   Y+ ++    + ++    L +   + +K    D   Y +
Sbjct: 319 VNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTS 378

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+    D  ++M+  G   D+++YN LI+  CK G L+ A  L ++M+ Q 
Sbjct: 379 LIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQA 438

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + YT TIL+DGLCK G +K A    + +   G+  N+  Y  +++ L K+G +D A+
Sbjct: 439 IRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEAL 498

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME    + D+ T+  M+           A KL+   +  G+
Sbjct: 499 ALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 135/307 (43%), Gaps = 39/307 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP T  FN +L  L   +    A+ +++ ++     P+  T NI+I   C  G++  A  
Sbjct: 55  TPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFS 114

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            + ++   G+ PN IT  T+MK      K K  L     +  +G+   G  Y  +I    
Sbjct: 115 GVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVC 174

Query: 127 KIGRLK-----------------------------------EATDYMEQMVTDGVQLDIV 151
           KIG  +                                   EA D   +MV  G+  D+V
Sbjct: 175 KIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVV 234

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y+ L++ +C  G+L  A  LL+EM  +    D YT+TIL+D LCK G +K A   L  M
Sbjct: 235 TYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVM 294

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            K   + ++  Y+ ++D      ++++A  VF +M       D   YS M++ LCK KR+
Sbjct: 295 VKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRV 354

Query: 268 PSASKLL 274
             A  L 
Sbjct: 355 DEALNLF 361


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 151/313 (48%), Gaps = 5/313 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGLCK    D AL +   ++K     ++V YN +I GLCK   
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKH 265

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++   G  P+  TY  ++ C     ++     +LS M  K    D   +  
Sbjct: 266 MDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNA 325

Query: 121 VIAAFVKIGRLKEATDYMEQMV-TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I AFVK G+L EA    ++MV +     D+V+YNTLI  +CK  ++E    +  EM ++
Sbjct: 326 LIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQR 385

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   +  T+T LI G  +A +   A++  + M   G   ++  YN ++D L  +G ++ A
Sbjct: 386 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETA 445

Query: 240 INVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VFE M+ +D      TY++M+  LCKA ++     L  S    GV+        ++ G
Sbjct: 446 LVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSG 505

Query: 296 LRHSGCRREAKKI 308
               G + EA  +
Sbjct: 506 FCRKGLKEEADAL 518



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 139/283 (49%), Gaps = 5/283 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +      +N +++GLCK ++ D+A  +F  ++  G  P++ TYN LI  LC  GR   
Sbjct: 244 GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSD 303

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVI 122
           A  +L ++ +    P+ + +  ++    +  K     ++   M +  + F D   Y T+I
Sbjct: 304 ASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLI 363

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K  R++E  +   +M   G+  + V+Y TLI+ + +    + A ++  +M   G  
Sbjct: 364 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 423

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+ IL+DGLC  GN++ A +  EYM K     ++  Y  +++ L K GK++   ++
Sbjct: 424 PDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDL 483

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           F S+ +K    +  TY++M+   C+      A  L +   + G
Sbjct: 484 FCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDG 526



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 136/276 (49%), Gaps = 5/276 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++I +N  C+      AL +   + K G+ P +VT N L+ G C   R+  A  ++ ++
Sbjct: 112 TYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 171

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+ +T+TT++   F++ K    + ++  M  KG   D   Y  VI    K G  
Sbjct: 172 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 231

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++ D+V YNT+I+  CK   ++ A+ L ++ME +G + D +T+  L
Sbjct: 232 DLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPL 291

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I  LC  G    A   L  M +   + +L  +N ++D   K+GK+  A  +++ M     
Sbjct: 292 ISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKH 351

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              D   Y++++   CK KR+    ++     + G+
Sbjct: 352 CFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGL 387



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 4/294 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F  + K    P +V ++ L+  + K  +      + +++ + G + N  TY+  
Sbjct: 57  DDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIF 116

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +    R  +  L L IL  M + GY        +++  F    R+ EA   ++QMV  G 
Sbjct: 117 INYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 176

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q D V++ TL++   +  K   A  L++ M  +G + D  T+  +I+GLCK G    A  
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 236

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L  M K   ++++  YN I+D L K   +D A ++F  ME K    D FTY+ ++  LC
Sbjct: 237 LLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLC 296

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
              R   AS+LL   L+  +        A++D     G   EA+K+  ++  +K
Sbjct: 297 NYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSK 350



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 1/233 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N ++ G CK +  +  + +FR + + G V   VTY  LI G  +A     A+ +
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++   G  P+ +TY  ++     N   +  L +   M+++    D   Y T+I A  K
Sbjct: 414 FKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCK 473

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++++  D    +   GV+ ++V+Y T+++ +C++G  E A  L  EM++ G   +  T
Sbjct: 474 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGT 533

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  LI    + G+   +   ++ M   GF  +   +  + + L  DG++D + 
Sbjct: 534 YNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNML-HDGRLDKSF 585



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 4/192 (2%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L +A      MV       IV ++ L++   K  K +    L ++M+  G   + YT++
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
           I I+  C+   +  A   L  M K+G+  ++   N +++      +I  A+ + + M   
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D+ T++++VH L +  +   A  L+   +  G +       AV++GL   G    A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 306 KKIQSKIRMAKI 317
             + +K+   KI
Sbjct: 235 LNLLNKMEKGKI 246



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  M++G C+    + A  +F  +++ G +P   TYN LI+   + G    +  +
Sbjct: 494 PNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAEL 553

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +KE+   G A +A T+  +       R  K  L++LS
Sbjct: 554 IKEMRSCGFAGDASTFGLVTNMLHDGRLDKSFLDMLS 590


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  +G  PN +T+TT++    +     L +E    M R+G++ D   Y T+I   
Sbjct: 227 ELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G   GA   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 146/301 (48%), Gaps = 8/301 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L    K +Y  +    ++ + + G+   L  +NIL+   CK G +R A+ +  E+   G
Sbjct: 107 VLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+ +G+  + V++ TLI+ +CK G ++ A     EM +QGF  D  T+  LI GL
Sbjct: 227 ELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G++K A+  ++ M+  G   +   Y  ++D   K+G ++ A    + M  +    D 
Sbjct: 287 CKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDD 346

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
             Y++++  LC+  +   A K+L   L  G++        +++      C++   K+ SK
Sbjct: 347 VAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEF----CKKGDVKMGSK 402

Query: 312 I 312
           +
Sbjct: 403 L 403



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 112/210 (53%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+++++NGLCK    ++A  +F  +  +G VP  VT+  LI G CK G +  A 
Sbjct: 202 IQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAM 261

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              KE+   G +P+ ITY T++    +    K   +++  M  KG   D   Y T+I   
Sbjct: 262 EAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGS 321

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L+ A  Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G + D 
Sbjct: 322 CKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDN 381

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            T+T++I+  CK G++K     L+ M + G
Sbjct: 382 GTYTMIINEFCKKGDVKMGSKLLKEMQRDG 411



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 53/107 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK    + A +  + + K     + V Y  LI GLC+ G+   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAE 366

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT 112
            +L+E+   G  P+  TYT I+    +    K+G ++L  M+R G+ 
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHV 413



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   +  A +M R +   G  P+  TY ++I   CK G ++    +LKE
Sbjct: 347 VAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GH P  +T
Sbjct: 407 MQRDGHVPCVVT 418


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 144/278 (51%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   ++ P   TFN++++ +CK      A  +F+ + + G  P++VTY+ L+ G      
Sbjct: 296 MTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRME 355

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +   +   G  P+A +Y  ++K   + ++     ++ + M  +G T D   Y T
Sbjct: 356 IVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNT 415

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    ++GRL+EA D  + M ++G   D+ +Y+ L++ +CKEG L  A+ L   M+   
Sbjct: 416 LIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTY 475

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   + ILID +CK GN+K AR     +   G   N++ Y  I++ L K+G +D A+
Sbjct: 476 LKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEAL 535

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             F +ME      D F+Y+ ++    + K    A++L+
Sbjct: 536 EAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLI 573



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 134/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   TFN ++NGLCK      A+  F   +  G  P + TY  +I GLCK G 
Sbjct: 156 MIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGE 215

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K++ ++G  PN +TY  ++    +++     L+I S MK K  + D F Y +
Sbjct: 216 TTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNS 275

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I       R KEA+  + +M +  +  +I ++N L++  CKEGK+  A  +   M + G
Sbjct: 276 LIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMG 335

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D  T++ L+ G      I  AR   + M   G   +  +YN ++    K  +ID A 
Sbjct: 336 VEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAK 395

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +F  M       D+  Y++++H LC+  RL  A  L 
Sbjct: 396 QLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLF 433



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 138/302 (45%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+++ LCK++  + AL +F  ++     P++ TYN LI+GLC   R + A  +
Sbjct: 233 PNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASAL 292

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      PN  T+  ++    +  K      +   M   G   D   Y +++  +  
Sbjct: 293 LNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSL 352

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + EA    + M+T G + D  SYN LI  YCK  +++ A  L +EM  QG   D   
Sbjct: 353 RMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVN 412

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI GLC+ G ++ A+   + M+  G   +L  Y+ ++D   K+G +  A  +F  M+
Sbjct: 413 YNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQ 472

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D   Y+ ++  +CK   L  A KL       G+         +++ L   G   
Sbjct: 473 STYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLD 532

Query: 304 EA 305
           EA
Sbjct: 533 EA 534



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T +I+++     +  D A  +F  + K G  P+ VT+N LI GLCK G+   A 
Sbjct: 126 LSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAV 185

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               +   SG  P   TYTTI+    +  +      +   M+  G   +   Y  +I + 
Sbjct: 186 EFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSL 245

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   + EA D    M    +  DI +YN+LI   C   + + A  LL+EM       + 
Sbjct: 246 CKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNI 305

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T  +L+D +CK G +  A+   + M ++G + ++  Y+ ++       +I  A  +F++
Sbjct: 306 FTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDA 365

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D+F+Y+ ++   CKAKR+  A +L    +  G+         ++ GL   G 
Sbjct: 366 MITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGR 425

Query: 302 RREAKKI 308
            REA+ +
Sbjct: 426 LREAQDL 432



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 65/138 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++++L+G CK  Y   A R+FR +Q     P++  YNILI  +CK G L+ AR +
Sbjct: 443 PDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKL 502

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             EL   G  PN   YTTI+    +       LE    M+  G   D F Y  +I  F++
Sbjct: 503 FSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQ 562

Query: 128 IGRLKEATDYMEQMVTDG 145
                 A   + +M   G
Sbjct: 563 YKDESRAAQLIGEMRDRG 580



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 5/174 (2%)

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLD-EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           I+ +  L++   K G+   A + L  +ME  G   D YT +ILID       +  A    
Sbjct: 94  IIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVF 153

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKA 264
             M K+G   +   +N +++ L K GK   A+  F+  E        +TY+++++ LCK 
Sbjct: 154 SKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKI 213

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
               +A+ L     ++G +        ++D L       EA  I S ++  +IS
Sbjct: 214 GETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRIS 267



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  ++N LCK    D AL  FR ++  G  P+  +YN++I+G  +      A 
Sbjct: 511 LLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAA 570

Query: 66  WILKELGDSGHAPNAITYT 84
            ++ E+ D G    A T T
Sbjct: 571 QLIGEMRDRGFVAEAGTTT 589


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 152/308 (49%), Gaps = 36/308 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ ++L  +C+N   + A+ +   ++  G  P +VTYN++I G+C+ GR+  AR +
Sbjct: 176 PNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREL 235

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  L   G  P+ ++YTT++K    ++++    E+ + M  K    +   +  +I  F +
Sbjct: 236 LNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCR 295

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A   +EQM   G   +    N +IN  CK+G+++ A+ LL++M   G   D  +
Sbjct: 296 GGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTIS 355

Query: 188 HTILIDGLCKA-----------------------------------GNIKGARLHLEYMN 212
           +T ++ GLC+A                                   G I+ A + +E M+
Sbjct: 356 YTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMS 415

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSAS 271
           + G    +  YN +V+     G ID A+ +F SM  K ++ TY++++  LC A+RL  A+
Sbjct: 416 EHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAA 475

Query: 272 KLLLSCLK 279
           +L+   L+
Sbjct: 476 ELVAEMLR 483



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 134/266 (50%), Gaps = 7/266 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N ++ G C+  + D A R+   +      P+  TY  LI+ LC  GR+  A  +L ++ 
Sbjct: 114 YNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDML 170

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN +TYT +++   RN  ++  + +L  M+ KG T +   Y  +I    + GR+ 
Sbjct: 171 RRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 230

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A + + ++ + G Q D VSY TL+   C   + +    L  EM ++    ++ T  +LI
Sbjct: 231 DARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLI 290

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
              C+ G ++ A   LE M + G  +N    N +++ + K G++D A  +   M      
Sbjct: 291 RFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCN 350

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D+ +Y++++  LC+A+R   A +LL
Sbjct: 351 PDTISYTTVLKGLCRAERWDDAKELL 376



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 136/279 (48%), Gaps = 7/279 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF++++   C+    + A+++   + +HG        NI+I  +CK GR+  A  +
Sbjct: 281 PNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKL 340

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++G  G  P+ I+YTT++K   R  ++    E+L+ M R     +   + T I    +
Sbjct: 341 LNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQ 400

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +++A   +EQM   G  + +V+YN L+N +C +G +++A  L   M  +    +  T
Sbjct: 401 KGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKP---NTIT 457

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+ GLC A  + GA   +  M +     N+  +N +V    + G ++ AI + E M 
Sbjct: 458 YTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMM 517

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 +  TY++++  + K      A +LL   +  GV
Sbjct: 518 EHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGV 556



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 154/337 (45%), Gaps = 36/337 (10%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI++N +CK    D+A ++   +  +G  P+ ++Y  ++KGLC+A R   A+ +L 
Sbjct: 318 TTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLN 377

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF---------DGF---- 116
           E+  +   PN +T+ T +    +    +  + ++  M   G T          +GF    
Sbjct: 378 EMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQG 437

Query: 117 -------------------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
                               Y T++       RL  A + + +M+      ++V++N L+
Sbjct: 438 HIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLV 497

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           + +C++G LE A  L+++M + G   +  T+  L+DG+ K  + + A   L  +   G  
Sbjct: 498 SFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVS 557

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            ++  ++ I+  L K+ +I+ A+ +F  ++       +  Y+ ++  LCK   + +A   
Sbjct: 558 PDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDF 617

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
               + +G    +S    +++GL H G  +EA+ + S
Sbjct: 618 FAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLS 654



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 97/198 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+  +L GLC     D A  +   + +    P +VT+N+L+   C+ G L  A  +
Sbjct: 453 PNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIEL 512

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++++ + G  PN ITY T++    ++   +  LE+L  +  KG + D   + ++I    K
Sbjct: 513 VEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSK 572

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R++EA      +   G++   V YN ++   CK  +++ A      M   G   ++ T
Sbjct: 573 EDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNEST 632

Query: 188 HTILIDGLCKAGNIKGAR 205
           + ILI+GL   G +K A+
Sbjct: 633 YIILIEGLAHEGLLKEAQ 650



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 86/180 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ GD  P   TFN++++  C+  + + A+ +   + +HG  P L+TYN L+ G+ K   
Sbjct: 481 MLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCS 540

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L  L   G +P+ IT+++I+    +  + +  +++   ++  G       Y  
Sbjct: 541 SEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNK 600

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K   +  A D+   MV++G   +  +Y  LI     EG L+ A  LL  +  +G
Sbjct: 601 ILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRG 660



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N +L+G+ K+  +++AL +  GL   G  P+++T++ +I  L K  R+  A  
Sbjct: 522 TPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQ 581

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   + D G  P A+ Y  I+    +  +    ++  + M   G   +   Y  +I    
Sbjct: 582 LFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLA 641

Query: 127 KIGRLKEATDYMEQMVTDGV 146
             G LKEA D +  + + GV
Sbjct: 642 HEGLLKEAQDLLSVLCSRGV 661



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 36/167 (21%)

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
           DG   D+     LI   C+ G+   A  +L   E  G   D + +  L+ G C+ G++  
Sbjct: 70  DGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 129

Query: 204 AR--------------------------------LHLEYMNKIGFDSNLEAYNCIVDRLG 231
           AR                                  L+ M + G   N+  Y  +++ + 
Sbjct: 130 ARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMC 189

Query: 232 KDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           ++   + A+ V + M  K    +  TY+ +++ +C+  R+  A +LL
Sbjct: 190 RNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELL 236


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 158/315 (50%), Gaps = 11/315 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI+L  LC     D A+ +F  L++    P+ +TY+ L+ GL K  RL  A 
Sbjct: 154 IAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHAL 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYCTVIAA 124
            +L E+  SG  P+ + Y  ++  CF+  +++  + +   + K  G   +   Y  ++  
Sbjct: 214 DLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR KE  +  E+MV + +Q D+++Y  LI+  C+ G ++ A  +  E+ K G   D
Sbjct: 274 LCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVID 333

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS--NLEAYNCIVDRLGKDGKIDHAINV 242
              +  L+ G C+AG ++ A    ++ +  GF    NL  YN ++  L   G +D AI +
Sbjct: 334 AAMYNSLVKGFCQAGRVQEA---WKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIEL 390

Query: 243 FESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           ++ +E     + D+ T+ +++H LC+      A  +      SG ++   +  ++++GL 
Sbjct: 391 WDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLC 450

Query: 298 HSGCRREAKKIQSKI 312
           + G   +A K+  K+
Sbjct: 451 NVGRLVDAVKVYEKM 465



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 139/309 (44%), Gaps = 39/309 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   T+ I+++GLC++   D A R++  + K G V +   YN L+KG C+AGR
Sbjct: 290 MVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGR 349

Query: 61  ------------------LRTARWILKELGDSGHA-----------------PNAITYTT 85
                             LRT   ++K L DSG                   P+ +T+ T
Sbjct: 350 VQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGT 409

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    +N        I    +  G   D F Y ++I     +GRL +A    E+M  DG
Sbjct: 410 LIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG 469

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            + +   YN LI+ +C+  +   A  +  +M   G      T+  LIDGLCKA   + A 
Sbjct: 470 CKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEAS 529

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
                M + GF  ++  Y  ++  L  D KID A+++++ +  K    D   ++ ++H L
Sbjct: 530 SVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGL 589

Query: 262 CKAKRLPSA 270
           C A ++  A
Sbjct: 590 CSAGKVDEA 598



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 117/236 (49%), Gaps = 1/236 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +++ M+NGLC      +A++++  + K G  P    YN LI G C+  R   A  I  ++
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM 500

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D+G +P  ITY T++    +  KY+    +   M   G+T D   Y ++I       ++
Sbjct: 501 ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKI 560

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL-EAAYLLLDEMEKQGFECDKYTHTI 190
            +A    +Q++  G+++D++ +N LI+  C  GK+ EA ++  D  EK+    +  T+  
Sbjct: 561 DDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNT 620

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           L+DGL + G I  A      + + G + ++ +YN  +  L    +I   I + + +
Sbjct: 621 LMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEV 676



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 3/231 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P +  +N +++G C+   T +A+R++  +  +G  P ++TYN LI GLCKA + + A  +
Sbjct: 472 PNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSV 531

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ ++G  P+  TY ++++  F ++K    L I   +  KG   D   +  +I     
Sbjct: 532 AREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCS 591

Query: 128 IGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            G++ EA      M        ++V+YNTL++   + G ++ A  L   + + G E D  
Sbjct: 592 AGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDII 651

Query: 187 THTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           ++   I GLC    I +G +L  E +++ G    +  +N +V  + K G I
Sbjct: 652 SYNTRIKGLCSCDRIHEGIQLLDEVLSR-GIIPTVITWNILVRAVIKYGPI 701



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 1/197 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +++GLCK      A  + R + ++GF P++ TY  LI+GL    ++  A  
Sbjct: 506 SPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALS 565

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-RKGYTFDGFGYCTVIAAF 125
           I K++   G   + + +  ++       K    L + S MK +K    +   Y T++   
Sbjct: 566 IWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGL 625

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + +A      +  DG++ DI+SYNT I   C   ++     LLDE+  +G     
Sbjct: 626 YETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTV 685

Query: 186 YTHTILIDGLCKAGNIK 202
            T  IL+  + K G I+
Sbjct: 686 ITWNILVRAVIKYGPIQ 702



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   T+  ++ GL  ++  D+AL +++ +   G   +++ +NILI GLC AG+
Sbjct: 535 MVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGK 594

Query: 61  LRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +  ++ +  +  PN +TY T+M   +          + +++   G   D   Y 
Sbjct: 595 VDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYN 654

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
           T I       R+ E    ++++++ G+   ++++N L+    K G ++
Sbjct: 655 TRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    +   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 VLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M+  G++ D  +Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 117/220 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D F Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
            + +  T+T++I+  CK G++      L+ M + G+  ++
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSV 416



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 142/309 (45%), Gaps = 4/309 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L      F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    + 
Sbjct: 60  GTLRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKL 119

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
                +E  + G+  +   +  +M    +  + +L   +  A+ + G       + T++ 
Sbjct: 120 VWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMN 179

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            ++K+G L E       M   GVQ D+ +Y+ LIN  CKE K++ A +L DEM  +G   
Sbjct: 180 GYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVP 239

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T T LIDG CK G +  A    + M       +L  YN ++  L K G +  A ++ 
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M +K    D FTY++++   CK   L +A +     +K  +R+   A  A++ GL   
Sbjct: 300 DEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQE 359

Query: 300 GCRREAKKI 308
           G   +A+K+
Sbjct: 360 GRSVDAEKM 368



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 120/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A    ++M+  G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M   G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ P+ +T
Sbjct: 407 MQRDGYKPSVVT 418


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 155/321 (48%), Gaps = 4/321 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T N ++NGLC       A+ +   +  +G  P   TY  ++  +CK+G 
Sbjct: 186 MVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGN 245

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             +A  +L+++      P+ +TYT I+    ++ +    L   S M+ KG   + F Y +
Sbjct: 246 TASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNS 305

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +F   GR  +    +  M+T  +  ++V+++ LI+   KEGKL  A  L +EM  +G
Sbjct: 306 LIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRG 365

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+  LI GLC    +  A   ++ M   G D ++  YN +++   K  ++D  +
Sbjct: 366 IEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGM 425

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M ++    D+ TYS+++   C++++L  A K+    +  GV         ++DGL
Sbjct: 426 RLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGL 485

Query: 297 RHSGCRREAKKIQSKIRMAKI 317
             +G   EA  I  ++   K+
Sbjct: 486 CDNGELEEALGILDQMHKCKM 506



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 39/352 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  +LN +CK+  T +AL + R ++     P +VTY I+I  LCK GR
Sbjct: 221 MMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGR 280

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A     E+   G   N  TY +++       ++  G ++L  M  +  T +   +  
Sbjct: 281 LDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSA 340

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I + VK G+L EA D   +M+T G++ + ++YN+LI   C + +L+ A  ++D M  +G
Sbjct: 341 LIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKG 400

Query: 181 FECDKYTHTILIDGLCKAGNIK-GARLH-------------------------------- 207
            + D +T+ ILI+G CKA  +  G RL                                 
Sbjct: 401 CDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAK 460

Query: 208 --LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
              + M   G    +  Y  ++D L  +G+++ A+ + + M       D   Y+ ++H +
Sbjct: 461 KVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGM 520

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           C A ++  A  L  S    GV+    +   ++ GL       EA  +  K++
Sbjct: 521 CNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMK 572



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 135/268 (50%), Gaps = 6/268 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N  C+ R    A      + K G+ P  VT+N L+ GLC  GR+  A  ++  +
Sbjct: 127 TLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCM 186

Query: 72  GDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
             S H P+ IT  TI+   C ++R  +  +++++ M   G   + F Y  ++    K G 
Sbjct: 187 VLSQHVPDLITLNTIVNGLCLKDRVSE-AVDLIARMMANGCQPNQFTYGPILNRMCKSGN 245

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
              A D + +M    ++  +V+Y  +I+  CK+G+L+ A     EME +G + + +T+  
Sbjct: 246 TASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNS 305

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI   C  G        L  M       N+  ++ ++D L K+GK+  A +++  M  + 
Sbjct: 306 LIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRG 365

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLL 274
              ++ TY+S+++ LC  KRL  A++++
Sbjct: 366 IEPNTITYNSLIYGLCNDKRLDEANQMM 393



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP   TF+ +++ L K      A  ++  +   G  P  +TYN LI GLC   R
Sbjct: 326 MITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKR 385

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++  +   G  P+  TY  ++    + ++   G+ +   M  +G   D   Y T
Sbjct: 386 LDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYST 445

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F +  +L  A    ++MV+ GV   I++Y  L++  C  G+LE A  +LD+M K  
Sbjct: 446 LIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCK 505

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D   + I+I G+C A  +  A      +   G   ++++YN ++  L K   +  A 
Sbjct: 506 MELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEAD 565

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+      D  TY++++    +   + ++ +L+    + G     S  K V+D L
Sbjct: 566 ALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDML 625



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 1/240 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+NI++NG CK +  D+ +R+FR +   G + + VTY+ LI+G C++ +
Sbjct: 396 MVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRK 455

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + +E+   G  P  +TY  ++     N + +  L IL  M +     D   Y  
Sbjct: 456 LIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNI 515

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I       ++ +A      + + GV+ DI SYN +++  CK   L  A  L  +M++ G
Sbjct: 516 IIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDG 575

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +E D  T+  LI    +  +I  +   +E M + GF S+      ++D L   G++D + 
Sbjct: 576 YEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDMLSS-GELDKSF 634



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 139/290 (47%), Gaps = 4/290 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F+ + +   +P ++ +N L   L +  +      + K++   G A +  T   +
Sbjct: 72  DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIM 131

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R RK       +  + + GY  +   + T++      GR+ EA + ++ MV    
Sbjct: 132 INCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQH 191

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
             D+++ NT++N  C + ++  A  L+  M   G + +++T+  +++ +CK+GN   A  
Sbjct: 192 VPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALD 251

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L  M       ++  Y  I+D L KDG++D A++ F  ME K    + FTY+S++ + C
Sbjct: 252 LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFC 311

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
              R    ++LL   +   +        A++D L   G   EAK + +++
Sbjct: 312 SFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEM 361


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 155/316 (49%), Gaps = 5/316 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N ++ GLC       AL     L   GF  + V+Y  LI GLCK G  +    +
Sbjct: 125 PNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARL 184

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L++L      P+ + Y TI+    +N+      ++ S M  KG + D   Y T+I  F  
Sbjct: 185 LRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCI 244

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G LKEA   + +M    +  ++ ++N LI+   KEGK++ A +LL  M K   + D +T
Sbjct: 245 MGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFT 304

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LIDG      +K A+     M + G   +++ Y  +++ L K   +D A+++FE M+
Sbjct: 305 YNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMK 364

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D  TY+S++  LCK   L  A  L     + G++    +   ++DGL  SG   
Sbjct: 365 HKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLE 424

Query: 304 EAKKIQSKIRMAKISH 319
           +AK+I  ++ +AK  H
Sbjct: 425 DAKEIFQRL-LAKGYH 439



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 145/286 (50%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T+  +++G C   +   A  +   ++     P + T+NILI  L K G+
Sbjct: 223 MIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGK 282

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ +L  +  +   P+  TY +++   F   + K    +  +M ++G T D   Y  
Sbjct: 283 MKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTN 342

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K   + EA    E+M    +  DIV+YN+LI+  CK   LE A  L   M++QG
Sbjct: 343 MINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQG 402

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D Y++TIL+DGLCK+G ++ A+   + +   G+  N+ AY  +++RL K G  D A+
Sbjct: 403 IQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEAL 462

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++   ME K    D+ T+  ++  L +      A K+L   +  G+
Sbjct: 463 DLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGL 508



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 141/312 (45%), Gaps = 6/312 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T  FN +L+ L  N++    + +F+  + +G  P+L T +ILI   C    +  A  
Sbjct: 54  PPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFS 113

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +   +   G  PNAIT  T++K  CFR  + K  L     +  +G+  D   Y T+I   
Sbjct: 114 VFANILKRGFHPNAITLNTLIKGLCFRG-EIKKALYFHDQLVAQGFQLDQVSYGTLINGL 172

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  K     + ++    V+ D+V YNT+IN  CK   L  A  +  EM  +G   D 
Sbjct: 173 CKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDV 232

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI G C  G++K A   L  M     + N+  +N ++D L K+GK+  A  +   
Sbjct: 233 VTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAV 292

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D FTY+S++        +  A  +  S  + GV         +++GL  +  
Sbjct: 293 MMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKM 352

Query: 302 RREAKKIQSKIR 313
             EA  +  +++
Sbjct: 353 VDEAMSLFEEMK 364


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 147/293 (50%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   ++ GLC       AL+    +   GF    V+Y  LI GLCK G+   A  +
Sbjct: 140 PNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQL 199

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN + Y TI+    + +      ++ S M  KG + D   Y  +I+ F  
Sbjct: 200 LRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCI 259

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G++K+ATD   +M+ + +  ++ ++N L++ +CKE +L+ A  +L  M KQG + D +T
Sbjct: 260 VGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFT 319

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+D  C    +  A+     +++ G + N+ +Y+ ++    K  K+D A+N+F+ M 
Sbjct: 320 YNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMH 379

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               + D  TY+S++  LCK  ++  A KL+      GV   K    +++D L
Sbjct: 380 CNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDAL 432



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 135/266 (50%), Gaps = 4/266 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+N +++G C      +A  +F  +      P + T+NIL+ G CK  R
Sbjct: 238 MVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERR 297

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A+ +L  +   G  P+  TY ++M      ++      I + + ++G   +   Y  
Sbjct: 298 LKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSI 357

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F KI ++ EA +  ++M  + +  D+V+YN+LI+  CK GK+  A  L+DEM  +G
Sbjct: 358 MIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 417

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              DK T+  ++D LCK   +  A   L  M   G   ++  Y  +VD L K+G+++ A 
Sbjct: 418 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDAR 477

Query: 241 NVFESMEVK----DSFTYSSMVHNLC 262
            VFE + VK    D   Y++M+   C
Sbjct: 478 IVFEDLLVKGYILDVNIYTAMIQGFC 503



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++ +CK +  + A  ++  +   G  P++VTYN LI G C  G+++ A 
Sbjct: 208 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDAT 267

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      PN  T+  ++    + R+ K    +L+ M ++G   D F Y +++  +
Sbjct: 268 DLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRY 327

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +  + +A      +   GV  +I SY+ +I+ +CK  K++ A  L  EM       D 
Sbjct: 328 CLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDV 387

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDGLCK G I  A   ++ M+  G   +   YN I+D L K+ ++D AI +   
Sbjct: 388 VTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTK 447

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      D  TY+++V  LCK  RL  A  +    L  G  +  +   A++ G    G 
Sbjct: 448 MKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGL 507

Query: 302 RREAKKIQSKIR 313
             E+  + SK+ 
Sbjct: 508 FDESLDLLSKME 519



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 139/286 (48%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TFNI+++G CK R    A  +   + K G  P++ TYN L+   C    
Sbjct: 273 MIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKE 332

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ I   +   G  PN  +Y+ ++    + +K    + +   M       D   Y +
Sbjct: 333 VNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNS 392

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+G++  A   +++M   GV  D ++YN++++  CK  +++ A  LL +M+ +G
Sbjct: 393 LIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEG 452

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+T L+DGLCK G ++ AR+  E +   G+  ++  Y  ++      G  D ++
Sbjct: 453 IQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESL 512

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++   ME    + ++ TY  ++ +L        A KLL   +  G+
Sbjct: 513 DLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 39/306 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L  L K+ +    + + R ++ +G   +LV  +ILI    + G+   +  +
Sbjct: 70  PSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSV 129

Query: 68  LKELGDSGHAPNAITYTTIMK-CC----------FRNRKYKLG----------------- 99
           L ++   G+ PN IT TT++K  C          F ++   LG                 
Sbjct: 130 LAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCK 189

Query: 100 -------LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
                  L++L  +  K    +   Y T+I +  K+  + EA D   +MV+ G+  D+V+
Sbjct: 190 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 249

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN LI+ +C  GK++ A  L ++M  +    + YT  IL+DG CK   +K A+  L  M 
Sbjct: 250 YNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMM 309

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
           K G   ++  YN ++DR     +++ A ++F ++  +    +  +YS M+H  CK K++ 
Sbjct: 310 KQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVD 369

Query: 269 SASKLL 274
            A  L 
Sbjct: 370 EAMNLF 375


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 142/285 (49%), Gaps = 16/285 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++NGLC+      A+ +   + + G  P  +TY  ++ G+CK G   +A  +
Sbjct: 79  PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 138

Query: 68  LKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L+++ +  H  P+ + Y+ I+   +++ ++     +   M+ KG   D   Y  +I  F 
Sbjct: 139 LRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFC 198

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G+  EA   +++M+   +  D+V+++ LIN   KEG L +A  LL EM   G   +  
Sbjct: 199 SSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVV 258

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKI-----------GFDSNLEAYNCIVDRLGKDGK 235
           T   L+DGLC +G +K A    + M K            G + +++ YN ++  L  +GK
Sbjct: 259 TCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGK 318

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
              A  ++E M     V D+ TYSSM++ LCK  RL  A+++  S
Sbjct: 319 FLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDS 363



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 16/316 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAG 59
           M+   L P   T+  +++G+CK   T +AL + R +++   + P++V Y+ +I GL K G
Sbjct: 107 MVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDG 166

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R   A+ +  E+ D G  P+ +TY+ ++     + K+     +L  M  +  + D   + 
Sbjct: 167 RHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFS 226

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK- 178
            +I A VK G L  A D +++M++ GV  ++V+ NTL++  C  GKL+ A  +   M+K 
Sbjct: 227 GLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286

Query: 179 ----------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
                      G E D  T+ ILI GL   G    A    E M   G   +   Y+ +++
Sbjct: 287 MMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346

Query: 229 RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            L K  ++D A  +F+SM  K    +  T+++++   CKA  +    +L     + G+  
Sbjct: 347 GLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVA 406

Query: 285 LKSAQKAVVDGLRHSG 300
                  ++ G R  G
Sbjct: 407 NAITYITLIRGFRKVG 422



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 2/171 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+++GL        A  ++  +   G VP+ VTY+ +I GLCK  RL  A  +
Sbjct: 301 PDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQM 360

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +G    +PN +T+ T++    +      GLE+   M R+G   +   Y T+I  F K
Sbjct: 361 FDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRK 420

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSY-NTLINLYCKEGKLEAAYLLLDEME 177
           +G +  + D  ++M++ GV  D ++  N L  L+ KE +L+ A  +L+E++
Sbjct: 421 VGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKE-ELKRALAMLEELQ 470



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 46/215 (21%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-----------HGFVPELVTYN 49
           MI   + P   T N +L+GLC +    +AL MF+ +QK           +G  P++ TYN
Sbjct: 248 MISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYN 307

Query: 50  ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           ILI GL   G+   A  + +E+   G  P+ +TY++++                      
Sbjct: 308 ILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN--------------------- 346

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
                  G C       K  RL EAT   + M +     +IV++NTLI  YCK G ++  
Sbjct: 347 -------GLC-------KQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
             L  EM ++G   +  T+  LI G  K GNI G+
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGS 427



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 46/244 (18%)

Query: 38  KHGF-VP-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           KHG  +P ++ ++NILIK  C   +L  A     +L   G  P  +T+ T++        
Sbjct: 6   KHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLH------- 58

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                                G C          R+ EA D   QM     + ++V++ T
Sbjct: 59  ---------------------GLCVE-------DRVSEALDLFHQMC----KPNVVTFTT 86

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L+N  C+EG++  A  LLD M + G + ++ T+  ++DG+CK G+   A   L  M ++ 
Sbjct: 87  LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS 146

Query: 216 -FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
               ++  Y+ I+D L KDG+   A N+F  M+ K    D  TYS M++  C + +   A
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEA 206

Query: 271 SKLL 274
            +LL
Sbjct: 207 QRLL 210



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 38/219 (17%)

Query: 138 MEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-------------- 181
           M   +  G+Q+  DI S+N LI  +C   KL  A     ++ K GF              
Sbjct: 1   MSNNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGL 60

Query: 182 -----------------ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
                            + +  T T L++GLC+ G +  A   L+ M + G   N   Y 
Sbjct: 61  CVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYG 120

Query: 225 CIVDRLGKDGKIDHAINVFESMEV-----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
            IVD + K G    A+N+   ME       D   YS+++  L K  R   A  L +    
Sbjct: 121 TIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQD 180

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            G+         +++G   SG   EA+++  ++ + KIS
Sbjct: 181 KGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKIS 219



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   TFN ++ G CK    D+ L +F  + + G V   +TY  LI+G  K G +  + 
Sbjct: 369 FSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSL 428

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
            I +E+  SG  P+ IT   ++   +   + K  L +L  ++
Sbjct: 429 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEELQ 470



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 178 KQGFE--CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           K G +  CD Y+  ILI   C    +  A      + K+GF   L  +N ++  L  + +
Sbjct: 6   KHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDR 65

Query: 236 IDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +  A+++F  M   +  T++++++ LC+  R+  A  LL   ++ G++  +     +VDG
Sbjct: 66  VSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 125

Query: 296 LRHSGCRREAKKIQSKIRMAKISH 319
           +   G    A  +  K  M ++SH
Sbjct: 126 MCKMGDTVSALNLLRK--MEELSH 147


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 143/289 (49%), Gaps = 6/289 (2%)

Query: 17  LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76
           +NGLCK      A+ +FR +++ G  P+  TYNILI GLCK  +L     ++ E+   G 
Sbjct: 98  INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
           +P  +TYTT++       +    ++IL  M+ +G T +   Y  +I      G ++ A  
Sbjct: 158 SPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAIL 217

Query: 137 YMEQMVTDGVQ--LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
            +++M   G +   ++V+Y  LI+  C++G  E     LDEM   G   +  T+T LI G
Sbjct: 218 VLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHG 277

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVKD 250
           LC+ G+   A + L  M  IG + ++  YN ++D L K G++D A    I + E     D
Sbjct: 278 LCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPD 337

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            FTY+S++  LC A  L  A  L+      G+         +++G   +
Sbjct: 338 VFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQA 386



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 139/273 (50%), Gaps = 6/273 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+NI++NGLCK+   +  + +   +Q  GF P +VTY  LI G C AGR+  A  I
Sbjct: 124 PDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDI 183

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT--FDGFGYCTVIAAF 125
           L E+   G  PN +TYT +++      + +  + +L  MK +G     +   Y  +I   
Sbjct: 184 LDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGL 243

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G  +   +++++M+  G   +  +Y  LI+  C++G    A +LL+EM   G E D 
Sbjct: 244 CQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDV 303

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  LIDGLCK G +  AR     M + G   ++  Y  ++  L   G +D A+ + + 
Sbjct: 304 VIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQE 363

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     V +S TY+++++   +A R   A +L+
Sbjct: 364 MRAKGIVPNSVTYTTLINGFTQADRTDHALQLV 396



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 37/244 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRT 63
           +TP T T+  ++ GLC     + A+ + + ++  G    P +VTY  LI GLC+ G    
Sbjct: 192 ITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEM 251

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
               L E+  SG  PN  TYT ++                             G C    
Sbjct: 252 GMEFLDEMIISGCFPNNATYTALIH----------------------------GLC---- 279

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + G   EA   + +MV  G +LD+V YN+LI+  CK G+L+ A  +   M ++G   
Sbjct: 280 ---QKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAP 336

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +T+T LI GLC AG +  A   ++ M   G   N   Y  +++   +  + DHA+ + 
Sbjct: 337 DVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLV 396

Query: 244 ESME 247
             M+
Sbjct: 397 NEMK 400



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 79/174 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLC+    +  +     +   G  P   TY  LI GLC+ G    A  +
Sbjct: 231 PNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVL 290

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G   + + Y +++    +  +     E+   M  KG   D F Y ++I     
Sbjct: 291 LNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCD 350

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
            G L EA   M++M   G+  + V+Y TLIN + +  + + A  L++EM+  G 
Sbjct: 351 AGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGL 404



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 69/146 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P  AT+  +++GLC+      A  +   +   G   ++V YN LI GLCK G 
Sbjct: 259 MIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGE 318

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +   + + G AP+  TYT++++           L ++  M+ KG   +   Y T
Sbjct: 319 LDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTT 378

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGV 146
           +I  F +  R   A   + +M ++G+
Sbjct: 379 LINGFTQADRTDHALQLVNEMKSNGL 404



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  ++ GLC     D AL + + ++  G VP  VTY  LI G  +A R
Sbjct: 329 MVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADR 388

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCF 91
              A  ++ E+  +G  P    Y  + K  +
Sbjct: 389 TDHALQLVNEMKSNGLMPAGDIYKILFKSLY 419


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 134/271 (49%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLC   +   AL     +   GF  + V+Y  LI GLCK GR+  A  +
Sbjct: 129 PTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQL 188

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK +      PNA+ Y  I+    + +      ++ S M  K    D F Y  +I+ F  
Sbjct: 189 LKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSA 248

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + +L  A D   +M  + +  ++ ++N L++ +CKEGK+  A ++L  M K   + D  T
Sbjct: 249 VSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVT 308

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A+   + M   G  +N++ Y  +V+   K   +D AIN+FE M 
Sbjct: 309 YNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMR 368

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + +  TYSS++  LCK  R+  A KL+
Sbjct: 369 CRKIIPNVVTYSSLIDGLCKLGRIFYALKLV 399



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 136/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++G       + A+ +F  ++K    P + T+NIL+ G CK G+
Sbjct: 227 MVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGK 286

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L  +      P+ +TY ++M       K     +I  +M   G   +   Y T
Sbjct: 287 VNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTT 346

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F KI  + EA +  E+M    +  ++V+Y++LI+  CK G++  A  L+DEM  +G
Sbjct: 347 MVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRG 406

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T++ ++D LCK  ++  A   L  +   G   ++  Y  ++  L + G+++ A 
Sbjct: 407 QPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQ 466

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           NVFE + VK    D + Y+ M+   C       A  LL
Sbjct: 467 NVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALL 504



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 103/195 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M  G +      +  M+NG CK +  D A+ +F  ++    +P +VTY+ LI GLCK GR
Sbjct: 332 MASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGR 391

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++ E+ D G  PN +TY++I+    +N      + +L+ +K +G   D + Y  
Sbjct: 392 IFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTI 451

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + GRL++A +  E ++  G  LD+ +Y  +I  +C +G  + A  LL +ME  G
Sbjct: 452 LIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNG 511

Query: 181 FECDKYTHTILIDGL 195
              +  T+ ++I  L
Sbjct: 512 CIPNAKTYELVILSL 526



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N++++ +CK +  ++A  ++  +      P++ TYN LI G     +L  A 
Sbjct: 197 VQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAI 256

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      PN  T+  ++    +  K      +L+ M +     D   Y +++  +
Sbjct: 257 DLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGY 316

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             I ++ +A D  + M + GV  ++  Y T++N +CK   ++ A  L +EM  +    + 
Sbjct: 317 CSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNV 376

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LIDGLCK G I  A   ++ M+  G   N+  Y+ I+D L K+  +D AI +  +
Sbjct: 377 VTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTN 436

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++ +    D +TY+ ++  LC++ RL  A  +    L  G  +   A   ++ G    G 
Sbjct: 437 LKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGF 496

Query: 302 RREAKKIQSKIR 313
             +A  + SK+ 
Sbjct: 497 FDKALALLSKME 508



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 150/332 (45%), Gaps = 45/332 (13%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP T  FN +L+ L K ++   AL + + ++ +G   +  T+NILI    + G    +  
Sbjct: 58  TPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFS 117

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           I  ++   G+ P AIT+ T++K  C +   ++  L     +  +G+  D   Y T+I   
Sbjct: 118 IFAKILKKGYHPTAITFNTLIKGLCLKGHIHQ-ALHFHDKVVAQGFHLDQVSYGTLINGL 176

Query: 126 VKIGRL-----------------------------------KEATDYMEQMVTDGVQLDI 150
            K+GR+                                    +A D   QMV   +  D+
Sbjct: 177 CKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDV 236

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +YN LI+ +    KL  A  L ++M+K+    + YT  IL+DG CK G +  A++ L  
Sbjct: 237 FTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAI 296

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M K     ++  YN ++D      K++ A ++F+SM     + +   Y++MV+  CK K 
Sbjct: 297 MMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKM 356

Query: 267 LPSASKLL--LSCLKSGVRILKSAQKAVVDGL 296
           +  A  L   + C K    ++  +  +++DGL
Sbjct: 357 VDEAINLFEEMRCRKIIPNVVTYS--SLIDGL 386



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 4/302 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++NGLCK      AL++ + +      P  V YN++I  +CKA  +  A  +  +
Sbjct: 167 VSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQ 226

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +      P+  TY  ++       K    +++ + MK++    + + +  ++  F K G+
Sbjct: 227 MVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGK 286

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + +A   +  M+ D ++ D+V+YN+L++ YC   K+  A  + D M   G   +   +T 
Sbjct: 287 VNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTT 346

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           +++G CK   +  A    E M       N+  Y+ ++D L K G+I +A+ + + M    
Sbjct: 347 MVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRG 406

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
           +  +  TYSS++  LCK   +  A  LL +    G+R        ++ GL  SG   +A+
Sbjct: 407 QPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQ 466

Query: 307 KI 308
            +
Sbjct: 467 NV 468



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 127/274 (46%), Gaps = 5/274 (1%)

Query: 27  DNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           +N +  F  L  H    P    +N ++  L KA    TA  + +++  +G   +  T+  
Sbjct: 42  NNLISSFNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNI 101

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++ C  +     L   I + + +KGY      + T+I      G + +A  + +++V  G
Sbjct: 102 LINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQG 161

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
             LD VSY TLIN  CK G++ AA  LL  ++ +  + +   + ++ID +CKA  +  A 
Sbjct: 162 FHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAF 221

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
                M       ++  YN ++       K+++AI++F  M+ +    + +T++ +V   
Sbjct: 222 DLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGF 281

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           CK  ++  A  +L   +K  ++       +++DG
Sbjct: 282 CKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDG 315



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 71/140 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T++ +L+ LCKN + D A+ +   L+  G  P++ TY ILIKGLC++GRL  A+ 
Sbjct: 408 PPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQN 467

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + ++L   G+  +   YT +++       +   L +LS M+  G   +   Y  VI +  
Sbjct: 468 VFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLF 527

Query: 127 KIGRLKEATDYMEQMVTDGV 146
           +      A   + +M+  G+
Sbjct: 528 EKDENDTAEKLLREMIVRGL 547



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C  + P   T++ +++GLCK      AL++   +   G  P +VTY+ ++  LCK   
Sbjct: 367 MRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHH 426

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L  L D G  P+  TYT ++K   ++ + +    +   +  KGY  D + Y  
Sbjct: 427 VDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTV 486

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F   G   +A   + +M  +G   +  +Y  +I    ++ + + A  LL EM  +G
Sbjct: 487 MIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRG 546


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 142/285 (49%), Gaps = 16/285 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++NGLC+      A+ +   + + G  P  +TY  ++ G+CK G   +A  +
Sbjct: 79  PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 138

Query: 68  LKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L+++ +  H  P+ + Y+ I+   +++ ++     +   M+ KG   D   Y  +I  F 
Sbjct: 139 LRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFC 198

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G+  EA   +++M+   +  D+V+++ LIN   KEG L +A  LL EM   G   +  
Sbjct: 199 SSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVV 258

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKI-----------GFDSNLEAYNCIVDRLGKDGK 235
           T   L+DGLC +G +K A    + M K            G + +++ YN ++  L  +GK
Sbjct: 259 TCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGK 318

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
              A  ++E M     V D+ TYSSM++ LCK  RL  A+++  S
Sbjct: 319 FLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDS 363



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 16/316 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAG 59
           M+   L P   T+  +++G+CK   T +AL + R +++   + P++V Y+ +I GL K G
Sbjct: 107 MVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDG 166

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R   A+ +  E+ D G  P+ +TY+ ++     + K+     +L  M  +  + D   + 
Sbjct: 167 RHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFS 226

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK- 178
            +I A VK G L  A D +++M++ GV  ++V+ NTL++  C  GKL+ A  +   M+K 
Sbjct: 227 GLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286

Query: 179 ----------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
                      G E D  T+ ILI GL   G    A    E M   G   +   Y+ +++
Sbjct: 287 MMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346

Query: 229 RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            L K  ++D A  +F+SM  K    +  T+++++   CKA  +    +L     + G+  
Sbjct: 347 GLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVA 406

Query: 285 LKSAQKAVVDGLRHSG 300
                  ++ G R  G
Sbjct: 407 NAITYITLIRGFRKVG 422



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 2/171 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+++GL        A  ++  +   G VP+ VTY+ +I GLCK  RL  A  +
Sbjct: 301 PDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQM 360

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +G    +PN +T+ T++    +      GLE+   M R+G   +   Y T+I  F K
Sbjct: 361 FDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRK 420

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSY-NTLINLYCKEGKLEAAYLLLDEME 177
           +G +  + D  ++M++ GV  D ++  N L  L+ KE +L+ A  +L+E++
Sbjct: 421 VGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKE-ELKKALAMLEELQ 470



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 46/215 (21%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-----------HGFVPELVTYN 49
           MI   + P   T N +L+GLC +    +AL MF+ +QK           +G  P++ TYN
Sbjct: 248 MISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYN 307

Query: 50  ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           ILI GL   G+   A  + +E+   G  P+ +TY++++                      
Sbjct: 308 ILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN--------------------- 346

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
                  G C       K  RL EAT   + M +     +IV++NTLI  YCK G ++  
Sbjct: 347 -------GLC-------KQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
             L  EM ++G   +  T+  LI G  K GNI G+
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGS 427



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 46/244 (18%)

Query: 38  KHGF-VP-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           KHG  +P ++ ++NILIK  C   +L  A     +L   G  P  +T+ T++        
Sbjct: 6   KHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLH------- 58

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                                G C          R+ EA D   QM     + ++V++ T
Sbjct: 59  ---------------------GLCVE-------DRVSEALDLFHQMC----KPNVVTFTT 86

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L+N  C+EG++  A  LLD M + G + ++ T+  ++DG+CK G+   A   L  M ++ 
Sbjct: 87  LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS 146

Query: 216 -FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
               ++  Y+ I+D L KDG+   A N+F  M+ K    D  TYS M++  C + +   A
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEA 206

Query: 271 SKLL 274
            +LL
Sbjct: 207 QRLL 210



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 38/219 (17%)

Query: 138 MEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-------------- 181
           M   +  G+Q+  DI S+N LI  +C   KL  A     ++ K GF              
Sbjct: 1   MSNNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGL 60

Query: 182 -----------------ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
                            + +  T T L++GLC+ G +  A   L+ M + G   N   Y 
Sbjct: 61  CVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYG 120

Query: 225 CIVDRLGKDGKIDHAINVFESMEV-----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
            IVD + K G    A+N+   ME       D   YS+++  L K  R   A  L +    
Sbjct: 121 TIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQD 180

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            G+         +++G   SG   EA+++  ++ + KIS
Sbjct: 181 KGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKIS 219



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   TFN ++ G CK    D+ L +F  + + G V   +TY  LI+G  K G +  + 
Sbjct: 369 FSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSL 428

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
            I +E+  SG  P+ IT   ++   +   + K  L +L  ++
Sbjct: 429 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQ 470



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 178 KQGFE--CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           K G +  CD Y+  ILI   C    +  A      + K+GF   L  +N ++  L  + +
Sbjct: 6   KHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDR 65

Query: 236 IDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +  A+++F  M   +  T++++++ LC+  R+  A  LL   ++ G++  +     +VDG
Sbjct: 66  VSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 125

Query: 296 LRHSGCRREAKKIQSKIRMAKISH 319
           +   G    A  +  K  M ++SH
Sbjct: 126 MCKMGDTVSALNLLRK--MEELSH 147


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 144/297 (48%), Gaps = 5/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++G CK    + A  +   +++ G  P L  +  L+      GR   A  +
Sbjct: 246 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 305

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G AP+ I YT+++   F   +      +  +M  KG   D   Y T+I  F K
Sbjct: 306 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 365

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG ++ A + +E M   GV  D  +YN+L++ Y K  +++ A+ + D M   G + +  T
Sbjct: 366 IGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVT 425

Query: 188 HTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
             +L+ GL K G    A  L  E + K      L +Y  ++D LGK G++  A   F+ M
Sbjct: 426 FNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEM 485

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
                + +  TY+S++++L KA R+P A KL+   +K GV     A  A++ GL  S
Sbjct: 486 IDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS 542



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 136/298 (45%), Gaps = 4/298 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +  +++GL K    ++ L+ F  +     VP   TY ++I GLCKA  L  A  
Sbjct: 140 SPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACK 199

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +++   G  P+ ITYTT++    +  K     ++L  M  KG       Y +++  F 
Sbjct: 200 VFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFC 259

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+  + EA + + QM   G +  +  + +L++ Y  +G+ E AY +L EM  +G   D  
Sbjct: 260 KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVI 319

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +T LID L   G +  AR   + M + G   +   Y  I+    K G ++ A  + E M
Sbjct: 320 LYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELM 379

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                  D F Y+S++    K +R+  A  +    + SG++        ++ GL   G
Sbjct: 380 AKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG 437



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 137/288 (47%), Gaps = 4/288 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++  ++ GL  ++  D A  +F  L+  G  P +V Y  +I GL KAGR+       +E+
Sbjct: 110 SYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEM 169

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             S   P   TYT ++    + +      ++   M +KG   D   Y T+I  F K  ++
Sbjct: 170 SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKM 229

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA   ++ M+T G +   V+Y ++++ +CK   +  A  ++ +M ++G E   +  T L
Sbjct: 230 DEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSL 289

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +      G  + A   L  M   G   ++  Y  ++D L   G++  A +VF+SM  K  
Sbjct: 290 LSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGC 349

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             D+ TY +++ N  K   + +A ++L    KSGV     A  +++DG
Sbjct: 350 APDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDG 397



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 134/276 (48%), Gaps = 10/276 (3%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P +V+YN +I GL    ++  A      + D+G  P+ I +TT++    +  + ++G ++
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 103 LS-AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           L+ A+KR  +  D F Y +VI  + K G L   T Y  + VT    LD++SY T+I    
Sbjct: 65  LNQALKR--FRPDVFLYTSVIHGYCKAGDLD--TGYF-RAVTPKASLDVISYTTVIKGLA 119

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
              +++ A  L +E++  G   +   +T +IDGL KAG I+    + E M+         
Sbjct: 120 DSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRT 179

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            Y  ++D L K   +  A  VFE M     V D+ TY++++    KA ++  A KLL   
Sbjct: 180 TYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVM 239

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           L  G         ++V G        EAK++ +++R
Sbjct: 240 LTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMR 275



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 36/275 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L+        + A ++   +   G  P+++ Y  LI  L   GR+  AR +
Sbjct: 281 PGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHV 340

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + + G AP+A+TY TI++   +    +   EIL  M + G   D F Y +++  +VK
Sbjct: 341 FDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVK 400

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKY 186
           + R+ +A    ++MV  G++ + V++N L++   K+GK + A+ L  EM EK+       
Sbjct: 401 LERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLV 460

Query: 187 THTILIDGL-----------------------------------CKAGNIKGARLHLEYM 211
           ++TILIDGL                                    KAG I  A+  +E M
Sbjct: 461 SYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 520

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            K+G + +++AY+ ++  L     +D A +VF+ M
Sbjct: 521 VKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM 555



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 8/278 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +++GL      D A + F  +  +G  P+++ +  LI G CKAG+ +    +
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +       P+   YT+++    +      G     A+  K  + D   Y TVI     
Sbjct: 65  LNQ-ALKRFRPDVFLYTSVIHGYCKAGDLDTGY--FRAVTPKA-SLDVISYTTVIKGLAD 120

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA +  E++ T G   ++V+Y  +I+   K G++E      +EM        + T
Sbjct: 121 SKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T++IDGLCKA  +  A    E M + G   +   Y  ++D   K  K+D A  + + M 
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            K     + TY S+VH  CK   +  A +++    + G
Sbjct: 241 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG 278



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 91/200 (45%), Gaps = 36/200 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAG 59
           M+   + P   TFN++++GL K+  TD A  +F+  L+K    P LV+Y ILI GL KAG
Sbjct: 414 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAG 473

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+  A    +E+ D G  P   TYT++                                 
Sbjct: 474 RVSEAFLQFQEMIDRGIIPECHTYTSL--------------------------------- 500

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
             I +  K GR+ EA   +E MV  GV  D+ +Y+ LI        ++ A+ +  EM K+
Sbjct: 501 --IYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKR 558

Query: 180 GFECDKYTHTILIDGLCKAG 199
           G   ++ T+ +L  G   AG
Sbjct: 559 GCAPNEVTYKVLRRGFRAAG 578



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-G 203
           G +  IVSYNT+I+      K++ AY   + M   G E D    T LI G CKAG  + G
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 260
            +L  + + +  F  ++  Y  ++    K G +D     F ++  K   D  +Y++++  
Sbjct: 62  HKLLNQALKR--FRPDVFLYTSVIHGYCKAGDLD--TGYFRAVTPKASLDVISYTTVIKG 117

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           L  +KR+  A +L      +G      A  AV+DGL  +G
Sbjct: 118 LADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAG 157



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 1/145 (0%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   ++ I+++GL K      A   F+ +   G +PE  TY  LI  L KAGR+  A
Sbjct: 454 EVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEA 513

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +++++   G  P+   Y+ ++     +       ++   M ++G   +   Y  +   
Sbjct: 514 KKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRG 573

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLD 149
           F   GR  +  + ++Q  + GV ++
Sbjct: 574 FRAAGRALD-LEAVKQHFSQGVAME 597


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 39/305 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNI+++  C+N   D  + +   +  HG +P+++TY  +I G CK G +  A  +LK +
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN I+YT ++K                            G C+         R 
Sbjct: 429 TACGCKPNTISYTIVLK----------------------------GLCSA-------ERW 453

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D M QM+  G  L+ +++NTLIN  CK+G +E A  LL +M   G   D  +++ +
Sbjct: 454 VDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTV 513

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGL KAG    A   L  M   G   N   Y+ I   L ++G+I+  I +F++++    
Sbjct: 514 IDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTI 573

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+  Y++++ +LCK      A + L   + SG    +S    ++ GL   G  +EA++
Sbjct: 574 RSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQE 633

Query: 308 IQSKI 312
           + +++
Sbjct: 634 MLTEL 638



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 138/272 (50%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFN +++ LC+N   +    +   + +HG  P++  Y  +I G+CK G L+ A  
Sbjct: 259 PPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHE 318

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL  +   G  PN + Y T++K      +++   E+L+ M  K    D   +  ++  F 
Sbjct: 319 ILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFC 378

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G +    + +EQM+  G   D+++Y T+IN +CKEG ++ A +LL  M   G + +  
Sbjct: 379 QNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTI 438

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++TI++ GLC A     A   +  M + G   N   +N +++ L K G ++ AI + + M
Sbjct: 439 SYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM 498

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            V     D  +YS+++  L KA +   A +LL
Sbjct: 499 LVNGCSPDLISYSTVIDGLGKAGKTDEALELL 530



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 137/272 (50%), Gaps = 4/272 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N++LN +C     D AL + R L   G  P++V+YN ++KGLC A R    + +++E+  
Sbjct: 196 NLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
               PN +T+ T++    RN  ++   E+L+ M   G T D   Y T+I    K G LK 
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKV 315

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A + + +M + G++ ++V YNTL+   C   + E    LL EM  +    D  T  IL+D
Sbjct: 316 AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVD 375

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----K 249
             C+ G +      LE M   G   ++  Y  +++   K+G ID A+ + +SM       
Sbjct: 376 FFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 435

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++ +Y+ ++  LC A+R   A  L+   ++ G
Sbjct: 436 NTISYTIVLKGLCSAERWVDAEDLMSQMIQQG 467



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 112/252 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NG CK    D A+ + + +   G  P  ++Y I++KGLC A R   A  +
Sbjct: 400 PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDL 459

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G   N IT+ T++    +    +  +E+L  M   G + D   Y TVI    K
Sbjct: 460 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 519

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  EA + +  MV  G+  + + Y+++ +   +EG++     + D ++      D   
Sbjct: 520 AGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVL 579

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I  LCK G  + A   L YM   G   N   Y  ++  L  +G +  A  +   + 
Sbjct: 580 YNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELC 639

Query: 248 VKDSFTYSSMVH 259
            K +     M H
Sbjct: 640 SKGALRKHLMKH 651



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 139/346 (40%), Gaps = 39/346 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++  LC      +AL +   + + G  P    Y+++++  C+ G  R+A 
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAV 177

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L++L   G A +      ++            L +L  +   G   D   Y  V+   
Sbjct: 178 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGL 237

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               R     + ME+MV      +IV++NTLI+  C+ G  E  + +L +M + G   D 
Sbjct: 238 CMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDI 297

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC-------------------- 225
             +  +IDG+CK G++K A   L  M   G   N+  YN                     
Sbjct: 298 RMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAE 357

Query: 226 ---------------IVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
                          +VD   ++G +D  I + E M V     D  TY+++++  CK   
Sbjct: 358 MFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGL 417

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  A  LL S    G +    +   V+ GL  +    +A+ + S++
Sbjct: 418 IDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 463



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 9/232 (3%)

Query: 48  YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYKLGLEILSAM 106
           YN ++ G C+AG+L +AR +   +      PNA TY  +++  C R R     L +L  M
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIAD-ALAVLDEM 148

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
            R+G       Y  ++ A  + G  + A   +E +   G  LD+ + N ++N  C +G +
Sbjct: 149 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A  LL ++   G E D  ++  ++ GLC A      +  +E M ++    N+  +N +
Sbjct: 209 DKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 227 VDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           +  L ++G  +    V   M       D   Y++++  +CK   L  A ++L
Sbjct: 269 ISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEIL 320


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 155/339 (45%), Gaps = 46/339 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T NI++  LCK    + AL     + + G  P+++TYN LI   CKAG +  A  +
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTL 441

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G   +  T  T++    + ++Y+   E+L +  ++G+  D   Y TV+AA+ K
Sbjct: 442 MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFK 501

Query: 128 -----------------------------------IGRLKEATDYMEQMVTDGVQLDIVS 152
                                              + RLKEA D + ++V  G+  D  +
Sbjct: 502 EYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETT 561

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN +I+ YCKEG LE A+   ++M +  F+ D  T   L++GLC  G +  A    E   
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
           + G   ++  YN ++  + K G +D A++ F+ MEVK    D+FTY+ ++  L +A R  
Sbjct: 622 EKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSE 681

Query: 269 SASKLLLSCLKSG-------VRILKSAQKAVVDGLRHSG 300
            A  +L     SG         +LK +     D   H G
Sbjct: 682 EAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEG 720



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 139/283 (49%), Gaps = 9/283 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN++++  C      +AL     +Q  G  P+ VTYN L+   C+ G L  AR
Sbjct: 204 LHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 263

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +   G AP   TY T++    R    K   +++ +M   G+  D   Y  +    
Sbjct: 264 ALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGL 323

Query: 126 VKIGRLKEA---TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            + G++ EA    D ME++ T     D+V+YNTL++   K      A  LL+EM  +G +
Sbjct: 324 CQAGKVDEAFRLKDEMERLST--ALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVK 381

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
               TH I++  LCK G ++ A   LE + + G   ++  YN ++D   K G +  A  +
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTL 441

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            + M  K    D+FT +++++NLCK KR   A +LL S  + G
Sbjct: 442 MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRG 484



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 7/272 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P  +T+N ++ GLC+      A+     L + G VP+  TYNI+I   CK G 
Sbjct: 515 MIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGD 574

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A     ++ ++   P+ +T  T+M     + K    L++  +   KG   D   Y T
Sbjct: 575 LENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNT 634

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K+G +  A  + + M   G+Q D  +YN +++   + G+ E A+ +L ++   G
Sbjct: 635 LIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694

Query: 181 FECDKYTHTILIDGLCKAGNIK--GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
                +   +L        ++K    +   E   K   D+ LE Y   ++ L   G++  
Sbjct: 695 KLSQSFACPLLKPSSADEADVKEHEGKPEAESSEK-AQDNALETYMERLNGLCTGGQLKE 753

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           A  V + M  K    DS TY +++  L K ++
Sbjct: 754 AKAVLDEMMQKGMPVDSSTYITLMEGLIKRQK 785



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 5/182 (2%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G L +A   +  M   G+  D V+YNTL+N +C++G L  A  LL  M++ G    + T+
Sbjct: 222 GTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTY 281

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             L+    + G IK A   +E M   GF+ +L  YN +   L + GK+D A  + + ME 
Sbjct: 282 NTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMER 341

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D  TY+++V    K +    A +LL      GV+        VV  L   G   
Sbjct: 342 LSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLE 401

Query: 304 EA 305
           EA
Sbjct: 402 EA 403


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+   PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 113/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +  VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A  Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      L+ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ +         + T++  ++K+G L 
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM       +  T T LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A K     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+    K G +R A+ +   +      P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ + +  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 9/219 (4%)

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           GY    + +  ++ +FVK G ++ A    + +    ++  +VS+NTL+N Y K G L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           + L + M+  G + D YT+++LI+GLCK   +  A    + M       N   +  ++D 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDG 250

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K+G++D A+ +++ M  +    D  TY+++++ LCK   L  A  L+      G++  
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 286 KSAQKAVVDGLRHSGCRREAKK-----IQSKIRMAKISH 319
           K     ++DG    G    A K     I+  IR+  +++
Sbjct: 311 KITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAY 349



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYMPSVVT 418


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 4/258 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +++ LCK R+ D+AL +F  ++  G  P ++TY+ LI  LC  GR   A  +L ++ 
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +    PN +T++ ++    +  K     ++   M ++    + F Y ++I  F  + RL 
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +E M+      ++V+YNTLIN +CK  +++    L  EM ++G   +  T+T LI
Sbjct: 376 EAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            G  +A +   A++  + M  +G   N+  YN ++D L K+GK+  A+ VFE ++     
Sbjct: 436 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 495

Query: 249 KDSFTYSSMVHNLCKAKR 266
            D +TY+ M+  +CKA +
Sbjct: 496 PDIYTYNIMIEGMCKAGK 513



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 147/297 (49%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  +++GL  +     A+ +   + + G  P+LVTY  ++ GLCK G    A  +
Sbjct: 181 PDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNL 240

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++  +    N + Y+T++    + R     L + + M+ KG   +   Y ++I+    
Sbjct: 241 LNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCN 300

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V+++ LI+ + K+GKL  A  L +EM K+  + + +T
Sbjct: 301 YGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFT 360

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI+G C    +  A+  LE M +     N+  YN +++   K  ++D  + +F  M 
Sbjct: 361 YSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMS 420

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               V ++ TY++++H   +A+   +A  +    +  GV         ++DGL  +G
Sbjct: 421 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 477



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 135/268 (50%), Gaps = 6/268 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NI++N  C+      AL +   + K G+ P++VT N L+ G C   R+  A  ++ ++
Sbjct: 115 TYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQM 174

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+ +T+TT++   F + K    + ++  M ++G   D   Y  V+    K G  
Sbjct: 175 VEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDT 234

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + + +M    ++ ++V Y+T+I+  CK    + A  L  EME +G   +  T++ L
Sbjct: 235 DLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSL 294

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           I  LC  G    A   L  M +   + NL  ++ ++D   K GK+  A  ++E M +K S
Sbjct: 295 ISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEM-IKRS 353

Query: 252 -----FTYSSMVHNLCKAKRLPSASKLL 274
                FTYSS+++  C   RL  A ++L
Sbjct: 354 IDPNIFTYSSLINGFCMLDRLGEAKQML 381



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 105/202 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ +++   K      A +++  + K    P + TY+ LI G C   R
Sbjct: 314 MIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDR 373

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ +L+ +      PN +TY T++    + ++   G+E+   M ++G   +   Y T
Sbjct: 374 LGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTT 433

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F +      A    +QMV+ GV  +I++YN L++  CK GKL  A ++ + +++  
Sbjct: 434 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 493

Query: 181 FECDKYTHTILIDGLCKAGNIK 202
            E D YT+ I+I+G+CKAG  K
Sbjct: 494 MEPDIYTYNIMIEGMCKAGKWK 515



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 138/290 (47%), Gaps = 4/290 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F  + +    P ++ ++ L+  + K  +        +++   G + N  TY  +
Sbjct: 60  DDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNIL 119

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  +  L L +L  M + GY  D     +++  F    R+ +A   ++QMV  G 
Sbjct: 120 INCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGY 179

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + D V++ TLI+      K   A  L+D M ++G + D  T+  +++GLCK G+   A  
Sbjct: 180 KPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALN 239

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L  M     ++N+  Y+ ++D L K    D A+N+F  ME K    +  TYSS++  LC
Sbjct: 240 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 299

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
              R   AS+LL   ++  +        A++D     G   +A+K+  ++
Sbjct: 300 NYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEM 349



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 4/252 (1%)

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  S   P+ I ++ ++    +  K+ L +     M+  G + + + Y  +I  F +  R
Sbjct: 69  MAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSR 128

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L  A   + +M+  G + DIV+ N+L+N +C   ++  A  L+D+M + G++ D  T T 
Sbjct: 129 LSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTT 188

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI GL        A   ++ M + G   +L  Y  +V+ L K G  D A+N+   ME   
Sbjct: 189 LIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAK 248

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              +   YS+++ +LCK +    A  L       GVR       +++  L + G   +A 
Sbjct: 249 IEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDAS 308

Query: 307 KIQSKIRMAKIS 318
           ++ S +   KI+
Sbjct: 309 RLLSDMIERKIN 320



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 35/134 (26%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV------------------ 42
           MI  D  P   T+N ++NG CK +  D  + +FR + + G V                  
Sbjct: 384 MIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 443

Query: 43  -----------------PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                            P ++TYNIL+ GLCK G+L  A  + + L  S   P+  TY  
Sbjct: 444 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 503

Query: 86  IMKCCFRNRKYKLG 99
           +++   +  K+K+G
Sbjct: 504 MIEGMCKAGKWKMG 517


>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 142/275 (51%), Gaps = 6/275 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P    FN ++ G+C+    D A    R +   G+ P++++Y+IL++GL    +
Sbjct: 51  MIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRK 110

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ ++   G  PN +TY+ ++    R+ K +  + +L  MK +G T D + Y  
Sbjct: 111 WEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDP 170

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IAAF K  R+  A +++E M++DG   DIV+YNT+++  CK GK + A  + +++ + G
Sbjct: 171 LIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVG 230

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  ++  L   L  +G+ I+   + LE ++K   D +   YN ++  L +D  +D A
Sbjct: 231 CPPNVSSYNTLFSALWSSGHKIRALGMILEMLSK-DIDPDEITYNSLISCLCRDAMVDQA 289

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSA 270
           I +   ME         +Y+ ++  L K  R+  A
Sbjct: 290 IELLVDMESSVYQPSVISYNIVLLGLSKVHRISDA 324



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 133/269 (49%), Gaps = 4/269 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I++         D+ +++   + + G  P++  +N ++ G+C+ G +  A   ++ 
Sbjct: 26  VTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRY 85

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G+AP+ I+Y+ +++     RK++ G +++S M  KG   +   Y  +I++  + G+
Sbjct: 86  ISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGK 145

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA   ++ M   G+  D  SY+ LI  +CKE +++ A   L+ M   G   D   +  
Sbjct: 146 VEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNT 205

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           ++  LCK G    A    E + ++G   N+ +YN +   L   G    A+ +   M  K 
Sbjct: 206 ILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMILEMLSKD 265

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLL 275
              D  TY+S++  LC+   +  A +LL+
Sbjct: 266 IDPDEITYNSLISCLCRDAMVDQAIELLV 294



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 99/202 (49%)

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           LVTY ILI+     G +     +L E+ +SG  P+   +  ++    R        E + 
Sbjct: 25  LVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIR 84

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            +  KGY  D   Y  ++   +   + ++    M  M++ G + ++V+Y+ LI+  C++G
Sbjct: 85  YISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDG 144

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K+E A  LL  M++QG   D Y++  LI   CK   +  A   LE M   G   ++  YN
Sbjct: 145 KVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYN 204

Query: 225 CIVDRLGKDGKIDHAINVFESM 246
            I+  L K+GK D A+ +FE +
Sbjct: 205 TILSTLCKNGKADEALKIFEKL 226



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 112/234 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++I+L GL   R  ++  ++   +   G  P +VTY+ILI  LC+ G++  A  +
Sbjct: 93  PDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEEAVSL 152

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK + + G  P+A +Y  ++    +  +  L +E L +M   G   D   Y T+++   K
Sbjct: 153 LKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCK 212

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  EA    E++   G   ++ SYNTL +     G    A  ++ EM  +  + D+ T
Sbjct: 213 NGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMILEMLSKDIDPDEIT 272

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           +  LI  LC+   +  A   L  M    +  ++ +YN ++  L K  +I  AI 
Sbjct: 273 YNSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNIVLLGLSKVHRISDAIE 326



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 102/200 (51%), Gaps = 6/200 (3%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y  +I A +  G + +    +++M+  G++ D+  +N ++   C+EG ++ A+  +  + 
Sbjct: 28  YTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYIS 87

Query: 178 KQGFECDKYTHTILIDGLCKAGNIK-GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            +G+  D  +++IL+ GL      + G +L  + ++K G + N+  Y+ ++  L +DGK+
Sbjct: 88  AKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSK-GCEPNVVTYSILISSLCRDGKV 146

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           + A+++ + M+      D+++Y  ++   CK  R+  A + L S +  G          +
Sbjct: 147 EEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTI 206

Query: 293 VDGLRHSGCRREAKKIQSKI 312
           +  L  +G   EA KI  K+
Sbjct: 207 LSTLCKNGKADEALKIFEKL 226



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    +N +L+ LCKN   D AL++F  L + G  P + +YN L   L  +G 
Sbjct: 191 MISDGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGH 250

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  ++ E+      P+ ITY +++ C  R+      +E+L  M+   Y      Y  
Sbjct: 251 KIRALGMILEMLSKDIDPDEITYNSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNI 310

Query: 121 VIAAFVKIGRLKEATD 136
           V+    K+ R+ +A +
Sbjct: 311 VLLGLSKVHRISDAIE 326


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 155/302 (51%), Gaps = 4/302 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           + +N +++   K  YT  AL ++R + + G  P+  T+N+L+    KA R+ +   + +E
Sbjct: 90  SAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEE 149

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + +   +PN ITY+ ++    +    +  L++   MK +G   + F Y ++I    K G 
Sbjct: 150 MQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGH 209

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + +A    E+M ++G+    V YN+LI+   + G+ +AA  L  EM  +G + D  T T 
Sbjct: 210 VDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTS 269

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           L+ GL  AG    AR   +    +G   ++  YN ++D L K  ++D A  +F  +E   
Sbjct: 270 LVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDG 329

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            V D +T+++++  LCK+ R+  A  LL    ++G     +    ++DGLR SG   EA 
Sbjct: 330 LVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAG 389

Query: 307 KI 308
           ++
Sbjct: 390 QL 391



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 136/272 (50%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T++I+++ +CK    + AL++F  ++  G  P + TY  +I GL K+G +  A +
Sbjct: 156 SPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFF 215

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +E+   G     + Y +++    R+ +     ++   M  KG   D   + +++    
Sbjct: 216 LFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLG 275

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             GR  EA    ++    G  LD+  YN LI+  CK  +L+ A+ +  E+E+ G   D Y
Sbjct: 276 VAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVY 335

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   L+DGLCK+G I  A + L  M + G   ++  YN ++D L K G+++ A  +   M
Sbjct: 336 TFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEM 395

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           +      D  TY++++   CK  R+  A +L 
Sbjct: 396 QSLGYEPDVVTYNTLIDESCKGGRIEDALRLF 427



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 9/272 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L      +N +++GL ++   D A ++FR +   G  P+ VT+  L+ GL  AGR
Sbjct: 220 MTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGR 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR I +E  D G A +   Y  ++    ++++     EI   ++  G   D + +  
Sbjct: 280 ASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNA 339

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K GR+ +A   +  M   G   D+  YNTLI+   K G++E A  LL EM+  G
Sbjct: 340 LMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLG 399

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +E D  T+  LID  CK G I+ A    E ++  GF +N   YN I++ L   G++D A 
Sbjct: 400 YEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF-ANTVTYNTILNGLCMAGRVDEAY 458

Query: 241 NVFESMEVK--------DSFTYSSMVHNLCKA 264
            +F  M+ +        D  TY+++++   +A
Sbjct: 459 KLFNGMKQETVDGVIDPDFVTYTTLLNGARQA 490



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 104/200 (52%), Gaps = 4/200 (2%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y ++I AFVK G  ++A      M   G++ D  ++N L+N + K  ++++ + L +EM+
Sbjct: 92  YNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQ 151

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            Q    +  T++ILID +CK G ++ A      M   G   N+  Y  ++D LGK G +D
Sbjct: 152 NQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVD 211

Query: 238 HAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            A  +FE M     V     Y+S++H L ++ R  +A+KL    L  G++       ++V
Sbjct: 212 KAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLV 271

Query: 294 DGLRHSGCRREAKKIQSKIR 313
            GL  +G   EA++I  + R
Sbjct: 272 YGLGVAGRASEARRIFQEAR 291



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 4/262 (1%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           L +G   AG L  +   LK +     A  A  Y +++    +    +  L +   M + G
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSG 119

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              D + +  ++ AF K  R+       E+M       ++++Y+ LI+  CK G +E A 
Sbjct: 120 LRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKAL 179

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +  +M+ +G   + +T+T +IDGL K+G++  A    E M   G  +    YN ++  L
Sbjct: 180 KVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGL 239

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
           G+ G+ D A  +F  M  K    D  T++S+V+ L  A R   A ++       G  +  
Sbjct: 240 GRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDV 299

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
           +    ++D L  S    EA +I
Sbjct: 300 NLYNVLIDTLCKSKRLDEAWEI 321



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKH---GFV-PELVTYNILIKGLCKAG 59
           T T+N +LNGLC     D A ++F G+++    G + P+ VTY  L+ G  +AG
Sbjct: 438 TVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAG 491


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFNI+++G C++     A ++F  +Q+ G  P +VTYN LI GLC  G+
Sbjct: 290 MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGK 349

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++   G  PN +TY  ++    + +  K   E+L  + ++G   +   + T
Sbjct: 350 LDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+ K GR+ +A      M+  GV  ++ +YN LI  +C+EG ++ A  L  EME  G
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARL--HLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            + D  T+ IL+D LCK G   K  RL   +  M K G  +N+  YN ++      GK++
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLE 529

Query: 238 HAINVFESM 246
            A  +   M
Sbjct: 530 EANRLLNEM 538



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 136/269 (50%), Gaps = 4/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF++++NGLCK      A  +   ++  GF P ++TYN +I G CKAG++  A  +LK
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+      PN IT+  ++    R+       ++   M+R+G   +   Y ++I      G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L EA    ++M   G++ ++V+YN LIN +CK+  L+ A  +LD++ K+G   +  T  
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            LID   KAG +  A L    M   G   N+  YNC++    ++G +  A  + + ME  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
               D  TY+ +V  LCK      A +LL
Sbjct: 469 GLKADLVTYNILVDALCKKGETRKAVRLL 497



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 3/234 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NGLC N   D AL +   +   G  P +VTYN LI G CK   L+ AR
Sbjct: 330 LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAR 389

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++G  G APN IT+ T++    +  +      + S M   G   +   Y  +I  F
Sbjct: 390 EMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGF 449

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM---EKQGFE 182
            + G +KEA    ++M  +G++ D+V+YN L++  CK+G+   A  LLDEM   EK+G  
Sbjct: 450 CREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRR 509

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            +  T+ +LI G C  G ++ A   L  M + G   N   Y+ + D + + G I
Sbjct: 510 ANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFI 563



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 139/284 (48%), Gaps = 7/284 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   T+N +++G CK      A  + + +      P  +T+NILI G C+   +  A+
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+   G  PN +TY +++     N K    L +   M   G   +   Y  +I  F
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   LKEA + ++ +   G+  +++++NTLI+ Y K G+++ A+LL   M   G   + 
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNV 439

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G C+ GN+K AR   + M   G  ++L  YN +VD L K G+   A+ + + 
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE 499

Query: 246 MEVKDS-------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M + +         TY+ ++   C   +L  A++LL   L+ G+
Sbjct: 500 MTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL 543



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 7/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTARWILKELGD 73
           +L+   KN +  N+  +F  L   G       +  ++L+    K G +  A       GD
Sbjct: 129 LLDSFAKNAHYSNS-TIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGD 187

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G   +A++   ++    +  +  +   +   M R+    +   +  VI    K+G+ ++
Sbjct: 188 YGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQK 247

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A D +E M   G    +++YNT+I+ YCK GK+  A  LL EM  +    ++ T  ILID
Sbjct: 248 AGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID 307

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           G C+  N+  A+   E M + G   N+  YN +++ L  +GK+D A+ + + M       
Sbjct: 308 GFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKP 367

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +  TY+++++  CK K L  A ++L    K G+
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGL 400


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 147/306 (48%), Gaps = 4/306 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   +++ ++NG C+    D   ++   +++ G  P    Y  +I  LC+  +L  A  
Sbjct: 278 TPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEE 337

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              E+   G  P+ + YTT++    +    +   +    M  +  T D   Y  +I+ F 
Sbjct: 338 AFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC 397

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +IG + EA     +M   G++ D V++  LIN YCK G ++ A+ + + M + G   +  
Sbjct: 398 QIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVV 457

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LIDGLCK G++  A   L  M KIG   N+  YN IV+ L K G I+ A+ +    
Sbjct: 458 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           E      D+ TY++++   CK+  +  A ++L   L  G++        +++G    G  
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577

Query: 303 REAKKI 308
            + +K+
Sbjct: 578 EDGEKL 583



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 156/304 (51%), Gaps = 6/304 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            A++NI+++ +C+      A  +   ++  G+ P++++Y+ ++ G C+ G L     +++
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  PN+  Y +I+    R  K     E  S M R+G   D   Y T+I  F K G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++ A+ +  +M +  +  D+++Y  +I+ +C+ G +  A  L  EM  +G E D  T T
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
            LI+G CKAG++K A R+H  +M + G   N+  Y  ++D L K+G +D A  +   M  
Sbjct: 426 ELINGYCKAGHMKDAFRVH-NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                + FTY+S+V+ LCK+  +  A KL+     +G+         ++D    SG   +
Sbjct: 485 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 544

Query: 305 AKKI 308
           A++I
Sbjct: 545 AQEI 548



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 147/313 (46%), Gaps = 4/313 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+TP   T+  +++G C+      A ++F  +   G  P+ VT+  LI G CKAG ++ A
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +   +  +G +PN +TYTT++    +        E+L  M + G   + F Y +++  
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G ++EA   + +    G+  D V+Y TL++ YCK G+++ A  +L EM  +G +  
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 560

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T  +L++G C  G ++     L +M   G   N   +N +V +      +  A  +++
Sbjct: 561 IVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYK 620

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M  +    D  TY ++V   CKA+ +  A  L       G  +  S    ++ G     
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 680

Query: 301 CRREAKKIQSKIR 313
              EA+++  ++R
Sbjct: 681 KFLEAREVFDQMR 693



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 142/298 (47%), Gaps = 8/298 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C  L P + TF  ++NG CK  +  +A R+   + + G  P +VTY  LI GLCK G 
Sbjct: 412 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 471

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A  +L E+   G  PN  TY +I+    ++   +  ++++   +  G   D   Y T
Sbjct: 472 LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT 531

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A+ K G + +A + +++M+  G+Q  IV++N L+N +C  G LE    LL+ M  +G
Sbjct: 532 LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 591

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T   L+   C   N+K A    + M   G   + + Y  +V    K   +  A 
Sbjct: 592 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW 651

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            +F+ M+ K       TYS ++    K K+   A ++     + G+    +A K + D
Sbjct: 652 FLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL----AADKEIFD 705



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 133/286 (46%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P T  +  +++G CK      A + F  +      P+++TY  +I G C+ G 
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+   G  P+++T+T ++    +    K    + + M + G + +   Y T
Sbjct: 402 MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 461

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A + + +M   G+Q +I +YN+++N  CK G +E A  L+ E E  G
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+T L+D  CK+G +  A+  L+ M   G    +  +N +++     G ++   
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   M  K    ++ T++S+V   C    L +A+ +       GV
Sbjct: 582 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGV 627



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 116/241 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NGLCK+   + A+++    +  G   + VTY  L+   CK+G +  A+
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ILKE+   G  P  +T+  +M     +   + G ++L+ M  KG   +   + +++  +
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                LK AT   + M + GV  D  +Y  L+  +CK   ++ A+ L  EM+ +GF    
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 666

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+++LI G  K      AR   + M + G  ++ E ++   D   K  + D  ++  + 
Sbjct: 667 STYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDE 726

Query: 246 M 246
           +
Sbjct: 727 I 727



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 144/347 (41%), Gaps = 40/347 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK-AGRLRTARWILKE 70
            F++    L        A R+F  +  +G V  + + N+ +  L K   +  TA  + +E
Sbjct: 177 VFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFRE 236

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
             + G   N  +Y  ++    +  + K    +L  M+ KGYT D   Y TV+  + + G 
Sbjct: 237 FPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGE 296

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L +    +E M   G++ +   Y ++I L C+  KL  A     EM +QG   D   +T 
Sbjct: 297 LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 356

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           LIDG CK G+I+ A      M+      ++  Y  I+    + G +  A  +F  M    
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416

Query: 247 -------------------EVKDSF----------------TYSSMVHNLCKAKRLPSAS 271
                               +KD+F                TY++++  LCK   L SA+
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           +LL    K G++       ++V+GL  SG   EA K+  +   A ++
Sbjct: 477 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN 523



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 10/208 (4%)

Query: 111 YTFDGFG-----YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE-G 164
           YT+  +G     +       V  G L+EA    E+M+  G+ L + S N  +    K+  
Sbjct: 166 YTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCY 225

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K   A ++  E  + G   +  ++ I+I  +C+ G IK A   L  M   G+  ++ +Y+
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 285

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +V+   + G++D    + E M+ K    +S+ Y S++  LC+  +L  A +     ++ 
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKI 308
           G+         ++DG    G  R A K 
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKF 373


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 155/309 (50%), Gaps = 9/309 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN +L+ LCK++  + A      + +  F  ++V+YNI+  G C   R   A  +LKE+
Sbjct: 184 SFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEM 243

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P   TY  ++K  FR  + K   E    MK +    D   Y T++  F  +G +
Sbjct: 244 VERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEI 303

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           K A     +MV +G+     +YN +I + CK+  +E A L+ +EM K+G+  +  T+ ++
Sbjct: 304 KRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVV 363

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EV 248
           I GL  AGN+  A   +E M   G + N++ YN  +      G ++  +++FE M    +
Sbjct: 364 IRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSL 423

Query: 249 KDSFTYSSMVHNLC---KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            +  TY+ ++  +    K++ L  A KLLL  +  G    K     V++GL  +G +  A
Sbjct: 424 PNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFA 483

Query: 306 KKI---QSK 311
           K+I   QSK
Sbjct: 484 KEILRLQSK 492



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 1/195 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+NI+L G  +      A   F  +++     ++VTY  ++ G    G 
Sbjct: 243 MVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGE 302

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ AR +  E+   G  P+  TY  +++   +    +  + +   M +KGY  +   Y  
Sbjct: 303 IKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNV 362

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI      G + +A +++E+M TDG + ++ +YN  I  +C  G +E    + ++M  QG
Sbjct: 363 VIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKM-GQG 421

Query: 181 FECDKYTHTILIDGL 195
              +  T+ +LI  +
Sbjct: 422 SLPNLDTYNVLISAM 436



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 119/271 (43%), Gaps = 39/271 (14%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + TF I+          D A+++F  +++HG   +L ++N ++  LCK+ R+  A   
Sbjct: 145 PSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMA--- 201

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
                          Y  + K      + K   +++S      Y     G+C        
Sbjct: 202 ---------------YNNLFKVL----RGKFKADVVS------YNIIANGWCL------- 229

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           I R  +A + +++MV  G+   I +YN L+  Y + G+L+ A+    +M+++  E D  T
Sbjct: 230 IKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVT 289

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +T ++ G    G IK AR     M   G   +   YN ++  L K   +++A+ +FE M 
Sbjct: 290 YTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMV 349

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
               V +  TY+ ++  L  A  +  A + +
Sbjct: 350 KKGYVPNLTTYNVVIRGLFHAGNMDKAMEFI 380



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 113/250 (45%), Gaps = 7/250 (2%)

Query: 58  AGRLR---TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           AGR+R   T   ++  +      P++ T+  I +      K    +++  +M+  G   D
Sbjct: 122 AGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQD 181

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
              + T++    K  R++ A + + +++    + D+VSYN + N +C   +   A  +L 
Sbjct: 182 LHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLK 241

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           EM ++G      T+ IL+ G  +AG +K A      M +   + ++  Y  +V   G  G
Sbjct: 242 EMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVG 301

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           +I  A  VF  M     +  + TY++M+  LCK   + +A  +    +K G     +   
Sbjct: 302 EIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYN 361

Query: 291 AVVDGLRHSG 300
            V+ GL H+G
Sbjct: 362 VVIRGLFHAG 371



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 10/253 (3%)

Query: 35  GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG-DSGHAPNAITYTTIMKCCFRN 93
           GLQ   F PELV  + ++K L   G    A    K L     +A +A ++   +    R 
Sbjct: 71  GLQLQ-FTPELV--DKVLKRLWFHGP--KALQFFKHLEYHPSYAHSASSFDHAIDIAGRM 125

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           R YK    +++ M+ +        +  +   FV  G+   A      M   G   D+ S+
Sbjct: 126 RDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSF 185

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           NT++++ CK  ++E AY  L ++ +  F+ D  ++ I+ +G C       A   L+ M +
Sbjct: 186 NTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVE 245

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G    +  YN ++    + G++  A   F  M+ +    D  TY++MVH       +  
Sbjct: 246 RGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKR 305

Query: 270 ASKLLLSCLKSGV 282
           A K+    +  G+
Sbjct: 306 ARKVFNEMVGEGI 318


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 132/273 (48%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G CK   + +AL +   ++ +   P   TYN LI G C+   +  A 
Sbjct: 375 LIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAM 434

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++ +    PN +TY  ++    +        ++LS M   G   D + Y   I   
Sbjct: 435 SLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTL 494

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G ++EA    E +   G++ + V Y+TLI+ YCK GK+     LLD+M   G   + 
Sbjct: 495 CKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNS 554

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDG CK  N K ARL ++ M K   +   + Y  ++D L KD + D A ++F+ 
Sbjct: 555 ITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQ 614

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M       D F Y++ +H  C   RL  A  L+
Sbjct: 615 MLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLI 647



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 143/293 (48%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ +++  LC+      AL MF+ + +    P + TY +LI  LC+      A+ I
Sbjct: 307 PTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKI 366

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  + + G  P+ +TY  ++    +       LEILS M+    + +   Y  +I  F +
Sbjct: 367 LNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCR 426

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A   + +M+   +Q ++V+YN LI+  CKEG L +AY LL  M + G   D++T
Sbjct: 427 GKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWT 486

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +++ ID LCK G ++ AR   E + + G  +N   Y+ ++D   K GK+     + + M 
Sbjct: 487 YSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKML 546

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               V +S TY+S++   CK K    A  L+   +K  +         ++D L
Sbjct: 547 SAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNL 599



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 39/298 (13%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N ++ G C+ +    A+ +   + +    P +VTYNILI G CK G L +A  
Sbjct: 411 SPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYK 470

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  + +SG  P+  TY+  +    +    +    +  ++K KG   +   Y T+I  + 
Sbjct: 471 LLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYC 530

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G++ +    +++M++ G   + ++YN+LI+ YCKE   + A LL+D M K+  E    
Sbjct: 531 KVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAAD 590

Query: 187 THTILIDGL-----------------------------------CKAGNIKGARLHLEYM 211
           T+TILID L                                   C  G +K A + +  M
Sbjct: 591 TYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKM 650

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-EV---KDSFTYSSMVHNLCKAK 265
           N  G   +   Y   +D  G+ G ID A  + + M EV      +TYS ++ +L  AK
Sbjct: 651 NAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAK 708



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 142/300 (47%), Gaps = 4/300 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  +++G C+ R  D AL++F  + +    P + TY ++I  LC+ GR   A  + KE
Sbjct: 275 VSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKE 334

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + +    PN  TYT ++     +  +    +IL+ M  KG       Y  +I  + K G 
Sbjct: 335 MTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGL 394

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
              A + +  M ++    +  +YN LI  +C+   +  A  LL +M ++  + +  T+ I
Sbjct: 395 SASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNI 454

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI G CK G++  A   L  MN+ G   +   Y+  +D L K G ++ A ++FES++ K 
Sbjct: 455 LIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKG 514

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              +   YS+++   CK  ++     LL   L +G         +++DG       +EA+
Sbjct: 515 IKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEAR 574



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 116/226 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+++ ++ LCK    + A  +F  L++ G     V Y+ LI G CK G++   R
Sbjct: 480 LVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGR 539

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++L ++  +G  PN+ITY +++    + + +K    ++  M ++        Y  +I   
Sbjct: 540 FLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNL 599

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K     +A D  +QM++ G   D+  Y   I+ YC  G+L+ A +L+ +M  +G   D 
Sbjct: 600 LKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDT 659

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
             +T+ ID   + G+I GA   L+ M+++G + +   Y+C++  L 
Sbjct: 660 MLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLS 705



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+  ++ G C+N+  D A  +F  +   G +   V+Y  LI G C+A R+  A  +  
Sbjct: 239 TFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFS 298

Query: 70  ELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           ++ +    P   TYT I+   C   RK +  L +   M  K    +   Y  +I +  + 
Sbjct: 299 QMHEDNCWPTVRTYTVIIFALCQLGRKTE-ALNMFKEMTEKHCQPNVHTYTVLICSLCED 357

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
               +A   +  M+  G+   +V+YN LI+ YCK+G   +A  +L  ME      +  T+
Sbjct: 358 SNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTY 417

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF----E 244
             LI G C+  NI  A   L  M +     N+  YN ++    K+G +  A  +     E
Sbjct: 418 NELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNE 477

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           S  V D +TYS  +  LCK   +  A  L  S  + G++  +     ++DG
Sbjct: 478 SGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDG 528



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 131/312 (41%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T N M+NG CK      A      + + G   +  TY  LI G C+   +  A 
Sbjct: 200 VTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAAN 259

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   + + G   N ++YT ++      R+    L++ S M           Y  +I A 
Sbjct: 260 AIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFAL 319

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++GR  EA +  ++M     Q ++ +Y  LI   C++   + A  +L+ M ++G     
Sbjct: 320 CQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSV 379

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDG CK G    A   L  M       N   YN ++    +   I  A+++   
Sbjct: 380 VTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHK 439

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    +  TY+ ++H  CK   L SA KLL    +SG+   +      +D L   G 
Sbjct: 440 MLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGL 499

Query: 302 RREAKKIQSKIR 313
             EA+ +   ++
Sbjct: 500 VEEARSLFESLK 511



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 4/266 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N++L  L +    D    ++  +      P + T N ++ G CK G +  A   + ++ 
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIV 231

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            +G + +  TYT+++    RN+       I  +M  KG   +   Y  +I  F +  R+ 
Sbjct: 232 QAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVD 291

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA     QM  D     + +Y  +I   C+ G+   A  +  EM ++  + + +T+T+LI
Sbjct: 292 EALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLI 351

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
             LC+  N   A+  L  M + G   ++  YN ++D   K G    A+ +   ME     
Sbjct: 352 CSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCS 411

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            ++ TY+ ++   C+ K +  A  LL
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLL 437



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 103/274 (37%), Gaps = 37/274 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P + T+N +++G CK +    A  +   + K    P   TY ILI  L K   
Sbjct: 545 MLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDE 604

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  ++  +G  P+   YT                                    
Sbjct: 605 FDQAHDMFDQMLSTGSHPDVFIYTAF---------------------------------- 630

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I A+   GRLK+A   + +M   G+  D + Y   I+ Y + G ++ A+ +L  M + G
Sbjct: 631 -IHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVG 689

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E   YT++ LI  L  A   + +          G  SN +  NC   R+  +  +D   
Sbjct: 690 CEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASN-DFSNCW-RRVDYEFTLDLFG 747

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + E     ++ TY   +  LCK   L  A +L 
Sbjct: 748 KMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLF 781



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 110/288 (38%), Gaps = 32/288 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D+ P   T+ I+++ L K+   D A  MF  +   G  P++  Y   I   C  GR
Sbjct: 580 MIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGR 639

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ ++   G  P+ + YT  +    R         IL  M   G     + Y  
Sbjct: 640 LKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSC 699

Query: 121 VIAAFVKIGRLKEAT------------------------------DYMEQMVTDGVQLDI 150
           +I       + KE +                              D   +M   G   + 
Sbjct: 700 LIKHLSN-AKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNA 758

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y   I   CK G LE A+ L D M+++G   ++  +  L+   C+ G    A   L+ 
Sbjct: 759 NTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDI 818

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMV 258
           M +     +L++   ++  L  +G  + A  VF S  ++  + Y  MV
Sbjct: 819 MIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSF-LQCEYNYDEMV 865



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 67/167 (40%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
            L +F  + +HG  P   TY   I GLCK G L  A  +   + + G +PN   Y +++ 
Sbjct: 742 TLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLG 801

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           C  +   Y   +  L  M    +         ++      G  ++A       +      
Sbjct: 802 CSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNY 861

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           D + +  LI+   K+G  +    L   ME QG +    T+++LI+G 
Sbjct: 862 DEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 4/306 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    F  +L  L K ++   A+ + R ++  G  P LVT NILI   C  G++  +  
Sbjct: 62  TPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFS 121

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++   G+ P+ IT  T+MK      + K  L     +  +G+  +   Y T++    
Sbjct: 122 VLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLC 181

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KIG  + A   +  +     + D+V Y+T+I+  CK+  +  AY    EM  +G   +  
Sbjct: 182 KIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVI 241

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LI G C AG + GA   L  M     + N+  YN ++D L K+GK+  A  +   M
Sbjct: 242 TYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEM 301

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             K    D  TY+S++  LCK++ L  A+ L +   K G++  K    A++DGL   G  
Sbjct: 302 HHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRL 361

Query: 303 REAKKI 308
           + A+K+
Sbjct: 362 KNAQKL 367



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 128/260 (49%), Gaps = 4/260 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       +L     +   GF    V+Y  L+ GLCK G  R A  +
Sbjct: 133 PDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKL 192

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ + D    P+ + Y+TI+    +++      +  S M  +G   +   Y T+I  F  
Sbjct: 193 LRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCL 252

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L  A   + +M+   +  ++ +YN LI+  CKEGK++ A  LL EM  +G   D  T
Sbjct: 253 AGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVT 312

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++DGLCK+ N+  A      M K G   N   Y  ++D L K G++ +A  +F+ + 
Sbjct: 313 YNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLL 372

Query: 248 VK----DSFTYSSMVHNLCK 263
           VK    D  TY+ M+  LCK
Sbjct: 373 VKGCCIDVRTYNVMISGLCK 392



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 156/312 (50%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T NI++N  C       +  +   + K G+ P+ +T N L+KGLC  G ++ + 
Sbjct: 96  IEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSL 155

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++   G   N ++Y T++    +  + +  +++L  ++ +    D   Y T+I   
Sbjct: 156 HFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGL 215

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   + +A D+  +M   G+  ++++Y+TLI  +C  G+L  A+ LL+EM  +    + 
Sbjct: 216 CKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNV 275

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+ ILID LCK G +K A+  L  M+  G  +++  YN ++D L K   +D A  +F  
Sbjct: 276 YTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMK 335

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      + +TY++++  LCK  RL +A KL    L  G  I       ++ GL   G 
Sbjct: 336 MKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGM 395

Query: 302 RREAKKIQSKIR 313
             +A  ++SK+ 
Sbjct: 396 FDKALAMKSKME 407



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 111/242 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++GLCK++  + A   F  +   G  P ++TY+ LI G C AG+L  A  +
Sbjct: 203 PDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSL 262

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      PN  TY  ++    +  K K   ++L+ M  KG   D   Y +V+    K
Sbjct: 263 LNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCK 322

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              L +AT    +M   G+Q +  +Y  LI+  CK G+L+ A  L   +  +G   D  T
Sbjct: 323 SQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRT 382

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + ++I GLCK G    A      M   G   N   ++ I+  L +  + D A  +   M 
Sbjct: 383 YNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMI 442

Query: 248 VK 249
            K
Sbjct: 443 AK 444



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 35/195 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   T+NI+++ LCK      A ++   +   G   ++VTYN ++ GLCK+  
Sbjct: 266 MILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQN 325

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++   G  PN  TYT ++                             G C 
Sbjct: 326 LDKATALFMKMKKWGIQPNKYTYTALID----------------------------GLC- 356

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                 K GRLK A    + ++  G  +D+ +YN +I+  CKEG  + A  +  +ME  G
Sbjct: 357 ------KGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNG 410

Query: 181 FECDKYTHTILIDGL 195
              +  T  I+I  L
Sbjct: 411 CIPNAVTFDIIIRSL 425



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+N +L+GLCK++  D A  +F  ++K G  P   TY  LI GLCK GRL+ A+ + +
Sbjct: 310 VVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQ 369

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            L   G   +  TY  ++    +   +   L + S M+  G   +   +  +I +  +  
Sbjct: 370 HLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKD 429

Query: 130 RLKEATDYMEQMVTDGV 146
              +A   +  M+  G+
Sbjct: 430 ENDKAEKLLHGMIAKGL 446


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 147/298 (49%), Gaps = 4/298 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           + L  L +    D+ LR FR +        + +  I++ GLCK G +   R ++ E+   
Sbjct: 195 VYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAK 254

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G   N +TY   ++  F+        EIL+ M+++G   +   Y  +I  F  IG+++EA
Sbjct: 255 GVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEA 314

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
               E+M   G++ D+  Y ++I+  C+ G ++ A +L DEM  +G     +T+  LI G
Sbjct: 315 QRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHG 374

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
           +CKAG ++ A++ +  M   G D N   +N ++D   + G +D A+ +   ME K    D
Sbjct: 375 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 434

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            F Y+S+   LCK  R   A  LL S ++ GV     +   ++D     G   EAK++
Sbjct: 435 VFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRV 492



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 144/343 (41%), Gaps = 39/343 (11%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+N  + G  K         +   ++K G    +VTY +LI G    G++  A+ + +
Sbjct: 260 VVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFE 319

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ + G   +   YT+I+ C  R+   K  L +   M  KG       Y  +I    K G
Sbjct: 320 EMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG 379

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH- 188
           +++ A   + +M   G+ L+ V +NTLI+ YC+ G ++ A  L   MEK+G E D + + 
Sbjct: 380 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 439

Query: 189 ----------------------------------TILIDGLCKAGNIKGARLHLEYMNKI 214
                                             T LID  CK GN   A+     M + 
Sbjct: 440 SIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEK 499

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G   N+  YN ++D   K G +  A  + + +E    + D +T +S++H  C   ++  A
Sbjct: 500 GNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMA 559

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            KL     + G+        A++ GL   G   EA K+  +++
Sbjct: 560 LKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMK 602



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 149/318 (46%), Gaps = 6/318 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+     +  I+L+GLCK    +   ++   +   G    +VTYN  I+G  K   
Sbjct: 216 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 275

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     IL  +   G A N +TYT ++       K +    +   M+ KG   D + Y +
Sbjct: 276 LGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 335

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + G +K A    ++M   G+     +Y  LI+  CK G++EAA +L++EM+ +G
Sbjct: 336 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 395

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            + +      LIDG C++G +  A RL +  M K G +S++ AYN I   L K  + D A
Sbjct: 396 IDLNPVIFNTLIDGYCESGMVDEALRLQV-VMEKKGLESDVFAYNSIASGLCKLNRKDEA 454

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +  SM  +    ++ ++++++   CK      A ++     + G          ++DG
Sbjct: 455 KGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDG 514

Query: 296 LRHSGCRREAKKIQSKIR 313
               G  +EA K++ ++ 
Sbjct: 515 YSKRGNMKEAHKLKDELE 532



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 41/265 (15%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P    FN +++G C++   D ALR+   ++K G   ++  YN +  GLCK  R   A
Sbjct: 397 DLNP--VIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEA 454

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +L  + + G +PN +++TT++                              YC     
Sbjct: 455 KGLLFSMVERGVSPNTMSFTTLIDI----------------------------YC----- 481

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G   EA     +M   G   +I++YN LI+ Y K G ++ A+ L DE+E +G   D
Sbjct: 482 --KEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 539

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT T LI G C  G +  A    + M + G   N+  Y  ++  L KDG+ + A  +++
Sbjct: 540 VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYD 599

Query: 245 SME----VKDSFTYSSMVHNLCKAK 265
            M+      D   YSS+V +L  A+
Sbjct: 600 EMKETGLTPDDTVYSSLVGSLHSAE 624



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 82/157 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P T +F  +++  CK      A R+FR +++ G VP ++TYN+LI G  K G 
Sbjct: 461 MVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGN 520

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +  EL + G  P+  T T+++     + K  + L++   M ++G   +   Y  
Sbjct: 521 MKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTA 580

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           +I+   K GR +EA    ++M   G+  D   Y++L+
Sbjct: 581 MISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 617



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 39/256 (15%)

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           N+ +   LE    M++KG+  D       + A  + G++     +  +MV   V++ + S
Sbjct: 168 NKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYS 227

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
              +++  CK G +E    L+DE+  +G + +  T+   I+G  K  ++ G    L  M 
Sbjct: 228 LTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLME 287

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME------------------------- 247
           K G   N+  Y  ++      GKI+ A  +FE M                          
Sbjct: 288 KEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 347

Query: 248 --------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
                         +  + TY +++H +CKA ++ +A  L+      G+ +       ++
Sbjct: 348 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 407

Query: 294 DGLRHSGCRREAKKIQ 309
           DG   SG   EA ++Q
Sbjct: 408 DGYCESGMVDEALRLQ 423



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 39/170 (22%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--------------------------- 185
           ++ L  +Y        A    + MEK+GF  D+                           
Sbjct: 158 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMV 217

Query: 186 --------YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
                   Y+ TI++DGLCK G+++  R  ++ +   G  +N+  YN  ++   K   + 
Sbjct: 218 NLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLG 277

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
               +   ME +    +  TY+ ++H      ++  A +L     + G+ 
Sbjct: 278 GVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIE 327


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 52/327 (15%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ATF I+LNGLCKN  TD+AL+MF  + + G  P  + Y I++ GLC+A R      +
Sbjct: 199 PNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRL 258

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  SG  P++IT   ++    +  +      +L   +++GY     GY ++I    +
Sbjct: 259 LNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFR 318

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY- 186
             R  E  ++  +M   G++ D+V Y  LI  +C+ G ++ A  +L++M ++G   D Y 
Sbjct: 319 AKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYC 378

Query: 187 ----------------------------------THTILIDGLCKAGNIKGARLHLEYMN 212
                                             T+TILI G+C+ G +  AR     M 
Sbjct: 379 YNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQME 438

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-----------------VKDSFTYS 255
            +G   ++  +N ++D L K G+++ A ++F  ME                 V D+ +  
Sbjct: 439 NLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQ 498

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +MV  LC++  +  A KLL+    SGV
Sbjct: 499 TMVERLCESGLILKAYKLLMQLADSGV 525



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 128/298 (42%), Gaps = 19/298 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P    + I++ G C+    D AL M   + + G  P+   YN LIKG C  G 
Sbjct: 332 MFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGL 391

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +  E+  +   P + TYT ++    RN       +I + M+  G +     +  
Sbjct: 392 LDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNA 451

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQ--LDIVSYNTLINLYCKEGKLE 167
           +I    K G L+EA     +M           ++ G    +D  S  T++   C+ G + 
Sbjct: 452 LIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLIL 511

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            AY LL ++   G   D  T+ +LI+G CKA NI GA      +   G   +   Y  ++
Sbjct: 512 KAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLI 571

Query: 228 DRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL-----CKAKRLPSASKLLLSCLKS 280
           D   +  + + A  V + M VK+  T SS V+       C+  +L  A  L L  L+S
Sbjct: 572 DGFHRVDREEDAFRVLDQM-VKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRS 628



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 139/308 (45%), Gaps = 4/308 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF++++    K+   + A+  F  ++  G  P++ TYN ++  + +      A  +  
Sbjct: 131 PPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYN 190

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++    + PN  T+  ++    +N K    L++   M +KG   +   Y  +++   +  
Sbjct: 191 QMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAK 250

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R  +    +  M   G   D ++ N L++ +CK G+++ A+ LL   EK+G+      ++
Sbjct: 251 RTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYS 310

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LIDGL +A      +     M K G + ++  Y  ++    + G +D+A+N+   M  +
Sbjct: 311 SLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQR 370

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D++ Y++++   C    L  A  L L   K+           ++ G+  +G   EA
Sbjct: 371 GLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEA 430

Query: 306 KKIQSKIR 313
           ++I +++ 
Sbjct: 431 RQIFNQME 438



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 131/321 (40%), Gaps = 82/321 (25%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P + T+ I++ G+C+N   D A ++F  ++  G  P ++T+N LI GLCKAG L  A
Sbjct: 406 DCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEA 465

Query: 65  RWI------------------------------------------------LKELGDSGH 76
           R +                                                L +L DSG 
Sbjct: 466 RHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGV 525

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
            P+ +TY  ++    + +      ++   ++ KG++ D   Y T+I  F ++ R ++A  
Sbjct: 526 VPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFR 585

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL----------------------- 173
            ++QMV +G       Y  L+   C++GKL  A+ L                        
Sbjct: 586 VLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFE 645

Query: 174 -DEMEK-------QGFECDKY---THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
             E+EK         F+ + +    +TI + GLC+A   + A      + +   D N  +
Sbjct: 646 KGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPS 705

Query: 223 YNCIVDRLGKDGKIDHAINVF 243
              +++ L KDG ++ A+++F
Sbjct: 706 CVMLINGLCKDGNLEMAVDIF 726



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 132/306 (43%), Gaps = 4/306 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T N++++ L K+   D   ++   L+         T+++LI    K+G    A     +
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D G  P+  TY +I+    +   + L L + + M +  Y  +   +  ++    K G+
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             +A    ++M   G+  + + Y  +++  C+  + +  + LL+ M+  G   D  T   
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN----VFESM 246
           L+DG CK G I  A   L+   K G+   ++ Y+ ++D L +  + D        +F++ 
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAG 336

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D   Y+ ++   C+   +  A  +L    + G+        A++ G    G   +A+
Sbjct: 337 IEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKAR 396

Query: 307 KIQSKI 312
            +Q +I
Sbjct: 397 SLQLEI 402



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 1/241 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N+++NG CK +  + A ++FR LQ  G  P+ VTY  LI G  +  R   A 
Sbjct: 525 VVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAF 584

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++  +G  P++  Y  +M    R  K  +   +     R   + +          F
Sbjct: 585 RVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHF 644

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L++A   + +M       +I  Y   +   C+  + E A  +   +++   + + 
Sbjct: 645 EK-GELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNP 703

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  +LI+GLCK GN++ A     Y  + GF       N ++  L    K+ HA+++   
Sbjct: 704 PSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNR 763

Query: 246 M 246
           M
Sbjct: 764 M 764


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 162/382 (42%), Gaps = 74/382 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T NIM++ LCK +  D A  +F GL      P+ VT+  LI GL + G++  A 
Sbjct: 442 LFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAY 501

Query: 66  WILKELGDSGHAPNAITYTTI-----------------------------------MKCC 90
            + +++ DSG  PNA+ YT++                                   M C 
Sbjct: 502 MLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCV 561

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           F+  + + G  +   +K +G T D   Y  +I   VK G  K+      +M   G+ LD 
Sbjct: 562 FKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDT 621

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT----------------------- 187
            +YN +I+ +CK GK+  AY LL+EM+ +G +    T                       
Sbjct: 622 RAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEE 681

Query: 188 ------------HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
                       ++ LIDG  K G I  A L LE + + G   N   +NC++D L K  +
Sbjct: 682 AKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEE 741

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           ID A+  F++M+      +  TYS MV+ LCK ++   A        K G++        
Sbjct: 742 IDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTT 801

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           ++ GL   G   EAK +  + +
Sbjct: 802 MISGLARVGNVLEAKDLFERFK 823



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 128/285 (44%), Gaps = 35/285 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   +++I+++GL K  ++ +  ++F  +++ G   +   YNI+I G CK+G++  A 
Sbjct: 582 LTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAY 641

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+   G  P  +TY +++    +  +      +    K K    +   Y ++I  F
Sbjct: 642 QLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGF 701

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDI----------------------------------- 150
            K+GR+ EA   +E+++  G+  +                                    
Sbjct: 702 GKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNE 761

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V+Y+ ++N  CK  K   A++   EM+KQG + +  T+T +I GL + GN+  A+   E 
Sbjct: 762 VTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFER 821

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYS 255
               G   +   YN +++ L    K   A  +FE   +K    YS
Sbjct: 822 FKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYS 866



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 42/273 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  M+  LCK    D A+ +F  L  +  VP +  YN +I G    G+   A 
Sbjct: 303 LVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAY 362

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+     G  P+ I Y  I+ C  R  K +  L IL AMK                  
Sbjct: 363 SLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAP------------- 409

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                                  ++ SYN LI++ CK G+LEAA  + D M++ G   + 
Sbjct: 410 -----------------------NLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNI 446

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            T  I+ID LCKA  +  A  + L   +K+    ++  +  ++D LG+ GK++ A  ++E
Sbjct: 447 ITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSV-TFCSLIDGLGRHGKVNDAYMLYE 505

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
            M    +  ++  Y+S++ N  K  R     K+
Sbjct: 506 KMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKI 538



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 129/278 (46%), Gaps = 3/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   M+    K+R    A  +   ++K  F P    Y  LI  L  A        +
Sbjct: 165 PSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTL 224

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ + G+      +TT++    R  +    L +L  MK   +  D   Y   I  F K
Sbjct: 225 LRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGK 284

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G++  A  +  ++ + G+  D V++ ++I + CK  +++ A  L +E++        Y 
Sbjct: 285 VGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYA 344

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I G    G    A   LE   + G   ++ AYNCI+  LG+ GK++ A+ + E+M+
Sbjct: 345 YNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMK 404

Query: 248 VKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +  +    +Y+ ++  LCKA  L +A K+  S  ++G+
Sbjct: 405 MDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGL 442



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 9/293 (3%)

Query: 29  ALRMFRGLQ---KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           AL  FR ++   K    PE   YN L+  + +   L     IL+E+  +G  P+  T   
Sbjct: 115 ALHYFRWVERKTKQLHSPE--AYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIE 172

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    ++RK +    ++  M++  +      Y T+I A             + QM   G
Sbjct: 173 MVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIG 232

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            ++ +  + TLI ++ +EG+++AA  LLDEM+   F  D   + + ID   K G +  A 
Sbjct: 233 YEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAW 292

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNL 261
                +   G   +   +  ++  L K  ++D A+ +FE ++   S    + Y++M+   
Sbjct: 293 KFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGY 352

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
               +   A  LL    + G      A   ++  L   G   EA +I   ++M
Sbjct: 353 GSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKM 405



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 87/203 (42%), Gaps = 39/203 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP T T+N +L+ L K    D AL  F+ ++     P  VTY+I++ GLCK  +   A 
Sbjct: 722 LTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAF 781

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+   G  PN ITYTT+                                   I+  
Sbjct: 782 VFWQEMQKQGLKPNTITYTTM-----------------------------------ISGL 806

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++G + EA D  E+  + G   D   YN +I       K   AY+L +E   +G  C  
Sbjct: 807 ARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKG--CRI 864

Query: 186 YTHT--ILIDGLCKAGNIKGARL 206
           Y+ T  +L+D L KA  ++ A +
Sbjct: 865 YSKTCVVLLDALHKADCLEQAAI 887


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 139/273 (50%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  ++NGLCK      AL +F  +   G  P++ TY  +I GLCK G    A 
Sbjct: 157 LQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAA 216

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++K++G+ G  P+ +TY+T++    ++R     L+I S MK KG +     Y ++I   
Sbjct: 217 GLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGL 276

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               R KEA+  + +M +  +  DIV+++ LI+++CKEG +  A  +L  M + G E + 
Sbjct: 277 CSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNV 336

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+ G      +  AR   + M   G   ++ +Y+ +++      +ID A  +F  
Sbjct: 337 ITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNE 396

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M       ++ +Y++++H  C+  +L  A +L 
Sbjct: 397 MIHQGLTPNTVSYTTLIHAFCQLGKLREARELF 429



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P T T NI++N  C  ++ D    +   + K G  P ++T+  LI GLCKAG    A 
Sbjct: 122 LSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQAL 181

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  P+  TYTTI+    +  +      ++  M   G   D   Y T+I + 
Sbjct: 182 ELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSL 241

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   + EA D    M   G+   +VSY +LI   C   + + A  +L+EM       D 
Sbjct: 242 CKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDI 301

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T ++LID  CK GN+  A+  L+ M ++G + N+  YN ++       ++  A  +F+ 
Sbjct: 302 VTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDV 361

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D F+YS +++  C  KR+  A +L    +  G+     +   ++      G 
Sbjct: 362 MITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGK 421

Query: 302 RREAKKI 308
            REA+++
Sbjct: 422 LREAREL 428



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 144/314 (45%), Gaps = 51/314 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   ++  ++ GLC       A  M   +     +P++VT+++LI   CK G +  A+
Sbjct: 262 ISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQ 321

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA-------------------- 105
            +LK + + G  PN ITY ++M        Y L +E++ A                    
Sbjct: 322 GVLKTMTEMGVEPNVITYNSLM------HGYSLQMEVVEARKLFDVMITRGCKPDVFSYS 375

Query: 106 ---------------------MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
                                M  +G T +   Y T+I AF ++G+L+EA +  + M T+
Sbjct: 376 ILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTN 435

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G   D+ +Y+ L+  +CK+G L  A+ L   M+    + +   +TILID +CK+GN+  A
Sbjct: 436 GYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHA 495

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
           R     +   G   +++ Y  I++ L K+G +D A+  F  ME      + F+Y+ ++  
Sbjct: 496 RKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRG 555

Query: 261 LCKAKRLPSASKLL 274
             + K    A +L+
Sbjct: 556 FLQHKDESRAVQLI 569



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 147/302 (48%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++ LCK+R  + AL +F  ++  G  P +V+Y  LI+GLC   R + A  +
Sbjct: 229 PDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAM 288

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+ +T++ ++    +         +L  M   G   +   Y +++  +  
Sbjct: 289 LNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSL 348

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + EA    + M+T G + D+ SY+ LIN YC   +++ A  L +EM  QG   +  +
Sbjct: 349 QMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVS 408

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LI   C+ G ++ AR   + M+  G+  +L  Y+ +++   K G +  A  +F +M+
Sbjct: 409 YTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQ 468

Query: 248 ---VKDSFT-YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
              +K +   Y+ ++ ++CK+  L  A KL       G++        +++GL   G   
Sbjct: 469 GTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLD 528

Query: 304 EA 305
           EA
Sbjct: 529 EA 530



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 159/390 (40%), Gaps = 90/390 (23%)

Query: 1   MICGDLTPCTATFNIMLNG-----------------------------------LCKNRY 25
           M+     P   T+  ++NG                                   LCK+R 
Sbjct: 187 MVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRL 246

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGL------------------------------ 55
            + AL +F  ++  G  P +V+Y  LI+GL                              
Sbjct: 247 VNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSL 306

Query: 56  -----CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA----- 105
                CK G +  A+ +LK + + G  PN ITY ++M        Y L +E++ A     
Sbjct: 307 LIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLM------HGYSLQMEVVEARKLFD 360

Query: 106 -MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            M  +G   D F Y  +I  +  + R+ EA     +M+  G+  + VSY TLI+ +C+ G
Sbjct: 361 VMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLG 420

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           KL  A  L  +M   G+  D  T+++L++G CK G +  A      M       NL  Y 
Sbjct: 421 KLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYT 480

Query: 225 CIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++D + K G ++HA  +F  + V     D   Y+++++ LCK   L  A +      + 
Sbjct: 481 ILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEED 540

Query: 281 GVRILKSAQKAVVDG-LRHSGCRREAKKIQ 309
           G    + +   ++ G L+H   + E++ +Q
Sbjct: 541 GCPPNEFSYNVIIRGFLQH---KDESRAVQ 567



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 90/187 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   LTP T ++  +++  C+      A  +F+ +  +G++P+L TY++L++G CK G 
Sbjct: 397 MIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGY 456

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + + +  +   PN + YT ++    ++       ++ S +   G   D   Y T
Sbjct: 457 LGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTT 516

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L EA +   +M  DG   +  SYN +I  + +      A  L+ EM  +G
Sbjct: 517 IINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKG 576

Query: 181 FECDKYT 187
           F  D+ T
Sbjct: 577 FVADEGT 583



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 115/290 (39%), Gaps = 67/290 (23%)

Query: 24  RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL-KELGDSGHAPNAIT 82
           R  D+AL  F  +     +P ++ +N L+  + +  +   A   L K++  +G +PN  T
Sbjct: 69  RNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCT 128

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
              ++ C    +   LG                    +V+A  +K+G             
Sbjct: 129 LNILINCFCLMQHVDLGF-------------------SVLAKVIKLG------------- 156

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
              +Q  I+++ TLIN  CK G+   A  L D+M  +G + D YT+T +I+GLCK G   
Sbjct: 157 ---LQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETA 213

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLC 262
            A   ++ M ++G                                  D  TYS+++ +LC
Sbjct: 214 AAAGLIKKMGEVGCQP-------------------------------DVVTYSTLIDSLC 242

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           K + +  A  +       G+     +  +++ GL      +EA  + +++
Sbjct: 243 KDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEM 292



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 150 IVSYNTLINLYCKEGKL-EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           I+ +N L++   +  +  +A   L  +ME  G   +  T  ILI+  C   ++      L
Sbjct: 90  IIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVL 149

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             + K+G    +  +  +++ L K G+   A+ +F+ M  +    D +TY+++++ LCK 
Sbjct: 150 AKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKM 209

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
               +A+ L+    + G +        ++D L       EA  I S ++   IS
Sbjct: 210 GETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGIS 263


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 147/298 (49%), Gaps = 4/298 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           + L  L +    D+ LR FR +        + +  I++ GLCK G +   R ++ E+   
Sbjct: 199 VYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAK 258

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G   N +TY   ++  F+        EIL+ M+++G   +   Y  +I  F  IG+++EA
Sbjct: 259 GVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEA 318

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
               E+M   G++ D+  Y ++I+  C+ G ++ A +L DEM  +G     +T+  LI G
Sbjct: 319 QRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHG 378

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
           +CKAG ++ A++ +  M   G D N   +N ++D   + G +D A+ +   ME K    D
Sbjct: 379 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 438

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            F Y+S+   LCK  R   A  LL S ++ GV     +   ++D     G   EAK++
Sbjct: 439 VFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRV 496



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 144/343 (41%), Gaps = 39/343 (11%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+N  + G  K         +   ++K G    +VTY +LI G    G++  A+ + +
Sbjct: 264 VVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFE 323

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ + G   +   YT+I+ C  R+   K  L +   M  KG       Y  +I    K G
Sbjct: 324 EMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG 383

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH- 188
           +++ A   + +M   G+ L+ V +NTLI+ YC+ G ++ A  L   MEK+G E D + + 
Sbjct: 384 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 443

Query: 189 ----------------------------------TILIDGLCKAGNIKGARLHLEYMNKI 214
                                             T LID  CK GN   A+     M + 
Sbjct: 444 SIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEK 503

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G   N+  YN ++D   K G +  A  + + +E    + D +T +S++H  C   ++  A
Sbjct: 504 GNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMA 563

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            KL     + G+        A++ GL   G   EA K+  +++
Sbjct: 564 LKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMK 606



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 149/318 (46%), Gaps = 6/318 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+     +  I+L+GLCK    +   ++   +   G    +VTYN  I+G  K   
Sbjct: 220 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     IL  +   G A N +TYT ++       K +    +   M+ KG   D + Y +
Sbjct: 280 LGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 339

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + G +K A    ++M   G+     +Y  LI+  CK G++EAA +L++EM+ +G
Sbjct: 340 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 399

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            + +      LIDG C++G +  A RL +  M K G +S++ AYN I   L K  + D A
Sbjct: 400 IDLNPVIFNTLIDGYCESGMVDEALRLQV-VMEKKGLESDVFAYNSIASGLCKLNRKDEA 458

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +  SM  +    ++ ++++++   CK      A ++     + G          ++DG
Sbjct: 459 KGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDG 518

Query: 296 LRHSGCRREAKKIQSKIR 313
               G  +EA K++ ++ 
Sbjct: 519 YSKRGNMKEAHKLKDELE 536



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 121/264 (45%), Gaps = 41/264 (15%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P    FN +++G C++   D ALR+   ++K G   ++  YN +  GLCK  R   A
Sbjct: 401 DLNP--VIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEA 458

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +L  + + G +PN +++TT++                              YC     
Sbjct: 459 KGLLFSMVERGVSPNTMSFTTLIDI----------------------------YC----- 485

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G   EA     +M   G   +I++YN LI+ Y K G ++ A+ L DE+E +G   D
Sbjct: 486 --KEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 543

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT T LI G C  G +  A    + M + G   N+  Y  ++  L KDG+ + A  +++
Sbjct: 544 VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYD 603

Query: 245 SME----VKDSFTYSSMVHNLCKA 264
            M+      D   YSS+V +L  A
Sbjct: 604 EMKETGLTPDDTVYSSLVGSLHSA 627



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 82/157 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P T +F  +++  CK      A R+FR +++ G VP ++TYN+LI G  K G 
Sbjct: 465 MVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGN 524

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +  EL + G  P+  T T+++     + K  + L++   M ++G   +   Y  
Sbjct: 525 MKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTA 584

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           +I+   K GR +EA    ++M   G+  D   Y++L+
Sbjct: 585 MISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 621



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 39/256 (15%)

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           N+ +   LE    M++KG+  D       + A  + G++     +  +MV   V++ + S
Sbjct: 172 NKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYS 231

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
              +++  CK G +E    L+DE+  +G + +  T+   I+G  K  ++ G    L  M 
Sbjct: 232 LTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLME 291

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME------------------------- 247
           K G   N+  Y  ++      GKI+ A  +FE M                          
Sbjct: 292 KEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 351

Query: 248 --------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
                         +  + TY +++H +CKA ++ +A  L+      G+ +       ++
Sbjct: 352 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 411

Query: 294 DGLRHSGCRREAKKIQ 309
           DG   SG   EA ++Q
Sbjct: 412 DGYCESGMVDEALRLQ 427



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 39/170 (22%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--------------------------- 185
           ++ L  +Y        A    + MEK+GF  D+                           
Sbjct: 162 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMV 221

Query: 186 --------YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
                   Y+ TI++DGLCK G+++  R  ++ +   G  +N+  YN  ++   K   + 
Sbjct: 222 NLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLG 281

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
               +   ME +    +  TY+ ++H      ++  A +L     + G+ 
Sbjct: 282 GVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIE 331


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 149/317 (47%), Gaps = 5/317 (1%)

Query: 2   ICGDLT-PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           I G LT P    +N +++ LCK +    A  +F  +   G   ++VTY  LI G C A +
Sbjct: 190 IDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASK 249

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +L E+      PN  TY  ++    +  K K    +L+ M +     D   Y T
Sbjct: 250 LKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYST 309

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +  +  LK+A      M   GV  D+ SY  LIN +CK   ++ A  L  EM ++ 
Sbjct: 310 LMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKN 369

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T++ LIDGLCK+G I      ++ M   G  +N+  YN ++D L K+G +D AI
Sbjct: 370 MVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAI 429

Query: 241 NVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+ +     SFT++ ++  LCK  RL  A +     L  G  +       +++G 
Sbjct: 430 ALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGH 489

Query: 297 RHSGCRREAKKIQSKIR 313
              G   EA  + SK+ 
Sbjct: 490 CKQGLLEEALTMLSKME 506



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 109/192 (56%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   ++ I++NG CKN+  D AL +F+ + +   VP +VTY+ LI GLCK+GR+    
Sbjct: 335 VTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVW 394

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ D G   N ITY +++    +N      + + + MK +G     F +  ++   
Sbjct: 395 DLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGL 454

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRLK+A +  + ++T G  LD+  YN +IN +CK+G LE A  +L +ME+ G   + 
Sbjct: 455 CKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNA 514

Query: 186 YTHTILIDGLCK 197
            T  I+I+ L K
Sbjct: 515 VTFDIIINALFK 526



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TF  ++ GLC     + AL     L   G   + V+Y  LI G+CK G  R A  +
Sbjct: 127 PHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKL 186

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++++      PN   Y TI+    + +       + S M  KG + D   Y T+I  F  
Sbjct: 187 VRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCI 246

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +LKEA   + +MV   +  ++ +YN L++  CKEGK++ A  +L  M K   + D  T
Sbjct: 247 ASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVIT 306

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+DG      +K A+     M+ +G   ++ +Y  +++   K+  +D A+N+F+ M 
Sbjct: 307 YSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMH 366

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K+      TYSS++  LCK+ R+     L+      G+        +++DGL  +G   
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLD 426

Query: 304 EAKKIQSKIR 313
            A  + +K++
Sbjct: 427 RAIALFNKMK 436



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 138/278 (49%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI+++ LCK      A  +   + K    P+++TY+ L+ G      
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A+ +   +   G  P+  +YT ++    +N+     L +   M +K        Y +
Sbjct: 320 LKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+    D +++M   G+  ++++YN+LI+  CK G L+ A  L ++M+ QG
Sbjct: 380 LIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQG 439

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                +T TIL+DGLCK G +K A+   + +   G+  ++  YN +++   K G ++ A+
Sbjct: 440 IRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEAL 499

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +   ME    V ++ T+  +++ L K      A KLL
Sbjct: 500 TMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLL 537



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 138/285 (48%), Gaps = 12/285 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C   TP    FN +L+   K ++   A+ +   L+  G  P+L+T NILI   C  G+
Sbjct: 50  MLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQ 109

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +     +L ++   G+ P+ IT+TT++K  C + +  K  L     +  +G  FD   Y 
Sbjct: 110 ITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNK-ALHFHDKLLAQGIKFDQVSYG 168

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I    KIG  + A   + ++     + ++  YNT+I+  CK   +  AY L  EM  +
Sbjct: 169 TLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAK 228

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T+T LI G C A  +K A   L  M     + N+  YN +VD L K+GK+  A
Sbjct: 229 GISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEA 288

Query: 240 INVFESM----EVKDSFTYSS------MVHNLCKAKRLPSASKLL 274
            NV   M       D  TYS+      +V+ L KA+ + +A  L+
Sbjct: 289 KNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLM 333


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 153/312 (49%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++G+CK+     A  MF  +   G  P+ VTY  LI G CKAG ++ A 
Sbjct: 378 IVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAF 437

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TYT +     +N +  +  E+L  M RKG   + + Y T++   
Sbjct: 438 SVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGL 497

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            KIG +++    ME+M   G   D ++Y TL++ YCK G++  A+ LL  M  +  +   
Sbjct: 498 CKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTL 557

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  +L++G C +G ++     +E+M + G   N   +N ++ +      +     ++++
Sbjct: 558 VTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKA 617

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     + DS TY+ ++   CKA+ +  A  L    ++ G  +  +   A++ G      
Sbjct: 618 MHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKK 677

Query: 302 RREAKKIQSKIR 313
             EA+K+  ++R
Sbjct: 678 FVEARKLFEEMR 689



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 146/292 (50%), Gaps = 4/292 (1%)

Query: 21  CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80
           C+    D  L++   L+  G  P+   YN +I  LCK G +  A  +L+ +   G  P+ 
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN 347

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
           + YTT++    +        ++   M+RK    D   Y +VI    K G++ EA +   +
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           M+  G++ D V+Y  LI+ YCK G+++ A+ + ++M ++G   +  T+T L DGLCK G 
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSS 256
           I  A   L  M++ G   N+  YN IV+ L K G I+  + + E M++     D+ TY++
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           ++   CK   +  A +LL   L   ++        +++G   SG   + +++
Sbjct: 528 LMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERL 579



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 143/281 (50%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N ++  LCKN     A ++ RG++K G  P+ V Y  +I G CK G +  A 
Sbjct: 308 LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAAC 367

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+      P+ +TYT+++    ++ K     E+ + M  KG   D   Y  +I  +
Sbjct: 368 KLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGY 427

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +KEA     QMV  G+  ++V+Y  L +  CK G+++ A  LL EM ++G + + 
Sbjct: 428 CKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNV 487

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKIDHAINV 242
           YT+  +++GLCK GNI+     +E M+  GF  +   Y  ++D   ++G+  K    + +
Sbjct: 488 YTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRI 547

Query: 243 FESMEVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             +  ++ +  T++ +++  C +  L    +L+   L+ G+
Sbjct: 548 MLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGI 588



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 139/277 (50%), Gaps = 8/277 (2%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +C +   C    NI+L+ LC+      A  +   +   G  P++V+Y +++ G C+ G L
Sbjct: 238 VCWNTVSC----NIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGEL 293

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
                ++ EL   G  P+   Y  I+    +N +     ++L  M++ G   D   Y TV
Sbjct: 294 DKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTV 353

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I+ F K+G +  A    ++M    +  DIV+Y ++I+  CK GK+  A  + +EM  +G 
Sbjct: 354 ISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGL 413

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E D+ T+T LIDG CKAG +K A      M + G   N+  Y  + D L K+G+ID A  
Sbjct: 414 EPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANE 473

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           +   M  K    + +TY+++V+ LCK   +    KL+
Sbjct: 474 LLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLM 510



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 4/291 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+++F    + G     V+ NI++  LC+ G++R A  +L ++ D G+ P+ ++Y  ++ 
Sbjct: 226 AVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVS 285

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R  +    L+++  +K KG   D + Y  +I    K G + EA   +  M   GV  
Sbjct: 286 GYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFP 345

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D V Y T+I+ +CK G + AA  L DEM ++    D  T+T +I G+CK+G +  AR   
Sbjct: 346 DNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMF 405

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M   G + +   Y  ++D   K G++  A +V   M  K    +  TY+++   LCK 
Sbjct: 406 NEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKN 465

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
             +  A++LL    + G++        +V+GL   G   +  K+  ++ +A
Sbjct: 466 GEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLA 516



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 2/194 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+  +++  CK      A  + R +      P LVT+N+L+ G C +G L     +
Sbjct: 520 PDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERL 579

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ + + G  PNA T+ ++MK  C +N   +   EI  AM  +G   D   Y  +I    
Sbjct: 580 IEWMLEKGIMPNATTFNSLMKQYCIKN-NMRATTEIYKAMHDRGVMPDSNTYNILIKGHC 638

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K   +KEA    ++MV  G  +   +Y+ LI  + K  K   A  L +EM K G   +K 
Sbjct: 639 KARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKD 698

Query: 187 THTILIDGLCKAGN 200
            + I +D   + GN
Sbjct: 699 IYDIFVDVNYEEGN 712



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TFN+++NG C +   ++  R+   + + G +P   T+N L+K  C    
Sbjct: 548 MLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNN 607

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R    I K + D G  P++ TY  ++K   + R  K    +   M  KGY+     Y  
Sbjct: 608 MRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDA 667

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +I  F K  +  EA    E+M   G+  +   Y+  +++  +EG  E    L DE 
Sbjct: 668 LIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITLELCDEF 723


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 137/273 (50%), Gaps = 6/273 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P  ATF I+LNGLCKN  TD+AL+MF  + + G  P  + Y I++ GLC+A R      
Sbjct: 198 NPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHR 257

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +  SG  P++IT   ++    +  +      +L   +++GY     GY ++I    
Sbjct: 258 LLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLF 317

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  R  E  ++  +M   G++ D+V Y  LI  +C+ G ++ A  +L++M ++G   D Y
Sbjct: 318 RAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTY 377

Query: 187 THTILIDGLCKAGNIKGAR-LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  LI G C  G +  AR L LE      F ++   Y  ++  + ++G +D A  +F  
Sbjct: 378 CYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSC-TYTILICGMCRNGLLDEARQIFNQ 436

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ME         T+++++  LCKA  L  A  L 
Sbjct: 437 MENLGCSPSIMTFNALIDGLCKAGELEEARHLF 469



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 139/308 (45%), Gaps = 4/308 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF++++    K+   + A+  F  ++  G  P++ TYN ++  + +      A  +  
Sbjct: 131 PPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYN 190

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++    + PN  T+  ++    +N K    L++   M +KG   +   Y  +++   +  
Sbjct: 191 QMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAK 250

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R  +    +  M   G   D ++ N L++ +CK G+++ A+ LL   EK+G+      ++
Sbjct: 251 RTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYS 310

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LIDGL +A      +     M K G + ++  Y  ++    + G +D+A+N+   M  +
Sbjct: 311 SLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQR 370

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D++ Y++++   C    L  A  L L   K+           ++ G+  +G   EA
Sbjct: 371 GLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEA 430

Query: 306 KKIQSKIR 313
           ++I +++ 
Sbjct: 431 RQIFNQME 438



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 132/306 (43%), Gaps = 4/306 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T N++++ L K+   D   ++   L+         T+++LI    K+G    A     +
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D G  P+  TY +I+    +   + L L + + M +  Y  +   +  ++    K G+
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             +A    ++M   G+  + + Y  +++  C+  + +  + LL+ M+  G   D  T   
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN----VFESM 246
           L+DG CK G I  A   L+   K G+   ++ Y+ ++D L +  + D        +F++ 
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAG 336

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D   Y+ ++   C+   +  A  +L    + G+        A++ G    G   +A+
Sbjct: 337 IEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKAR 396

Query: 307 KIQSKI 312
            +Q +I
Sbjct: 397 SLQLEI 402



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 132/316 (41%), Gaps = 22/316 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P    + I++ G C+    D AL M   + + G  P+   YN LIKG C  G 
Sbjct: 332 MFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGL 391

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +  E+  +   P + TYT ++    RN       +I + M+  G +     +  
Sbjct: 392 LDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNA 451

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           +I    K G L+EA     +M           ++ G    + + N     + +  + E A
Sbjct: 452 LIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANG----FHRVDREEDA 507

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVD 228
           + +LD+M K G       +  L+   C+ G +  A  L L+Y+  +    + E      +
Sbjct: 508 FRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQED-ETLKLAEE 566

Query: 229 RLGKDGKIDHAINVFESMEVK-DSF---TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
              K G+++ A+     M  K ++F    Y+  +  LC+A+R   A K+ L   +  + +
Sbjct: 567 HFEK-GELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDV 625

Query: 285 LKSAQKAVVDGLRHSG 300
              +   +++GL   G
Sbjct: 626 NPPSCVMLINGLCKDG 641



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 43/285 (15%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            D  P + T+ I++ G+C+N   D A ++F  ++  G  P ++T+N LI GLCKAG L  
Sbjct: 405 NDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEE 464

Query: 64  ARW------------------------------------------ILKELGDSGHAPNAI 81
           AR                                           +L ++  +G  P++ 
Sbjct: 465 ARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSA 524

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
            Y  +M    R  K  +   +     R   + +          F K G L++A   + +M
Sbjct: 525 VYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEK-GELEKAVRCLLEM 583

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
                  +I  Y   +   C+  + E A  +   +++   + +  +  +LI+GLCK GN+
Sbjct: 584 NFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNL 643

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           + A     Y  + GF       N ++  L    K+ HA+++   M
Sbjct: 644 EMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRM 688


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 141/308 (45%), Gaps = 5/308 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA- 64
           L P    F  M+ GLCK      A  M   +   G+ P + T+  LI GLCK G    A 
Sbjct: 271 LEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAF 330

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R  LK +    H PN +TYT ++    R  K      +LS MK +G   +   Y T+I  
Sbjct: 331 RLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDG 390

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G  + A D M  M ++G   ++ +YN ++N  CK G+++ AY +L++  + G + D
Sbjct: 391 HCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPD 450

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           K+T+ IL+   CK  NI+ A      M KIG   ++ +Y  ++    ++ ++  +   FE
Sbjct: 451 KFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFE 510

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                  +  + TY+SM+   C+   L  A K        G         A++ GL    
Sbjct: 511 EAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQS 570

Query: 301 CRREAKKI 308
            R EA+ +
Sbjct: 571 KRDEARSL 578



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 40/318 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL---- 61
           L P T T N ++    +    + A  +F  +   G  P+ ++Y +++   CK G +    
Sbjct: 166 LVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEAD 225

Query: 62  -------------------------------RTARWILKELGDSGHAPNAITYTTIMKCC 90
                                            A W  + L D G  PN I +T +++  
Sbjct: 226 KWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGL 285

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV-TDGVQLD 149
            +    K   E+L  M  KG+  + + + ++I    K G  ++A     ++V ++  + +
Sbjct: 286 CKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPN 345

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +++Y  +I+ YC+E KL  A +LL  M++QG   +  T+T LIDG CKAGN + A   + 
Sbjct: 346 VLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMN 405

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV----FESMEVKDSFTYSSMVHNLCKAK 265
            M+  GF  NL  YN IV+ L K G++  A  +    F++    D FTY+ ++   CK +
Sbjct: 406 LMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQE 465

Query: 266 RLPSASKLLLSCLKSGVR 283
            +  A  L    LK G++
Sbjct: 466 NIRQALALFNKMLKIGIQ 483



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 19/292 (6%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY--TTI 86
           A+ M   +   G VP   T N +IK   + G +  A  + +E+   G  P++I+Y    +
Sbjct: 154 AVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVV 213

Query: 87  MKCCFRNRKYKLG--LE---ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           M C       K+G  LE    LS M  +G+  D   +  +I+ F   G    A  Y  ++
Sbjct: 214 MYC-------KIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRL 266

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
           V  G++ +++++  +I   CK G ++ A+ +L+EM  +G++ + YTHT LIDGLCK G  
Sbjct: 267 VDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWT 326

Query: 202 KGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSS 256
           + A RL L+ +       N+  Y  ++    ++ K++ A  +   M+    V ++ TY++
Sbjct: 327 EKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTT 386

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           ++   CKA     A  L+      G         A+V+GL   G  +EA K+
Sbjct: 387 LIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKM 438



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 115/239 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  M++G C+    + A  +   +++ G VP   TY  LI G CKAG    A  +
Sbjct: 344 PNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDL 403

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G +PN  TY  I+    +  + +   ++L    + G   D F Y  +++   K
Sbjct: 404 MNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCK 463

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              +++A     +M+  G+Q DI SY TLI ++C+E +++ + +  +E  + G      T
Sbjct: 464 QENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKT 523

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +T +I G C+ GN+  A      ++  G   +   Y  I+  L K  K D A ++++SM
Sbjct: 524 YTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSM 582



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 39/199 (19%)

Query: 121 VIAAFVKIGRLKEATDYM-----------------------------------EQMVTDG 145
           ++ +F ++GRLKEA + +                                   E+M   G
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRG 200

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           VQ D +SY  ++ +YCK G +  A   L  M ++GF  D  T T++I      G    A 
Sbjct: 201 VQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRAL 260

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
            +   +  +G + NL  + C+++ L K G I  A  + E M  K    + +T++S++  L
Sbjct: 261 WYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGL 320

Query: 262 CKAKRLPSASKLLLSCLKS 280
           CK      A +L L  ++S
Sbjct: 321 CKKGWTEKAFRLFLKLVRS 339



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 68/157 (43%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+++  CK      AL +F  + K G  P++ +Y  LI   C+  R++ + 
Sbjct: 447 LKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESE 506

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E    G  P   TYT+++    R     L ++    +   G   D   Y  +I+  
Sbjct: 507 MFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGL 566

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
            K  +  EA    + M+  G+    V+  TL   YCK
Sbjct: 567 CKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYCK 603


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 149/306 (48%), Gaps = 4/306 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+  M++G C     +NA+++   +   G       Y  +I  LC  G++  A  
Sbjct: 284 PPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALR 343

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+++   G A +A+ +TT++              +   M+++G   D   +  +I    
Sbjct: 344 VLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLC 403

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G LKEA   +++MV  G+ +D+V+Y  LI+ YCK G +  A+ + +EM  +    +  
Sbjct: 404 RAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVV 463

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L DGLCK G+++ A   L  M   G + N+  YN +++ L K G ++ A+ +   M
Sbjct: 464 TYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEM 523

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           E      D +TY++++  LCK+     A  +L   L  G++   +    +++G   SG  
Sbjct: 524 EAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRV 583

Query: 303 REAKKI 308
              KK+
Sbjct: 584 EGGKKL 589



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 159/315 (50%), Gaps = 17/315 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   + N +L+ L      D A+ +FR L        + ++NIL+K L  AGRL+ A 
Sbjct: 224 LSPSPESCNAVLSRLP----LDEAIALFRELPDKN----VCSHNILLKALLSAGRLKDAC 275

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
               E+      P+ +TY T++   C R  + +  +++L  M  KG   +   Y +VIA 
Sbjct: 276 QHFDEMSS---PPDVVTYGTMVHGYCVRG-ELENAVKLLDEMAAKGLESNATVYTSVIAL 331

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G++ +A   +E M   GV LD V + T+I+ +C +G L AA  L +EM+K+G   D
Sbjct: 332 LCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAAD 391

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           + THT LI+GLC+AG +K A   L+ M   G D ++  Y  ++D   K G +  A  V  
Sbjct: 392 RVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHN 451

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       +  TY+++   LCK   + +A++LL      G+ +      ++++GL   G
Sbjct: 452 EMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFG 511

Query: 301 CRREAKKIQSKIRMA 315
              +A +I +++  A
Sbjct: 512 NLEQAMRIMTEMEAA 526



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 133/268 (49%), Gaps = 4/268 (1%)

Query: 20  LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           LC      +ALR+   +  HG   + V +  +I G C  G L  AR + +E+   G A +
Sbjct: 332 LCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAAD 391

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            +T+T ++    R  + K    +L  M  KG   D   Y  +I  + K G + EA     
Sbjct: 392 RVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHN 451

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           +MV   V  ++V+Y  L +  CK+G + AA  LL EM  +G E + YT+  LI+GLCK G
Sbjct: 452 EMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFG 511

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDSF-TYS 255
           N++ A   +  M   G  +++  Y  ++D L K G+ D A N+ + M    +K S  TY+
Sbjct: 512 NLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYN 571

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +++  C + R+    KLL   L+  VR
Sbjct: 572 VLMNGFCMSGRVEGGKKLLEWMLEKNVR 599



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 155/340 (45%), Gaps = 39/340 (11%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F  +++G C       A R+F  +QK G   + VT+  LI GLC+AG L+ A  +L+E+ 
Sbjct: 360 FTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMV 419

Query: 73  DSG---------------------------H--------APNAITYTTIMKCCFRNRKYK 97
           D G                           H        APN +TYT +     +    +
Sbjct: 420 DKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVR 479

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
              E+L  M  KG   + + Y ++I    K G L++A   M +M   G + D+ +Y TLI
Sbjct: 480 AANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLI 539

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +  CK G+ + A+ +L EM  +G +    T+ +L++G C +G ++G +  LE+M +    
Sbjct: 540 DTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVR 599

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKL 273
            N+  YN ++ +   D  +     +++ M  ++      TY+ ++   CKA+ +  A   
Sbjct: 600 PNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYF 659

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
               ++ G+R+  S+  A++  L       EA+    K+R
Sbjct: 660 HQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMR 699



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 115/246 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  + +GLCK      A  +   +   G    + TYN LI GLCK G 
Sbjct: 453 MVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGN 512

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  I+ E+  +GH  +  TYTT++    ++ ++     +L  M  KG       Y  
Sbjct: 513 LEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNV 572

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   GR++     +E M+   V+ ++V+YN+L+  YC +  +++   +   M  Q 
Sbjct: 573 LMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQE 632

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++ T+ ILI G CKA N+K A    + M + G      +Y+ ++  L K  K   A 
Sbjct: 633 VAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEAR 692

Query: 241 NVFESM 246
             F+ M
Sbjct: 693 VFFDKM 698



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 90/182 (49%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++ LCK+   D A  M + +   G  P + TYN+L+ G C +GR+   + +L+ +
Sbjct: 534 TYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWM 593

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +    PN +TY ++MK    ++  K   EI   M  +    +   Y  +I    K   +
Sbjct: 594 LEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNM 653

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           KEA  + ++M+  G++L   SY+ LI L  K+ K   A +  D+M  +G   +   ++  
Sbjct: 654 KEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFY 713

Query: 192 ID 193
           +D
Sbjct: 714 MD 715



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 79/176 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  AT+N+++NG C +   +   ++   + +    P +VTYN L+K  C    
Sbjct: 558 MLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKN 617

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +++   I K +     APN  TY  ++K   + R  K  L     M  KG       Y  
Sbjct: 618 MKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSA 677

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +I    K  +  EA  + ++M  +G+  +   Y+  +++   E  LE+   L DE+
Sbjct: 678 LIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDEL 733


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   +FN +L G C+      A  +F  L+    VP ++TYN LI GLC  G 
Sbjct: 346 MLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + KE+ D G  P+  TYT ++  CF+     +     + M  KG   D F Y T
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I   +KI     A    E+M+  G   D+++YN  ++  C++G  E A  LL+ M   G
Sbjct: 466 RIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG 525

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+T +I+G  K G+++ AR     M   G   ++  Y  ++        +D A 
Sbjct: 526 LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAF 585

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             F  M  K    +  TY+++++ LC  +R+  A K      + G+   K +   +++  
Sbjct: 586 MYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINES 645

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
            + G   EA ++  ++   KI 
Sbjct: 646 CNMGYWEEALRLYREMLDRKIQ 667



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 153/346 (44%), Gaps = 39/346 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ML+  CK    D AL +   +Q+ G  P  VTYN+L+ GL K G L  A+
Sbjct: 211 IKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAK 270

Query: 66  WILKELGDSGHAPNAITYTTIMK---------------------------CCFRNRKYKL 98
            +++E+ +SG   +A TY  ++                              +    Y L
Sbjct: 271 GLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGL 330

Query: 99  -------GLEI-LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                  G+ +  S M +  +T D   + +++  + + G + EA    +++    +   +
Sbjct: 331 CKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTV 390

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++YNTLI+  C  G L+AA  L  EM  QG   D +T+TIL++G  K G +  AR     
Sbjct: 391 ITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNE 450

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M   G   +  AYN  +    K      A ++ E M       D  TY+  VH LC+   
Sbjct: 451 MLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGN 510

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
              A  LL + +  G+        ++++G   +G  R+A+++ +++
Sbjct: 511 FEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEM 556



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 30  LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
           L +F  + ++G +P++   N +++ L     L  A+ +   +   G  P  +TY T++  
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             +  +    LE+LS M+ +G   +   Y  ++    K G L++A   +E+M+  G+ + 
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
             +YN LIN +C++G    A+ L++EM  +       T+  L+ GLCK   + G RL   
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFS 344

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAK 265
            M K  F  ++ ++N ++    + G I  A  +F+ ++ +D      TY++++H LC   
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 266 RLPSASKL 273
            L +A +L
Sbjct: 405 YLDAALRL 412



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 87/195 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+N+ ++ LC+    + A  +   +   G +P+ VTY  +I G  K G 
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGH 545

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR AR +  E+   G AP+ +TYT ++      +   L     S M  K    +   Y  
Sbjct: 546 LRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNA 605

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I       R+ EA  Y ++M   G+  +  SY  LIN  C  G  E A  L  EM  + 
Sbjct: 606 IINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRK 665

Query: 181 FECDKYTHTILIDGL 195
            + D +TH++ +  L
Sbjct: 666 IQPDSFTHSVFLKNL 680



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++NGLC  R  D A + F  +++ G +P   +Y ILI   C  G    A  + +E+
Sbjct: 602 TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREM 661

Query: 72  GDSGHAPNAITYTTIMKCCFRNRK 95
            D    P++ T++  +K   R+ +
Sbjct: 662 LDRKIQPDSFTHSVFLKNLHRDYQ 685


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 153/306 (50%), Gaps = 6/306 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++I+++ LCK+   D+AL +F  ++  G   ++VTY+ LI GLC  G+      +L+E+ 
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                P+ +T++ ++    +  K     E+ + M  +G   D   Y ++I  F K   L 
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 367

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA    + MV+ G + DIV+Y+ LIN YCK  +++    L  E+  +G   +  T+  L+
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
            G C++G +  A+   + M   G   ++  Y  ++D L  +G+++ A+ +FE M+ K   
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ-KSRM 486

Query: 253 T-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           T     Y+ ++H +C A ++  A  L  S    GV+        ++ GL   G   EA  
Sbjct: 487 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADM 546

Query: 308 IQSKIR 313
           +  K++
Sbjct: 547 LFRKMK 552



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 156/315 (49%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + ++NGLC       AL +   + ++GF P+ VTY  ++  LCK+G    A  +
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++ +     + + Y+ ++    ++  +   L + + M+ KG   D   Y ++I     
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 292

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +    + +M+   +  D+V+++ LI+++ KEGKL  A  L +EM  +G   D  T
Sbjct: 293 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LIDG CK   +  A    + M   G + ++  Y+ +++   K  ++D  + +F  + 
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + ++ TY+++V   C++ +L +A +L    +  GV         ++DGL  +G   
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472

Query: 304 EAKKIQSKIRMAKIS 318
           +A +I  K++ ++++
Sbjct: 473 KALEIFEKMQKSRMT 487



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 146/299 (48%), Gaps = 5/299 (1%)

Query: 18  NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           NG+   +  D A+ +F  + +   +P  + +N L   + +  +        K +  +G  
Sbjct: 44  NGIVDIKVND-AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIE 102

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
            +  T T ++ C  R +K      +L    + GY  D   + T++  F   GR+ EA   
Sbjct: 103 HDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVAL 162

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           +++MV    + D+V+ +TLIN  C +G++  A +L+D M + GF+ D+ T+  +++ LCK
Sbjct: 163 VDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCK 222

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
           +GN   A      M +    +++  Y+ ++D L KDG  D A+++F  ME+K    D  T
Sbjct: 223 SGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 282

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           YSS++  LC   +    +K+L   +   +        A++D     G   EAK++ +++
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 7/281 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P T T+N +++G CK      A +MF  +   G  P++VTY+ILI   CKA R
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +E+   G  PN ITY T++    ++ K     E+   M  +G       Y  
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G L +A +  E+M    + L I  YN +I+  C   K++ A+ L   +  +G
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV-DRLGKDGKIDHA 239
            + D  T+ ++I GLCK G++  A +    M + G   +   YN ++   LG  G I  +
Sbjct: 521 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLI-SS 579

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLS 276
           + + E M+V     DS T   MV ++   +RL  +   +LS
Sbjct: 580 VELIEEMKVCGFSADSSTI-KMVIDMLSDRRLDKSFLDMLS 619



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TF+ +++   K      A  ++  +   G  P+ +TYN LI G CK   
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 365

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +   +   G  P+ +TY+ ++    + ++   G+ +   +  KG   +   Y T
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G+L  A +  ++MV+ GV   +V+Y  L++  C  G+L  A  + ++M+K  
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  + I+I G+C A  +  A      ++  G   ++  YN ++  L K G +  A 
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEAD 545

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+      D FTY+ ++        L S+ +L+      G     S  K V+D L
Sbjct: 546 MLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 605



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 131/269 (48%), Gaps = 8/269 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T  IM+N  C+ +    A  +     K G+ P+ +T++ L+ G C  GR+  A  ++  +
Sbjct: 107 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 166

Query: 72  GDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            +    P+ +T +T++   C + R  +  L ++  M   G+  D   Y  V+    K G 
Sbjct: 167 VEMKQRPDLVTVSTLINGLCLKGRVSE-ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
              A D   +M    ++  +V Y+ +I+  CK+G  + A  L +EME +G + D  T++ 
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 285

Query: 191 LIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           LI GLC  G    GA++  E + +     ++  ++ ++D   K+GK+  A  ++  M  +
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGR-NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR 344

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLL 274
               D+ TY+S++   CK   L  A+++ 
Sbjct: 345 GIAPDTITYNSLIDGFCKENCLHEANQMF 373


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 153/306 (50%), Gaps = 6/306 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++I+++ LCK+   D+AL +F  ++  G   ++VTY+ LI GLC  G+      +L+E+ 
Sbjct: 277 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 336

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                P+ +T++ ++    +  K     E+ + M  +G   D   Y ++I  F K   L 
Sbjct: 337 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 396

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA    + MV+ G + DIV+Y+ LIN YCK  +++    L  E+  +G   +  T+  L+
Sbjct: 397 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
            G C++G +  A+   + M   G   ++  Y  ++D L  +G+++ A+ +FE M+ K   
Sbjct: 457 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ-KSRM 515

Query: 253 T-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           T     Y+ ++H +C A ++  A  L  S    GV+        ++ GL   G   EA  
Sbjct: 516 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADM 575

Query: 308 IQSKIR 313
           +  K++
Sbjct: 576 LFRKMK 581



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 156/315 (49%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + ++NGLC       AL +   + ++GF P+ VTY  ++  LCK+G    A  +
Sbjct: 202 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 261

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++ +     + + Y+ ++    ++  +   L + + M+ KG   D   Y ++I     
Sbjct: 262 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 321

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +    + +M+   +  D+V+++ LI+++ KEGKL  A  L +EM  +G   D  T
Sbjct: 322 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 381

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LIDG CK   +  A    + M   G + ++  Y+ +++   K  ++D  + +F  + 
Sbjct: 382 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 441

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + ++ TY+++V   C++ +L +A +L    +  GV         ++DGL  +G   
Sbjct: 442 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 501

Query: 304 EAKKIQSKIRMAKIS 318
           +A +I  K++ ++++
Sbjct: 502 KALEIFEKMQKSRMT 516



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 146/299 (48%), Gaps = 5/299 (1%)

Query: 18  NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           NG+   +  D A+ +F  + +   +P  + +N L   + +  +        K +  +G  
Sbjct: 73  NGIVDIKVND-AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIE 131

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
            +  T T ++ C  R +K      +L    + GY  D   + T++  F   GR+ EA   
Sbjct: 132 HDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVAL 191

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           +++MV    + D+V+ +TLIN  C +G++  A +L+D M + GF+ D+ T+  +++ LCK
Sbjct: 192 VDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCK 251

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
           +GN   A      M +    +++  Y+ ++D L KDG  D A+++F  ME+K    D  T
Sbjct: 252 SGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 311

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           YSS++  LC   +    +K+L   +   +        A++D     G   EAK++ +++
Sbjct: 312 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 370



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 7/281 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P T T+N +++G CK      A +MF  +   G  P++VTY+ILI   CKA R
Sbjct: 370 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 429

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +E+   G  PN ITY T++    ++ K     E+   M  +G       Y  
Sbjct: 430 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 489

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G L +A +  E+M    + L I  YN +I+  C   K++ A+ L   +  +G
Sbjct: 490 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 549

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV-DRLGKDGKIDHA 239
            + D  T+ ++I GLCK G++  A +    M + G   +   YN ++   LG  G I  +
Sbjct: 550 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLI-SS 608

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLS 276
           + + E M+V     DS T   MV ++   +RL  +   +LS
Sbjct: 609 VELIEEMKVCGFSADSSTI-KMVIDMLSDRRLDKSFLDMLS 648



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TF+ +++   K      A  ++  +   G  P+ +TYN LI G CK   
Sbjct: 335 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 394

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +   +   G  P+ +TY+ ++    + ++   G+ +   +  KG   +   Y T
Sbjct: 395 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 454

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G+L  A +  ++MV+ GV   +V+Y  L++  C  G+L  A  + ++M+K  
Sbjct: 455 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 514

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  + I+I G+C A  +  A      ++  G   ++  YN ++  L K G +  A 
Sbjct: 515 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEAD 574

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+      D FTY+ ++        L S+ +L+      G     S  K V+D L
Sbjct: 575 MLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 634



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 131/269 (48%), Gaps = 8/269 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T  IM+N  C+ +    A  +     K G+ P+ +T++ L+ G C  GR+  A  ++  +
Sbjct: 136 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 195

Query: 72  GDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            +    P+ +T +T++   C + R  +  L ++  M   G+  D   Y  V+    K G 
Sbjct: 196 VEMKQRPDLVTVSTLINGLCLKGRVSE-ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 254

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
              A D   +M    ++  +V Y+ +I+  CK+G  + A  L +EME +G + D  T++ 
Sbjct: 255 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 314

Query: 191 LIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           LI GLC  G    GA++  E + +     ++  ++ ++D   K+GK+  A  ++  M  +
Sbjct: 315 LIGGLCNDGKWDDGAKMLREMIGR-NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR 373

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLL 274
               D+ TY+S++   CK   L  A+++ 
Sbjct: 374 GIAPDTITYNSLIDGFCKENCLHEANQMF 402


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 45/348 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L  CT TFNIML  LC       AL + R + +    P  VTYN +I G C  GR++ A 
Sbjct: 37  LPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAAL 92

Query: 66  WILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FDGFGYCTVIA 123
            I++E+ + G  APN  TY T++    +  +    +++   M  KG    +   Y  +I 
Sbjct: 93  DIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIG 152

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            +   G+L  A  Y ++MV  GV + + +YN L++    +G+   AY L++EM  +G   
Sbjct: 153 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAP 212

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG---------------------------F 216
           D +T+ ILI+G CK GN+K A    E M++ G                           F
Sbjct: 213 DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLF 272

Query: 217 D--------SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           D         +L  YN +++     G ID A  +   ME K    D  TY++++  LC  
Sbjct: 273 DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL 332

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            R+  A KL+    K G++        ++ G    G  ++A +I++++
Sbjct: 333 GRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM 380



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 143/297 (48%), Gaps = 4/297 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P    +N ++ G C     D AL     + + G    + TYN+L+  L   GR   
Sbjct: 138 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 197

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +++E+G  G AP+  TY  ++    +    K  LEI   M R+G       Y ++I 
Sbjct: 198 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIY 257

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  K G+++E     ++ V  G++ D+V YN LIN +   G ++ A+ ++ EMEK+    
Sbjct: 258 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 317

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  L+ GLC  G +  AR  ++ M K G   +L  YN ++      G +  A+ + 
Sbjct: 318 DDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIR 377

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             M  K       TY++++  LCK  +   A  ++   +++G+    S   ++++GL
Sbjct: 378 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 145/279 (51%), Gaps = 12/279 (4%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSA 105
           T+NI+++ LC AG+   A  +L+++      PNA+TY T++   C R R  +  L+I+  
Sbjct: 43  TFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGR-VQAALDIMRE 97

Query: 106 MK-RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKE 163
           M+ R G   + + Y TVI+ + K+GR+ EA    ++M+T G V+ + V YN LI  YC +
Sbjct: 98  MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 157

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
           GKL+ A L  D M ++G      T+ +L+  L   G    A   +E M   G   ++  Y
Sbjct: 158 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 217

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           N +++   K+G +  A+ +FE+M  +       TY+S+++ L K  ++    KL    ++
Sbjct: 218 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVR 277

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            G+R       A+++    SG    A +I  ++   +I+
Sbjct: 278 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 316


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 152/311 (48%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++NG  K      A R+F+ +     +P  VTYN LI G C  G    A 
Sbjct: 269 ISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQAL 328

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL+ +  +G  PN ++Y+ ++    R+ K++L   IL  M+  G       Y  +I   
Sbjct: 329 TILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGL 388

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L E+   +++M+ DGV  D+V+++ LIN +C+ GK++    ++ +M K G   + 
Sbjct: 389 CRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNS 448

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI   CK G++  A      M++IG+D+N    N +V  L KDGK+  A   F  
Sbjct: 449 IIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHH 508

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V +S T+  +++    +     A  +    +K+G          ++  L  +G 
Sbjct: 509 MSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGK 568

Query: 302 RREAKKIQSKI 312
            +EAK++  K+
Sbjct: 569 FKEAKRLLDKL 579



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 153/286 (53%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  +TFNI++N LC       A  + + +++ G+VP +VTYN ++   CK GR
Sbjct: 159 MLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGR 218

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  ++ ++G  G   +A TY  ++    +N +   G  +L  M+++  + +   Y +
Sbjct: 219 YKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNS 278

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  FVK G++  AT   ++M    +  + V+YN LI+ +C +G  E A  +L+ ME  G
Sbjct: 279 IINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATG 338

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + ++ +++ L++GLC+    + ++  LE M   G      AY  ++D L ++G ++ ++
Sbjct: 339 PKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESV 398

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + M     V D  T+S +++  C+  ++ +  +++    K+G+
Sbjct: 399 KLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGL 444



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 153/317 (48%), Gaps = 4/317 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T N++L  L K R        F+ +      P++ T+NILI  LC  G+L+ A 
Sbjct: 129 FNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAG 188

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++LK++ +SG+ P+ +TY T++    +  +YK  LE++  M  KG   D   Y  ++   
Sbjct: 189 YLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDL 248

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R  +    +++M    +  + ++YN++IN + KEGK+ AA  +  EM       + 
Sbjct: 249 CKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNC 308

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDG C  GN + A   LE M   G   N  +Y+ +++ L +  K + + ++ E 
Sbjct: 309 VTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILER 368

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     +     Y++M+  LC+   L  + KLL   LK GV         +++G    G 
Sbjct: 369 MRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGK 428

Query: 302 RREAKKIQSKIRMAKIS 318
            +  K+I  K+  A ++
Sbjct: 429 IKNVKEIICKMYKAGLA 445



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 135/274 (49%), Gaps = 4/274 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   T+N +++G C +   + AL +   ++  G  P  V+Y+ L+ GLC+  +   +
Sbjct: 303 NLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELS 362

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + IL+ +  +G     I YT ++    RN      +++L  M + G   D   +  +I  
Sbjct: 363 KSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLING 422

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F ++G++K   + + +M   G+  + + Y TLI  YCK G +  A+ +   M + G++ +
Sbjct: 423 FCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDAN 482

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +   +L+  LCK G +  A     +M+KIG   N   ++CI++  G  G    A ++F+
Sbjct: 483 CFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFD 542

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
            M         FTY  ++  LC+A +   A +LL
Sbjct: 543 EMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLL 576



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 127/275 (46%), Gaps = 6/275 (2%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N++++ LCK+     A   F  + K G VP  +T++ +I G   +G    A  +  E+  
Sbjct: 487 NVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIK 546

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           +GH P+  TY  ++K   R  K+K    +L  +       D   Y T++    K G L +
Sbjct: 547 AGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTD 606

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA-YLLLDEMEKQGFECDKYTHTILI 192
           A    ++MV   V  D  +Y  +     + GK+ AA +   + + K     +K  +T  +
Sbjct: 607 AVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFV 666

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EV 248
           DGL +AG  K A    E M K G  ++L A N I++   + GK+  A ++F  M     +
Sbjct: 667 DGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGITI 726

Query: 249 KDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             S  TY+ ++H   K K L   S L    +++G+
Sbjct: 727 SPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGI 761



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 151/321 (47%), Gaps = 17/321 (5%)

Query: 2    ICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 57
            +C DL       N++LNG  +     +  D    M+ G+      P L TYNIL+ G  K
Sbjct: 690  LCADLIAT----NVILNGYSRMGKMAKAGDIFTMMWSGIT---ISPSLATYNILLHGYAK 742

Query: 58   AGRLRTARWILKELGDSGHAPNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
               L     +   +  +G  P+ +T ++ I+  C ++    +GL++L  M   G   D  
Sbjct: 743  KKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFC-KSAMLDVGLKLLKKMLLDGVAVDQC 801

Query: 117  GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
             +  +I  + +   + +A D +  M    +  D+ +++++I++  +   ++ ++LLL EM
Sbjct: 802  TFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEM 861

Query: 177  EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             ++G   D+  +  L++ +C+ G+I GA    + M  +G  S   A + +V  L K GK+
Sbjct: 862  LERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKV 921

Query: 237  DHAINVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
            + A  V + M  K       T+++++H  C+ + L  A KL  +     V++   A   +
Sbjct: 922  EEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVL 981

Query: 293  VDGLRHSGCRREAKKIQSKIR 313
            + GL   G    A K+  +I+
Sbjct: 982  ISGLCADGDVASALKLYKEIK 1002



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 8/236 (3%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N   +  +++   R       LE    M  +G+    +    ++   VK  ++     + 
Sbjct: 97  NPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFF 156

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           ++M+   V  D+ ++N LIN+ C EGKL+ A  LL +ME+ G+     T+  +++  CK 
Sbjct: 157 KEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKK 216

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTY 254
           G  K A   ++ M   G +++   YN +VD L K+ +      + + M  +    +  TY
Sbjct: 217 GRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITY 276

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS--AQKAVVDGLRHSGCRREAKKI 308
           +S+++   K  ++ +A+++      S + +L +     A++DG  H G   +A  I
Sbjct: 277 NSIINGFVKEGKIGAATRIFQE--MSMLNLLPNCVTYNALIDGHCHDGNFEQALTI 330



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 97/219 (44%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            TFN+++   C+      A  +   +      P++ T++ +I  L +   ++ +  +L E+
Sbjct: 802  TFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEM 861

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             + G  P+   Y  ++    R        ++   M+  G +        ++    K G++
Sbjct: 862  LERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKV 921

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +EA   ++ M+   +   I ++ TL++++C+   L  A  L D M+    + D   + +L
Sbjct: 922  EEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVL 981

Query: 192  IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            I GLC  G++  A    + + + G   N+  Y  ++D +
Sbjct: 982  ISGLCADGDVASALKLYKEIKQRGLWPNMTTYCILIDAI 1020



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 46/93 (49%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+   L P  ATF  +++  C+N     AL++   +       +++ YN+LI GLC  G 
Sbjct: 931  MLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGD 990

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93
            + +A  + KE+   G  PN  TY  ++   F N
Sbjct: 991  VASALKLYKEIKQRGLWPNMTTYCILIDAIFTN 1023


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 147/306 (48%), Gaps = 4/306 (1%)

Query: 7    TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            TP   +++ ++NG C+    D   ++   +++ G  P    Y  +I  LC+  +L  A  
Sbjct: 721  TPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEE 780

Query: 67   ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
               E+   G  P+ + YTT++    +    +   +    M  +  T D   Y  +I+ F 
Sbjct: 781  AFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC 840

Query: 127  KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            +IG + EA     +M   G++ D V++  LIN YCK G ++ A+ + + M + G   +  
Sbjct: 841  QIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVV 900

Query: 187  THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            T+T LIDGLCK G++  A   L  M KIG   N+  YN IV+ L K G I+ A+ +    
Sbjct: 901  TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 960

Query: 247  EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            E      D+ TY++++   CK+  +  A ++L   L  G++        +++G    G  
Sbjct: 961  EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 1020

Query: 303  REAKKI 308
             + +K+
Sbjct: 1021 EDGEKL 1026



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 156/304 (51%), Gaps = 6/304 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            A++NI+++ +C+      A  +   ++  G+ P++++Y+ ++ G C+ G L     +++
Sbjct: 689 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 748

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  PN+  Y +I+    R  K     E  S M R+G   D   Y T+I  F K G
Sbjct: 749 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 808

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++ A+ +  +M +  +  D+++Y  +I+ +C+ G +  A  L  EM  +G E D  T T
Sbjct: 809 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 868

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
            LI+G CKAG++K A R+H  +M + G   N+  Y  ++D L K+G +D A  +   M  
Sbjct: 869 ELINGYCKAGHMKDAFRVH-NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 927

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                + FTY+S+V+ LCK+  +  A KL+     +G+         ++D    SG   +
Sbjct: 928 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 987

Query: 305 AKKI 308
           A++I
Sbjct: 988 AQEI 991



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 147/313 (46%), Gaps = 4/313 (1%)

Query: 5    DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
            D+TP   T+  +++G C+      A ++F  +   G  P+ VT+  LI G CKAG ++ A
Sbjct: 824  DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 883

Query: 65   RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
              +   +  +G +PN +TYTT++    +        E+L  M + G   + F Y +++  
Sbjct: 884  FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 943

Query: 125  FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
              K G ++EA   + +    G+  D V+Y TL++ YCK G+++ A  +L EM  +G +  
Sbjct: 944  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 1003

Query: 185  KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              T  +L++G C  G ++     L +M   G   N   +N +V +      +  A  +++
Sbjct: 1004 IVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYK 1063

Query: 245  SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             M  +    D  TY ++V   CKA+ +  A  L       G  +  S    ++ G     
Sbjct: 1064 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 1123

Query: 301  CRREAKKIQSKIR 313
               EA+++  ++R
Sbjct: 1124 KFLEAREVFDQMR 1136



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 142/298 (47%), Gaps = 8/298 (2%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M C  L P + TF  ++NG CK  +  +A R+   + + G  P +VTY  LI GLCK G 
Sbjct: 855  MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 914

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L +A  +L E+   G  PN  TY +I+    ++   +  ++++   +  G   D   Y T
Sbjct: 915  LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT 974

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++ A+ K G + +A + +++M+  G+Q  IV++N L+N +C  G LE    LL+ M  +G
Sbjct: 975  LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1034

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               +  T   L+   C   N+K A    + M   G   + + Y  +V    K   +  A 
Sbjct: 1035 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW 1094

Query: 241  NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
             +F+ M+ K       TYS ++    K K+   A ++     + G+    +A K + D
Sbjct: 1095 FLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL----AADKEIFD 1148



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 133/286 (46%), Gaps = 4/286 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI   + P T  +  +++G CK      A + F  +      P+++TY  +I G C+ G 
Sbjct: 785  MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 844

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  A  +  E+   G  P+++T+T ++    +    K    + + M + G + +   Y T
Sbjct: 845  MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 904

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I    K G L  A + + +M   G+Q +I +YN+++N  CK G +E A  L+ E E  G
Sbjct: 905  LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 964

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               D  T+T L+D  CK+G +  A+  L+ M   G    +  +N +++     G ++   
Sbjct: 965  LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1024

Query: 241  NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             +   M  K    ++ T++S+V   C    L +A+ +       GV
Sbjct: 1025 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGV 1070



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 116/241 (48%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P   T+N ++NGLCK+   + A+++    +  G   + VTY  L+   CK+G +  A+
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             ILKE+   G  P  +T+  +M     +   + G ++L+ M  KG   +   + +++  +
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                 LK AT   + M + GV  D  +Y  L+  +CK   ++ A+ L  EM+ +GF    
Sbjct: 1050 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 1109

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             T+++LI G  K      AR   + M + G  ++ E ++   D   K  + D  ++  + 
Sbjct: 1110 STYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDE 1169

Query: 246  M 246
            +
Sbjct: 1170 I 1170



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 142/344 (41%), Gaps = 40/344 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK-AGRLRTARWILKE 70
            F++    L        A R+F  +  +G V  + + N+ +  L K   +  TA  + +E
Sbjct: 620 VFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFRE 679

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
             + G   N  +Y  ++    +  + K    +L  M+ KGYT D   Y TV+  + + G 
Sbjct: 680 FPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGE 739

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L +    +E M   G++ +   Y ++I L C+  KL  A     EM +QG   D   +T 
Sbjct: 740 LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 799

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           LIDG CK G+I+ A      M+      ++  Y  I+    + G +  A  +F  M    
Sbjct: 800 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 859

Query: 247 -------------------EVKDSF----------------TYSSMVHNLCKAKRLPSAS 271
                               +KD+F                TY++++  LCK   L SA+
Sbjct: 860 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 919

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
           +LL    K G++       ++V+GL  SG   EA K+  +   A
Sbjct: 920 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 963



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 10/208 (4%)

Query: 111 YTFDGFG-----YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE-G 164
           YT+  +G     +       V  G L+EA    E+M+  G+ L + S N  +    K+  
Sbjct: 609 YTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCY 668

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K   A ++  E  + G   +  ++ I+I  +C+ G IK A   L  M   G+  ++ +Y+
Sbjct: 669 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 728

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +V+   + G++D    + E M+ K    +S+ Y S++  LC+  +L  A +     ++ 
Sbjct: 729 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 788

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKI 308
           G+         ++DG    G  R A K 
Sbjct: 789 GILPDTVVYTTLIDGFCKRGDIRAASKF 816


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 154/339 (45%), Gaps = 46/339 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T NI++  LCK    + AL     + + G  P+++TYN LI   CKAG +  A  +
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTL 441

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G   +  T  T++    + ++Y+   E+L +  ++G+  D   Y TV+AA+ K
Sbjct: 442 MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFK 501

Query: 128 -----------------------------------IGRLKEATDYMEQMVTDGVQLDIVS 152
                                              + RLKEA D + + V  G+  D  +
Sbjct: 502 EYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETT 561

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN +I+ YCKEG LE A+   ++M +  F+ D  T   L++GLC  G +  A    E   
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
           + G   ++  YN ++  + K G +D A++ F+ MEVK    D+FTY+ ++  L +A R  
Sbjct: 622 EKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSE 681

Query: 269 SASKLLLSCLKSG-------VRILKSAQKAVVDGLRHSG 300
            A  +L     SG         +LK +     D   H G
Sbjct: 682 EAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEG 720



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 5/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN++++  C      +AL     +Q  G  P+ VTYN L+   C+ G L  AR
Sbjct: 204 LHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 263

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +   G AP   TY T++    R    K   +++ +M   G+  D   Y  +    
Sbjct: 264 ALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGL 323

Query: 126 VKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            + G++ EA    ++M   G  L D+V+YNTL++   K      A  LL+EM  +G +  
Sbjct: 324 CQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPT 383

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             TH I++  LCK G ++ A   LE + + G   ++  YN ++D   K G +  A  + +
Sbjct: 384 LVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMD 443

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            M  K    D+FT +++++NLCK KR   A +LL S  + G
Sbjct: 444 EMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRG 484



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 141/327 (43%), Gaps = 40/327 (12%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T N +L  LCK +  ++A  +     + GFVP+ V+Y  ++    K      A  +  
Sbjct: 454 TFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWD 513

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++ +    P+  TY T++K   R  + K  ++ L+    KG   D   Y  +I A+ K G
Sbjct: 514 QMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEG 573

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L+ A  +  +MV +  + D+V+ NTL+N  C  GKL+ A  L +   ++G + D  T+ 
Sbjct: 574 DLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYN 633

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF----ES 245
            LI  +CK G++  A    + M   G   +   YN ++  L + G+ + A N+     +S
Sbjct: 634 TLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADS 693

Query: 246 MEVKDSF------------------------------------TYSSMVHNLCKAKRLPS 269
            ++  SF                                    TY   ++ LC   +L  
Sbjct: 694 GKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKE 753

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGL 296
           A  +L   ++ G+ +  S    +++GL
Sbjct: 754 AKAVLDEMMQKGMPVDCSTYITLMEGL 780



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 121/272 (44%), Gaps = 7/272 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P  +T+N ++ GLC+      A+       + G VP+  TYNI+I   CK G 
Sbjct: 515 MIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGD 574

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A     ++ ++   P+ +T  T+M     + K    L++  +   KG   D   Y T
Sbjct: 575 LENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNT 634

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K+G +  A  + + M   G+Q D  +YN +++   + G+ E A+ +L ++   G
Sbjct: 635 LIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694

Query: 181 FECDKYTHTILIDGLCKAGNIK--GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
                +   +L        ++K    +   E   K   D+ LE Y   ++ L   G++  
Sbjct: 695 KLSQSFACPLLKPSSADEADVKEHEGKPEAESSEK-AQDNALETYMERLNGLCTGGQLKE 753

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           A  V + M  K    D  TY +++  L K ++
Sbjct: 754 AKAVLDEMMQKGMPVDCSTYITLMEGLIKRQK 785



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 5/182 (2%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G L +A   +  M   G+  D V+YNTL+N +C++G L  A  LL  M++ G    + T+
Sbjct: 222 GTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTY 281

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             L+    + G IK A   +E M   GF+ +L  YN +   L + GK+D A  + + ME 
Sbjct: 282 NTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMER 341

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D  TY+++V    K +    A +LL      GV+        VV  L   G   
Sbjct: 342 LGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLE 401

Query: 304 EA 305
           EA
Sbjct: 402 EA 403


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   +FN +L G C+      A  +F  L+    VP ++TYN LI GLC  G 
Sbjct: 346 MLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + KE+ D G  P+  TYT ++  CF+     +     + M  KG   D F Y T
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I   +KI     A    E+M+  G   D+++YN  ++  C++G  E A  LL+ M   G
Sbjct: 466 RIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG 525

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+T +I+G  K G+++ AR     M   G   ++  Y  ++        +D A 
Sbjct: 526 LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAF 585

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             F  M  K    +  TY+++++ LC  +R+  A K      + G+   K +   +++  
Sbjct: 586 MYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINES 645

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
            + G   EA ++  ++   KI 
Sbjct: 646 CNMGYWEEALRLYREMLDRKIQ 667



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 153/346 (44%), Gaps = 39/346 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ML+  CK    D AL +   +Q+ G  P  VTYN+L+ GL K G L  A+
Sbjct: 211 IKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAK 270

Query: 66  WILKELGDSGHAPNAITYTTIMK---------------------------CCFRNRKYKL 98
            +++E+ +SG   +A TY  ++                              +    Y L
Sbjct: 271 GLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGL 330

Query: 99  -------GLEI-LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                  G+ +  S M +  +T D   + +++  + + G + EA    +++    +   +
Sbjct: 331 CKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTV 390

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++YNTLI+  C  G L+AA  L  EM  QG   D +T+TIL++G  K G +  AR     
Sbjct: 391 ITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNE 450

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M   G   +  AYN  +    K      A ++ E M       D  TY+  VH LC+   
Sbjct: 451 MLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGN 510

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
              A  LL + +  G+        ++++G   +G  R+A+++ +++
Sbjct: 511 FEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEM 556



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 30  LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
           L +F  + ++G +P++   N +++ L     L  A+ +   +   G  P  +TY T++  
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             +  +    LE+LS M+ +G   +   Y  ++    K G L++A   +E+M+  G+ + 
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
             +YN LIN +C++G    A+ L++EM  +       T+  L+ GLCK   + G RL   
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFS 344

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAK 265
            M K  F  ++ ++N ++    + G I  A  +F+ ++ +D      TY++++H LC   
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 266 RLPSASKL 273
            L +A +L
Sbjct: 405 YLDAALRL 412



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 87/195 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+N+ ++ LC+    + A  +   +   G +P+ VTY  +I G  K G 
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGH 545

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR AR +  E+   G AP+ +TYT ++      +   L     S M  K    +   Y  
Sbjct: 546 LRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNA 605

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I       R+ EA  Y ++M   G+  +  SY  LIN  C  G  E A  L  EM  + 
Sbjct: 606 IINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRK 665

Query: 181 FECDKYTHTILIDGL 195
            + D +TH++ +  L
Sbjct: 666 IQPDSFTHSVFLKNL 680



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++NGLC  R  D A + F  +++ G +P   +Y ILI   C  G    A  + +E+
Sbjct: 602 TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREM 661

Query: 72  GDSGHAPNAITYTTIMKCCFRNRK 95
            D    P++ T++  +K   R+ +
Sbjct: 662 LDRKIQPDSFTHSVFLKNLHRDYQ 685


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 164/336 (48%), Gaps = 38/336 (11%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T+NI++NGLCK    +D A+ M   + K G++P++ T+N +I G CK  +L +A  
Sbjct: 322 PDIWTYNIVINGLCKMGNISDAAVVMNDAIVK-GYLPDVFTFNTMIDGYCKRLKLDSALQ 380

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++ +   G AP+AITY +++    +  K K   E    M  KG   +   Y  +I  F 
Sbjct: 381 LVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFC 440

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD------------ 174
           KI +L+EA+  + +M  DG+  D +S+NTLI+ +C+ G L+ AYLL              
Sbjct: 441 KINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD 500

Query: 175 -----------------------EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                                  EM  +G++ D YT+ +L+DG CKA N+  A +HL  M
Sbjct: 501 TFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEM 560

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSAS 271
              GF  ++  +  +++ L  + ++  A+ +   M V+       +   L   K+  +A 
Sbjct: 561 VSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIM-VRMGVVPEVVDTILSTDKKEIAAP 619

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           K+L+  L     I     + + +G+R +   R+A+K
Sbjct: 620 KILVEELMKKGHISYPTYEVLHEGVRDNKLTRKARK 655



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 156/311 (50%), Gaps = 5/311 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P  ATFN +L+ LC+      +  +   + K G      T NI I+GLC+ GR
Sbjct: 106 MLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGR 165

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +++ + D+  AP+ +TY T+M+   ++ K +   + L  M  +G   D F Y T
Sbjct: 166 LEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNT 224

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K   L+EAT+ ++  +  G   D V+Y +LIN  C EG +E A  L +E + + 
Sbjct: 225 IIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKD 284

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   +  L+ GLC+ G I  A   +  M + G   ++  YN +++ L K G I  A 
Sbjct: 285 LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAA 344

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V     VK    D FT+++M+   CK  +L SA +L+      G+        +V++GL
Sbjct: 345 VVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGL 404

Query: 297 RHSGCRREAKK 307
             +G  +E  +
Sbjct: 405 CKAGKAKEVNE 415



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 137/281 (48%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++ GLCK+     A +  R +   G +P+  TYN +I G CK   L+ A 
Sbjct: 180 IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEAT 239

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK+    G  P+ +TY +++         +  LE+ +  + K    D   Y +++   
Sbjct: 240 ELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGL 299

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G +  A   M +MV DG   DI +YN +IN  CK G +  A +++++   +G+  D 
Sbjct: 300 CRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDV 359

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T   +IDG CK   +  A   +E M   G   +   YN +++ L K GK       FE 
Sbjct: 360 FTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEE 419

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M +K    ++ TY+ ++ N CK  +L  AS +++   + G+
Sbjct: 420 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGL 460



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 133/270 (49%), Gaps = 4/270 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P    +N ++ GLC+     +AL++   + + G  P++ TYNI+I GLCK G +  A
Sbjct: 284 DLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDA 343

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             ++ +    G+ P+  T+ T++    +  K    L+++  M   G   D   Y +V+  
Sbjct: 344 AVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNG 403

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+ KE  +  E+M+  G + + ++YN LI  +CK  +LE A  ++  M + G   D
Sbjct: 404 LCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPD 463

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +   LI G C+ G++ GA L  + +++ G+ +  + +N ++        +  A  +F 
Sbjct: 464 TISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFG 523

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSA 270
            M  K    D +TY  +V   CKA  +  A
Sbjct: 524 EMISKGYKPDLYTYRVLVDGSCKAANVDRA 553



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 124/266 (46%), Gaps = 7/266 (2%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYKL 98
           G  P    YN ++  L        A  +   +  +G AP+A T+T  +K  C   R + +
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPH-V 63

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            L +L ++  +G       YCTV+      G   +A    ++M+   V  D+ ++N +++
Sbjct: 64  ALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLH 123

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
             C++G +  +  LL ++ K+G   +K+T  I I GLC+ G ++ A   +E M+      
Sbjct: 124 ALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAP 182

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++  YN ++  L KD K+  A      M     + D FTY++++   CK   L  A++LL
Sbjct: 183 DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELL 242

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSG 300
              +  G    +    ++++GL   G
Sbjct: 243 KDAIFKGFVPDRVTYCSLINGLCAEG 268



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 139/329 (42%), Gaps = 40/329 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    +N +++ L    Y D A +++  +   G  P+  T+ + IK  C  GR   A  
Sbjct: 7   PPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALR 66

Query: 67  ILKELGDSGHAPNAITYTTIMK---------------------------CCFRNRKYKL- 98
           +L+ L + G     + Y T+++                             F N  + L 
Sbjct: 67  LLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALC 126

Query: 99  -------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
                     +L+ + ++G + + F     I    + GRL+EA   +E M    +  D+V
Sbjct: 127 QKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM-DAYIAPDVV 185

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YNTL+   CK+ K++ A   L  M  QG   D +T+  +IDG CK   ++ A   L+  
Sbjct: 186 TYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDA 245

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
              GF  +   Y  +++ L  +G ++ A+ +F   + K    D   Y+S+V  LC+   +
Sbjct: 246 IFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLI 305

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             A +++   ++ G          V++GL
Sbjct: 306 LHALQVMNEMVEDGCHPDIWTYNIVINGL 334



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +LNGLCK          F  +   G  P  +TYNILI+  CK  +L  A 
Sbjct: 390 IAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEAS 449

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   G  P+ I++ T++    RN        +   +  KGY+     +  +I A+
Sbjct: 450 GVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAY 509

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                ++ A     +M++ G + D+ +Y  L++  CK   ++ AY+ L EM  +GF    
Sbjct: 510 SSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSM 569

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            T   +++ L     +  A   +  M ++G
Sbjct: 570 ATFGRVLNSLAMNHRVSEAVAIIHIMVRMG 599



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 82/180 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NI++   CK    + A  +   + + G VP+ +++N LI G C+ G 
Sbjct: 420 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGD 479

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + ++L + G++  A T+  ++         ++  +I   M  KGY  D + Y  
Sbjct: 480 LDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRV 539

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K   +  A  ++ +MV+ G    + ++  ++N      ++  A  ++  M + G
Sbjct: 540 LVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMG 599


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFNI++NGLC       A  + + ++++GFVP +VTYN L+   CK GR + A  +
Sbjct: 231 PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIEL 290

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G   +  TY   +     N +      +L  M+++  + +   Y T+I  FVK
Sbjct: 291 IDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVK 350

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++  A     +M    +  + V+YN LI  +C  G  E A  LLD ME  G   ++ T
Sbjct: 351 EGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVT 410

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----NVF 243
           +  L++GLCK    + A+  LE M          AY  ++D L K+G +D A+    N++
Sbjct: 411 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 470

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +     D  TYSS+++  C+   + SA +++    +SG+ + K     ++      G   
Sbjct: 471 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVT 530

Query: 304 EAKKI 308
           EA K+
Sbjct: 531 EAMKV 535



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 155/310 (50%), Gaps = 5/310 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   D+      + ++++GLCKN   D A+++   + K G  P+++TY+ LI G C+ G 
Sbjct: 434 MRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGN 493

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +++A+ I+  +  SG   N I Y+T++    ++      +++ + M   G+  D F    
Sbjct: 494 IKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNV 553

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++++  + G+L EA  ++  M   G+  + ++Y+ +IN Y   G    A+   D+M K G
Sbjct: 554 LVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCG 613

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                +T+  L+ GLCK GN+  A+  L  ++ I    +   YN ++    K G +  A+
Sbjct: 614 QHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAV 673

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ-KAVVDG 295
            +F+ M     + DS+TYSS++  LC+  +  +A  L  + +  G           +VDG
Sbjct: 674 ALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDG 733

Query: 296 LRHSGCRREA 305
           L  +G  + A
Sbjct: 734 LSKAGHPKAA 743



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 134/308 (43%), Gaps = 39/308 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++NG  K      A ++F  + K    P  VTYN LI G C  G    A 
Sbjct: 334 ISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEAL 393

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G   N +TY T++    ++ K++L   +L  M+          Y  +I   
Sbjct: 394 RLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGL 453

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF---- 181
            K G L EA   +  M  DGV  D+++Y++LIN +C+ G +++A  ++  M + G     
Sbjct: 454 CKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNK 513

Query: 182 -------------------------------ECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                                            D +T  +L+  LC+ G +  A   L +
Sbjct: 514 IIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCH 573

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKR 266
           M++IG   N   Y+CI++  G  G   +A + F+ M    +    FTY S++  LCK   
Sbjct: 574 MSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGN 633

Query: 267 LPSASKLL 274
           L  A K L
Sbjct: 634 LVEAKKFL 641



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MIC  +     T+N+ ++ LC N  +  A  + + ++K    P  VTYN LI G  K G+
Sbjct: 294 MICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGK 353

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+     +PN +TY  ++        ++  L +L  M+  G   +   Y T
Sbjct: 354 IGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGT 413

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K  + + A   +E+M  + + +  ++Y  LI+  CK G L+ A  L+  M K G
Sbjct: 414 LLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDG 473

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ LI+G C+ GNIK A+  +  M + G   N   Y+ ++    + G +  A+
Sbjct: 474 VNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAM 533

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            V+  M       D FT + +V +LC+  +L  A K L
Sbjct: 534 KVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFL 571



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 39/305 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N++L  + K++ T+    +FR +   G  P + T+NILI GLC  G L+ A  +
Sbjct: 196 PSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNL 255

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++ ++G  P  +TY T++                              YC       K
Sbjct: 256 LKQMEENGFVPTIVTYNTLLNW----------------------------YC-------K 280

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR K A + ++ M+  G++ D+ +YN  I+  C   +   AYLLL +M K+    ++ T
Sbjct: 281 KGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVT 340

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+G  K G I  A      M+K     N   YN ++      G  + A+ + + ME
Sbjct: 341 YNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHME 400

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 +  TY ++++ LCK ++   A +LL     + + +   A   ++DGL  +G   
Sbjct: 401 AAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLD 460

Query: 304 EAKKI 308
           EA ++
Sbjct: 461 EAVQL 465



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 147/310 (47%), Gaps = 4/310 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P T  FN +++   +      A   F  ++  G  P L TYNIL+ G  K   L     +
Sbjct: 757  PDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSL 816

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
               +   G  P+ +T+ +++    ++    LG+++L  M  +G   D F +  +I  + +
Sbjct: 817  YSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSE 876

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             G++++A D +  M T GV  D  +YN + N   K+     + ++L EM + G       
Sbjct: 877  SGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQ 936

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
            +  LI+G+C+ G+I+GA    + M  +GF S+  A + +V  L   GK + A+ V + M 
Sbjct: 937  YITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHML 996

Query: 247  ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                +    T+++++H  C+  ++  A KL       G+++   A   ++ G+  +G   
Sbjct: 997  RMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSA 1056

Query: 304  EAKKIQSKIR 313
             A ++  ++R
Sbjct: 1057 AAFELYEEMR 1066



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 139/308 (45%), Gaps = 5/308 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T N++++ LC++     A +    + + G VP  +TY+ +I G    G    A     ++
Sbjct: 550 TCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDM 609

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  TY +++K   +        + L+ +       D   Y T++A   K G L
Sbjct: 610 IKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNL 669

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYTHTI 190
            EA    ++MV + V  D  +Y++L+   C++GK + A  L    M +     +   +T 
Sbjct: 670 HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTC 729

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248
           L+DGL KAG+ K A    E M K G   +  A+N I+D   + G++  A + F +M    
Sbjct: 730 LVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWG 789

Query: 249 --KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              +  TY+ ++H   K + L     L  + ++ G+   K    +++ GL  SG      
Sbjct: 790 VCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGV 849

Query: 307 KIQSKIRM 314
           K+  K+ M
Sbjct: 850 KLLGKMIM 857



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 106/252 (42%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            TFNI++N   ++     A  +   +   G  P+  TYN +  GL K    R +  +L E+
Sbjct: 866  TFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEM 925

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             ++G  P    Y T++    R    +   ++   M+  G+         ++   +  G+ 
Sbjct: 926  LENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKT 985

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            ++A   ++ M+   +   I ++ TL++ +C++ K+  A  L   ME  G + D   + +L
Sbjct: 986  EDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVL 1045

Query: 192  IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
            I G+C  G+   A    E M       N+  Y  +VD +     +     +   ++ +  
Sbjct: 1046 IMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGL 1105

Query: 252  FTYSSMVHNLCK 263
             ++     +L K
Sbjct: 1106 ISWGGSTQHLDK 1117



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 36/207 (17%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+   + P  A +  ++NG+C+      A ++   ++  GF    V  + +++GL   G+
Sbjct: 925  MLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGK 984

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
               A  +L  +      P   T+TT+M    R+ K      I  A+K KG          
Sbjct: 985  TEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAK------IAEALKLKGV--------- 1029

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                                M   G++LD+V+YN LI   C  G   AA+ L +EM  + 
Sbjct: 1030 --------------------MELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRD 1069

Query: 181  FECDKYTHTILIDGLCKAGN-IKGARL 206
               +  T+ +L+D +  A N I+G +L
Sbjct: 1070 LCPNITTYAVLVDAISAANNLIQGEKL 1096



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           ++ LI +Y KEG ++ A    + +   GF+   YT  +++  + K    +        M+
Sbjct: 166 FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMS 225

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G   N+  +N +++ L  +G +  A N+ + ME    V    TY+++++  CK  R  
Sbjct: 226 DKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYK 285

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           +A +L+   +  G+          +D L  +    +A  +  K+R   IS
Sbjct: 286 AAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMIS 335


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 4/305 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P   TFNI++NGLC       A  + + ++++GFVP +VTYN L+   CK GR + A  +
Sbjct: 982  PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIEL 1041

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +  +   G   +  TY   +     N +      +L  M+++  + +   Y T+I  FVK
Sbjct: 1042 IDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVK 1101

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             G++  A     +M    +  + V+YN LI  +C  G  E A  LLD ME  G   ++ T
Sbjct: 1102 EGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVT 1161

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----NVF 243
            +  L++GLCK    + A+  LE M          AY  ++D L K+G +D A+    N++
Sbjct: 1162 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 1221

Query: 244  ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +     D  TYSS+++  C+   + SA +++    +SG+ + K     ++      G   
Sbjct: 1222 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVT 1281

Query: 304  EAKKI 308
            EA K+
Sbjct: 1282 EAMKV 1286



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 155/310 (50%), Gaps = 5/310 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M   D+      + ++++GLCKN   D A+++   + K G  P+++TY+ LI G C+ G 
Sbjct: 1185 MRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGN 1244

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +++A+ I+  +  SG   N I Y+T++    ++      +++ + M   G+  D F    
Sbjct: 1245 IKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNV 1304

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++++  + G+L EA  ++  M   G+  + ++Y+ +IN Y   G    A+   D+M K G
Sbjct: 1305 LVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCG 1364

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 +T+  L+ GLCK GN+  A+  L  ++ I    +   YN ++    K G +  A+
Sbjct: 1365 QHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAV 1424

Query: 241  NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ-KAVVDG 295
             +F+ M     + DS+TYSS++  LC+  +  +A  L  + +  G           +VDG
Sbjct: 1425 ALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDG 1484

Query: 296  LRHSGCRREA 305
            L  +G  + A
Sbjct: 1485 LSKAGHPKAA 1494



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 134/308 (43%), Gaps = 39/308 (12%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            ++P   T+N ++NG  K      A ++F  + K    P  VTYN LI G C  G    A 
Sbjct: 1085 ISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEAL 1144

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +L  +  +G   N +TY T++    ++ K++L   +L  M+          Y  +I   
Sbjct: 1145 RLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGL 1204

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE--- 182
             K G L EA   +  M  DGV  D+++Y++LIN +C+ G +++A  ++  M + G     
Sbjct: 1205 CKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNK 1264

Query: 183  --------------------------------CDKYTHTILIDGLCKAGNIKGARLHLEY 210
                                             D +T  +L+  LC+ G +  A   L +
Sbjct: 1265 IIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCH 1324

Query: 211  MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKR 266
            M++IG   N   Y+CI++  G  G   +A + F+ M    +    FTY S++  LCK   
Sbjct: 1325 MSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGN 1384

Query: 267  LPSASKLL 274
            L  A K L
Sbjct: 1385 LVEAKKFL 1392



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 4/278 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MIC  +     T+N+ ++ LC N  +  A  + + ++K    P  VTYN LI G  K G+
Sbjct: 1045 MICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGK 1104

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  A  +  E+     +PN +TY  ++        ++  L +L  M+  G   +   Y T
Sbjct: 1105 IGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGT 1164

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++    K  + + A   +E+M  + + +  ++Y  LI+  CK G L+ A  L+  M K G
Sbjct: 1165 LLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDG 1224

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               D  T++ LI+G C+ GNIK A+  +  M + G   N   Y+ ++    + G +  A+
Sbjct: 1225 VNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAM 1284

Query: 241  NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
             V+  M       D FT + +V +LC+  +L  A K L
Sbjct: 1285 KVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFL 1322



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 39/305 (12%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P   T N++L  + K++ T+    +FR +   G  P + T+NILI GLC  G L+ A  +
Sbjct: 947  PSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNL 1006

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            LK++ ++G  P  +TY T++                              YC       K
Sbjct: 1007 LKQMEENGFVPTIVTYNTLLN----------------------------WYC-------K 1031

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             GR K A + ++ M+  G++ D+ +YN  I+  C   +   AYLLL +M K+    ++ T
Sbjct: 1032 KGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVT 1091

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +  LI+G  K G I  A      M+K     N   YN ++      G  + A+ + + ME
Sbjct: 1092 YNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHME 1151

Query: 248  VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                  +  TY ++++ LCK ++   A +LL     + + +   A   ++DGL  +G   
Sbjct: 1152 AAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLD 1211

Query: 304  EAKKI 308
            EA ++
Sbjct: 1212 EAVQL 1216



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 147/310 (47%), Gaps = 4/310 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P T  FN +++   +      A   F  ++  G  P L TYNIL+ G  K   L     +
Sbjct: 1508 PDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSL 1567

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
               +   G  P+ +T+ +++    ++    LG+++L  M  +G   D F +  +I  + +
Sbjct: 1568 YSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSE 1627

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             G++++A D +  M T GV  D  +YN + N   K+     + ++L EM + G       
Sbjct: 1628 SGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQ 1687

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
            +  LI+G+C+ G+I+GA    + M  +GF S+  A + +V  L   GK + A+ V + M 
Sbjct: 1688 YITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHML 1747

Query: 247  ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                +    T+++++H  C+  ++  A KL       G+++   A   ++ G+  +G   
Sbjct: 1748 RMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSA 1807

Query: 304  EAKKIQSKIR 313
             A ++  ++R
Sbjct: 1808 AAFELYEEMR 1817



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 5/308 (1%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            T N++++ LC++     A +    + + G VP  +TY+ +I G    G    A     ++
Sbjct: 1301 TCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDM 1360

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
               G  P+  TY +++K   +        + L+ +       D   Y T++A   K G L
Sbjct: 1361 IKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNL 1420

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL-DEMEKQGFECDKYTHTI 190
             EA    ++MV + V  D  +Y++L+   C++GK   A  L    M +     +   +T 
Sbjct: 1421 HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTC 1480

Query: 191  LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
            L+DGL KAG+ K A    E M K G   +  A+N I+D   + G++  A + F +M    
Sbjct: 1481 LVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWG 1540

Query: 248  -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
               +  TY+ ++H   K + L     L  + ++ G+   K    +++ GL  SG      
Sbjct: 1541 VCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGV 1600

Query: 307  KIQSKIRM 314
            K+  K+ M
Sbjct: 1601 KLLGKMIM 1608



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 96/219 (43%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            TFNI++N   ++     A  +   +   G  P+  TYN +  GL K    R +  +L E+
Sbjct: 1617 TFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEM 1676

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             ++G  P    Y T++    R    +   ++   M+  G+         ++   +  G+ 
Sbjct: 1677 LENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKT 1736

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            ++A   ++ M+   +   I ++ TL++ +C++ K+  A  L   ME  G + D   + +L
Sbjct: 1737 EDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVL 1796

Query: 192  IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            I G+C  G+   A    E M       N+  Y  +VD +
Sbjct: 1797 IMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAI 1835



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 36/207 (17%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+   + P  A +  ++NG+C+      A ++   ++  GF    V  + +++GL   G+
Sbjct: 1676 MLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGK 1735

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
               A  +L  +      P   T+TT+M    R+ K      I  A+K KG          
Sbjct: 1736 TEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAK------IAEALKLKGV--------- 1780

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                                M   G++LD+V+YN LI   C  G   AA+ L +EM  + 
Sbjct: 1781 --------------------MELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRD 1820

Query: 181  FECDKYTHTILIDGLCKAGN-IKGARL 206
               +  T+ +L+D +  A N I+G +L
Sbjct: 1821 LCPNITTYAVLVDAISAANNLIQGEKL 1847



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 153  YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
            ++ LI +Y KEG ++ A    + +   GF+   YT  +++  + K    +        M+
Sbjct: 917  FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMS 976

Query: 213  KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
              G   N+  +N +++ L  +G +  A N+ + ME    V    TY+++++  CK  R  
Sbjct: 977  DKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYK 1036

Query: 269  SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            +A +L+   +  G+          +D L  +    +A  +  K+R   IS
Sbjct: 1037 AAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMIS 1086


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 149/309 (48%), Gaps = 9/309 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T  FN +L+ L KN+     + +F+  + +G  P+L T +ILI   C    +  A  
Sbjct: 55  PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFS 114

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +   +   G  P+AIT  T++K  CFR  + K  L     +  +G+  D   Y T+I   
Sbjct: 115 VFANILKRGFHPDAITLNTLIKGLCFRG-EIKKTLYFHDQVVAQGFQLDQVSYGTLINGL 173

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  K     + ++    V+ D+V YNT+IN  CK   L  A  +  EM  +G   D 
Sbjct: 174 CKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDV 233

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAINV 242
            T+T LI G C  G +K A   L  M     + ++  ++ ++D LGK+GK   +D A+++
Sbjct: 234 VTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSL 293

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           FE M+    + D  TY+S++  LCK   L  A  LL    + G++    +   ++DGL  
Sbjct: 294 FEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCK 353

Query: 299 SGCRREAKK 307
            G    AK+
Sbjct: 354 GGRLEIAKE 362



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 145/279 (51%), Gaps = 7/279 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++NGLCK   T    R+ R L+ H   P++V YN +I  LCK   L  A  +  E
Sbjct: 164 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSE 223

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G +P+ +TYTT++       K K    +L+ MK K    D + +  +I A  K G+
Sbjct: 224 MIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGK 283

Query: 131 LK---EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            K   EA    E+M    +  DIV+YN+LI+  CK   LE A  LL EM++ G + D Y+
Sbjct: 284 KKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYS 343

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +TIL+DGLCK G ++ A+   +++   G   N+  YN +++ L K G    A+++   ME
Sbjct: 344 YTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKME 403

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
               + ++ T+ +++  L +      A K+L   +  G+
Sbjct: 404 GKGCMPNAITFRTIICALSEKDENDKAEKILREMIARGL 442



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 154/315 (48%), Gaps = 7/315 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T +I++N  C   +   A  +F  + K GF P+ +T N LIKGLC  G ++   
Sbjct: 89  ITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTL 148

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +   ++   G   + ++Y T++    +  + K    +L  ++      D   Y T+I + 
Sbjct: 149 YFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSL 208

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   L +A D   +M+  G+  D+V+Y TLI+ +C  GK++ A+ LL+EM+ +    D 
Sbjct: 209 CKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDV 268

Query: 186 YTHTILIDGLCKAGN---IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           YT ++LID L K G    +  A    E M       ++  YN ++D L K+  ++ AI +
Sbjct: 269 YTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIAL 328

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            + M+      D ++Y+ ++  LCK  RL  A +     L  G  +       +++GL  
Sbjct: 329 LKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCK 388

Query: 299 SGCRREAKKIQSKIR 313
           +G   EA  ++SK+ 
Sbjct: 389 AGLFGEAMDLKSKME 403



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 3/183 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T+  +++G C       A  +   ++     P++ T+++LI  L K G+
Sbjct: 224 MIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGK 283

Query: 61  ---LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
              +  A  + +E+      P+ +TY +++    +N   +  + +L  MK  G   D + 
Sbjct: 284 KKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYS 343

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y  ++    K GRL+ A ++ + ++  G  L++  YN +IN  CK G    A  L  +ME
Sbjct: 344 YTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKME 403

Query: 178 KQG 180
            +G
Sbjct: 404 GKG 406



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 74/142 (52%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+N +++GLCKN + + A+ + + +++HG  P++ +Y IL+ GLCK GRL  A
Sbjct: 301 NMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIA 360

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           +   + L   G   N   Y  ++    +   +   +++ S M+ KG   +   + T+I A
Sbjct: 361 KEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICA 420

Query: 125 FVKIGRLKEATDYMEQMVTDGV 146
             +     +A   + +M+  G+
Sbjct: 421 LSEKDENDKAEKILREMIARGL 442


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 127/251 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TFN +++G C+    D A  +   ++K    P LVTYN+LI GLC AGR
Sbjct: 269 MIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGR 328

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L E+   G  P+ ITY +++    RN + +   +I + M  +G   DG  YCT
Sbjct: 329 ANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCT 388

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +  A +K  R  EA   ++ M   G   ++ ++N+L+   C   +L+ A  LL  M + G
Sbjct: 389 LAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVG 448

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ +L+ GLCKAG +  A+  L  M   G    + +   IV  L ++GK D A+
Sbjct: 449 CDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLAL 508

Query: 241 NVFESMEVKDS 251
           + F+ +   +S
Sbjct: 509 HYFDQVVAAES 519



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P +  FNI+++GLCK      A +M   + + G VP++VTYN LI GLCK+ R+  AR +
Sbjct: 171 PDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQL 230

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN +TY T++    +     L  +++  M + G   D   + ++I+ F +
Sbjct: 231 LETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQ 290

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ +A + +  M       ++V+YN LI+  C  G+   A  LL EM+ +G   D  T
Sbjct: 291 KSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIIT 350

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----NVF 243
           +  LI   C+   I+ A      M + G   +  +Y  +   L K  + D A     N+F
Sbjct: 351 YNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMF 410

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           ++  + + FT++S++  LC ++RL  A  LL    + G     S  + +V GL  +G   
Sbjct: 411 DAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVD 470

Query: 304 EAKKI 308
           +AK++
Sbjct: 471 DAKEV 475



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 147/299 (49%), Gaps = 4/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++GLCK+   + A ++   + K    P LVTYN LI G CK G    A 
Sbjct: 204 IVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAH 263

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++ +  SG  P+ +T+ +++    +  K     E+L  MK+     +   Y  +I+  
Sbjct: 264 QLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGL 323

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR  EA + + +M   G+  DI++YN+LI ++C+  ++E A+ + + M ++G   D 
Sbjct: 324 CDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDG 383

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  L   L K+     A   L+ M   G   NL  +N +++ L    ++D A ++   
Sbjct: 384 ISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAV 443

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M        + TY  +V  LCKA R+  A ++L+  +  G++ L S+   +V  L   G
Sbjct: 444 MRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREG 502



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 9/269 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRG--LQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T N +L  L K R    A ++FR   L +H      +TYN LI G CKAG +  A  +L 
Sbjct: 71  TCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNH-ITYNTLIGGFCKAGDMERAFQLLA 129

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ + GH+P+ +T+++I++           ++     +      D   +  ++    K  
Sbjct: 130 EMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR--ESVECAPDSVLFNILVHGLCKAN 187

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L EA   +E+M   G+  D+V+YN+LI+  CK  ++E A  LL+ M K+    +  T+ 
Sbjct: 188 QLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYN 247

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            LI G CK G    A   +E M + G   ++  +N ++    +  KID A  V   M+  
Sbjct: 248 TLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKG 307

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
               +  TY+ ++  LC A R   A +LL
Sbjct: 308 LCAPNLVTYNVLISGLCDAGRANEACELL 336



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 6/155 (3%)

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++YNTLI  +CK G +E A+ LL EM+++G   D  TH+ ++  LC  GN+  A  +   
Sbjct: 106 ITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE 165

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
             +   DS L  +N +V  L K  ++  A  + E M     V D  TY+S++  LCK+ R
Sbjct: 166 SVECAPDSVL--FNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYR 223

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           +  A +LL + +K  VR        ++ G   +GC
Sbjct: 224 MEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGC 258


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 143/315 (45%), Gaps = 41/315 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ +M++ +CK R  D + R+   + + G VP +VTYN LI+G C+ GR+  A  I
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEI 411

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRK-------------------------------- 95
           L  +  +   PN  TY  ++ C F  RK                                
Sbjct: 412 LGLMESNNCRPNERTYNELI-CGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQC 470

Query: 96  ----YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
               +    ++L  +K  G   D + Y   I    K  R++EA D    +   G++ + V
Sbjct: 471 KAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEV 530

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
            Y  LI+ +CK GK++ A  LL+ M  +    +  T+  LI G+CK G ++     +E M
Sbjct: 531 MYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENM 590

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRL 267
           +K+G    +  Y  +++ + ++G  DHA  VF  M       D +TY++ +H  C +  +
Sbjct: 591 SKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNV 650

Query: 268 PSASKLLLSCLKSGV 282
             A  ++   +++GV
Sbjct: 651 KEAEGMMARMIEAGV 665



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 160/312 (51%), Gaps = 4/312 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+ ++++ L  N      + +F  +++    P + TY +++  +CK  +L  +
Sbjct: 314 DCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDES 373

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R IL E+ + G  P+ +TY  +++      + +  LEIL  M+      +   Y  +I  
Sbjct: 374 RRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICG 433

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K   + +A   + +M+   +   +V+YN+LI++ CK G  ++AY LLD +++ G   D
Sbjct: 434 FSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPD 493

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           ++T+++ ID LCK+  ++ A      + + G  +N   Y  ++D   K GKID AI++ E
Sbjct: 494 QWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLE 553

Query: 245 SMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M  +D    S TY+S+++ +CK  ++     ++ +  K GV+   +    +++ +   G
Sbjct: 554 RMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREG 613

Query: 301 CRREAKKIQSKI 312
               A ++ +++
Sbjct: 614 DFDHANRVFNQM 625



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 4/304 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P + T+  ++ G C+N   ++A ++F  +   G     V+Y  +I GLC+AGR+    
Sbjct: 245 LSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGI 304

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K++ +    P   TYT I+   F N +   G+++ + M+ +    +   Y  ++ A 
Sbjct: 305 SLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAM 364

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +L E+   + +M+  G+   +V+YN LI  YC+EG++EAA  +L  ME      ++
Sbjct: 365 CKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNE 424

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G  K  ++  A   L  M +     +L  YN ++    K G  D A  + + 
Sbjct: 425 RTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDL 484

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++    V D +TYS  +  LCK+KR+  A  L  S  + G++  +    A++DG   +G 
Sbjct: 485 LKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGK 544

Query: 302 RREA 305
             EA
Sbjct: 545 IDEA 548



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 117/246 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+N +++  CK  + D+A ++   L+++G VP+  TY++ I  LCK+ R
Sbjct: 450 MLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKR 509

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   L + G   N + YT ++    +  K    + +L  M  +    +   Y +
Sbjct: 510 MEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNS 569

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G+++E    +E M   GV+  + +Y  LI    +EG  + A  + ++M   G
Sbjct: 570 LIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFG 629

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D YT+T  I   C +GN+K A   +  M + G   +   Y  ++    + G    A 
Sbjct: 630 HKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAF 689

Query: 241 NVFESM 246
           NV + M
Sbjct: 690 NVLKRM 695



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+++ ++ LCK++  + A  +F  L++ G     V Y  LI G CKAG++  A 
Sbjct: 490 LVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAI 549

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ +      PN+ TY +++    +  K + GL ++  M + G       Y  +I   
Sbjct: 550 SLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEM 609

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++ G    A     QMV+ G + D+ +Y   I+ YC  G ++ A  ++  M + G   D 
Sbjct: 610 LREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDS 669

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            T+T+LI    + G    A   L+ M   G D +   +N ++
Sbjct: 670 LTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 136/296 (45%), Gaps = 10/296 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N +L  L +    D   R++  +     VP + T N ++    K G +  A   + ++
Sbjct: 181 SYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKI 240

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G +P++ TYT+++    RN       ++ + M  KG   +   Y T+I    + GR+
Sbjct: 241 FQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRI 300

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLIN-LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            E     ++M  D     + +Y  +I+ L+  +  LE    L +EM ++  E + +T+T+
Sbjct: 301 DEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMD-LFNEMRERSCEPNVHTYTV 359

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248
           ++D +CK   +  +R  L  M + G   ++  YN ++    ++G+I+ A+ +   ME   
Sbjct: 360 MVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNN 419

Query: 249 --KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
              +  TY+ ++    K K +  A  LL   L+S +    +      + L H  C+
Sbjct: 420 CRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKL----TPSLVTYNSLIHVQCK 471



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 4/155 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P ++T+N ++ G+CK       L M   + K G  P + TY ILI+ + + G    A
Sbjct: 559 DCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHA 618

Query: 65  RWILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
             +  ++   GH P+  TYT  +   C   N K   G+  ++ M   G   D   Y  +I
Sbjct: 619 NRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGM--MARMIEAGVMPDSLTYTLLI 676

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           +A+ ++G   +A + +++M+  G       +N LI
Sbjct: 677 SAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 49/205 (23%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDG----VQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           ++I A V +  ++   D++ QM  D      +L + SYN L+ +        A +L++DE
Sbjct: 145 SMIKACVSVDDIRFLLDFLRQMNRDDNDIKFKLSVRSYNELLMML-------ARFLMIDE 197

Query: 176 MEKQGFEC-------DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           M++   E        + YT   +++   K GNI  A L   Y++KI              
Sbjct: 198 MKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANL---YVSKI-------------- 240

Query: 229 RLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
                         F++    DSFTY+S++   C+   + SA K+       G R  + +
Sbjct: 241 --------------FQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVS 286

Query: 289 QKAVVDGLRHSGCRREAKKIQSKIR 313
              ++ GL  +G   E   +  K+R
Sbjct: 287 YTTIIHGLCEAGRIDEGISLFKKMR 311


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +NR+  L +EI   M  +  + D   Y T+I   
Sbjct: 227 GLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M ++    D 
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 112/215 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK  R
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            + D  T+T++I+  CK G++      L+ M + G
Sbjct: 377 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  +   G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              ++M+  G+  + V++ TLI  +CK  +++ A  +  +M  Q    D  T+  LI GL
Sbjct: 227 GLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G ++ A       + E++ + D
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRL-D 345

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 346 DVAYTALISGLCQEGRYLDAEKVLREMLSVGLK 378



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 35/187 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  ++ G CKNR  D A+ +++ +      P+L+TYN LI GLCK G 
Sbjct: 232 MLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCC---------FRNRK---------------- 95
           L+ A  ++ E+   G  P+ ITYTT++  C         F +RK                
Sbjct: 292 LKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTA 351

Query: 96  ----------YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                     Y    ++L  M   G   D   Y  +I  F K G +   +  +++M  DG
Sbjct: 352 LISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411

Query: 146 VQLDIVS 152
               +VS
Sbjct: 412 HVPSVVS 418


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       AL     L   GF    V+Y  LI G+CK G  R A  +
Sbjct: 127 PDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKL 186

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      PN + Y+TI+    + +       + S M  KG + D   Y T+I  F  
Sbjct: 187 LQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCI 246

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+LKEA   + +MV   +  ++ +YN L++  CKEGK++ A  +L  M K   + D  T
Sbjct: 247 EGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+DG      +K A+     M+ +G   ++  Y  +++   K+  +D A+N+F+ M 
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K+      TYSS++  LCK+ R+P    L+      G         +++DGL  +G   
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLD 426

Query: 304 EAKKIQSKIR 313
            A  + +K++
Sbjct: 427 RAIALFNKMK 436



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 110/192 (57%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+ I++NG CKN+  D AL +F+ + +   VP +VTY+ LI GLCK+GR+    
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVW 394

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ D G   N ITY++++    +N      + + + MK +G   + F +  ++   
Sbjct: 395 DLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGL 454

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRLK+A +  + ++T G  L++ +YN +I+ +CK+G LE A  +L +ME  G   D 
Sbjct: 455 CKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDA 514

Query: 186 YTHTILIDGLCK 197
            T  I+I  L K
Sbjct: 515 VTFEIIIIALFK 526



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 153/317 (48%), Gaps = 5/317 (1%)

Query: 2   ICGDLT-PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           I G LT P    ++ +++ LCK +    A  +F  +   G   ++VTY+ LI G C  G+
Sbjct: 190 IDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK 249

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +L E+      PN  TY  ++    +  K K    +L+ M +     D   Y T
Sbjct: 250 LKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYST 309

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +  +  +K+A      M   GV  D+ +Y  LIN +CK   ++ A  L  EM ++ 
Sbjct: 310 LMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN 369

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T++ LIDGLCK+G I      ++ M+  G  +N+  Y+ ++D L K+G +D AI
Sbjct: 370 MVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAI 429

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+ +    ++FT++ ++  LCK  RL  A ++    L  G  +       ++DG 
Sbjct: 430 ALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGH 489

Query: 297 RHSGCRREAKKIQSKIR 313
              G   EA  + SK+ 
Sbjct: 490 CKQGLLEEALTMLSKME 506



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI+++ LCK      A  +   + K    P+++TY+ L+ G      
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ +   +   G  P+  TYT ++    +N+     L +   M +K        Y +
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+    D +++M   G   ++++Y++LI+  CK G L+ A  L ++M+ QG
Sbjct: 380 LIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQG 439

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T TIL+DGLCK G +K A+   + +   G+  N+  YN ++D   K G ++ A+
Sbjct: 440 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEAL 499

Query: 241 NVFESME----VKDSFTYSSMVHNLCK 263
            +   ME    + D+ T+  ++  L K
Sbjct: 500 TMLSKMEDNGCIPDAVTFEIIIIALFK 526



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 8/266 (3%)

Query: 24   RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 83
            ++   A+ +   L+  G  P+L T NILI   C  G++     IL ++   G+ P+ IT+
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 84   TTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
            TT++   C + +  K  L     +  +G+  +   Y T+I    KIG  + A   + ++ 
Sbjct: 1000 TTLINGLCLKGQVNK-ALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 143  TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
                + D+V YNT+I+  CK   +  AY L  EM  +G   D  T+  LI G C  G +K
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLK 1118

Query: 203  GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK--IDHAINVFESMEVK----DSFTYSS 256
             A   L  M     + N+  YN +VD L K+GK  +D ++++   ME      ++ T+  
Sbjct: 1119 EAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEI 1178

Query: 257  MVHNLCKAKRLPSASKLLLSCLKSGV 282
            ++  L +        KLL   +  G+
Sbjct: 1179 IISALFEKDENDKVEKLLHEMIARGL 1204



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P T TF  ++NGLC     + AL     L   GF    V+Y  LI G+CK G  R A  +
Sbjct: 994  PDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKL 1053

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            L+++      P+ + Y TI+    +++       +   M  KG + D   Y T+I  F  
Sbjct: 1054 LRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCI 1113

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK--LEAAYLLLDEMEKQGFECDK 185
            +G+LKEA   + +MV   +  ++ +YN L++  CKEGK  L+ +  +L +ME  G + + 
Sbjct: 1114 VGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANA 1173

Query: 186  YTHTILIDGL 195
             T  I+I  L
Sbjct: 1174 VTFEIIISAL 1183



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 133/299 (44%), Gaps = 39/299 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C   TP    FN +L+   K ++   A+ +   L+  G  P+L+T NILI   C  G+
Sbjct: 50  MLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQ 109

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +                                     G  +L+ + ++GY  D     T
Sbjct: 110 I-----------------------------------TFGFSVLAKILKRGYPPDTVTLNT 134

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G++K+A  + ++++  G QL+ VSY TLIN  CK G   AA  LL +++ + 
Sbjct: 135 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRL 194

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +   ++ +ID LCK   +  A      M   G  +++  Y+ ++     +GK+  AI
Sbjct: 195 TKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +   M +K    + +TY+ +V  LCK  ++  A  +L   LK+ V+        ++DG
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDG 313


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 162/317 (51%), Gaps = 17/317 (5%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L+ L K+R+   A  + R L++  F P++VTYN L  G C+      A  +L+++ 
Sbjct: 173 FNSLLDALGKSRHASKAASLVRALERR-FPPDVVTYNTLADGWCRVKDTSRALDLLRQMA 231

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----FDGFGYCTVIAAFVK 127
           +SG AP   TY  I+K  FR  + +        MK++G        D   Y T+I     
Sbjct: 232 ESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGV 291

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L +A    ++M  +G    I +YN LI + CK+G +E A  + D+M ++ +  +  T
Sbjct: 292 AGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVT 351

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LI GLC  G I  A   +E M   G +  ++ YN ++    ++G++D A+++FE M 
Sbjct: 352 YTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMS 411

Query: 248 -----VKDSFTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
                + +  TY+ ++  +   KR   +  A+++++  ++ G    +     V++GL  +
Sbjct: 412 KGEECLPNQDTYNIVISAMFVRKRAEDMAIAARMVMEMVERGYLPRRFMLNRVLNGLMLT 471

Query: 300 GCR---REAKKIQSKIR 313
           G +   R+  ++Q K R
Sbjct: 472 GNQQLSRDLLRMQEKYR 488



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 8/197 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-----VPELVTYNILIKGLCKAGR 60
           + P   T+N++L G  +     +A   F  ++K G       P++V+Y  +I GL  AG+
Sbjct: 235 IAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQ 294

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +  E+   G  P   TY  +++   +    +  + +   M RK Y  +   Y  
Sbjct: 295 LDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTV 354

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I     +G++  A   ME+M  +G +  + +YN LI    +EG+++ A  L + M K G
Sbjct: 355 LIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMSK-G 413

Query: 181 FEC--DKYTHTILIDGL 195
            EC  ++ T+ I+I  +
Sbjct: 414 EECLPNQDTYNIVISAM 430



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 4/142 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D  P   T+ +++ GLC     D A+++   ++  G  P + TYN+LI+   + G 
Sbjct: 340 MIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGE 399

Query: 61  LRTARWILKELGDSGH-APNAITYTTIMKCCF---RNRKYKLGLEILSAMKRKGYTFDGF 116
           +  A  + + +       PN  TY  ++   F   R     +   ++  M  +GY    F
Sbjct: 400 MDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKRAEDMAIAARMVMEMVERGYLPRRF 459

Query: 117 GYCTVIAAFVKIGRLKEATDYM 138
               V+   +  G  + + D +
Sbjct: 460 MLNRVLNGLMLTGNQQLSRDLL 481


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 39/346 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P  ATF  +++GL K    D+A R++  +     +P +V Y  LI+   K  R      
Sbjct: 337 SPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHK 396

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + KE+  SG +P+ +   T M C F+  + + G  +   +K +G+  D   Y  +I + V
Sbjct: 397 MYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLV 456

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM---------- 176
           K G  +E  +    M   G  LD  +YNT+I+ +CK GK+  AY LL+EM          
Sbjct: 457 KAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVV 516

Query: 177 -------------------------EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                                    +  G E ++  ++ LIDG  K G +  A L +E M
Sbjct: 517 TYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEM 576

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            + G   N+  +NC++D L K  +I+ A+  F+SM+      +  TY  +++ LCK ++ 
Sbjct: 577 MQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKF 636

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             A        K G++       A++ GL  SG   +A  +  + R
Sbjct: 637 NKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFR 682



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 155/353 (43%), Gaps = 40/353 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P     N  ++ + K   T+    +F  ++  GF+P+  +Y+ILI  L KAG  R    
Sbjct: 407 SPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYE 466

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   + D G   +   Y T++    ++ K     ++L  MK  G+      Y +V+    
Sbjct: 467 LYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLA 526

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KI RL EA    E+  ++G++L+ V Y++LI+ + K G+++ AYL+++EM ++G   + Y
Sbjct: 527 KIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVY 586

Query: 187 -----------------------------------THTILIDGLCKAGNIKGARLHLEYM 211
                                              T+ ILI+GLCK      A +  + M
Sbjct: 587 TWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEM 646

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            K G   N   Y  ++  L K G +  A ++FE       + DS +Y++M+  L  A R 
Sbjct: 647 QKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRA 706

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR-MAKISH 319
             A +L       G  I      A++D L  + C  +A  + + +R  AK  H
Sbjct: 707 LDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQAAIVGAVLRETAKSQH 759



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T NIM++ LCK +  D A  +F G+      P+  T+  LI GL K GR+  A 
Sbjct: 301 LFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAY 360

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + + D+   PN + YT++++  F+  + + G ++   M R G + D     T +   
Sbjct: 361 RIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCV 420

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  ++     E++   G   D  SY+ LI+   K G     Y L   M+ QG   D 
Sbjct: 421 FKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDT 480

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  +IDG CK+G +  A   LE M  +G    +  Y  +VD L K  ++D A  +FE 
Sbjct: 481 RAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEE 540

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +      +   YSS++    K  R+  A  ++   ++ G+         ++DGL
Sbjct: 541 AKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGL 595



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 131/273 (47%), Gaps = 5/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N+ ++   K    D A + F  ++ +G VP+ VTY  ++  LCKA RL  A  I +++ 
Sbjct: 134 YNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQME 193

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            +   P A  Y T++       K+     +L   + KG       Y  ++    K G+  
Sbjct: 194 QNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTD 253

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A    E+M  D +  ++ +YN +I + CK G +EAA+ + D M++ G   +  T  I+I
Sbjct: 254 KALRIFEEMKRDAMP-NLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMI 312

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EV 248
           D LCKA  +  A    E M+      +   +  ++D LGK G++D A  ++E M    ++
Sbjct: 313 DRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQI 372

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +   Y+S++ N  K  R     K+    ++SG
Sbjct: 373 PNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSG 405



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 142/337 (42%), Gaps = 40/337 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +L  L K   TD ALR+F  +++   +P L TYNI+I  LCKAG +  A  +
Sbjct: 234 PSVVAYNCILTCLGKKGKTDKALRIFEEMKRDA-MPNLPTYNIIIGMLCKAGNVEAAFKV 292

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + ++G  PN  T   ++    + +K      I   M  K  + DG  +C++I    K
Sbjct: 293 RDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGK 352

Query: 128 IGRLKEATDYME-----------------------------------QMVTDGVQLDIVS 152
            GR+ +A    E                                   +M+  G   D++ 
Sbjct: 353 QGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLML 412

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
            NT ++   K G+ E    L +E++ +GF  D  +++ILI  L KAG  +        M 
Sbjct: 413 LNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMK 472

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLP 268
             G   +  AYN ++D   K GK++ A  + E M+         TY S+V  L K  RL 
Sbjct: 473 DQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLD 532

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            A  L      +G+ + +    +++DG    G   EA
Sbjct: 533 EAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEA 569



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 5/270 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   ++    K+R    A  + + ++   F P    Y  LI  L + G       +
Sbjct: 24  PTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLAL 83

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ + G+  N    TT+++   R  +    L +L  MK   +  D   Y   I  F K
Sbjct: 84  FNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGK 143

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G++  A  +  +M  +G+  D V+Y +++ + CK  +L+ A  + ++ME+       Y 
Sbjct: 144 VGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYA 203

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I G   AG    A   LE     G   ++ AYNCI+  LGK GK D A+ +FE M+
Sbjct: 204 YNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMK 263

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKL 273
            +D+     TY+ ++  LCKA  + +A K+
Sbjct: 264 -RDAMPNLPTYNIIIGMLCKAGNVEAAFKV 292



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL E+  +G  P   T   ++  C ++RK     ++L  M+   +      Y T+I A  
Sbjct: 13  ILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALS 72

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++G          QM   G ++++    TLI ++ +EG+++AA  LLDEM+   F+ D  
Sbjct: 73  EVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIV 132

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + + ID   K G +  A      M   G   +   Y  ++  L K  ++D A+ +FE M
Sbjct: 133 LYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQM 192

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           E    V  ++ Y++M+     A +   A  LL
Sbjct: 193 EQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLL 224



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 81/206 (39%), Gaps = 35/206 (16%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+N +L+GL K    + AL  F+ ++     P  +TY ILI GLCK  +
Sbjct: 576 MMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRK 635

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A    +E+   G  PN ITYT +                                  
Sbjct: 636 FNKAFVFWQEMQKQGLKPNTITYTAM---------------------------------- 661

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I+   K G + +A+   E+    G   D  SYN +I       +   AY L +E   +G
Sbjct: 662 -ISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKG 720

Query: 181 FECDKYTHTILIDGLCKAGNIKGARL 206
                 T   L+D L KA  ++ A +
Sbjct: 721 CSIHTKTCVALLDALHKAECLEQAAI 746


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 1/250 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    +   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKE 406

Query: 246 MEVKDSFTYS 255
           M+ +D +  S
Sbjct: 407 MQ-RDGYVPS 415



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 114/216 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y + M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      ++ M + G+
Sbjct: 377 LKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 412



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+   CK G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHA-----INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
              Y  ++D   K+G ++ A     I + E++ + D   Y++++  LC+  R   A K+L
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKIMIKENIRL-DDVAYTALISGLCQEGRSVDAEKML 369

Query: 275 LSCLKSGVRI 284
              L  G+++
Sbjct: 370 REMLSVGLKL 379



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G   E+ TY ++I   CK G + T   ++KE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYVPSVVT 418


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 141/279 (50%), Gaps = 2/279 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NGLC+ R  D A +M R + KHG  P  V+Y  L+ GLCK G    AR +
Sbjct: 378 PDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREM 437

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +    +    PNAITY+ +M    R  K     +++  M +KG+         +I +  +
Sbjct: 438 MNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQ 497

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ EA  +MEQ + +G  +++V++ T+I+ +C++  LEAA  LLD+M       D  T
Sbjct: 498 EEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVT 557

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +ID L K G I+ A      M ++G+      Y  ++ +  + G+++  + + E M 
Sbjct: 558 YTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKML 617

Query: 248 VKDS--FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +      Y+ ++  LC    L  A KLL   L++  +I
Sbjct: 618 SRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKI 656



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 142/282 (50%), Gaps = 5/282 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+N ++ G C     ++A  +   +   G  P+ ++Y  ++  LCK  R++  
Sbjct: 234 EIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEL 293

Query: 65  RWIL-KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           R ++ K L DS   P+ +TY T +    ++      LE L   + + +  D  GY  ++ 
Sbjct: 294 RLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVH 353

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +F + GR+ +A + + +M + G   D+V+Y ++IN  C+E K++ A  +L +M K G + 
Sbjct: 354 SFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKP 413

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  ++T L++GLCK GN   AR  +    +  +  N   Y+ ++    ++GK   A ++ 
Sbjct: 414 NTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLV 473

Query: 244 ESMEVKDSFTYSS----MVHNLCKAKRLPSASKLLLSCLKSG 281
             M  K  F        ++ +LC+ +++  A + +  CL +G
Sbjct: 474 REMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNG 515



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 142/304 (46%), Gaps = 6/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +++  C+    D A  +   +   G +P++VTY  +I GLC+  ++  A+ +L+++ 
Sbjct: 348 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMY 407

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN ++YT ++    +N       E+++  +   +  +   Y  ++  F + G+  
Sbjct: 408 KHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSS 467

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D + +M+  G     V  N LI   C+E K++ A   +++    G   +    T +I
Sbjct: 468 EACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVI 527

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EV 248
            G C+  +++ A   L+ M       ++  Y  I+D LGK G+I+ A  +   M     +
Sbjct: 528 HGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWI 587

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               TY +++H  C+  R+    KLL   L    +  ++A   V++ L   G   +A K+
Sbjct: 588 PTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKL 645

Query: 309 QSKI 312
             K+
Sbjct: 646 LGKV 649



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 16/291 (5%)

Query: 29  ALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTT 85
           ALR F    +   +  + + Y  +++ L K    + A+ +L+ +        P A  Y  
Sbjct: 117 ALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGY-- 174

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +M    R  K +  +  L+ M++ G   D     T I   V   RL +A  ++E+M    
Sbjct: 175 VMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVE 234

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  ++++YN LI  YC   +LE A  L+ EM  +G   DK ++  ++  LCK   IK  R
Sbjct: 235 IXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELR 294

Query: 206 LHLEYMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSM 257
           L +E M K   DSNL      YN  V  L K G  D A+      E +    D   YS++
Sbjct: 295 LLMEKMLK---DSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAI 351

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           VH+ C+  R+  A +++      G         +V++GL       +AKK+
Sbjct: 352 VHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKM 402



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 2/199 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P     N+++  LC+    D A R       +G    +V +  +I G C+   
Sbjct: 476 MIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDD 535

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L ++  S   P+ +TYTTI+    +  + +   ++   M R G+      Y T
Sbjct: 536 LEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRT 595

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  + ++GR+++    +E+M++   Q    +YN +I   C  G LE AY LL ++ +  
Sbjct: 596 VIHQYCRMGRVEDLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTA 653

Query: 181 FECDKYTHTILIDGLCKAG 199
            + D  T  +LI+     G
Sbjct: 654 SKIDANTCHMLIESYLSKG 672



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 100/272 (36%), Gaps = 13/272 (4%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           ++LN           +R F G +     P       L++ +C+   LR+A W  K  G+ 
Sbjct: 41  MVLNSFTGGYRQTEGIRRFEGGEDESRHP-------LVREICRLIELRSA-WNPKLEGEL 92

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKIGRLKE 133
            H   ++    +          ++ L       R+  Y  D   Y  ++    K    + 
Sbjct: 93  RHLLRSLKPRQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQG 152

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +  M    ++    ++  ++  Y + GKL  A   L  M+K G E D       I 
Sbjct: 153 AKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIH 212

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
            L     +  A   LE M  +    N+  YNC++       +++ A  +   M  K    
Sbjct: 213 VLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSP 272

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           D  +Y +++  LCK KR+     L+   LK  
Sbjct: 273 DKISYYTVMGFLCKEKRIKELRLLMEKMLKDS 304


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 144/283 (50%), Gaps = 5/283 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+   L P   T   +++GLCK  + + A R+F  L K   + P + TY ++I G CK G
Sbjct: 277 MVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEG 336

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +L  + + G APN  TYTT++    +   +    E+++ MK +G+  + + Y 
Sbjct: 337 KLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYN 396

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I  F K G+++EA   +    + G+ LD V+Y  LI  +CK+G +  A  L  +M ++
Sbjct: 397 AIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEK 456

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D +T+T +I   C+   ++ ++   +    IG     + Y  ++    + GK+  A
Sbjct: 457 SCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSA 516

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           + VFE M     + DS TY +++ +LCK  RL  A  L  + L
Sbjct: 517 LKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETML 559



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 148/294 (50%), Gaps = 11/294 (3%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +AT  +++   C+     N   +FR + + G  P +V Y+  I GLC+ G ++ A  +L+
Sbjct: 216 SATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLE 275

Query: 70  ELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           E+   G  PN  T+T+++    K  +  R ++L L+++   K   Y  +   Y  +I  +
Sbjct: 276 EMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLV---KSSSYKPNVHTYTVMIGGY 332

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L  A   + +MV  G+  +  +Y TLI+ +CK G  + A+ L+++M+ +GF  + 
Sbjct: 333 CKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNI 392

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+  +I G CK G I+ A   L      G   +   Y  ++    K G I  A+++F+ 
Sbjct: 393 YTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQ 452

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M  K    D  TY++++   C+ +++  + +L   CL  G+   K    +++ G
Sbjct: 453 MAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAG 506



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 11/279 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G + P   +F  ++ G C+    + A  +   +   GF  +  T  ++++  C+ GR R 
Sbjct: 175 GGVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRN 234

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              + + + + G  PN + Y+  +         K    +L  M  KG   + + + ++I 
Sbjct: 235 VTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLID 294

Query: 124 AFVKIGRLKEATDYMEQMV-TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
              KIG ++ A     ++V +   + ++ +Y  +I  YCKEGKL  A +LL  M +QG  
Sbjct: 295 GLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLA 354

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHA 239
            +  T+T LI G CK G+   A    E MNK+   GF  N+  YN I+    K GKI  A
Sbjct: 355 PNTNTYTTLIHGHCKGGSFDRA---FELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEA 411

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
             V      +    D  TY+ ++   CK   +  A  L 
Sbjct: 412 YKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLF 450



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTARW 66
           P    ++  ++GLC+  Y   A  +   +   G  P + T+  LI GLCK G + R  R 
Sbjct: 249 PNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRL 308

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            LK +  S + PN  TYT ++    +  K      +L  M  +G   +   Y T+I    
Sbjct: 309 FLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHC 368

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G    A + M +M  +G   +I +YN +I  +CK+GK++ AY +L     QG   DK 
Sbjct: 369 KGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKV 428

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+TILI   CK G+I  A    + M +     ++  Y  I+    +  +++ +  +F+  
Sbjct: 429 TYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKC 488

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                V    TY+SM+   C+  +L SA K+    ++ G
Sbjct: 489 LSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHG 527



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 11/296 (3%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIK-GLCKAGRLRTARWILKELGDS--GHAPNAITYT 84
            A  M   L+ HG    + T N +++ GL   G    AR     +  +  G  P+  ++ 
Sbjct: 126 EAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAHAREAFDGMARAAGGVRPDHRSFR 185

Query: 85  TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
            ++  C R  +++    +L+AM  +G+  D      V+ AF + GR +  TD   +M   
Sbjct: 186 ALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEM 245

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G   ++V+Y+  I+  C+ G ++ A+ +L+EM  +G + + YTHT LIDGLCK G ++ A
Sbjct: 246 GTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERA 305

Query: 205 -RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----NVFESMEVKDSFTYSSMVH 259
            RL L+ +    +  N+  Y  ++    K+GK+  A      + E     ++ TY++++H
Sbjct: 306 FRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIH 365

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
             CK      A +L+      G         A++ G    G  +EA K+   +RMA
Sbjct: 366 GHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKV---LRMA 418



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 42/194 (21%)

Query: 129 GRLKEATDYMEQMVTDGVQL--------------------------------------DI 150
           GRL+EA D + ++ + G+ L                                      D 
Sbjct: 122 GRLREAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAHAREAFDGMARAAGGVRPDH 181

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            S+  L+   C+EG+ E A  LL  M  QGF  D  T T+++   C+ G  +        
Sbjct: 182 RSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRR 241

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M+++G   N+  Y+  +D L + G +  A +V E M  K    + +T++S++  LCK   
Sbjct: 242 MSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGW 301

Query: 267 LPSASKLLLSCLKS 280
           +  A +L L  +KS
Sbjct: 302 MERAFRLFLKLVKS 315



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 112/267 (41%), Gaps = 44/267 (16%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ I++   CK  +   AL +F+ + +    P++ TY  +I   C+  ++  ++ +  + 
Sbjct: 429 TYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKC 488

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   TYT+++                             GYC       ++G+L
Sbjct: 489 LSIGLVPTKQTYTSMIA----------------------------GYC-------RLGKL 513

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKYTHTI 190
             A    E+MV  G   D ++Y  LI+  CKE +LE A  L + M +K    CD  T   
Sbjct: 514 TSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCD-VTRVT 572

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----NVFESM 246
           L    C+   I  A   + +++++         + +V +L   G +D A     NV +  
Sbjct: 573 LAYEYCRRDKITIA---VSFLDRLDKRQQAHTADALVRKLSTVGNLDAASLFLKNVLDKH 629

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKL 273
              D  TY+S +++  ++ R   AS++
Sbjct: 630 YAVDHATYTSFINSCYESNRYALASEI 656



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 7/155 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  M+ G C+     +AL++F  + +HG +P+ +TY  LI  LCK  RL  AR
Sbjct: 493 LVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEAR 552

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM--KRKGYTFDGFGYCTVIA 123
            + + + D    P  +T  T+     R  K  + +  L  +  +++ +T D      ++ 
Sbjct: 553 ALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKRQQAHTADA-----LVR 607

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
               +G L  A+ +++ ++     +D  +Y + IN
Sbjct: 608 KLSTVGNLDAASLFLKNVLDKHYAVDHATYTSFIN 642



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 38/202 (18%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++   C+ R  + + ++F      G VP   TY  +I G C+ G+L +A  +
Sbjct: 460 PDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKV 519

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +   G  P++ITY  +                                   I++  K
Sbjct: 520 FERMVQHGCLPDSITYGAL-----------------------------------ISSLCK 544

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             RL+EA    E M+   +    V+  TL   YC+  K+  A   LD ++K+      +T
Sbjct: 545 ESRLEEARALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKRQ---QAHT 601

Query: 188 HTILIDGLCKAGNIKGARLHLE 209
              L+  L   GN+  A L L+
Sbjct: 602 ADALVRKLSTVGNLDAASLFLK 623


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 152/306 (49%), Gaps = 6/306 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + TF +++ G C+      AL +   ++K   VP  V+Y  +I GLC    L  A  +
Sbjct: 401 PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKL 460

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++  SG  PN + Y+ ++       + +    +L  M   G   D F Y  +I+   K
Sbjct: 461 LEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 520

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+++EA+ Y+ ++   G++ D V++   I  Y K GK+  A    DEM   G   +   
Sbjct: 521 AGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 580

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LI+G  KAGN+  A      ++ +G   +++  +  +  L K+G++  A+ VF  ++
Sbjct: 581 YTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 640

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLS-CLKSGVRILKSAQKAVVDGLRHSGCR 302
               V D FTYSS++   CK   +  A +L    CLK G+        A+VDGL  SG  
Sbjct: 641 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK-GIAPNIFIYNALVDGLCKSGDI 699

Query: 303 REAKKI 308
           + A+K+
Sbjct: 700 QRARKL 705



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 3/303 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF   + G  K      A + F  +  HG +P    Y +LI G  KAG L  A 
Sbjct: 539 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 598

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + L   G  P+  T +  +    +N + +  L++ S +K KG   D F Y ++I+ F
Sbjct: 599 SIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 658

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +++A +  ++M   G+  +I  YN L++  CK G ++ A  L D M ++G E D 
Sbjct: 659 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 718

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ +IDG CK+ N+  A      M   G   +   YN +V    K+G ++ A+N+F  
Sbjct: 719 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 778

Query: 246 MEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           M  K    + ++++++   CK+ ++  AS+L    +   +         V+D    +G  
Sbjct: 779 MLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKM 838

Query: 303 REA 305
            EA
Sbjct: 839 EEA 841



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 146/312 (46%), Gaps = 5/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C  + P    +N +++ L K    + A      +Q  G  P+ VT+   I G  K G+
Sbjct: 499 MSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGK 558

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     E+ D G  PN   YT ++   F+       L I   +   G   D      
Sbjct: 559 MTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSA 618

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I   +K GR++EA     ++   G+  D+ +Y++LI+ +CK+G++E A+ L DEM  +G
Sbjct: 619 FIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKG 678

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + + +  L+DGLCK+G+I+ AR   + M + G + +   Y+ ++D   K   +  A 
Sbjct: 679 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 738

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M  K     SF Y+++VH  CK   +  A  L    L+ G     S    ++DG 
Sbjct: 739 SLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN-TLIDGY 797

Query: 297 RHSGCRREAKKI 308
             S   +EA ++
Sbjct: 798 CKSCKIQEASQL 809



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 146/339 (43%), Gaps = 45/339 (13%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   ++  M+NGLC  +    A ++   +   G  P +V Y+ILI      GR+  A
Sbjct: 433 NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEA 492

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +L  +  SG AP+   Y  I+ C  +  K +     L  ++ +G   D   +   I  
Sbjct: 493 RRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILG 552

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY------------------------ 160
           + K G++ EA  Y ++M+  G+  +   Y  LIN +                        
Sbjct: 553 YSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPD 612

Query: 161 -----------CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHL 208
                       K G+++ A  +  E++++G   D +T++ LI G CK G ++ A  LH 
Sbjct: 613 VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHD 672

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           E   K G   N+  YN +VD L K G I  A  +F+ M  K    DS TYS+M+   CK+
Sbjct: 673 EMCLK-GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKS 731

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           + +  A  L       GV+        V + L H  C+ 
Sbjct: 732 ENVAEAFSLFHEMPSKGVQ----PHSFVYNALVHGCCKE 766



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 4/306 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +++++ G+C+    D A+ + R + + G VP   TY I+  GLC+A R+  A+
Sbjct: 259 LNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAK 318

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+  +G  P+    + ++    R       L I   M   G   +   Y  +I   
Sbjct: 319 LTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGL 378

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++++A + ++ MVT G + +  ++  LI  YC+E  +  A  LLDEMEK+      
Sbjct: 379 CKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA 438

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  +I+GLC   ++  A   LE M   G   N+  Y+ ++     +G+I+ A  + + 
Sbjct: 439 VSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDG 498

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D F Y++++  L KA ++  AS  LL     G++       A + G   +G 
Sbjct: 499 MSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGK 558

Query: 302 RREAKK 307
             EA K
Sbjct: 559 MTEAAK 564



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 132/258 (51%), Gaps = 5/258 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            + P +  +N +++G CK    + A+ +FR + + GF   L ++N LI G CK+ +++ A 
Sbjct: 749  VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEAS 807

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + +E+      P+ +TYTT++    +  K +    +   M+ +    D   Y +++  +
Sbjct: 808  QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGY 867

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             K+G+  E     E+MV  GV+ D V+Y  +I  +CKE  L  A+ L DE+  +G     
Sbjct: 868  NKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKG 927

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              H +LI  LCK  ++  A   L+ M ++G   +L A N +V    + GK+D A  VFE 
Sbjct: 928  TIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEG 987

Query: 246  ME----VKDSFTYSSMVH 259
            ++    V D+ T   +V+
Sbjct: 988  VKSLGLVPDTTTLIDLVN 1005



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 5/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++GLCK+     A ++F G+ + G  P+ VTY+ +I G CK+  +  A 
Sbjct: 679 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 738

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P++  Y  ++  C +    +  + +   M +KG+      + T+I  +
Sbjct: 739 SLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGY 797

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +++EA+   ++M+   +  D V+Y T+I+ +CK GK+E A LL  EM+++    D 
Sbjct: 798 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 857

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T L+ G  K G         E M   G   +   Y  ++    K+  +  A  + + 
Sbjct: 858 VTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDE 917

Query: 246 MEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           +  K   T    +  ++  LCK + L  ASKLL    + G++   +A   +V     +G 
Sbjct: 918 VVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGK 977

Query: 302 RREAKKIQSKIR 313
             EA ++   ++
Sbjct: 978 MDEATRVFEGVK 989



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 130/310 (41%), Gaps = 4/310 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
              F+I+++   +    D A  +F   +    +  L+  N L+K L K G +     +  
Sbjct: 158 PVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYN 217

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + D+    +  TYT ++    +    +    +L  M  KG   + F Y  VI    ++G
Sbjct: 218 GMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVG 277

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            + EA +    M   G+  +  +Y  +    C+  ++  A L  +EM+K G + D    +
Sbjct: 278 DIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACS 337

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
            LIDG  + G+I       + M   G   NL  YN ++  L K GK++ A  + + M   
Sbjct: 338 ALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTL 397

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               +S T+  ++   C+   +  A +LL    K  +     +  A+++GL H      A
Sbjct: 398 GCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLA 457

Query: 306 KKIQSKIRMA 315
            K+  K+  +
Sbjct: 458 NKLLEKMTFS 467



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 93/205 (45%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI   + P   T+  +++  CK    + A  +F+ +Q+   + + VTY  L+ G  K G+
Sbjct: 813  MIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQ 872

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                  + +++   G  P+ +TY  ++    +        ++   +  KG    G  +  
Sbjct: 873  SSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDL 932

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I A  K   L EA+  +++M   G++  + + NTL+  + + GK++ A  + + ++  G
Sbjct: 933  LITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLG 992

Query: 181  FECDKYTHTILIDGLCKAGNIKGAR 205
               D  T   L++G     + + AR
Sbjct: 993  LVPDTTTLIDLVNGNLNDTDSEDAR 1017


>gi|326505288|dbj|BAK03031.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326529675|dbj|BAK04784.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 597

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 148/296 (50%), Gaps = 4/296 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L +     +A+R+F  ++  G  P+      L+  L +A    TAR +   +G +G
Sbjct: 115 LLLALAQGGRAGDAVRVFDHMRAEGLAPDAHACTALLTSLARARMTATARRVFDGMGRAG 174

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            A N   Y  ++  C +         +++ M   G   D F + T IA +V+ G   EA 
Sbjct: 175 VAMNTHVYNAMLHVCLKAGDAARAEALMTRMDATGVPLDLFSFNTAIALYVRKGMQYEAM 234

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              ++M  DGV+ DIV++NT+I+  CKEG+++ A  L  +M   G E D  T+T L+DG 
Sbjct: 235 CVRDRMANDGVEADIVTWNTVIHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGY 294

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           C+AG++  A      M   G    +  YN I+ +L +DGK+     +   M+ +    D 
Sbjct: 295 CRAGDVGEAMNLRAVMEARGMLPGVATYNAIIRKLCEDGKMKEVNGLLSEMDERKVQADH 354

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
            T ++++++  K   +PSA K+    ++SG+++ +   KA++ G   +    EAK+
Sbjct: 355 VTCNTLINSYSKKGDMPSACKVKTRMMESGLQLDQFTYKALIHGFSKAKQLDEAKE 410



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 4/239 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G   ++VT+N +I G+CK GR++ A  + +++  +G  P+ +TYTT++    R       
Sbjct: 244 GVEADIVTWNTVIHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGYCRAGDVGEA 303

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           + + + M+ +G       Y  +I    + G++KE    + +M    VQ D V+ NTLIN 
Sbjct: 304 MNLRAVMEARGMLPGVATYNAIIRKLCEDGKMKEVNGLLSEMDERKVQADHVTCNTLINS 363

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           Y K+G + +A  +   M + G + D++T+  LI G  KA  +  A+  L  M   GF  N
Sbjct: 364 YSKKGDMPSACKVKTRMMESGLQLDQFTYKALIHGFSKAKQLDEAKEALFEMMGAGFSPN 423

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
              ++ +VD   K    D  + + + +  +    D   Y S++  LCK + +  A K+L
Sbjct: 424 YSVFSWLVDGFYKRNNADAVLLIPDELMKRGLPPDKSVYRSLIRRLCKKRLVDLAQKVL 482



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 130/299 (43%), Gaps = 8/299 (2%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +  D   CTA    +L  L + R T  A R+F G+ + G       YN ++    KAG  
Sbjct: 140 LAPDAHACTA----LLTSLARARMTATARRVFDGMGRAGVAMNTHVYNAMLHVCLKAGDA 195

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  ++  +  +G   +  ++ T +    R       + +   M   G   D   + TV
Sbjct: 196 ARAEALMTRMDATGVPLDLFSFNTAIALYVRKGMQYEAMCVRDRMANDGVEADIVTWNTV 255

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    K GR+KEA+     MV  G++ D V+Y TL++ YC+ G +  A  L   ME +G 
Sbjct: 256 IHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGYCRAGDVGEAMNLRAVMEARGM 315

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
                T+  +I  LC+ G +K     L  M++    ++    N +++   K G +  A  
Sbjct: 316 LPGVATYNAIIRKLCEDGKMKEVNGLLSEMDERKVQADHVTCNTLINSYSKKGDMPSACK 375

Query: 242 V----FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           V     ES    D FTY +++H   KAK+L  A + L   + +G     S    +VDG 
Sbjct: 376 VKTRMMESGLQLDQFTYKALIHGFSKAKQLDEAKEALFEMMGAGFSPNYSVFSWLVDGF 434



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 121/267 (45%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++G+CK      A ++ R +   G  P+ VTY  L+ G C+AG +  A  +   +
Sbjct: 251 TWNTVIHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGYCRAGDVGEAMNLRAVM 310

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   TY  I++    + K K    +LS M  +    D     T+I ++ K G +
Sbjct: 311 EARGMLPGVATYNAIIRKLCEDGKMKEVNGLLSEMDERKVQADHVTCNTLINSYSKKGDM 370

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A     +M+  G+QLD  +Y  LI+ + K  +L+ A   L EM   GF  +    + L
Sbjct: 371 PSACKVKTRMMESGLQLDQFTYKALIHGFSKAKQLDEAKEALFEMMGAGFSPNYSVFSWL 430

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +DG  K  N     L  + + K G   +   Y  ++ RL K   +D A  V   M+ K  
Sbjct: 431 VDGFYKRNNADAVLLIPDELMKRGLPPDKSVYRSLIRRLCKKRLVDLAQKVLHQMQGKGL 490

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D   Y+S+ +    A +L +AS  L
Sbjct: 491 EADCLVYASLAYAQLTAGKLAAASDTL 517



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 120/263 (45%), Gaps = 2/263 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T+  +++G C+      A+ +   ++  G +P + TYN +I+ LC+ G+
Sbjct: 275 MVAAGIEPDTVTYTTLVDGYCRAGDVGEAMNLRAVMEARGMLPGVATYNAIIRKLCEDGK 334

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++    +L E+ +     + +T  T++    +        ++ + M   G   D F Y  
Sbjct: 335 MKEVNGLLSEMDERKVQADHVTCNTLINSYSKKGDMPSACKVKTRMMESGLQLDQFTYKA 394

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K  +L EA + + +M+  G   +   ++ L++ + K    +A  L+ DE+ K+G
Sbjct: 395 LIHGFSKAKQLDEAKEALFEMMGAGFSPNYSVFSWLVDGFYKRNNADAVLLIPDELMKRG 454

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              DK  +  LI  LCK   +  A+  L  M   G +++   Y  +       GK+  A 
Sbjct: 455 LPPDKSVYRSLIRRLCKKRLVDLAQKVLHQMQGKGLEADCLVYASLAYAQLTAGKLAAAS 514

Query: 241 NVFESMEVKDSFTYSSMVHN-LC 262
           +    M  K   + +  ++N LC
Sbjct: 515 DTLNDM-AKKQLSVTPQIYNCLC 536



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 62/152 (40%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++G  K +  D A      +   GF P    ++ L+ G  K         I  EL
Sbjct: 391 TYKALIHGFSKAKQLDEAKEALFEMMGAGFSPNYSVFSWLVDGFYKRNNADAVLLIPDEL 450

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+   Y ++++   + R   L  ++L  M+ KG   D   Y ++  A +  G+L
Sbjct: 451 MKRGLPPDKSVYRSLIRRLCKKRLVDLAQKVLHQMQGKGLEADCLVYASLAYAQLTAGKL 510

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
             A+D +  M    + +    YN L   Y  E
Sbjct: 511 AAASDTLNDMAKKQLSVTPQIYNCLCTSYGDE 542



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 4/194 (2%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  + GR  +A    + M  +G+  D  +   L+    +      A  + D M + G
Sbjct: 115 LLLALAQGGRAGDAVRVFDHMRAEGLAPDAHACTALLTSLARARMTATARRVFDGMGRAG 174

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + + +  ++    KAG+   A   +  M+  G   +L ++N  +    + G    A+
Sbjct: 175 VAMNTHVYNAMLHVCLKAGDAARAEALMTRMDATGVPLDLFSFNTAIALYVRKGMQYEAM 234

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V + M       D  T+++++H +CK  R+  AS+L    + +G+         +VDG 
Sbjct: 235 CVRDRMANDGVEADIVTWNTVIHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGY 294

Query: 297 RHSGCRREAKKIQS 310
             +G   EA  +++
Sbjct: 295 CRAGDVGEAMNLRA 308


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 154/313 (49%), Gaps = 46/313 (14%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-----HGFVPELVTYNILIKGLCKAGRL 61
           +P   T+N ++NGLCK    D AL +F  ++K     HG  P++++Y+ +I  LCKA R+
Sbjct: 177 SPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRV 236

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A    K +   G APN +TY++++    +  +    LE+L  MK KG+  +   +  +
Sbjct: 237 DKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAM 296

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           + A  K    ++A  + E+++  G + ++V+YN  ++  CK G+++ AY +L EM +   
Sbjct: 297 LHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKV 356

Query: 182 ECDKYTHTILIDGLCKAGNIKGA------------------------------------R 205
             D  T++ +IDG CKAG +  A                                    R
Sbjct: 357 TPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFR 416

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
           +H + +N  GF   L+ YN ++D +     ++ A+ ++  M+ K    D  TY+ ++  L
Sbjct: 417 VHEDMVNA-GFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCL 475

Query: 262 CKAKRLPSASKLL 274
           C+A+R+  A + L
Sbjct: 476 CRARRVDEAKEFL 488



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 10/276 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +  ++NG CK    D A  +   +++ G   +++ ++ LI+GLC+ GR+  A   
Sbjct: 109 PNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQ 168

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-----GYTFDGFGYCTVI 122
            K +G+   +PN ITY T++    +  +    LE+   M+++     G   D   Y TVI
Sbjct: 169 FKSMGEEC-SPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVI 227

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            A  K  R+ +A +Y ++M   G   ++V+Y++LI+  CK  +      LL  M+++GF 
Sbjct: 228 DALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFG 287

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA--- 239
            +      ++  L K    + A    E + K G   N+  YN  V  L K G++D A   
Sbjct: 288 INIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRI 347

Query: 240 -INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + + ES    D  TYSS++   CKA R+  A  + 
Sbjct: 348 LLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVF 383



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 144/298 (48%), Gaps = 10/298 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T  ++LN   K +  + A R+ +   +    P  + Y  +I G CKAG++  A  +L E+
Sbjct: 78  TCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEM 137

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G   + + ++T+++   R  +    LE   +M  +  + +   Y TV+    K  R+
Sbjct: 138 KERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEEC-SPNVITYNTVVNGLCKANRI 196

Query: 132 KEATDYMEQM-----VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            EA +  + M      + G + D++SY+T+I+  CK  +++ AY     M   G   +  
Sbjct: 197 DEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVV 256

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE-- 244
           T++ LIDGLCK          L +M + GF  N+  +N ++  L K+ + + A   FE  
Sbjct: 257 TYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 316

Query: 245 --SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             S +  +  TY+  VH LCKA R+  A ++LL  ++S V        +++DG   +G
Sbjct: 317 LKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAG 374



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 151/329 (45%), Gaps = 13/329 (3%)

Query: 2   ICGDLTPCTATFNIMLNG--LCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKA 58
           +C DL    +T    + G  L +    D A   F+    K GF     T  +L+    KA
Sbjct: 30  LCRDLAGYASTVTPEVAGRVLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKA 89

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
            R   A  +LKE  +    PN I YTT++    +  +     E+L  MK +G   D   +
Sbjct: 90  KRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLH 149

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            T+I    + GR+ EA +  + M  +    ++++YNT++N  CK  +++ A  L D+MEK
Sbjct: 150 STLIQGLCRKGRIDEALEQFKSM-GEECSPNVITYNTVVNGLCKANRIDEALELFDDMEK 208

Query: 179 Q-----GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
           +     G E D  +++ +ID LCKA  +  A  + + M  +G   N+  Y+ ++D L K 
Sbjct: 209 RYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKV 268

Query: 234 GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            +    + +   M+ K    +   +++M+H L K      A +     LKSG +      
Sbjct: 269 DRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTY 328

Query: 290 KAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
              V GL  +G   EA +I  ++  +K++
Sbjct: 329 NVAVHGLCKAGRVDEAYRILLEMVESKVT 357



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 143/320 (44%), Gaps = 36/320 (11%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN ML+ L KN   + A + F  L K G  P +VTYN+ + GLCKAGR+  A  IL E+ 
Sbjct: 293 FNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMV 352

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +S   P+ ITY++I+    +  +     ++ + M           + T++  F +  + +
Sbjct: 353 ESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSR 412

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA    E MV  G    + +YN L++  C    +E+A  +  +M+++  + D  T+  LI
Sbjct: 413 EAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLI 472

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----- 247
             LC+A  +  A+  L+ M       N    + +V+ L K G++D A +V +++      
Sbjct: 473 QCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQ 532

Query: 248 -------------------------------VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
                                          V D+ TYS  V  +CKA +   A +++  
Sbjct: 533 PLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQ 592

Query: 277 CLKSGVRILKSAQKAVVDGL 296
            +  GVR  +    AV+  L
Sbjct: 593 MVLKGVRPDEGTYVAVLRSL 612



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 7/274 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T++ +++G CK    D A  +F  +  H  +P  VT+  L+ G  +  +
Sbjct: 351 MVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKK 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R A  + +++ ++G  P   TY  +M C       +  LEI   MKRK    D   Y  
Sbjct: 411 SREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAP 470

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    +  R+ EA ++++ M  D V  +    + L+ + CK+G+++ A  +LD + + G
Sbjct: 471 LIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVG 530

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T  IL++ L      + A    + +   GF ++   Y+  V  + K GK D A+
Sbjct: 531 CQPLGETFKILVEELYLRKKWEAAS---KLLRSPGFVADAATYSLCVAEICKAGKPDEAV 587

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
            V E M +K    D  TY +++ +LC   R+ SA
Sbjct: 588 EVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESA 621



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 125/262 (47%), Gaps = 10/262 (3%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL-- 71
           + ++ GLC+    D AL  F+ + +    P ++TYN ++ GLCKA R+  A  +  ++  
Sbjct: 150 STLIQGLCRKGRIDEALEQFKSMGEEC-SPNVITYNTVVNGLCKANRIDEALELFDDMEK 208

Query: 72  ---GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
                 G  P+ I+Y+T++    + ++     E    M+  G   +   Y ++I    K+
Sbjct: 209 RYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKV 268

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
            R  E  + +  M   G  ++I+ +N +++   K  + E A    + + K G + +  T+
Sbjct: 269 DRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTY 328

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            + + GLCKAG +  A   L  M +     ++  Y+ I+D   K G++D A +VF  M V
Sbjct: 329 NVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMV 388

Query: 249 KD----SFTYSSMVHNLCKAKR 266
            +      T+ +++H   + K+
Sbjct: 389 HECIPHPVTFMTLLHGFSEHKK 410



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 138/309 (44%), Gaps = 39/309 (12%)

Query: 7   TPCTATFNIMLNGLC-----------------------------------KNRYTDNALR 31
            P   T++ +++GLC                                   KN   + A +
Sbjct: 252 APNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQ 311

Query: 32  MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
            F  L K G  P +VTYN+ + GLCKAGR+  A  IL E+ +S   P+ ITY++I+    
Sbjct: 312 FFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFC 371

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           +  +     ++ + M           + T++  F +  + +EA    E MV  G    + 
Sbjct: 372 KAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQ 431

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YN L++  C    +E+A  +  +M+++  + D  T+  LI  LC+A  +  A+  L+ M
Sbjct: 432 TYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVM 491

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES-MEV---KDSFTYSSMVHNLCKAKRL 267
                  N    + +V+ L K G++D A +V ++ +EV       T+  +V  L   K+ 
Sbjct: 492 EADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKW 551

Query: 268 PSASKLLLS 276
            +ASKLL S
Sbjct: 552 EAASKLLRS 560



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 114/285 (40%), Gaps = 33/285 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   TF  +L+G  +++ +  A R+   +   GF+P L TYN+L+  +C A  
Sbjct: 386 MMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADS 445

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A  I  ++      P+  TY  +++C  R R+     E L  M+      +G     
Sbjct: 446 VESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHA 505

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQ--------------------------------L 148
           ++    K G + EA   ++ +V  G Q                                 
Sbjct: 506 LVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVA 565

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D  +Y+  +   CK GK + A  ++++M  +G   D+ T+  ++  LC    ++ A    
Sbjct: 566 DAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEF 625

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT 253
           E M   G    L  Y  ++         D A  +FE+M V   FT
Sbjct: 626 EKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAM-VAAGFT 669



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  +L  LC     ++A+  F  +   G  P LVTY +LI   C A  
Sbjct: 593 MVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADM 652

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
              A  I + +  +G  P A T  T +  C R+  Y+
Sbjct: 653 ADEAFRIFEAMVAAGFTPQAQTMRT-LSSCLRDAGYQ 688


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 39/347 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P       +++GLCK      A+ ++  L   GFVP +VT N LI GLCKAG 
Sbjct: 457 MLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGN 516

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTF-- 113
           ++    +L+++ + G   + ITY T++  C +  K K G E+   M +KG     YTF  
Sbjct: 517 MQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNL 576

Query: 114 ----------------------------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                                       + + Y  +I  + K  +++E  + + ++V+  
Sbjct: 577 LLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKK 636

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++L+ V YN+LI  YC  G + AA+ L D+M+ +G      T++ L+ GLC  G +  A+
Sbjct: 637 LELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAK 696

Query: 206 LHLEYMNKIGFDSNLEAYNCIV---DRLGKDGKIDHAINVFESMEV-KDSFTYSSMVHNL 261
             L+ M K G   N+  Y  I+    +LG+  K++  +    S  +  + FTY+ M+   
Sbjct: 697 HLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGF 756

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           CK  +   A+KLL    + G+        A  +GL   G   EA K+
Sbjct: 757 CKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKV 803



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 131/262 (50%), Gaps = 4/262 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN++L+GLC     D A R++   +K+G+VP + TY ++I G CKA +
Sbjct: 562 MVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANK 621

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L EL       N++ Y ++++    N        +   MK +G       Y +
Sbjct: 622 VEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSS 681

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++     IG + +A   +++M  +G+  ++V Y T+I  Y K G++    ++L EM    
Sbjct: 682 LMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHN 741

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +K+T+TI+IDG CK G  K A   L  M + G   +   YN   + L K+GK++ A 
Sbjct: 742 IHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAF 801

Query: 241 NVFESMEVK----DSFTYSSMV 258
            V + M       D  TY++++
Sbjct: 802 KVCDEMSSGAVCLDEITYTTLI 823



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 10/311 (3%)

Query: 1   MIC-GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
            IC G + P    F+ M+N  CK    D+A+ +F  ++K G  P +VTYN +I GLCK+G
Sbjct: 246 FICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSG 305

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           RL  A    +++     +P+ ITY+  +    +  K      +L  M   G+  +   Y 
Sbjct: 306 RLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYN 365

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I  + K+G + EA    + M++ G+  + V+ N+LI  +CK  ++  A  +L+EM  +
Sbjct: 366 TLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGR 425

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   ++ + +++I+ LC       A   +  M       N      +V  L K GK   A
Sbjct: 426 GLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEA 485

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + ++  +     V +  T ++++H LCKA  +    KLL   L+ G+   +     ++  
Sbjct: 486 VELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLI-- 543

Query: 296 LRHSGCRREAK 306
              SGC +E K
Sbjct: 544 ---SGCCKEGK 551



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 142/315 (45%), Gaps = 39/315 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++GLCK+   D A R    + K    P L+TY++ I GL K  ++  A 
Sbjct: 287 VAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEAN 346

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKE+ + G  PN + Y T++    +       L+I   M  KG + +     ++I  F
Sbjct: 347 CVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGF 406

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC------------------------ 161
            K  ++ +A + +E+M+  G+ ++  S++ +IN  C                        
Sbjct: 407 CKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPND 466

Query: 162 -----------KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                      K GK   A  L   +  +GF  +  T   LI GLCKAGN++     L  
Sbjct: 467 GLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRD 526

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M + G   +   YN ++    K+GK+     + E M  K    D +T++ ++H LC A +
Sbjct: 527 MLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADK 586

Query: 267 LPSASKLLLSCLKSG 281
           +  AS+L   C K+G
Sbjct: 587 IDEASRLWHECKKNG 601



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L     +F++++N LC       AL   R +      P       L+ GLCKAG+
Sbjct: 422 MIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGK 481

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +   L   G  PN +T   ++    +    +  L++L  M  +G  FD   Y T
Sbjct: 482 QGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNT 541

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   K G++KE  +  E+MV  G+Q DI ++N L++  C   K++ A  L  E +K G
Sbjct: 542 LISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNG 601

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  + YT+ ++IDG CKA  ++     L  +     + N   YN ++     +G ++ A 
Sbjct: 602 YVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAF 661

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + M+ +       TYSS++H LC    +  A  LL    K G+
Sbjct: 662 RLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGL 707



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 91/185 (49%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +  +N ++   C N   + A R+   ++  G +    TY+ L+ GLC  G +  A+ +L 
Sbjct: 641 SVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLD 700

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G  PN + YTTI+    +  +      +L  M       + F Y  +I  F K+G
Sbjct: 701 EMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLG 760

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           + KEA   + +M   G+  D V+YN   N  CKEGK+E A+ + DEM       D+ T+T
Sbjct: 761 KTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYT 820

Query: 190 ILIDG 194
            LIDG
Sbjct: 821 TLIDG 825



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 130/288 (45%), Gaps = 4/288 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A  +F  L K G  P L T   L+  L KA  L+ +  +   +   G  P+   ++T++ 
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              +  +    + + S M++ G   +   Y  +I    K GRL EA  + E+MV + V  
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
            +++Y+  IN   K  K++ A  +L EM + GF  ++  +  LIDG CK GNI  A    
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIR 384

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           + M   G   N    N ++    K  +I  A NV E M  +    +  ++S +++ LC  
Sbjct: 385 DDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLK 444

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            R  +A   +   L   +R        +V GL  +G + EA ++  ++
Sbjct: 445 FRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRL 492



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 133/307 (43%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T   +L+ L K      +  ++  +   G +P++  ++ +I   CK  R   A 
Sbjct: 217 LFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAI 276

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G APN +TY  I+    ++ +          M ++  +     Y   I   
Sbjct: 277 GLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGL 336

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K+ ++ EA   +++M   G   + V YNTLI+ YCK G +  A  + D+M  +G   + 
Sbjct: 337 IKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNS 396

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   LI G CK+  I  A   LE M   G   N  +++ +++ L    +   A++    
Sbjct: 397 VTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIRE 456

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M ++    +    +++V  LCKA +   A +L    L  G         A++ GL  +G 
Sbjct: 457 MLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGN 516

Query: 302 RREAKKI 308
            +E  K+
Sbjct: 517 MQETLKL 523



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+ IM++G CK   T  A ++   + + G +P+ VTYN    GLCK G++  A
Sbjct: 741 NIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEA 800

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFR 92
             +  E+       + ITYTT++  C +
Sbjct: 801 FKVCDEMSSGAVCLDEITYTTLIDGCHQ 828


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 149/299 (49%), Gaps = 7/299 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +LNGLC     D  + ++  +   G  P + TYN++I  L K+G+   A 
Sbjct: 128 LEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEAL 187

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             LK++   G  PN + Y+T++   C R +  +    +   M  KG T + + Y +++  
Sbjct: 188 GFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDE-ARSVFDLMVSKGCTPNVYTYTSLMNG 246

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + KI R++EA   +++ +  G+  DIV++ T+I+  C+ G+  AA  L   +   G   +
Sbjct: 247 YCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPN 306

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ +L+DGLCK GN++ A    + M +     NL  Y  ++D L K GKI     +F 
Sbjct: 307 IMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFS 366

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG-LRH 298
            +  +    + +TY+++V  LCK   +  A KL     + G    K A   ++ G L+H
Sbjct: 367 RLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQH 425



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 146/306 (47%), Gaps = 4/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           + +I++N  C     D  L +   + K G  P +VT+  L+ GLC  G++     +  ++
Sbjct: 99  SLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDM 158

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN  TY  I+    ++ K    L  L  M++ G   +   Y T+I  +   G++
Sbjct: 159 LVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQM 218

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA    + MV+ G   ++ +Y +L+N YCK  ++E A  LLDE  ++G   D  T T +
Sbjct: 219 DEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTI 278

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---V 248
           I GLC+AG    A+    Y+   G   N+  Y  ++D L K G ++ A  +F+ M+   V
Sbjct: 279 ISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTV 338

Query: 249 KDSFT-YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           K +   Y+ ++ +LCK  ++    +L    +  G++       A+V  L   G   EA K
Sbjct: 339 KPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHK 398

Query: 308 IQSKIR 313
           +  K+ 
Sbjct: 399 LFRKME 404



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 135/280 (48%), Gaps = 5/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N+++N L K+   + AL   + ++K G VP +V Y+ LI G C  G+
Sbjct: 158 MLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQ 217

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +   +   G  PN  TYT++M    +  + +  +++L    RKG   D   + T
Sbjct: 218 MDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTT 277

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR   A      +   G   +I++Y  L++  CK G LE A+ L  EM++  
Sbjct: 278 IISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRST 337

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +   +TILID LCK G IK  +     +   G   N+  Y  +V  L K+G I  A 
Sbjct: 338 VKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAH 397

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
            +F  ME      D   Y+ ++    + K  PS ++ L+ 
Sbjct: 398 KLFRKMEEDGCTPDKCAYNVIIQGFLQHKD-PSMARQLVE 436



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 112/219 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   T+  ++NG CK    + A+++     + G VP++VT+  +I GLC+AGR
Sbjct: 228 MVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGR 287

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ + + +   GH PN +TY  ++    ++   +    +   M+R     +   Y  
Sbjct: 288 PLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTI 347

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K G++K+  +   +++ +G++ ++ +Y  L+   CKEG +  A+ L  +ME+ G
Sbjct: 348 LIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDG 407

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
              DK  + ++I G  +  +   AR  +E M   GF ++
Sbjct: 408 CTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSAD 446



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 93/188 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +++GLC+      A ++FR +  HG  P ++TY +L+ GLCK G L  A 
Sbjct: 268 LVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAF 327

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+  S   PN + YT ++    +  K K G E+ S +  +G   + + Y  ++ A 
Sbjct: 328 ALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGAL 387

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + EA     +M  DG   D  +YN +I  + +      A  L++EM  +GF  D 
Sbjct: 388 CKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADA 447

Query: 186 YTHTILID 193
            T  +L D
Sbjct: 448 ATRALLND 455



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 4/283 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+AL  FR +     +P +V ++ L   + + G   T  ++ KE+   G   +  + + +
Sbjct: 44  DDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSIL 103

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C     +   GL +LS + + G       + T++      G++ +     + M+  G+
Sbjct: 104 INCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGL 163

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q ++ +YN +IN   K GK   A   L +MEK G   +   ++ LIDG C  G +  AR 
Sbjct: 164 QPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARS 223

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLC 262
             + M   G   N+  Y  +++   K  +I+ A+ + +       V D  T+++++  LC
Sbjct: 224 VFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLC 283

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           +A R  +A +L       G          ++DGL   G   EA
Sbjct: 284 RAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEA 326


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 151/300 (50%), Gaps = 6/300 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   T+NI +NGLCK   T  A  M +   + GFVP  +TYN ++ G  K G 
Sbjct: 549 MVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGS 608

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A    +E+ +SG +PN ITYTT++    +N    L L++ + M+ KG   D   Y  
Sbjct: 609 VSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGA 668

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K   ++ A+    +++  G+  + V YN+LI+ Y     +EAA  L   M  +G
Sbjct: 669 LIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEG 728

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             CD  T+T LIDGL K G +  A      M+  G   ++  Y  +++ L   G++++A 
Sbjct: 729 ISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQ 788

Query: 241 NVFESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +   ME +DS T     Y++++    KA  L  A +L    L  G+    +    +++G
Sbjct: 789 KILAEME-RDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILING 847



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 148/314 (47%), Gaps = 5/314 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   T++I+++G  KN  T+ A  +F  +     VP   TYNI I GLCK GR  
Sbjct: 517 CG-LKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTS 575

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A+ +LK+  + G  P  +TY +IM    +       L     M   G + +   Y T+I
Sbjct: 576 EAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLI 635

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             F K      A     +M   G++LDI +Y  LI+ +CK+  +E A  L  E+   G  
Sbjct: 636 NGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLS 695

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +   +  LI G     N++ A    + M   G   +L+ Y  ++D L K+G++  A+++
Sbjct: 696 PNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDL 755

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           +  M  K    D   Y+ +++ LC   +L +A K+L    +  +        A++ G   
Sbjct: 756 YSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFK 815

Query: 299 SGCRREAKKIQSKI 312
           +G  +EA ++ +++
Sbjct: 816 AGNLQEAFRLHNEM 829



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 131/293 (44%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +L+ LCK      A  +++ +   G  P  V+YN +I G C+ G L  A  +  ++
Sbjct: 455 TYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDM 514

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  PN ITY+ +M   F+N   +    +   M  +      F Y   I    K+GR 
Sbjct: 515 LDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRT 574

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA D +++ V  G     ++YN++++ + KEG + +A     EM + G   +  T+T L
Sbjct: 575 SEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTL 634

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           I+G CK  N   A      M   G + ++ AY  ++D   K   I+ A  +F  +     
Sbjct: 635 INGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGL 694

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             +S  Y+S++        + +A  L    L  G+         ++DGL   G
Sbjct: 695 SPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEG 747



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 35/230 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+  ++NG CKN  TD AL+M   ++  G   ++  Y  LI G CK   + TA 
Sbjct: 624 VSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETAS 683

Query: 66  WILKELGDSGHAPNAI-----------------------------------TYTTIMKCC 90
           W+  EL D G +PN++                                   TYTT++   
Sbjct: 684 WLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGL 743

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +  +  L L++ S M  KG   D   Y  +I      G+L+ A   + +M  D +  ++
Sbjct: 744 LKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNV 803

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
             YN LI  + K G L+ A+ L +EM  +G   +  T+ ILI+G  K GN
Sbjct: 804 PIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGGN 853



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 141/299 (47%), Gaps = 5/299 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++  D+ P     N +L  L KN     A  ++  +   G   +  T +I+++   K   
Sbjct: 200 LVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNN 259

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+    E    G   +A  Y+ +++   +N   +L   +L  M+ KG+      + +
Sbjct: 260 EEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTS 319

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI A VK G + EA    ++MV+ GVQ+++V   TL+  YCK+ KL +A    D+M + G
Sbjct: 320 VIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENG 379

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              ++ T+ +LI+  CK GN+ K   L+ +  NK      +   N ++    K    + A
Sbjct: 380 PSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNK-NICPTVFIVNSLIRGFLKVESREEA 438

Query: 240 INVFESM---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F+     ++ + FTY+S++  LCK  ++  A+ L    L  G+   K +  +++ G
Sbjct: 439 SKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILG 497



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 136/318 (42%), Gaps = 5/318 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P     N ++ G  K    + A ++F        +  + TYN L+  LCK G++  A
Sbjct: 414 NICPTVFIVNSLIRGFLKVESREEASKLFDEAVACD-IANIFTYNSLLSWLCKEGKMSEA 472

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + +++ D G AP  ++Y +++    R     +   + S M   G   +   Y  ++  
Sbjct: 473 TTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDG 532

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K G  + A    ++MV + +     +YN  IN  CK G+   A  +L +  ++GF   
Sbjct: 533 YFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPV 592

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  ++DG  K G++  A      M + G   N+  Y  +++   K+   D A+ +  
Sbjct: 593 CLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRN 652

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M  K    D   Y +++   CK + + +AS L    L  G+        +++ G R+  
Sbjct: 653 EMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLN 712

Query: 301 CRREAKKIQSKIRMAKIS 318
               A  +Q ++    IS
Sbjct: 713 NMEAALNLQKRMLGEGIS 730



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 113/266 (42%), Gaps = 4/266 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N +LN   K    ++A+  F  L +   VP +   N L+  L K   +  AR + +++ 
Sbjct: 177 YNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMV 236

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G   +  T   +M+   ++   +   +     K +G   D   Y  VI AF K   ++
Sbjct: 237 LKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVE 296

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A   ++ M   G      ++ ++I    K+G +  A  L DEM   G + +    T L+
Sbjct: 297 LACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLV 356

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-- 250
            G CK   +  A    + MN+ G   N   Y  +++   K+G +  A +++  M+ K+  
Sbjct: 357 KGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNIC 416

Query: 251 --SFTYSSMVHNLCKAKRLPSASKLL 274
              F  +S++    K +    ASKL 
Sbjct: 417 PTVFIVNSLIRGFLKVESREEASKLF 442



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++ G L+P +  +N +++G       + AL + + +   G   +L TY  LI GL K GR
Sbjct: 689 LLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGR 748

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  E+   G  P+ I YT ++       + +   +IL+ M+R   T +   Y  
Sbjct: 749 LVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNA 808

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           +IA   K G L+EA     +M+  G+  +  +Y+ LIN   K G
Sbjct: 809 LIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGG 852


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 151/301 (50%), Gaps = 5/301 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T TFNI++ GLC     + A+ +  G+   G +P++VTYN LIKG CK+  L+ A  +  
Sbjct: 206 TKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFD 265

Query: 70  EL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           ++   SG +P+ +TYT+++    +  K +    +L  M R G       +  ++  + K 
Sbjct: 266 DVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKA 325

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G +  A +   +M++ G   D+V++ +LI+ YC+ G++   + L +EM  +G   + +T+
Sbjct: 326 GEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTY 385

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           +ILI+ LCK   +  AR  L  +           YN ++D   K GK++ AI + E ME 
Sbjct: 386 SILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEK 445

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           K    D  T++ ++   C   R+  A  +    +  G    K    +++  L  +G  +E
Sbjct: 446 KKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKE 505

Query: 305 A 305
           A
Sbjct: 506 A 506



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 136/268 (50%), Gaps = 7/268 (2%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           C    N +LN L K    ++A+++F    +     +  T+NILI+GLC  G+   A  +L
Sbjct: 170 CCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELL 229

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-RKGYTFDGFGYCTVIAAFVK 127
             +   G  P+ +TY T++K   ++ + K   E+   +K   G + D   Y ++I+ + K
Sbjct: 230 GGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCK 289

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+++EA+  ++ M+  G+    V++N L++ Y K G++  A  +  +M   G   D  T
Sbjct: 290 AGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVT 349

Query: 188 HTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            T LIDG C+ G + +G RL  E MN  G   N   Y+ +++ L K+ ++  A  +   +
Sbjct: 350 FTSLIDGYCRVGQVNQGFRL-WEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQL 408

Query: 247 EVKD----SFTYSSMVHNLCKAKRLPSA 270
             KD     F Y+ ++   CKA ++  A
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEA 436



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 104/209 (49%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+  M++G CK      A  +   + + G  P  VT+N+L+ G  KAG + TA  
Sbjct: 274 SPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEE 333

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           I  ++   G  P+ +T+T+++    R  +   G  +   M  +G   + F Y  +I A  
Sbjct: 334 IRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALC 393

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  RL +A + + Q+ +  +      YN +I+ +CK GK+  A ++++EMEK+  + DK 
Sbjct: 394 KENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKI 453

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIG 215
           T TILI G C  G +  A      M  IG
Sbjct: 454 TFTILIIGHCMKGRMFEAVSIFHKMVAIG 482



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 145/343 (42%), Gaps = 38/343 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL--- 68
           T+N++   LCK    D A +MF  ++  G  P       L+    + G+L  A  +L   
Sbjct: 105 TYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQS 164

Query: 69  KELGDSGHAPNAITYTTI-----------------MKCCFRNRKYKL------------- 98
            E+       N++  T +                  + C   + + +             
Sbjct: 165 YEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEK 224

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM-VTDGVQLDIVSYNTLI 157
            +E+L  M   G   D   Y T+I  F K   LK+A +  + +  + G   D+V+Y ++I
Sbjct: 225 AVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMI 284

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           + YCK GK++ A +LLD+M + G      T  +L+DG  KAG +  A      M   G  
Sbjct: 285 SGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCF 344

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
            ++  +  ++D   + G+++    ++E M  +    ++FTYS +++ LCK  RL  A +L
Sbjct: 345 PDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKAREL 404

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
           L       +         V+DG   +G   EA  I  ++   K
Sbjct: 405 LGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKK 447



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 75/172 (43%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TF  +++G C+    +   R++  +   G  P   TY+ILI  LCK  R
Sbjct: 338 MISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENR 397

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +L +L      P    Y  ++    +  K    + I+  M++K    D   +  
Sbjct: 398 LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTI 457

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
           +I      GR+ EA     +MV  G   D ++ ++L++   K G  + AY L
Sbjct: 458 LIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 140/279 (50%), Gaps = 2/279 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NGLC+ R  D A +M R + KHG  P  V+Y  L+ GLCK G    AR +
Sbjct: 378 PDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREM 437

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +    +    PNAITY+ +M    R  K     +++  M +KG+         +I +  +
Sbjct: 438 MNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQ 497

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ EA  +MEQ + +G  +++V++ T+I+ +C++  LEAA  LLD+M       D  T
Sbjct: 498 EEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVT 557

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +ID L K G I+ A      M ++G       Y  ++ +  + G+++  + + E M 
Sbjct: 558 YTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKML 617

Query: 248 VKDS--FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +      Y+ ++  LC    L  A KLL   L++  +I
Sbjct: 618 SRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKI 656



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 143/282 (50%), Gaps = 5/282 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+N ++ G C     ++A+ +   +   G  P+ ++Y  ++  LCK  R++  
Sbjct: 234 EIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEV 293

Query: 65  RWIL-KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           R ++ K L DS   P+ +TY T +    ++      LE L   + + +  D  GY  ++ 
Sbjct: 294 RLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVH 353

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +F + GR+ +A + + +M + G   D+V+Y ++IN  C+E K++ A  +L +M K G + 
Sbjct: 354 SFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKP 413

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  ++T L++GLCK GN   AR  +    +  +  N   Y+ ++    ++GK   A ++ 
Sbjct: 414 NTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLV 473

Query: 244 ESMEVKDSFTYSS----MVHNLCKAKRLPSASKLLLSCLKSG 281
             M  K  F        ++ +LC+ +++  A + +  CL +G
Sbjct: 474 REMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNG 515



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 142/304 (46%), Gaps = 6/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +++  C+    D A  +   +   G +P++VTY  +I GLC+  ++  A+ +L+++ 
Sbjct: 348 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMY 407

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN ++YT ++    +N       E+++  +   +  +   Y  ++  F + G+  
Sbjct: 408 KHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSS 467

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D + +M+  G     V  N LI   C+E K++ A   +++    G   +    T +I
Sbjct: 468 EACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVI 527

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EV 248
            G C+  +++ A   L+ M       ++  Y  I+D LGK G+I+ A  +   M     +
Sbjct: 528 HGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLI 587

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               TY +++H  C+  R+    KLL   L    +  ++A   V++ L   G   +A K+
Sbjct: 588 PTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKL 645

Query: 309 QSKI 312
             K+
Sbjct: 646 LGKV 649



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 141/303 (46%), Gaps = 8/303 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            +L P   T+N  ++ L K+ + D AL   R  ++  F  + V Y+ ++   C+ GR+  
Sbjct: 304 SNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDK 363

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A+ I+ E+   G  P+ +TYT+++    + RK     ++L  M + G   +   Y  ++ 
Sbjct: 364 AKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLN 423

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G   EA + M     D    + ++Y+ L++ + +EGK   A  L+ EM K+GF  
Sbjct: 424 GLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFP 483

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
                 +LI  LC+   +  A+  +E     G   N+  +  ++    +   ++ A+++ 
Sbjct: 484 TPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLL 543

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M +     D  TY++++  L K  R+  A+KL +  L+ G+       + V+    H 
Sbjct: 544 DDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVI----HQ 599

Query: 300 GCR 302
            CR
Sbjct: 600 YCR 602



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 5/241 (2%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           NA+R+   +QK G  P+L   N  I  L    RL  A   L+ +      PN ITY  ++
Sbjct: 187 NAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLI 246

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K      + +  +E+++ M  KG + D   Y TV+    K  R+KE    ME+M+ D   
Sbjct: 247 KGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNL 306

Query: 148 L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           L D V+YNT +++  K G  + A   L E E++ F  DK  ++ ++   C+ G +  A+ 
Sbjct: 307 LPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKE 366

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
            +  M   G   ++  Y  +++ L ++ K+D A  +   M       ++ +Y+++++ LC
Sbjct: 367 IVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLC 426

Query: 263 K 263
           K
Sbjct: 427 K 427



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 132/291 (45%), Gaps = 16/291 (5%)

Query: 29  ALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTT 85
           ALR F    +   +  + + Y  +++ L K    + A+ +L+ +        P A  Y  
Sbjct: 117 ALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGY-- 174

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +M    R  K +  + +L+ M++ G   D     T I   V   RL +A  ++E+M    
Sbjct: 175 VMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVE 234

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++ ++++YN LI  YC   +LE A  L+ EM  +G   DK ++  ++  LCK   IK  R
Sbjct: 235 IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVR 294

Query: 206 LHLEYMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSM 257
           L +E M K   DSNL      YN  V  L K G  D A+      E +    D   YS++
Sbjct: 295 LLMEKMLK---DSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAI 351

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           VH+ C+  R+  A +++      G         +V++GL       +AKK+
Sbjct: 352 VHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKM 402



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 2/199 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P     N+++  LC+    D A R       +G    +V +  +I G C+   
Sbjct: 476 MIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDD 535

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L ++  S   P+ +TYTTI+    +  + +   ++   M R G       Y T
Sbjct: 536 LEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRT 595

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  + ++GR+++    +E+M++   Q    +YN +I   C  G LE AY LL ++ +  
Sbjct: 596 VIHQYCRMGRVEDLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTA 653

Query: 181 FECDKYTHTILIDGLCKAG 199
            + D  T  +LI+     G
Sbjct: 654 SKIDANTCHMLIESYLSKG 672



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 13/272 (4%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           ++LN           +R F G +     P       L++ +C+   LR+A W  K  G+ 
Sbjct: 41  MVLNSFTGGYRQTEGIRRFEGGEDESRHP-------LVREICRLIELRSA-WNPKLEGEL 92

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKIGRLKE 133
            H   ++    +          ++ L       R+  Y  D   Y  ++    K    + 
Sbjct: 93  RHLLRSLKPRQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQG 152

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +  M    ++    ++  ++  Y + GKL  A  +L  M+K G E D       I 
Sbjct: 153 AKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIH 212

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
            L     +  A   LE M  +  + N+  YNC++       +++ A+ +   M  K    
Sbjct: 213 VLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSP 272

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           D  +Y +++  LCK KR+     L+   LK  
Sbjct: 273 DKISYYTVMGFLCKEKRIKEVRLLMEKMLKDS 304


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 146/298 (48%), Gaps = 4/298 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ IM++G C     + A+++   +   G     V Y  +I  LC  G++  A  
Sbjct: 282 PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVR 341

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++++   G   +A  +TT+M    R             M+++G   DG  Y  +I    
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G LKEA   +++M   G+ +D V+Y  LI+ YCK GK+  A+L+ ++M ++    +  
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVV 461

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L DGLCK G++  A   L  M   G + N+  YN +++ L K G ++ A+     M
Sbjct: 462 TYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM 521

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +      D +TY++++  LC++K L  A  LL   L  G++        +++G   SG
Sbjct: 522 DEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 579



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 140/278 (50%), Gaps = 7/278 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T ++NI+L  LC      +A ++F  +      P++VTY I++ G C    L TA  +L 
Sbjct: 253 TCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLS 309

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G   N + YT+++       +    + ++  M   G   D   + TV++ F + G
Sbjct: 310 EMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKG 369

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L  A ++ ++M   G+  D V+Y  LIN  C+ G+L+ A  +L EME +G + D  T+T
Sbjct: 370 DLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYT 429

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           +LIDG CK G +  A L    M +     N+  Y  + D L K G +  A  +   M  K
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK 489

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
               + FTY+S+++ LCKA  L  A + ++   ++G++
Sbjct: 490 GLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK 527



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 147/285 (51%), Gaps = 11/285 (3%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D A+++F+ L +        +YNIL+K LC AGR++ A  +  E+      P+ +TY  +
Sbjct: 239 DEAVQLFQELPEKN----TCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIM 291

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +       + +  +++LS M  +G   +   Y +VIA     G++ +A   +E MV  GV
Sbjct: 292 VHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGV 351

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
            LD   + T+++ +C++G L AA    DEM+K+G   D  T+T LI+GLC+AG +K A  
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L+ M   G D +   Y  ++D   K GK+  A  V   M  K    +  TY+++   LC
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           K   + +A++LL      G+ +      ++++GL  +G   +A +
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 151/311 (48%), Gaps = 4/311 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++NGLC+      A R+ + ++  G   + VTY +LI G CK G++  A  +  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PN +TYT +     +        E+L  M  KG   + F Y ++I    K G L
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A   M  M   G++ D+ +Y T+I   C+  +L+ A+ LL EM  +G +    T+ +L
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           ++G C +G ++G +  LE+M +     N   YN ++ +   +  +     +++ M     
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V +  TY+ ++   CKA+ +  A       ++ G R+  S+  A++  L       EA++
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARR 691

Query: 308 IQSKIRMAKIS 318
           +  K+R  +++
Sbjct: 692 LFEKMRKERLT 702



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 4/267 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           A F  +++G C+      A   F  +QK G   + VTY  LI GLC+AG L+ A  +L+E
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D G   +A+TYT ++    +  K      + + M +K  T +   Y  +     K G 
Sbjct: 416 MEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +  A + + +M + G++L+I +YN+LIN  CK G LE A   + +M++ G + D YT+T 
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           +I  LC++  +  A   L+ M   G    +  YN +++     G+++    + E M  K 
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKL 273
              ++ TY+S++   C  K + S +++
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEI 622



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 1/261 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+  + +GLCK      A  +   +   G    + TYN LI GLCKAG 
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGN 510

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A   + ++ ++G  P+  TYTTI+    ++++      +L  M  KG       Y  
Sbjct: 511 LEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNV 570

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   GR++     +E M+   +  +  +YN+L+  YC E  +++   +   M  Q 
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++ T+ ILI G CKA N+K A      M + GF     +YN ++  L K  K   A 
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEAR 690

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
            +FE M  K+  T    V+N 
Sbjct: 691 RLFEKMR-KERLTAEPDVYNF 710



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  ++ A    GR+K+A    ++M +     D+V+Y  +++ YC   +LE A  LL EM
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPP---DVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G E +   +T +I  LC  G +  A   +E M   G   +   +  ++    + G +
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A N F+ M+ +    D  TY+++++ LC+A  L  A ++L      G+ +       +
Sbjct: 372 AAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVL 431

Query: 293 VDGLRHSGCRREAKKIQSKIRMAKIS 318
           +DG    G   EA  + +K+   +++
Sbjct: 432 IDGYCKVGKMTEAFLVHNKMVQKRVT 457



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 75/176 (42%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N+++NG C +   +   R+   + +    P   TYN L+K  C    
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKN 615

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +++   I K +      PN  TY  ++K   + R  K  L   S M  KG+      Y  
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +I    K  +  EA    E+M  + +  +   YN  I+L   E  LE+   L DE+
Sbjct: 676 LIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 141/286 (49%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T+N++++G  K+     A  +   ++     P   TY++LI GLC +  
Sbjct: 407 MLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSD 466

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +L ++  +G  PN   Y T++K   +  +Y++ +E+L  M   G   D F Y  
Sbjct: 467 LQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNC 526

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    +  +++EA   +  M   G++ +  +Y   INLY K G+++ A     +M   G
Sbjct: 527 LIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG 586

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +   +TILI G C  GN   A    + M + G   ++ AY+ I+  L K+GK   A+
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAM 646

Query: 241 NVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            VF    ++  V D F Y+S++   CK   +  AS+L    L +G+
Sbjct: 647 GVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGI 692



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 147/304 (48%), Gaps = 4/304 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N  + GLC+    D AL + + + + G  P+  TY +L+ G CK  R + A+ I
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +  SG  PN  TYT ++    +    +  L I   M  +G   +   Y  +I    K
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + +A     +M+  G++ D  +YN LI+ Y K   +  A  LL EM+ +      +T
Sbjct: 394 AGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +++LI GLC + +++ A   L+ M + G   N+  Y  ++    ++ + + AI + + M 
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D F Y+ ++  LC+AK++  A  LL+   + G++       A ++    SG  +
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 304 EAKK 307
            A++
Sbjct: 574 VAER 577



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 4/309 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P   T+  +++G  K    + ALR+   +   G    +VTYN +I G+ KAG 
Sbjct: 337 MPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGE 396

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+  +G  P+  TY  ++    ++       E+L+ MK +  T   F Y  
Sbjct: 397 MAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSV 456

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+       L++A + ++QM+ +GV+ ++  Y TLI  Y +E + E A  LL  M   G
Sbjct: 457 LISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANG 516

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + +  LI GLC+A  ++ A++ L  M + G   N   Y   ++   K G+I  A 
Sbjct: 517 VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAE 576

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             F+ M     V ++  Y+ ++   C       A       L+ G+     A  A++  L
Sbjct: 577 RYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSL 636

Query: 297 RHSGCRREA 305
             +G  +EA
Sbjct: 637 SKNGKTKEA 645



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 33/321 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    ++ +++ L KN  T  A+ +F    K G VP++  YN LI G CK G 
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM------KCCFRNRKYKLGLEILSAMKRKGYTFD 114
           +  A  +  E+  +G  PN + Y T++      K       +KL  E++S    KG + D
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS----KGISPD 732

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           G+ YC +I    K G L++A     +     V   + ++N+LI+ +CK GK+  A  L D
Sbjct: 733 GYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFD 791

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGAR---LHLEYMNKIG----FDSNLEAYNCIV 227
           +M  +    +  T+TILID   KA  ++ A    L +E  N I     + S L +YN I 
Sbjct: 792 DMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIG 851

Query: 228 DRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +R          I++F+ ME +    D+  Y  M    CK  +   A KLL   L  G++
Sbjct: 852 NRF-------KMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIK 904

Query: 284 ILKSAQKAVVDGLRHSGCRRE 304
           +    +  V D L    C+ +
Sbjct: 905 L----EDDVFDALIFHLCKEK 921



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 142/314 (45%), Gaps = 40/314 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P    +  ++    +    + A+ + + +  +G +P+L  YN LI GLC+A +
Sbjct: 477 MIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKK 536

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--------------------- 99
           +  A+ +L ++G+ G  PNA TY   +    ++ + ++                      
Sbjct: 537 VEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTI 596

Query: 100 -----------LEILSAMK---RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                      +E LS  K    KG   D   Y  +I +  K G+ KEA     + +  G
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID--GLCKAGNIKG 203
           V  D+  YN+LI+ +CKEG +E A  L DEM   G   +   +  LI+  G CK+GN+  
Sbjct: 657 VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTE 716

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT---YSSMVHN 260
           A    + M   G   +   Y  ++D  GK+G ++ A+++F   + K   +   ++S++ +
Sbjct: 717 AFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDS 776

Query: 261 LCKAKRLPSASKLL 274
            CK  ++  A +L 
Sbjct: 777 FCKHGKVIEARELF 790



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 31  RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
           +++  + +   VP++ TY  +IK  CK G +   + +L E+ +    PN  TY   +   
Sbjct: 228 KVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGL 286

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +       LE+   M  KG   DG  Y  ++  F K  R KEA    E M + G+  + 
Sbjct: 287 CQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNR 346

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y  LI+ + KEG +E A  + DEM  +G + +  T+  +I G+ KAG +  A      
Sbjct: 347 FTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNE 406

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M   G + +   YN ++D   K   +  A  +   M+ +      FTYS ++  LC +  
Sbjct: 407 MLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSD 466

Query: 267 LPSASKLLLSCLKSGVR 283
           L  A+++L   +++GV+
Sbjct: 467 LQKANEVLDQMIRNGVK 483



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             F+I ++      + + A  +F      GF P L+  N L++ L KA  +     +   
Sbjct: 173 TVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGS 232

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + ++   P+  TYT ++K   +      G  +LS M+++    + F Y   I    + G 
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKP-NLFTYNAFIGGLCQTGA 291

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + EA +  + M+  G+  D  +Y  L++ +CK+ + + A L+ + M   G   +++T+T 
Sbjct: 292 VDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTA 351

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248
           LIDG  K GNI+ A    + M   G   N+  YN ++  + K G++  A+++F  M +  
Sbjct: 352 LIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG 411

Query: 249 --KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D++TY+ ++    K+  +  A +LL       +         ++ GL HS   ++A 
Sbjct: 412 IEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKAN 471

Query: 307 KI 308
           ++
Sbjct: 472 EV 473



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 2/207 (0%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           + FN +++  CK+     A  +F  +      P +VTY ILI    KA  +  A  +  +
Sbjct: 768 SAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLD 827

Query: 71  LGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +      PN +TYT+++    +   ++K+ + +   M+ +G   D   Y  + +A+ K G
Sbjct: 828 METRNIIPNTLTYTSLLLSYNQIGNRFKM-ISLFKDMEARGIACDAIAYGVMASAYCKEG 886

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +  EA   + + + +G++L+   ++ LI   CKE ++     LL EM K+       T  
Sbjct: 887 KSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCN 946

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGF 216
            L+ G  K+GN   A   L  M ++G+
Sbjct: 947 TLLLGFYKSGNEDEASKVLGVMQRLGW 973



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 7/250 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P    + I+++G  K    + AL +F   Q+   V  L  +N LI   CK G+
Sbjct: 724 MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS-VGSLSAFNSLIDSFCKHGK 782

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +  ++ D    PN +TYT ++    +    +   ++   M+ +    +   Y +
Sbjct: 783 VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTS 842

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ ++ +IG   +     + M   G+  D ++Y  + + YCKEGK   A  LL++   +G
Sbjct: 843 LLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 902

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRLG--KDGKID 237
            + +      LI  LCK   I      LE ++++G +  +L +  C    LG  K G  D
Sbjct: 903 IKLEDDVFDALIFHLCKEKQISTV---LELLSEMGKEELSLSSKTCNTLLLGFYKSGNED 959

Query: 238 HAINVFESME 247
            A  V   M+
Sbjct: 960 EASKVLGVMQ 969



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 29/275 (10%)

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           L +Y+IL   LC +G +  A  +L++L  +   P                     LEIL 
Sbjct: 120 LHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPP---------------------LEILD 158

Query: 105 AMKRKGYTFDGFG---YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           ++ R    F G     +   I  F  +G L EA+      +++G    ++  N L+    
Sbjct: 159 SLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLL 218

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K   +   + +   M +     D YT+T +I   CK G++   ++ L  M K     NL 
Sbjct: 219 KANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK-ECKPNLF 277

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            YN  +  L + G +D A+ V + M  K    D  TY+ +V   CK KR   A  +  S 
Sbjct: 278 TYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM 337

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             SG+   +    A++DG    G   EA +I+ ++
Sbjct: 338 PSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEM 372


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 148/314 (47%), Gaps = 40/314 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK------- 53
           M+   + P   T+ I+LNGLC++  T  A  +F+ ++++G  P  +TY  LI+       
Sbjct: 114 MVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGE 173

Query: 54  ----------------------------GLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                                       GLCKA RL  A   ++E+   G  PN +TY+ 
Sbjct: 174 IDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSN 233

Query: 86  IMKCCFRNRKYKLGLEILSAMK-RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           ++    ++ +    +      K RKG + +   Y   + A  K G L  A   +E++   
Sbjct: 234 LVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQS 293

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           GV  D+V+Y+ LIN + + G+ +A+  LL++M + G + D  T++ LI+ LCK    + A
Sbjct: 294 GVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDA 353

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
              LE M   G   N+  YN ++D L K GK+D    V+E M       D  TYS +++ 
Sbjct: 354 FRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNG 413

Query: 261 LCKAKRLPSASKLL 274
           L KA  L SA KL 
Sbjct: 414 LSKAGMLDSAVKLF 427



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 158/312 (50%), Gaps = 5/312 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           + G  TP    +N ++ GLC+     +A ++   + +   VP + TY IL+ GLC++ + 
Sbjct: 80  LSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKT 139

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
           + AR + +E+  +G  PN ITY T+++   R  +    L ++   +      D     T+
Sbjct: 140 KLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTI 199

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-KQG 180
           +    K  RL +A  +ME+M   GV+ + V+Y+ L++ + + G+L+      +E + ++G
Sbjct: 200 VGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKG 259

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +   +   +D LCKAG +  AR  +E + + G   ++  Y+ +++   + G+ D ++
Sbjct: 260 GSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASL 319

Query: 241 NVFESME---VK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + E M    VK D  TYS++++ LCK ++   A +LL     +G         +V+DGL
Sbjct: 320 ELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGL 379

Query: 297 RHSGCRREAKKI 308
             SG   E  ++
Sbjct: 380 CKSGKMDEVHRV 391



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 151/324 (46%), Gaps = 45/324 (13%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG---------- 54
           D+  CT     ++ GLCK    D+AL+    +++ G  P  VTY+ L+ G          
Sbjct: 192 DVITCTT----IVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRV 247

Query: 55  --------------------------LCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
                                     LCKAG L  AR  ++EL  SG  P+ +TY+ ++ 
Sbjct: 248 IRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLIN 307

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R  ++   LE+L  M+R G   D   Y T+I    K  + ++A   +E M   G   
Sbjct: 308 TFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPP 367

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++V+YN++++  CK GK++  + + + M K     D  T++I+++GL KAG +  A    
Sbjct: 368 NVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLF 427

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSF--TYSSMVHNLCK 263
           E +       +  AY+ ++  L + GK++ A  ++  MEV    D+     + +V  LC 
Sbjct: 428 ELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNICRALAGLVAALCD 487

Query: 264 AKRLPSASKLLLSCLKSGVRILKS 287
           AKR  SA +++    + G R+ KS
Sbjct: 488 AKRTDSARRIVEVARERGHRVTKS 511



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
            +V  G ++D  ++  L     +  K      L   +  +G    + T+ +++DGLC AG
Sbjct: 9   SVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAG 68

Query: 200 NIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
               A   LE + ++   +   +  YN I+  L +  ++  A  V E M     V + FT
Sbjct: 69  MANQA---LELVRELSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFT 125

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           Y+ +++ LC++ +   A ++     ++G +        ++  L  +G   EA ++  + R
Sbjct: 126 YTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQR 185


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 146/298 (48%), Gaps = 4/298 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ IM++G C     + A+++   +   G     V Y  +I  LC  G++  A  
Sbjct: 282 PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVR 341

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++++   G   +A  +TT+M    R             M+++G   DG  Y  +I    
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G LKEA   +++M   G+ +D V+Y  LI+ YCK GK+  A+L+ ++M ++    +  
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVV 461

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L DGLCK G++  A   L  M   G + N+  YN +++ L K G ++ A+     M
Sbjct: 462 TYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM 521

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +      D +TY++++  LC++K L  A  LL   L  G++        +++G   SG
Sbjct: 522 DEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 579



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 140/278 (50%), Gaps = 7/278 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T ++NI+L  LC      +A ++F  +      P++VTY I++ G C    L TA  +L 
Sbjct: 253 TCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLS 309

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G   N + YT+++       +    + ++  M   G   D   + TV++ F + G
Sbjct: 310 EMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKG 369

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L  A ++ ++M   G+  D V+Y  LIN  C+ G+L+ A  +L EME +G + D  T+T
Sbjct: 370 DLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYT 429

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           +LIDG CK G +  A L    M +     N+  Y  + D L K G +  A  +   M  K
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK 489

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
               + FTY+S+++ LCKA  L  A + ++   ++G++
Sbjct: 490 GLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK 527



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 147/285 (51%), Gaps = 11/285 (3%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D A+++F+ L +        +YNIL+K LC AGR++ A  +  E+      P+ +TY  +
Sbjct: 239 DEAVQLFQELPEKN----TCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIM 291

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +       + +  +++LS M  +G   +   Y +VIA     G++ +A   +E MV  GV
Sbjct: 292 VHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGV 351

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
            LD   + T+++ +C++G L AA    DEM+K+G   D  T+T LI+GLC+AG +K A  
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L+ M   G D +   Y  ++D   K GK+  A  V   M  K    +  TY+++   LC
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           K   + +A++LL      G+ +      ++++GL  +G   +A +
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 151/311 (48%), Gaps = 4/311 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++NGLC+      A R+ + ++  G   + VTY +LI G CK G++  A  +  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PN +TYT +     +        E+L  M  KG   + F Y ++I    K G L
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A   M  M   G++ D+ +Y T+I   C+  +L+ A+ LL EM  +G +    T+ +L
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           ++G C +G ++G +  LE+M +     N   YN ++ +   +  +     +++ M     
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V +  TY+ ++   CKA+ +  A       ++ G R+  S+  A++  L       EA++
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARR 691

Query: 308 IQSKIRMAKIS 318
           +  K+R  +++
Sbjct: 692 LFEKMRKDRLT 702



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 4/267 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           A F  +++G C+      A   F  +QK G   + VTY  LI GLC+AG L+ A  +L+E
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D G   +A+TYT ++    +  K      + + M +K  T +   Y  +     K G 
Sbjct: 416 MEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +  A + + +M + G++L+I +YN+LIN  CK G LE A   + +M++ G + D YT+T 
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           +I  LC++  +  A   L+ M   G    +  YN +++     G+++    + E M  K 
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKL 273
              ++ TY+S++   C  K + S +++
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEI 622



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 121/261 (46%), Gaps = 1/261 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+  + +GLCK      A  +   +   G    + TYN LI GLCKAG 
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGN 510

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A   + ++ ++G  P+  TYTTI+    ++++      +L  M  KG       Y  
Sbjct: 511 LEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNV 570

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   GR++     +E M+   +  +  +YN+L+  YC E  +++   +   M  Q 
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++ T+ ILI G CKA N+K A      M + GF     +YN ++  L K  K   A 
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEAR 690

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
            +FE M  KD  T    V+N 
Sbjct: 691 RLFEKMR-KDRLTAEPDVYNF 710



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  ++ A    GR+K+A    ++M +     D+V+Y  +++ YC   +LE A  LL EM
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPP---DVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G E +   +T +I  LC  G +  A   +E M   G   +   +  ++    + G +
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A N F+ M+ +    D  TY+++++ LC+A  L  A ++L      G+ +       +
Sbjct: 372 AAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVL 431

Query: 293 VDGLRHSGCRREAKKIQSKIRMAKIS 318
           +DG    G   EA  + +K+   +++
Sbjct: 432 IDGYCKVGKMTEAFLVHNKMVQKRVT 457



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N+++NG C +   +   R+   + +    P   TYN L+K  C    
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKN 615

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +++   I K +      PN  TY  ++K   + R  K  L   S M  KG+      Y  
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +I    K  +  EA    E+M  D +  +   YN  I+L   E  LE+   L DE+
Sbjct: 676 LIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 159/345 (46%), Gaps = 45/345 (13%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           CT TFNIML  LC       AL + R + +    P  VTYN +I G C  GR++ A  I+
Sbjct: 153 CTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIM 208

Query: 69  KELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFV 126
           +E+ + G  APN  TY T++    +  +    +++   M  KG    +   Y  +I  + 
Sbjct: 209 REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC 268

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G+L  A  Y ++MV  GV + + +YN L++    +G+   AY L++EM  +G   D +
Sbjct: 269 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVF 328

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIG---------------------------FD-- 217
           T+ ILI+G CK GN+K A    E M++ G                           FD  
Sbjct: 329 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 388

Query: 218 ------SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
                  +L  YN +++     G ID A  +   ME K    D  TY++++  LC   R+
Sbjct: 389 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 448

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             A KL+    K G++        ++ G    G  ++A +I++++
Sbjct: 449 DEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM 493



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 4/297 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P    +N ++ G C     D AL     + + G    + TYN+L+  L   GR   
Sbjct: 251 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 310

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +++E+G  G A +  TY  ++    +    K  LEI   M R+G       Y ++I 
Sbjct: 311 AYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIY 370

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  K G+++E     ++ V  G++ D+V YN LIN +   G ++ A+ ++ EMEK+    
Sbjct: 371 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 430

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  L+ GLC  G +  AR  ++ M K G   +L  YN ++      G +  A+ + 
Sbjct: 431 DDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIR 490

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             M  K       TY++++  LCK  +   A  ++   +++G+    S   ++++GL
Sbjct: 491 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 547



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 145/280 (51%), Gaps = 12/280 (4%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILS 104
            T+NI+++ LC AG+   A  +L+++      PNA+TY T++   C R R  +  L+I+ 
Sbjct: 155 TTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGR-VQAALDIMR 209

Query: 105 AMK-RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCK 162
            M+ R G   + + Y TVI+ + K+GR+ EA    ++M+T G V+ + V YN LI  YC 
Sbjct: 210 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           +GKL+ A L  D M ++G      T+ +L+  L   G    A   +E M   G   ++  
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFT 329

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN +++   K+G +  A+ +FE+M  +       TY+S+++ L K  ++    KL    +
Sbjct: 330 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAV 389

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           + G+R       A+++    SG    A +I  ++   +I+
Sbjct: 390 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 429


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 158/323 (48%), Gaps = 4/323 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P T T+N M+ G  K + T     +   ++K   VP   T  ++I GLC+ G 
Sbjct: 402 MIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGS 461

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + + +   G  PNA+ YTT++K   +  +++  + IL  M +KG   D   Y +
Sbjct: 462 IEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNS 521

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    K  +++EA DY+ +M+  G++ ++ +Y  LI+ YCK G+++ A     EM   G
Sbjct: 522 VIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCG 581

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +    T LIDG CK G+   A      M       ++  Y+ ++  L ++GK+  A+
Sbjct: 582 IAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAM 641

Query: 241 NVF-ESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +  E +E   V D FTY+S++   CK   +  A +L     + G+        A+++GL
Sbjct: 642 ELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGL 701

Query: 297 RHSGCRREAKKIQSKIRMAKISH 319
             +G    A+++   I    ++H
Sbjct: 702 CKAGEIERARELFDGIPGKGLAH 724



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N+++ GLC+    D A  + + + K G V ++ TY+ILI G  K  R   A+ 
Sbjct: 268 SPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKL 327

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+   G  P  + YT ++    R         +   M  +G   + F Y  ++    
Sbjct: 328 MLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVC 387

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G +++A   + +M+  G++ D  +YN +I  Y KE        LL EM+K       Y
Sbjct: 388 KFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAY 447

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  ++I+GLC+ G+I+ A    E M  +G   N   Y  ++    ++G+   A+ + + M
Sbjct: 448 TCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVM 507

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           + K    D   Y+S++  LCK++++  A   L+  ++ G++       A++ G   SG
Sbjct: 508 DKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSG 565



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 155/312 (49%), Gaps = 5/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+  +++G CK+     A R F+ +   G  P  V    LI G CK G 
Sbjct: 542 MIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGS 601

Query: 61  LRTARWILK-ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
              A  I +  LG S H P+  TY+ ++    RN K +  +E+LS    KG   D F Y 
Sbjct: 602 TTEATSIFRCMLGRSVH-PDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYN 660

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++I+ F K G + +A    E M   G+  +I++YN LIN  CK G++E A  L D +  +
Sbjct: 661 SIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGK 720

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   +  T+  +IDG CK+GN+  A    + M   G   +   Y+ ++D   K+G  + A
Sbjct: 721 GLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKA 780

Query: 240 INVF-ESME--VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +++F ES++     + + ++++   CK+ ++  A++LL   +   V+        ++D  
Sbjct: 781 LSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYH 840

Query: 297 RHSGCRREAKKI 308
             +G  +EA++ 
Sbjct: 841 CKTGFLKEAEQF 852



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 135/303 (44%), Gaps = 9/303 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G CK      A ++   + + G  P ++TYN LI GLCKAG +  AR
Sbjct: 652 LVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAR 711

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G A NA+TY TI+    ++        +   M  KG   D F Y  +I   
Sbjct: 712 ELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGC 771

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  ++A     + V  G      S N L++ +CK GK+  A  LL++M  +  + D 
Sbjct: 772 RKEGNTEKALSLFLESVQKGFA-STSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDH 830

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+TILID  CK G +K A      M K     N   Y  ++      G+      +F+ 
Sbjct: 831 VTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDE 890

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  KD      T+S M+    K        KL+   LK G  + K+    ++D L    C
Sbjct: 891 MIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPL----C 946

Query: 302 RRE 304
           R+E
Sbjct: 947 RKE 949



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 39/321 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P    +  +++G  +   +  A R+   +   G    L TYN L+KG+CK G 
Sbjct: 332 MFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGD 391

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK----------- 109
           +  A  +L E+   G  P+  TY  +++   + +      ++LS MK+            
Sbjct: 392 MEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGM 451

Query: 110 ------------------------GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                                   G   +   Y T+I   V+ GR +EA   ++ M   G
Sbjct: 452 IINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKG 511

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           VQ D++ YN++I   CK  K+E A   L EM ++G + + YT+  LI G CK+G ++ A 
Sbjct: 512 VQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVAD 571

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
            + + M   G   N      ++D   K+G    A ++F  M  +    D  TYS+++H L
Sbjct: 572 RYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGL 631

Query: 262 CKAKRLPSASKLLLSCLKSGV 282
            +  +L  A +LL   L+ G+
Sbjct: 632 LRNGKLQGAMELLSEFLEKGL 652



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 143/299 (47%), Gaps = 4/299 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L+ L K    +   R + G+ +   + ++ TY  LI    +AG  +  + +L E+ +
Sbjct: 205 NGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEE 264

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G +P+ +TY  ++    R  +     E+   M +KG   D F Y  +I  F K  R  E
Sbjct: 265 KGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTE 324

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +E+M + G++   V+Y  LI+ + ++G    A+ + +EM  +G + + +T+  L+ 
Sbjct: 325 AKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVK 384

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           G+CK G+++ A   L  M  +G   + + YN +++   K+       ++   M+    V 
Sbjct: 385 GVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVP 444

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            ++T   +++ LC+   +  AS++    +  GV+        ++ G    G  +EA +I
Sbjct: 445 TAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRI 503



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 135/313 (43%), Gaps = 40/313 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++NGLCK    + A  +F G+   G     VTY  +I G CK+G L  A 
Sbjct: 687 ISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAF 746

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT--------FDGF- 116
            +  E+   G  P++  Y+ ++  C +    +  L +     +KG+          DGF 
Sbjct: 747 RLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFC 806

Query: 117 -------------------------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
                                     Y  +I    K G LKEA  +   M    +  + +
Sbjct: 807 KSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNAL 866

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN-IKGARLHLEY 210
           +Y  L++ Y   G+    + L DEM  +  E D  T +++ID   K G+ +K  +L ++ 
Sbjct: 867 TYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKL-VDD 925

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M K G + +    + ++D L +   +   + V E +E +       T S++V    KA +
Sbjct: 926 MLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGK 985

Query: 267 LPSASKLLLSCLK 279
           +  A+++L S ++
Sbjct: 986 MDGAARVLKSMVR 998



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 128/311 (41%), Gaps = 39/311 (12%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             F ++++G  K    D A+  F G +++GFV  L+  N L+  L KA +L         
Sbjct: 167 VVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKL--------- 217

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
                                     +L     + M       D + Y  +I A  + G 
Sbjct: 218 --------------------------ELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGN 251

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            KE    + +M   G    +V+YN +I   C+ G+++ A+ L   M+K+G   D +T++I
Sbjct: 252 AKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSI 311

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LIDG  K      A+L LE M   G      AY  ++D   + G    A  V E M  + 
Sbjct: 312 LIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARG 371

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              + FTY+++V  +CK   +  A  LL   +  G++        +++G          K
Sbjct: 372 VKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVK 431

Query: 307 KIQSKIRMAKI 317
            + S+++ + +
Sbjct: 432 DLLSEMKKSNL 442



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 12/289 (4%)

Query: 30  LRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           L  F  +Q + GF  +L +++IL   LC +     A  ++ ++        +    +++K
Sbjct: 85  LDFFNWVQFQMGFSQKLQSFSILALILCNSRLFSRADSVVNQMIMMSSGGYSEILDSLIK 144

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
            C       +     S    +G  F+      +I  + K G   EA  +      +G  +
Sbjct: 145 SCKEFDLNNVNGNENSNNNDRGVVFE-----LLIDGYKKKGLFDEAVSFFLGAKRNGFVV 199

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLH 207
            ++  N L++   K  KLE  +   + M +     D YT+T LI+   +AGN K G RL 
Sbjct: 200 GLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLL 259

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
            E M + G   +L  YN ++  L + G++D A  + + M+    V D FTYS ++    K
Sbjct: 260 FE-MEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGK 318

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            KR   A  +L      G++    A  A++DG    G   EA +++ ++
Sbjct: 319 QKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEM 367



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 79/176 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+ I+++  CK  +   A + F  +QK   +P  +TY  L+ G   AGR
Sbjct: 821 MVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGR 880

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 +  E+      P+ +T++ ++    +   +   L+++  M +KG          
Sbjct: 881 RSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHV 940

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +I    +   + E    +E++   G+ L + + +TL+  + K GK++ A  +L  M
Sbjct: 941 LIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSM 996


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 150/306 (49%), Gaps = 39/306 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI----------------- 50
           P   T++I+++GLCK     +A+R+ R ++K GF P +VTY I                 
Sbjct: 344 PDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 403

Query: 51  ------------------LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                             +I  LCK GR+  A  +++E+   G  P+  +Y TI+     
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           N + +    +   +  +G   +G  Y T+I A ++ GR ++A    ++M+  G  LD+VS
Sbjct: 464 NEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVS 523

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN LI   CK+G ++ + +LL+EM ++G + +  ++ ILI  LCK   ++ A    + M 
Sbjct: 524 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML 583

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
             G   ++  YN +++ L K G +  A+N+ E +  +    D  TY+ ++   CK + L 
Sbjct: 584 NQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLD 643

Query: 269 SASKLL 274
            A+ LL
Sbjct: 644 DAAMLL 649



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 41/346 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T TF +    LC+    + AL + RG+ +HG VP+ V Y  +I  LC  G +  A 
Sbjct: 171 VPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAA 230

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-------YTFDGFGY 118
            +L E+   G A +  T+  +++      + +    ++  M  KG       Y F   G 
Sbjct: 231 TLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGL 290

Query: 119 C------------------------TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
           C                        TVI   +  G+L EAT+  E M   G Q D  +Y+
Sbjct: 291 CRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYS 350

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
            L++  CK G++ +A  LL EMEK+GF  +  T+TI++   CK G     R  LE M+  
Sbjct: 351 ILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 410

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           G   N + YN ++  L KDG++D A+ + + M  +    D  +Y++++++LC  +++  A
Sbjct: 411 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEA 470

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
             +  + L+ GV         ++  L   G      + Q  +R+AK
Sbjct: 471 EHMFENLLEEGVVANGITYNTIIHALLRDG------RWQDAVRLAK 510



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 4/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN ++ G         A  ++  +   G  P+  TY+IL+ GLCK GR+ +A  +L+E+ 
Sbjct: 314 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREME 373

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G APN +TYT ++    +N  +     +L  M  KG T +  GY  +I A  K GR+ 
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +++M + G   DI SYNT+I   C   ++E A  + + + ++G   +  T+  +I
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
             L + G  + A    + M   G   ++ +YN ++  + KDG +D ++ + E M  K   
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            ++ +Y+ ++  LCK +R+  A +L    L  G+         +++GL   G    A  +
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 613

Query: 309 QSKI 312
             K+
Sbjct: 614 LEKL 617



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 12/282 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL--VTYNILIKGLCKAGRLRTAR 65
           P   T+  +L GLC+ R  D A  M       G VPEL  V +N +I G    G+L  A 
Sbjct: 278 PGVMTYGFLLQGLCRVRQADEARAML------GRVPELNVVLFNTVIGGCLAEGKLAEAT 331

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +G  G  P+A TY+ +M    +  +    + +L  M++KG+  +   Y  V+ +F
Sbjct: 332 ELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSF 391

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G   +    +E+M   G+ L+   YN +I   CK+G+++ A  L+ EM  QG   D 
Sbjct: 392 CKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDI 451

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  +I  LC    ++ A    E + + G  +N   YN I+  L +DG+   A+ + + 
Sbjct: 452 CSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKE 511

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M +     D  +Y+ ++  +CK   +  +  LL    + G++
Sbjct: 512 MILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 112/222 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT  +  +N M+  LCK+   D A+ + + ++  G  P++ +YN +I  LC   ++  A 
Sbjct: 412 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAE 471

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + L + G   N ITY TI+    R+ +++  + +   M   G + D   Y  +I A 
Sbjct: 472 HMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAM 531

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +  +   +E+M   G++ + VSYN LI+  CKE ++  A  L  +M  QG   D 
Sbjct: 532 CKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDI 591

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            T+  LI+GLCK G +  A   LE ++      ++  YN ++
Sbjct: 592 VTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 128/254 (50%), Gaps = 2/254 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++ L ++    +A+R+ + +  HG   ++V+YN LIK +CK G +  +  +L+E+
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 547

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PN ++Y  ++    + R+ +  LE+   M  +G   D   Y T+I    K+G +
Sbjct: 548 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 607

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE-MEKQGFECDKYTHTI 190
             A + +E++  + V  DI++YN LI+ +CK   L+ A +LL+  M       D+    I
Sbjct: 608 HAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQI 667

Query: 191 LIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           L D   K   + K + L+    N+   +  LE     +D   K G +  +I+   ++   
Sbjct: 668 LPDKNFKLYLHTKDSYLYCSRANECKANILLEQSTSFIDSAPKVGGVSLSIDPGPAVGST 727

Query: 250 DSFTYSSMVHNLCK 263
               +SS + +LC+
Sbjct: 728 SILCFSSGISDLCR 741



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++NGLCK  +   AL +   L      P+++TYNILI   CK   
Sbjct: 582 MLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRL 641

Query: 61  LRTARWILK 69
           L  A  +L 
Sbjct: 642 LDDAAMLLN 650


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 145/279 (51%), Gaps = 6/279 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   ++ P   TFNI+++GLCK      A  +   + K G  P +VTY  L+ G      
Sbjct: 255 MSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKE 314

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +   +   G  PN  +Y+ ++    +N+     +++   M  K  T +   Y +
Sbjct: 315 VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+ +  D ++++   G   +I++YN+L+N  CK  +++ A  LL +M+ +G
Sbjct: 375 LIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG 434

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            + D  T+T L+DGLCK G +K A R++ + + K G+  N+  Y  +++ L K+G  D A
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCK-GYPLNIRMYTVMINGLCKEGFFDEA 493

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           +++   ME    + D+ TY +++  L K  +   A KLL
Sbjct: 494 LSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLL 532



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 148/310 (47%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +  +++  CK++   +A  ++  +      P +VT+N LI G C  G+L+ A  +
Sbjct: 192 PDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGL 251

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+  +   PN  T+  ++    +  + K    +LS M ++G   +   Y +++  +  
Sbjct: 252 LNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFL 311

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +  + +A      +   GV  ++ SY+ +IN  CK   ++ A  L  EM  +    +  T
Sbjct: 312 VKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVT 371

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLCK+G I      ++ +N  G  +N+  YN +++ L K+ ++D AI +   M+
Sbjct: 372 YSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMK 431

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY+++V  LCK  RL  A ++    L  G  +       +++GL   G   
Sbjct: 432 DEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFD 491

Query: 304 EAKKIQSKIR 313
           EA  + S++ 
Sbjct: 492 EALSLLSQME 501



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 147/334 (44%), Gaps = 40/334 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    FN +L+ L K  +   A+   + ++  G  PE+ T+NILI       +L  A  
Sbjct: 50  TPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFS 109

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ ++   G+ P+ +T  T+++    N K K  L     + RK +  D   Y T+I    
Sbjct: 110 MVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLC 169

Query: 127 KIGRLK------------------------------------EATDYMEQMVTDGVQLDI 150
           K G  +                                    +A D   +M+   +  ++
Sbjct: 170 KSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNV 229

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V++N+LI  +C  G+L+ A  LL+EM       + YT  ILIDGLCK G +K A   L  
Sbjct: 230 VTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSV 289

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M K G + N+  Y  ++D      +++ A +VF ++ ++    +  +YS M++ LCK K 
Sbjct: 290 MIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKM 349

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +  A KL        +        +++DGL  SG
Sbjct: 350 VDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSG 383



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 35/246 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   ++++M+NGLCKN+  D A+++F+ +      P  VTY+ LI GLCK+GR+    
Sbjct: 330 VTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVW 389

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ + G   N ITY +++    +N +    + +L+ MK                  
Sbjct: 390 DLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMK------------------ 431

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                             +G+Q D+ +Y TL++  CK G+L+ A  +  ++  +G+  + 
Sbjct: 432 -----------------DEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNI 474

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T++I+GLCK G    A   L  M   G   +   Y  ++  L K+ K   A+ +   
Sbjct: 475 RMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLRE 534

Query: 246 MEVKDS 251
           M  ++S
Sbjct: 535 MIARES 540



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP T T++ +++GLCK+    +   +   +   G    ++TYN L+ GLCK  ++  A
Sbjct: 364 NMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKA 423

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L ++ D G  P+  TYTT++    +N + K    I   +  KGY  +   Y  +I  
Sbjct: 424 IALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMING 483

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             K G   EA   + QM  +G   D V+Y TLI+   K  K   A  LL EM  +  +C
Sbjct: 484 LCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIARESDC 542



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 126/282 (44%), Gaps = 20/282 (7%)

Query: 27  DNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           D+A+  F   L  +   P +  +N ++  L K    + A    +++   G  P   T+  
Sbjct: 34  DDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNI 93

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++ C     +      +++ + + GY  D     T++      G++KEA ++ + ++   
Sbjct: 94  LINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKR 153

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTILIDGLCKAGNIKGA 204
             LD VSY TLIN  CK G+  AA  LL ++E       D   +T +ID  CK   +  A
Sbjct: 154 FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDA 213

Query: 205 -RLHLE------YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFT 253
             L+ E      Y N + F+S +  + CIV      G++  A+ +   M +     + +T
Sbjct: 214 YDLYSEMIVKKIYPNVVTFNSLIYGF-CIV------GQLKEAVGLLNEMSLNNVNPNVYT 266

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           ++ ++  LCK   +  A+ +L   +K GV        +++DG
Sbjct: 267 FNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDG 308



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 11/245 (4%)

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           + H P    +  I+    +   +K+ +     M+ KG   + F +  +I  F  + +L  
Sbjct: 47  NNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNF 106

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   + +++  G Q D V+ NTL+   C  GK++ A    D + ++ F  D+ ++  LI+
Sbjct: 107 AFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLIN 166

Query: 194 GLCKAGNIKGARLHLEYMNKIG----FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           GLCK+G  + A   L+ + KI        ++  Y  I+D   KD  +  A +++  M VK
Sbjct: 167 GLCKSGETRAA---LQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVK 223

Query: 250 DSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             +    T++S+++  C   +L  A  LL     + V         ++DGL   G  ++A
Sbjct: 224 KIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKA 283

Query: 306 KKIQS 310
             + S
Sbjct: 284 TSVLS 288


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 146/295 (49%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G C       A      + +   +P + TYN+LI  L   G++  A 
Sbjct: 337 LLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEAD 396

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++K++GDSG  P++ITY  ++    R    K    +   M  KG       Y ++I   
Sbjct: 397 GMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVL 456

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+K A D  E+++ +G   D++ +N LI+ +C  G L+ A+ LL EM+K+    D+
Sbjct: 457 SKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDE 516

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+ G C+ G ++ AR  L+ M + G   +  +YN ++    K G I+ A  + + 
Sbjct: 517 VTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDE 576

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M          TY++++  LCK ++   A +LL   +  G+    S   ++++G+
Sbjct: 577 MLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGI 631



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 135/275 (49%), Gaps = 4/275 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  +T+N++++ L      D A  M + +   G VP+ +TYNILI G C+ G 
Sbjct: 367 MVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGN 426

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +  E+   G  P  +TYT+++    +  + K   ++   + R+G + D   +  
Sbjct: 427 AKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNA 486

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G L  A   +++M    +  D V+YNTL+   C+EGK+E A  LL EM+++G
Sbjct: 487 LIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRG 546

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  ++  LI G  K G+I  A    + M  IGF+  L  YN ++  L K+ + D A 
Sbjct: 547 IRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAE 606

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
            + + M  K    D  TY S++  + K      AS
Sbjct: 607 ELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEAS 641



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 151/340 (44%), Gaps = 39/340 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNIM+N LCK      A      ++  G  P +VTYN +I G C  GR+  AR +L  +
Sbjct: 238 TFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIM 297

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P++ TY +++    +  K +    IL  MK  G       Y T+I  +   G L
Sbjct: 298 KNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDL 357

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A  Y ++MV   +   + +YN LI+    EGK++ A  ++ +M   G   D  T+ IL
Sbjct: 358 VKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNIL 417

Query: 192 IDGLCKAGNIKGA-RLHLEYMNK----------------------------------IGF 216
           I+G C+ GN K A  LH E ++K                                   G 
Sbjct: 418 INGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGA 477

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
             +L  +N ++D    +G +D A  + + M+    V D  TY++++   C+  ++  A +
Sbjct: 478 SPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARE 537

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           LL    + G+R    +   ++ G    G   +A  I+ ++
Sbjct: 538 LLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEM 577



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 6/295 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN ML+   K   T+    ++  + +      + T+NI+I  LCK G+L+ A+
Sbjct: 197 VVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAK 256

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  + + G  PN +TY T++   C R R     + +L  MK +G   D + Y ++I+ 
Sbjct: 257 DFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARM-VLDIMKNRGVEPDSYTYGSLISG 315

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+L+EA+  +E+M   G+    V+YNTLI+ YC +G L  A+   DEM ++     
Sbjct: 316 MCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPT 375

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ +LI  L   G +  A   ++ M   G   +   YN +++   + G    A N+ +
Sbjct: 376 VSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHD 435

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            M  K       TY+S+++ L K  R+ +A  L    ++ G         A++DG
Sbjct: 436 EMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDG 490



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 95/196 (48%), Gaps = 4/196 (2%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           ++I +  +++ C   ++     E    MK KG       +  +++ F+K+ + +      
Sbjct: 165 SSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLY 224

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
            +M    ++  + ++N +IN+ CKEGKL+ A   +  ME  G + +  T+  +I G C  
Sbjct: 225 AEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSR 284

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTY 254
           G ++GAR+ L+ M   G + +   Y  ++  + K GK++ A  + E M+    +  + TY
Sbjct: 285 GRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTY 344

Query: 255 SSMVHNLCKAKRLPSA 270
           ++++   C    L  A
Sbjct: 345 NTLIDGYCNKGDLVKA 360



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+N ++ G C+    + A  + + +++ G  P+ ++YN LI G  K G +  A
Sbjct: 511 NIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDA 570

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             I  E+   G  P  +TY  +++   +N++  L  E+L  M  KG T D   Y ++I  
Sbjct: 571 FTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEG 630

Query: 125 FVKIGRLKEATD 136
             K+    EA+D
Sbjct: 631 IGKVDDSSEASD 642


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 139/299 (46%), Gaps = 4/299 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+N ++N  C+    + A ++       G  P L+TYN ++ GLCK G+   A+ +L E
Sbjct: 293 VTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIE 352

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  PNA TY T++    R        EI   M R+G   D   + ++I    + G 
Sbjct: 353 MLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGH 412

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L +A  +  +M   G+  D V Y  LI+ +C+ G L  A  + DEM  +G   D  T+  
Sbjct: 413 LYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNT 472

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
            ++GLCK      A +    M + G   +   +  ++    KDG +D A+N+FE+M    
Sbjct: 473 FLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN 532

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              D  TY++++   CKA  +  A +L    ++  +     +   V++G   SG   EA
Sbjct: 533 LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEA 591



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +L GLCK    D A  +   + + G  P   TYN L+  +C+   +  A+
Sbjct: 323 MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQ 382

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+   G  P+ +++++++    RN      L     M+R G   D   Y  +I  F
Sbjct: 383 EIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L +A    ++M+  G  +D+V+YNT +N  CK+     A +L +EM ++G   D 
Sbjct: 443 CRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDF 502

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT T LI G CK GN+  A    E M +     +   YN ++D   K G++  A  +++ 
Sbjct: 503 YTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDD 562

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     + D  +Y ++++  C +  LP A  L    L+ G+R        ++ G   SG 
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 302 RREAKKIQSKI 312
             +A +  SK+
Sbjct: 623 MPKAYEYLSKM 633



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N LCK+R  +N +     ++  G   ++VTYN LI   C+ G +  A  +L   
Sbjct: 259 TLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSF 318

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P  +TY  I+    +  KY    ++L  M + G T +   Y T++    +   +
Sbjct: 319 SSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNI 378

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA +  ++M   GV  D+VS+++LI +  + G L  A +   EME+ G   D   +TIL
Sbjct: 379 LEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           IDG C+ G +  A    + M   G   ++  YN  ++ L K      A  +F  M     
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V D +T+++++   CK   +  A  L  + +++ ++  K     ++DG   +G    AK+
Sbjct: 499 VPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKE 558

Query: 308 I 308
           +
Sbjct: 559 L 559



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 123/228 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF  ++ G CK+   D AL +F  + +    P+ VTYN LI G CKAG 
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +  ++      P+ I+Y T++     +      L +   M  KG   +     T
Sbjct: 553 MGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + + G + +A +Y+ +M+++G+  D  SYNTLI+ Y KE  LE A++L++EMEK+G
Sbjct: 613 LIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG 672

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + +  T+ ++++G C  G ++ A   L  M +IG + +   Y+ +++
Sbjct: 673 LQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 148/311 (47%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    + I+++G C+N    +AL+M   +   G   ++VTYN  + GLCK      A 
Sbjct: 428 IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADAD 487

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  P+  T+TT+++   ++      L +  AM R     D   Y T+I  F
Sbjct: 488 MLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGF 547

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +  A +  + M+   +  D +SY T++N +C  G L  A  L D+M ++G   + 
Sbjct: 548 CKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNL 607

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   LI G C++G++  A  +L  M   G   +  +YN ++D   K+  ++ A  +   
Sbjct: 608 VTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINE 667

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME +    +  TY+ +++  C   ++  A ++L   ++ G+    +   ++++G      
Sbjct: 668 MEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDN 727

Query: 302 RREAKKIQSKI 312
            +EA +   ++
Sbjct: 728 MKEAFRFHDEM 738



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 112/214 (52%), Gaps = 1/214 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   T+N +++G CK      A  ++  + +   +P+ ++Y  ++ G C +G 
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++ + G  PN +T  T++K   R+       E LS M   G   D F Y T
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  ++K   L++A   + +M   G+Q +I++YN ++N +C EGK++ A  +L +M + G
Sbjct: 648 LIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIG 707

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNK 213
              D  T++ LI+G     N+K A R H E + +
Sbjct: 708 INPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 126/273 (46%), Gaps = 4/273 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L GL +  + D A  ++  + + G    + T NI++  LCK  +     + L ++  
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEG 285

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G   + +TY T++    R    +   ++L++   +G       Y  ++    KIG+   
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDR 345

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A D + +M+  G+  +  +YNTL+   C+   +  A  + DEM ++G   D  + + LI 
Sbjct: 346 AKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIG 405

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
            L + G++  A +H   M + G   +   Y  ++D   ++G +  A+ + + M  +    
Sbjct: 406 VLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           D  TY++ ++ LCK K    A  L    ++ G+
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 96/184 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D+ P   ++  +LNG C +     AL +   + + G  P LVT N LIKG C++G 
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L ++  +G  P++ +Y T++    +    +    +++ M+++G  F+   Y  
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNL 682

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   G+++EA   + +M+  G+  D  +Y++LIN +  +  ++ A+   DEM ++G
Sbjct: 683 ILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742

Query: 181 FECD 184
              D
Sbjct: 743 LVPD 746



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 123/253 (48%), Gaps = 4/253 (1%)

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
           F+ L++ G    +   N L+ GL + G +  A  I  E+   G   N  T   ++    +
Sbjct: 210 FQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCK 269

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           +RK++  +  LS M+ KG   D   Y T+I A+ + G ++EA   +    + G++  +++
Sbjct: 270 DRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLT 329

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN ++   CK GK + A  +L EM + G   +  T+  L+  +C+  NI  A+   + M+
Sbjct: 330 YNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMS 389

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
           + G   +L +++ ++  L ++G +  A+  F  ME    V D+  Y+ ++   C+   L 
Sbjct: 390 RRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALS 449

Query: 269 SASKLLLSCLKSG 281
            A K+    L  G
Sbjct: 450 DALKMRDEMLARG 462



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            + Y  +++   + +K + G E    ++RKG +        ++   V+ G +  A +   
Sbjct: 187 GLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYG 246

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           ++V  G++L++ + N ++N  CK+ K E     L +ME +G   D  T+  LI+  C+ G
Sbjct: 247 EVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG 306

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYS 255
            ++ A   L   +  G +  L  YN I+  L K GK D A +V   M       ++ TY+
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +++  +C+   +  A ++     + GV
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGV 393



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 97/202 (48%), Gaps = 12/202 (5%)

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           G  Y  ++  +V+  +L+E ++  + +   GV + I + N L+    + G ++ A+ +  
Sbjct: 187 GLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYG 246

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           E+ + G E + YT  I+++ LCK    +     L  M   G  +++  YN +++   ++G
Sbjct: 247 EVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG 306

Query: 235 KIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
            ++ A  +  S   +       TY+++++ LCK  +   A  +L+  L+ G+    +   
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGL----TPNA 362

Query: 291 AVVDGLRHSGCRR----EAKKI 308
           A  + L    CRR    EA++I
Sbjct: 363 ATYNTLLVEICRRDNILEAQEI 384


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 1/250 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    +   R+   +Q  G  P++ TY++LI GLCK  +L  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN++++TT++    ++ +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D + +M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKE 406

Query: 246 MEVKDSFTYS 255
           M+ +D +  S
Sbjct: 407 MQ-RDGYVPS 415



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 117/216 (54%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  V++  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +N   K   ++++ M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + +  T+T++I+  CK G++      ++ M + G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 412



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+   CK G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + +AM+  G   D + Y  +I    K  +L +A +  ++M+ +G+  + VS+ TLI+ 
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK+G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  +  M+  G   +
Sbjct: 251 HCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   ++KE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ P+ +T
Sbjct: 409 RDGYVPSVVT 418


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 145/315 (46%), Gaps = 20/315 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P T+T++ ++  LC+    + A  +F+ ++  G +P++ TY ILI   CK G +  AR
Sbjct: 451 FVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQAR 510

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+   G +P+ +TYT ++    + ++     +I   M   G   +   Y  ++   
Sbjct: 511 SWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGL 570

Query: 126 VKIGRLKEATDYMEQMV----------------TDGVQLDIVSYNTLINLYCKEGKLEAA 169
            K G  ++A +   +M+                TD +  ++V+Y  LI+  CK  K+  A
Sbjct: 571 CKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDA 630

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             LLD M   G E +   +  LIDG CK G +  A+     M+K G+   +  Y  ++D 
Sbjct: 631 QELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDA 690

Query: 230 LGKDGKIDHAINVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
           + KD ++D AI V     ES    +  TY++M+  LC+      A KLL    K G    
Sbjct: 691 MFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPN 750

Query: 286 KSAQKAVVDGLRHSG 300
                +++DGL  SG
Sbjct: 751 VVTYTSLIDGLGKSG 765



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 40/331 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++GLCK     +A  +   +  +G  P  + Y+ LI G CK G+L  A+
Sbjct: 607 IAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQ 666

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G+ P   TYT+++   F++R+  L +++LS M     T +   Y  +I   
Sbjct: 667 EVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGL 726

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +IG  ++A   +  M   G   ++V+Y +LI+   K GK++ +  L  +M  QG   + 
Sbjct: 727 CRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNY 786

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNK------------------------IGFDSNLE 221
            T+ +LI+  C AG +  A   L  M +                        +G    LE
Sbjct: 787 VTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELE 846

Query: 222 A---------YNCIVDRLGKDGKIDHAINVF-ESMEVKDSF------TYSSMVHNLCKAK 265
           +         Y  ++D   K G+++ A+ +  E MEV  S       TY+S++  LC A 
Sbjct: 847 SHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLAS 906

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +L  A +L     + GV    SA   ++ GL
Sbjct: 907 QLEKAFELYSEITRKGVVPELSAFICLIKGL 937



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 20/288 (6%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+  +L+   K +    A  +F  +   G  P  +TY+ L+ GLCKAG  + A  
Sbjct: 522 SPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACE 581

Query: 67  IL-KELGDSGH---------------APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           +  K +G S +               APN +TY  ++    +  K     E+L  M   G
Sbjct: 582 VYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNG 641

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              +   Y  +I  F K+G+L  A +   +M   G    + +Y +LI+   K+ +L+ A 
Sbjct: 642 CEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAI 701

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +L +M +     +  T+T +IDGLC+ G  + A   L  M K G + N+  Y  ++D L
Sbjct: 702 KVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGL 761

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           GK GK+D ++ +F  M  +    +  TY  ++++ C A  L  A  LL
Sbjct: 762 GKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLL 809



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 137/335 (40%), Gaps = 28/335 (8%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT---- 63
           P  + FN +++  C  R    A ++   +   G  P  V YNI I  +C    L +    
Sbjct: 342 PNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLL 401

Query: 64  --ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  + +E+  S    N +      +C     K+    +I+  M RKG+  D   Y  V
Sbjct: 402 ALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKV 461

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    +  ++++A    ++M + GV  D+ +Y  LI+ +CK G +E A    DEME  G 
Sbjct: 462 ITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGC 521

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
                T+T L+    K   +  A      M   G   N   Y+ +VD L K G+   A  
Sbjct: 522 SPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACE 581

Query: 242 VFESM---------------EVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           V+  M               E  DS      TY +++  LCKA ++  A +LL     +G
Sbjct: 582 VYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNG 641

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
                    A++DG    G    A+++    RM+K
Sbjct: 642 CEPNHIIYDALIDGFCKVGKLDNAQEV--FFRMSK 674



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 5/249 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   T+  M++GLC+      AL++   ++K G  P +VTY  LI GL K+G+
Sbjct: 707 MLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGK 766

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +  +  ++   G APN +TY  ++  C           +LS MK+  +     GYC+
Sbjct: 767 VDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCS 826

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+  F K  +   +   +E++ + G+      Y  LI+ + K G+LE A  L  EM +  
Sbjct: 827 VVQGFSK--KFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVS 884

Query: 181 FECD---KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
              +   K T+T LI  LC A  ++ A      + + G    L A+ C++  L K  K +
Sbjct: 885 SSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWN 944

Query: 238 HAINVFESM 246
            A+ +  SM
Sbjct: 945 EALQLCYSM 953



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 138/307 (44%), Gaps = 10/307 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           M++GL +    D A+     ++ +  +P +VTY  L+ G  K  +L   + I+  + + G
Sbjct: 280 MISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEG 339

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE-- 133
             PN   + +++      R Y    ++L+ M   G       Y   I +      L    
Sbjct: 340 CNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPD 399

Query: 134 ----ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
               A    E+M+     L+ V+        C  GK + A+ ++  M ++GF  D  T++
Sbjct: 400 LLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYS 459

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            +I  LC+A  ++ A L  + M  +G   ++  Y  ++D   K G I+ A + F+ ME  
Sbjct: 460 KVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESV 519

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                  TY++++H   K K++P AS +    + +G         A+VDGL  +G  ++A
Sbjct: 520 GCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKA 579

Query: 306 KKIQSKI 312
            ++ +K+
Sbjct: 580 CEVYAKM 586



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 19/288 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  AT+N ++  L      D   R+ + + + GF  +  T     + LCK GR   A  +
Sbjct: 205 PSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALVM 264

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++         + +  T ++        +   +  L  M+      +   Y T++A F+K
Sbjct: 265 IER---EDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLK 321

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +L      +  M+ +G   +   +N+L++ YC       AY LL+ M   G       
Sbjct: 322 KKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVV 381

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD---------GKIDH 238
           + I I  +C    +    L L    K+     + A +C+++++            GK D 
Sbjct: 382 YNIFIGSICSGEELPSPDL-LALAEKVY--EEMLASSCVLNKVNTANFARCLCGMGKFDK 438

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           A  + + M     V D+ TYS ++  LC+A ++  A  L       GV
Sbjct: 439 AFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 103/256 (40%), Gaps = 8/256 (3%)

Query: 24  RYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           R  +  +R F   ++  G+      YN L + L    R RT   +L+E+G+         
Sbjct: 115 RTPELCVRFFLWAERQVGYSHTGACYNALAEVLHFDDRARTTERLLREIGEDDREVLGRL 174

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
              I++ C R+  +   LE L  +K  GY   G  Y  ++      G++       ++M 
Sbjct: 175 LNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMS 234

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
             G   D  +        CKEG+   A +++   E++ F+ D    T +I GL +A    
Sbjct: 235 ELGFCTDKFTVGCFAQALCKEGRWSDALVMI---EREDFKLDTVLCTQMISGLMEASLFD 291

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMV 258
            A   L  M       N+  Y  ++    K  ++     +   M  +    +   ++S+V
Sbjct: 292 EAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLV 351

Query: 259 HNLCKAKRLPSASKLL 274
           H+ C A+  P A KLL
Sbjct: 352 HSYCNARDYPYAYKLL 367



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI---TYTT 85
           +L +   L+ HG V     Y +LI    KAGRL  A  + KE+ +   + N     TYT+
Sbjct: 838 SLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTS 897

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +++      + +   E+ S + RKG   +   +  +I   +K+ +  EA      M  +G
Sbjct: 898 LIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEG 957

Query: 146 V 146
           V
Sbjct: 958 V 958


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 146/298 (48%), Gaps = 4/298 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ IM++G C     + A+++   +   G     V Y  +I  LC  G++  A  
Sbjct: 282 PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVR 341

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++++   G   +A  +TT+M    R             M+++G   DG  Y  +I    
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G LKEA   +++M   G+ +D V+Y  LI+ YCK GK+  A+L+ ++M ++    +  
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVV 461

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T L DGLCK G++  A   L  M   G + N+  YN +++ L K G ++ A+     M
Sbjct: 462 TYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM 521

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +      D +TY++++  LC++K L  A  LL   L  G++        +++G   SG
Sbjct: 522 DEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 579



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 140/278 (50%), Gaps = 7/278 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T ++NI+L  LC      +A ++F  +      P++VTY I++ G C    L TA  +L 
Sbjct: 253 TCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLS 309

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G   N + YT+++       +    + ++  M   G   D   + TV++ F + G
Sbjct: 310 EMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKG 369

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L  A ++ ++M   G+  D V+Y  LIN  C+ G+L+ A  +L EME +G + D  T+T
Sbjct: 370 DLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYT 429

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           +LIDG CK G +  A L    M +     N+  Y  + D L K G +  A  +   M  K
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK 489

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
               + FTY+S+++ LCKA  L  A + ++   ++G++
Sbjct: 490 GLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK 527



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 147/285 (51%), Gaps = 11/285 (3%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D A+++F+ L +        +YNIL+K LC AGR++ A  +  E+      P+ +TY  +
Sbjct: 239 DEAVQLFQELPEKN----TCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIM 291

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +       + +  +++LS M  +G   +   Y +VIA     G++ +A   +E MV  GV
Sbjct: 292 VHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGV 351

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
            LD   + T+++ +C++G L AA    DEM+K+G   D  T+T LI+GLC+AG +K A  
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            L+ M   G D +   Y  ++D   K GK+  A  V   M  K    +  TY+++   LC
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           K   + +A++LL      G+ +      ++++GL  +G   +A +
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 151/311 (48%), Gaps = 4/311 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  ++NGLC+      A R+ + ++  G   + VTY +LI G CK G++  A  +  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PN +TYT +     +        E+L  M  KG   + F Y ++I    K G L
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A   M  M   G++ D+ +Y T+I   C+  +L+ A+ LL EM  +G +    T+ +L
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           ++G C +G ++G +  LE+M +     N   YN ++ +   +  +     +++ M     
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V +  TY+ ++   CKA+ +  A       ++ G R+  S+  A++  L       EA++
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARR 691

Query: 308 IQSKIRMAKIS 318
           +  K+R  +++
Sbjct: 692 LFEKMRKERLT 702



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 4/267 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           A F  +++G C+      A   F  +QK G   + VTY  LI GLC+AG L+ A  +L+E
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D G   +A+TYT ++    +  K      + + M +K  T +   Y  +     K G 
Sbjct: 416 MEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +  A + + +M + G++L+I +YN+LIN  CK G LE A   + +M++ G + D YT+T 
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           +I  LC++  +  A   L+ M   G    +  YN +++     G+++    + E M  K 
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKL 273
              ++ TY+S++   C  K + S +++
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEI 622



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 1/261 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+  + +GLCK      A  +   +   G    + TYN LI GLCKAG 
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGN 510

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A   + ++ ++G  P+  TYTTI+    ++++      +L  M  KG       Y  
Sbjct: 511 LEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNV 570

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   GR++     +E M+   +  +  +YN+L+  YC E  +++   +   M  Q 
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++ T+ ILI G CKA N+K A      M + GF     +YN ++  L K  K   A 
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEAR 690

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
            +FE M  K+  T    V+N 
Sbjct: 691 RLFEKMR-KERLTAEPDVYNF 710



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  ++ A    GR+K+A    ++M +     D+V+Y  +++ YC   +LE A  LL EM
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPP---DVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G E +   +T +I  LC  G +  A   +E M   G   +   +  ++    + G +
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A N F+ M+ +    D  TY+++++ LC+A  L  A ++L      G+ +       +
Sbjct: 372 AAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVL 431

Query: 293 VDGLRHSGCRREAKKIQSKIRMAKIS 318
           +DG    G   EA  + +K+   +++
Sbjct: 432 IDGYCKVGKMTEAFLVHNKMVQKRVT 457



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 75/176 (42%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N+++NG C +   +   R+   + +    P   TYN L+K  C    
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKN 615

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +++   I K +      PN  TY  ++K   + R  K  L   S M  KG+      Y  
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +I    K  +  EA    E+M  + +  +   YN  I+L   E  LE+   L DE+
Sbjct: 676 LIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 139/299 (46%), Gaps = 4/299 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+N ++N  C+    + A ++       G  P L+TYN ++ GLCK G+   A+ +L E
Sbjct: 293 VTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIE 352

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  PNA TY T++    R        EI   M R+G   D   + ++I    + G 
Sbjct: 353 MLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGH 412

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L +A  +  +M   G+  D V Y  LI+ +C+ G L  A  + DEM  +G   D  T+  
Sbjct: 413 LYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNT 472

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
            ++GLCK      A +    M + G   +   +  ++    KDG +D A+N+FE+M    
Sbjct: 473 FLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN 532

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              D  TY++++   CKA  +  A +L    ++  +     +   V++G   SG   EA
Sbjct: 533 LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEA 591



 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +L GLCK    D A  +   + + G  P   TYN L+  +C+   +  A+
Sbjct: 323 MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQ 382

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+   G  P+ +++++++    RN      L     M+R G   D   Y  +I  F
Sbjct: 383 EIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L +A    ++M+  G  +D+V+YNT +N  CK+     A +L +EM ++G   D 
Sbjct: 443 CRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDF 502

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT T LI G CK GN+  A    E M +     +   YN ++D   K G++  A  +++ 
Sbjct: 503 YTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDD 562

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     + D  +Y ++++  C +  LP A  L    L+ G+R        ++ G   SG 
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 302 RREAKKIQSKI 312
             +A +  SK+
Sbjct: 623 MPKAYEYLSKM 633



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N LCK+R  +N +     ++  G   ++VTYN LI   C+ G +  A  +L   
Sbjct: 259 TLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSF 318

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P  +TY  I+    +  KY    ++L  M + G T +   Y T++    +   +
Sbjct: 319 SSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNI 378

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA +  ++M   GV  D+VS+++LI +  + G L  A +   EME+ G   D   +TIL
Sbjct: 379 LEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           IDG C+ G +  A    + M   G   ++  YN  ++ L K      A  +F  M     
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V D +T+++++   CK   +  A  L  + +++ ++  K     ++DG   +G    AK+
Sbjct: 499 VPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKE 558

Query: 308 I 308
           +
Sbjct: 559 L 559



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 123/228 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF  ++ G CK+   D AL +F  + +    P+ VTYN LI G CKAG 
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +  ++      P+ I+Y T++     +      L +   M  KG   +     T
Sbjct: 553 MGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + + G + +A +Y+ +M+++G+  D  SYNTLI+ Y KE  LE A++L++EMEK+G
Sbjct: 613 LIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG 672

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + +  T+ ++++G C  G ++ A   L  M +IG + +   Y+ +++
Sbjct: 673 LQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 148/311 (47%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    + I+++G C+N    +AL+M   +   G   ++VTYN  + GLCK      A 
Sbjct: 428 IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADAD 487

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  P+  T+TT+++   ++      L +  AM R     D   Y T+I  F
Sbjct: 488 MLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGF 547

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +  A +  + M+   +  D +SY T++N +C  G L  A  L D+M ++G   + 
Sbjct: 548 CKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNL 607

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   LI G C++G++  A  +L  M   G   +  +YN ++D   K+  ++ A  +   
Sbjct: 608 VTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINE 667

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME +    +  TY+ +++  C   ++  A ++L   ++ G+    +   ++++G      
Sbjct: 668 MEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDN 727

Query: 302 RREAKKIQSKI 312
            +EA +   ++
Sbjct: 728 MKEAFRFHDEM 738



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 112/214 (52%), Gaps = 1/214 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   T+N +++G CK      A  ++  + +   +P+ ++Y  ++ G C +G 
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++ + G  PN +T  T++K   R+       E LS M   G   D F Y T
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  ++K   L++A   + +M   G+Q +I++YN ++N +C EGK++ A  +L +M + G
Sbjct: 648 LIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIG 707

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNK 213
              D  T++ LI+G     N+K A R H E + +
Sbjct: 708 INPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 126/273 (46%), Gaps = 4/273 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L GL +  + D A  ++  + + G    + T NI++  LCK  +     + L ++  
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEG 285

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G   + +TY T++    R    +   ++L++   +G       Y  ++    KIG+   
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDR 345

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A D + +M+  G+  +  +YNTL+   C+   +  A  + DEM ++G   D  + + LI 
Sbjct: 346 AKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIG 405

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
            L + G++  A +H   M + G   +   Y  ++D   ++G +  A+ + + M  +    
Sbjct: 406 VLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           D  TY++ ++ LCK K    A  L    ++ G+
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 96/184 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D+ P   ++  +LNG C +     AL +   + + G  P LVT N LIKG C++G 
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L ++  +G  P++ +Y T++    +    +    +++ M+++G  F+   Y  
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNL 682

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   G+++EA   + +M+  G+  D  +Y++LIN +  +  ++ A+   DEM ++G
Sbjct: 683 ILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742

Query: 181 FECD 184
              D
Sbjct: 743 LVPD 746



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 123/253 (48%), Gaps = 4/253 (1%)

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
           F+ L++ G    +   N L+ GL + G +  A  I  E+   G   N  T   ++    +
Sbjct: 210 FQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCK 269

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           +RK++  +  LS M+ KG   D   Y T+I A+ + G ++EA   +    + G++  +++
Sbjct: 270 DRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLT 329

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN ++   CK GK + A  +L EM + G   +  T+  L+  +C+  NI  A+   + M+
Sbjct: 330 YNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMS 389

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
           + G   +L +++ ++  L ++G +  A+  F  ME    V D+  Y+ ++   C+   L 
Sbjct: 390 RRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALS 449

Query: 269 SASKLLLSCLKSG 281
            A K+    L  G
Sbjct: 450 DALKMRDEMLARG 462



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            + Y  +++   + +K + G E    ++RKG +        ++   V+ G +  A +   
Sbjct: 187 GLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYG 246

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           ++V  G++L++ + N ++N  CK+ K E     L +ME +G   D  T+  LI+  C+ G
Sbjct: 247 EVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG 306

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYS 255
            ++ A   L   +  G +  L  YN I+  L K GK D A +V   M       ++ TY+
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +++  +C+   +  A ++     + GV
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGV 393



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 97/202 (48%), Gaps = 12/202 (5%)

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           G  Y  ++  +V+  +L+E ++  + +   GV + I + N L+    + G ++ A+ +  
Sbjct: 187 GLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYG 246

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           E+ + G E + YT  I+++ LCK    +     L  M   G  +++  YN +++   ++G
Sbjct: 247 EVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG 306

Query: 235 KIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
            ++ A  +  S   +       TY+++++ LCK  +   A  +L+  L+ G+    +   
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGL----TPNA 362

Query: 291 AVVDGLRHSGCRR----EAKKI 308
           A  + L    CRR    EA++I
Sbjct: 363 ATYNTLLVEICRRDNILEAQEI 384


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 144/276 (52%), Gaps = 9/276 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G CK    ++A+ +F  +++ G   + VTYN L+ GLC +GR   A  +
Sbjct: 113 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARL 172

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++++      PN IT+T ++    +  K+   +++   M R+    D F Y ++I     
Sbjct: 173 MRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM 232

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA   ++ MVT G   D+V+YNTLIN +CK  +++    L  EM ++G   D  T
Sbjct: 233 HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT 292

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I G  +AG    A+   E  +++    N+  Y+ ++  L  + +++ A+ +FE+M+
Sbjct: 293 YNTIIQGYFQAGRPDAAQ---EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQ 349

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL--LSC 277
                 D  TY+ ++H +CK   +  A  L   LSC
Sbjct: 350 KSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSC 385



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + ++NG C+     +A+ +   +++ GF P++V YN +I G CK G +  A  +
Sbjct: 78  PDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVEL 137

Query: 68  LKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +   G   +A+TY +++   CC  + ++     ++  M  +    +   +  VI  F
Sbjct: 138 FDRMERDGVRADAVTYNSLVAGLCC--SGRWSDAARLMRDMVMRDIVPNVITFTAVIDVF 195

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK G+  EA    E+M    V  D+ +YN+LIN  C  G+++ A  +LD M  +G   D 
Sbjct: 196 VKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDV 255

Query: 186 YTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            T+  LI+G CK+  + +G +L  E M + G   +   YN I+    + G+ D A  +F 
Sbjct: 256 VTYNTLINGFCKSKRVDEGTKLFRE-MAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFS 314

Query: 245 SMEVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            M+ + +  TYS +++ LC   R+  A  L  +  KS + +  +    V+ G+
Sbjct: 315 RMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGM 367



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 157/317 (49%), Gaps = 6/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    F+ +L+ + K++  D  + +F  ++  G   +L +YNI+I  LC+  R
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 60

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
              A  ++ ++   G+ P+ +T ++++   C  NR +   ++++S M+  G+  D   Y 
Sbjct: 61  FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFD-AIDLVSKMEEMGFRPDVVIYN 119

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I    KIG + +A +  ++M  DGV+ D V+YN+L+   C  G+   A  L+ +M  +
Sbjct: 120 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR 179

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               +  T T +ID   K G    A    E M +   D ++  YN +++ L   G++D A
Sbjct: 180 DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEA 239

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             + + M  K    D  TY+++++  CK+KR+   +KL     + G+         ++ G
Sbjct: 240 KQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 299

Query: 296 LRHSGCRREAKKIQSKI 312
              +G    A++I S++
Sbjct: 300 YFQAGRPDAAQEIFSRM 316



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 123/247 (49%), Gaps = 3/247 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P   TF  +++   K      A++++  + +    P++ TYN LI GLC  GR
Sbjct: 176 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR 235

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L  +   G  P+ +TY T++    ++++   G ++   M ++G   D   Y T
Sbjct: 236 VDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNT 295

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + + GR   A +   +M +   + +I +Y+ L+   C   ++E A +L + M+K  
Sbjct: 296 IIQGYFQAGRPDAAQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE 352

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D  T+ I+I G+CK GN++ A      ++  G   ++ +Y  ++    +  + D + 
Sbjct: 353 IELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSD 412

Query: 241 NVFESME 247
            ++  M+
Sbjct: 413 LLYRKMQ 419



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 3/174 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG CK++  D   ++FR + + G V + +TYN +I+G  +AGR   A+ I
Sbjct: 253 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 312

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + DS   PN  TY+ ++     N + +  L +   M++     D   Y  VI    K
Sbjct: 313 FSRM-DS--RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCK 369

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           IG +++A D    +   G++ D+VSY T+I+ +C++ + + + LL  +M++ G 
Sbjct: 370 IGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 423



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 39/68 (57%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+NI+++G+CK    ++A  +FR L   G  P++V+Y  +I G C+  +   +  + ++
Sbjct: 358 TTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRK 417

Query: 71  LGDSGHAP 78
           + + G  P
Sbjct: 418 MQEDGLLP 425



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 31/173 (17%)

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G+  D+ SYN +IN  C+  +   A  ++ +M K G+E D  T + LI+G C+   +  A
Sbjct: 40  GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 99

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA 264
              +  M ++GF  ++  YN I+                                  CK 
Sbjct: 100 IDLVSKMEEMGFRPDVVIYNTII-------------------------------DGSCKI 128

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
             +  A +L     + GVR       ++V GL  SG   +A ++   + M  I
Sbjct: 129 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 181


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 153/313 (48%), Gaps = 24/313 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T NI+ N LC        L    G+ + G++P++VTYN LIKGLC+  R+  A 
Sbjct: 6   LSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVAT 65

Query: 66  WILKE-LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            I+ + L   GH   A                    EI   MK +G   +   Y +++  
Sbjct: 66  CIIIDGLCKVGHEDEA-------------------KEIFEEMKAQGMIPNVISYSSLVHG 106

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   G+L+E+     +MV  GVQ ++V +N LI++ CKEGK+  A  LL+   ++G   D
Sbjct: 107 FCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILD 166

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  LIDG CK G++  AR     M   G + N  +Y  +++   K  K++ A+N++ 
Sbjct: 167 LVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYN 226

Query: 245 SMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       +  TYS+++  L +  ++  A+KL      SG+ +        +DGL  +G
Sbjct: 227 EMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNG 286

Query: 301 CRREAKKIQSKIR 313
              EA ++ ++++
Sbjct: 287 VLFEAMELFNELK 299



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 8/294 (2%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           I+++GLCK  + D A  +F  ++  G +P +++Y+ L+ G C AG+L  ++ +  E+ D 
Sbjct: 67  IIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQ 126

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  PN + +  ++    +  K     ++L    ++G   D   Y ++I  F KIG L  A
Sbjct: 127 GVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSA 186

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
                 M + G + + +SY  LIN YCK  K+E A  L +EM + G   +  T++ L+ G
Sbjct: 187 RKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTG 246

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
           L + G +  A      M   G   +   Y   +D L K+G +  A+ +F  ++      D
Sbjct: 247 LLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLD 306

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
             +YS ++  LCKA ++  A +      + G++          + + H  CR E
Sbjct: 307 FESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQ----PNVVTCNIMIHGFCRVE 356



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 7/281 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FN++++ LCK      A ++     + G + +LVTYN LI G CK G 
Sbjct: 123 MVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGD 182

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +AR +   +   G   N I+YT ++    +  K +  + + + M + G   +   Y T
Sbjct: 183 LSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYST 242

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++   ++ G++ +A      M   G+ +D   Y   ++  CK G L  A  L +E++   
Sbjct: 243 LLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYN 302

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F+ D  +++ LIDGLCKAG ++ A    + +++ G   N+   N ++    +  ++D A 
Sbjct: 303 FKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKAN 362

Query: 241 NVFESME-------VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +FE ME         D  TY++++   C++ +L     LL
Sbjct: 363 ILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLL 403



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 32/170 (18%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +  + I L+GLCKN     A+ +F  L+ + F  +  +Y+ LI GLCKAG++  A    K
Sbjct: 272 SCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFK 331

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +L   G  PN +T   ++                             G+C V     ++ 
Sbjct: 332 QLSQEGLQPNVVTCNIMIH----------------------------GFCRV----EQVD 359

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +     + ME+M  +G   DI++YNTL+  +C+  KLE    LL +M K+
Sbjct: 360 KANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 409



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 21/197 (10%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL--------- 156
           M   G + D F    +      + R+ E    M  ++  G   DIV+YNTL         
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHR 60

Query: 157 --------INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
                   I+  CK G  + A  + +EM+ QG   +  +++ L+ G C AG ++ ++   
Sbjct: 61  ISVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLF 120

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKA 264
             M   G   NL  +N ++D L K+GK+  A  + E       + D  TY+S++   CK 
Sbjct: 121 NEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKI 180

Query: 265 KRLPSASKLLLSCLKSG 281
             L SA KL LS    G
Sbjct: 181 GDLSSARKLFLSMPSKG 197


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 148/314 (47%), Gaps = 40/314 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK------- 53
           M+   + P   T+ I+LNGLC++  T  A  +F+ ++++G  P  +TY  LI+       
Sbjct: 114 MVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGE 173

Query: 54  ----------------------------GLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                                       GLCKA RL  A   ++E+   G  PN +TY+ 
Sbjct: 174 IDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSN 233

Query: 86  IMKCCFRNRKYKLGLEILSAMK-RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           ++    ++ +    +      K RKG + +   Y   + A  K G L  A   +E++   
Sbjct: 234 LVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQS 293

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           GV  D+V+Y+ LIN + + G+ +A+  LL++M + G + D  T++ LI+ LCK    + A
Sbjct: 294 GVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDA 353

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
              LE M   G   N+  YN ++D L K GK+D    V+E M       D  TYS +++ 
Sbjct: 354 FRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNG 413

Query: 261 LCKAKRLPSASKLL 274
           L KA  L SA KL 
Sbjct: 414 LSKAGMLDSAVKLF 427



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 158/312 (50%), Gaps = 5/312 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           + G  TP    +N ++ GLC+     +A ++   + +   VP + TY IL+ GLC++ + 
Sbjct: 80  LSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKT 139

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
           + AR + +E+  +G  PN ITY T+++   R  +    L ++   +      D     T+
Sbjct: 140 KLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTI 199

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-KQG 180
           +    K  RL +A  +ME+M   GV+ + V+Y+ L++ + + G+L+      +E + ++G
Sbjct: 200 VGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKG 259

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +   +   +D LCKAG +  AR  +E + + G   ++  Y+ +++   + G+ D ++
Sbjct: 260 GSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASL 319

Query: 241 NVFESME---VK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + E M    VK D  TYS++++ LCK ++   A +LL     +G         +V+DGL
Sbjct: 320 ELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGL 379

Query: 297 RHSGCRREAKKI 308
             SG   E  ++
Sbjct: 380 CKSGKMDEVHRV 391



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 153/330 (46%), Gaps = 45/330 (13%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG---------- 54
           D+  CT     ++ GLCK    D+AL+    +++ G  P  VTY+ L+ G          
Sbjct: 192 DVITCTT----IVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRV 247

Query: 55  --------------------------LCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
                                     LCKAG L  AR  ++EL  SG  P+ +TY+ ++ 
Sbjct: 248 IRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLIN 307

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R  ++   LE+L  M+R G   D   Y T+I    K  + ++A   +E M   G   
Sbjct: 308 TFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPP 367

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++V+YN++++  CK GK++  + + + M K     D  T++I+++GL KAG +  A    
Sbjct: 368 NVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLF 427

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSF--TYSSMVHNLCK 263
           E +       +  AY+ ++  L + GK++ A  ++  MEV    D+     + +V  LC 
Sbjct: 428 ELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNICRALAGLVAALCD 487

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
           A+R  SA +++    + G R+ KS    +V
Sbjct: 488 AERTDSARRIVEVASERGHRMTKSGDTDLV 517



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
            +V  GV++D  ++  L     +  K      L   +  +G    + T+ +++DGLC AG
Sbjct: 9   SVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAG 68

Query: 200 NIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
               A   LE + ++   +   L  YN I+  L +  ++  A  V E M     V + FT
Sbjct: 69  MANQA---LELVRELSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFT 125

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           Y+ +++ LC++ +   A ++     ++G +        ++  L  +G   EA ++  + R
Sbjct: 126 YTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQR 185


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 150/321 (46%), Gaps = 43/321 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   T+N+++NGLCK R T  A  + + ++      P+LVTY+ +I G CK G +  A
Sbjct: 37  VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 96

Query: 65  RWILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             IL+E+    G AP+ +TYT+++    R+ K     E++  MK KG   D F +  +I 
Sbjct: 97  CEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 156

Query: 124 AFVKIGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME----- 177
            +    ++ EA   Y E + +   + D+V+Y  LI+ +CK G LE A  +L  ME     
Sbjct: 157 GWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCV 216

Query: 178 ------------------------------KQGFECDKYTHTILIDGLCKAGNIKGARLH 207
                                          +G   +  T+T LI GLC A  +  ARL 
Sbjct: 217 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 276

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
           ++ M       +  +YN ++D   + G+I+ A  +F+ M  K    D  TY+ +V   C 
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCN 336

Query: 264 AKRLPSASKLLLSCLKSGVRI 284
           A RL  A + LL  +K+   I
Sbjct: 337 ASRLEEA-RFLLENMKTAAGI 356



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 146/309 (47%), Gaps = 6/309 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   TF+ ++ G C  R  D AL++++  L    + P++VTY  LI G CK+G L  A
Sbjct: 144 VEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKA 203

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L  +      PN +TY++++    +       L++   M  KG   +   Y T+I  
Sbjct: 204 MKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHG 263

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
                ++  A   M++M       D VSYN L++ YC+ G++E A  L  EM  +    D
Sbjct: 264 LCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPD 323

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + T+T L+ G C A  ++ AR  LE M    G D ++  Y+ +V    +  +   A    
Sbjct: 324 RITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFI 383

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M  +    ++ TYSS++  LCKA R+  A ++L + +   V        +V+  L   
Sbjct: 384 QEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRL 443

Query: 300 GCRREAKKI 308
           G   EA K+
Sbjct: 444 GDMDEAWKL 452



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 147/298 (49%), Gaps = 5/298 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++G CK+   + A++M   ++    VP +VTY+ L+ GLCKAG L  A  +
Sbjct: 182 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 241

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +   G  PN +TYTT++       K      ++  M       D   Y  ++  + +
Sbjct: 242 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCR 301

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKY 186
           +GR++EA    ++M T     D ++Y  L+  +C   +LE A  LL+ M+   G + D  
Sbjct: 302 LGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVV 361

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++I++ G  +A     A   ++ M       N   Y+ ++D L K G++DHA+ V ++M
Sbjct: 362 TYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNM 421

Query: 247 ---EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               V+ S  T++S++  LC+   +  A KLL++    G+         +++G   +G
Sbjct: 422 VNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTG 479



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 8/239 (3%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P +VT+ I+I G CKA +L+ A    +++ +   APN  TY  ++    + R      E+
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 103 LSAMKR-KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLY 160
           L  M+  K    D   Y TVI  F K G +  A + + +MVT DG+  D+V+Y ++++  
Sbjct: 64  LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGL 123

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSN 219
           C++GK++ A  ++ EM+ +G E DK+T + LI G C A  +  A +L+ E +    +  +
Sbjct: 124 CRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPD 183

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           +  Y  ++D   K G ++ A+ +   ME    V +  TYSS++H LCKA  L  A  L 
Sbjct: 184 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 242



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 145/301 (48%), Gaps = 6/301 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++GLC++   D A  M R ++  G  P+  T++ LI G C A ++  A 
Sbjct: 109 IAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEAL 168

Query: 66  WILKE-LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            + KE L  S   P+ +TYT ++    ++   +  +++L  M+ +    +   Y +++  
Sbjct: 169 KLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHG 228

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G L +A D   +M + G   ++V+Y TLI+  C   K++AA LL+DEM       D
Sbjct: 229 LCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPD 288

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++  L+DG C+ G I+ A+   + M       +   Y C+V       +++ A  + E
Sbjct: 289 TVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLE 348

Query: 245 SMEV-----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           +M+       D  TYS +V    +AKR   A++ +   +   V        +++DGL  +
Sbjct: 349 NMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKA 408

Query: 300 G 300
           G
Sbjct: 409 G 409



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 161/355 (45%), Gaps = 53/355 (14%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA--------- 58
           P   T++ +L+GLCK    D AL +FR +   G VP +VTY  LI GLC A         
Sbjct: 217 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 276

Query: 59  --------------------------GRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                                     GR+  A+ + KE+      P+ ITYT +++    
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCN 336

Query: 93  NRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
             + +    +L  MK   G   D   Y  V+A + +  R  EA +++++M+   V  + V
Sbjct: 337 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAV 396

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y++LI+  CK G+++ A  +L  M  +  E    T   +I  LC+ G++  A   L  M
Sbjct: 397 TYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 456

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-----------VKDSFTYSSMVHN 260
              G +  +  Y  +++   + G+++ A  +FE M            +     +S+++  
Sbjct: 457 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRG 516

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQK---AVVDGLRHSGCRREAKKIQSKI 312
           LCKA+ +  A  ++   L+S  R  + A++   A+VDGL  +G   EA K+ + I
Sbjct: 517 LCKAREIDKAMAVVEE-LRS--RECEPAEEDCLAIVDGLLRAGRTEEAGKLINSI 568



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 144/287 (50%), Gaps = 12/287 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T ++N +L+G C+    + A ++F+ +     +P+ +TY  L++G C A RL  AR++
Sbjct: 287 PDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFL 346

Query: 68  LKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L+ +  + G  P+ +TY+ ++    R +++    E +  M  +    +   Y ++I    
Sbjct: 347 LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 406

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+  A + ++ MV   V+  + ++N++I   C+ G ++ A+ LL  M   G E    
Sbjct: 407 KAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMV 466

Query: 187 THTILIDGLCKAGNIKGARLHLEYMN----KIGFDSNL---EAYNCIVDRLGKDGKIDHA 239
           T+T L++G  + G ++ A    E M     K    +NL   +A++ ++  L K  +ID A
Sbjct: 467 TYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKA 526

Query: 240 INVFESMEVKDSFTYS----SMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + V E +  ++         ++V  L +A R   A KL+ S  K G+
Sbjct: 527 MAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 101/218 (46%), Gaps = 7/218 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++I++ G  + +    A    + +      P  VTY+ LI GLCKAGR+  A 
Sbjct: 356 IDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAM 415

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK + +    P+  T+ +++    R        ++L AM   G       Y T++  F
Sbjct: 416 EVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGF 475

Query: 126 VKIGRLKEATDYMEQM----VTDGVQLDIV---SYNTLINLYCKEGKLEAAYLLLDEMEK 178
            + GR++ A +  E M           ++V   +++ LI   CK  +++ A  +++E+  
Sbjct: 476 SRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRS 535

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           +  E  +     ++DGL +AG  + A   +  ++K+G 
Sbjct: 536 RECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q  +V++  +I+ +CK  +L+ A    ++M ++    ++ T+ ++++GLCKA     A  
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 207 HLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHN 260
            L+ M +      +L  Y+ +++   K G++D A  +   M  +D       TY+S+V  
Sbjct: 63  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           LC+  ++  A +++      GV   K    A++ G  ++    EA K+  +I
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEI 174


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 144/276 (52%), Gaps = 9/276 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G CK    ++A+ +F  +++ G   + VTYN L+ GLC +GR   A  +
Sbjct: 172 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARL 231

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++++      PN IT+T ++    +  K+   +++   M R+    D F Y ++I     
Sbjct: 232 MRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM 291

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA   ++ MVT G   D+V+YNTLIN +CK  +++    L  EM ++G   D  T
Sbjct: 292 HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT 351

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I G  +AG    A+   E  +++    N+  Y+ ++  L  + +++ A+ +FE+M+
Sbjct: 352 YNTIIQGYFQAGRPDAAQ---EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQ 408

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL--LSC 277
                 D  TY+ ++H +CK   +  A  L   LSC
Sbjct: 409 KSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSC 444



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + ++NG C+     +A+ +   +++ GF P++V YN +I G CK G +  A  +
Sbjct: 137 PDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVEL 196

Query: 68  LKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +   G   +A+TY +++   CC  + ++     ++  M  +    +   +  VI  F
Sbjct: 197 FDRMERDGVRADAVTYNSLVAGLCC--SGRWSDAARLMRDMVMRDIVPNVITFTAVIDVF 254

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK G+  EA    E+M    V  D+ +YN+LIN  C  G+++ A  +LD M  +G   D 
Sbjct: 255 VKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDV 314

Query: 186 YTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            T+  LI+G CK+  + +G +L  E M + G   +   YN I+    + G+ D A  +F 
Sbjct: 315 VTYNTLINGFCKSKRVDEGTKLFRE-MAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFS 373

Query: 245 SMEVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            M+ + +  TYS +++ LC   R+  A  L  +  KS + +  +    V+ G+
Sbjct: 374 RMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGM 426



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 157/317 (49%), Gaps = 6/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    F+ +L+ + K++  D  + +F  ++  G   +L +YNI+I  LC+  R
Sbjct: 60  MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 119

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
              A  ++ ++   G+ P+ +T ++++   C  NR +   ++++S M+  G+  D   Y 
Sbjct: 120 FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFD-AIDLVSKMEEMGFRPDVVIYN 178

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I    KIG + +A +  ++M  DGV+ D V+YN+L+   C  G+   A  L+ +M  +
Sbjct: 179 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR 238

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               +  T T +ID   K G    A    E M +   D ++  YN +++ L   G++D A
Sbjct: 239 DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEA 298

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             + + M  K    D  TY+++++  CK+KR+   +KL     + G+         ++ G
Sbjct: 299 KQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 358

Query: 296 LRHSGCRREAKKIQSKI 312
              +G    A++I S++
Sbjct: 359 YFQAGRPDAAQEIFSRM 375



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 123/247 (49%), Gaps = 3/247 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P   TF  +++   K      A++++  + +    P++ TYN LI GLC  GR
Sbjct: 235 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR 294

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L  +   G  P+ +TY T++    ++++   G ++   M ++G   D   Y T
Sbjct: 295 VDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNT 354

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + + GR   A +   +M +   + +I +Y+ L+   C   ++E A +L + M+K  
Sbjct: 355 IIQGYFQAGRPDAAQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE 411

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D  T+ I+I G+CK GN++ A      ++  G   ++ +Y  ++    +  + D + 
Sbjct: 412 IELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSD 471

Query: 241 NVFESME 247
            ++  M+
Sbjct: 472 LLYRKMQ 478



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 3/174 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG CK++  D   ++FR + + G V + +TYN +I+G  +AGR   A+ I
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + DS   PN  TY+ ++     N + +  L +   M++     D   Y  VI    K
Sbjct: 372 FSRM-DS--RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCK 428

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           IG +++A D    +   G++ D+VSY T+I+ +C++ + + + LL  +M++ G 
Sbjct: 429 IGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 90/221 (40%), Gaps = 39/221 (17%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L+E  D   +M+       IV ++ +++   K    +    L   ME  G   D Y++ I
Sbjct: 50  LEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNI 109

Query: 191 LIDGLCK------AGNIKGARLHLEY-----------------------------MNKIG 215
           +I+ LC+      A ++ G  +   Y                             M ++G
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 169

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
           F  ++  YN I+D   K G ++ A+ +F+ ME      D+ TY+S+V  LC + R   A+
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 229

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +L+   +   +        AV+D     G   EA K+  ++
Sbjct: 230 RLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM 270



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 39/68 (57%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+NI+++G+CK    ++A  +FR L   G  P++V+Y  +I G C+  +   +  + ++
Sbjct: 417 TTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRK 476

Query: 71  LGDSGHAP 78
           + + G  P
Sbjct: 477 MQEDGLLP 484


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 152/313 (48%), Gaps = 6/313 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ ++ G C      +A R+F  +      P+  T+NIL+  LCK G+
Sbjct: 219 MIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGK 278

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           ++ A+ ++  +   G  P  +TY T+M   C  N   K    +LS + R     +   Y 
Sbjct: 279 IKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGK-AKHVLSIISRMRVAPNSRSYN 337

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I  F KI  + EA     +M   G+    V+YN+LI+  CK G++  A+ L+DEM   
Sbjct: 338 IMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNN 397

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D  T+  LID  CK  ++  A   ++ + + G   N+  YN ++D L K G++ +A
Sbjct: 398 CIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNA 457

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +VF+ + +K    +++TY+ M++ LCK      A  LL     +G+       + ++  
Sbjct: 458 QDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQA 517

Query: 296 LRHSGCRREAKKI 308
           L H     +A+K+
Sbjct: 518 LFHKDENEKAQKL 530



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 145/288 (50%), Gaps = 4/288 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFNI+++ LCK      A  +   + K G  P +VTYN L+ G C    
Sbjct: 254 MVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNE 313

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L  +     APN+ +Y  ++    + +     L +   M  +G       Y +
Sbjct: 314 VGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNS 373

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+  A + +++M  + +  DIV+YN+LI+++CK   ++ A  L+ ++++ G
Sbjct: 374 LIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHG 433

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+ ILIDGLCK G +K A+   + +   G++ N   YN +++ L K+G  D A 
Sbjct: 434 IQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAE 493

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +   ME    + D+ TY +++  L        A KLL   +  GV +
Sbjct: 494 VLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVVV 541



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 155/341 (45%), Gaps = 39/341 (11%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I++NGLCK   T  AL++ R ++       +V Y+ +I GLCK   +  A  +  E
Sbjct: 159 VTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSE 218

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +      P  +T+++++       K+K    + + M  K    D + +  ++ A  K G+
Sbjct: 219 MIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGK 278

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTL---------------------------------- 156
           +KEA + +  M+ +GV+  +V+YNTL                                  
Sbjct: 279 IKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNI 338

Query: 157 -INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            IN +CK   ++ A  L  EM  +G    K T+  LIDGLCKAG I  A   ++ M+   
Sbjct: 339 MINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNC 398

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
             +++  YN ++D   K+  +D AI + + ++      +  TY+ ++  LCK  +L +A 
Sbjct: 399 IPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQ 458

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            +    L  G  +       +++GL   G   EA+ + SK+
Sbjct: 459 DVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKM 499



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 134/302 (44%), Gaps = 40/302 (13%)

Query: 4   GDLTPCTATF-NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           G +T   + F  I+  GLC N   + AL     +   GF    VTY ILI GLCK G+ R
Sbjct: 116 GQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTR 175

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +L+++       N + Y+TI+                             G C   
Sbjct: 176 AALQVLRQIEGKLVNTNVVMYSTIID----------------------------GLC--- 204

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K   + +A     +M+   +   +V++++LI  +C  GK + A+ L +EM  +   
Sbjct: 205 ----KDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNIN 260

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKIDHA 239
            D YT  IL+D LCK G IK A+  +  M K G +  +  YN ++D    + + GK  H 
Sbjct: 261 PDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHV 320

Query: 240 INVFESMEV-KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           +++   M V  +S +Y+ M++  CK K +  A  L       G+   K    +++DGL  
Sbjct: 321 LSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCK 380

Query: 299 SG 300
           +G
Sbjct: 381 AG 382



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI+++GLCK     NA  +F+ L   G+     TYNI+I GLCK G    A 
Sbjct: 434 IQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAE 493

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
            +L ++ D+G  P+A+TY TI++  F   + +   ++L  M  KG     F
Sbjct: 494 VLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVVVYAF 544


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 140/279 (50%), Gaps = 2/279 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NGLC+ R  D A +M R + KHG  P  V+Y  L+ GLCK G    AR +
Sbjct: 441 PDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREM 500

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +    +    PNAITY+ +M    R  K     +++  M +KG+         +I +  +
Sbjct: 501 MNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQ 560

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ EA  +MEQ + +G  +++V++ T+I+ +C++  LEAA  LLD+M       D  T
Sbjct: 561 EEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVT 620

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +ID L K G I+ A      M ++G       Y  ++ +  + G+++  + + E M 
Sbjct: 621 YTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKML 680

Query: 248 VKDS--FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +      Y+ ++  LC    L  A KLL   L++  +I
Sbjct: 681 SRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKI 719



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 143/282 (50%), Gaps = 5/282 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+N ++ G C     ++A+ +   +   G  P+ ++Y  ++  LCK  R++  
Sbjct: 297 EIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEV 356

Query: 65  RWIL-KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           R ++ K L DS   P+ +TY T +    ++      LE L   + + +  D  GY  ++ 
Sbjct: 357 RLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVH 416

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +F + GR+ +A + + +M + G   D+V+Y ++IN  C+E K++ A  +L +M K G + 
Sbjct: 417 SFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKP 476

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  ++T L++GLCK GN   AR  +    +  +  N   Y+ ++    ++GK   A ++ 
Sbjct: 477 NTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLV 536

Query: 244 ESMEVKDSFTYSS----MVHNLCKAKRLPSASKLLLSCLKSG 281
             M  K  F        ++ +LC+ +++  A + +  CL +G
Sbjct: 537 REMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNG 578



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 142/304 (46%), Gaps = 6/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +++  C+    D A  +   +   G +P++VTY  +I GLC+  ++  A+ +L+++ 
Sbjct: 411 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMY 470

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN ++YT ++    +N       E+++  +   +  +   Y  ++  F + G+  
Sbjct: 471 KHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSS 530

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D + +M+  G     V  N LI   C+E K++ A   +++    G   +    T +I
Sbjct: 531 EACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVI 590

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EV 248
            G C+  +++ A   L+ M       ++  Y  I+D LGK G+I+ A  +   M     +
Sbjct: 591 HGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLI 650

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               TY +++H  C+  R+    KLL   L    +  ++A   V++ L   G   +A K+
Sbjct: 651 PTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKL 708

Query: 309 QSKI 312
             K+
Sbjct: 709 LGKV 712



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 141/303 (46%), Gaps = 8/303 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            +L P   T+N  ++ L K+ + D AL   R  ++  F  + V Y+ ++   C+ GR+  
Sbjct: 367 SNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDK 426

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A+ I+ E+   G  P+ +TYT+++    + RK     ++L  M + G   +   Y  ++ 
Sbjct: 427 AKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLN 486

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G   EA + M     D    + ++Y+ L++ + +EGK   A  L+ EM K+GF  
Sbjct: 487 GLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFP 546

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
                 +LI  LC+   +  A+  +E     G   N+  +  ++    +   ++ A+++ 
Sbjct: 547 TPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLL 606

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M +     D  TY++++  L K  R+  A+KL +  L+ G+       + V+    H 
Sbjct: 607 DDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVI----HQ 662

Query: 300 GCR 302
            CR
Sbjct: 663 YCR 665



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 5/241 (2%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           NA+R+   +QK G  P+L   N  I  L    RL  A   L+ +      PN ITY  ++
Sbjct: 250 NAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLI 309

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K      + +  +E+++ M  KG + D   Y TV+    K  R+KE    ME+M+ D   
Sbjct: 310 KGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNL 369

Query: 148 L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           L D V+YNT +++  K G  + A   L E E++ F  DK  ++ ++   C+ G +  A+ 
Sbjct: 370 LPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKE 429

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
            +  M   G   ++  Y  +++ L ++ K+D A  +   M       ++ +Y+++++ LC
Sbjct: 430 IVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLC 489

Query: 263 K 263
           K
Sbjct: 490 K 490



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D    P A  Y  +M    R  K +  + +L+ M++ G   D     T I   V   RL 
Sbjct: 227 DPIRRPEAFGY--VMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLD 284

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A  ++E+M    ++ ++++YN LI  YC   +LE A  L+ EM  +G   DK ++  ++
Sbjct: 285 KAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVM 344

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAINVFESMEV 248
             LCK   IK  RL +E M K   DSNL      YN  V  L K G  D A+      E 
Sbjct: 345 GFLCKEKRIKEVRLLMEKMLK---DSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEE 401

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           +    D   YS++VH+ C+  R+  A +++      G         +V++GL       +
Sbjct: 402 RRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQ 461

Query: 305 AKKI 308
           AKK+
Sbjct: 462 AKKM 465



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 29  ALRMF-----RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AIT 82
           ALR F     +   +H  +     +  ++    +AG+LR A  +L  +  +G  P+ +I 
Sbjct: 211 ALRFFYWADRQWRYRHDPIRRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSIC 270

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
            T I      NR  K  +  L  M+      +   Y  +I  +  + RL++A + + +M 
Sbjct: 271 NTAIHVLVMGNRLDK-AVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMP 329

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNI 201
             G   D +SY T++   CKE +++   LL+++M K      D+ T+   +  L K G+ 
Sbjct: 330 FKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHG 389

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
             A   L    +  F  +   Y+ IV    ++G++D A  +   M     + D  TY+S+
Sbjct: 390 DEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSV 449

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           ++ LC+ +++  A K+L    K G +    +  A+++GL  +G   EA+++
Sbjct: 450 INGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREM 500



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 2/199 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P     N+++  LC+    D A R       +G    +V +  +I G C+   
Sbjct: 539 MIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDD 598

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L ++  S   P+ +TYTTI+    +  + +   ++   M R G       Y T
Sbjct: 599 LEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRT 658

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  + ++GR+++    +E+M++   Q    +YN +I   C  G LE AY LL ++ +  
Sbjct: 659 VIHQYCRMGRVEDLLKLLEKMLSR--QECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTA 716

Query: 181 FECDKYTHTILIDGLCKAG 199
            + D  T  +LI+     G
Sbjct: 717 SKIDANTCHMLIESYLSKG 735


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 141/290 (48%), Gaps = 23/290 (7%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P TATF  ++ G+C       AL +F  +   GF P++VTY  LI GLCK G    A  +
Sbjct: 129 PDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRL 188

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +      PN   Y TI+    ++R+      + S M  KG + D F Y ++I A   
Sbjct: 189 LGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCN 248

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K     + +MV   +  D+VS+NT+++  CKEGK+  A+ ++D+M ++G E +  T
Sbjct: 249 LCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVT 308

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN------ 241
           +T L+DG C    +  A    + M   G   N+ +YN +++   K  +ID AI+      
Sbjct: 309 YTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMD 368

Query: 242 -------------VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
                        VF++M  K    +  +Y+++++  CK +R+  A  L 
Sbjct: 369 XXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLF 418



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 132/269 (49%), Gaps = 4/269 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T +I++N  C       A  +   + K G  P+  T+  LI+G+C  G++  A 
Sbjct: 92  IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEAL 151

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  P+ +TY T++    +       + +L +M +K    + F Y T+I + 
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA +   +MVT G+  DI +YN+LI+  C   + +    LL+EM       D 
Sbjct: 212 CKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDV 271

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +   ++D LCK G +  A   ++ M + G + N+  Y  ++D      ++D A+ VF++
Sbjct: 272 VSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDT 331

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSA 270
           M  K    +  +Y+++++  CK +R+  A
Sbjct: 332 MVCKGCMPNVISYNTLINGYCKIQRIDKA 360



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN +L  + K ++    L +   +   G  P + T +ILI   C   R+  A  +
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+  T+TT+++      K    L +   M  +G+  D   Y T+I    K
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G    A   +  MV    Q ++ +YNT+I+  CK+ ++  A+ L  EM  +G   D +T
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI  LC     K     L  M       ++ ++N +VD L K+GK+  A +V + M 
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMI 298

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    +  TY++++   C    +  A K+ 
Sbjct: 299 QRGVEPNVVTYTALMDGHCLLSEMDEAVKVF 329



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 144/298 (48%), Gaps = 25/298 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T  A+R+   + +    P +  YN +I  LCK  +
Sbjct: 157 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQ 216

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+   G +P+  TY +++       ++K    +L+ M       D   + T
Sbjct: 217 VTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNT 276

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G++ EA D +++M+  GV+ ++V+Y  L++ +C   +++ A  + D M  +G
Sbjct: 277 VVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG 336

Query: 181 FECDKYTHTILIDGLCKAGNIKGA------------RLHLEYMNKIGFDS--------NL 220
              +  ++  LI+G CK   I  A             L+++   K+ FD+        N+
Sbjct: 337 CMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKV-FDTMVCKGCMPNV 395

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +YN +++   K  +ID A+ +F  M     + D+ TYS+++H LC  +RL  A  L 
Sbjct: 396 ISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALF 453



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 4/240 (1%)

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
            P+ + +  ++    + + +   L +   M   G   + +    +I +F  + R+  A  
Sbjct: 58  PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFS 117

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
            + +++  G Q D  ++ TLI   C EGK+  A  L D+M  +GF  D  T+  LI+GLC
Sbjct: 118 VLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLC 177

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSF 252
           K GN   A   L  M +     N+ AYN I+D L KD ++  A N+F  M  K    D F
Sbjct: 178 KVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIF 237

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           TY+S++H LC        + LL   + S +     +   VVD L   G   EA  +  K+
Sbjct: 238 TYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKM 297



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 139/331 (41%), Gaps = 23/331 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  +++G C     D A+++F  +   G +P +++YN LI G CK  R
Sbjct: 297 MIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQR 356

Query: 61  -------------------LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
                              +  A  +   +   G  PN I+Y T++    + ++    + 
Sbjct: 357 IDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMY 416

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +   M R+    D   Y T+I     + RL++A     +MV      ++V+Y  L++  C
Sbjct: 417 LFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLC 476

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K   L  A  LL  +E    + D   + I IDG+C+AG ++ AR     ++  G   ++ 
Sbjct: 477 KNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVW 536

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            Y+ +++ L + G +D A  +F  M+      +   Y+++     +      A +LL   
Sbjct: 537 TYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEM 596

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +  G     S     V  L   G  +  K+I
Sbjct: 597 VARGFSADASTMTLFVKMLSDDGLDQSLKQI 627


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ B+G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 227 ELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 113/213 (53%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR+  A  I
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEI 263

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++      P+ ITY T++    +    K   +++  M  KG   D   Y T+I    K
Sbjct: 264 YRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCK 323

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A +Y ++M+ + ++ D V+Y  LI+  C+EG+   A  +L EM   G + +  T
Sbjct: 324 EGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           +T++I+  CK G++      L+ M + G+  N+
Sbjct: 384 YTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNV 416



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+   CK G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + S M+  G   D + Y  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A   ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 96/181 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ ++R +     +P+L+TYN LI GLCK G 
Sbjct: 232 MLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGD 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+ ITYTT++    +    +   E    M ++    D   Y  
Sbjct: 292 LKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTA 351

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ +I +Y  +IN  CK+G +     LL EM++ G
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXG 411

Query: 181 F 181
           +
Sbjct: 412 Y 412



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ PN +T
Sbjct: 407 MQRXGYVPNVVT 418


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 164/340 (48%), Gaps = 34/340 (10%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI---- 67
           T+N++L  LCKN   D A ++   +   G +P+ V+Y  ++  +C+ G++  AR +    
Sbjct: 180 TYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRI 239

Query: 68  --------------------------LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
                                       E+   G  P+ ITY+T++         ++ L 
Sbjct: 240 KSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALA 299

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +L+ M  +G + +   + +++  +   GRL EA D   +M+ +G + + V+YNTLI+  C
Sbjct: 300 VLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLC 359

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
             GK+  A  +  +ME+ G   ++ T++ LIDG  KAG++ GA      M   G   N+ 
Sbjct: 360 SYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVV 419

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            Y C+VD L ++   +HA+++ E+M       ++ T+++ +  LC + +   A K+L   
Sbjct: 420 VYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQM 479

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            + G     +    V+DGL ++   REA +I  +I   +I
Sbjct: 480 RQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEI 519



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 5/253 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    +  M++ LC+N   ++AL +   +      P  +T+N  IKGLC +G+
Sbjct: 409 MITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGK 468

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L ++   G APN  TY  ++   F  ++ +  L+I+  ++      +   Y T
Sbjct: 469 TEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNT 528

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F   G  K A     +++  G + D ++YNT+I  YCK+G+++ A  L+D + K+G
Sbjct: 529 ILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKG 588

Query: 181 F-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV----DRLGKDGK 235
               D +T+T L+ G+C    +  A +HL+ M   G   N   +N +V     +LG  G 
Sbjct: 589 EGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGLFSKLGHLGP 648

Query: 236 IDHAINVFESMEV 248
           I    N+  + +V
Sbjct: 649 IHIVDNILANGKV 661



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 125/287 (43%), Gaps = 4/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T++ ++N L +    + AL +   +   G  P + T+  L+KG    GR
Sbjct: 269 MAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGR 328

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +   +   G  PN + Y T++       K    + +   M+R G   +   Y T
Sbjct: 329 LCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYST 388

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K G L  A++   +M+T+G   ++V Y  ++++ C+      A  L++ M    
Sbjct: 389 LIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGN 448

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T    I GLC +G  + A   L  M + G   N+  YN ++D L    +   A+
Sbjct: 449 CPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREAL 508

Query: 241 NV---FESMEVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +    E ME+K +  TY++++   C A     A ++    L  G +
Sbjct: 509 QIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTK 555



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 139/335 (41%), Gaps = 34/335 (10%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  M+  L   R  D    + + ++  G       + I+I    +AG    A      +
Sbjct: 75  TYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRI 134

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           G+ G  P+   Y  ++       K+++   I + MKR G   + + Y  ++ A  K  R+
Sbjct: 135 GEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRV 194

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTL------------------------------INLYC 161
             A   + +M   G   D VSY T+                              IN +C
Sbjct: 195 DAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFC 254

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           +E K+E  + L +EM  +G + D  T++ +I+ L + GN++ A   L  M   G   N+ 
Sbjct: 255 REHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVH 314

Query: 222 AYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            +  ++      G++  A++++  M       ++  Y++++H LC   ++  A  +    
Sbjct: 315 TFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKM 374

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            ++GV   ++    ++DG   +G    A +I +K+
Sbjct: 375 ERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKM 409



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++Y T+I     E  ++    LL  M+ +G  C++    I+I+   +AG  + A      
Sbjct: 74  LTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYR 133

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           + + G   +++ YN ++D L  + K      ++ +M+      + +TY+ ++  LCK  R
Sbjct: 134 IGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDR 193

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           + +A KLL      G      +   VV  +   G   EA+++  +I+
Sbjct: 194 VDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIK 240


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 5/272 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARW 66
           P   ++  ++NGLCK    D A  +FR +   G   P   TYN L+ GLCK  RL  AR 
Sbjct: 94  PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 153

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E      AP+ +TY T+M   F+  +    L   + M  +GY      +  +I    
Sbjct: 154 VITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 213

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  RL +A +   +M+      ++V+Y+ +I+  CK  +L+ A  LLD M  +G   D  
Sbjct: 214 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 273

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +T L+ G   AG +  A   L  M   G   ++  Y  ++D+L K G++D A  +F  +
Sbjct: 274 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 333

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
                  +  TYS+++   C+A R+    K++
Sbjct: 334 VANKCSPNVVTYSALIGGYCRASRVDEGGKVM 365



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 137/269 (50%), Gaps = 6/269 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           T +I+L GLC+      AL  F   L+     P++V+Y  LI GLCK GR+  A  + ++
Sbjct: 62  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 121

Query: 71  LGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +  +G   PNA TY  ++    +  +      +++  +++ +  D   Y T++AA  ++G
Sbjct: 122 MVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLG 181

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+ EA     QM  +G    +VS+N +I   C+  +L  A  + +EM  + F  +  T++
Sbjct: 182 RVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYS 241

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           ++IDGLCK+  +  A+  L+ M   G   +L AY  +V      G++D A+ +   M   
Sbjct: 242 VVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ 301

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             + D  TY+ ++  LCK  R+  A ++ 
Sbjct: 302 GCIPDVVTYTVVIDKLCKVGRVDDAHEIF 330



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 128/264 (48%), Gaps = 1/264 (0%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   T+N +++GLCK    D A  +    +K  F P++VTYN L+  L + GR+  
Sbjct: 126 GGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDE 185

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A     ++ + G+ P  +++  I+    R R+    LE+ + M  + +  +   Y  VI 
Sbjct: 186 ALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVID 245

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K  +L EA   +++MV++G + D+V+Y  L+  +   G+L++A  LL  M  QG   
Sbjct: 246 GLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP 305

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+T++ID LCK G +  A      +       N+  Y+ ++    +  ++D    V 
Sbjct: 306 DVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVM 365

Query: 244 ESMEVKDS-FTYSSMVHNLCKAKR 266
             M  + +  TY++M+  L    R
Sbjct: 366 REMACRPNVVTYNTMIWGLSMVDR 389



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 3/188 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D  P   T++++++GLCK+   D A ++   +   G  P+LV Y  L+ G   AGR
Sbjct: 228 MIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGR 287

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A  +L+ +   G  P+ +TYT ++    +  +     EI   +     + +   Y  
Sbjct: 288 LDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSA 347

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + +  R+ E    M +M     + ++V+YNT+I       + E AY +  EM + G
Sbjct: 348 LIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECG 404

Query: 181 FECDKYTH 188
           F  D  T+
Sbjct: 405 FVPDARTY 412



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 6/135 (4%)

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V+YN LI  +C    L+AA+ LL EM+ +G +C+  T +I++ GLC+ G +  A  H + 
Sbjct: 26  VTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDA 85

Query: 211 MNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-----KDSFTYSSMVHNLCKA 264
             ++     ++ +Y  +++ L K G++D A ++F  M        ++FTY+++V  LCK 
Sbjct: 86  SLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQ 145

Query: 265 KRLPSASKLLLSCLK 279
            RL +A  ++    K
Sbjct: 146 DRLDAARAVITEARK 160


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 160/344 (46%), Gaps = 36/344 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF +++  LC     DNA  + R + KHG VP  V Y  LI  L K  R
Sbjct: 199 MLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDR 258

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-- 118
           +  A  +L+E+   G  P+  T+  ++    R  +   G +++  M  +G+T +   Y  
Sbjct: 259 VNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGV 318

Query: 119 -----CTV------------------------IAAFVKIGRLKEATDYM-EQMVTDGVQL 148
                C V                        I  +VK GRL EA  ++ ++M+ +G + 
Sbjct: 319 LMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRP 378

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+ ++NTLI+  CK+G + +A  ++++M   G   +  T+T L+DG CK   ++ A   L
Sbjct: 379 DVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVL 438

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M+  GF+ N+  YN ++  L K+GK+  A+++   M  K    D FT+++++  LCK 
Sbjct: 439 NEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKV 498

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            R   A  L    L  GV         ++      G  +EA K+
Sbjct: 499 DRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKL 542



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 144/307 (46%), Gaps = 39/307 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN +++GLCK     +A+ M   +  +G  P L+TY  L+ G CK  +L  A ++
Sbjct: 378 PDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYV 437

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDG--FGYC- 119
           L E+   G   N + Y  +++   +N K    L++L  M  KG     +TF+   FG C 
Sbjct: 438 LNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCK 497

Query: 120 ---------------------------TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
                                      T+I AF++ G ++EA   +  M+  G  LD ++
Sbjct: 498 VDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEIT 557

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN LI  +CK G  E A  L DEM ++       +  +LI+GLC+ G +  A   L  M 
Sbjct: 558 YNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMI 617

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
             G   ++  YN +++ L K G I  A N+F  ++ +    D+ TY++++   C+A    
Sbjct: 618 HRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFD 677

Query: 269 SASKLLL 275
            A  LLL
Sbjct: 678 DAYLLLL 684



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 161/318 (50%), Gaps = 7/318 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNA-LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           TP    F I++NG  K+   D A   ++  + K+G  P++ T+N LI GLCK G + +A 
Sbjct: 341 TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAV 400

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++ ++  +G  PN ITYTT++   C +N+  + G  +L+ M  KG+  +  GY  ++ A
Sbjct: 401 DMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGY-VLNEMSAKGFELNIMGYNVLLRA 459

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G++ +A D + +M   G + DI ++NTLI   CK  + E A  L  +M   G   +
Sbjct: 460 LCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIAN 519

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  LI    + G I+ A   +  M   G   +   YN ++    K G  + A+ +F+
Sbjct: 520 TVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFD 579

Query: 245 SMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M  KD    + + + +++ LC+  ++ +A +LL   +  G+        ++++GL   G
Sbjct: 580 EMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMG 639

Query: 301 CRREAKKIQSKIRMAKIS 318
             REA  + +K++   I 
Sbjct: 640 NIREAFNLFNKLQAEGIQ 657



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 122/255 (47%), Gaps = 4/255 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N++L  LCKN     AL M   +   G  P++ T+N LI GLCK  R   A  + +++ 
Sbjct: 453 YNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDML 512

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G   N +TY T++    R    +  L++++ M  +G   D   Y  +I AF K+G  +
Sbjct: 513 LDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATE 572

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A    ++MV   +    +S N LIN  C+ GK+  A  LL +M  +G   D  T+  LI
Sbjct: 573 KALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLI 632

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEV 248
           +GLCK GNI+ A      +   G   +   YN ++    + G  D A    +   E+  +
Sbjct: 633 NGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFI 692

Query: 249 KDSFTYSSMVHNLCK 263
            +  T+  +V N  K
Sbjct: 693 PNDVTWYILVSNFIK 707



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N +++   +      AL++   +   G   + +TYN LIK  CK G    A  +  
Sbjct: 520 TVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFD 579

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+      P+ I+   ++    R  K    LE+L  M  +G   D   Y ++I    K+G
Sbjct: 580 EMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMG 639

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++EA +   ++  +G+Q D ++YNTLI  +C+ G  + AYLLL    +  F  +  T  
Sbjct: 640 NIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWY 699

Query: 190 ILIDGLCK 197
           IL+    K
Sbjct: 700 ILVSNFIK 707



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  DL P   + N+++NGLC+     NAL + R +   G  P++VTYN LI GLCK G 
Sbjct: 581 MVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGN 640

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM 87
           +R A  +  +L   G  P+AITY T++
Sbjct: 641 IREAFNLFNKLQAEGIQPDAITYNTLI 667



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N ++NGLCK      A  +F  LQ  G  P+ +TYN LI   C+AG 
Sbjct: 616 MIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGM 675

Query: 61  LRTARWILKELGDSGHAPNAITY 83
              A  +L    ++   PN +T+
Sbjct: 676 FDDAYLLLLRGVENAFIPNDVTW 698



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 99/233 (42%), Gaps = 9/233 (3%)

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV---QLDI 150
           +++K+  ++L  +K +G  F    +  ++  + +     +AT  +  M   GV   +   
Sbjct: 116 KEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDM--KGVYCCEPTF 173

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            SYN ++++         A  +  EM  +G     YT  +++  LC    +  A   L  
Sbjct: 174 KSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRD 233

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M K G   N   Y  ++  L K  +++ A+ + E M +     D  T++ +++ LC+  R
Sbjct: 234 MTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNR 293

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
           +   +KL+   L  G          +++GL   G   EA+ + +K+      H
Sbjct: 294 IHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVH 346


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           IM+ GLCK    +   ++       G +P ++ YN LI G CK G +  A  +  EL   
Sbjct: 209 IMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLK 268

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P   TY  I+    +   +K    +L  M  +G T +   Y T+I A  K G + +A
Sbjct: 269 GFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKA 328

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
            + +E M+  G + DIV+YNTLI+  C++GK+  A  LL++   +G   +K+++T LI  
Sbjct: 329 VETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHA 388

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKD 250
            CK G    A   L  M + G   +L  Y  +V  L   G++D A+ + E M       D
Sbjct: 389 YCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPD 448

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +  Y+ ++  LCK  +LP+A  LL   L   V         +VDG   +G   EA+K+
Sbjct: 449 AGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKL 506



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 143/306 (46%), Gaps = 4/306 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++  +++  CK    D A      + + G  P+LVTY  L+ GL  AG +  A 
Sbjct: 375 LMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVAL 434

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I +++ + G  P+A  Y  +M    +  K      +L+ M  +    D F Y T++  F
Sbjct: 435 TIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGF 494

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++ G L EA    E  +  G+   IV YN +I  YCK G ++ A   ++ M+K+    D+
Sbjct: 495 IRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDE 554

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T++ +IDG  K  ++ GA+     M K+    N+  Y  +++   + G +  ++ +F  
Sbjct: 555 FTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFRE 614

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+    V +  TYS ++ + CK  +L  A+      L +           +V+G   +G 
Sbjct: 615 MQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGT 674

Query: 302 RREAKK 307
           R  ++K
Sbjct: 675 RAISEK 680



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 128/278 (46%), Gaps = 4/278 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT     +N +++   K+ +   A+    G+ + G  P++VTYN LI G C+ G++  A 
Sbjct: 305 LTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEAD 364

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L++    G  PN  +YT ++    +   Y      L  M  +G+  D   Y  ++   
Sbjct: 365 QLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGL 424

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           V  G +  A    E+M+  GV  D   YN L++  CK+ KL AA LLL EM  Q    D 
Sbjct: 425 VVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDA 484

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + +  L+DG  + GN+  AR   E   + G +  +  YN ++    K G +  A+     
Sbjct: 485 FVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINR 544

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           M+      D FTYS+++    K   L  A K+    +K
Sbjct: 545 MKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVK 582



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G CK    + A  +F  L+  GF+P + TY  +I G CK G  +    +
Sbjct: 237 PNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRL 296

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G   N   Y TI+   +++      +E +  M   G   D   Y T+I+   +
Sbjct: 297 LMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCR 356

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ EA   +EQ +  G+  +  SY  LI+ YCK+G  + A   L EM ++G + D  T
Sbjct: 357 DGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVT 416

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVF 243
           +  L+ GL  AG +  A    E M + G   +   YN ++  L K  K+  A      + 
Sbjct: 417 YGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEML 476

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +   + D+F Y+++V    +   L  A KL    ++ G+        A++ G    G  +
Sbjct: 477 DQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMK 536

Query: 304 EA 305
           +A
Sbjct: 537 DA 538



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 135/304 (44%), Gaps = 40/304 (13%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRT 63
           +++P     +I++     +   + AL ++   L+ + + P+++  N L+  L K GR+  
Sbjct: 124 EMSPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEI 183

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           AR +  E+                            LEI  A  R     D +  C ++ 
Sbjct: 184 ARKLYDEM----------------------------LEIDGAGDR---CVDNYSTCIMVK 212

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G+L+E    +E     G   +I+ YNTLI+ YCK+G +E A  L  E++ +GF  
Sbjct: 213 GLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLP 272

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              T+  +I+G CK G+ K     L  MN  G   N++ YN I+D   K G I  A+   
Sbjct: 273 TVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETI 332

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M       D  TY++++   C+  ++  A +LL   L  G+   K +   ++    H+
Sbjct: 333 EGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLI----HA 388

Query: 300 GCRR 303
            C++
Sbjct: 389 YCKQ 392



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 122/284 (42%), Gaps = 18/284 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +  +++G  +N   D A ++F    + G  P +V YN +IKG CK G 
Sbjct: 475 MLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGM 534

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A   +  +     AP+  TY+T++    +        ++   M +     +   Y +
Sbjct: 535 MKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTS 594

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F + G L  +     +M   G+  ++V+Y+ LI  +CKE KL  A    +EM    
Sbjct: 595 LINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNK 654

Query: 181 FECDKYTHTILIDGLCKAG----NIKGARLH-------LEYMNKI---GFDSNLEAYNCI 226
              +  T   L++G  K G    + KG           L +  ++   G+     AYN I
Sbjct: 655 CVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSI 714

Query: 227 VDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           +  L + G    A+ +   M     + DS ++ +++H +C   R
Sbjct: 715 LICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGR 758


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 5/272 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARW 66
           P   ++  ++NGLCK    D A  +FR +   G   P   TYN L+ GLCK  RL  AR 
Sbjct: 44  PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 103

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E      AP+ +TY T+M   F+  +    L   + M  +GY      +  +I    
Sbjct: 104 VIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 163

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  RL +A +   +M+      ++V+Y+ +I+  CK  +L+ A  LLD M  +G   D  
Sbjct: 164 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 223

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +T L+ G   AG +  A   L  M   G   ++  Y  ++D+L K G++D A  +F  +
Sbjct: 224 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 283

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
                  +  TYS+++   C+A R+    K++
Sbjct: 284 VANKCSPNVVTYSALIGGYCRASRVDEGGKVM 315



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 137/269 (50%), Gaps = 6/269 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           T +I+L GLC+      AL  F   L+     P++V+Y  LI GLCK GR+  A  + ++
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71

Query: 71  LGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +  +G   PNA TY  ++    +  +      +++  +++ +  D   Y T++AA  ++G
Sbjct: 72  MVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLG 131

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+ EA     QM  +G    +VS+N +I   C+  +L  A  + +EM  + F  +  T++
Sbjct: 132 RVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYS 191

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           ++IDGLCK+  +  A+  L+ M   G   +L AY  +V      G++D A+ +   M   
Sbjct: 192 VVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ 251

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             + D  TY+ ++  LCK  R+  A ++ 
Sbjct: 252 GCIPDVVTYTVVIDKLCKVGRVDDAHEIF 280



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 128/264 (48%), Gaps = 1/264 (0%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   T+N +++GLCK    D A  +    +K  F P++VTYN L+  L + GR+  
Sbjct: 76  GGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDE 135

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A     ++ + G+ P  +++  I+    R R+    LE+ + M  + +  +   Y  VI 
Sbjct: 136 ALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVID 195

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K  +L EA   +++MV++G + D+V+Y  L+  +   G+L++A  LL  M  QG   
Sbjct: 196 GLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP 255

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+T++ID LCK G +  A      +       N+  Y+ ++    +  ++D    V 
Sbjct: 256 DVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVM 315

Query: 244 ESMEVKDS-FTYSSMVHNLCKAKR 266
             M  + +  TY++M+  L    R
Sbjct: 316 REMACRPNVVTYNTMIWGLSMVDR 339



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 41/260 (15%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSA 105
           T +I+++GLC+ GR+  A        +  HA P+ ++YTT++                  
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLIN----------------- 54

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEG 164
                      G C       K+GR+  A D   +MV   G + +  +YN L++  CK+ 
Sbjct: 55  -----------GLC-------KLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQD 96

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           +L+AA  ++ E  K+ F  D  T+  L+  L + G +  A      M + G+   L ++N
Sbjct: 97  RLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFN 156

Query: 225 CIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            I+  L +  ++  A+ VF  M  +D      TYS ++  LCK+ +L  A +LL   +  
Sbjct: 157 AIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 216

Query: 281 GVRILKSAQKAVVDGLRHSG 300
           G R    A   +V G   +G
Sbjct: 217 GCRPDLVAYTPLVLGFSAAG 236



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 3/188 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D  P   T++++++GLCK+   D A ++   +   G  P+LV Y  L+ G   AGR
Sbjct: 178 MIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGR 237

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A  +L+ +   G  P+ +TYT ++    +  +     EI   +     + +   Y  
Sbjct: 238 LDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSA 297

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + +  R+ E    M +M     + ++V+YNT+I       + E AY +  EM + G
Sbjct: 298 LIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECG 354

Query: 181 FECDKYTH 188
           F  D  T+
Sbjct: 355 FVPDARTY 362



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 59/105 (56%), Gaps = 6/105 (5%)

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDG 234
           M+ +G +C+  T +I++ GLC+ G +  A  H +   ++     ++ +Y  +++ L K G
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 235 KIDHAINVFESMEV-----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++D A ++F  M        ++FTY+++V  LCK  RL +A  ++
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVI 105


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 138/274 (50%), Gaps = 5/274 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   +++I+++G CK      A ++++ +     VP + TYN  + GL + GR+  A+
Sbjct: 153 VVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQ 212

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+  +G +P+ ITY+T++      RK+    E+  AM  +G   +   Y  ++   
Sbjct: 213 GVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGL 272

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +  EA +   +MV  G   D V+Y TL+  +C  GK+E A  + DEM  +G + D 
Sbjct: 273 CKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDV 332

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  L+ G  +AG    AR   + M       +  ++N ++D L K  ++D A+ VFE 
Sbjct: 333 VAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFER 392

Query: 246 ME-----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ME       D  TY+S++  LC  +RL  A K+ 
Sbjct: 393 MEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVF 426



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 135/268 (50%), Gaps = 5/268 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           ++N +LN LCK +    A  +F  +  +   VP++V+Y+ILI G CK   L  A  + K+
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQ 182

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D    PN  TY   +    R  +      +   M   G + D   Y T+I  F    +
Sbjct: 183 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARK 242

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             +A +  E M++ G + + V+YN L++  CKE K + A+ L  +M ++G + DK T+T 
Sbjct: 243 HDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTT 302

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKIDHAINVFESME 247
           L+ G C  G I+ A    + M   G D ++ AYNC++    R GK G+      V  S E
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE 362

Query: 248 VK-DSFTYSSMVHNLCKAKRLPSASKLL 274
            K D+ +++ M+  L KAKRL  A ++ 
Sbjct: 363 CKPDTVSHNIMIDGLSKAKRLDDAVEVF 390



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 1/248 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +  P   T+N  LNGL +     +A  ++  +   G  P+++TY+ LI G   A +
Sbjct: 183 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARK 242

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + + +   G  PNA+TY  ++    +  K     E+   M  +G   D   Y T
Sbjct: 243 HDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTT 302

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F  +G++++A +  ++MV+ G   D+V+YN L+  + + GK   A  L   M  + 
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE 362

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEAYNCIVDRLGKDGKIDHA 239
            + D  +H I+IDGL KA  +  A    E M +  G   +L  YN ++  L  + ++  A
Sbjct: 363 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEA 422

Query: 240 INVFESME 247
           + VF+ ++
Sbjct: 423 MKVFKEID 430



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 1/201 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+N +L+GLCK    D A  +FR + + G  P+ VTY  L+ G C  G+
Sbjct: 253 MISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGK 312

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+   GH P+ + Y  ++K  FR  K     ++   M  +    D   +  
Sbjct: 313 IEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNI 372

Query: 121 VIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I    K  RL +A +  E+M  D G   D+V+YN+LI   C E +L  A  +  E+++ 
Sbjct: 373 MIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRL 432

Query: 180 GFECDKYTHTILIDGLCKAGN 200
               D +   +L++ +  AG+
Sbjct: 433 KLSPDPHAFNVLLEAMYAAGH 453



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 1/235 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   T++ +++G    R  D A  +F  +   G  P  VTYN L+ GLCK  +
Sbjct: 218 MISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESK 277

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + +++ + G  P+ +TYTT++       K +  +E+   M  KG+  D   Y  
Sbjct: 278 PDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNC 337

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-Q 179
           ++  F + G+  EA    + MV+   + D VS+N +I+   K  +L+ A  + + ME+  
Sbjct: 338 LLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDH 397

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           G   D  T+  LI GLC    +  A    + ++++    +  A+N +++ +   G
Sbjct: 398 GCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAG 452



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 12/278 (4%)

Query: 46  VTYNILIKGLCKAGRLRTA----RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
           V +   + GLCK+G++  A    R + + L  S    +   ++ I + C   R     L 
Sbjct: 12  VAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGR-VDSALS 70

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM--VTDGVQLDIVSYNTLINL 159
           +L  M ++GY  D   +  +I    K  +++EA ++++ M            SYN+L+N 
Sbjct: 71  LLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNS 130

Query: 160 YCKEGKLEAAYLLLDEM-EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            CK  K+  A+ +   M  ++    D  +++ILIDG CK   +  A    + M  +    
Sbjct: 131 LCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVP 190

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           N+  YN  ++ L + G+I  A  V+E M       D  TYS+++H    A++   A +L 
Sbjct: 191 NVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELF 250

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            + +  G R        ++ GL       EA ++  K+
Sbjct: 251 EAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 288


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 158/312 (50%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    FN ++ G  ++   + A  +++ + + G+ P+ V+Y+ILI GL K G+
Sbjct: 36  MMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGK 95

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  +  IL E+   G  P+   Y+++++   + R+      +   M R G+  D   +  
Sbjct: 96  LDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYE 155

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G++K+A++  +QM   G Q ++  YN L++  C  G+LE A  L  EM+   
Sbjct: 156 LILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS 215

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  L+D +CKA  ++      E M   G+  N+  ++ ++  L + G+++ A+
Sbjct: 216 CSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKAL 275

Query: 241 NVFESM-EV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            VF SM E     + +TY++++  LC+A+++  A +L     ++ +     A  +++ G 
Sbjct: 276 EVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGY 335

Query: 297 RHSGCRREAKKI 308
              G   EA+K+
Sbjct: 336 CKRGSMDEAEKL 347



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 128/280 (45%), Gaps = 36/280 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +L+ +CK R  +   ++F  ++  G+VP ++T++ LI GLC+ G L  A  
Sbjct: 217 SPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALE 276

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   + ++G  PN  TYTT++    R  K     E+   M +     D   Y ++IA + 
Sbjct: 277 VFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYC 336

Query: 127 KIGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           K G + EA   Y E     G+Q  IV++NTLI+ +CK GKL  A  L+ EM  +G   D 
Sbjct: 337 KRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADS 396

Query: 186 YTHTILI-----------------------------------DGLCKAGNIKGARLHLEY 210
            T+ ILI                                    GLCK GNI  A    E 
Sbjct: 397 CTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEA 456

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
             K G   N E +  + + L K G+++ A  + E  + +D
Sbjct: 457 TRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARD 496



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 152/322 (47%), Gaps = 5/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP    ++ ++  L K R  D+A  +F  + + G  P+ + +  LI GLC+AG+
Sbjct: 106 MVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGK 165

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A    K++   G  PN   Y  ++     + + +    + + MK    + D   Y T
Sbjct: 166 VKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNT 225

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K  R++E     E M   G   ++++++TLI+  C+ G+LE A  +   M + G
Sbjct: 226 LLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAG 285

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +KYT+T LI GLC+A  +  AR   E M +     +  AYN ++    K G +D A 
Sbjct: 286 CKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAE 345

Query: 241 NVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            ++  M           T+++++   CK  +L  A++L+      G+       + ++ G
Sbjct: 346 KLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAG 405

Query: 296 LRHSGCRREAKKIQSKIRMAKI 317
           L  +    EA ++  ++R  K 
Sbjct: 406 LSRATKLDEALEVYKQMREKKF 427



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 153/312 (49%), Gaps = 9/312 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ ++  L K    + + ++   +   G  P++  +N +++G  ++  +  AR + + +
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +SG+ P+ ++Y  ++    +  K    L+ILS M  +G T     Y +++ A  K  R+
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A+   ++M+  G   D + +  LI   C+ GK++ A     +M K G + +   + +L
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           + GLC +G ++ A      M       ++  YN ++D + K  +++    +FE+M     
Sbjct: 192 LHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGY 251

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V +  T+S+++H LC+   L  A ++  S L++G +  K     ++ GL    CR E K 
Sbjct: 252 VPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL----CRAE-KV 306

Query: 308 IQSKIRMAKISH 319
           IQ++    K++ 
Sbjct: 307 IQARELFEKMTQ 318



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 39/248 (15%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRK----YKLGLEILSA----------------------- 105
           D   A N  TY++I+K   +  K    YK+  E+++A                       
Sbjct: 3   DKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNME 62

Query: 106 --------MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
                   M   GY  D   Y  +I    KIG+L E+   + +MV  G    + +Y++L+
Sbjct: 63  KAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLV 122

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
               K  +++ A  L DEM + G   D+     LI GLC+AG +K A    + M K G  
Sbjct: 123 RALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQ 182

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            N+  YN ++  L   G+++ A  +F  M+      D  TY++++  +CKA+R+    KL
Sbjct: 183 PNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKL 242

Query: 274 LLSCLKSG 281
             +   +G
Sbjct: 243 FEAMRAAG 250



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 104/212 (49%), Gaps = 4/212 (1%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M+ K    + F Y ++I + VK  + +E+   +E+M+  G   D+ ++N ++  + +   
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           +E A  +   M + G++ D  ++ ILI GL K G +  +   L  M   G   +++AY+ 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 226 IVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +V  L K  ++DHA ++F+ M       D   +  ++  LC+A ++  AS+      K G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            +        ++ GL  SG   +A  + ++++
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMK 212


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 45/333 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N ++N L +NR    A  +   + ++G  P +VTYN +IKG C  G  + A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   GH+ N +TY TI+K    +      L IL  M+  G   D + Y  +I  F K
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--------- 178
           I +++ A     +MV DG+  + V+Y  LI+ YCK+ KL+ A  LL+ M++         
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 179 --------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                                     +G   +  T+T +IDGLCK G+     L LE  N
Sbjct: 568 YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTS---LALEMFN 624

Query: 213 KI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
           K+   G   NL  Y+ ++  LG++GK++ A N+F  +E    + D  TY  M+     + 
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           ++  A   L   +K+G +        ++ GL++
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T    +  LC     ++A R+F  ++  G  P + TY  LI GLC +G 
Sbjct: 311 MILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGL 370

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +   +   G  PN +TY  ++     NR+ K    +L+ M R G + +   Y  
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +  +G  K+A   M  M+  G   ++V+YNT+I  YC  G   +A  +LD M   G
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 490

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D++++T LI G CK   ++ A      M   G   N   Y  ++D   KD K+D A 
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ E M+      +  TY+ ++H L K      A +L    ++ G+        A++DGL
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A ++ +K+
Sbjct: 611 CKNGSTSLALEMFNKM 626



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 151/322 (46%), Gaps = 20/322 (6%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P T T+  M+ G C+    D+AL++F  + K G  P  VTY+ LI GLC +GR+  A
Sbjct: 245 EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 304

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +++E+   G  P A T T  +        Y+    +   MK KG   + + Y  +I+ 
Sbjct: 305 FDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 364

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G LK A     +M  DGV  + V+YN LIN+  +  +++ A+++L+ M + G   +
Sbjct: 365 LCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  +I G C  G+ K A L +  M + G  +NL  YN I+      G    A+ + +
Sbjct: 425 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 484

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG----- 295
            M       D ++Y+ ++   CK  ++ SA  L    +  G+   +    A++DG     
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 544

Query: 296 -----------LRHSGCRREAK 306
                      ++ SGCR   +
Sbjct: 545 KLDTATSLLEHMKRSGCRPNVQ 566



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 4/254 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +L  L +   T   +  +  +   G  P L+ YN +I  LCK G +  A  I+K++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +S  +P+  TYT+++    R       L++ + M ++G   +   Y T+I      GR+ 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D + +M+  G+     +    I   C  G  E A+ L  +M+ +G E + YT+T LI
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 362

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            GLC +G +K A      M++ G   N   YN +++ L ++ +I +A  V   M      
Sbjct: 363 SGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCS 422

Query: 249 KDSFTYSSMVHNLC 262
            +  TY+ M+   C
Sbjct: 423 PNIVTYNEMIKGYC 436



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 11/284 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  +++G CK+   D A  +   +++ G  P + TYN+LI GL K   
Sbjct: 521 MVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNN 580

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K + + G  PN +TYT ++    +N    L LE+ + M  +G   +   Y +
Sbjct: 581 FSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSS 640

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  + G+++EA +   ++   G+  D ++Y  +I  Y   GK+E A+  L  M K G
Sbjct: 641 LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG 700

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHL--EYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            +   +T+ +LI GL     +   RL    + +    F       + +     K  ++D 
Sbjct: 701 CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 760

Query: 239 AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            ++V    +V++     ++V NL  A R   A++LL S +  G+
Sbjct: 761 GLSV----QVQN-----ALVSNLSTAGRWFEANELLGSMISQGL 795



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 9/306 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++  ++ G CK    ++A  +F  +   G  P  VTY  LI G CK  +L T
Sbjct: 489 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 548

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+ +  SG  PN  TY  ++    +   +    E+   M  +G   +   Y  +I 
Sbjct: 549 ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 608

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G    A +   +M+  G   ++++Y++LI    +EGK+E A  L  E+E+ G   
Sbjct: 609 GLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI-DHAINV 242
           D+ T+  +I+    +G ++ A   L  M K G    L  Y  ++  L  +  + D  +  
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 728

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
              +    SF Y +   +   A  + SA    L+ L  G+ +    Q A+V  L  +G  
Sbjct: 729 LPDVVPNCSFGYQTTDQD---AVSVMSAK---LAELDPGLSV--QVQNALVSNLSTAGRW 780

Query: 303 REAKKI 308
            EA ++
Sbjct: 781 FEANEL 786



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 59/308 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  M++GLCKN  T  AL MF  + + G +P L+TY+ LI+ L + G+
Sbjct: 591 MIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGK 650

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFD- 114
           +  A  +  EL   G  P+ ITY  +++    + K +     L  M + G     +T+  
Sbjct: 651 VEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGV 710

Query: 115 --------------------------GFGYCT---------------------------V 121
                                      FGY T                           +
Sbjct: 711 LIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNAL 770

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           ++     GR  EA + +  M++ G+  D  +YN+L+    +   ++ A  +   M  QG 
Sbjct: 771 VSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 830

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E     +  LI  LC+    K AR+  E M    ++ +      ++D L +DG  D  + 
Sbjct: 831 EVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCME 890

Query: 242 VFESMEVK 249
               ME +
Sbjct: 891 FLHIMETR 898



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 76/161 (47%)

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++K C         +  L  + + G     F Y  ++    ++G      D   +M+++G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           VQ +++ YN +IN  CK+G +  A  ++ ++ +     D +T+T +I G C+  ++  A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
                M K G + N   Y+ +++ L   G+++ A ++   M
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 4/305 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P  +T+NI+++ LC     + A ++   ++  G  P L++ NI++  LCKA +L  A
Sbjct: 380 DAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEA 439

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             I +   + G  PN++TY +++    +  K      +   M   G+  +   Y ++I  
Sbjct: 440 HRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRN 499

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   GR ++     ++M+  G + D+   NT ++   K G++E    + ++M+  GF  D
Sbjct: 500 FFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPD 559

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +++ILI GL KAG  +      + M++ GF  +  AYN +VD L K GK+D A  V E
Sbjct: 560 VRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLE 619

Query: 245 SMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+VK       TY S+V  L K  RL  A  L       G+ +      +++DG    G
Sbjct: 620 EMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVG 679

Query: 301 CRREA 305
              EA
Sbjct: 680 RIDEA 684



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 147/340 (43%), Gaps = 74/340 (21%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P   + NIM++ LCK    + A R+F    + G  P  VTY  LI GL K G+
Sbjct: 411 MELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGK 470

Query: 61  LRTARWILKELGDSGHAPNAITYT-----------------------------------T 85
           +  A  + +++ D+GH  N I YT                                   T
Sbjct: 471 IDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNT 530

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
            M C F+  + + G  I   MK  G+  D   Y  +I    K G+ +E ++  + M   G
Sbjct: 531 YMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQG 590

Query: 146 VQLDIVSYNTLINLYCKEGK-----------------------------------LEAAY 170
             LD  +YN +++  CK GK                                   L+ AY
Sbjct: 591 FALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAY 650

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
           +L +E + +G E +   ++ LIDG  K G I  A L LE M K G   N+  +N ++D L
Sbjct: 651 MLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDAL 710

Query: 231 GKDGKIDHAINVFESM-EVK---DSFTYSSMVHNLCKAKR 266
            K  +ID A+  F+SM E+K   +++TYS +++ LC+ ++
Sbjct: 711 VKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQK 750



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 155/317 (48%), Gaps = 5/317 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++I+++GL K         +F+ + + GF  +   YN ++ GLCK+G++  A  +
Sbjct: 558 PDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEV 617

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+      P   TY +I+    +  +      +    K KG   +   Y ++I  F K
Sbjct: 618 LEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGK 677

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+ EA   +E+M+  G+  ++ ++N+L++   K  +++ A +    M++     + YT
Sbjct: 678 VGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYT 737

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILI+GLC+      A +  + M K G   N+  Y  ++  L K G I  A ++FE  +
Sbjct: 738 YSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFK 797

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + DS ++++++  +  A R   A ++       G R+      +++D L  + C  
Sbjct: 798 TNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKTECLE 857

Query: 304 EAKKIQSKI-RMAKISH 319
           +A  + + +  +AK  H
Sbjct: 858 QAAIVGAVLSEIAKSQH 874



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 132/282 (46%), Gaps = 5/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N+ ++   K    D A + F  L+ HG  P+ V+Y  ++  LCKAGRL  A 
Sbjct: 242 LEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAE 301

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P A  Y T++       ++    ++L  ++ +G       + +++   
Sbjct: 302 ELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCL 361

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA    + M  D  + +I +YN +I++ C  G++  AY + DEME  G   + 
Sbjct: 362 GKKRKVDEALTLFDVMKKDA-KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNL 420

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  I++D LCKA  ++ A    E  ++ G + N   Y  ++D LGK GKID A  +FE 
Sbjct: 421 LSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEK 480

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M       +   Y+S++ N     R     K+    ++ G R
Sbjct: 481 MLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGR 522



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 137/309 (44%), Gaps = 5/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  + + +++  L + R  + AL + R +Q  G+   +  +  L++ L + G++  A  +
Sbjct: 174 PPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALAL 233

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+  S   P+ + Y   + C  +     +  +    +K  G   D   Y +++    K
Sbjct: 234 VDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCK 293

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL EA +   QM  +       +YNT+I  Y    + + AY LL+ + ++G      +
Sbjct: 294 AGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVS 353

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              ++  L K   +  A    + M K     N+  YN I+D L   G+++ A  + + ME
Sbjct: 354 FNSILTCLGKKRKVDEALTLFDVMKKDA-KPNISTYNIIIDMLCMAGRVNEAYKIRDEME 412

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +   F    + + MV  LCKA +L  A ++  S  + G         +++DGL   G   
Sbjct: 413 LAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKID 472

Query: 304 EAKKIQSKI 312
           +A ++  K+
Sbjct: 473 DAYRLFEKM 481



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 5/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F  ++  L +    + AL +   ++     P++V YN+ I    KAG +  A     EL 
Sbjct: 214 FTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELK 273

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P+ ++YT+++    +  +     E+   M+ +      + Y T+I  +    R  
Sbjct: 274 AHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFD 333

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A   +E++   G    +VS+N+++    K+ K++ A  L D M+K   + +  T+ I+I
Sbjct: 334 DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDA-KPNISTYNIII 392

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           D LC AG +  A    + M   G   NL + N +VDRL K  +++ A  +FES   +   
Sbjct: 393 DMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCN 452

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +S TY S++  L K  ++  A +L    L +G
Sbjct: 453 PNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAG 485



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 126/258 (48%), Gaps = 5/258 (1%)

Query: 20  LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           L ++R  ++A R+   ++   F P    Y +LI  L +A +   A  +L+++ D G+  +
Sbjct: 151 LVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVS 210

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
              +TT+++   R  + +  L ++  +K      D   Y   I  F K G +  A  +  
Sbjct: 211 VPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFH 270

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           ++   G++ D VSY +++ + CK G+L  A  L  +ME +      Y +  +I G   A 
Sbjct: 271 ELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAE 330

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYS 255
               A   LE + + G   ++ ++N I+  LGK  K+D A+ +F+ M+ KD+     TY+
Sbjct: 331 RFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMK-KDAKPNISTYN 389

Query: 256 SMVHNLCKAKRLPSASKL 273
            ++  LC A R+  A K+
Sbjct: 390 IIIDMLCMAGRVNEAYKI 407



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 126/272 (46%), Gaps = 11/272 (4%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           L+  L ++ RL  A  ++  +      P    YT ++      R+ +  LE+L  M+  G
Sbjct: 147 LVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVG 206

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           Y      + T++ A  + G+++ A   ++++    ++ DIV YN  I+ + K G ++ A+
Sbjct: 207 YEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAW 266

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE---AYNCIV 227
               E++  G   D  ++T ++  LCKAG +  A    E   ++  + ++    AYN ++
Sbjct: 267 KFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAE---ELFGQMEAERDVPCAYAYNTMI 323

Query: 228 DRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              G   + D A  + E +     +    +++S++  L K +++  A   L   +K   +
Sbjct: 324 MGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALT-LFDVMKKDAK 382

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
              S    ++D L  +G   EA KI+ ++ +A
Sbjct: 383 PNISTYNIIIDMLCMAGRVNEAYKIRDEMELA 414



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+   G+         ++    R+R+ +    ++ AM+   +      Y  +I A  
Sbjct: 128 VLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALA 187

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  + + A + + QM   G ++ +  + TL+    +EG++E A  L+DE++    E D  
Sbjct: 188 EARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIV 247

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + + ID   KAG++  A      +   G   +  +Y  +V  L K G++  A  +F  M
Sbjct: 248 LYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQM 307

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           E    V  ++ Y++M+     A+R   A KLL
Sbjct: 308 EAERDVPCAYAYNTMIMGYGSAERFDDAYKLL 339



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 35/192 (18%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   T+N +++ L K    D AL  F+ +++    P   TY+ILI GLC+  +   A 
Sbjct: 696 LTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAF 755

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+   G  PN +TYTT+                                   I+  
Sbjct: 756 VFWQEMQKQGLIPNVVTYTTM-----------------------------------ISGL 780

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G + +A    E+  T+G   D  S+N LI       +   AY + +E   +G   + 
Sbjct: 781 AKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNV 840

Query: 186 YTHTILIDGLCK 197
            T   L+D L K
Sbjct: 841 KTCISLLDALNK 852


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 39/305 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNI+++  C+N   D  + +   + + G +P+++TY  +I G CK G +  A  +LK +
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN I+YT ++K                            G C+         R 
Sbjct: 429 TACGCKPNTISYTIVLK----------------------------GLCSA-------ERW 453

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D M QM+  G  L+ +++NTLIN  CK+G +E A  LL +M   G   D  +++ +
Sbjct: 454 VDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTV 513

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGL KAG    A   L  M   G   N   Y+ I   L ++G+I+  I +F++++    
Sbjct: 514 IDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTI 573

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+  Y++++ +LCK      A + L   + SG    +S    ++ GL   G  +EA++
Sbjct: 574 RSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQE 633

Query: 308 IQSKI 312
           + +++
Sbjct: 634 MLTEL 638



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 137/272 (50%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFN +++ LC+N   +    +   + +HG  P++  Y  +I G+CK G L  A  
Sbjct: 259 PPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHE 318

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL  +   G  PN + Y T++K      +++   E+L+ M  K    D   +  ++  F 
Sbjct: 319 ILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFC 378

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G +    + +EQM+  G   D+++Y T+IN +CKEG ++ A +LL  M   G + +  
Sbjct: 379 QNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTI 438

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++TI++ GLC A     A   +  M + G   N   +N +++ L K G ++ AI + + M
Sbjct: 439 SYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM 498

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            V     D  +YS+++  L KA +   A +LL
Sbjct: 499 LVNGCSPDLISYSTVIDGLGKAGKTDEALELL 530



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 138/272 (50%), Gaps = 4/272 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N++LN +C     D AL + R L   G  P++V+YN ++KGLC A R    + +++E+  
Sbjct: 196 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
               PN +T+ T++    RN  ++   E+L+ M   G T D   Y T+I    K G L+ 
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEV 315

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A + + +M + G++ ++V YNTL+   C   + E    LL EM  +    D  T  IL+D
Sbjct: 316 AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVD 375

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----K 249
             C+ G +      LE M + G   ++  Y  +++   K+G ID A+ + +SM       
Sbjct: 376 FFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 435

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++ +Y+ ++  LC A+R   A  L+   ++ G
Sbjct: 436 NTISYTIVLKGLCSAERWVDAEDLMSQMIQQG 467



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 112/252 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NG CK    D A+ + + +   G  P  ++Y I++KGLC A R   A  +
Sbjct: 400 PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDL 459

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G   N IT+ T++    +    +  +E+L  M   G + D   Y TVI    K
Sbjct: 460 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 519

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  EA + +  MV  G+  + + Y+++ +   +EG++     + D ++      D   
Sbjct: 520 AGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVL 579

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I  LCK G  + A   L YM   G   N   Y  ++  L  +G +  A  +   + 
Sbjct: 580 YNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELC 639

Query: 248 VKDSFTYSSMVH 259
            K +     M H
Sbjct: 640 SKGALRKHLMKH 651



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 146/350 (41%), Gaps = 47/350 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++  LC      +AL +   + + G  P    Y+++++  C+ G  R+A 
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAV 177

Query: 66  WILKELGDSGHA-----------------------------------PNAITYTTIMKCC 90
            +L++L   G A                                   P+ ++Y  ++K  
Sbjct: 178 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGL 237

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
              +++    E++  M R     +   + T+I+   + G  +   + + QMV  G   DI
Sbjct: 238 CMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDI 297

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
             Y T+I+  CKEG LE A+ +L+ M   G + +   +  L+ GLC A   +     L  
Sbjct: 298 RMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAE 357

Query: 211 MNKIGFDSNLE----AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
           M    FD +       +N +VD   ++G +D  I + E M     + D  TY+++++  C
Sbjct: 358 M----FDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFC 413

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           K   +  A  LL S    G +    +   V+ GL  +    +A+ + S++
Sbjct: 414 KEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 463



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 9/267 (3%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N M+ G C+    ++A R+   +      P   TY  +++ LC  GR+  A  +L E+ 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT-VIAAFVKIGRL 131
             G AP    Y  I++   R   ++  + +L  +  +G   D  G C  V+ A    G +
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALD-VGNCNLVLNAICDQGSV 208

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA   +  + + G + D+VSYN ++   C   +      L++EM +     +  T   L
Sbjct: 209 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           I  LC+ G  +     L  M + G   ++  Y  I+D + K+G ++ A  +   M     
Sbjct: 269 ISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGL 328

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLL 274
             +   Y++++  LC A+R     +LL
Sbjct: 329 KPNVVCYNTLLKGLCSAERWEETEELL 355



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 64/145 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   +++ +++GL K   TD AL +   +   G  P  + Y+ +   L + GR
Sbjct: 498 MLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGR 557

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +   + D+    +A+ Y  ++    +  + +  +E L+ M   G   +   Y  
Sbjct: 558 INKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTI 617

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDG 145
           +I      G +KEA + + ++ + G
Sbjct: 618 LIRGLASEGFVKEAQEMLTELCSKG 642


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           IM+ GLCK    +   ++       G +P ++ YN LI G CK G +  A  +  EL   
Sbjct: 190 IMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLK 249

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P   TY  I+    +   +K    +L  M  +G T +   Y T+I A  K G + +A
Sbjct: 250 GFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKA 309

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
            + +E M+  G + DIV+YNTLI+  C++GK+  A  LL++   +G   +K+++T LI  
Sbjct: 310 VETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHA 369

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKD 250
            CK G    A   L  M + G   +L  Y  +V  L   G++D A+ + E M       D
Sbjct: 370 YCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPD 429

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +  Y+ ++  LCK  +LP+A  LL   L   V         +VDG   +G   EA+K+
Sbjct: 430 AGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKL 487



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT     +N +++   K+ +   A+    G+ + G  P++VTYN LI G C+ G++  A 
Sbjct: 286 LTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEAD 345

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L++    G  PN  +YT ++    +   Y      L  M  +G+  D   Y  ++   
Sbjct: 346 QLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGL 405

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           V  G +  A    E+M+  GV  D   YN L++  CK+ KL AA LLL EM  Q    D 
Sbjct: 406 VVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDA 465

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + +  L+DG  + GN+  AR   E   + G +  +  YN ++    K G +  A+     
Sbjct: 466 FVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINR 525

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           M+      D FTYS+++    K   L  A K+    +K         +  V+DGL+
Sbjct: 526 MKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVK------MKCKPNVMDGLQ 575



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G CK    + A  +F  L+  GF+P + TY  +I G CK G  +    +
Sbjct: 218 PNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRL 277

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G   N   Y TI+   +++      +E +  M   G   D   Y T+I+   +
Sbjct: 278 LMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCR 337

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ EA   +EQ +  G+  +  SY  LI+ YCK+G  + A   L EM ++G + D  T
Sbjct: 338 DGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVT 397

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVF 243
           +  L+ GL  AG +  A    E M + G   +   YN ++  L K  K+  A      + 
Sbjct: 398 YGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEML 457

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +   + D+F Y+++V    +   L  A KL    ++ G+        A++ G    G  +
Sbjct: 458 DQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMK 517

Query: 304 EA 305
           +A
Sbjct: 518 DA 519



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 8/189 (4%)

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           C ++    K G+L+E    +E     G   +I+ YNTLI+ YCK+G +E A  L  E++ 
Sbjct: 189 CIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKL 248

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +GF     T+  +I+G CK G+ K     L  MN  G   N++ YN I+D   K G I  
Sbjct: 249 KGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVK 308

Query: 239 AINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A+   E M       D  TY++++   C+  ++  A +LL   L  G+   K +   ++ 
Sbjct: 309 AVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLI- 367

Query: 295 GLRHSGCRR 303
              H+ C++
Sbjct: 368 ---HAYCKQ 373



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 22/192 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +  +++G  +N   D A ++F    + G  P +V YN +IKG CK G 
Sbjct: 456 MLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGM 515

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY----KLGLEILSAMKRKGYTFDGF 116
           ++ A   +  +     AP+  TY+T++    +        K+  E++  MK K    DG 
Sbjct: 516 MKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVK-MKCKPNVMDGL 574

Query: 117 -GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            G   +I +      ++ +            +L  ++Y+++++ Y  +G  EA+ +L   
Sbjct: 575 QGLLLIIPSLFAFANMECS------------ELHCINYSSILDQYLPQGTSEASVILQTM 622

Query: 176 MEKQGFECDKYT 187
            E    EC  ++
Sbjct: 623 FE----ECQSHS 630


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 135/270 (50%), Gaps = 4/270 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ATFN+++NGLCK        ++   +   G VP  VTYN LI GLC  G+L  A  +
Sbjct: 249 PSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSL 308

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  S   PN +TY TI+    +  +   G  +L  M+ +GY  + + Y  +++   K
Sbjct: 309 LDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFK 368

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +EA    ++ +  G +L+ V Y+ L++  C++ K + A  +L EM  +G   + +T
Sbjct: 369 EGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFT 428

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + L+ G  + GN   A    + M KI    N   Y+ ++  L KDGK+  A+ V+  M 
Sbjct: 429 FSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKML 488

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKL 273
                 D   YSSM+  LC A  +  A KL
Sbjct: 489 ATGCRPDVVAYSSMIQGLCDAGSVEEALKL 518



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 41/348 (11%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   +FN+++  +CK    DNA+ +FR +     VP+  TY  L+ GLCK  R+  A
Sbjct: 176 NILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEA 235

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+   G  P+  T+  ++    +   +    +++  M  KG   +   Y T+I  
Sbjct: 236 VSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHG 295

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G+L +A   +++MV+     + V+Y T+IN   K+G+      +L  ME++G+  +
Sbjct: 296 LCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVN 355

Query: 185 KYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +Y +++L+ GL K G  + A RL  E M+K G   N   Y+ +VD L +D K D A+ + 
Sbjct: 356 EYVYSVLVSGLFKEGKSEEAMRLFKESMDK-GCKLNTVLYSALVDGLCRDRKPDEAMKIL 414

Query: 244 ESMEVK----DSFTYSS-----------------------------------MVHNLCKA 264
             M  K    ++FT+SS                                   ++H LCK 
Sbjct: 415 SEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKD 474

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            ++  A  +    L +G R    A  +++ GL  +G   EA K+ +++
Sbjct: 475 GKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEM 522



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 140/275 (50%), Gaps = 9/275 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFR---GLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           P   +FN +LN + +  + D AL  +    G +    +P ++++N++IK +CK G +  A
Sbjct: 141 PTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNA 200

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + +E+      P+A TY T+M    +  +    + +L  M+ +G       +  +I  
Sbjct: 201 IELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLING 260

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G     T  ++ M   G   + V+YNTLI+  C +GKL+ A  LLD M       +
Sbjct: 261 LCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPN 320

Query: 185 KYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + T+  +I+GL K G  + GAR+ L  M + G+  N   Y+ +V  L K+GK + A+ +F
Sbjct: 321 EVTYGTIINGLVKQGRALDGARV-LVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLF 379

Query: 244 -ESMEVK---DSFTYSSMVHNLCKAKRLPSASKLL 274
            ESM+     ++  YS++V  LC+ ++   A K+L
Sbjct: 380 KESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKIL 414



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 2/248 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGL K     +  R+   +++ G++     Y++L+ GL K G+
Sbjct: 312 MVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGK 371

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + KE  D G   N + Y+ ++    R+RK    ++ILS M  KG   + F + +
Sbjct: 372 SEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSS 431

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F ++G   +A +  + M       + V Y+ LI+  CK+GK+  A ++  +M   G
Sbjct: 432 LMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATG 491

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA--YNCIVDRLGKDGKIDH 238
              D   ++ +I GLC AG+++ A      M  +  DS  +   YN + + L K   I  
Sbjct: 492 CRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISR 551

Query: 239 AINVFESM 246
           A+++  SM
Sbjct: 552 AVDLLNSM 559



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 27/283 (9%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            ++++++GL K   ++ A+R+F+     G     V Y+ L+ GLC+  +   A  IL E+
Sbjct: 358 VYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEM 417

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G APNA T++++MK  F        +E+   M +     +   Y  +I    K G++
Sbjct: 418 TDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKV 477

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME--KQGFECDKYTHT 189
            EA     +M+  G + D+V+Y+++I   C  G +E A  L +EM   +   + D  T+ 
Sbjct: 478 MEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYN 537

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC---------------------IVD 228
           IL + LCK  +I  A   L  M   G D +L   N                      +V 
Sbjct: 538 ILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREKLDPPQDGAKFLDELVV 597

Query: 229 RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
           RL K  +   A  + E M  K     + T++ +VH LC+ K++
Sbjct: 598 RLLKRQRNLGASKIVEVMLQKFLSPKASTWARVVHELCQPKKI 640



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQ--KHGFVPELVTYNILIKGLCKAGRLRTAR 65
           P    ++ M+ GLC     + AL+++  +   +    P+++TYNIL   LCK   +  A 
Sbjct: 494 PDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAV 553

Query: 66  WILKELGDSGHAPNAITYTTIMK 88
            +L  + D G  P+ +T    ++
Sbjct: 554 DLLNSMLDRGCDPDLVTCNIFLR 576



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1   MIC--GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 55
           M+C   D  P   T+NI+ N LCK      A+ +   +   G  P+LVT NI ++ L
Sbjct: 522 MLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRML 578


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 45/333 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N ++N L +NR    A  +   + ++G  P +VTYN +IKG C  G  + A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   GH+ N +TY TI+K    +      L IL  M+  G   D + Y  +I  F K
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--------- 178
           I +++ A     +MV DG+  + V+Y  LI+ YCK+ KL+ A  LL+ M++         
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 179 --------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                                     +G   +  T+T +IDGLCK G+     L LE  N
Sbjct: 568 YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTS---LALEMFN 624

Query: 213 KI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
           K+   G   NL  Y+ ++  LG++GK++ A N+F  +E    + D  TY  M+     + 
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           ++  A   L   +K+G +        ++ GL++
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T    +  LC     ++A R+F  ++  G  P + TY  LI GLC +G 
Sbjct: 311 MILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGI 370

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +   +   G  PN +TY  ++     NR+ K    +L+ M R G + +   Y  
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +  +G  K+A   M  M+  G   ++V+YNT+I  YC  G   +A  +LD M   G
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 490

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D++++T LI G CK   ++ A      M   G   N   Y  ++D   KD K+D A 
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ E M+      +  TY+ ++H L K      A +L    ++ G+        A++DGL
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A ++ +K+
Sbjct: 611 CKNGSTSLALEMFNKM 626



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 151/322 (46%), Gaps = 20/322 (6%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P T T+  M+ G C+    D+AL++F  + K G  P  VTY+ LI GLC +GR+  A
Sbjct: 245 EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 304

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +++E+   G  P A T T  +        Y+    +   MK KG   + + Y  +I+ 
Sbjct: 305 FDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 364

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G LK A     +M  DGV  + V+YN LIN+  +  +++ A+++L+ M + G   +
Sbjct: 365 LCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  +I G C  G+ K A L +  M + G  +NL  YN I+      G    A+ + +
Sbjct: 425 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 484

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG----- 295
            M       D ++Y+ ++   CK  ++ SA  L    +  G+   +    A++DG     
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 544

Query: 296 -----------LRHSGCRREAK 306
                      ++ SGCR   +
Sbjct: 545 KLDTATSLLEHMKRSGCRPNVQ 566



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 4/254 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +L  L +   T   +  +  +   G  P L+ YN +I  LCK G +  A  I+K++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +S  +P+  TYT+++    R       L++ + M ++G   +   Y T+I      GR+ 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D + +M+  G+     +    I   C  G  E A+ L  +M+ +G E + YT+T LI
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 362

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            GLC +G +K A      M++ G   N   YN +++ L ++ +I +A  V   M      
Sbjct: 363 SGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCS 422

Query: 249 KDSFTYSSMVHNLC 262
            +  TY+ M+   C
Sbjct: 423 PNIVTYNEMIKGYC 436



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 11/284 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  +++G CK+   D A  +   +++ G  P + TYN+LI GL K   
Sbjct: 521 MVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNN 580

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K + + G  PN +TYT ++    +N    L LE+ + M  +G   +   Y +
Sbjct: 581 FSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSS 640

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  + G+++EA +   ++   G+  D ++Y  +I  Y   GK+E A+  L  M K G
Sbjct: 641 LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG 700

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHL--EYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            +   +T+ +LI GL     +   RL    + +    F       + +     K  ++D 
Sbjct: 701 CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 760

Query: 239 AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            ++V    +V++     ++V NL  A R   A++LL S +  G+
Sbjct: 761 GLSV----QVQN-----ALVSNLSTAGRWFEANELLGSMISQGL 795



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 9/306 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++  ++ G CK    ++A  +F  +   G  P  VTY  LI G CK  +L T
Sbjct: 489 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 548

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+ +  SG  PN  TY  ++    +   +    E+   M  +G   +   Y  +I 
Sbjct: 549 ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 608

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G    A +   +M+  G   ++++Y++LI    +EGK+E A  L  E+E+ G   
Sbjct: 609 GLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI-DHAINV 242
           D+ T+  +I+    +G ++ A   L  M K G    L  Y  ++  L  +  + D  +  
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 728

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
              +    SF Y +   +   A  + SA    L+ L  G+ +    Q A+V  L  +G  
Sbjct: 729 LPDVVPNCSFGYQTTDQD---AVSVMSAK---LAELDPGLSV--QVQNALVSNLSTAGRW 780

Query: 303 REAKKI 308
            EA ++
Sbjct: 781 FEANEL 786



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 59/308 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  M++GLCKN  T  AL MF  + + G +P L+TY+ LI+ L + G+
Sbjct: 591 MIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGK 650

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFD- 114
           +  A  +  EL   G  P+ ITY  +++    + K +     L  M + G     +T+  
Sbjct: 651 VEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGV 710

Query: 115 --------------------------GFGYCT---------------------------V 121
                                      FGY T                           +
Sbjct: 711 LIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNAL 770

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           ++     GR  EA + +  M++ G+  D  +YN+L+    +   ++ A  +   M  QG 
Sbjct: 771 VSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 830

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E     +  LI  LC+    K AR+  E M    ++ +      ++D L +DG  D  + 
Sbjct: 831 EVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCME 890

Query: 242 VFESMEVK 249
               ME +
Sbjct: 891 FLHIMETR 898



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 76/161 (47%)

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++K C         +  L  + + G     F Y  ++    ++G      D   +M+++G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           VQ +++ YN +IN  CK+G +  A  ++ ++ +     D +T+T +I G C+  ++  A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
                M K G + N   Y+ +++ L   G+++ A ++   M
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 150/316 (47%), Gaps = 41/316 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  ++  LC  R T  A+ + R +Q  G  P++VTY  LI+GLC A  +  A  +
Sbjct: 111 PTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVEL 170

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+ +SG  PN + Y+ +++   +  +++   ++   M  +G   D   Y  +I +  +
Sbjct: 171 LREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCR 230

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++K+AT  M++M+  G++ ++V+YN LIN  CKEG ++ A  L + M ++G   D  T
Sbjct: 231 EGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVT 290

Query: 188 HTILID-------------------------------------GLCKAGNIKGARLHLEY 210
           +  LI                                      GLCK G ++ A    + 
Sbjct: 291 YNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDM 350

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M + G   NL  +N ++  L +  K+  A+ + + M       DSFTYS +++  CK  +
Sbjct: 351 MAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQ 410

Query: 267 LPSASKLLLSCLKSGV 282
           +  A  LL    + G+
Sbjct: 411 VDRAESLLSKMRRDGI 426



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 141/317 (44%), Gaps = 40/317 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +L G CK    +   ++F  +   G  P++V Y  LI  LC+ G+++ A 
Sbjct: 179 IEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKAT 238

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ ++ + G  PN +TY  ++    +    K  + + + M  KG   D   Y T+I   
Sbjct: 239 QVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGL 298

Query: 126 VKIGRLKEATDYMEQMV--TDGVQLDIVSYNTLINLYCKEGKLEAAYL------------ 171
             +  + EA   +E+M+     V+ ++V++N++I+  CK G++  A+             
Sbjct: 299 SGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCAC 358

Query: 172 -----------------------LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
                                  L+DEM   G E D +T++ILI+G CK   +  A   L
Sbjct: 359 NLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLL 418

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAK 265
             M + G +  L  Y  ++  L + G ++ A N F+ M      D   YS+M+H  C+ +
Sbjct: 419 SKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLR 478

Query: 266 RLPSASKLLLSCLKSGV 282
              SA + L   L  G+
Sbjct: 479 DRKSAEEFLKHMLDEGL 495



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 135/266 (50%), Gaps = 8/266 (3%)

Query: 12  TFNIMLNGLCKNRY-TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           ++N +L  LC+     D AL + R +  H   P  V+Y  L++ LC   R   A  +L++
Sbjct: 80  SYNTVLAALCRQGGCLDAALFLLR-VMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRD 138

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  SG  P+ +TY T+++           +E+L  M   G   +   Y  ++  + K GR
Sbjct: 139 MQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGR 198

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            +  +   E+M   G++ D+V Y  LI+  C+EGK++ A  ++D+M ++G E +  T+ +
Sbjct: 199 WECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNV 258

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF------E 244
           LI+ +CK G++K A      M + G   +   YN ++  L    ++D A+ +       E
Sbjct: 259 LINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGE 318

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSA 270
           +M   +  T++S++H LCK  R+  A
Sbjct: 319 TMVEPNVVTFNSVIHGLCKTGRMRQA 344



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 137/275 (49%), Gaps = 8/275 (2%)

Query: 42  VPELVTYNILIKGLCKAGR-LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 100
           V + V+YN ++  LC+ G  L  A ++L+ +      P A++YTT+M+     R+    +
Sbjct: 75  VRDAVSYNTVLAALCRQGGCLDAALFLLRVMAHETR-PTAVSYTTLMRALCAERRTGQAV 133

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
            +L  M+  G   D   Y T+I        + +A + + +M   G++ ++V Y+ L+  Y
Sbjct: 134 GLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGY 193

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           CK G+ E    + +EM  +G E D   +T LID LC+ G +K A   ++ M + G + N+
Sbjct: 194 CKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNV 253

Query: 221 EAYNCIVDRLGKDGKIDHAI----NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
             YN +++ + K+G +  A+    N+ E     D+ TY++++  L     +  A  LL  
Sbjct: 254 VTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEE 313

Query: 277 CLKSGVRILKSAQ--KAVVDGLRHSGCRREAKKIQ 309
            +     +  +     +V+ GL  +G  R+A +++
Sbjct: 314 MIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVR 348



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 138/270 (51%), Gaps = 11/270 (4%)

Query: 1   MICGD--LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           MI G+  + P   TFN +++GLCK      A ++   + ++G    LVT+N+LI GL + 
Sbjct: 314 MIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRV 373

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
            +++ A  ++ E+  SG  P++ TY+ ++    +  +      +LS M+R G   +   Y
Sbjct: 374 HKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHY 433

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             ++AA  + G +++A ++ ++M  +  +LD+V+Y+T+I+  C+    ++A   L  M  
Sbjct: 434 IPLLAALCEQGMMEQARNFFDEMHKN-CKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLD 492

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D  T+++LI+    +G++  A   L+ M   GF  ++  ++ ++   G  G  + 
Sbjct: 493 EGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEK 552

Query: 239 AINVFESMEVKD--------SFTYSSMVHN 260
            + +   M  KD        S  Y+ +V N
Sbjct: 553 VLELIREMTAKDIALDSKIISTIYTCLVAN 582



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 9/254 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHG---FVPELVTYNILIKGLCKAGRLRTARWIL 68
           T+N ++ GL      D A+ +   +  HG     P +VT+N +I GLCK GR+R A  + 
Sbjct: 290 TYNTLITGLSGVLEMDEAMGLLEEM-IHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVR 348

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
             + ++G A N +T+  ++    R  K K  +E++  M   G   D F Y  +I  F K+
Sbjct: 349 DMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKM 408

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
            ++  A   + +M  DG++ ++V Y  L+   C++G +E A    DEM K   + D   +
Sbjct: 409 WQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKN-CKLDVVAY 467

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           + +I G C+  + K A   L++M   G   +   Y+ +++     G +  A  V + M  
Sbjct: 468 STMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTA 527

Query: 248 ---VKDSFTYSSMV 258
              V D   + S++
Sbjct: 528 SGFVPDVAVFDSLI 541



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 46/96 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P + T+++++N    +     A R+ + +   GFVP++  ++ LIKG    G      
Sbjct: 495 LIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVL 554

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
            +++E+     A ++   +TI  C   N + K  L+
Sbjct: 555 ELIREMTAKDIALDSKIISTIYTCLVANNEGKALLQ 590


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 159/345 (46%), Gaps = 45/345 (13%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           CT TFNIML  LC       AL + R + +    P  VTYN +I G C  GR++ A  I+
Sbjct: 113 CTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIM 168

Query: 69  KELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFV 126
           +E+ + G  APN  TY T++    +  +    +++   M  KG    +   Y  +I  + 
Sbjct: 169 REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC 228

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G+L  A  Y ++MV  GV + + +YN L++    +G+   AY L++EM  +G   D +
Sbjct: 229 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 288

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIG---------------------------FD-- 217
           T+ ILI+G CK GN+K A    E M++ G                           FD  
Sbjct: 289 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 348

Query: 218 ------SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
                  +L  YN +++     G ID A  +   ME K    D  TY++++  LC   R+
Sbjct: 349 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 408

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             A KL+    + G++        ++ G    G  ++A +I++++
Sbjct: 409 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM 453



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 4/297 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P    +N ++ G C     D AL     + + G    + TYN+L+  L   GR   
Sbjct: 211 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 270

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +++E+G  G AP+  TY  ++    +    K  LEI   M R+G       Y  +I 
Sbjct: 271 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 330

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  K G+++E     ++ V  G++ D+V YN LIN +   G ++ A+ ++ EMEK+    
Sbjct: 331 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 390

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  L+ GLC  G +  AR  ++ M + G   +L  YN ++      G +  A+ + 
Sbjct: 391 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIR 450

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             M  K       TY++++  LCK  +   A  ++   +++G+    S   ++++GL
Sbjct: 451 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 507



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 145/280 (51%), Gaps = 12/280 (4%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILS 104
            T+NI+++ LC AG+   A  +L+++      PNA+TY T++   C R R  +  L+I+ 
Sbjct: 115 TTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGR-VQAALDIMR 169

Query: 105 AMK-RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCK 162
            M+ R G   + + Y TVI+ + K+GR+ EA    ++M+T G V+ + V YN LI  YC 
Sbjct: 170 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           +GKL+ A L  D M ++G      T+ +L+  L   G    A   +E M   G   ++  
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 289

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN +++   K+G +  A+ +FE+M  +       TY+++++ L K  ++    KL    +
Sbjct: 290 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 349

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           + G+R       A+++    SG    A +I  ++   +I+
Sbjct: 350 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 389


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 143/281 (50%), Gaps = 6/281 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++ +++ GLC +R TD A+ + R +Q  G   ++VTY  LI+GLC A  L  A  +
Sbjct: 113 PNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALEL 172

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+  SG  PN I Y+ +++   R+ +++   ++   M R G   D   +   I    K
Sbjct: 173 LGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCK 232

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ +A    + MV  G++ ++V+YN LIN  CKEG +  A  L +EM+ +G   D  T
Sbjct: 233 KGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVT 292

Query: 188 HTILIDGLCKAGNIKGARLHLEYM--NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +  LI GL     + GA   LE M       + ++  +N ++  L K G++  AI+V E 
Sbjct: 293 YNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREM 352

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M  +    +  TY+ ++    +  ++  A  L+   + SG+
Sbjct: 353 MAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGL 393



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 143/283 (50%), Gaps = 7/283 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    F   ++ LCK      A+++   + + G  P +VTYN+LI  LCK G +R A 
Sbjct: 216 VEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREAL 275

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF---DGFGYCTVI 122
            +  E+ D G AP+ +TY T++       +    + +L  M  +G T    D   + +VI
Sbjct: 276 ALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMI-QGDTLVEPDVVTFNSVI 334

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               KIGR+++A    E M   G   ++V+YN LI  + +  K+  A  L+ E+   G E
Sbjct: 335 HGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLE 394

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D +T++ILI+G  K   +  A + L  M + G  + L  Y  ++  L + G ++ A+ +
Sbjct: 395 PDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVL 454

Query: 243 FESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           F  M++    D+  YS+M++  CK+  + +A +LL   L  G+
Sbjct: 455 FNEMDMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGL 497



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 139/278 (50%), Gaps = 6/278 (2%)

Query: 1   MICGD--LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           MI GD  + P   TFN +++GLCK      A+ +   + + G +  LVTYN LI G  + 
Sbjct: 316 MIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRV 375

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
            ++  A  ++ EL  SG  P++ TY+ ++    +  +       L  M ++G   + F Y
Sbjct: 376 HKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHY 435

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             ++AA  ++G +++A     +M  +   LD V+Y+T++   CK G ++AA  LL +M  
Sbjct: 436 IPLLAALCQLGMMEQAMVLFNEMDMN-CGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLD 494

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D  T++ILI+   K G+++ A   L+ M   GF  ++  ++ ++     +G+I+ 
Sbjct: 495 EGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINK 554

Query: 239 AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
            +++   M  K+       +   C   RLP    LL S
Sbjct: 555 ILDLIHEMRAKNVAIDPKFI---CTLVRLPQQMPLLWS 589



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 8/241 (3%)

Query: 42  VPELVTYNILIKGLC-KAGRLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRKYK 97
           V + V+YNI++  LC + G LR A  +L ++    H    PNA++YT +M+    +R+  
Sbjct: 73  VRDAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTD 132

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             + +L +M+  G   D   Y T+I        L  A + + +M   GV  +++ Y+ L+
Sbjct: 133 EAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLL 192

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
             YC+ G+ +    + +EM + G E D    T  ID LCK G I  A    + M + G +
Sbjct: 193 RGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLE 252

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
            N+  YN +++ L K+G +  A+ +   M+ K    D  TY++++  L     +  A  L
Sbjct: 253 PNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGL 312

Query: 274 L 274
           L
Sbjct: 313 L 313


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 145/310 (46%), Gaps = 15/310 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++N   K      A  ++  +   G +P  +TY+ +I G CK  RL  A 
Sbjct: 287 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAE 346

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G +P+ IT+ T++    R ++   G+++L  M   G   +   Y T+I  F
Sbjct: 347 HMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGF 406

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
            ++G L  A D +++MV+ GV  ++V+ NTL++  C  GKL+ A  +   M+K       
Sbjct: 407 CQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDA 466

Query: 179 ----QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                G E D  T+ ILI GL   G    A    E M   G   +   YN ++  L K  
Sbjct: 467 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQS 526

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           ++D A  +F+SM  K    +  T++++++  CKA R+    +L     + G+        
Sbjct: 527 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 586

Query: 291 AVVDGLRHSG 300
            ++ G R  G
Sbjct: 587 TLIHGFRKVG 596



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 136/277 (49%), Gaps = 16/277 (5%)

Query: 16  MLNGLCKN-RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           M+NG C + R+++    +   L++    P++VTYN LI    K G+   A  +  E+   
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P+ ITY++++    +  +      +   M  KG + D   + T+IA + +  R+ + 
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDG 380

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              + +M   G+  + ++Y TLI+ +C+ G L AA  LL EM   G   +  T   L+DG
Sbjct: 381 IKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDG 440

Query: 195 LCKAGNIKGARLHLEYMNKI-----------GFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           LC  G +K A    + M K            G + +++ YN ++  L  +GK   A  ++
Sbjct: 441 LCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 500

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
           E M     V D+ TY+S++H LCK  RL  A+++  S
Sbjct: 501 EEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDS 537



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 142/316 (44%), Gaps = 36/316 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++NGLC+      A+ +   + + G  P  +TY  ++ G+CK G   +A  +
Sbjct: 177 PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNL 236

Query: 68  LKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L+++ +  H  PN + +    + C  N                       G+C+      
Sbjct: 237 LRKMEEVSHIKPNVVIWPLERRTCMIN-----------------------GFCSS----- 268

Query: 127 KIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             GR  EA   +++M+    +  D+V+YN LIN + KEGK   A  L DEM  +G     
Sbjct: 269 --GRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPST 326

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ +IDG CK   +  A      M   G   ++  +N ++    +  ++D  I +   
Sbjct: 327 ITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHE 386

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V ++ TY++++H  C+   L +A  LL   + SGV         ++DGL  +G 
Sbjct: 387 MTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGK 446

Query: 302 RREAKKIQSKIRMAKI 317
            ++A ++   ++ +K+
Sbjct: 447 LKDALEMFKAMQKSKM 462



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 1/180 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI+++GL        A  ++  +   G VP+ +TYN +I GLCK  RL  A 
Sbjct: 473 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEAT 532

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +G    +PN +T+TT++    +  +   GLE+   M R+G   +   Y T+I  F
Sbjct: 533 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGF 592

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSY-NTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            K+G +  A D  ++M+  GV  D ++  N L  L+ KE    A  +L D     G++ +
Sbjct: 593 RKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQMSVGYQLE 652



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 11/220 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-----------HGFVPELVTYN 49
           M+   + P   T N +L+GLC N    +AL MF+ +QK           +G  P++ TYN
Sbjct: 422 MVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYN 481

Query: 50  ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           ILI GL   G+   A  + +E+   G  P+ ITY +++    +  +     ++  +M  K
Sbjct: 482 ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSK 541

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
            ++ +   + T+I  + K GR+ +  +   +M   G+  + ++Y TLI+ + K G +  A
Sbjct: 542 SFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGA 601

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
             +  EM   G   D  T   ++ GL     +K A   LE
Sbjct: 602 LDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLE 641



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 94/197 (47%), Gaps = 2/197 (1%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L++A D    MV       ++ +  L+ +  + G+L+    L  +ME +   
Sbjct: 51  SGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVP 110

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           C+ Y+ TIL+   C    +  A      + K+GF   +  ++ ++  L  + +I  A+++
Sbjct: 111 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDL 170

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           F  M   +  T++++++ LC+  R+  A  LL   L+ G++  +     +VDG+   G  
Sbjct: 171 FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDT 230

Query: 303 REAKKIQSKIRMAKISH 319
             A  +  K  M ++SH
Sbjct: 231 VSALNLLRK--MEEVSH 245



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 14/212 (6%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P+ I +  +M    R  +  + + +   M+ +    + + +  ++  F    +L  A   
Sbjct: 76  PSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALST 135

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
             ++   G    +V+++TL++  C E ++  A  L  +M K     +  T T L++GLC+
Sbjct: 136 FGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCKP----NVVTFTTLMNGLCR 191

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
            G +  A   L+ M + G   N   Y  IVD + K G    A+N+   ME    +K +  
Sbjct: 192 EGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVV 251

Query: 254 Y------SSMVHNLCKAKRLPSASKLLLSCLK 279
                  + M++  C + R   A +LL   L+
Sbjct: 252 IWPLERRTCMINGFCSSGRWSEAQQLLQEMLE 283


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 137/294 (46%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +LNG CK      AL +F  L+  G  P ++TYNILI G C+ G L  AR
Sbjct: 374 LQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEAR 433

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ + G  P+  TYT +MK         +  E    M  KG   D F Y T I A 
Sbjct: 434 RLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAE 493

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           + +G + +A    E M+ +G+  D V+YN LI+  CK G L  A  L  +M   G + D 
Sbjct: 494 LTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDC 553

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI   C+ G ++ AR   + M   G   +   Y   +    + G +  A   F  
Sbjct: 554 ITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRK 613

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M  +    +  TY+ ++H LC+  R   A +     L+ G+   K     ++DG
Sbjct: 614 MLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDG 667



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 136/301 (45%), Gaps = 8/301 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M++GL ++   + A   F  ++  G  P+++TYN L+ G CKAG L+ A 
Sbjct: 339 IMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEAL 398

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  +L  +G AP  +TY  ++    R    +    +   M  +G   D   Y  ++   
Sbjct: 399 LLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGS 458

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                L  A ++ ++M++ G+Q D  +YNT I      G +  A+ L + M  +G   D 
Sbjct: 459 HNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDT 518

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ ILIDGLCK GN+  A+     M   G   +   Y C++    + G +  A   F+ 
Sbjct: 519 VTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKD 578

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M        + TY+  +H  C+   L SA       L+ GV       +   + L H+ C
Sbjct: 579 MISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVE----PNEITYNVLIHALC 634

Query: 302 R 302
           R
Sbjct: 635 R 635



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 38/237 (16%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+NI+++GLCK    ++A  +   +  +G  P+ +TY  LI   C+ G LR AR   K
Sbjct: 518 TVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFK 577

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G AP+A+TYT                                     I A+ + G
Sbjct: 578 DMISDGLAPSAVTYTVF-----------------------------------IHAYCRRG 602

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L  A  +  +M+ +GV+ + ++YN LI+  C+ G+ + AY    EM ++G   +KYT+T
Sbjct: 603 NLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYT 662

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +LIDG CK GN + A R + E M++ G   +   +  +      +G ++HAI   E+
Sbjct: 663 LLIDGNCKEGNWEDAMRFYFE-MHQNGIHPDYLTHKALFKGF-DEGHMNHAIEYLEN 717



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 123/277 (44%), Gaps = 37/277 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+++G C+    + A R+   + + G +P++ TY IL+KG   A  L  AR
Sbjct: 409 LAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAR 468

Query: 66  WILKELGDSGHAPNAITYTTIMKC---------CFRNRKYKLGLEILSA----------- 105
               E+   G  P+   Y T ++           FR R+  + LE +S+           
Sbjct: 469 EFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMM-LEGISSDTVTYNILIDG 527

Query: 106 ----------------MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
                           M   G   D   Y  +I A  + G L+EA  + + M++DG+   
Sbjct: 528 LCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPS 587

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
            V+Y   I+ YC+ G L +AY    +M ++G E ++ T+ +LI  LC+ G  + A  H  
Sbjct: 588 AVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFH 647

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            M + G   N   Y  ++D   K+G  + A+  +  M
Sbjct: 648 EMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEM 684



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 143/313 (45%), Gaps = 7/313 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRT 63
           + P   T+N +L+   K    D    + + ++  G   +P  VT+N++I GL + G L  
Sbjct: 233 IEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEE 292

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +++ +  S  A ++ TY  ++         K   ++   M+ +G       Y  +I 
Sbjct: 293 AAEMVEGMRLSKKA-SSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIH 351

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             ++ G+++ A     +M   G+Q D+++YN+L+N YCK G L+ A LL  ++   G   
Sbjct: 352 GLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAP 411

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              T+ ILIDG C+ G+++ AR   E M + G   ++  Y  ++        +  A   F
Sbjct: 412 TVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFF 471

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M  K    D F Y++ +        +  A +L    +  G+         ++DGL  +
Sbjct: 472 DEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKT 531

Query: 300 GCRREAKKIQSKI 312
           G   +AK +Q K+
Sbjct: 532 GNLNDAKDLQMKM 544



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 10/233 (4%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGD--SGHAPNAITYTTIMKCCFRNRKYK 97
           G  P +VTYN L+    K GR      +LKE+    SG  PN +T+  ++    R    +
Sbjct: 232 GIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLE 291

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
              E++  M R       F Y  +I   +  G +K+A D   +M  +G+   +V+YN +I
Sbjct: 292 EAAEMVEGM-RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMI 350

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +   + G++EAA +   EM   G + D  T+  L++G CKAG++K A L    +   G  
Sbjct: 351 HGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLA 410

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV---HNLCK 263
             +  YN ++D   + G ++ A  + E M     + D  TY+ ++   HN C 
Sbjct: 411 PTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACS 463



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 36/209 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  +++  C+      A + F+ +   G  P  VTY + I   C+ G 
Sbjct: 544 MVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGN 603

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A    +++ + G  PN ITY  +                                  
Sbjct: 604 LYSAYGWFRKMLEEGVEPNEITYNVL---------------------------------- 629

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I A  + GR + A  +  +M+  G+  +  +Y  LI+  CKEG  E A     EM + G
Sbjct: 630 -IHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNG 688

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLE 209
              D  TH  L  G    G++  A  +LE
Sbjct: 689 IHPDYLTHKALFKGF-DEGHMNHAIEYLE 716



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 98/185 (52%), Gaps = 7/185 (3%)

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCK 197
           +M+  G++  IV+YNTL++ + KEG+ +   +LL EME +G  C  +  TH ++I GL +
Sbjct: 227 EMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLAR 286

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFT 253
            G+++ A   +E M ++   ++   YN ++  L   G +  A ++   ME    +    T
Sbjct: 287 KGDLEEAAEMVEGM-RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVT 345

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           Y++M+H L ++ ++ +A    +     G++       ++++G   +G  +EA  +   +R
Sbjct: 346 YNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLR 405

Query: 314 MAKIS 318
            A ++
Sbjct: 406 HAGLA 410


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 45/333 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N ++N L +NR    A  +   + ++G  P +VTYN +IKG C  G  + A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   GH+ N +TY TI+K    +      L IL  M+  G   D + Y  +I  F K
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--------- 178
           I +++ A     +MV DG+  + V+Y  LI+ YCK+ KL+ A  LL+ M++         
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 179 --------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                                     +G   +  T+T +IDGLCK G+     L LE  N
Sbjct: 568 YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTS---LALEMFN 624

Query: 213 KI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
           K+   G   NL  Y+ ++  LG++GK++ A N+F  +E    + D  TY  M+     + 
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           ++  A   L   +K+G +        ++ GL++
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T    +  LC     ++A R+F  ++  G  P + TY  LI GLC +G 
Sbjct: 311 MILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGL 370

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +   +   G  PN +TY  ++     NR+ K    +L+ M R G + +   Y  
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +  +G  K+A   M  M+  G   ++V+YNT+I  YC  G   +A  +LD M   G
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 490

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D++++T LI G CK   ++ A      M   G   N   Y  ++D   KD K+D A 
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ E M+      +  TY+ ++H L K      A +L    ++ G+        A++DGL
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A ++ +K+
Sbjct: 611 CKNGSTSLALEMFNKM 626



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 151/322 (46%), Gaps = 20/322 (6%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P T T+  M+ G C+    D+AL++F  + K G  P  VTY+ LI GLC +GR+  A
Sbjct: 245 EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 304

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +++E+   G  P A T T  +        Y+    +   MK KG   + + Y  +I+ 
Sbjct: 305 FDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 364

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G LK A     +M  DGV  + V+YN LIN+  +  +++ A+++L+ M + G   +
Sbjct: 365 LCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  +I G C  G+ K A L +  M + G  +NL  YN I+      G    A+ + +
Sbjct: 425 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 484

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG----- 295
            M       D ++Y+ ++   CK  ++ SA  L    +  G+   +    A++DG     
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 544

Query: 296 -----------LRHSGCRREAK 306
                      ++ SGCR   +
Sbjct: 545 KLDTATSLLEHMKRSGCRPNVQ 566



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 4/254 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +L  L +   T   +  +  +   G  P L+ YN +I  LCK G +  A  I+K++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +S  +P+  TYT+++    R       L++ + M ++G   +   Y T+I      GR+ 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D + +M+  G+     +    I   C  G  E A+ L  +M+ +G E + YT+T LI
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 362

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            GLC +G +K A      M++ G   N   YN +++ L ++ +I +A  V   M      
Sbjct: 363 SGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCS 422

Query: 249 KDSFTYSSMVHNLC 262
            +  TY+ M+   C
Sbjct: 423 PNIVTYNEMIKGYC 436



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 11/284 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  +++G CK+   D A  +   +++ G  P + TYN+LI GL K   
Sbjct: 521 MVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNN 580

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K + + G  PN +TYT ++    +N    L LE+ + M  +G   +   Y +
Sbjct: 581 FSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSS 640

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  + G+++EA +   ++   G+  D ++Y  +I  Y   GK+E A+  L  M K G
Sbjct: 641 LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG 700

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHL--EYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            +   +T+ +LI GL     +   RL    + +    F       + +     K  ++D 
Sbjct: 701 CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 760

Query: 239 AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            ++V    +V++     ++V NL  A R   A++LL S +  G+
Sbjct: 761 GLSV----QVQN-----ALVSNLSTAGRWFEANELLGSMISQGL 795



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 9/306 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++  ++ G CK    ++A  +F  +   G  P  VTY  LI G CK  +L T
Sbjct: 489 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 548

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+ +  SG  PN  TY  ++    +   +    E+   M  +G   +   Y  +I 
Sbjct: 549 ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 608

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G    A +   +M+  G   ++++Y++LI    +EGK+E A  L  E+E+ G   
Sbjct: 609 GLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI-DHAINV 242
           D+ T+  +I+    +G ++ A   L  M K G    L  Y  ++  L  +  + D  +  
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 728

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
              +    SF Y +   +   A  + SA    L+ L  G+ +    Q A+V  L  +G  
Sbjct: 729 LPDVVPNCSFGYQTTDQD---AVSVMSAK---LAELDPGLSV--QVQNALVSNLSTAGRW 780

Query: 303 REAKKI 308
            EA ++
Sbjct: 781 FEANEL 786



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 59/308 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  M++GLCKN  T  AL MF  + + G +P L+TY+ LI+ L + G+
Sbjct: 591 MIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGK 650

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFD- 114
           +  A  +  EL   G  P+ ITY  +++    + K +     L  M + G     +T+  
Sbjct: 651 VEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGV 710

Query: 115 --------------------------GFGYCT---------------------------V 121
                                      FGY T                           +
Sbjct: 711 LIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNAL 770

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           ++     GR  EA + +  M++ G+  D  +YN+L+    +   ++ A  +   M  QG 
Sbjct: 771 VSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 830

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E     +  LI  LC+    K AR+  E M    ++ +      ++D L +DG  D  + 
Sbjct: 831 EVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCME 890

Query: 242 VFESMEVK 249
               ME +
Sbjct: 891 FLHIMETR 898



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 76/161 (47%)

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++K C         +  L  + + G     F Y  ++    ++G      D   +M+++G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           VQ +++ YN +IN  CK+G +  A  ++ ++ +     D +T+T +I G C+  ++  A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
                M K G + N   Y+ +++ L   G+++ A ++   M
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 149/287 (51%), Gaps = 11/287 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTAR 65
           TP   TFNI+++ L K+   + A ++F  +      +P +VTY  +I GLCK G+L  A 
Sbjct: 97  TPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAI 156

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  + ++G  PN ITY+ +++   +  +   G  +L  M R+G+  D   Y T++   
Sbjct: 157 ELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL EA + ++ M+  G    +V+YN+L+ L+C+  +++ A+ L+  M ++G   D 
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDV 276

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID------HA 239
             +  +I GLC+   +  A+  L+ M       ++  Y+ I+D L KD ++D       A
Sbjct: 277 INYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAA 336

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             + E M+      ++ TY+ ++  LC+A++   A  LL   + S V
Sbjct: 337 CEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEV 383



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 139/277 (50%), Gaps = 5/277 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P  A  N ++ GLCK     +AL  F+ +      P+++T+NIL+  L K+GR+  A 
Sbjct: 61  IPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 66  WILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            I + +  S    PN +TYTT++    ++ K    +E+L  M   G   +   Y  ++  
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR  +    +++M   G Q D++ YNTL+N  CK  +L+ A  L+  M + G    
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  L++  C++  +  A   ++ M++ G   ++  YN ++  L +D ++D A  + +
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            M     V D  TYS+++  LCK  R+ +  KL  +C
Sbjct: 301 QMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAAC 337



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 141/277 (50%), Gaps = 11/277 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++   C+++  D A R+ + + + G  P+++ YN +I GLC+  RL  A+ +
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRK----YKL--GLEILSAMKRKGYTFDGFGYCTV 121
           LK++  +   P+ ITY+TI+    ++ +    +KL    EIL  MK+ G   +   Y  V
Sbjct: 299 LKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    +  + ++A   + +M+   V  D+ S++ +I   CK   L+AAY +   M ++  
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           + +   +  LIDGL K G +  A    E M +  F   +  YN ++D L   G+I+ A+ 
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVR 477

Query: 242 VFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLL 274
           + E M  K+ F    +Y +++  LC+   +  A +L 
Sbjct: 478 MVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELF 514



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 132/273 (48%), Gaps = 5/273 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+  +++GLCK    D A  +   ++  G  P +  +N +IKGLCKAGR   A  
Sbjct: 27  VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALG 86

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAF 125
             K +  +   P+ IT+  ++    ++ + +   +I  +M            Y TVI   
Sbjct: 87  YFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGL 146

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L  A + ++ M   G   ++++Y+ L+   CK G+ +  + LL EM ++GF+ D 
Sbjct: 147 CKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDV 206

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  L++GLCK+  +  A   ++ M + G    +  YN +++   +  ++D A  + + 
Sbjct: 207 IMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQV 266

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  +    D   Y++++  LC+  RL  A  LL
Sbjct: 267 MSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 138/267 (51%), Gaps = 8/267 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N  LN L +      A+++FR   +   VP   TY  LI GLCKAG+L  A  +L E+ 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G  P    +  ++K   +  ++   L     +     T D   +  ++ A VK GR++
Sbjct: 58  DRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 133 EATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           EA    E M T    L ++V+Y T+IN  CK+GKL+ A  LLD M + G   +  T+++L
Sbjct: 118 EAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVL 177

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           ++GLCKAG        L+ M + GF  ++  YN +++ L K  ++D A+ + + M     
Sbjct: 178 VEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGC 237

Query: 252 F----TYSSMVHNLCKAKRLPSASKLL 274
           +    TY+S++   C++K++  A +L+
Sbjct: 238 YPTVVTYNSLMELFCRSKQVDRAFRLI 264



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 5/173 (2%)

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           F Y ++I    K G+L +A + +++M   G+   +  +N +I   CK G+   A      
Sbjct: 31  FTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKT 90

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDG 234
           +       D  T  IL+D L K+G ++ A    E M+       N+  Y  +++ L KDG
Sbjct: 91  VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDG 150

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           K+D AI + + M       +  TYS +V  LCKA R      LL    + G +
Sbjct: 151 KLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 88/182 (48%), Gaps = 1/182 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P  ++F++++  LCK+   D A ++F  + +    P  V Y  LI GL K G 
Sbjct: 378 MIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGE 437

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  EL      P   TY +++       + +  + ++  M  K    DG  Y  
Sbjct: 438 VDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGA 496

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    ++  ++EA +  + +   G  +++  YN L+N  CK+ +L  A+ + +++ + G
Sbjct: 497 LIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556

Query: 181 FE 182
           ++
Sbjct: 557 YK 558



 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 224 NCIVDRLGKDGKIDHAINVF-ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           NC ++ L + G+   A+ +F E   V + FTY S++H LCKA +L  A +LL      G+
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGI 61

Query: 283 RILKSAQKAVVDGLRHSG 300
               +    V+ GL  +G
Sbjct: 62  PPGVAVHNGVIKGLCKAG 79


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 153/314 (48%), Gaps = 6/314 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +  P    ++ +++GLCK+     AL +   +   G  P LVTY  LI+GLC  GR + A
Sbjct: 211 NWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEA 270

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+   G  P+  +   ++    +  K      ++  M   G   D F Y ++I  
Sbjct: 271 GSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDR 330

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           +    ++ EAT   E MV+ G   DIV+Y +LI+ +CK   +  A  LLDEM K GF  D
Sbjct: 331 YCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPD 390

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T T LI G C+ G    A+     M+K G   NL+    I+D L K   +  A+++F 
Sbjct: 391 VVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFH 450

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKAVVDGLRHS 299
           +ME      +   YS ++  +C A +L +A + L SCL + G++I   A   +++G    
Sbjct: 451 AMEKSNLDLNIVIYSIILDGMCSAGKLNTALE-LFSCLPAKGLQINVYAYTIMINGFAKQ 509

Query: 300 GCRREAKKIQSKIR 313
           G   +A+ + S + 
Sbjct: 510 GLLDKAEDLLSNME 523



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 141/305 (46%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T   N+++N LC  +       +   + K G  P +VT+ ILI GLC  G +  A  +
Sbjct: 109 PDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVEL 168

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +  +G+  +  TY  ++    +  K    +  L  M+ + +  +   Y TV+    K
Sbjct: 169 VDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCK 228

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + EA     +M   G++ ++V+Y  LI   C  G+ + A  LLDEM K G   D  +
Sbjct: 229 DGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQS 288

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             IL+D LCK G I  A+  + +M  +G   ++  YN ++DR     ++D A  VFE M 
Sbjct: 289 LNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMV 348

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D   Y+S++H  CK K +  A  LL   +K G          ++ G    G   
Sbjct: 349 SRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPL 408

Query: 304 EAKKI 308
            AK++
Sbjct: 409 AAKEL 413



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 4/304 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF I++NGLC       A+ +   ++K G+  ++ TY +LI GLCK G+   A 
Sbjct: 142 LEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAV 201

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+++ +    PN + Y+T+M    ++      L +   M  KG   +   Y  +I   
Sbjct: 202 GWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGL 261

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR KEA   +++M+  GV  D+ S N L+++ CKEGK+  A  ++  M   G   D 
Sbjct: 262 CNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDV 321

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LID  C    +  A    E M   G   ++ AY  ++    K   I+ A+++ + 
Sbjct: 322 FTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDE 381

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D  T+++++   C+  R  +A +L L+  K G          ++DGL  S  
Sbjct: 382 MIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQL 441

Query: 302 RREA 305
             EA
Sbjct: 442 LSEA 445



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 146/340 (42%), Gaps = 41/340 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++ GLC       A  +   + K G +P+L + NIL+  LCK G++  A+ +
Sbjct: 249 PNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSV 308

Query: 68  LKELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  +   G  P+  TY +++ + C +N+  +    +   M  +G   D   Y ++I  + 
Sbjct: 309 IGFMILVGEVPDVFTYNSLIDRYCLQNQMDE-ATRVFELMVSRGCLPDIVAYTSLIHGWC 367

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK--------------------- 165
           KI  + +A   +++M+  G   D+V++ TLI  +C+ G+                     
Sbjct: 368 KIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQ 427

Query: 166 --------------LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                         L  A  L   MEK   + +   ++I++DG+C AG +  A      +
Sbjct: 428 TCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCL 487

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
              G   N+ AY  +++   K G +D A ++  +ME    + DS TY+  V  L   + +
Sbjct: 488 PAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREI 547

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             + K L      G  +  +  + +++ L  +    E ++
Sbjct: 548 ARSIKYLTMMRDKGFSVDATTTEMIINYLSTNQGDNELRE 587



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 44/308 (14%)

Query: 10  TATFNIMLNGLCKN---RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           T   N M N  CK+   +  D AL  F  + K   +P ++ + +L+  + K     TA  
Sbjct: 38  TQFLNFMRNQ-CKSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAIS 96

Query: 67  ILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++KE+  S G  P+      ++      +    G  +L  M + G       +  +I   
Sbjct: 97  LVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGL 156

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G +  A + ++ +   G + D+ +Y  LIN  CK GK   A   L +ME++ +  + 
Sbjct: 157 CVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNV 216

Query: 186 YTHTILIDGLCKAGNI------------KGARLH-----------------------LEY 210
             ++ ++DGLCK G +            KG + +                       L+ 
Sbjct: 217 VVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDE 276

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKR 266
           M K+G   +L++ N +VD L K+GKI  A +V   M    EV D FTY+S++   C   +
Sbjct: 277 MMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQ 336

Query: 267 LPSASKLL 274
           +  A+++ 
Sbjct: 337 MDEATRVF 344



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 5/193 (2%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +  ++   VK+     A   +++M +  G++ D    N +IN  C    +   + +L  M
Sbjct: 78  FTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTM 137

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            K G E    T TILI+GLC  G++  A   ++++ K G+ S+++ Y  +++ L K GK 
Sbjct: 138 LKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKT 197

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A+     ME +    +   YS+++  LCK   +  A  L L     G++        +
Sbjct: 198 SEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCL 257

Query: 293 VDGLRHSGCRREA 305
           + GL + G  +EA
Sbjct: 258 IQGLCNFGRWKEA 270


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 150/306 (49%), Gaps = 39/306 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI----------------- 50
           P   T++I+++GLCK     +A+R+ R ++K GF P +VTY I                 
Sbjct: 344 PDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 403

Query: 51  ------------------LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                             +I  LCK GR+  A  +++E+   G  P+  +Y TI+     
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           N + +    +   +  +G   +G  Y T+I A ++ GR ++A    ++M+  G  LD+VS
Sbjct: 464 NEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVS 523

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN LI   CK+G ++ + +LL+EM ++G + +  ++ ILI  LCK   ++ A    + M 
Sbjct: 524 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML 583

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
             G   ++  YN +++ L K G +  A+N+ E +  +    D  TY+ ++   CK + L 
Sbjct: 584 NQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLD 643

Query: 269 SASKLL 274
            A+ LL
Sbjct: 644 DAAMLL 649



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 49/350 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV------------------- 46
           + P T TF +    LC+    D AL + RG+ +HG VP+ V                   
Sbjct: 171 VPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAA 230

Query: 47  ----------------TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                           T++ +++G+C  GR+R A  ++  +   G  P  +TY  +++  
Sbjct: 231 TLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGL 290

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            R R+      +L  +           + TVI   +  G+L EAT+  E M   G Q D 
Sbjct: 291 CRVRQADEARAMLGRVPELNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDA 346

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y+ L++  CK G++ +A  LL EMEK+GF  +  T+TI++   CK G     R  LE 
Sbjct: 347 HTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 406

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M+  G   N + YN ++  L KDG++D A+ + + M  +    D  +Y++++++LC  ++
Sbjct: 407 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 466

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
           +  A  +  + L+ GV         ++  L   G      + Q  +R+AK
Sbjct: 467 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDG------RWQDAVRLAK 510



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 4/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN ++ G         A  ++  +   G  P+  TY+IL+ GLCK GR+ +A  +L+E+ 
Sbjct: 314 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 373

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G APN +TYT ++    +N  +     +L  M  KG T +  GY  +I A  K GR+ 
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +++M + G   DI SYNT+I   C   ++E A  + + + ++G   +  T+  +I
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
             L + G  + A    + M   G   ++ +YN ++  + KDG +D ++ + E M  K   
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            ++ +Y+ ++  LCK +R+  A +L    L  G+         +++GL   G    A  +
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 613

Query: 309 QSKI 312
             K+
Sbjct: 614 LEKL 617



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 12/282 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL--VTYNILIKGLCKAGRLRTAR 65
           P   T+  +L GLC+ R  D A  M       G VPEL  V +N +I G    G+L  A 
Sbjct: 278 PGVMTYGFLLQGLCRVRQADEARAML------GRVPELNVVLFNTVIGGCLAEGKLAEAT 331

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +G  G  P+A TY+ +M    +  +    + +L  M++KG+  +   Y  V+ +F
Sbjct: 332 ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSF 391

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G   +    +E+M   G+ L+   YN +I   CK+G+++ A  L+ EM  QG   D 
Sbjct: 392 CKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDI 451

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  +I  LC    ++ A    E + + G  +N   YN I+  L +DG+   A+ + + 
Sbjct: 452 CSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKE 511

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M +     D  +Y+ ++  +CK   +  +  LL    + G++
Sbjct: 512 MILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 112/222 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT  +  +N M+  LCK+   D A+ + + ++  G  P++ +YN +I  LC   ++  A 
Sbjct: 412 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAE 471

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + L + G   N ITY TI+    R+ +++  + +   M   G + D   Y  +I A 
Sbjct: 472 HMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAM 531

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +  +   +E+M   G++ + VSYN LI+  CKE ++  A  L  +M  QG   D 
Sbjct: 532 CKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDI 591

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            T+  LI+GLCK G +  A   LE ++      ++  YN ++
Sbjct: 592 VTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 93/163 (57%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++ L ++    +A+R+ + +  HG   ++V+YN LIK +CK G +  +  +L+E+
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 547

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PN ++Y  ++    + R+ +  LE+   M  +G   D   Y T+I    K+G +
Sbjct: 548 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 607

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
             A + +E++  + V  DI++YN LI+ +CK   L+ A +LL+
Sbjct: 608 HAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++NGLCK  +   AL +   L      P+++TYNILI   CK   
Sbjct: 582 MLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRL 641

Query: 61  LRTARWIL 68
           L  A  +L
Sbjct: 642 LDDAAMLL 649


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 7/304 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P   T+  +++G CK      AL +F+ ++  G  P   TY  LI GL +  +
Sbjct: 449 MFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKK 508

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++ ++ + G  P  ITYTT+++   +  ++     +   M++ G T D   Y  
Sbjct: 509 LHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNV 568

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +  A  K GR +EA  +   +V  GV L  V+Y +L++ + K G  + A +L+++M  +G
Sbjct: 569 LTDALCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 625

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D YT+++L+  LCK   +  A   L+ M   G   N+ AY  I+  + K+GK DHA 
Sbjct: 626 CKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAK 685

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M        + TY+  + + CK  R+  A  L+    + GV          ++G 
Sbjct: 686 SLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGC 745

Query: 297 RHSG 300
            H G
Sbjct: 746 GHMG 749



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 7/307 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP   TF  ++NG CK    D+ALR+   +       +L  Y +LI  L K  RL+ A+
Sbjct: 384 FTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAK 443

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L E+  +G APN +TYT+I+    +       LE+   M+ +G   + + Y ++I   
Sbjct: 444 ETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGL 503

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++  +L +A   + +M  DG+   +++Y TLI   CK+ + + A+ L + ME+ G   D+
Sbjct: 504 IQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDE 563

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             + +L D LCK+G  + A     ++ + G       Y  +VD   K G  D A  + E 
Sbjct: 564 QAYNVLTDALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 620

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D +TYS ++  LCK K+L  A  +L     SGV+    A   ++  +   G 
Sbjct: 621 MVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680

Query: 302 RREAKKI 308
              AK +
Sbjct: 681 HDHAKSL 687



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 136/314 (43%), Gaps = 37/314 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M++G CK+    +AL +   ++++G  P+  TYN LI GLC  G+L  A 
Sbjct: 315 VVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAE 373

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L      G  P  IT+T ++    +  +    L + S M       D   Y  +I   
Sbjct: 374 ELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVL 433

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG--------------------- 164
           +K  RLKEA + + +M  +G+  ++V+Y ++I+ YCK G                     
Sbjct: 434 IKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNA 493

Query: 165 --------------KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                         KL  A  L+ +M++ G      T+T LI G CK      A    E 
Sbjct: 494 WTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEM 553

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-VFESMEVKDSFTYSSMVHNLCKAKRLPS 269
           M + G   + +AYN + D L K G+ + A + +     V    TY+S+V    KA     
Sbjct: 554 MEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDF 613

Query: 270 ASKLLLSCLKSGVR 283
           A+ L+   +  G +
Sbjct: 614 AAVLIEKMVNEGCK 627



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 133/321 (41%), Gaps = 52/321 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+  ++ G CK    DNA R+F  ++++G  P+   YN+L   LCK+GR   A 
Sbjct: 524 ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAY 583

Query: 66  WIL--------------------------------KELGDSGHAPNAITYTTIMKCCFRN 93
             L                                +++ + G   +  TY+ +++   + 
Sbjct: 584 SFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQ 643

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           +K    L IL  M   G   +   Y  +I+  +K G+   A     +M++ G +    +Y
Sbjct: 644 KKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTY 703

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
              I+ YCK G++E A  L+ EME+ G   D  T+ I I+G    G I  A   L+ M  
Sbjct: 704 TVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVD 763

Query: 214 IGFDSNLEAYNCIVDRLGKDGKID-HAIN------------VFESMEV-------KDSFT 253
              + N   Y  ++    K   I+ H ++            V++ +E            T
Sbjct: 764 ASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVT 823

Query: 254 YSSMVHNLCKAKRLPSASKLL 274
           YSS++   CKA RL  A  LL
Sbjct: 824 YSSIIAGFCKATRLEEACVLL 844



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 140/327 (42%), Gaps = 21/327 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+N M+   CK      A R F  L++ G   +  T N L+ G C+   LR A 
Sbjct: 175 LLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKAC 234

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+L  +   G   N  +YT +++     R  +  L ++  M   G + +   Y  +I   
Sbjct: 235 WLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGL 294

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ +A   +++M   GV   + +YN +I+ YCK G+++ A  +   ME+ G   D 
Sbjct: 295 CKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDD 354

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LI GLC  G +  A   L      GF   +  +  +++   K  +ID A+ V  +
Sbjct: 355 WTYNSLIYGLC-GGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSN 413

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG------ 295
           M       D   Y  +++ L K  RL  A + L     +G+        +++DG      
Sbjct: 414 MISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGM 473

Query: 296 ----------LRHSGCRREAKKIQSKI 312
                     + H GC   A    S I
Sbjct: 474 VGAALEVFKLMEHEGCHPNAWTYGSLI 500



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 140/299 (46%), Gaps = 5/299 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N+ L  L +   T+   +++  L + G +P+ VTYN +I   CK G L  A      L 
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLR 206

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +SG   +  T   ++    R    +    +L  M   G   + + Y  +I    +   ++
Sbjct: 207 ESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVR 266

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +  MV DG  L++ +Y  LI   CKEG++  A  LLDEM  +G     +T+  +I
Sbjct: 267 EALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMI 326

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK+G +K A      M + G + +   YN ++  L   GK+D A  +      +   
Sbjct: 327 DGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARGFT 385

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
               T++++++  CKA+R+  A ++  + + S  ++   A   +++ L      +EAK+
Sbjct: 386 PTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKE 444



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 132/303 (43%), Gaps = 23/303 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+ + ++  CK    + A  +   +++ G  P++VTYNI I G    G 
Sbjct: 691 MISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGY 750

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   LK + D+   PN  TY  ++       K+ L + +++A     +  D  G   
Sbjct: 751 IDRAFSTLKRMVDASCEPNCWTYWLLL-------KHFLKMSLINA-----HYVDTSGMWN 798

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I        L      +E+M+  G+   +V+Y+++I  +CK  +LE A +LLD M  + 
Sbjct: 799 WI-------ELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKD 851

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++  +T+LI   C       A   +  M + GF   LE+Y+ ++  L  +G  D A 
Sbjct: 852 ISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAK 911

Query: 241 NVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  +   D       +  +   L KA  +   S+LL +      RI   +   + D +
Sbjct: 912 SLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSI 971

Query: 297 RHS 299
           R +
Sbjct: 972 REA 974


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG CK    D   R+   ++K    P++ TY+ LI  LCK  ++  A 
Sbjct: 271 LQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAH 330

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN + +TT++    RN +  L  E    M  KG   D   Y T++  F
Sbjct: 331 GLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGF 390

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L  A + ++ M+  G++ D ++Y TLI+ +C+ G +E A  +  EM++ G E D+
Sbjct: 391 CKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDR 450

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              + L+ G+CK G +  A   L  M + G   +   Y  ++D   K G       + + 
Sbjct: 451 VGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKE 510

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M+    V    TY+ +++ LCK  ++ +A  LL + L  GV
Sbjct: 511 MQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGV 551



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            FNI++N  CK     +A ++F  + K    P +V++N LI G CK G L     +  ++
Sbjct: 242 VFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQM 301

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             S   P+  TY+ ++    +  K      +   M ++G   +   + T+I    + G +
Sbjct: 302 EKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEI 361

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
               +  ++M++ G+Q DIV YNTL+N +CK G L AA  ++D M ++G   DK T+T L
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTL 421

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDG C+ G+++ A    + M++ G + +   ++ +V  + K+G++  A      M     
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGI 481

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             D  TY+ M+   CK     +  KLL
Sbjct: 482 KPDDVTYTMMMDAFCKKGDAQTGFKLL 508



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    F  +++G  +N   D     ++ +   G  P++V YN L+ G CK G L  AR
Sbjct: 341 LIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAAR 400

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I+  +   G  P+ ITYTT++    R    +  LEI   M + G   D  G+  ++   
Sbjct: 401 NIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGM 460

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ +A   + +M+  G++ D V+Y  +++ +CK+G  +  + LL EM+  G     
Sbjct: 461 CKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSV 520

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA------ 239
            T+ +L++GLCK G +K A + L+ M  IG   +   YN ++     +G   HA      
Sbjct: 521 VTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL-----EGHHRHANSSKRY 575

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAKR 266
           I   E   V D  +Y S+V+ L +A +
Sbjct: 576 IQKPEIGIVADLASYKSIVNELDRASK 602



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 8/217 (3%)

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           +EIL A    G+  + + +  ++  F K G + +A    +++    +Q  +VS+NTLIN 
Sbjct: 229 MEILDA----GFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLING 284

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           YCK G L+  + L  +MEK     D +T++ LI+ LCK   + GA    + M K G   N
Sbjct: 285 YCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPN 344

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              +  ++    ++G+ID     ++ M  K    D   Y+++V+  CK   L +A  ++ 
Sbjct: 345 DVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVD 404

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             ++ G+R  K     ++DG    G    A +I+ ++
Sbjct: 405 GMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEM 441



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 39/272 (14%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           GF   +  +NIL+   CK G +  A+ +  E+      P  +++ T++            
Sbjct: 235 GFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLIN----------- 283

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
                            GYC       K+G L E      QM     + D+ +Y+ LIN 
Sbjct: 284 -----------------GYC-------KVGNLDEGFRLKHQMEKSRTRPDVFTYSALINA 319

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CKE K++ A+ L DEM K+G   +    T LI G  + G I   +   + M   G   +
Sbjct: 320 LCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPD 379

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
           +  YN +V+   K+G +  A N+ + M  +    D  TY++++   C+   + +A ++  
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRK 439

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
              ++G+ + +    A+V G+   G   +A++
Sbjct: 440 EMDQNGIELDRVGFSALVCGMCKEGRVIDAER 471



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 99/199 (49%), Gaps = 3/199 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+  +++G C+    + AL + + + ++G   + V ++ L+ G+CK GR
Sbjct: 406 MIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGR 465

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L+E+  +G  P+ +TYT +M    +    + G ++L  M+  G+      Y  
Sbjct: 466 VIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNV 525

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K+G++K A   ++ M+  GV  D ++YNTL+  + +       Y+   E+   G
Sbjct: 526 LLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEI---G 582

Query: 181 FECDKYTHTILIDGLCKAG 199
              D  ++  +++ L +A 
Sbjct: 583 IVADLASYKSIVNELDRAS 601


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 149/287 (51%), Gaps = 11/287 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTAR 65
           TP   TFNI+++ L K+   + A ++F  +      +P +VTY  +I GLCK G+L  A 
Sbjct: 97  TPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAI 156

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  + ++G  PN ITY+ +++   +  +   G  +L  M R+G+  D   Y T++   
Sbjct: 157 ELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL EA + ++ M+  G    +V+YN+L+ L+C+  +++ A+ L+  M ++G   D 
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDV 276

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID------HA 239
             +  +I GLC+   +  A+  L+ M       ++  Y+ I+D L KD ++D       A
Sbjct: 277 INYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAA 336

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             + E M+      ++ TY+ ++  LC+A++   A  LL   + S V
Sbjct: 337 CEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEV 383



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 139/277 (50%), Gaps = 5/277 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P  A  N ++ GLCK     +AL  F+ +      P+++T+NIL+  L K+GR+  A 
Sbjct: 61  IPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 66  WILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            I + +  S    PN +TYTT++    ++ K    +E+L  M   G   +   Y  ++  
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR  +    +++M   G Q D++ YNTL+N  CK  +L+ A  L+  M + G    
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  L++  C++  +  A   ++ M++ G   ++  YN ++  L +D ++D A  + +
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            M     V D  TYS+++  LCK  R+ +  KL  +C
Sbjct: 301 QMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAAC 337



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 139/277 (50%), Gaps = 11/277 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++   C+++  D A R+ + + + G  P+++ YN +I GLC+  RL  A+ +
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298

Query: 68  LKELGDSGHAPNAITYTTIMKCCFR------NRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
           LK++  +   P+ ITY+TI+    +      + K +   EIL  MK+ G   +   Y  V
Sbjct: 299 LKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    +  + ++A   + +M+   V  D+ S++ +I   CK   L+AAY +   M ++  
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           + +   +  LIDGL K G +  A    E M +  F   +  YN ++D L   G+I+ A+ 
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVR 477

Query: 242 VFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLL 274
           + E M  K+ F    +Y +++  LC+   +  A +L 
Sbjct: 478 MVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELF 514



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 132/273 (48%), Gaps = 5/273 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+  +++GLCK    D A  +   ++  G  P +  +N +I+GLCKAGR   A  
Sbjct: 27  VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALG 86

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAF 125
             K +  +   P+ IT+  ++    ++ + +   +I  +M            Y TVI   
Sbjct: 87  YFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGL 146

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L  A + ++ M   G   ++++Y+ L+   CK G+ +  + LL EM ++GF+ D 
Sbjct: 147 CKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDV 206

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  L++GLCK+  +  A   ++ M + G    +  YN +++   +  ++D A  + + 
Sbjct: 207 IMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQV 266

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  +    D   Y++++  LC+  RL  A  LL
Sbjct: 267 MSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 138/267 (51%), Gaps = 8/267 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N  LN L +      A+++FR   +   VP   TY  LI GLCKAG+L  A  +L E+ 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G  P    +  +++   +  ++   L     +     T D   +  ++ A VK GR++
Sbjct: 58  DRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 133 EATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           EA    E M T    L ++V+Y T+IN  CK+GKL+ A  LLD M + G   +  T+++L
Sbjct: 118 EAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVL 177

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           ++GLCKAG        L+ M + GF  ++  YN +++ L K  ++D A+ + + M     
Sbjct: 178 VEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGC 237

Query: 252 F----TYSSMVHNLCKAKRLPSASKLL 274
           +    TY+S++   C++K++  A +L+
Sbjct: 238 YPTVVTYNSLMELFCRSKQVDRAFRLI 264



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 5/173 (2%)

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           F Y ++I    K G+L +A + +++M   G+   +  +N +I   CK G+   A      
Sbjct: 31  FTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKT 90

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDG 234
           +       D  T  IL+D L K+G ++ A    E M+       N+  Y  +++ L KDG
Sbjct: 91  VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDG 150

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           K+D AI + + M       +  TYS +V  LCKA R      LL    + G +
Sbjct: 151 KLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 88/182 (48%), Gaps = 1/182 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P  ++F++++  LCK+   D A ++F  + +    P  V Y  LI GL K G 
Sbjct: 378 MIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGE 437

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  EL      P   TY +++       + +  + ++  M  K    DG  Y  
Sbjct: 438 VDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGA 496

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    ++  ++EA +  + +   G  +++  YN L+N  CK+ +L  A+ + +++ + G
Sbjct: 497 LIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556

Query: 181 FE 182
           ++
Sbjct: 557 YK 558



 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 224 NCIVDRLGKDGKIDHAINVF-ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           NC ++ L + G+   A+ +F E   V + FTY S++H LCKA +L  A +LL      G+
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGI 61

Query: 283 RILKSAQKAVVDGLRHSG 300
               +    V+ GL  +G
Sbjct: 62  PPGVAVHNGVIRGLCKAG 79


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 159/345 (46%), Gaps = 45/345 (13%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           CT TFNIML  LC       AL + R + +    P  VTYN +I G C  GR++ A  I+
Sbjct: 482 CTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIM 537

Query: 69  KELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFV 126
           +E+ + G  APN  TY T++    +  +    +++   M  KG    +   Y  +I  + 
Sbjct: 538 REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC 597

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G+L  A  Y ++MV  GV + + +YN L++    +G+   AY L++EM  +G   D +
Sbjct: 598 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 657

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIG---------------------------FD-- 217
           T+ ILI+G CK GN+K A    E M++ G                           FD  
Sbjct: 658 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 717

Query: 218 ------SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
                  +L  YN +++     G ID A  +   ME K    D  TY++++  LC   R+
Sbjct: 718 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 777

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             A KL+    + G++        ++ G    G  ++A +I++++
Sbjct: 778 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM 822



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 4/297 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P    +N ++ G C     D AL     + + G    + TYN+L+  L   GR   
Sbjct: 580 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 639

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +++E+G  G AP+  TY  ++    +    K  LEI   M R+G       Y  +I 
Sbjct: 640 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 699

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  K G+++E     ++ V  G++ D+V YN LIN +   G ++ A+ ++ EMEK+    
Sbjct: 700 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 759

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  L+ GLC  G +  AR  ++ M + G   +L  YN ++      G +  A+ + 
Sbjct: 760 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIR 819

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             M  K       TY++++  LCK  +   A  ++   +++G+    S   ++++GL
Sbjct: 820 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 876



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 145/280 (51%), Gaps = 12/280 (4%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILS 104
            T+NI+++ LC AG+   A  +L+++      PNA+TY T++   C R R  +  L+I+ 
Sbjct: 484 TTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGR-VQAALDIMR 538

Query: 105 AMK-RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCK 162
            M+ R G   + + Y TVI+ + K+GR+ EA    ++M+T G V+ + V YN LI  YC 
Sbjct: 539 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 598

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           +GKL+ A L  D M ++G      T+ +L+  L   G    A   +E M   G   ++  
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 658

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN +++   K+G +  A+ +FE+M  +       TY+++++ L K  ++    KL    +
Sbjct: 659 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 718

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           + G+R       A+++    SG    A +I  ++   +I+
Sbjct: 719 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 758


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 152/316 (48%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++ G+CK    + A  +   L   G  P++++YNIL++     G+
Sbjct: 243 MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGK 302

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ E+   G  PN +TY+ ++    R  +    + +L  M  K  T D + Y  
Sbjct: 303 WDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDP 362

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+A  K GRL  A   M+ M+++G   DIV+YNT++   CK G    A  + +++   G
Sbjct: 363 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 422

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++  +I  L   G+   A   +  M   G D +   YN ++  L +DG ++ AI
Sbjct: 423 CPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAI 482

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + ME         +Y+ ++  LCK +R+  A  +    ++ G R  ++    +++G+
Sbjct: 483 GLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 542

Query: 297 RHSGCRREAKKIQSKI 312
             +G R EA ++ + +
Sbjct: 543 GFAGWRTEAMELANSL 558



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 143/296 (48%), Gaps = 10/296 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ I++         + A+++   +   G +P++ TYN +I+G+CK G +  A  +
Sbjct: 215 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAEL 274

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  L   G  P+ I+Y  +++      K+  G ++++ M  +G   +   Y  +I++  +
Sbjct: 275 ITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCR 334

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA   ++ M+   +  D  SY+ LI+  CKEG+L+ A  ++D M   G   D   
Sbjct: 335 FGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVN 394

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +  ++  LCK GN   A   LE  NK+   G   N+ +YN ++  L   G    A+ +  
Sbjct: 395 YNTILAALCKNGNANQA---LEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVP 451

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +M  K    D  TY+S++  LC+   +  A  LL    +SG R    +   V+ GL
Sbjct: 452 AMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGL 507



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 134/260 (51%), Gaps = 4/260 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G CK    + A ++   ++  GF+P++VTYNI+I  LC   +L  A  +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +L      P  ITYT +++           +++L  M  +G   D + Y  +I    K
Sbjct: 205 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 264

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A + +  + + G + D++SYN L+  +  +GK +    L+ EM  +G E +K T
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 324

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILI  LC+ G I  A   L+ M +     +  +Y+ ++  L K+G++D AI + + M 
Sbjct: 325 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 384

Query: 248 ----VKDSFTYSSMVHNLCK 263
               + D   Y++++  LCK
Sbjct: 385 SNGCLPDIVNYNTILAALCK 404



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 124/249 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I+++ LC+    D A+ + + + +    P+  +Y+ LI  LCK GRL  A  I
Sbjct: 320 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +  +G  P+ + Y TI+    +N      LEI + ++  G   +   Y T+I+A   
Sbjct: 380 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 439

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A   +  M++ G+  D ++YN+LI+  C++G +E A  LLD+ME+ GF     +
Sbjct: 440 CGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVIS 499

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + I++ GLCK   I  A      M + G   N   Y  +++ +G  G    A+ +  S+ 
Sbjct: 500 YNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLF 559

Query: 248 VKDSFTYSS 256
            +D  +  S
Sbjct: 560 SRDVISQDS 568



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 121/263 (46%), Gaps = 5/263 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +LN  CK    + +L     L   G+ P+++    LIKG      +  A  ++ E+ +S 
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILESH 142

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+   Y  ++    +  + +   ++L+ MK +G+  D   Y  +I +     +L  A 
Sbjct: 143 TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 202

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             ++Q++ D     +++Y  LI     EG +  A  LL+EM  +G   D YT+  +I G+
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 262

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G ++ A   +  +   G + ++ +YN ++      GK D    +   M  +    + 
Sbjct: 263 CKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 322

Query: 252 FTYSSMVHNLCKAKRLPSASKLL 274
            TYS ++ +LC+  R+  A  +L
Sbjct: 323 VTYSILISSLCRFGRIDEAISVL 345


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 150/306 (49%), Gaps = 39/306 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI----------------- 50
           P   T++I+++GLCK     +A+R+ R ++K GF P +VTY I                 
Sbjct: 328 PDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 387

Query: 51  ------------------LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                             +I  LCK GR+  A  +++E+   G  P+  +Y TI+     
Sbjct: 388 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 447

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           N + +    +   +  +G   +G  Y T+I A ++ GR ++A    ++M+  G  LD+VS
Sbjct: 448 NEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVS 507

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN LI   CK+G ++ + +LL+EM ++G + +  ++ ILI  LCK   ++ A    + M 
Sbjct: 508 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML 567

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
             G   ++  YN +++ L K G +  A+N+ E +  +    D  TY+ ++   CK + L 
Sbjct: 568 NQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLD 627

Query: 269 SASKLL 274
            A+ LL
Sbjct: 628 DAAMLL 633



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 49/350 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV------------------- 46
           + P T TF +    LC+    D AL + RG+ +HG VP+ V                   
Sbjct: 155 VPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAA 214

Query: 47  ----------------TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                           T++ +++G+C  GR+R A  ++  +   G  P  +TY  +++  
Sbjct: 215 TLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGL 274

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            R R+      +L  +           + TVI   +  G+L EAT+  E M   G Q D 
Sbjct: 275 CRVRQADEARAMLGRVPELNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDA 330

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y+ L++  CK G++ +A  LL EMEK+GF  +  T+TI++   CK G     R  LE 
Sbjct: 331 HTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 390

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M+  G   N + YN ++  L KDG++D A+ + + M  +    D  +Y++++++LC  ++
Sbjct: 391 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 450

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
           +  A  +  + L+ GV         ++  L   G      + Q  +R+AK
Sbjct: 451 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDG------RWQDAVRLAK 494



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 4/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN ++ G         A  ++  +   G  P+  TY+IL+ GLCK GR+ +A  +L+E+ 
Sbjct: 298 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 357

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G APN +TYT ++    +N  +     +L  M  KG T +  GY  +I A  K GR+ 
Sbjct: 358 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 417

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +++M + G   DI SYNT+I   C   ++E A  + + + ++G   +  T+  +I
Sbjct: 418 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 477

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
             L + G  + A    + M   G   ++ +YN ++  + KDG +D ++ + E M  K   
Sbjct: 478 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 537

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            ++ +Y+ ++  LCK +R+  A +L    L  G+         +++GL   G    A  +
Sbjct: 538 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 597

Query: 309 QSKI 312
             K+
Sbjct: 598 LEKL 601



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 12/262 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL--VTYNILIKGLCKAGRLRTAR 65
           P   T+  +L GLC+ R  D A  M       G VPEL  V +N +I G    G+L  A 
Sbjct: 262 PGVMTYGFLLQGLCRVRQADEARAML------GRVPELNVVLFNTVIGGCLAEGKLAEAT 315

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +G  G  P+A TY+ +M    +  +    + +L  M++KG+  +   Y  V+ +F
Sbjct: 316 ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSF 375

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G   +    +E+M   G+ L+   YN +I   CK+G+++ A  L+ EM  QG   D 
Sbjct: 376 CKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDI 435

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  +I  LC    ++ A    E + + G  +N   YN I+  L +DG+   A+ + + 
Sbjct: 436 CSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKE 495

Query: 246 MEVK----DSFTYSSMVHNLCK 263
           M +     D  +Y+ ++  +CK
Sbjct: 496 MILHGCSLDVVSYNGLIKAMCK 517



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 93/163 (57%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++ L ++    +A+R+ + +  HG   ++V+YN LIK +CK G +  +  +L+E+
Sbjct: 472 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 531

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PN ++Y  ++    + R+ +  LE+   M  +G   D   Y T+I    K+G +
Sbjct: 532 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 591

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
             A + +E++  + V  DI++YN LI+ +CK   L+ A +LL+
Sbjct: 592 HAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 634



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++NGLCK  +   AL +   L      P+++TYNILI   CK   
Sbjct: 566 MLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRL 625

Query: 61  LRTARWIL 68
           L  A  +L
Sbjct: 626 LDDAAMLL 633


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 162/317 (51%), Gaps = 17/317 (5%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L+ L K+R+   A  + R L++  F P++VTYN L  G C+A     A  +L+++ 
Sbjct: 166 FNSLLDALGKSRHASKAASLVRALERR-FPPDVVTYNTLADGWCRAKDTSRALDLLRQMA 224

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----FDGFGYCTVIAAFVK 127
           +SG  P   TY  I+K  FR  + +        MK++G        D   Y T+I     
Sbjct: 225 ESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGV 284

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L +A    ++M  +G    + +YN LI + CK+G +E A  + D+M ++ +  +  T
Sbjct: 285 AGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVT 344

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LI GLC  G I  A   +E M   G +  ++ YN ++    ++G+I+ A+ +FE M 
Sbjct: 345 YTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFERMS 404

Query: 248 -----VKDSFTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
                + +  TY+ ++  +   KR   + +A+++++  ++ G    +     V++GL  +
Sbjct: 405 KGEDCLPNQDTYNIIISAMFVRKRAEDMATAARMVMEMVERGYLPRRFMLNRVLNGLMLT 464

Query: 300 GCR---REAKKIQSKIR 313
           G +   R+  ++Q K R
Sbjct: 465 GNQQISRDLLRMQEKYR 481



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 8/197 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-----VPELVTYNILIKGLCKAGR 60
           +TP   T+NI+L G  +     +A   F  ++K G       P++V+Y  +I GL  AG+
Sbjct: 228 VTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQ 287

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +  E+   G  P+  TY  +++   +    +  + +   M RK Y  +   Y  
Sbjct: 288 LDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTV 347

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I     +G++  A   ME+M  +G +  + +YN LI    +EG++E A  L + M K G
Sbjct: 348 LIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFERMSK-G 406

Query: 181 FEC--DKYTHTILIDGL 195
            +C  ++ T+ I+I  +
Sbjct: 407 EDCLPNQDTYNIIISAM 423



 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 4/142 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   T+ +++ GLC     D A+++   ++  G  P + TYN+LI+   + G 
Sbjct: 333 MVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGE 392

Query: 61  LRTARWILKELGDSGH-APNAITYTTIMKCCF---RNRKYKLGLEILSAMKRKGYTFDGF 116
           +  A  + + +       PN  TY  I+   F   R         ++  M  +GY    F
Sbjct: 393 IEKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKRAEDMATAARMVMEMVERGYLPRRF 452

Query: 117 GYCTVIAAFVKIGRLKEATDYM 138
               V+   +  G  + + D +
Sbjct: 453 MLNRVLNGLMLTGNQQISRDLL 474


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 153/310 (49%), Gaps = 40/310 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +N +LN L K    D A+ +FR   +  FVP++ ++NILI+GLC+ G +  A    + +
Sbjct: 181 VYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNM 240

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           G+ G  P+ ++Y T++                             G+C       ++  +
Sbjct: 241 GNFGCFPDIVSYNTLIN----------------------------GFC-------RVNEI 265

Query: 132 KEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            +  D + E M+  GV  D+++Y ++I+ YCK G ++AA  L DEM   G + + +T  +
Sbjct: 266 SKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNV 325

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LIDG  K GN++ A +  E M  +G   ++  +  ++D   ++G+++  + ++E M+V+ 
Sbjct: 326 LIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRN 385

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              + +TY+ +++ LCK  R+  A   L     S V         V+DG   +G   EA 
Sbjct: 386 LSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEAN 445

Query: 307 KIQSKIRMAK 316
            I ++++  K
Sbjct: 446 FIVAEMQEKK 455



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 133/271 (49%), Gaps = 1/271 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+  +++G CK      A  +F  +   G  P   T+N+LI G  K G 
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGN 335

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R+A  + +++   G  P+ +T+T+++    R  +   GL++   MK +  + + + Y  
Sbjct: 336 MRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAV 395

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K  R++EA +++  + +  V      YN +I+ +CK GK++ A  ++ EM+++ 
Sbjct: 396 LINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKK 455

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              DK T TILI G C  G +  A      M +I    +    N ++  L K G  + A 
Sbjct: 456 CRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEAS 515

Query: 241 NVFESMEVKDSFTYSSMVHNLC-KAKRLPSA 270
            + ++   K +   SS+   L  K+ R+P A
Sbjct: 516 QIKQAALQKLNLGLSSLGSPLTRKSSRVPVA 546



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 122/271 (45%), Gaps = 40/271 (14%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           TY++L++ LCK G   +A+ +   +   G  P++                   LE+L   
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSI-----------------LELL--- 150

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
                          ++++ ++G+L  A +++ ++   G+++    YN L+N+  K+  +
Sbjct: 151 ---------------VSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLV 195

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A LL  E  +  F  D Y+  ILI GLC+ G I  A    + M   G   ++ +YN +
Sbjct: 196 DEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTL 255

Query: 227 VDRLGKDGKIDHAINVF-ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++   +  +I    ++  E M +K    D  TY+S++   CK   + +AS+L    + SG
Sbjct: 256 INGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG 315

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           ++        ++DG    G  R A  +  K+
Sbjct: 316 IKPNDFTFNVLIDGFGKVGNMRSAMVMYEKM 346


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 159/345 (46%), Gaps = 45/345 (13%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           CT TFNIML  LC       AL + R + +    P  VTYN +I G C  GR++ A  I+
Sbjct: 487 CTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIM 542

Query: 69  KELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFV 126
           +E+ + G  APN  TY T++    +  +    +++   M  KG    +   Y  +I  + 
Sbjct: 543 REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC 602

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G+L  A  Y ++MV  GV + + +YN L++    +G+   AY L++EM  +G   D +
Sbjct: 603 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 662

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIG---------------------------FD-- 217
           T+ ILI+G CK GN+K A    E M++ G                           FD  
Sbjct: 663 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 722

Query: 218 ------SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
                  +L  YN +++     G ID A  +   ME K    D  TY++++  LC   R+
Sbjct: 723 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 782

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             A KL+    + G++        ++ G    G  ++A +I++++
Sbjct: 783 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEM 827



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 4/297 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P    +N ++ G C     D AL     + + G    + TYN+L+  L   GR   
Sbjct: 585 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 644

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +++E+G  G AP+  TY  ++    +    K  LEI   M R+G       Y  +I 
Sbjct: 645 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 704

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  K G+++E     ++ V  G++ D+V YN LIN +   G ++ A+ ++ EMEK+    
Sbjct: 705 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 764

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  L+ GLC  G +  AR  ++ M + G   +L  YN ++      G +  A+ + 
Sbjct: 765 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIR 824

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             M  K       TY++++  LCK  +   A  ++   +++G+    S   ++++GL
Sbjct: 825 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 881



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 145/280 (51%), Gaps = 12/280 (4%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILS 104
            T+NI+++ LC AG+   A  +L+++      PNA+TY T++   C R R  +  L+I+ 
Sbjct: 489 TTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGR-VQAALDIMR 543

Query: 105 AMK-RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCK 162
            M+ R G   + + Y TVI+ + K+GR+ EA    ++M+T G V+ + V YN LI  YC 
Sbjct: 544 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 603

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           +GKL+ A L  D M ++G      T+ +L+  L   G    A   +E M   G   ++  
Sbjct: 604 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 663

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN +++   K+G +  A+ +FE+M  +       TY+++++ L K  ++    KL    +
Sbjct: 664 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 723

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           + G+R       A+++    SG    A +I  ++   +I+
Sbjct: 724 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIA 763


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 153/310 (49%), Gaps = 40/310 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +N +LN L K    D A+ +FR   +  FVP++ ++NILI+GLC+ G +  A    + +
Sbjct: 181 VYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNM 240

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           G+ G  P+ ++Y T++                             G+C       ++  +
Sbjct: 241 GNFGCFPDIVSYNTLIN----------------------------GFC-------RVNEI 265

Query: 132 KEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            +  D + E M+  GV  D+++Y ++I+ YCK G ++AA  L DEM   G + + +T  +
Sbjct: 266 SKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNV 325

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LIDG  K GN++ A +  E M  +G   ++  +  ++D   ++G+++  + ++E M+V+ 
Sbjct: 326 LIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRN 385

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              + +TY+ +++ LCK  R+  A   L     S V         V+DG   +G   EA 
Sbjct: 386 LSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEAN 445

Query: 307 KIQSKIRMAK 316
            I ++++  K
Sbjct: 446 FIVAEMQEKK 455



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 134/271 (49%), Gaps = 1/271 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+  +++G CK      A  +F  +   G  P   T+N+LI G  K G 
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGN 335

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R+A  + +++   G  P+ +T+T+++    R  +   GL++   MK +  + + + Y  
Sbjct: 336 MRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAV 395

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K  R++EA +++  + +  V      YN +I+ +CK GK++ A  ++ EM+++ 
Sbjct: 396 LINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKK 455

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              DK T TILI G C  G +  A      M +I    +    N ++  L K G  + A 
Sbjct: 456 CRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEAS 515

Query: 241 NVFESMEVKDSFTYSSMVHNLC-KAKRLPSA 270
            + ++   K +   SS+   L  K+ R+P+A
Sbjct: 516 QIKQAALQKLNLGLSSLGSPLTRKSSRVPAA 546



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 122/271 (45%), Gaps = 40/271 (14%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           TY++L++ LCK G   +A+ +   +   G  P++                   LE+L   
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSI-----------------LELL--- 150

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
                          ++++ ++G+L  A +++ ++   G+++    YN L+N+  K+  +
Sbjct: 151 ---------------VSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLV 195

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A LL  E  +  F  D Y+  ILI GLC+ G I  A    + M   G   ++ +YN +
Sbjct: 196 DEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTL 255

Query: 227 VDRLGKDGKIDHAINVF-ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++   +  +I    ++  E M +K    D  TY+S++   CK   + +AS+L    + SG
Sbjct: 256 INGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG 315

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           ++        ++DG    G  R A  +  K+
Sbjct: 316 IKPNDFTFNVLIDGFGKVGNMRSAMVMYEKM 346


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++ GLC       AL +F  +   GF P +VTY  LI GLCK G    A  +
Sbjct: 138 PDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRL 197

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN + ++T++    ++R+      I S M  KG + +   Y ++I    K
Sbjct: 198 LRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 257

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  M +MV   +  D+ + NT+++  CKEG +  A+ ++D M  +G E +  T
Sbjct: 258 LCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVT 317

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A    + M      +N+ +YN +++   K   +D A+ +FE M 
Sbjct: 318 YNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 377

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                 ++ TY++++H LC   RL  A  L    +  G
Sbjct: 378 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG 415



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 154/316 (48%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T  A+R+ R +++    P +V ++ LI  LCK  +
Sbjct: 166 MIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ 225

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I  E+   G +PN +TY +++    +  ++K    +++ M       D F   T
Sbjct: 226 VTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNT 285

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G + EA D ++ M+  GV+ ++V+YN L++ +C   +++ A  + D M  + 
Sbjct: 286 VVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKD 345

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++  LI+G CK  ++  A    E M++     N   YN ++  L   G++  AI
Sbjct: 346 CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAI 405

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M    ++ D  TY ++   LCK + L  A  LL +   S           ++DG+
Sbjct: 406 SLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGM 465

Query: 297 RHSGCRREAKKIQSKI 312
             +G   +A+ + S +
Sbjct: 466 CRAGELEDARDLFSNL 481



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 4/304 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T  I++N LC     D A      + K G  P+  T+  LI+GLC  G++  A 
Sbjct: 101 IPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEAL 160

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TY T++    +       + +L +M++     +   + T+I + 
Sbjct: 161 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSL 220

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA +   +M+T G+  +IV+YN+LI+  CK  + +    L++EM       D 
Sbjct: 221 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 280

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T   ++D LCK G +  A   ++ M   G + N+  YN ++D      ++D A+ VF++
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  KD      +Y+++++  CK + +  A  L     +  +         ++ GL H G 
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 302 RREA 305
            ++A
Sbjct: 401 LQDA 404



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 1/240 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D      ++N ++NG CK +  D A+ +F  + +    P  VTYN LI GLC  GR
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +  E+   G  P+ +TY T+     +NR     + +L A++   +  D   Y T
Sbjct: 401 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 460

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G L++A D    + + G+Q ++ +YN +I+  CK+G L  A  L  EM K G
Sbjct: 461 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 520

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+ ++  G  +          LE M   GF  ++     +V  L  DG +D ++
Sbjct: 521 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG-LDQSV 579



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 146/383 (38%), Gaps = 74/383 (19%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P    F+ +++ LCK+R    A  +F  +   G  P +VTYN LI GLCK    + 
Sbjct: 204 GNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH 263

Query: 64  ARWILKELGDS-----------------------------------GHAPNAITYTTIMK 88
              ++ E+ DS                                   G  PN +TY  +M 
Sbjct: 264 VTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMD 323

Query: 89  C-CFRN----------------------------------RKYKLGLEILSAMKRKGYTF 113
             C RN                                  +     + +   M R+  T 
Sbjct: 324 GHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTP 383

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           +   Y T+I     +GRL++A     +MV  G   D+V+Y TL +  CK   L+ A  LL
Sbjct: 384 NTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 443

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
             +E   ++ D   +T ++DG+C+AG ++ AR     ++  G   N+  YN ++  L K 
Sbjct: 444 KAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 503

Query: 234 GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G +  A  +F  M       +  TY+ +     +        +LL   L  G  +  S  
Sbjct: 504 GLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTT 563

Query: 290 KAVVDGLRHSGCRREAKKIQSKI 312
             +V  L   G  +  K+I  KI
Sbjct: 564 TLLVGMLSDDGLDQSVKQILCKI 586



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 128/309 (41%), Gaps = 43/309 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN +L  + K ++    L + R +   G  P++ T  I+I  LC   R+  A   
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+A T+TT+++                            G C        
Sbjct: 128 LAKILKLGHQPDATTFTTLIR----------------------------GLCVE------ 153

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ EA    ++M+ +G Q ++V+Y TLIN  CK G   AA  LL  ME+   + +   
Sbjct: 154 -GKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVV 212

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + LID LCK   +  A      M   G   N+  YN ++  L K  +  H   +   M 
Sbjct: 213 FSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMV 272

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D FT +++V  LCK   +  A  ++   +  GV        A++DG     C R
Sbjct: 273 DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG----HCLR 328

Query: 304 EAKKIQSKI 312
               +  K+
Sbjct: 329 NEVDVAVKV 337



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA     +M+        V +N L+    K         L  +M+  G   D YT  I
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           +I+ LC    +  A   L  + K+G   +   +  ++  L  +GKI  A+++F+ M + +
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM-IGE 169

Query: 251 SF-----TYSSMVHNLCKAKRLPSASKLLLS 276
            F     TY ++++ LCK     +A +LL S
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 200


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 4/309 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +      +N +++GLCK ++ D+A  +F  ++  G  P++ TYN LI  LC  GR   
Sbjct: 250 GKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSD 309

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++ +    PN +T+ +++    +  K     ++   M ++    +   Y ++I 
Sbjct: 310 ASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLIN 369

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA      MV+     D+V+YNTLI  +CK  ++E    L  EM ++G   
Sbjct: 370 GFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 429

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+  LI GL +AG+   A+   + M   G   ++  Y+ ++D L K GK++ A+ VF
Sbjct: 430 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 489

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++      + +TY+ M+  +CKA ++     L  S    GV+        ++ G    
Sbjct: 490 EYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 549

Query: 300 GCRREAKKI 308
           G + EA  +
Sbjct: 550 GLKEEADAL 558



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 148/295 (50%), Gaps = 5/295 (1%)

Query: 18  NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           NGL + +  D+A+ +F  + K    P ++ ++ L+  + K  +      + +++ + G  
Sbjct: 55  NGLSELKL-DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 113

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
            N  TY+ ++ C  R  +  L L +L  M + GY  D     +++  +    R+ EA   
Sbjct: 114 HNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVAL 173

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ++QMV  G + D V++NTLI+      K   A  L+D M  +G + D +T+  +++GLCK
Sbjct: 174 VDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCK 233

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
            G+I  A   L+ M K   ++N+  YN I+D L K   +D A ++F  ME K    D FT
Sbjct: 234 RGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFT 293

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           Y+S++  LC   R   AS+LL   ++  +        +++D     G   EA+K+
Sbjct: 294 YNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKL 348



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 132/265 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TFN +++   K      A ++F  + +    P +VTYN LI G C   R
Sbjct: 317 MIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR 376

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ I   +      P+ +TY T++K   + ++ + G+E+   M ++G   +   Y T
Sbjct: 377 LDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 436

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G    A    ++MV+DGV  DI++Y+ L++  CK GKLE A ++ + ++K  
Sbjct: 437 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 496

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E + YT+ I+I+G+CKAG ++        ++  G   N+  Y  ++    + G  + A 
Sbjct: 497 MEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 556

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAK 265
            +F  M+   +   S   + L +A+
Sbjct: 557 ALFREMKEDGTLPDSGCYNTLIRAR 581



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 138/267 (51%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++I+LN  C+      AL +   + K G+ P++VT + L+ G C   R+  A  ++ ++
Sbjct: 118 TYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 177

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+ +T+ T++   F + K    + ++  M  +G   D F Y TV+    K G +
Sbjct: 178 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 237

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A   +++M    ++ ++V YNT+I+  CK   ++ A+ L ++ME +G + D +T+  L
Sbjct: 238 DLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSL 297

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + N+  +N ++D   K+GK+  A  +F+ M  +  
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 357

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             +  TY+S+++  C   RL  A ++ 
Sbjct: 358 DPNIVTYNSLINGFCMHDRLDEAQQIF 384



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 4/274 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGLCK    D AL + + ++K      +V YN +I GLCK   
Sbjct: 212 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKH 271

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++   G  P+  TY +++ C     ++     +LS M  +    +   + +
Sbjct: 272 MDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNS 331

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I AF K G+L EA    ++M+   +  +IV+YN+LIN +C   +L+ A  +   M  + 
Sbjct: 332 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 391

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI G CKA  ++        M++ G   N   YN ++  L + G  D A 
Sbjct: 392 CLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 451

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSA 270
            +F+ M       D  TYS ++  LCK  +L  A
Sbjct: 452 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 485



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 139/293 (47%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TFN +++GL  +     A+ +   +   G  P+L TY  ++ GLCK G +  A  +
Sbjct: 184 PDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSL 243

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++       N + Y TI+    + +      ++ + M+ KG   D F Y ++I+    
Sbjct: 244 LKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCN 303

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  +A+  +  M+   +  ++V++N+LI+ + KEGKL  A  L DEM ++  + +  T
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVT 363

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+G C    +  A+     M       ++  YN ++    K  +++  + +F  M 
Sbjct: 364 YNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMS 423

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               V ++ TY++++  L +A     A K+    +  GV         ++DGL
Sbjct: 424 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 476



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 5/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N ++NG C +   D A ++F  +     +P++VTYN LIKG CKA R
Sbjct: 352 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKR 411

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +E+   G   N +TY T+++  F+     +  +I   M   G   D   Y  
Sbjct: 412 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 471

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+L++A    E +    ++ +I +YN +I   CK GK+E  + L   +  +G
Sbjct: 472 LLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +   +T +I G C+ G  + A      M + G   +   YN ++    +DG    + 
Sbjct: 532 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 591

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
            + + M     V D+ T  SMV N+    RL  +   +LS
Sbjct: 592 ELIKEMRSCGFVGDASTI-SMVINMLHDGRLEKSYLEMLS 630



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 122/263 (46%), Gaps = 4/263 (1%)

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +  E+  S   P+ I ++ ++    +  K+ + + +   M+  G   + + Y 
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++  F +  +L  A   + +M+  G + DIV+ ++L+N YC   ++  A  L+D+M + 
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G++ D  T   LI GL        A   ++ M   G   +L  Y  +V+ L K G ID A
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +++ + ME      +   Y++++  LCK K +  A  L       G++       +++  
Sbjct: 241 LSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISC 300

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
           L + G   +A ++ S +   KI+
Sbjct: 301 LCNYGRWSDASRLLSDMIERKIN 323


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 147/304 (48%), Gaps = 7/304 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P    +  +++G CK      AL +FR ++  G  P   TY+ LI GL +  +
Sbjct: 360 MFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQK 419

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++ ++ + G  P  ITYTT+++   +  ++     +   M++ G T D   Y  
Sbjct: 420 LHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNV 479

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +  A  K GR +EA  +   +V  GV L  V+Y +L++ + K G  + A +L+++M  +G
Sbjct: 480 LTHALCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 536

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D YT+++L+  LCK   +  A   L+ M   G   N+ AY  I+  + K+GK DHA 
Sbjct: 537 CKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAK 596

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M        + TY+  + + CK  ++  A  L+    + GV          ++G 
Sbjct: 597 SMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGC 656

Query: 297 RHSG 300
            H G
Sbjct: 657 GHMG 660



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 7/307 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP   TF  ++NG CK    D+ALR+   +       +L  Y +LI  L K  R + A+
Sbjct: 295 FTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAK 354

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + E+  +G APN + YT+I+    +  K    LE+   M+ +G   + + Y ++I   
Sbjct: 355 ETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGL 414

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++  +L +A   + +M  DG+   +++Y TLI   CK+ + + A+ L + ME+ G   D+
Sbjct: 415 IQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDE 474

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             + +L   LCK+G  + A     ++ + G       Y  +VD   K G  D A  + E 
Sbjct: 475 QAYNVLTHALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 531

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    DS+TYS ++  LCK K+L  A  +L     SGV+    A   ++  +   G 
Sbjct: 532 MVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGK 591

Query: 302 RREAKKI 308
              AK +
Sbjct: 592 HDHAKSM 598



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 145/299 (48%), Gaps = 8/299 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M++G CK+    +AL +   ++++G  P+  TYNILI GLC   +   A 
Sbjct: 226 VVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLC-GEKPDEAE 284

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L +    G  P  IT+T I+    +  +    L + ++M       D   Y  +I   
Sbjct: 285 ELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVL 344

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K  R KEA + + +M  +G+  ++V Y ++I+ YCK GK+ AA  +   ME +G   + 
Sbjct: 345 IKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNA 404

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T++ LI GL +   +  A   +  M + G    +  Y  ++    K  + D+A  +FE 
Sbjct: 405 WTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEM 464

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           ME      D   Y+ + H LCK+ R   A   L   ++ GV + K    ++VDG   +G
Sbjct: 465 MEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAG 520



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 136/275 (49%), Gaps = 5/275 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++ I++ GLC+ R    AL +   + + G    L TY +LIKGLCK GR+  AR +L+E+
Sbjct: 162 SYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEM 221

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  TY  ++    ++ + K  L I + M+R G   D + Y  +I       + 
Sbjct: 222 PLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCG-EKP 280

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + +   +  G    ++++  +IN YCK  +++ A  +   M     + D   + +L
Sbjct: 281 DEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVL 340

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I+ L K    K A+  +  M   G   N+  Y  I+D   K GK+  A+ VF  ME +  
Sbjct: 341 INVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGC 400

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             +++TYSS+++ L + ++L  A  L+    + G+
Sbjct: 401 RPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGI 435



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 136/321 (42%), Gaps = 52/321 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+  ++ G CK    DNA R+F  ++++G  P+   YN+L   LCK+GR   A 
Sbjct: 435 ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAY 494

Query: 66  WIL--------------------------------KELGDSGHAPNAITYTTIMKCCFRN 93
             L                                +++ + G   ++ TY+ +++   + 
Sbjct: 495 SFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQ 554

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           +K    L IL  M   G   +   Y  +I+  +K G+   A     +M++ G +    +Y
Sbjct: 555 KKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTY 614

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
              I+ YCK G++E A  L+ EME+ G   D  T+ + I+G    G +  A   L+ M  
Sbjct: 615 TVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMID 674

Query: 214 IGFDSNLEAYNCIVDRLGKDGKID-HAIN------------VFESME--VK-----DSFT 253
              + N   Y  ++    K   +D H ++            V++ +E  VK      + T
Sbjct: 675 ASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVT 734

Query: 254 YSSMVHNLCKAKRLPSASKLL 274
           YSS++   CKA RL  A  L 
Sbjct: 735 YSSIIAGFCKATRLEEACVLF 755



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 119/285 (41%), Gaps = 21/285 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+ + ++  CK    + A  +   +++ G  P++VTYN+ I G    G 
Sbjct: 602 MISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGY 661

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNR----------------KYKLGLEILS 104
           +  A   LK + D+   PN  TY  ++K   +                  +     ++L 
Sbjct: 662 MDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLE 721

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            M + G       Y ++IA F K  RL+EA    + M    +  +   Y  LI   C   
Sbjct: 722 RMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIK 781

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR-LHLEYMNKIGFDSNLEAY 223
               A   + +M + GF+    ++  LI GLC  G+   A+ L  + +    ++ N  A+
Sbjct: 782 LFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMEDYNHNEVAW 841

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             + D L K G +D    +  +ME +    DS TYS +  N+ +A
Sbjct: 842 KILNDGLLKAGHVDFCSQLLSAMENRHCQIDSETYSMVTDNIHEA 886



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 118/274 (43%), Gaps = 21/274 (7%)

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           G LR A W+L  +   G   N  +YT +++     R  +  L +L  M + G + +   Y
Sbjct: 139 GDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTY 198

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +I    K GR+  A   +E+M   GV   + +YN +I+ YCK G+++ A  +   ME+
Sbjct: 199 TLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMER 258

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G   D +T+ ILI GLC     +   L  + + + GF   +  +  I++   K  +ID 
Sbjct: 259 NGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVR-GFTPTVITFTNIINGYCKAERIDD 317

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A+ V  SM       D   Y  +++ L K  R   A + +     +G+        +++D
Sbjct: 318 ALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIID 377

Query: 295 G----------------LRHSGCRREAKKIQSKI 312
           G                + H GCR  A    S I
Sbjct: 378 GYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLI 411


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 120/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 227 ALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI  LC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I +++      P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
            + +  T+T++I+  CK G++      L+ M + G+  N+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNV 416



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+   CK G +  A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + S M+  G   D + Y  +I    K  ++ +A    ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K A+  ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++ LC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   G+ PN +T
Sbjct: 407 MQRDGYLPNVVT 418


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++ GLC       AL +F  +   GF P +VTY  LI GLCK G    A  +
Sbjct: 138 PDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRL 197

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN + ++T++    ++R+      I S M  KG + +   Y ++I    K
Sbjct: 198 LRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 257

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  M +MV   +  D+ + NT+++  CKEG +  A+ ++D M  +G E +  T
Sbjct: 258 LCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVT 317

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A    + M      +N+ +YN +++   K   +D A+ +FE M 
Sbjct: 318 YNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 377

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                 ++ TY++++H LC   RL  A  L    +  G
Sbjct: 378 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG 415



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 154/316 (48%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T  A+R+ R +++    P +V ++ LI  LCK  +
Sbjct: 166 MIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ 225

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I  E+   G +PN +TY +++    +  ++K    +++ M       D F   T
Sbjct: 226 VTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNT 285

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G + EA D ++ M+  GV+ ++V+YN L++ +C   +++ A  + D M  + 
Sbjct: 286 VVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKD 345

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++  LI+G CK  ++  A    E M++     N   YN ++  L   G++  AI
Sbjct: 346 CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAI 405

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M    ++ D  TY ++   LCK + L  A  LL +   S           ++DG+
Sbjct: 406 SLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGM 465

Query: 297 RHSGCRREAKKIQSKI 312
             +G   +A+ + S +
Sbjct: 466 CRAGELEDARDLFSNL 481



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 4/304 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T  I++N LC     D A      + K G  P+  T+  LI+GLC  G++  A 
Sbjct: 101 IPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEAL 160

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TY T++    +       + +L +M++     +   + T+I + 
Sbjct: 161 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSL 220

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA +   +M+T G+  +IV+YN+LI+  CK  + +    L++EM       D 
Sbjct: 221 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 280

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T   ++D LCK G +  A   ++ M   G + N+  YN ++D      ++D A+ VF++
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  KD      +Y+++++  CK + +  A  L     +  +         ++ GL H G 
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 302 RREA 305
            ++A
Sbjct: 401 LQDA 404



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 1/240 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D      ++N ++NG CK +  D A+ +F  + +    P  VTYN LI GLC  GR
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +  E+   G  P+ +TY T+     +NR     + +L A++   +  D   Y T
Sbjct: 401 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 460

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G L++A D    + + G+Q ++ +YN +I+  CK+G L  A  L  EM K G
Sbjct: 461 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 520

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+ ++  G  +          LE M   GF  ++     +V  L  DG +D ++
Sbjct: 521 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG-LDQSV 579



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 145/382 (37%), Gaps = 74/382 (19%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P    F+ +++ LCK+R    A  +F  +   G  P +VTYN LI GLCK    + 
Sbjct: 204 GNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH 263

Query: 64  ARWILKELGDS-----------------------------------GHAPNAITYTTIMK 88
              ++ E+ DS                                   G  PN +TY  +M 
Sbjct: 264 VTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMD 323

Query: 89  C-CFRN----------------------------------RKYKLGLEILSAMKRKGYTF 113
             C RN                                  +     + +   M R+  T 
Sbjct: 324 GHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTP 383

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           +   Y T+I     +GRL++A     +MV  G   D+V+Y TL +  CK   L+ A  LL
Sbjct: 384 NTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 443

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
             +E   ++ D   +T ++DG+C+AG ++ AR     ++  G   N+  YN ++  L K 
Sbjct: 444 KAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 503

Query: 234 GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G +  A  +F  M       +  TY+ +     +        +LL   L  G  +  S  
Sbjct: 504 GLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTT 563

Query: 290 KAVVDGLRHSGCRREAKKIQSK 311
             +V  L   G  +  K+I  K
Sbjct: 564 TLLVGMLSDDGLDQSVKQILCK 585



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 128/309 (41%), Gaps = 43/309 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN +L  + K ++    L + R +   G  P++ T  I+I  LC   R+  A   
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+A T+TT+++                            G C        
Sbjct: 128 LAKILKLGHQPDATTFTTLIR----------------------------GLCVE------ 153

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ EA    ++M+ +G Q ++V+Y TLIN  CK G   AA  LL  ME+   + +   
Sbjct: 154 -GKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVV 212

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + LID LCK   +  A      M   G   N+  YN ++  L K  +  H   +   M 
Sbjct: 213 FSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMV 272

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D FT +++V  LCK   +  A  ++   +  GV        A++DG     C R
Sbjct: 273 DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG----HCLR 328

Query: 304 EAKKIQSKI 312
               +  K+
Sbjct: 329 NEVDVAVKV 337



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA     +M+        V +N L+    K         L  +M+  G   D YT  I
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           +I+ LC    +  A   L  + K+G   +   +  ++  L  +GKI  A+++F+ M + +
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM-IGE 169

Query: 251 SF-----TYSSMVHNLCKAKRLPSASKLLLS 276
            F     TY ++++ LCK     +A +LL S
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 200


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 152/316 (48%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++ G+CK    + A  +   L   G  P++++YNIL++     G+
Sbjct: 233 MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGK 292

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ E+   G  PN +TY+ ++    R  +    + +L  M  K  T D + Y  
Sbjct: 293 WDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDP 352

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+A  K GRL  A   M+ M+++G   DIV+YNT++   CK G    A  + +++   G
Sbjct: 353 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 412

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  ++  +I  L   G+   A   +  M   G D +   YN ++  L +DG ++ AI
Sbjct: 413 CPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAI 472

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + ME         +Y+ ++  LCK +R+  A  +    ++ G R  ++    +++G+
Sbjct: 473 GLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 532

Query: 297 RHSGCRREAKKIQSKI 312
             +G R EA ++ + +
Sbjct: 533 GFAGWRTEAMELANSL 548



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 143/296 (48%), Gaps = 10/296 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ I++         + A+++   +   G +P++ TYN +I+G+CK G +  A  +
Sbjct: 205 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAEL 264

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  L   G  P+ I+Y  +++      K+  G ++++ M  +G   +   Y  +I++  +
Sbjct: 265 ITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCR 324

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA   ++ M+   +  D  SY+ LI+  CKEG+L+ A  ++D M   G   D   
Sbjct: 325 FGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVN 384

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +  ++  LCK GN   A   LE  NK+   G   N+ +YN ++  L   G    A+ +  
Sbjct: 385 YNTILAALCKNGNANQA---LEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVP 441

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +M  K    D  TY+S++  LC+   +  A  LL    +SG R    +   V+ GL
Sbjct: 442 AMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGL 497



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 134/260 (51%), Gaps = 4/260 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G CK    + A ++   ++  GF+P++VTYNI+I  LC   +L  A  +
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +L      P  ITYT +++           +++L  M  +G   D + Y  +I    K
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A + +  + + G + D++SYN L+  +  +GK +    L+ EM  +G E +K T
Sbjct: 255 EGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 314

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILI  LC+ G I  A   L+ M +     +  +Y+ ++  L K+G++D AI + + M 
Sbjct: 315 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 374

Query: 248 ----VKDSFTYSSMVHNLCK 263
               + D   Y++++  LCK
Sbjct: 375 SNGCLPDIVNYNTILAALCK 394



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 124/249 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I+++ LC+    D A+ + + + +    P+  +Y+ LI  LCK GRL  A  I
Sbjct: 310 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 369

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +  +G  P+ + Y TI+    +N      LEI + ++  G   +   Y T+I+A   
Sbjct: 370 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 429

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A   +  M++ GV  D ++YN+LI+  C++G +E A  LLD+ME+ GF     +
Sbjct: 430 CGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVIS 489

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + I++ GLCK   I  A      M + G   N   Y  +++ +G  G    A+ +  S+ 
Sbjct: 490 YNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLF 549

Query: 248 VKDSFTYSS 256
            +D  +  S
Sbjct: 550 SRDVISQDS 558



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +LN  CK    + +L     L   G+ P+++    LIKG      +  A  ++ E+ +S 
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILESH 132

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+   Y  ++    +  + +   ++L+ MK +G+  D   Y  +I +     +L  A 
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 192

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             ++Q++ D     +++Y  LI     EG +  A  LL+EM  +G   D YT+  +I G+
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 252

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G ++ A   +  +   G   ++ +YN ++      GK D    +   M  +    + 
Sbjct: 253 CKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 312

Query: 252 FTYSSMVHNLCKAKRLPSASKLL 274
            TYS ++ +LC+  R+  A  +L
Sbjct: 313 VTYSILISSLCRFGRIDEAISVL 335


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 134/271 (49%), Gaps = 7/271 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NIM++ LCK +  D A  +   +  +G  P++VTY+ L+ GLCK G+L  A  +
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  P++ T  +I+    +  K    L  L  MK +G T D   Y T++    K
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA  ++ +MV      D+ SY  +I   C+ G+   A+ +  EM K+G   D   
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DGL + G      L LE +       +   +  ++D L K GK + A  V E M 
Sbjct: 517 YHSLLDGLARNGL---EDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMA 573

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
                 D+FTY S+V  L K  ++  A +L+
Sbjct: 574 DAGFPADAFTYISVVSGLRKLGKVDKARQLV 604



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 151/337 (44%), Gaps = 24/337 (7%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   TFN +L GLC       A  +F  + K G  P +++Y+ L+ GLCKAGRL  
Sbjct: 138 GGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + +E+ +    P+ + YT+ +    +  +     +    M  KG   D   + TVI 
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 124 AFVKIGRLKEATDYM-----------------EQMVTDGVQLDIVSYNTLINLYCKEGKL 166
              K G  +EA + M                 E+M++         +NTLI+  CK  +L
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRL 317

Query: 167 EAAYLLLDEMEK-QGFECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
               LL   M+  + F C     T+ I++D LCKA  +  A+  +  M   G   ++  Y
Sbjct: 318 PDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTY 377

Query: 224 NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           + +VD L K GK+D A ++ E M       DSFT +S+++ L KA ++  A   L +   
Sbjct: 378 SALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKA 437

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            G          ++DGL  +G   EA    +K+  AK
Sbjct: 438 RGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 146/314 (46%), Gaps = 25/314 (7%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILKE 70
           T++++++G CK    D+AL +F+ +   G  VP++VT+N L+KGLC   R+  A  + + 
Sbjct: 110 TYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEY 169

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  +G  PN I+Y+T++    +  +      +   M  K    D   Y + +    K  R
Sbjct: 170 MAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANR 229

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL----------LLDEMEKQG 180
           + EA D   +MVT G + D V+++T+I + CK+G  E A            +LDE  K  
Sbjct: 230 VAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTF 289

Query: 181 FECDKYTHT-------ILIDGLCKAGNIKGARL---HLEYMNKIGFDSNLEAYNCIVDRL 230
            E     H         LI  +CK+  +    L    ++ M +     NLE YN +VD L
Sbjct: 290 EEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNL 349

Query: 231 GKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            K  ++D A  +   M       D  TYS++V  LCK  +L  A  LL    K GV    
Sbjct: 350 CKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDS 409

Query: 287 SAQKAVVDGLRHSG 300
               ++++ L  +G
Sbjct: 410 FTDASILNALSKAG 423



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 144/291 (49%), Gaps = 23/291 (7%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N  L+ L K      A   F+ +Q+ G+ P+  TY+I+++GLCKAG L  A+ +L +L
Sbjct: 40  TYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQL 99

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGR 130
            +SG   N ITY+ ++  C +  +    LEI   M   G    D   + +++       R
Sbjct: 100 RESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGER 159

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + EA    E M   G + +++SY+TL++  CK G+L+ A  L +EM ++    D   +T 
Sbjct: 160 MSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTS 219

Query: 191 LIDGLCKAGNI------------KGARLH-LEYMNKIGF----DSNLEAYNCIVDRLGKD 233
            + GLCKA  +            KG++   + +   IG         EA N +++ L + 
Sbjct: 220 FVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRS 279

Query: 234 GKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
           G +D A   FE M        +  +++++H +CK+KRLP    LL   +KS
Sbjct: 280 GMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGV-LLFQRMKS 329



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 145/318 (45%), Gaps = 24/318 (7%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY-----------------N 49
            P    +   + GLCK      A    R +   G   + V +                 N
Sbjct: 211 VPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQN 270

Query: 50  ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-- 107
            +I+ LC++G L  A    +E+    H P+A  + T++    ++++   G+ +   MK  
Sbjct: 271 QMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSM 330

Query: 108 RKGYTFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           ++ Y       Y  ++    K  +L EA + + +M   G+  D+V+Y+ L++  CK GKL
Sbjct: 331 KEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKL 390

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           + A  LL+EM K+G   D +T   +++ L KAG +  A  HLE M   G   +L  YN +
Sbjct: 391 DRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTL 450

Query: 227 VDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +D L K G+ID AI     M       D F+Y+ ++  LC++ +   A  +    +K GV
Sbjct: 451 LDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGV 510

Query: 283 RILKSAQKAVVDGLRHSG 300
                   +++DGL  +G
Sbjct: 511 LPDTVLYHSLLDGLARNG 528



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 8/230 (3%)

Query: 48  YNILIKGLCKAGRLRTARWILKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           Y ++ + L   G++ T   +   LG   G+  +  TY   +    +    +L  E    M
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           +R+GY  D F Y  V+    K G L +A + + Q+   GV+L++++Y+ +I+  CK  ++
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124

Query: 167 EAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           + A  +   M   G  C  D  T   L+ GLC    +  A +  EYM K G + N+ +Y+
Sbjct: 125 DDALEIFKTMSSGG-GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYS 183

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
            ++D L K G++D A  ++E M     V D   Y+S V  LCKA R+  A
Sbjct: 184 TLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEA 233



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 10/306 (3%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI---LKE 70
           N M+  LC++   D A + F  +      P    +N LI  +CK+ RL     +   +K 
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKS 329

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + +    PN  TY  ++    + ++     E+++ M   G + D   Y  ++    K+G+
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGK 389

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L  A D +E+M  +GV  D  +  +++N   K GK++ A   L+ M+ +G   D  T+  
Sbjct: 390 LDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNT 449

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           L+DGLCKAG I  A   L  M       ++ +Y  I+  L + G+   A  +F+ M    
Sbjct: 450 LLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRG 509

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            + D+  Y S++  L +      A +LL + L     ++    K V+DGL  +G   +A 
Sbjct: 510 VLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVM---HKMVLDGLCKAGKAEDAC 566

Query: 307 KIQSKI 312
           ++  ++
Sbjct: 567 EVVERM 572



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 3/234 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T++ +++GLCK    D A  +   + K G  P+  T   ++  L KAG++  A 
Sbjct: 370 LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYAL 429

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+ +   G  P+ +TY T++    +  +    +  L+ M     T D F Y  +I A 
Sbjct: 430 SHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITAL 489

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+   A    ++MV  GV  D V Y++L++   + G LE   L L+ ++    + D 
Sbjct: 490 CRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG-LED--LALELLKTSLCKPDF 546

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             H +++DGLCKAG  + A   +E M   GF ++   Y  +V  L K GK+D A
Sbjct: 547 VMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKA 600



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 17/198 (8%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  F  +GR K            G Q  + +YN  ++   K    + AY    +M+++
Sbjct: 20  TIVRLFDWLGRQK------------GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRR 67

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G+  D +T++I++ GLCKAG +  A+  L  + + G   N+  Y+ ++D   K  ++D A
Sbjct: 68  GYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDA 127

Query: 240 INVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           + +F++M      V D  T++S++  LC  +R+  A  L     K+G      +   ++D
Sbjct: 128 LEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLD 187

Query: 295 GLRHSGCRREAKKIQSKI 312
           GL  +G   EA ++  ++
Sbjct: 188 GLCKAGRLDEACRLWEEM 205



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 3/169 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N +L+GLCK    D A+     +      P++ +Y I+I  LC++G+   A  
Sbjct: 441 TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHA 500

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           I +E+   G  P+ + Y +++    RN    L LE+L     K    D   +  V+    
Sbjct: 501 IFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKP---DFVMHKMVLDGLC 557

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           K G+ ++A + +E+M   G   D  +Y ++++   K GK++ A  L+D+
Sbjct: 558 KAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDD 606



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   ++ I++  LC++     A  +F+ + K G +P+ V Y+ L+ GL + G 
Sbjct: 470 MVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL 529

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +LK    S   P+ + +  ++    +  K +   E++  M   G+  D F Y +
Sbjct: 530 EDLALELLKT---SLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYIS 586

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           V++   K+G++ +A     Q+V D  +
Sbjct: 587 VVSGLRKLGKVDKA----RQLVDDASE 609


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 164/350 (46%), Gaps = 43/350 (12%)

Query: 13  FNIMLNGLCKNRYTD-----------------------------------NALRMFRGLQ 37
           +  ++N LCKN YT+                                   +AL++F  + 
Sbjct: 198 YRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMS 257

Query: 38  KHGF-VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96
           + G   P  V+Y+ILI GLC+ GRL  A  +  ++G+ G  P+  TYT ++K        
Sbjct: 258 REGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLI 317

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
                +   M  +G   +   Y  +I    + G+++EA     +MV DG+   +++YN L
Sbjct: 318 DKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNAL 377

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           IN YCK+G++  A+ LL  MEK+  + +  T   L++GLC+ G    A   L+ M   G 
Sbjct: 378 INGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGL 437

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASK 272
             ++ +YN ++D L ++G ++ A  +  SM       D  T++++++  CK  +   AS 
Sbjct: 438 SPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASA 497

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS---KIRMAKISH 319
            L   L+ G+ + +     ++DG+ + G  R+A  I     K+RM    H
Sbjct: 498 FLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPH 547



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 154/323 (47%), Gaps = 6/323 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+ ++++GLC++   + A  + R + K G  P ++TYN LI G CK GR
Sbjct: 327 MIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGR 386

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +L  +      PN  T+  +M+  C   + YK  + +L  M   G + D   Y 
Sbjct: 387 VVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYK-AVHLLKRMLDNGLSPDIVSYN 445

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    + G +  A   +  M +  ++ D +++  +IN +CK+GK + A   L  M ++
Sbjct: 446 VLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRK 505

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D+ T T LIDG+C  G  + A   LE + K+   +   + N I+D L K  K+   
Sbjct: 506 GISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEE 565

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + +   +     V    TY+++V  L ++  +  + ++L     SG          +++G
Sbjct: 566 LAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIING 625

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
           L   G   EA+K+ S ++ + +S
Sbjct: 626 LCQFGRVEEAEKLLSAMQDSGVS 648



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 144/327 (44%), Gaps = 41/327 (12%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +L G C+     +AL++F  + + G   P  V+Y+ILI GLC+ GRL  A  +  ++G+ 
Sbjct: 236 LLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK 295

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P+  TYT ++K             +   M  +G   +   Y  +I    + G+++EA
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEA 355

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--------------- 179
                +MV DG+   +++YN LIN YCK+G++  A+ LL  MEK+               
Sbjct: 356 NGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEG 415

Query: 180 --------------------GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
                               G   D  ++ +LIDGLC+ G++  A   L  MN    + +
Sbjct: 416 LCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPD 475

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              +  I++   K GK D A      M  K    D  T ++++  +C   +   A  +L 
Sbjct: 476 CLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILE 535

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + +K  +     +   ++D L   GC+
Sbjct: 536 TLVKMRMLTTPHSLNVILDML-SKGCK 561



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++GL ++     + RM   ++  G +P +  Y I+I GLC+ GR+  A 
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAE 636

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  + DSG +PN +TYT ++K    N K    LE + AM  +GY  +   Y +++  F
Sbjct: 637 KLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGF 696

Query: 126 VKIGR---------LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           V   +         +KE    +EQ+      L I     L+   CKEG+ + +  L+  +
Sbjct: 697 VLSQKGIRETDPECIKELISVVEQLGGSTSGLCIF----LVTRLCKEGRTDESNGLVQTI 752

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            K G   +K    I+     K  + K   L +  + K GF  + +++  ++  L K+G  
Sbjct: 753 LKSGVFLEKAIDIIMESYCSKKKHTKCVEL-ITLVLKSGFVPSFKSFCLVIQGLKKEGDT 811

Query: 237 DHA 239
           + A
Sbjct: 812 ERA 814



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 142/351 (40%), Gaps = 51/351 (14%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P   TF  ++N  CK    D A      + + G   + VT   LI G+C  G+ R A
Sbjct: 471 DLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDA 530

Query: 65  RWILKEL-----------------------------------GDSGHAPNAITYTTIMKC 89
            +IL+ L                                      G  P+ +TYTT++  
Sbjct: 531 LFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDG 590

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             R+        +L  MK  G   + + Y  +I    + GR++EA   +  M   GV  +
Sbjct: 591 LIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPN 650

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR-LHL 208
            V+Y  ++  Y   GKL+ A   +  M ++G+E +   ++ L+ G   +   KG R    
Sbjct: 651 HVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQ--KGIRETDP 708

Query: 209 EYMNKI--------GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS---M 257
           E + ++        G  S L  +  +V RL K+G+ D +  + +++     F   +   +
Sbjct: 709 ECIKELISVVEQLGGSTSGLCIF--LVTRLCKEGRTDESNGLVQTILKSGVFLEKAIDII 766

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           + + C  K+     +L+   LKSG      +   V+ GL+  G    A+++
Sbjct: 767 MESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERAREL 817



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 5/178 (2%)

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           +M  DG  + ++ Y T++N  CK G  EAA + + ++ K GF  D +  T L+ G C+  
Sbjct: 185 RMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGL 244

Query: 200 NIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTY 254
           N++ A    + M++ G    N  +Y+ ++  L + G+++ A  + + M  K     + TY
Sbjct: 245 NLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTY 304

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           + ++  LC    +  A  L    +  G +        ++DGL   G   EA  +  K+
Sbjct: 305 TVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKM 362


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 152/305 (49%), Gaps = 21/305 (6%)

Query: 11  ATFNIMLNGLCKNRYTDNALR--MFRGLQKHGFVPELVT-------------YNILIKGL 55
            T NI++N  C ++   N L   +F  + K G+ P ++T             Y  LI GL
Sbjct: 96  VTLNILIN--CFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGL 153

Query: 56  CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
           CK G+ R A  +L+ +      PN + Y TI+    + +      ++ S M  +G + D 
Sbjct: 154 CKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDV 213

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  +I+ F  +G+LK+A D   +M+ + ++ D+ ++N L++ +CK+GK++    +   
Sbjct: 214 VTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAM 273

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M KQG + +  T+  L+DG C    +  A      M + G + + ++YN +++   K  K
Sbjct: 274 MMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKK 333

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           +D A+N+F+ M     + +  TY+S++  LCK+ ++  A KL+      GV        +
Sbjct: 334 VDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSS 393

Query: 292 VVDGL 296
           ++D L
Sbjct: 394 ILDAL 398



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 144/291 (49%), Gaps = 13/291 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++ +CK +  + A  ++  +   G  P++VTY+ LI G    G+L+ A 
Sbjct: 174 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAI 233

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+  T+  ++    ++ K K G  + + M ++G   +   YC+++  +
Sbjct: 234 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 293

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             + ++ +A      M   GV  D  SYN +IN +CK  K++ A  L  +M  +    + 
Sbjct: 294 CLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNV 353

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----- 240
            T+T LIDGLCK+G I  A   ++ M+  G   ++  Y+ I+D L K+ ++D AI     
Sbjct: 354 VTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTK 413

Query: 241 ---NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
               VFE + VK    D + Y+ M+   C  K L + +  LLS ++   RI
Sbjct: 414 LKDQVFEDLFVKGYNLDVYAYTVMIQGFC-VKGLFNEALALLSKMEDNGRI 463



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 132/268 (49%), Gaps = 4/268 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  ++NGLCK      AL++ R +      P +V YN +I  +CK   +  A  +  E
Sbjct: 144 VSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 203

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G +P+ +TY+ ++   F   K K  +++ + M  +    D + +  ++  F K G+
Sbjct: 204 MVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 263

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +KE       M+  G++ ++V+Y +L++ YC   ++  A  + + M + G   D  ++ I
Sbjct: 264 MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNI 323

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +I+G CK   +  A    + M+      N+  Y  ++D L K GKI +A+ + + M    
Sbjct: 324 MINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRG 383

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
              D  TYSS++  LCK  ++  A  LL
Sbjct: 384 VPPDIITYSSILDALCKNHQVDKAIALL 411



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 141/294 (47%), Gaps = 12/294 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ +++G        +A+ +F  +      P++ T+NIL+ G CK G+
Sbjct: 204 MVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 263

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++  + +   +   G  PN +TY ++M      ++      I + M + G   D   Y  
Sbjct: 264 MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNI 323

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F KI ++ EA +  ++M    +  ++V+Y +LI+  CK GK+  A  L+DEM  +G
Sbjct: 324 MINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRG 383

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKI-------GFDSNLEAYNCIVDRLGK 232
              D  T++ ++D LCK   + K   L  +  +++       G++ ++ AY  ++     
Sbjct: 384 VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCV 443

Query: 233 DGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            G  + A+ +   ME    + D+ TY  ++ +L K      A KLL   +  G+
Sbjct: 444 KGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 497



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 111/262 (42%), Gaps = 29/262 (11%)

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + L  S      + Y TI+K    N ++ L       + +K  T   F +  ++ + VK
Sbjct: 17  FQTLNSSFQQIYTLNYITIIK----NDEHNLVSSFNRLLHQKNPTPPIFEFGKILGSLVK 72

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           I     A     QM   G+  ++V+ N LIN + + G+   ++ +   + K+G++ +  T
Sbjct: 73  INCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVIT 132

Query: 188 HTIL-------------IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            T L             I+GLCK G  + A   L  ++      N+  YN I+D + K  
Sbjct: 133 LTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVK 192

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA----SKLLLSCLKSGVRILK 286
            ++ A +++  M  +    D  TYS+++       +L  A    +K++L  +K  V    
Sbjct: 193 LVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTF- 251

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
                +VDG    G  +E K +
Sbjct: 252 ---NILVDGFCKDGKMKEGKTV 270


>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
          Length = 800

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 138/280 (49%), Gaps = 6/280 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P  AT+N++++GLCK     +AL++F  +   G  P + T+ IL+  +C AG+
Sbjct: 202 MVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQ 261

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF-GYC 119
           L+ A  +L  + D G  P+ +TY   +    +  +    +E L A++  G    G  GY 
Sbjct: 262 LKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYS 321

Query: 120 TVIAAFVKIGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            +I      GR +E    YME +    V  DIV Y  +I    + G+   A+   DEM++
Sbjct: 322 CLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKE 381

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +GF  D + +  L+  LC AG++ GAR  +  M +     ++  Y  ++  L K+  +D 
Sbjct: 382 KGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQLVDE 441

Query: 239 AINVFESM-EV---KDSFTYSSMVHNLCKAKRLPSASKLL 274
           A+ VF+ M EV       TY+ ++  L +A RL  A  L 
Sbjct: 442 AMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLF 481



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 145/310 (46%), Gaps = 21/310 (6%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTA- 64
            P   T+N  L+GLCK    D A+     L+  G FV  L  Y+ LI GL  AGR     
Sbjct: 278 PPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGRYEEGF 337

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           +  ++ L  +  +P+ + YT +++ C    +          MK KG+T D F Y T++ A
Sbjct: 338 QCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKA 397

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G L  A   M +MV + V LDI +Y T+I   CKE  ++ A  + D M + G    
Sbjct: 398 LCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPS 457

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL--------------EAYNCIVDRL 230
             T+ +LIDGL +A  ++ AR+ L Y  ++G + +L              E    +V+ +
Sbjct: 458 VMTYNVLIDGLYRAHRLEEARM-LFYKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESM 516

Query: 231 GKDGKIDHAI----NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            + G++  A      + +S  V D  TY+++++ LCK + L  A +L       G  + +
Sbjct: 517 CQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDE 576

Query: 287 SAQKAVVDGL 296
                ++D L
Sbjct: 577 ITYGTLIDSL 586



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 130/276 (47%), Gaps = 32/276 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  M+ GLCK +  D A+++F G+ + G  P ++TYN+LI GL +A RL  AR +  ++
Sbjct: 425 TYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKM 484

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+ P+     T+     R+       E L  +               + +  + G++
Sbjct: 485 -EVGNNPSLFLRLTLGANQVRDS------ETLQKL---------------VESMCQSGQV 522

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A   +  ++  GV  D+V+YNTL+N  CK   L+ A  L  E++ +GF  D+ T+  L
Sbjct: 523 LKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTL 582

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           ID L +A     A    + +   G   ++  YN ++  L +  K+  AIN++        
Sbjct: 583 IDSLLRAHRYNDALTLFQDILHSGGTPSMPIYNSMMRSLCRMQKLSQAINLW-------- 634

Query: 252 FTYSSMVHNLCKAKRLPSAS--KLLLSCLKSGVRIL 285
           F +    +NL     + S++  K    CL   VR L
Sbjct: 635 FDHLPRKYNLLAQDEVISSARKKFEEGCLHEAVREL 670



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 111/259 (42%), Gaps = 38/259 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I   + P   T+N +LNGLCK R  D ALR+FR LQ  GF  + +TY  LI  L +A R
Sbjct: 532 IIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAHR 591

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFR---------------NRKYKLGL--EIL 103
              A  + +++  SG  P+   Y ++M+   R                RKY L    E++
Sbjct: 592 YNDALTLFQDILHSGGTPSMPIYNSMMRSLCRMQKLSQAINLWFDHLPRKYNLLAQDEVI 651

Query: 104 SAMKRKGY-------------------TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           S+ ++K                     + +   Y   +   ++ GR+++A      +   
Sbjct: 652 SSARKKFEEGCLHEAVRELIKIDQEYGSVNSCPYTIWLIGLIQAGRIEDALKIFHILEES 711

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G+ +       L    C EG L AA  ++    K+GF   +Y    L+  LC     K A
Sbjct: 712 GIDITPACCVHLSKYLCLEGNLGAAVDVMLYTLKKGFTMRRYVGNRLLCSLCIHHRRKDA 771

Query: 205 RLHLEYMNKIGFDSNLEAY 223
           +     M+ +G+D  ++AY
Sbjct: 772 QALAWRMHLVGYD--MDAY 788



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 6/157 (3%)

Query: 116 FGYCTVIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           F Y  V+   V  G  +  A     +MV  G   +  +YN LI+  CK G    A  L D
Sbjct: 176 FVYNAVLRVLVASGGAVPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFD 235

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           EM  +G   +  THTIL+  +C AG +K A   L  M   G   +   YN  +  L K G
Sbjct: 236 EMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAG 295

Query: 235 KIDHAINVFESMEVKDSFT-----YSSMVHNLCKAKR 266
           ++D AI   E++    +F      YS ++  L  A R
Sbjct: 296 RVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGR 332


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 171 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 230

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +E+   M  +  + D   Y T+I   
Sbjct: 231 ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGL 290

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D +SY TLI+  CKEG LE A+     M ++    D 
Sbjct: 291 CKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDD 350

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 351 VAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKE 410

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 411 MQ-RDGHVPSVVTYNV 425



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      AL +F  + K G  P +V++N L+ G  + G L     +   + 
Sbjct: 143 FNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 202

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 262

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A  L+DEM  +G + DK ++T LI
Sbjct: 263 LAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLI 322

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G+++ A  H + M +     +  AY  ++  L ++G+ ID    + E + V   
Sbjct: 323 DGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLR 382

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   + + SKLL    + G
Sbjct: 383 PDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 415



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 119/223 (53%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR+  A 
Sbjct: 206 VQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 265

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K++     +P+ ITY T++    +    K   +++  M+ KG   D   Y T+I   
Sbjct: 266 EVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGC 325

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L+ A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G   D 
Sbjct: 326 CKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDT 385

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
            T+T++I+  CK G++      L+ M + G   ++  YN +++
Sbjct: 386 GTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMN 428



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 133/273 (48%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NIL+   CK G +R A  +   +   G
Sbjct: 111 VLEHLMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWG 170

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 171 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 230

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 231 ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGL 290

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A+  ++ M   G   +  +Y  ++D   K+G ++ A       + E++ + D
Sbjct: 291 CKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRL-D 349

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G+R
Sbjct: 350 DVAYTALISGLCQEGRSIDAEKMLREMLSVGLR 382



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 103/194 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +      P+L+TYN LI GLCK G 
Sbjct: 236 MLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGD 295

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A+ ++ E+   G  P+ I+YTT++  C +    +   E    M ++    D   Y  
Sbjct: 296 LKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTA 355

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+G +     LL EM++ G
Sbjct: 356 LISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 415

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 416 HVPSVVTYNVLMNG 429



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 139/300 (46%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      KE+ 
Sbjct: 73  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEIL 132

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +    ++ L +  A+ + G       + T++  ++++G L 
Sbjct: 133 ECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLD 192

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM  +G   +  T T LI
Sbjct: 193 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 252

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 253 DGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLK 312

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  +Y++++   CK   L +A +     ++  +R+   A  A++ GL   G   +A+K+
Sbjct: 313 PDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKM 372


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 157/315 (49%), Gaps = 11/315 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI+L  LC     D A+ +F  L++    P+ +TY+ L+ GL K  RL  A 
Sbjct: 154 IAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHAL 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYCTVIAA 124
            +L E+  S   P+ + Y  ++  CF+  +++  + +   + K  G   +   Y  ++  
Sbjct: 214 DLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR KE  +  E+MV + +Q D+++Y  LI+  C+ G ++ A  +  E+ K G   D
Sbjct: 274 LCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVID 333

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS--NLEAYNCIVDRLGKDGKIDHAINV 242
              +  L+ G C+AG ++ A    ++ +  GF    NL  YN ++  L   G +D AI +
Sbjct: 334 AAMYNSLVKGFCQAGRVQEA---WKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIEL 390

Query: 243 FESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           ++ +E     + D+ T+ +++H LC+      A  +      SG ++   +  ++++GL 
Sbjct: 391 WDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLC 450

Query: 298 HSGCRREAKKIQSKI 312
           + G   +A K+  K+
Sbjct: 451 NVGRLVDAVKVYEKM 465



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 139/309 (44%), Gaps = 39/309 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   T+ I+++GLC++   D A R++  + K G V +   YN L+KG C+AGR
Sbjct: 290 MVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGR 349

Query: 61  ------------------LRTARWILKELGDSGHA-----------------PNAITYTT 85
                             LRT   ++K L DSG                   P+ +T+ T
Sbjct: 350 VQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGT 409

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    +N        I    +  G   D F Y ++I     +GRL +A    E+M  DG
Sbjct: 410 LIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG 469

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            + +   YN LI+ +C+  +   A  +  +M   G      T+  LIDGLCKA   + A 
Sbjct: 470 CKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEAS 529

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
                M + GF  ++  Y  ++  L  D KID A+++++ +  K    D   ++ ++H L
Sbjct: 530 SVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGL 589

Query: 262 CKAKRLPSA 270
           C A ++  A
Sbjct: 590 CSAGKVDEA 598



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 117/236 (49%), Gaps = 1/236 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +++ M+NGLC      +A++++  + K G  P    YN LI G C+  R   A  I  ++
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM 500

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D+G +P  ITY T++    +  KY+    +   M   G+T D   Y ++I       ++
Sbjct: 501 ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKI 560

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL-EAAYLLLDEMEKQGFECDKYTHTI 190
            +A    +Q++  G+++D++ +N LI+  C  GK+ EA ++  D  EK+    +  T+  
Sbjct: 561 DDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNT 620

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           L+DGL + G I  A      + + G + ++ +YN  +  L    +I   I + + +
Sbjct: 621 LMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEV 676



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 3/231 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P +  +N +++G C+   T +A+R++  +  +G  P ++TYN LI GLCKA + + A  +
Sbjct: 472 PNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSV 531

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+ ++G  P+  TY ++++  F ++K    L I   +  KG   D   +  +I     
Sbjct: 532 AREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCS 591

Query: 128 IGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            G++ EA      M        ++V+YNTL++   + G ++ A  L   + + G E D  
Sbjct: 592 AGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDII 651

Query: 187 THTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           ++   I GLC    I +G +L  E +++ G    +  +N +V  + K G I
Sbjct: 652 SYNTRIKGLCSCDRIHEGIQLLDEVLSR-GIIPTVITWNILVRAVIKYGPI 701



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 1/197 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +++GLCK      A  + R + ++GF P++ TY  LI+GL    ++  A  
Sbjct: 506 SPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALS 565

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-RKGYTFDGFGYCTVIAAF 125
           I K++   G   + + +  ++       K    L + S MK +K    +   Y T++   
Sbjct: 566 IWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGL 625

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + +A      +  DG++ DI+SYNT I   C   ++     LLDE+  +G     
Sbjct: 626 YETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTV 685

Query: 186 YTHTILIDGLCKAGNIK 202
            T  IL+  + K G I+
Sbjct: 686 ITWNILVRAVIKYGPIQ 702



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   T+  ++ GL  ++  D+AL +++ +   G   +++ +NILI GLC AG+
Sbjct: 535 MVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGK 594

Query: 61  LRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +  ++ +  +  PN +TY T+M   +          + +++   G   D   Y 
Sbjct: 595 VDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYN 654

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
           T I       R+ E    ++++++ G+   ++++N L+    K G ++
Sbjct: 655 TRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T N++L  L K +  D     F+G+   G  P++ T+NIL+  LC+ G+ + A 
Sbjct: 136 LNPSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAG 195

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++L+++ +SG  P A+TY T++    +  +YK   +++  M  KG   D   Y   I   
Sbjct: 196 FLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNL 255

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R  +    +++M  + V  + ++YNTLI+ + +EGK+E A  + DEM       + 
Sbjct: 256 CRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNS 315

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G C  GNI  A   ++ M   G   N   Y  +++ L K+ +     ++ E 
Sbjct: 316 ITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILER 375

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M +        +Y++M+  LCK   L  A +LL   LK  V         +++G    G 
Sbjct: 376 MRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGK 435

Query: 302 RREAKKIQSKI 312
              AK+I  K+
Sbjct: 436 INNAKEIMCKM 446



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 140/286 (48%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  ATFNI+LN LC+     NA  + R +++ G  P  VTYN L+   CK GR
Sbjct: 166 MLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGR 225

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  ++  +   G   +  TY   +    R+ +   G  +L  M+R     +   Y T
Sbjct: 226 YKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNT 285

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ FV+ G+++ AT   ++M    +  + ++YNTLI  +C  G +  A  L+D M   G
Sbjct: 286 LISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHG 345

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++ T+  L++GL K          LE M   G   +  +Y  ++D L K+G ++ A+
Sbjct: 346 LRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAV 405

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + M       D  T+S +++   +  ++ +A +++    K+G+
Sbjct: 406 QLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGL 451



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 6/284 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P + T+N ++ G C       ALR+   +  HG  P  VTY  L+ GL K       
Sbjct: 310 NLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMV 369

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             IL+ +   G   + I+YT ++    +N   +  +++L  M +     D   +  +I  
Sbjct: 370 SSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLING 429

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F ++G++  A + M +M   G+  + + Y+TLI  YCK G L+ A      M   G   D
Sbjct: 430 FFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVAD 489

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +T  +L+   C+ G ++ A   + +M+++G D N   ++CI++  G  G    A +VF+
Sbjct: 490 HFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFD 549

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLL--LSCLKSGV 282
            M         FTY  ++  LC    +  A K    L C+ + V
Sbjct: 550 KMNSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNAV 593



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 148/317 (46%), Gaps = 4/317 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M+  D+ P T  FN++++   +   T     +   ++       L TYNIL+ G  K   
Sbjct: 692  MLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHA 751

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +     + K++   G  P+  ++ +++    +++ + + ++IL  +  +G+  D F +  
Sbjct: 752  MARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNM 811

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I  F +   +K+A + ++QM    V  ++ +YN L N   +      A+ +L  + + G
Sbjct: 812  LITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESG 871

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                   +  LI+G+C+ GNIKGA    + M  +G  S+  A + IV  L    KI++AI
Sbjct: 872  SVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAI 931

Query: 241  NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             V + M     +    T+++++H  CK   +  A +L        V++   A   ++ GL
Sbjct: 932  WVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGL 991

Query: 297  RHSGCRREAKKIQSKIR 313
              +G    A K+  +++
Sbjct: 992  CANGDIEAAFKLYEEMK 1008



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 139/317 (43%), Gaps = 11/317 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELVTYNILIKGLCKAG 59
           M+  D  P   T+  ++ GLCK      AL +  + ++K    P    Y  L+ GL K G
Sbjct: 621 MVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHG 680

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
             R A +I +E+ +    P+ + +  I+    R  K     +ILS MK K   F+   Y 
Sbjct: 681 HARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYN 740

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++  + K   +       + M+  G   D  S+++LI  YC+    + A  +L  +  +
Sbjct: 741 ILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLE 800

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D++T  +LI   C+   +K A   ++ MN+     N++ YN + + L +      A
Sbjct: 801 GHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKA 860

Query: 240 INV----FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             V     ES  V  +  Y ++++ +C+   +  A KL       G+     A  A+V G
Sbjct: 861 HRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRG 920

Query: 296 LRHSGCRREAKKIQSKI 312
           L +S      KKI++ I
Sbjct: 921 LANS------KKIENAI 931



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 143/311 (45%), Gaps = 5/311 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN  L   C++    +A+ +   +  + F+P+  TY  LI GLCK G++  A  +  +  
Sbjct: 598 FNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAI 657

Query: 73  DSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           + G  +PN   YT+++    ++   +  L I   M  K    D   +  +I  + + G+ 
Sbjct: 658 EKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKT 717

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +  D +  M +  +  ++ +YN L++ Y K   +   ++L  +M + GF  DK++   L
Sbjct: 718 SKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSL 777

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I G C++ +   A   L ++   G   +   +N ++ +  +  ++  A  + + M     
Sbjct: 778 ILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMV 837

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + +  TY+++ + L +      A ++L   L+SG          +++G+   G  + A K
Sbjct: 838 IPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMK 897

Query: 308 IQSKIRMAKIS 318
           +Q +++   IS
Sbjct: 898 LQDEMKTLGIS 908



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 113/286 (39%), Gaps = 36/286 (12%)

Query: 1   MICGDLTPCTATFNIMLNGL-----------------------------------CKNRY 25
           M+   + P   TF++++NG                                    CK  Y
Sbjct: 411 MLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGY 470

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
              AL  +  +   G V +  T N+L+   C+ G+L  A + +  +   G  PN++T+  
Sbjct: 471 LKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDC 530

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           I+     +        +   M   G+    F Y  ++      G + EA  +  ++    
Sbjct: 531 IINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIP 590

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA- 204
             +D V +NT +   C+ G L  A  L++EM    F  D +T+T LI GLCK G I  A 
Sbjct: 591 NAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAAL 650

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
            L  + + K     N   Y  +VD L K G    A+ +FE M  KD
Sbjct: 651 LLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKD 696



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 121/278 (43%), Gaps = 4/278 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI     P   +++ ++ G C+++  D A+++ R +   G V +  T+N+LI   C+   
Sbjct: 762  MIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNE 821

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            ++ A  ++K++      PN  TY  +     R   +     +L  +   G       Y T
Sbjct: 822  MKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYIT 881

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I    ++G +K A    ++M T G+    V+ + ++       K+E A  +LD M +  
Sbjct: 882  LINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQ 941

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  T T L+   CK  N+  A      M       ++ AYN ++  L  +G I+ A 
Sbjct: 942  IIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAF 1001

Query: 241  NVFESMEVKDSFTYSS----MVHNLCKAKRLPSASKLL 274
             ++E M+ +D +  +S    ++ + C       + KLL
Sbjct: 1002 KLYEEMKQRDLWPNTSIYIVLIDSFCAGNYQIESEKLL 1039



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 6/251 (2%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            TFN+++   C+      A  + + + +   +P + TYN L  GL +      A  +L+ L
Sbjct: 808  TFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVL 867

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +SG  P    Y T++    R    K  +++   MK  G +        ++       ++
Sbjct: 868  LESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKI 927

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            + A   ++ M+   +   + ++ TL+++YCKE  +  A  L   ME    + D   + +L
Sbjct: 928  ENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVL 987

Query: 192  IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG------KDGKIDHAINVFES 245
            I GLC  G+I+ A    E M +     N   Y  ++D         +  K+   I   E 
Sbjct: 988  ISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFCAGNYQIESEKLLRDIQDREL 1047

Query: 246  MEVKDSFTYSS 256
            M +   F YSS
Sbjct: 1048 MRLNQQFCYSS 1058



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 5/308 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T N+++   C+    + A      + + G  P  VT++ +I G   +G    A  +  ++
Sbjct: 492 TCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKM 551

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              GH P+  TY  ++K           L+    ++      D   + T + +  + G L
Sbjct: 552 NSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNL 611

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE-MEKQGFECDKYTHTI 190
            +A   + +MVT+    D  +Y  LI   CK+GK+ AA LL  + +EK     +   +T 
Sbjct: 612 SDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTS 671

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           L+DGL K G+ + A    E M     + +  A+N I+D+  + GK     ++  +M+ K 
Sbjct: 672 LVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKN 731

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              +  TY+ ++H   K   +     L    ++ G    K +  +++ G   S     A 
Sbjct: 732 LCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAI 791

Query: 307 KIQSKIRM 314
           KI   I +
Sbjct: 792 KILRWITL 799



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 117/282 (41%), Gaps = 41/282 (14%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N   +  +++ C RNR     ++    M  +G     +    V+ + VK  ++     + 
Sbjct: 104 NPAVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWSFF 163

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           + M+  G+  D+ ++N L+N  C+ GK + A  LL +ME+ G      T+  L++  CK 
Sbjct: 164 KGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKK 223

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD------------------------- 233
           G  K A   ++ M   G   ++  YN  +D L +D                         
Sbjct: 224 GRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITY 283

Query: 234 ----------GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
                     GKI+ A  VF+ M     + +S TY++++   C    +  A +L+   + 
Sbjct: 284 NTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVS 343

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM--AKISH 319
            G+R  +    A+++GL  +        I  ++RM   ++SH
Sbjct: 344 HGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSH 385


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       AL     L   GF    V+Y  LI G+CK G  R A  +
Sbjct: 127 PDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKL 186

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      PN   Y+TI+    + +       + S M  KG + D   Y T+I  F  
Sbjct: 187 LRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCI 246

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+LKEA   + +MV   +  ++ +YN L++  CKEGK++ A  +L  M K   + D  T
Sbjct: 247 EGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+DG      +K A+     M+ +G   ++  Y  +++   K+  +D A+N+F+ M 
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K+      TYSS++  LCK+ R+P    L+      G         +++DGL  +G   
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLD 426

Query: 304 EAKKIQSKIRMAKI 317
            A  + +K++  +I
Sbjct: 427 RAIALFNKMKDQEI 440



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 152/317 (47%), Gaps = 5/317 (1%)

Query: 2   ICGDLT-PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           I G LT P    ++ +++ LCK +    A  +F  +   G   ++VTY+ LI G C  G+
Sbjct: 190 IDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK 249

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +L E+      PN  TY  ++    +  K K    +L+ M +     D   Y T
Sbjct: 250 LKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYST 309

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +  +  +K+A      M   GV  D+ +Y  LIN +CK   ++ A  L  EM ++ 
Sbjct: 310 LMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN 369

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T++ LIDGLCK+G I      ++ M   G  +++  Y+ ++D L K+G +D AI
Sbjct: 370 MVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAI 429

Query: 241 NVFESM---EVKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M   E++ + FT++ ++  LCK  RL  A ++    L  G  +       +++G 
Sbjct: 430 ALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGH 489

Query: 297 RHSGCRREAKKIQSKIR 313
              G   EA  + SK+ 
Sbjct: 490 CKQGLLEEALTMLSKME 506



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 114/202 (56%), Gaps = 1/202 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+ I++NG CKN+  D AL +F+ + +   VP +VTY+ LI GLCK+GR+    
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVW 394

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ D G   + ITY++++    +N      + + + MK +    + F +  ++   
Sbjct: 395 DLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGL 454

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRLK+A +  + ++T G  L++ +YN +IN +CK+G LE A  +L +ME  G   + 
Sbjct: 455 CKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNA 514

Query: 186 YT-HTILIDGLCKAGNIKGARL 206
           +T  TI+I    K  N K  +L
Sbjct: 515 FTFETIIIALFKKDENDKAEKL 536



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI+++ LCK      A  +   + K    P+++TY+ L+ G      
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ +   +   G  P+  TYT ++    +N+     L +   M +K        Y +
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+    D +++M   G   D+++Y++LI+  CK G L+ A  L ++M+ Q 
Sbjct: 380 LIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQE 439

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T TIL+DGLCK G +K A+   + +   G+  N+  YN +++   K G ++ A+
Sbjct: 440 IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME    + ++FT+ +++  L K      A KLL   +  G+
Sbjct: 500 TMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 134/299 (44%), Gaps = 39/299 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C   TP    FN +L+   K ++   A+ +   L+  G  P+L+T NILI   C  G+
Sbjct: 50  MLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQ 109

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                               IT+               G  +L+ + ++GY  D     T
Sbjct: 110 --------------------ITF---------------GFSVLAKILKRGYPPDTVTLNT 134

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G++K+A  + ++++  G QL+ VSY TLIN  CK G    A  LL +++ + 
Sbjct: 135 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRL 194

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +   ++ +ID LCK   +  A      M   G  +++  Y+ ++     +GK+  AI
Sbjct: 195 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +   M +K    + +TY+ +V  LCK  ++  A  +L   LK+ V+        ++DG
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDG 313


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 140/270 (51%), Gaps = 11/270 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR----- 62
           P  ATFN +++ LCK  +     ++   + K+G  P L T+NI I+GLC+ G L      
Sbjct: 214 PHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSK 273

Query: 63  --TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A   L ++ + G  P+  TY TI+    +  K +    IL   K KG+  D F YC+
Sbjct: 274 VVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCS 333

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G +  A    E+ +  G++  IV YNTLI    ++G +  A  L+++M K+G
Sbjct: 334 LIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEG 393

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T+ ++I+GLCK G +  A   L      G+  ++  +N ++D   K  K+D+AI
Sbjct: 394 MSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAI 453

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKR 266
            + +SM       D  TY+S+++ LCKA +
Sbjct: 454 GILDSMWSHGVTPDVITYNSILNGLCKAAK 483



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 153/334 (45%), Gaps = 37/334 (11%)

Query: 6   LTPCTATFNIMLNGLCK---------------------NRYT--------------DNAL 30
           ++P   T+N+++NGLCK                     + +T              DNA+
Sbjct: 394 MSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAI 453

Query: 31  RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
            +   +  HG  P+++TYN ++ GLCKA +        K + + G  PN ITY  +++  
Sbjct: 454 GILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESL 513

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLD 149
            + RK    L++L  ++ +G   D   + TVI+ F   G L EA     +M     +   
Sbjct: 514 CKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHT 573

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           + +YN +IN + ++  ++ A  L  EM  +G + D YT+ ++IDG CK GN+      L 
Sbjct: 574 VATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLL 633

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPS 269
              +IGF  +L  +  +++ L    ++  A+ +   M V+      ++V      K+  +
Sbjct: 634 KEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLM-VRTGVVPEAVVTIFDADKKAVA 692

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           A K+++  L     I   A + + DG+R+   ++
Sbjct: 693 APKIIVEDLLKKSHITYYAYELLYDGIRNKKLQK 726



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 137/278 (49%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++ G  K     +A R+ +  +  GFVP+  TY  LI G+C+ G 
Sbjct: 284 MVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGD 343

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +E    G  P+ + Y T++K   +       L++++ M ++G + D + Y  
Sbjct: 344 IDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNL 403

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    K+G + +A + +   +  G   DI ++NTLI+ YCK  K++ A  +LD M   G
Sbjct: 404 VINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHG 463

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  +++GLCKA   +      + + + G   N+  YN +++ L K  K+  A+
Sbjct: 464 VTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEAL 523

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++ E +     + D  ++ +++   C    L  A +L 
Sbjct: 524 DLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLF 561



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 142/301 (47%), Gaps = 11/301 (3%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+ +F  +  +   P + +YN ++  L + G    A  +   +   G AP+  T+T  +K
Sbjct: 95  AVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIK 154

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R ++    L +L+ M  +G   +   YCTVI+ F +     EA +   +M+  G+  
Sbjct: 155 SFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFP 214

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
            I ++N L+++ CK+G L+    LL+++ K G   + +T  I I GLC+ G ++GA   +
Sbjct: 215 HIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKV 274

Query: 209 ----EYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
                Y++K+   G + +   YN I+    K GKI  A  + +  +    V D FTY S+
Sbjct: 275 VEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSL 334

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           +  +C+   +  A  L    L  G++        ++ GL   G   +A ++ + +    +
Sbjct: 335 IIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGM 394

Query: 318 S 318
           S
Sbjct: 395 S 395



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +++G  +  Y   A  +F  + + G  P + T+N L+  LCK G L+    +L ++  +G
Sbjct: 187 VISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNG 246

Query: 76  HAPNAITYTTIMKCCFR-------NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
             PN  T+   ++   R       N K       L  M  KG   D F Y T+I  + K+
Sbjct: 247 VCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKV 306

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G++++A+  ++     G   D  +Y +LI   C++G ++ A  L +E   +G +     +
Sbjct: 307 GKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLY 366

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
             LI GL + G +  A   +  M+K G   ++  YN +++ L K G +  A N+  +   
Sbjct: 367 NTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIA 426

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           K    D FT+++++   CK  ++ +A  +L S    GV        ++++GL
Sbjct: 427 KGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGL 478



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 147/320 (45%), Gaps = 46/320 (14%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N ++N L +  Y + A +++  ++  G  P++ T+ I IK  C+  R   A  +
Sbjct: 109 PSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRL 168

Query: 68  LKELGDSGHAPNAITYTTIMKCCFR-----------NRKYKLGL--------EILSAMKR 108
           L  +   G   NA+ Y T++   +            N+  +LG+        +++  + +
Sbjct: 169 LNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCK 228

Query: 109 KGYTFDG----------------FGYCTVIAAFVKIGRLK-------EATDYMEQMVTDG 145
           KG+  +G                F +   I    + G L+       EA +Y+ +MV  G
Sbjct: 229 KGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKG 288

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++ D  +YNT+I  Y K GK++ A  +L + + +GF  D++T+  LI G+C+ G+I  A 
Sbjct: 289 LEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHAL 348

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
              E     G   ++  YN ++  L + G +  A+ +   M       D +TY+ +++ L
Sbjct: 349 ALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGL 408

Query: 262 CKAKRLPSASKLLLSCLKSG 281
           CK   +  A+ LL + +  G
Sbjct: 409 CKMGCVSDANNLLNAAIAKG 428



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 4/169 (2%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y + +  + + G+++EA D  E+M     +  I SYN ++N+  + G    A+ +   M+
Sbjct: 79  YVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMK 138

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            +G   D  T TI I   C+      A   L  M   G + N   Y  ++    ++    
Sbjct: 139 HEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQV 198

Query: 238 HAINVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            A  +F  M     F    T++ ++H LCK   L    KLL   LK+GV
Sbjct: 199 EAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGV 247


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 134/271 (49%), Gaps = 7/271 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NIM++ LCK +  D A  +   +  +G  P++VTY+ L+ GLCK G+L  A  +
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  P++ T  +I+    +  K    L  L  MK +G T D   Y T++    K
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA  ++ +MV      D+ SY  +I   C+ G+   A+ +  EM K+G   D   
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DGL + G      L LE +       +   +  +VD L K GK + A  V E M 
Sbjct: 517 YHSLLDGLARNGL---EDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMA 573

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
                 D+FTY ++V  L K  ++  A +L+
Sbjct: 574 DAGFPADAFTYINVVRGLRKLGKVDKARQLV 604



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 151/337 (44%), Gaps = 24/337 (7%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   TFN +L GLC       A  +F  + K G  P +++Y+ L+ GLCKAGRL  
Sbjct: 138 GGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + +E+ +    P+ + YT+ +    +  +     +    M  KG   D   + TVI 
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 124 AFVKIGRLKEATDYM-----------------EQMVTDGVQLDIVSYNTLINLYCKEGKL 166
              K G  +EA + M                 E+M++         +NTLI+  CK  +L
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRL 317

Query: 167 EAAYLLLDEMEK-QGFECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
               LL   M+  + F C     T+ I++D LCKA  +  A+  +  M   G   ++  Y
Sbjct: 318 PDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTY 377

Query: 224 NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           + +VD L K GK+D A ++ E M       DSFT +S+++ L KA ++  A   L +   
Sbjct: 378 SALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKA 437

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            G          ++DGL  +G   EA    +K+  AK
Sbjct: 438 RGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 146/314 (46%), Gaps = 25/314 (7%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILKE 70
           T++++++G CK    D+AL +F+ +   G  VP++VT+N L+KGLC   R+  A  + + 
Sbjct: 110 TYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEY 169

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  +G  PN I+Y+T++    +  +      +   M  K    D   Y + +    K  R
Sbjct: 170 MAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANR 229

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL----------LLDEMEKQG 180
           + EA D   +MVT G + D V+++T+I + CK+G  E A            +LDE  K  
Sbjct: 230 VAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTF 289

Query: 181 FECDKYTHT-------ILIDGLCKAGNIKGARL---HLEYMNKIGFDSNLEAYNCIVDRL 230
            E     H         LI  +CK+  +    L    ++ M +     NLE YN +VD L
Sbjct: 290 EEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNL 349

Query: 231 GKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            K  ++D A  +   M       D  TYS++V  LCK  +L  A  LL    K GV    
Sbjct: 350 CKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDS 409

Query: 287 SAQKAVVDGLRHSG 300
               ++++ L  +G
Sbjct: 410 FTDASILNALSKAG 423



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 144/291 (49%), Gaps = 23/291 (7%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N  L+ L K      A   F+ +Q+ G+ P+  TY+I+++GLCKAG L  A+ +L +L
Sbjct: 40  TYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQL 99

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGR 130
            +SG   N ITY+ ++  C +  +    LEI   M   G    D   + +++       R
Sbjct: 100 RESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGER 159

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + EA    E M   G + +++SY+TL++  CK G+L+ A  L +EM ++    D   +T 
Sbjct: 160 MSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTS 219

Query: 191 LIDGLCKAGNI------------KGARLH-LEYMNKIGF----DSNLEAYNCIVDRLGKD 233
            + GLCKA  +            KG++   + +   IG         EA N +++ L + 
Sbjct: 220 FVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRS 279

Query: 234 GKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
           G +D A   FE M        +  +++++H +CK+KRLP    LL   +KS
Sbjct: 280 GMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGV-LLFQRMKS 329



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 147/324 (45%), Gaps = 24/324 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY------------ 48
           M+     P    +   + GLCK      A    R +   G   + V +            
Sbjct: 205 MVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGH 264

Query: 49  -----NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103
                N +I+ LC++G L  A    +E+    H P+A  + T++    ++++   G+ + 
Sbjct: 265 AEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLF 324

Query: 104 SAMK--RKGYTFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
             MK  ++ Y       Y  ++    K  +L EA + + +M   G+  D+V+Y+ L++  
Sbjct: 325 QRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGL 384

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           CK GKL+ A  LL+EM K+G   D +T   +++ L KAG +  A  HLE M   G   +L
Sbjct: 385 CKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDL 444

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
             YN ++D L K G+ID AI     M       D F+Y+ ++  LC++ +   A  +   
Sbjct: 445 VTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQE 504

Query: 277 CLKSGVRILKSAQKAVVDGLRHSG 300
            +K GV        +++DGL  +G
Sbjct: 505 MVKRGVLPDTVLYHSLLDGLARNG 528



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 10/306 (3%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI---LKE 70
           N M+  LC++   D A + F  +      P    +N LI  +CK+ RL     +   +K 
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKS 329

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + +    PN  TY  ++    + ++     E+++ M   G + D   Y  ++    K+G+
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGK 389

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L  A D +E+M  +GV  D  +  +++N   K GK++ A   L+ M+ +G   D  T+  
Sbjct: 390 LDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNT 449

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           L+DGLCKAG I  A   L  M       ++ +Y  I+  L + G+   A  +F+ M    
Sbjct: 450 LLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRG 509

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            + D+  Y S++  L +      A +LL + L     ++    K VVDGL  +G   +A 
Sbjct: 510 VLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVM---HKMVVDGLCKAGKAEDAC 566

Query: 307 KIQSKI 312
           ++  ++
Sbjct: 567 EVVERM 572



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 8/230 (3%)

Query: 48  YNILIKGLCKAGRLRTARWILKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           Y ++ + L   G++ T   +   LG   G+  +  TY   +    +    +L  E    M
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           +R+GY  D F Y  V+    K G L +A + + Q+   GV+L++++Y+ +I+  CK  ++
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124

Query: 167 EAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           + A  +   M   G  C  D  T   L+ GLC    +  A +  EYM K G + N+ +Y+
Sbjct: 125 DDALEIFKTMSAGG-GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYS 183

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
            ++D L K G++D A  ++E M     V D   Y+S V  LCKA R+  A
Sbjct: 184 TLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEA 233



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 3/234 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T++ +++GLCK    D A  +   + K G  P+  T   ++  L KAG++  A 
Sbjct: 370 LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYAL 429

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+ +   G  P+ +TY T++    +  +    +  L+ M     T D F Y  +I A 
Sbjct: 430 SHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITAL 489

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+   A    ++MV  GV  D V Y++L++   + G LE   L L+ ++    + D 
Sbjct: 490 CRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG-LED--LALELLKTSLCKPDF 546

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             H +++DGLCKAG  + A   +E M   GF ++   Y  +V  L K GK+D A
Sbjct: 547 VMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKA 600



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 17/198 (8%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  F  +GR K            G Q  + +YN  ++   K    + AY    +M+++
Sbjct: 20  TIVRLFDWLGRQK------------GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRR 67

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G+  D +T++I++ GLCKAG +  A+  L  + + G   N+  Y+ ++D   K  ++D A
Sbjct: 68  GYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDA 127

Query: 240 INVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           + +F++M      V D  T++S++  LC  +R+  A  L     K+G      +   ++D
Sbjct: 128 LEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLD 187

Query: 295 GLRHSGCRREAKKIQSKI 312
           GL  +G   EA ++  ++
Sbjct: 188 GLCKAGRLDEACRLWEEM 205



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 3/169 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N +L+GLCK    D A+     +      P++ +Y I+I  LC++G+   A  
Sbjct: 441 TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHA 500

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           I +E+   G  P+ + Y +++    RN    L LE+L     K    D   +  V+    
Sbjct: 501 IFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKP---DFVMHKMVVDGLC 557

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           K G+ ++A + +E+M   G   D  +Y  ++    K GK++ A  L+D+
Sbjct: 558 KAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDD 606



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    TP   ++ I++  LC++     A  +F+ + K G +P+ V Y+ L+ GL + G 
Sbjct: 470 MVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL 529

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +LK    S   P+ + +  ++    +  K +   E++  M   G+  D F Y  
Sbjct: 530 EDLALELLKT---SLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYIN 586

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           V+    K+G++ +A     Q+V D  +
Sbjct: 587 VVRGLRKLGKVDKA----RQLVDDASE 609


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 4/304 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++ LCK+R  + A+ +F  ++  G +P +VTY  LI GL   GR + A  +
Sbjct: 229 PDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGL 288

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+ + ++ ++    +  +      IL  M   G   D   Y T++  +  
Sbjct: 289 LNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCL 348

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + EA    E M++ G   D+ S++ L+N YCK  +++ A  L DEM  +G   D  +
Sbjct: 349 RMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVS 408

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI GLC+A     A    + M+  G+  NL  Y+ ++D L K G +D A+ +F +ME
Sbjct: 409 YNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAME 468

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY+ M+  +CK  +   A +L       G++         +DG+   G   
Sbjct: 469 NSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLD 528

Query: 304 EAKK 307
           EA K
Sbjct: 529 EAHK 532



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 139/273 (50%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF+ ++NG C       A+ +F  +   G+ P + +Y+I+IKGLC+ G+     
Sbjct: 157 LEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVI 216

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ +   G  P+ + Y TI+    ++R     + I   MK  G       Y ++I   
Sbjct: 217 KLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGL 276

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +GR KEA   + +M    +  D+V+++ LI++ CKEG++  A ++L  M + G E D 
Sbjct: 277 RNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDV 336

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L++G C    +  AR   E M   G   ++ +++ +V+   K  +ID A  +F+ 
Sbjct: 337 ATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDE 396

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     + D+ +Y++++  LC+A+R   A +L 
Sbjct: 397 MTHRGLIPDTVSYNTLISGLCQARRPLEAEELF 429



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 146/301 (48%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +  I++N  C+  + D    +   + K G  P ++T++ LI G C  G++  A  +   +
Sbjct: 128 SLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVM 187

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G+ PN  +Y+ I+K   R  K    +++L  MK  G   D   Y T++    K   +
Sbjct: 188 VARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLV 247

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA     +M   G+   +V+Y +LI+     G+ + A+ LL+EM+      D    ++L
Sbjct: 248 NEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVL 307

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           ID +CK G +  AR+ L+ M ++G + ++  YN +++      ++  A  VFE M     
Sbjct: 308 IDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGR 367

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + D F++S +V+  CKAKR+  A +L       G+     +   ++ GL  +    EA++
Sbjct: 368 MPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEE 427

Query: 308 I 308
           +
Sbjct: 428 L 428



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 118/247 (47%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P    F+++++ +CK      A  + + + + G  P++ TYN L+ G C    +  
Sbjct: 295 GNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVE 354

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           AR + + +   G  P+  +++ ++    + ++     ++   M  +G   D   Y T+I+
Sbjct: 355 ARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLIS 414

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              +  R  EA +  + M ++G   ++V+Y+ L++   K+G L+ A  L   ME  G + 
Sbjct: 415 GLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKP 474

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+ I+IDG+CK G  K AR     ++  G   N       +D + K G +D A   F
Sbjct: 475 DLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAF 534

Query: 244 ESMEVKD 250
             ME  D
Sbjct: 535 RQMEKDD 541



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 90/178 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   +F+I++NG CK +  D A ++F  +   G +P+ V+YN LI GLC+A R
Sbjct: 362 MISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARR 421

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K++  +G+ PN +TY+ ++ C  +       + +  AM+  G   D   Y  
Sbjct: 422 PLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNI 481

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           +I    K G+ K+A +   ++   G+Q +       I+  CK G L+ A+    +MEK
Sbjct: 482 MIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEK 539



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 4/206 (1%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           ++   P+ + +  +     R + YK  + +   M+  G + D      +I  F ++  + 
Sbjct: 84  NTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVD 143

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
                + +++  G++ ++++++TLIN +C EGK+  A  L D M  +G++ + ++++I+I
Sbjct: 144 YGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIII 203

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            GLC+ G        LE+M  +G + ++  YN IVDRL KD  ++ A+++F  M+    +
Sbjct: 204 KGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGIL 263

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
               TY+S++H L    R   A  LL
Sbjct: 264 PTVVTYTSLIHGLRNLGRWKEAFGLL 289



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 4/201 (1%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           + +A V++   K      +QM   G+  D++S   LIN +C+   ++  + +L ++ K G
Sbjct: 97  LFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLG 156

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T + LI+G C  G I  A    + M   G+  N+ +Y+ I+  L + GK    I
Sbjct: 157 LEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVI 216

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + E M+V     D   Y+++V  LCK + +  A  +      +G+        +++ GL
Sbjct: 217 KLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGL 276

Query: 297 RHSGCRREAKKIQSKIRMAKI 317
           R+ G  +EA  + ++++   I
Sbjct: 277 RNLGRWKEAFGLLNEMKGGNI 297



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 128/306 (41%), Gaps = 16/306 (5%)

Query: 24  RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 83
           R  ++AL  F  +     +P +V +  L   L +    +T   + K++  +G + + ++ 
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 84  TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
           T ++ C  R      G  +L  + + G   +   + T+I  F   G++  A +  + MV 
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVA 189

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            G + ++ SY+ +I   C+ GK      LL+ M+  G E D   +  ++D LCK   +  
Sbjct: 190 RGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNE 249

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVH 259
           A      M   G    +  Y  ++  L   G+   A  +   M+    + D   +S ++ 
Sbjct: 250 AVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLID 309

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR----EAKKI----QSK 311
            +CK   +  A  +L +  + GV        A  + L +  C R    EA+K+     SK
Sbjct: 310 IMCKEGEVSEARVILKTMTEMGVE----PDVATYNTLMNGYCLRMEVVEARKVFEVMISK 365

Query: 312 IRMAKI 317
            RM  +
Sbjct: 366 GRMPDV 371



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 33/73 (45%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NIM++G+CK     +A  +F  L   G  P        I G+CK G L  A 
Sbjct: 472 LKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAH 531

Query: 66  WILKELGDSGHAP 78
              +++     +P
Sbjct: 532 KAFRQMEKDDCSP 544


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 152/304 (50%), Gaps = 8/304 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN +L+ LCK++  + A  +F+   K  F  + V+YN+++ G C   R   A  +LKE+
Sbjct: 173 SFNTILDVLCKSKRVEMAYNLFKVF-KGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEM 231

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN  +Y T++K  FR  +     +    MK++    D   Y TVI  F   G +
Sbjct: 232 VKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEI 291

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           K A    + MV  GV   + +YN  I + CK+  ++ A ++ +EM  +G+  +  T+ ++
Sbjct: 292 KRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLV 351

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           I GLC  G ++ A   +  M   G + N++ YN ++     +G+ID A+++F+ M   D 
Sbjct: 352 IRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDC 411

Query: 252 F----TYSSMVHNLC---KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                TY+ ++  +    K+  L  A  LL+  +  G    K     V++GL  +G +  
Sbjct: 412 LPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLNGLLLTGNQGF 471

Query: 305 AKKI 308
           AK+I
Sbjct: 472 AKEI 475



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 115/236 (48%), Gaps = 5/236 (2%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P   T+ I+ +    AG+   A  +   +   G   +  ++ TI+    ++++ ++   +
Sbjct: 134 PTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNL 193

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
               K K +  D   Y  ++  +  I R  +A + +++MV  G+  ++ SYNT++  Y +
Sbjct: 194 FKVFKGK-FRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFR 252

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
            G++  A+    EM+K+  E D  T+T +I G   AG IK AR   + M K G   ++  
Sbjct: 253 AGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVAT 312

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           YN  +  L K   +D+AI +FE M VK    +S TY+ ++  LC    +  A + +
Sbjct: 313 YNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFM 368



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 44/235 (18%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL--------- 61
            ++N+M+NG C  + T+ AL M + + K G  P L +YN ++KG  +AG++         
Sbjct: 206 VSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLE 265

Query: 62  --------------------------RTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
                                     + AR +   +   G  P+  TY   ++   +   
Sbjct: 266 MKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDN 325

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
               + I   M  KGY  +   Y  VI      G ++ A ++M +M  DG + ++ +YN 
Sbjct: 326 VDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNL 385

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI---------DGLCKAGNI 201
           +I  +C EG+++ A  L  +M       +  T+ ILI         D L  AGN+
Sbjct: 386 VIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNL 440



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 10/247 (4%)

Query: 41  FVPELVTYNILIKGLCKAGRLRTARW-ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           + P+LV  N ++K L   G      + +L       H P++  +   +    R+      
Sbjct: 65  WTPQLV--NTILKRLWNDGPKALQFFNLLSHHPSYSHHPSSYDHAIDISARLRDSPSLRS 122

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           L       R G T   F    +   +   G+   A      M   G   D+ S+NT++++
Sbjct: 123 LVYRMRSARLGPTPKTFA--IIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDV 180

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CK  ++E AY L  ++ K  F  D  ++ ++++G C       A   L+ M K G   N
Sbjct: 181 LCKSKRVEMAYNLF-KVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPN 239

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
           L +YN ++    + G+I+ A + F  M+ +    D  TY++++H    A  +  A K+  
Sbjct: 240 LTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFD 299

Query: 276 SCLKSGV 282
           + +K GV
Sbjct: 300 TMVKKGV 306


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 5/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG CK    D   R+   ++K    P++ TY+ LI  LCK  ++  A 
Sbjct: 271 LRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAH 330

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  PN + +TT++    RN +  L  E    M  KG   D   Y T++  F
Sbjct: 331 RLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGF 390

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L  A + ++ M+  G++ D V+Y TLI+ +C+ G ++ A  +  EM++ G E D+
Sbjct: 391 CKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDR 450

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              + LI G+CK G +  A   L  M + G   +   Y  ++D   K G       + + 
Sbjct: 451 VGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKE 510

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG-LRHSG 300
           M+    + +  TY+ +++ LCK  ++ +A  LL + L  GV         +++G  RH+ 
Sbjct: 511 MQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHAN 570

Query: 301 CRREAKK 307
             +  K+
Sbjct: 571 ASKHYKQ 577



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 129/262 (49%), Gaps = 1/262 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    F  +++G  +N   D     ++ +   G  P++V YN L+ G CK G L  AR
Sbjct: 341 LIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAAR 400

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I+  +   G  P+ +TYTT++    R       LEI   M + G   D  G+  +I   
Sbjct: 401 NIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGM 460

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ +A   + +M+  G++ D V+Y  +++ +CK+G  +  + LL EM+  G   + 
Sbjct: 461 CKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNV 520

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID-HAINVFE 244
            T+ +L++GLCK G +K A + L+ M  +G   +   YN +++   +      H     E
Sbjct: 521 VTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANASKHYKQKPE 580

Query: 245 SMEVKDSFTYSSMVHNLCKAKR 266
              V D  +Y S+V+ L +A +
Sbjct: 581 IGIVADLASYKSLVNELYRASK 602



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            FNI++N  CK     +A ++F  + K    P +V++N LI G CK G L     +   +
Sbjct: 242 VFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHM 301

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             S   P+  TY+ ++    +  K      +   M  +G   +   + T+I    + G++
Sbjct: 302 EKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQI 361

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
               +  ++M++ G+Q DIV YNTL+N +CK G L AA  ++D M ++G   DK T+T L
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTL 421

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           IDG C+ G++  A    + M++ G + +   ++ ++  + K+G++  A      M     
Sbjct: 422 IDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGM 481

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             D  TY+ M+   CK     +  KLL
Sbjct: 482 KPDDVTYTMMMDAFCKKGDAQTGFKLL 508



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 4/238 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +N ++NG CKN     A  +  G+ + G  P+ VTY  LI G C+ G 
Sbjct: 371 MLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGD 430

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + TA  I KE+  +G   + + ++ ++    +  +       L  M R G   D   Y  
Sbjct: 431 VDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTM 490

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K G  +     +++M +DG   ++V+YN L+N  CK G+++ A +LLD M   G
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVG 550

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
              D  T+  L++G  +  N   A  H +   +IG  ++L +Y  +V+ L +  K DH
Sbjct: 551 VVPDDITYNTLLEGHHRHAN---ASKHYKQKPEIGIVADLASYKSLVNELYRASK-DH 604



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 8/217 (3%)

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           +EIL A    G+  + + +  ++  F K G + +A    +++    ++  +VS+NTLIN 
Sbjct: 229 MEILDA----GFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLING 284

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           YCK G L+  + L   MEK     D +T++ LI+ LCK   + GA      M + G   N
Sbjct: 285 YCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPN 344

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              +  ++    ++G+ID     ++ M  K    D   Y+++V+  CK   L +A  ++ 
Sbjct: 345 DVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVD 404

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             ++ G+R  K     ++DG    G    A +I+ ++
Sbjct: 405 GMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEM 441


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 151/317 (47%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C +L P    +  +++G  +    D A +M + +   G  P  +TY+ L++GLCK G+
Sbjct: 213 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 272

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LK++    H P+ ITY  I++  FR+   K    +LS M+  G + + + Y  
Sbjct: 273 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSI 332

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G  ++A+D +E+M T G++ +   Y  LI+ YC+EG +  A  + D+M K  
Sbjct: 333 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 392

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D Y +  LI GL K G ++ +  +   M + G   N   Y+ ++    K+G ++ A 
Sbjct: 393 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 452

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + M       +   Y  ++ +  K+  +   S    S L  GV +       ++  L
Sbjct: 453 QLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNL 512

Query: 297 RHSGCRREAKKIQSKIR 313
             SG    A ++ S+I 
Sbjct: 513 SSSGNMEAAFRVLSEIE 529



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 150/307 (48%), Gaps = 4/307 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N+++ GLC++   + A    + ++ +G VP+  TY  LI GLCK+ R   A+ +L 
Sbjct: 152 TVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLD 211

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  +   PN + Y  ++    R        +++  M   G   +   Y  ++    K+G
Sbjct: 212 EMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMG 271

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++  A+  ++QMV D  + D ++YN +I  + +    + A+ LL EME  G   + YT++
Sbjct: 272 QMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYS 331

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           I+I GLC++G  + A   LE M   G   N   Y  ++    ++G +  A  +F+ M   
Sbjct: 332 IMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKV 391

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             + D + Y+S++  L K  R+  ++K      + G+   +     ++ G   +G    A
Sbjct: 392 NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 451

Query: 306 KKIQSKI 312
           +++  ++
Sbjct: 452 EQLVQRM 458



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N+++ G  ++    +A R+   ++  G  P + TY+I+I GLC++G    A  +
Sbjct: 290 PDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 349

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  PNA  Y  ++    R     L  EI   M +     D + Y ++I    K
Sbjct: 350 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 409

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR++E+T Y  QM   G+  +  +Y+ LI+ Y K G LE+A  L+  M   G + +   
Sbjct: 410 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 469

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++   K+ +I+      + M   G   +   Y  ++  L   G ++ A  V   +E
Sbjct: 470 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIE 529

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D   YSS++  LCK      A  +L    K GV        A++DGL  SG   
Sbjct: 530 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 589

Query: 304 EAKKIQSKI 312
            A+ + + I
Sbjct: 590 YARNVFNSI 598



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 9/305 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P    +  +++G C+      A  +F  + K   +P+L  YN LI GL K GR
Sbjct: 353 MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGR 412

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +     ++ + G  PN  TY+ ++    +N   +   +++  M   G   +   Y  
Sbjct: 413 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID 472

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ ++ K   +++ +   + M+  GV LD   Y  LI+     G +EAA+ +L E+EK G
Sbjct: 473 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNG 532

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + ++ LI GLCK  + + A   L+ M+K G D N+  YN ++D L K G I +A 
Sbjct: 533 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 592

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           NVF S+     V +  TY+S++   CK   + +A  L    L +G+        A V  +
Sbjct: 593 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI-----TPDAFVYSV 647

Query: 297 RHSGC 301
             +GC
Sbjct: 648 LTTGC 652



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 152/317 (47%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ ++   CK R  D A ++   +++ G     VTYN+LI GLC++G 
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 167

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    K++ D G  P+  TY  ++    ++R+      +L  M       +   Y  
Sbjct: 168 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 227

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F++ G   EA   +++MV  GVQ + ++Y+ L+   CK G+++ A LLL +M +  
Sbjct: 228 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 287

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+ ++I+G  +  N K A   L  M   G   N+  Y+ ++  L + G+ + A 
Sbjct: 288 HRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 347

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ E M  K    ++F Y+ ++   C+   +  A ++     K  V        +++ GL
Sbjct: 348 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 407

Query: 297 RHSGCRREAKKIQSKIR 313
              G   E+ K  ++++
Sbjct: 408 SKVGRVEESTKYFAQMQ 424



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 141/308 (45%), Gaps = 5/308 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P    +N ++ GL K    + + + F  +Q+ G +P   TY+ LI G  K G L +A
Sbjct: 392 NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 451

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +++ + D+G  PN + Y  +++  F++   +       +M  +G   D   Y  +I  
Sbjct: 452 EQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHN 511

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G ++ A   + ++  +G   D+  Y++LI+  CK    E A+ +LDEM K+G + +
Sbjct: 512 LSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPN 571

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              +  LIDGLCK+G+I  AR     +   G   N   Y  ++D   K G I +A  ++ 
Sbjct: 572 IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYN 631

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       D+F YS +      A  L  A  L+      G   + S    +VDG    G
Sbjct: 632 EMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNN-LVDGFCKRG 690

Query: 301 CRREAKKI 308
             +E  K+
Sbjct: 691 KMQETLKL 698



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 131/275 (47%), Gaps = 6/275 (2%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           ++L+    K+GR++ A  ++  + D G AP+      ++K   R     L  ++   M  
Sbjct: 51  DVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVG 110

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G + D + Y T+I A+ K+     A   + +M   G  L+ V+YN LI   C+ G +E 
Sbjct: 111 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 170

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A+    +ME  G   D +T+  LI+GLCK+     A+  L+ M+      N+  Y  ++D
Sbjct: 171 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 230

Query: 229 RLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
              ++G  D A  + + M       +  TY ++V  LCK  ++  AS LL   ++   R 
Sbjct: 231 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 290

Query: 285 LKSAQKAVVDG-LRHSGCRREAKKIQSKIRMAKIS 318
                  +++G  RH   +++A ++ S++  A IS
Sbjct: 291 DTITYNLIIEGHFRHHN-KKDAFRLLSEMENAGIS 324



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 54/294 (18%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    ++ +++GLCK    + A  +   + K G  P +V YN LI GLCK+G +  AR 
Sbjct: 534 VPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARN 593

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   +   G  PN +TYT+++    +         + + M   G T D F Y  +     
Sbjct: 594 VFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCS 653

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G L++A   +E+M   G    I S+N L++ +CK GK++    LL  +  +G   +  
Sbjct: 654 SAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 712

Query: 187 THTILIDGLCKAGNIK----------------GAR----LHLEYMN--KIGFD------- 217
           T   +I GL +AG +                  AR    L ++ +N  KI  D       
Sbjct: 713 TIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIR 772

Query: 218 -----SNLE-------------------AYNCIVDRLGKDGKIDHAINVFESME 247
                 NL+                   +Y  IVD L + GK+  A+N+ + M+
Sbjct: 773 DHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMD 826



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 41/314 (13%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            A  +++++   K+    +A  +   ++  G  P +   N L+K L +A  +    W ++
Sbjct: 47  PAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAM-ALLWKVR 105

Query: 70  E-LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           E +  +G +P+  TY+T+++   + R++    ++L  M+ +G   +   Y  +IA   + 
Sbjct: 106 EFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRS 165

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK-------------------------- 162
           G ++EA  + + M   G+  D  +Y  LIN  CK                          
Sbjct: 166 GAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVY 225

Query: 163 ---------EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
                    EG  + A+ ++ EM   G + +K T+  L+ GLCK G +  A L L+ M +
Sbjct: 226 ANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVR 285

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPS 269
                +   YN I++   +      A  +   ME      + +TYS M+H LC++     
Sbjct: 286 DSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEK 345

Query: 270 ASKLLLSCLKSGVR 283
           AS LL      G++
Sbjct: 346 ASDLLEEMTTKGLK 359



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 115/260 (44%), Gaps = 5/260 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           + I+++ L  +   + A R+   ++K+G VP++  Y+ LI GLCK      A  IL E+ 
Sbjct: 505 YGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMS 564

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN + Y  ++    ++        + +++  KG   +   Y ++I    K+G + 
Sbjct: 565 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 624

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A     +M+  G+  D   Y+ L       G LE A  L++EM  +G      +   L+
Sbjct: 625 NAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLV 683

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
           DG CK G ++     L  +   G   N      I+  L + GK+     +F  ++ K S 
Sbjct: 684 DGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSE 743

Query: 253 T----YSSMVHNLCKAKRLP 268
           +    +SS+  ++    ++P
Sbjct: 744 SAARHFSSLFMDMINQGKIP 763



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 125/273 (45%), Gaps = 9/273 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +  +L    K+   +     F+ +   G + +   Y ILI  L  +G 
Sbjct: 458 MLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGN 517

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           +  A  +L E+  +G  P+   Y++++   C   +R+   G  IL  M +KG   +   Y
Sbjct: 518 MEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFG--ILDEMSKKGVDPNIVCY 575

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +I    K G +  A +    ++  G+  + V+Y +LI+  CK G +  A+ L +EM  
Sbjct: 576 NALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLA 635

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G   D + +++L  G   AG+++ A   +E M   G  S + ++N +VD   K GK+  
Sbjct: 636 TGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHAS-ISSFNNLVDGFCKRGKMQE 694

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            + +   +     V ++ T  +++  L +A +L
Sbjct: 695 TLKLLHVIMGRGLVPNALTIENIISGLSEAGKL 727



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 109/262 (41%), Gaps = 56/262 (21%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++GLCK+     A  +F  +   G VP  VTY  LI G CK G +  A ++
Sbjct: 570 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 629

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY----TFDGF--GYC-- 119
             E+  +G  P+A  Y+ +   C      +  + ++  M  +G+    +F+    G+C  
Sbjct: 630 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKR 689

Query: 120 --------------------------TVIAAFVKIGRLKEA-TDYME------------- 139
                                      +I+   + G+L E  T ++E             
Sbjct: 690 GKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHF 749

Query: 140 -----QMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
                 M+  G + LD+V  + +I  +CKEG L+ A +L D +  +       ++  ++D
Sbjct: 750 SSLFMDMINQGKIPLDVV--DDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVD 807

Query: 194 GLCKAGNIKGARLHLEYMNKIG 215
            LC+ G +  A   L+ M+K G
Sbjct: 808 NLCRKGKLSEALNLLKEMDKRG 829


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNI++ GLC     D A  +   +   G  P++VTYNIL+ GLC+  ++  AR +L+E+
Sbjct: 215 TFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEV 274

Query: 72  G-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
                 APN ++YTT++    R  K      +   M R G   + F +  ++  FVK G 
Sbjct: 275 CLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGD 334

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +  A    ++++  G   ++++  +LIN YC+ G +     L  EM  +    + YT+++
Sbjct: 335 MASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSV 394

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI  LCK+  ++ AR  L  + +         YN ++D   K G ID A  +   ME K 
Sbjct: 395 LISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEEKC 454

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  T++ ++   C   R P A  +    L SG        + +   L  SG   EA +
Sbjct: 455 KPDKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPGEAAR 514

Query: 308 IQSKI 312
           I+  +
Sbjct: 515 IKETL 519



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 145/345 (42%), Gaps = 46/345 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N++L  LC+    ++A  ++  ++  G +P+      L+     A R   ++ +L E 
Sbjct: 110 TYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEA 169

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG   + I Y   +    ++ +    + +   + R     D F +  +I      G +
Sbjct: 170 QCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDV 229

Query: 132 KEATDYMEQMVTDGVQLDIVSYN------------------------------------T 155
            EA + +  M + G   DIV+YN                                    T
Sbjct: 230 DEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTT 289

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +I+ YC+  K++ A  L  EM + G + + +T + L+DG  KAG++  A   L    KI 
Sbjct: 290 VISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASA---LGMHKKIL 346

Query: 216 FD---SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLP 268
           F     N+     +++   + G ++H ++++  M  ++     +TYS ++  LCK+ RL 
Sbjct: 347 FHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQ 406

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            A  LL    +S +  L      V+DG   SG   EA  I +++ 
Sbjct: 407 EARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEME 451



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 3/201 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +  P   ++  +++G C+    D A  +F  + + G  P + T++ L+ G  KAG + +A
Sbjct: 279 EFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASA 338

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + K++   G APN IT T+++    R      GL++   M  +    + + Y  +I+A
Sbjct: 339 LGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISA 398

Query: 125 FVKIGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             K  RL+EA + +  +  +D V L  V YN +I+ YCK G ++ A  ++ EME++  + 
Sbjct: 399 LCKSNRLQEARNLLRILKQSDIVPLAFV-YNPVIDGYCKSGNIDEANAIVAEMEEKC-KP 456

Query: 184 DKYTHTILIDGLCKAGNIKGA 204
           DK T TILI G C  G    A
Sbjct: 457 DKLTFTILIIGHCMKGRTPEA 477



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 49/294 (16%)

Query: 24  RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 83
           R+T   L M      H F     TYN+L++ LC+AG   +A+ +   +   G  P++   
Sbjct: 96  RFTRERLSM-----SHSFW----TYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDS--- 143

Query: 84  TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
                                  +  G+         ++++F    R   + + + +   
Sbjct: 144 -----------------------RLLGF---------LVSSFALADRFDVSKELLAEAQC 171

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            GVQ+D++ YN  +N+  K  +L+ A  L  E+ +     D +T  ILI GLC AG++  
Sbjct: 172 SGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDE 231

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMV 258
           A   L  M   G   ++  YN ++  L +  ++D A ++ E + +K  F     +Y++++
Sbjct: 232 AFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVI 291

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
              C+  ++  AS L    ++SG +       A+VDG   +G    A  +  KI
Sbjct: 292 SGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKI 345


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 155/317 (48%), Gaps = 5/317 (1%)

Query: 2   ICGDLT-PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           I G LT P    ++ +++ LCK +    A  +F  +   G   ++VTY+ LI G C  G+
Sbjct: 438 IDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGK 497

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +L E+      P+  TYT ++    +  K K    +L+ M +     D F Y T
Sbjct: 498 LKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNT 557

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  ++ +  +K+A      M   GV  D+ +Y  LIN +CK   ++ A  L  EM ++ 
Sbjct: 558 LMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKN 617

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ L+DGLCK+G I      ++ M   G  +++  YN ++D L K+G +D AI
Sbjct: 618 MVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAI 677

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+ +    ++FT++ ++  LCK  RL  A ++    L  G  +       ++ G 
Sbjct: 678 ALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGH 737

Query: 297 RHSGCRREAKKIQSKIR 313
              G   EA  + SK+ 
Sbjct: 738 CKQGLLEEALTMLSKME 754



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 148/310 (47%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       AL     L   GF    V+Y  LI G+CK G  R A  +
Sbjct: 375 PSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKL 434

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      PN   Y+TI+    + +       + S M  KG + D   Y T+I  F  
Sbjct: 435 LRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCI 494

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LKEA   + +MV   +  D+ +Y  L++   KEGK++ A  +L  M K   + D +T
Sbjct: 495 VGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFT 554

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++G      +K A+     M+ +G   ++  Y  +++   K   +D A+N+F+ M 
Sbjct: 555 YNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMH 614

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D+ TYSS+V  LCK+ R+     L+      G         +++DGL  +G   
Sbjct: 615 QKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLD 674

Query: 304 EAKKIQSKIR 313
           +A  + +K++
Sbjct: 675 KAIALFNKMK 684



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 109/192 (56%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+ I++NG CK++  D AL +F+ + +   VP+ VTY+ L+ GLCK+GR+    
Sbjct: 583 VTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVW 642

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ D G   + ITY +++    +N      + + + MK +G   + F +  ++   
Sbjct: 643 DLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGL 702

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRLK+A +  + ++T G  LD+  YN +I  +CK+G LE A  +L +ME+ G   + 
Sbjct: 703 CKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNA 762

Query: 186 YTHTILIDGLCK 197
            T  I+I+ L K
Sbjct: 763 VTFDIIINALFK 774



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 138/286 (48%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+ I+++ L K      A  +   + K    P++ TYN L+ G      
Sbjct: 508 MVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYE 567

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ +   +   G  P+  TYT ++    +++     L +   M +K    D   Y +
Sbjct: 568 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSS 627

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K GR+    D +++M   G   D+++YN+LI+  CK G L+ A  L ++M+ QG
Sbjct: 628 LVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQG 687

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T TIL+DGLCK G +K A+   + +   G+  ++  YN ++    K G ++ A+
Sbjct: 688 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEAL 747

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME    + ++ T+  +++ L K      A KLL   +  G+
Sbjct: 748 TMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 117/239 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       AL     L   GF    V+Y  LI G+C+ G  R A   
Sbjct: 61  PDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKF 120

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      PN   Y TI+    + +       + S M  KG + +   Y T+I  F  
Sbjct: 121 LRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCI 180

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LKEA   +  MV   +  ++ +YN L++  CKEGK++ A  +L  M K   + +  T
Sbjct: 181 VGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVIT 240

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++ L+DG      +K A+     M+ +G   ++ +YN +++   K  ++D A+N+F+ M
Sbjct: 241 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 156/351 (44%), Gaps = 48/351 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCK---------------------NRYTDNAL--------- 30
           M+   + P   T+NI+++ LCK                     N  T + L         
Sbjct: 194 MVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYE 253

Query: 31  -----RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                 +F  +   G  P++ +YNI+I G CK  R+  A  + KE+  S   P  I +  
Sbjct: 254 VKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP-IIQFNK 312

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           I+    + + Y   + +   ++ KG   D F    +I  F  +G++      + +++  G
Sbjct: 313 ILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRG 372

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                V+ NTLI   C +G+++ A    D++  QGF+ ++ ++  LI+G+CK G+ +GA 
Sbjct: 373 YPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAI 432

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
             L  ++      N+E Y+ I+D L K   +  A  +F  M VK    D  TYS++++  
Sbjct: 433 KLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 492

Query: 262 CKAKRLPSA----SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           C   +L  A    ++++L  +   VR        +VD L   G  +EAK +
Sbjct: 493 CIVGKLKEAIGLLNEMVLKTINPDVR----TYTILVDALGKEGKVKEAKSV 539



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 139/313 (44%), Gaps = 44/313 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGL--------------------QKH------ 39
           +TP   ++NIM+NG CK +  D AL +F+ +                     KH      
Sbjct: 269 VTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVS 328

Query: 40  --------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
                   G  P+L T NILI   C  G++     +L ++   G+ P+ +T  T++K   
Sbjct: 329 LSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLC 388

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
              + K  L     +  +G+  +   Y T+I    KIG  + A   + ++     + ++ 
Sbjct: 389 LKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVE 448

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
            Y+T+I+  CK   +  AY L  EM  +G   D  T++ LI G C  G +K A   L  M
Sbjct: 449 MYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEM 508

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSS------MVHNL 261
                + ++  Y  +VD LGK+GK+  A +V   M       D FTY++      +V+ +
Sbjct: 509 VLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEV 568

Query: 262 CKAKRLPSASKLL 274
            KA+ + +A  L+
Sbjct: 569 KKAQHVFNAMSLM 581



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 4/250 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           +L +   + K G+ P+ VT N LIKGLC  G+++ A     +L   G   N ++Y T++ 
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN 106

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R    +  ++ L  +  +    +   Y T+I A  K   + EA     +M   G+  
Sbjct: 107 GVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISA 166

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++V+Y+TLI  +C  GKL+ A  LL+ M  +    +  T+ IL+D LCK G +K A+  L
Sbjct: 167 NVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVL 226

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKA 264
             M K    SN+  Y+ ++D      ++  A +VF +M +     D  +Y+ M++  CK 
Sbjct: 227 AVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKI 286

Query: 265 KRLPSASKLL 274
           KR+  A  L 
Sbjct: 287 KRVDKALNLF 296



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 4/209 (1%)

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +N    + L +L+ + ++GY  D     T+I      G++KEA  + ++++  G QL+ 
Sbjct: 39  IQNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQ 98

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           VSY TLIN  C+ G   AA   L +++ +  + +   +  +ID LCK   +  A      
Sbjct: 99  VSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSE 158

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M   G  +N+  Y+ ++      GK+  A+ +   M +K    +  TY+ +V  LCK  +
Sbjct: 159 MTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGK 218

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +  A  +L   LK+ V+        ++DG
Sbjct: 219 VKEAKSVLAVMLKACVKSNVITYSTLMDG 247


>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Glycine max]
          Length = 572

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 125/246 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  A++  ++N LCK      A+++   ++ HGF    VTYN L+KGLC  G 
Sbjct: 125 MVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGN 184

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  +  +L  L   G  PNA TY+ +++  ++ R     +++L  +  KG   +   Y  
Sbjct: 185 LNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNV 244

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K GR +EA    +++   G    +VS+N L+   C EG+ E A  LL EM+K+ 
Sbjct: 245 LLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKED 304

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ ILI  L   G  + A   L+ M + GF ++  +YN I+ RL K+GK+D  +
Sbjct: 305 QPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLVL 364

Query: 241 NVFESM 246
              + M
Sbjct: 365 KCLDQM 370



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 148/294 (50%), Gaps = 7/294 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N++L GLCK   T+ A+++F+ L   GF P +V++NIL++ LC  GR   A  +
Sbjct: 237 PNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANEL 296

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+ +TY  ++     N + +   ++L  M R G+      Y  +IA   K
Sbjct: 297 LAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCK 356

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKY 186
            G++      ++QM+      +  +Y+  I++  ++GK++ A+ ++  +  KQ F    +
Sbjct: 357 EGKVDLVLKCLDQMIHRRCHPNEGTYSA-ISMLSEQGKVQEAFFIIQSLGSKQNFPMHDF 415

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +  LI  LC+ GN   A   L  M K GF  +   Y+ ++  + ++G +D A+ +F  +
Sbjct: 416 -YKNLIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRIL 474

Query: 247 EVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           E  D       Y++++   CKA+R   + ++ L  +  G    ++    +V+GL
Sbjct: 475 EENDHRPDIDNYNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGL 528



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 10/268 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  LCK      A+R+   +   G +P+  +Y  L+  LCK G +  A  +++++   G
Sbjct: 105 LLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHG 164

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
              N +TY T++K    +      L++L  + +KG   + F Y  ++ A  K   + EA 
Sbjct: 165 FPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYKERGVDEAM 224

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             ++ ++  G + ++VSYN L+   CKEG+ E A  L  E+  +GF     +  IL+  L
Sbjct: 225 KLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSL 284

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF--- 252
           C  G  + A   L  M+K     ++  YN ++  L  +G+ + A  V + M  +  F   
Sbjct: 285 CYEGRWEEANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEM-TRSGFKAS 343

Query: 253 --TYSSMVHNLCKAKRLPSASKLLLSCL 278
             +Y+ ++  LCK  ++     L+L CL
Sbjct: 344 ATSYNPIIARLCKEGKV----DLVLKCL 367



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 140/305 (45%), Gaps = 10/305 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRG------LQKHGFVPELVTYNILIKGLCKAG 59
           ++P    FN+    + +N      LR++        L   G  PE+     L+  LCK  
Sbjct: 54  ISPKDTIFNLPNWRVGRNDQKGKELRIYDAFLHLEYLVGKGQKPEVNQATQLLYDLCKFN 113

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           + R A  +++ +  SG  P+A +YT ++    +       ++++  M+  G+  +   Y 
Sbjct: 114 KARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYN 173

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++      G L ++   ++++   G+  +  +Y+ L+    KE  ++ A  LLD++  +
Sbjct: 174 TLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAK 233

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E +  ++ +L+ GLCK G  + A    + +   GF  ++ ++N ++  L  +G+ + A
Sbjct: 234 GGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEA 293

Query: 240 INVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M+ +D      TY+ ++ +L    R   A K+L    +SG +   ++   ++  
Sbjct: 294 NELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIAR 353

Query: 296 LRHSG 300
           L   G
Sbjct: 354 LCKEG 358



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 31/192 (16%)

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  + ++A   ME MV  G+  D  SY  L+N  CK G +  A  L+++ME  GF  +  
Sbjct: 111 KFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTV 170

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  L+ GLC  GN+               + +L+    ++DRL K G I +A       
Sbjct: 171 TYNTLVKGLCMHGNL---------------NQSLQ----LLDRLTKKGLIPNA------- 204

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
                FTYS ++    K + +  A KLL   +  G      +   ++ GL   G   EA 
Sbjct: 205 -----FTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAI 259

Query: 307 KIQSKIRMAKIS 318
           K+  ++ +   S
Sbjct: 260 KLFQELPVKGFS 271



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP + T++ ++ G+C+    D AL++FR L+++   P++  YN LI G CKA R   + 
Sbjct: 444 FTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQRTDLSI 503

Query: 66  WILKELGDSGHAPNAITYTTIMK 88
            I   + + G  PN  TYT +++
Sbjct: 504 EIFLMMVNKGCVPNENTYTILVE 526



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 37/176 (21%)

Query: 48  YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
           Y  LI  LC+ G    A  +L E+   G  P++ TY+++++                 M 
Sbjct: 416 YKNLIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIR----------------GMC 459

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
           R+G          ++   +KI R+ E  D+         + DI +YN LI  +CK  + +
Sbjct: 460 REG----------MLDEALKIFRILEENDH---------RPDIDNYNALILGFCKAQRTD 500

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLC--KAGNIKGARLHLEYMNKIGFDSNLE 221
            +  +   M  +G   ++ T+TIL++GL   +  +I    +   Y+ K+   S +E
Sbjct: 501 LSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIAADLMKELYLKKVLSQSTVE 556



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P    +N ++ G CK + TD ++ +F  +   G VP   TY IL++GL        A
Sbjct: 478 DHRPDIDNYNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIA 537

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFR 92
             ++KEL    +    ++ +T+ + C +
Sbjct: 538 ADLMKEL----YLKKVLSQSTVERLCMQ 561


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 149/309 (48%), Gaps = 4/309 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +      +  +++ LC  +  ++AL +F  +   G  P +VTYN LI+ LC  GR   
Sbjct: 233 GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 292

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++ +    PN +T++ ++    +  K     ++   M ++    D F Y ++I 
Sbjct: 293 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 352

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA    E M++     ++V+YNTLI  +CK  ++E    L  EM ++G   
Sbjct: 353 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 412

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+  LI GL +AG+   A+   + M   G   ++  Y+ ++D L K GK++ A+ VF
Sbjct: 413 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 472

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++      D +TY+ M+  +CKA ++     L  S    GV+        ++ G    
Sbjct: 473 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 532

Query: 300 GCRREAKKI 308
           G + EA  +
Sbjct: 533 GLKEEADAL 541



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 149/314 (47%), Gaps = 15/314 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ +++   K      A +++  + K    P++ TY+ LI G C   R
Sbjct: 300 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 359

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      PN +TY T++K   + ++ + G+E+   M ++G   +   Y T
Sbjct: 360 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 419

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G    A    ++MV+DGV  DI++Y+ L++  CK GKLE A ++ + ++K  
Sbjct: 420 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 479

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D YT+ I+I+G+CKAG ++        ++  G   N+  Y  ++    + G  + A 
Sbjct: 480 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 539

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +F  M+   +   S   + L +A+            L+ G    K+A   ++  +R  G
Sbjct: 540 ALFREMKEDGTLPNSGTYNTLIRAR------------LRDGD---KAASAELIKEMRSCG 584

Query: 301 CRREAKKIQSKIRM 314
              +A  I   I M
Sbjct: 585 FVGDASTISMVINM 598



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 140/300 (46%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +  P T TFN +++GL  +     A+ +   +   G  P+L TY  ++ GLCK G 
Sbjct: 160 MFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 219

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LK++       + + YTTI+      +     L + + M  KG   +   Y +
Sbjct: 220 IDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 279

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      GR  +A+  +  M+   +  ++V+++ LI+ + KEGKL  A  L DEM K+ 
Sbjct: 280 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 339

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D +T++ LI+G C    +  A+   E M       N+  YN ++    K  +++  +
Sbjct: 340 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 399

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M     V ++ TY++++  L +A     A K+    +  GV         ++DGL
Sbjct: 400 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 459



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++NI++N  C+      AL +   + K G+ P++VT + L+ G C   R+  A  ++ ++
Sbjct: 101 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 160

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
               + PN +T+ T++   F + K    + ++  M  +G   D F Y TV+    K G +
Sbjct: 161 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 220

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A   +++M    ++ D+V Y T+I+  C    +  A  L  EM+ +G   +  T+  L
Sbjct: 221 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 280

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + N+  ++ ++D   K+GK+  A  +++ M  +  
Sbjct: 281 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 340

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D FTYSS+++  C   RL  A  + 
Sbjct: 341 DPDIFTYSSLINGFCMHDRLDEAKHMF 367



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 140/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + +LNG C  +    A+ +   +    + P  VT+N LI GL    +   A  +
Sbjct: 132 PDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 191

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G  P+  TY T++    +     L L +L  M++     D   Y T+I A   
Sbjct: 192 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCN 251

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A +   +M   G++ ++V+YN+LI   C  G+   A  LL +M ++    +  T
Sbjct: 252 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 311

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + LID   K G +  A    + M K   D ++  Y+ +++      ++D A ++FE M 
Sbjct: 312 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 371

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            KD F    TY++++   CKAKR+    +L     + G+         ++ GL  +G   
Sbjct: 372 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 431

Query: 304 EAKKIQSKI 312
            A+KI  K+
Sbjct: 432 MAQKIFKKM 440



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T++ ++NG C +   D A  MF  +      P +VTYN LIKG CKA R
Sbjct: 335 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 394

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +E+   G   N +TY T+++  F+     +  +I   M   G   D   Y  
Sbjct: 395 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 454

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+L++A    E +    ++ DI +YN +I   CK GK+E  + L   +  +G
Sbjct: 455 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 514

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +   +T +I G C+ G  + A      M + G   N   YN ++    +DG    + 
Sbjct: 515 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 574

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
            + + M     V D+ T  SMV N+    RL  +   +LS
Sbjct: 575 ELIKEMRSCGFVGDASTI-SMVINMLHDGRLEKSYLEMLS 613



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 127/292 (43%), Gaps = 39/292 (13%)

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +  E+  S   P+ + +  ++    +  K+ L + +   M+    ++D + Y 
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 103

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----------------- 162
            +I  F +  +L  A   + +M+  G + DIV+ ++L+N YC                  
Sbjct: 104 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 163

Query: 163 ------------------EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
                               K   A  L+D M  +G + D +T+  +++GLCK G+I  A
Sbjct: 164 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 223

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
              L+ M K   ++++  Y  I+D L     ++ A+N+F  M+ K    +  TY+S++  
Sbjct: 224 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 283

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           LC   R   AS+LL   ++  +        A++D     G   EA+K+  ++
Sbjct: 284 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 335



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 4/192 (2%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L +A D   +MV       IV +N L++   K  K +    L + M+      D Y++ 
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 103

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           ILI+  C+   +  A   L  M K+G++ ++   + +++      +I  A+ + + M V 
Sbjct: 104 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 163

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               ++ T+++++H L    +   A  L+   +  G +        VV+GL   G    A
Sbjct: 164 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 223

Query: 306 KKIQSKIRMAKI 317
             +  K+   KI
Sbjct: 224 LSLLKKMEKGKI 235


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 149/309 (48%), Gaps = 4/309 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +      +  +++ LC  +  ++AL +F  +   G  P +VTYN LI+ LC  GR   
Sbjct: 249 GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 308

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L ++ +    PN +T++ ++    +  K     ++   M ++    D F Y ++I 
Sbjct: 309 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F    RL EA    E M++     ++V+YNTLI  +CK  ++E    L  EM ++G   
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+  LI GL +AG+   A+   + M   G   ++  Y+ ++D L K GK++ A+ VF
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ++      D +TY+ M+  +CKA ++     L  S    GV+        ++ G    
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548

Query: 300 GCRREAKKI 308
           G + EA  +
Sbjct: 549 GLKEEADAL 557



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 133/265 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+ +++   K      A +++  + K    P++ TY+ LI G C   R
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ + + +      PN +TY T++K   + ++ + G+E+   M ++G   +   Y T
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G    A    ++MV+DGV  DI++Y+ L++  CK GKLE A ++ + ++K  
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 495

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D YT+ I+I+G+CKAG ++        ++  G   N+  Y  ++    + G  + A 
Sbjct: 496 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 555

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAK 265
            +F  M+   +   S   + L +A+
Sbjct: 556 ALFREMKEDGTLPNSGTYNTLIRAR 580



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 140/300 (46%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +  P T TFN +++GL  +     A+ +   +   G  P+L TY  ++ GLCK G 
Sbjct: 176 MFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 235

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LK++       + + YTTI+      +     L + + M  KG   +   Y +
Sbjct: 236 IDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 295

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      GR  +A+  +  M+   +  ++V+++ LI+ + KEGKL  A  L DEM K+ 
Sbjct: 296 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 355

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D +T++ LI+G C    +  A+   E M       N+  YN ++    K  +++  +
Sbjct: 356 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 415

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M     V ++ TY++++  L +A     A K+    +  GV         ++DGL
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++NI++N  C+      AL +   + K G+ P++VT + L+ G C   R+  A  ++ ++
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
               + PN +T+ T++   F + K    + ++  M  +G   D F Y TV+    K G +
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A   +++M    ++ D+V Y T+I+  C    +  A  L  EM+ +G   +  T+  L
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LC  G    A   L  M +   + N+  ++ ++D   K+GK+  A  +++ M  +  
Sbjct: 297 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D FTYSS+++  C   RL  A  + 
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMF 383



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 140/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + +LNG C  +    A+ +   +    + P  VT+N LI GL    +   A  +
Sbjct: 148 PDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 207

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G  P+  TY T++    +     L L +L  M++     D   Y T+I A   
Sbjct: 208 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCN 267

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A +   +M   G++ ++V+YN+LI   C  G+   A  LL +M ++    +  T
Sbjct: 268 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 327

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            + LID   K G +  A    + M K   D ++  Y+ +++      ++D A ++FE M 
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 387

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            KD F    TY++++   CKAKR+    +L     + G+         ++ GL  +G   
Sbjct: 388 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 447

Query: 304 EAKKIQSKI 312
            A+KI  K+
Sbjct: 448 MAQKIFKKM 456



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T++ ++NG C +   D A  MF  +      P +VTYN LIKG CKA R
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +E+   G   N +TY T+++  F+     +  +I   M   G   D   Y  
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+L++A    E +    ++ DI +YN +I   CK GK+E  + L   +  +G
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +   +T +I G C+ G  + A      M + G   N   YN ++    +DG    + 
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
            + + M     V D+ T  SMV N+    RL  +   +LS
Sbjct: 591 ELIKEMRSCGFVGDASTI-SMVINMLHDGRLEKSYLEMLS 629



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 127/292 (43%), Gaps = 39/292 (13%)

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +  E+  S   P+ + +  ++    +  K+ L + +   M+    ++D + Y 
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----------------- 162
            +I  F +  +L  A   + +M+  G + DIV+ ++L+N YC                  
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179

Query: 163 ------------------EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
                               K   A  L+D M  +G + D +T+  +++GLCK G+I  A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
              L+ M K   ++++  Y  I+D L     ++ A+N+F  M+ K    +  TY+S++  
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           LC   R   AS+LL   ++  +        A++D     G   EA+K+  ++
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 351



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 4/192 (2%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L +A D   +MV       IV +N L++   K  K +    L + M+      D Y++ 
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           ILI+  C+   +  A   L  M K+G++ ++   + +++      +I  A+ + + M V 
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               ++ T+++++H L    +   A  L+   +  G +        VV+GL   G    A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 306 KKIQSKIRMAKI 317
             +  K+   KI
Sbjct: 240 LSLLKKMEKGKI 251


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 119/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+  +G  PN +T+TT++    +     L +E    M R+G++ D   Y T+I   
Sbjct: 227 ELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A      M K+    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 113/215 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    ++A  +F  +  +G VP  VT+  LI G CK G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGS 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    KE+   G +P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 IDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A  Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            + D  T+T++I+  CK G++K     L+ M + G
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDG 411



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 134/272 (49%), Gaps = 4/272 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L    K +Y       ++ + + G+   L  +NIL+   CK G +R A+ +  E+   G
Sbjct: 107 VLEHFMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +   +M+ +G+  + V++ TLI+ +CK G ++ A     EM +QGF  D  T+  LI GL
Sbjct: 227 ELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G++K A+  ++ M+  G   +   Y  ++D   K+G ++ A+   + M  +    D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDD 346

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             Y++++  LC+  +   A K+L   L  G++
Sbjct: 347 VAYTALISGLCREGQSVDAEKMLREMLSVGLK 378



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK    + AL   + + K     + V Y  LI GLC+ G+   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAE 366

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
            +L+E+   G  P+  TYT I+    +    K G ++L  M+R G+
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGH 412



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  P+  TY ++I   CK G ++T   +LKE
Sbjct: 347 VAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GH P  +T
Sbjct: 407 MQRDGHVPCVVT 418


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 150/307 (48%), Gaps = 6/307 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P  ATFN ++  LC+N   +        + +HG  P+L  Y  +I G+CK G    A  
Sbjct: 245 PPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVAND 304

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL  +   G  PN + Y T++K      +++   ++L+ M ++    D   +  ++  F 
Sbjct: 305 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 364

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G +    + +EQM+  G   D+++Y T+IN +CKEG ++ A +LL  M   G + +  
Sbjct: 365 QNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTI 424

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++TI++ GLC+A     A+  + +M + G   N   +N +++ + K G ++ AI + + M
Sbjct: 425 SYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQM 484

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            V     D  +YS+++  L KA +   A +LL   +  G+        ++   L   G  
Sbjct: 485 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREG-- 542

Query: 303 REAKKIQ 309
           R  K IQ
Sbjct: 543 RTDKIIQ 549



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 138/272 (50%), Gaps = 4/272 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N++++ +C+    D  + + R L   G  P++V+YN ++KGLC A R      ++ E+  
Sbjct: 182 NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVR 241

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G  PN  T+ T++    RN  ++   E LS M   G T D   Y T+I    K G  + 
Sbjct: 242 VGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEV 301

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A D + +M + G++ ++V YNT++   C   + E A  LL EM ++    D  T  IL+D
Sbjct: 302 ANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVD 361

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----K 249
             C+ G +      LE M + G   ++  Y  +++   K+G +D A+ + ++M       
Sbjct: 362 FFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKP 421

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++ +Y+ ++  LC+A+R   A +L+   ++ G
Sbjct: 422 NTISYTIVLKGLCRAERWVDAQELISHMIQQG 453



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 137/277 (49%), Gaps = 5/277 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNI+++  C+N   D  + +   + +HG +P+++TY  +I G CK G +  A  +LK +
Sbjct: 355 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 414

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN I+YT ++K   R  ++    E++S M ++G   +   + T+I    K G +
Sbjct: 415 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLV 474

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A + ++QM+ +G   D++SY+T+I+   K GK E A  LL+ M  +G   +   ++ +
Sbjct: 475 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSM 534

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
              L + G         + +      S+   YN ++  L K  + D AI+ F  M     
Sbjct: 535 ASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGC 594

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLS-CLKSGVR 283
           + +  TY+ ++  L     +  A  LL   C +  VR
Sbjct: 595 MPNESTYTILIRGLASEGLVREAQDLLSELCSRRAVR 631



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 147/305 (48%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L GLC  +  D+   +   + + G  P + T+N LI  LC+ G        
Sbjct: 211 PDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEA 270

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++ + G  P+   Y TI+    ++  +++  +ILS M   G   +   Y TV+     
Sbjct: 271 LSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCS 330

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R +EA D + +M  +   LD V++N L++ +C+ G ++    LL++M + G   D  T
Sbjct: 331 AERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVIT 390

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +I+G CK G +  A + L+ M+  G   N  +Y  ++  L +  +   A  +   M 
Sbjct: 391 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMI 450

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + +  T++++++ +CK   +  A +LL   L +G      +   V+DGL  +G   
Sbjct: 451 QQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 510

Query: 304 EAKKI 308
           EA ++
Sbjct: 511 EALEL 515



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 39/345 (11%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    +  +++G+CK+ + + A  +   +  +G  P +V YN ++KGLC A R   A  
Sbjct: 280 TPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAED 339

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E+       + +T+  ++    +N      +E+L  M   G   D   Y TVI  F 
Sbjct: 340 LLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFC 399

Query: 127 KIG-----------------------------------RLKEATDYMEQMVTDGVQLDIV 151
           K G                                   R  +A + +  M+  G   + V
Sbjct: 400 KEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPV 459

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           ++NTLIN  CK+G +E A  LL +M   G   D  +++ +IDGL KAG  + A   L  M
Sbjct: 460 TFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM 519

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
              G   N   Y+ +   L ++G+ D  I +F+S++      D+  Y++++ +LCK    
Sbjct: 520 INKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWET 579

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             A       + +G    +S    ++ GL   G  REA+ + S++
Sbjct: 580 DRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSEL 624



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 4/236 (1%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P   TY  +++ LC  G +  A  +L E+   G A        I++   R   ++  +  
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  +  KG T D      V++A  + G + E  + + ++ + G + DIVSYN ++   C 
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
             + +    L+ EM + G   +  T   LI  LC+ G  +     L  M + G   +L  
Sbjct: 226 AKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRM 285

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           Y  I+D + KDG  + A ++   M       +   Y++++  LC A+R   A  LL
Sbjct: 286 YATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLL 341



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 128/338 (37%), Gaps = 43/338 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  ++  LC      +AL +   +   G        +++++  C+ G  R+A 
Sbjct: 104 VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAV 163

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+ L   G   ++     ++           G+E+L  +   G   D   Y  V+   
Sbjct: 164 RALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGL 223

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               R  +  + M +MV  G   ++ ++NTLI   C+ G  E  +  L +M + G   D 
Sbjct: 224 CMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDL 283

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI------------------- 226
             +  +IDG+CK G+ + A   L  M   G   N+  YN +                   
Sbjct: 284 RMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAE 343

Query: 227 ----------------VDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
                           VD   ++G +D  I + E M     + D  TY+++++  CK   
Sbjct: 344 MFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGL 403

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           +  A  LL +    G +    +   V+ GL    CR E
Sbjct: 404 VDEAVMLLKNMSACGCKPNTISYTIVLKGL----CRAE 437


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 149/310 (48%), Gaps = 2/310 (0%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+  ++NG C+    D A ++ + +  HG  P  V+Y  L+ G+C+ G+   A
Sbjct: 445 DCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEA 504

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R ++    +   +PN+ITY+ IM    R  K     +++  M  KG+         ++ +
Sbjct: 505 REMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQS 564

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + GR  EA  +ME+ +  G  +++V++ T+I+ +C+  +L+AA  +LD+M       D
Sbjct: 565 LCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHAD 624

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            +T+T L+D L K G I  A   ++ M   G D     Y  ++ R  + GK+D  + + E
Sbjct: 625 VFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILE 684

Query: 245 SM--EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            M    K    Y+ ++  LC   +L  A  LL   L++  R       A+++G    G  
Sbjct: 685 KMISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVP 744

Query: 303 REAKKIQSKI 312
             A K+  ++
Sbjct: 745 LSAYKVACRM 754



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 139/284 (48%), Gaps = 8/284 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M+ G C     + A+ +   +   G +P+ V+Y  ++  LCK  R+   R
Sbjct: 308 IVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVR 367

Query: 66  WILKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++K++  + G  P+ +TY T++    ++      L  L   + KG+  D  GY  ++ A
Sbjct: 368 DLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHA 427

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR+ EA D + +M       D+V+Y  ++N +C+ G+++ A  LL  M   G + +
Sbjct: 428 LCKEGRMSEAKDLINEM---DCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPN 484

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++T L++G+C+ G    AR  +    +  +  N   Y+ I+  L ++GK+  A +V  
Sbjct: 485 TVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVR 544

Query: 245 SMEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            M +K  F      + ++ +LC+  R   A K +  CL  G  I
Sbjct: 545 EMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAI 588



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 139/295 (47%), Gaps = 2/295 (0%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ML  L K +    + R+   +++ G       ++ ++    +AG+LR A  +L  +  +G
Sbjct: 213 MLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAG 272

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             PN +   T +    R  + +  L  L  M+  G   +   Y  +I  +  + R++EA 
Sbjct: 273 VEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAI 332

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDG 194
           + +E M + G   D VSY T++   CKE ++     L+ +M K+ G   D+ T+  LI  
Sbjct: 333 ELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHM 392

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-VKDSFT 253
           L K  +   A   L+   + GF  +   Y+ IV  L K+G++  A ++   M+   D  T
Sbjct: 393 LTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPPDVVT 452

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           Y+++V+  C+   +  A KLL      G +    +  A+++G+  +G   EA+++
Sbjct: 453 YTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREM 507



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 7/238 (2%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P  + Y ++++   + +  +    +L  MKR+G       +  V+ ++ + G+L++A 
Sbjct: 205 HDP--MVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDAL 262

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             +  M   GV+ +++  NT I+++ +  +LE A   L+ M+  G   +  T+  +I G 
Sbjct: 263 KVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGY 322

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-----VKD 250
           C    ++ A   LE M+  G   +  +Y  I+  L K+ +I    ++ + M      V D
Sbjct: 323 CDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPD 382

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             TY++++H L K      A   L    + G RI K    A+V  L   G   EAK +
Sbjct: 383 QVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDL 440



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 2/199 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P     N++L  LC++  T  A +        G    +V +  +I G C+   
Sbjct: 546 MVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDE 605

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L ++       +  TYTT++    +  +     E++  M  KG       Y T
Sbjct: 606 LDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRT 665

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  + ++G++ +    +E+M++      I  YN +I   C  GKLE A  LL ++ +  
Sbjct: 666 VIHRYCQMGKVDDLVAILEKMISRQKCRTI--YNQVIEKLCVLGKLEEADTLLGKVLRTA 723

Query: 181 FECDKYTHTILIDGLCKAG 199
              D  T   L++G  K G
Sbjct: 724 SRSDAKTCYALMEGYLKKG 742



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 4/168 (2%)

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           Y  D   Y +++    K    + +   +  M   G+     +++ ++  Y + G+L  A 
Sbjct: 203 YRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDAL 262

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +L  M++ G E +       ID   +A  ++ A   LE M  +G   N+  YNC++   
Sbjct: 263 KVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGY 322

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
               +++ AI + E M  K    D  +Y +++  LCK KR+     L+
Sbjct: 323 CDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLM 370


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 153/303 (50%), Gaps = 4/303 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T ++NI++N L +      A  +   ++  G +P++V+Y  +I G C  G L+    ++K
Sbjct: 110 TESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVK 169

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G  PN  TY++I+    ++ K   G ++L  M ++G   D   Y T+I  F K+G
Sbjct: 170 EMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLG 229

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             + A     +M    +  D ++++ LI      GK+  A  L +EM K+GFE D+ T+T
Sbjct: 230 NTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYT 289

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LIDG CK G +K A      M +IG   N+  Y  + D L K G++D A  +   M  K
Sbjct: 290 ALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRK 349

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               +  TY+++V+ LCKA  +  A KL+    ++G+         ++D    +G   +A
Sbjct: 350 GLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKA 409

Query: 306 KKI 308
           +++
Sbjct: 410 REL 412



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 151/305 (49%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  +++G C        +++ + +Q  G  P L TY+ +I  LCK+G++     +
Sbjct: 143 PDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKV 202

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  P+ + YTT++    +    +   ++ S M+ +    D   +  +I     
Sbjct: 203 LREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSG 262

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ EA     +M+  G + D V+Y  LI+ YCK G+++ A+ L ++M + G   +  T
Sbjct: 263 SGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVT 322

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L DGLCK+G +  A   L  M + G   N+  YN IV+ L K G I  A+ + E M+
Sbjct: 323 YTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMK 382

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D+ TY++++    K   +  A +LL   L  G++        +++GL  SG   
Sbjct: 383 EAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLE 442

Query: 304 EAKKI 308
           + +++
Sbjct: 443 DGERL 447



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 153/313 (48%), Gaps = 4/313 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P +  F+ ++ GL  +     A ++F  + K GF P+ VTY  LI G CK G ++ A
Sbjct: 245 EIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKA 304

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++  ++   G  PN +TYT +     ++ +     E+L  M RKG   +   Y T++  
Sbjct: 305 FFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNG 364

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G + +A   ME+M   G+  D ++Y TL++ Y K G++  A  LL EM  +G +  
Sbjct: 365 LCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPT 424

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T  +L++GLC +G ++     L++M + G   N   YN I+ +      +  +  ++ 
Sbjct: 425 VVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYR 484

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M     V DS TY+ ++   CKA+ +  A  L    ++    +  S+  A++ G     
Sbjct: 485 GMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRK 544

Query: 301 CRREAKKIQSKIR 313
              EA+++  ++R
Sbjct: 545 KLLEARQLFEEMR 557



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 150/311 (48%), Gaps = 8/311 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++ ++  LCK+       ++ R + K G  P+ V Y  LI G CK G  + A 
Sbjct: 176 LKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAY 235

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+      P++I ++ ++     + K     ++ + M +KG+  D   Y  +I  +
Sbjct: 236 KLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGY 295

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +K+A     QMV  G+  ++V+Y  L +  CK G+L+ A  LL EM ++G + + 
Sbjct: 296 CKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNI 355

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +++GLCKAGNI  A   +E M + G   +   Y  ++D   K G++  A  +   
Sbjct: 356 STYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLRE 415

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +       T++ +++ LC + +L    +LL   L+ G+        A  + +    C
Sbjct: 416 MLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIM----PNAATYNSIMKQYC 471

Query: 302 RREAKKIQSKI 312
            R   +I ++I
Sbjct: 472 IRNNMRISTEI 482



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 132/297 (44%), Gaps = 38/297 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  +++G CK      A  +   + + G  P +VTY  L  GLCK+G 
Sbjct: 276 MIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGE 335

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L TA  +L E+   G   N  TY TI+    +       ++++  MK  G   D   Y T
Sbjct: 336 LDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTT 395

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EK- 178
           ++ A+ K G + +A + + +M+  G+Q  +V++N L+N  C  GKLE    LL  M EK 
Sbjct: 396 LMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKG 455

Query: 179 ---------------------------------QGFECDKYTHTILIDGLCKAGNIKGAR 205
                                            QG   D  T+ ILI G CKA N+K A 
Sbjct: 456 IMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAW 515

Query: 206 -LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL 261
            LH E + K  F+    +YN ++    K  K+  A  +FE M  ++    S+ ++NL
Sbjct: 516 FLHKEMVEK-RFNLTASSYNALIKGFFKRKKLLEARQLFEEMR-REGLVASAEIYNL 570



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 113/232 (48%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           +T+N ++NGLCK      A+++   +++ G  P+ +TY  L+    K G +  AR +L+E
Sbjct: 356 STYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLRE 415

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D G  P  +T+  +M     + K + G  +L  M  KG   +   Y +++  +     
Sbjct: 416 MLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNN 475

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++ +T+    M   GV  D  +YN LI  +CK   ++ A+ L  EM ++ F     ++  
Sbjct: 476 MRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNA 535

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           LI G  K   +  AR   E M + G  ++ E YN  VD   ++G ++  + +
Sbjct: 536 LIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLEL 587



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 146/344 (42%), Gaps = 40/344 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC-KAGRLRTARWILKE 70
            F++    L +    + A + F  L  +G      + N+ +  L  K   L     +  E
Sbjct: 41  VFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSE 100

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
               G   N  +Y  +M   FR  K +    +L  M+ KG   D   Y T+I  +  +G 
Sbjct: 101 FPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGE 160

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L++    +++M   G++ ++ +Y+++I L CK GK+     +L EM K+G   D   +T 
Sbjct: 161 LQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTT 220

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---- 246
           LIDG CK GN + A      M       +  A++ ++  L   GK+  A  +F  M    
Sbjct: 221 LIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKG 280

Query: 247 -------------------EVKDSF----------------TYSSMVHNLCKAKRLPSAS 271
                              E+K +F                TY+++   LCK+  L +A+
Sbjct: 281 FEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTAN 340

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
           +LL    + G+++  S    +V+GL  +G   +A K+  +++ A
Sbjct: 341 ELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEA 384



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 2/198 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+  +++   K      A  + R +   G  P +VT+N+L+ GLC +G+L    
Sbjct: 386 LHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGE 445

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +LK + + G  PNA TY +IMK  C RN   ++  EI   M  +G   D   Y  +I  
Sbjct: 446 RLLKWMLEKGIMPNAATYNSIMKQYCIRN-NMRISTEIYRGMCAQGVVPDSNTYNILIKG 504

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K   +KEA    ++MV     L   SYN LI  + K  KL  A  L +EM ++G    
Sbjct: 505 HCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVAS 564

Query: 185 KYTHTILIDGLCKAGNIK 202
              + + +D   + GN++
Sbjct: 565 AEIYNLFVDMNYEEGNME 582



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN+++NGLC +   ++  R+ + + + G +P   TYN ++K  C    +R + 
Sbjct: 421 LQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRIST 480

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + +   G  P++ TY  ++K   + R  K    +   M  K +      Y  +I  F
Sbjct: 481 EIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGF 540

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            K  +L EA    E+M  +G+      YN  +++  +EG +E    L DE
Sbjct: 541 FKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDE 590


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 152/306 (49%), Gaps = 4/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ +++ LC++   D A+ +F+ ++  G    +VTYN L++GLCKAG+      +LK++
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PN IT+  ++    +  K +   E+   M  +G + +   Y T++  +    RL
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + ++ MV +    DIV++ +LI  YC   +++    +   + K+G   +  T++IL
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           + G C++G IK A    + M   G   ++  Y  ++D L  +GK++ A+ +FE ++    
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 252 ----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
                 Y++++  +CK  ++  A  L  S    GV+        ++ GL   G   EA  
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 308 IQSKIR 313
           +  K+ 
Sbjct: 530 LLRKME 535



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N  C+   T  A  +   + K G+ P+  T+N LI GLC  G++  A  ++  +
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRM 184

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++G  P+ +TY +I+    R+    L  ++L  M+ +    D F Y T+I +  + G +
Sbjct: 185 VENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A    ++M T G++  +V+YN+L+   CK GK     LLL +M  +    +  T  +L
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           +D   K G ++ A    + M   G   N+  YN ++D      ++  A N+ + M     
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             D  T++S++   C  KR+    K+  +  K G+         +V G   SG
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 148/300 (49%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFN++L+   K      A  +++ +   G  P ++TYN L+ G C   R
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L  +  +  +P+ +T+T+++K     ++   G+++   + ++G   +   Y  
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G++K A +  ++MV+ GV  D+++Y  L++  C  GKLE A  + ++++K  
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +     +T +I+G+CK G ++ A      +   G   N+  Y  ++  L K G +  A 
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 528

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME      +  TY++++    +   L +++KL+      G     S+ K V+D L
Sbjct: 529 ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 159/321 (49%), Gaps = 18/321 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TFN ++NGLC       A+ +   + ++G  P++VTYN ++ G+C++G    A  +
Sbjct: 156 PDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDM 215

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ +     +  TY+TI+    R+      + +   M+ KG       Y +++    K
Sbjct: 216 LRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCK 275

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +    ++ MV+  +  +++++N L++++ KEGKL+ A  L  EM  +G   +  T
Sbjct: 276 AGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIIT 335

Query: 188 HTILIDGLCKAGNIKGARLHLEYM--NK-----IGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  L+DG C    +  A   L+ M  NK     + F S ++ Y C+V R      +D  +
Sbjct: 336 YNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY-CMVKR------VDDGM 388

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            VF ++     V ++ TYS +V   C++ ++  A +L    +  GV         ++DGL
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 297 RHSGCRREAKKIQSKIRMAKI 317
             +G   +A +I   ++ +K+
Sbjct: 449 CDNGKLEKALEIFEDLQKSKM 469



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 123/233 (52%), Gaps = 1/233 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TF  ++ G C  +  D+ +++FR + K G V   VTY+IL++G C++G+++ A  
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +E+   G  P+ +TY  ++     N K +  LEI   +++         Y T+I    
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++++A +    +   GV+ ++++Y  +I+  CK+G L  A +LL +ME+ G   +  
Sbjct: 485 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 544

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           T+  LI    + G++  +   +E M   GF ++  +   ++D L   G++D +
Sbjct: 545 TYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML-LSGELDKS 596



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 131/273 (47%), Gaps = 4/273 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F+ + +   +P LV ++     + +  +        K+L  +G A N  T   +
Sbjct: 70  DDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  K      +L  + + GY  D   + T+I      G++ +A   +++MV +G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGC 189

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q D+V+YN+++N  C+ G    A+ +L +ME++  + D +T++ +ID LC+ G I  A  
Sbjct: 190 QPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             + M   G  S++  YN +V  L K GK +    + + M     V +  T++ ++    
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           K  +L  A++L    +  G+         ++DG
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDG 342



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           C  + P   T+ +M++GLCK      A  + R +++ G  P   TYN LI+   + G L 
Sbjct: 501 CKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLT 560

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
            +  +++E+   G + +A +   ++         K  L++LS
Sbjct: 561 ASAKLIEEMKSCGFSADASSIKMVIDMLLSGELDKSFLDMLS 602


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 39/305 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFNI+++  C+N      + +   + +HG VP+++TY  +I G CK G +  A  +LK +
Sbjct: 367 TFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSM 426

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN I+YT ++K                            G C+         R 
Sbjct: 427 AACGCRPNTISYTIVLK----------------------------GLCSA-------ERW 451

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D M QM+  G   + V++NT+IN  CK+G +E A  LL +M   G   D  +++ +
Sbjct: 452 VDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTV 511

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDGL KAG    A   L  M   G   N   Y+ I   L K+G+I+  I +F++++    
Sbjct: 512 IDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTI 571

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+  Y++++ +LCK      A + L   + SG    +S    ++ GL   G  +EA++
Sbjct: 572 RSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQE 631

Query: 308 IQSKI 312
           + +++
Sbjct: 632 MLTEL 636



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 134/272 (49%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFN ++  LC+N   +   ++   +  HG  P++  Y  ++ G+CK G L  A  
Sbjct: 257 PPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHE 316

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL  +   G  PN + Y T++K      +++   E+L+ M       D   +  ++  F 
Sbjct: 317 ILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFC 376

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G +    + +EQM+  G   D+++Y T+IN +CKEG ++ A +LL  M   G   +  
Sbjct: 377 QNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTI 436

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++TI++ GLC A     A   +  M + G   N   +N +++ L K G ++ AI + + M
Sbjct: 437 SYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQM 496

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +     D  +YS+++  L KA +   A +LL
Sbjct: 497 LLNGCSPDLISYSTVIDGLGKAGKTDEALELL 528



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 142/274 (51%), Gaps = 6/274 (2%)

Query: 14  NIMLNGLC-KNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           N++LN +C +    D ALR+ R L    G  P++V+YN ++KGLC A R    + +++E+
Sbjct: 192 NLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEM 251

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN +T+ T++    RN  ++   ++L+ M   G T D   Y TV+    K G L
Sbjct: 252 VRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHL 311

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A + +++M + G++ ++V YNT++   C   + E A  LL EM       D  T  IL
Sbjct: 312 EVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNIL 371

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           +D  C+ G +      LE M + G   ++  Y  +++   K+G ID A+ + +SM     
Sbjct: 372 VDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGC 431

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             ++ +Y+ ++  LC A+R   A  L+   ++ G
Sbjct: 432 RPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG 465



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +L GLC  +       +   + + G  P +VT+N LI  LC+ G       +
Sbjct: 223 PDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQV 282

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++ D G  P+   Y T++    +    ++  EIL  M   G   +   Y TV+     
Sbjct: 283 LAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCS 342

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R ++A + + +M  +   LD V++N L++ +C+ G +     LL++M + G   D  T
Sbjct: 343 AERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVIT 402

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +I+G CK G I  A + L+ M   G   N  +Y  ++  L    +   A ++   M 
Sbjct: 403 YTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMI 462

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    +  T++++++ LCK   +  A +LL   L +G      +   V+DGL  +G   
Sbjct: 463 EQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTD 522

Query: 304 EAKKI 308
           EA ++
Sbjct: 523 EALEL 527



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+  ++NG CK    D A+ + + +   G  P  ++Y I++KGLC A R   A  
Sbjct: 397 VPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAED 456

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ ++ + G +PN +T+ T++    +    +  +E+L  M   G + D   Y TVI    
Sbjct: 457 LMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLG 516

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G+  EA + +  MV  G+  + + Y+++ +   KEG++     + D ++      D  
Sbjct: 517 KAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAV 576

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +  +I  LCK G    A   L YM   G   N   Y  ++  L  +G +  A  +   +
Sbjct: 577 LYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTEL 636

Query: 247 EVKDSFTYSSMVH 259
             K +     M H
Sbjct: 637 CSKGALRKHFMKH 649



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 146/355 (41%), Gaps = 52/355 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC--------- 56
           + P   T+  ++  LC      +AL +   +++ G  P    Y+++++  C         
Sbjct: 111 VPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFR 170

Query: 57  ------------------------------KAGRLRTARWILKELGDS-GHAPNAITYTT 85
                                         + G +  A  +L++L  S G  P+ ++Y  
Sbjct: 171 SAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNA 230

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++K     +++    +++  M R G   +   + T+I    + G  +     + QMV  G
Sbjct: 231 VLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHG 290

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
              DI  Y T+++  CKEG LE A+ +LD M   G + +   +  ++ GLC A   + A 
Sbjct: 291 CTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAE 350

Query: 206 LHLEYMNKIGFDSNLE----AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
             L  M    FD++       +N +VD   ++G +   I + E M     V D  TY+++
Sbjct: 351 ELLAEM----FDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTV 406

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           ++  CK   +  A  LL S    G R    +   V+ GL  +    +A+ + S++
Sbjct: 407 INGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQM 461



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 14/237 (5%)

Query: 48  YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYKLGLEILSAM 106
           YN ++ G C+AG+L +AR +   +      PNA TY  +++  C R R     L +L  M
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASV---PVPPNAYTYFPVVRALCARGRIAD-ALSVLDEM 141

Query: 107 KRKGYTFDGFGYCTVIAAFVK---IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
           +R+G       Y  ++ A       G  + A   ++ +   G  LD+ + N ++N  C +
Sbjct: 142 RRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQ 201

Query: 164 GKL--EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           G    EA  LL D     G + D  ++  ++ GLC A      +  +E M ++G   N+ 
Sbjct: 202 GGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVV 261

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +N ++  L ++G  +    V   M       D   Y++++  +CK   L  A ++L
Sbjct: 262 TFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEIL 318


>gi|255574125|ref|XP_002527978.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532604|gb|EEF34390.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 127/273 (46%), Gaps = 6/273 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P  ATFN  + G C     D AL +F  +   G  P  VT NIL+  LCK G L  A+ 
Sbjct: 192 SPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVHALCKRGLLEDAKK 251

Query: 67  ILKELGDSGHAP--NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           +L EL D       N IT T +M  C +N      L I  AM +     D   Y  +I  
Sbjct: 252 LLGELLDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLIHG 311

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F     +K A  Y   M+  G+  DI +YNTLI+  CK GKL  A  + D M + G   D
Sbjct: 312 FCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPD 371

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           + ++ I+I GLC  G++  A  HL  M +         +N I+D   + G   +A ++ +
Sbjct: 372 QISYKIVIQGLCTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRD 431

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
            M     V + FTY++++H   K   +  A  L
Sbjct: 432 QMLSFGVVPNVFTYNALIHAQVKTGNIVDAYSL 464



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL + R L   GFVP+++T+N L+ GLC +G L+ A  ++KE+ + G +PN  T+ T +K
Sbjct: 144 ALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEIGPSPNCATFNTFIK 203

Query: 89  -CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-- 145
             C  N   K  L + S+M   G   +      ++ A  K G L++A   + +++ D   
Sbjct: 204 GYCLLNNVDK-ALYLFSSMSDSGVKPNRVTLNILVHALCKRGLLEDAKKLLGELLDDNEK 262

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            ++++++   L++   K G +  A  +   M +     D   + +LI G C   N+K A 
Sbjct: 263 ARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLIHGFCLTRNMKLAY 322

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNL 261
            +   M K G   ++  YN ++  L K GK+  A  + + M       D  +Y  ++  L
Sbjct: 323 SYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPDQISYKIVIQGL 382

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           C    +  A++ L   L+  +         ++DG    G    A  I+ ++
Sbjct: 383 CTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQM 433



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++GLCK      A  +   + + G  P+ ++Y I+I+GLC  G +  A 
Sbjct: 333 LLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPDQISYKIVIQGLCTRGDVLKAN 392

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L  + +    P A  +  I+    R         I   M   G   + F Y  +I A 
Sbjct: 393 EHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQMLSFGVVPNVFTYNALIHAQ 452

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK G + +A    + M+  G+  D+++YN LI   C  G++  A  L  EM + G E D 
Sbjct: 453 VKTGNIVDAYSLKKMMLCHGLFPDVITYNLLIGTACNAGRISIAVQLYYEMLRSGHEPDI 512

Query: 186 YTHTILIDGLCKAGNIKGAR 205
            T+T LI GLC  GN+K A+
Sbjct: 513 ITYTELIRGLCMRGNMKEAK 532



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 118/277 (42%), Gaps = 4/277 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T  I+++G  KN     AL ++  + ++  + + V YN+LI G C    ++ A     ++
Sbjct: 269 TSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLIHGFCLTRNMKLAYSYSCDM 328

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  TY T++    +  K      I   M R G   D   Y  VI      G +
Sbjct: 329 LKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPDQISYKIVIQGLCTRGDV 388

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +++  M+   +  +   +N +I+ + + G    A+ + D+M   G   + +T+  L
Sbjct: 389 LKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQMLSFGVVPNVFTYNAL 448

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           I    K GNI  A    + M   G   ++  YN ++      G+I  A+ ++  M     
Sbjct: 449 IHAQVKTGNIVDAYSLKKMMLCHGLFPDVITYNLLIGTACNAGRISIAVQLYYEMLRSGH 508

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             D  TY+ ++  LC    +  A +L      +G+ +
Sbjct: 509 EPDIITYTELIRGLCMRGNMKEAKELFAKLQNTGLTV 545



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++   K     +A  + + +  HG  P+++TYN+LI   C AGR
Sbjct: 433 MLSFGVVPNVFTYNALIHAQVKTGNIVDAYSLKKMMLCHGLFPDVITYNLLIGTACNAGR 492

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +  E+  SGH P+ ITYT +++  C R    K   E+ + ++  G T D   + 
Sbjct: 493 ISIAVQLYYEMLRSGHEPDIITYTELIRGLCMRG-NMKEAKELFAKLQNTGLTVDHVPFQ 551

Query: 120 TVI 122
            +I
Sbjct: 552 LLI 554



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 7/170 (4%)

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
            V +    + +L+   C  GKL AA  L  ++  +GF  D  TH  L++GLC +G+++ A
Sbjct: 120 SVDVSYAGHASLVRDLCLAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKA 179

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VK-DSFTYSSMVHN 260
              ++ M +IG   N   +N  +        +D A+ +F SM    VK +  T + +VH 
Sbjct: 180 DCLIKEMLEIGPSPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVHA 239

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           LCK   L  A KLL   L       K+    +   +   GC +    +Q+
Sbjct: 240 LCKRGLLEDAKKLLGELLDDNE---KARVNLITSTILMDGCIKNGDMVQA 286



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 73/187 (39%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++ I++ GLC       A      + +   VPE   +N++I G  + G    A 
Sbjct: 368 VAPDQISYKIVIQGLCTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAF 427

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  ++   G  PN  TY  ++    +         +   M   G   D   Y  +I   
Sbjct: 428 SIRDQMLSFGVVPNVFTYNALIHAQVKTGNIVDAYSLKKMMLCHGLFPDVITYNLLIGTA 487

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR+  A     +M+  G + DI++Y  LI   C  G ++ A  L  +++  G   D 
Sbjct: 488 CNAGRISIAVQLYYEMLRSGHEPDIITYTELIRGLCMRGNMKEAKELFAKLQNTGLTVDH 547

Query: 186 YTHTILI 192
               +LI
Sbjct: 548 VPFQLLI 554



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +N++++G  +   + NA  +   +   G VP + TYN LI    K G 
Sbjct: 398 MLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQMLSFGVVPNVFTYNALIHAQVKTGN 457

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + K +   G  P+ ITY  ++       +  + +++   M R G+  D   Y  
Sbjct: 458 IVDAYSLKKMMLCHGLFPDVITYNLLIGTACNAGRISIAVQLYYEMLRSGHEPDIITYTE 517

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           +I      G +KEA +   ++   G+ +D V +  LI
Sbjct: 518 LIRGLCMRGNMKEAKELFAKLQNTGLTVDHVPFQLLI 554



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C  L P   T+N+++   C       A++++  + + G  P+++TY  LI+GLC  G 
Sbjct: 468 MLCHGLFPDVITYNLLIGTACNAGRISIAVQLYYEMLRSGHEPDIITYTELIRGLCMRGN 527

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCF-------RNRKYKLGLEIL 103
           ++ A+ +  +L ++G   + + +  ++K  F       RNR   LGL  L
Sbjct: 528 MKEAKELFAKLQNTGLTVDHVPFQLLIKNTFNLLLTLARNR--ALGLSYL 575



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%)

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           G+ +++      G+L  A     +++  G   DI+++N L+N  C  G L+ A  L+ EM
Sbjct: 127 GHASLVRDLCLAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEM 186

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            + G   +  T    I G C   N+  A      M+  G   N    N +V  L K G +
Sbjct: 187 LEIGPSPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVHALCKRGLL 246

Query: 237 DHA 239
           + A
Sbjct: 247 EDA 249


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 152/306 (49%), Gaps = 4/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ +++ LC++   D A+ +F+ ++  G    +VTYN L++GLCKAG+      +LK++
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PN IT+  ++    +  K +   E+   M  +G + +   Y T++  +    RL
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + ++ MV +    DIV++ +LI  YC   +++    +   + K+G   +  T++IL
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           + G C++G IK A    + M   G   ++  Y  ++D L  +GK++ A+ +FE ++    
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 252 ----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
                 Y++++  +CK  ++  A  L  S    GV+        ++ GL   G   EA  
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 308 IQSKIR 313
           +  K+ 
Sbjct: 530 LLRKME 535



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N  C+   T  A  +   + K G+ P+  T+N LIKGL   G++  A  ++  +
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++G  P+ +TY +I+    R+    L L++L  M+ +    D F Y T+I +  + G +
Sbjct: 185 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A    ++M T G++  +V+YN+L+   CK GK     LLL +M  +    +  T  +L
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           +D   K G ++ A    + M   G   N+  YN ++D      ++  A N+ + M     
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             D  T++S++   C  KR+    K+  +  K G+         +V G   SG
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 148/300 (49%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFN++L+   K      A  +++ +   G  P ++TYN L+ G C   R
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L  +  +  +P+ +T+T+++K     ++   G+++   + ++G   +   Y  
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G++K A +  ++MV+ GV  D+++Y  L++  C  GKLE A  + ++++K  
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +     +T +I+G+CK G ++ A      +   G   N+  Y  ++  L K G +  A 
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 528

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME      +  TY++++    +   L +++KL+      G     S+ K V+D L
Sbjct: 529 ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 123/233 (52%), Gaps = 1/233 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TF  ++ G C  +  D+ +++FR + K G V   VTY+IL++G C++G+++ A  
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +E+   G  P+ +TY  ++     N K +  LEI   +++         Y T+I    
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++++A +    +   GV+ ++++Y  +I+  CK+G L  A +LL +ME+ G   +  
Sbjct: 485 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 544

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           T+  LI    + G++  +   +E M   GF ++  +   ++D L   G++D +
Sbjct: 545 TYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML-LSGELDKS 596



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 157/321 (48%), Gaps = 18/321 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TFN ++ GL        A+ +   + ++G  P++VTYN ++ G+C++G    A  +
Sbjct: 156 PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDL 215

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ +     +  TY+TI+    R+      + +   M+ KG       Y +++    K
Sbjct: 216 LRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCK 275

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +    ++ MV+  +  +++++N L++++ KEGKL+ A  L  EM  +G   +  T
Sbjct: 276 AGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIIT 335

Query: 188 HTILIDGLCKAGNIKGARLHLEYM--NK-----IGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  L+DG C    +  A   L+ M  NK     + F S ++ Y C+V R      +D  +
Sbjct: 336 YNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY-CMVKR------VDDGM 388

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            VF ++     V ++ TYS +V   C++ ++  A +L    +  GV         ++DGL
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 297 RHSGCRREAKKIQSKIRMAKI 317
             +G   +A +I   ++ +K+
Sbjct: 449 CDNGKLEKALEIFEDLQKSKM 469



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 129/271 (47%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+   + + + +  +  L   + L+ +G    + T NI+I   C+  +   A  +
Sbjct: 86  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+  T+ T++K  F   K    + ++  M   G   D   Y +++    +
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A D + +M    V+ D+ +Y+T+I+  C++G ++AA  L  EME +G +    T
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+ GLCKAG      L L+ M       N+  +N ++D   K+GK+  A  +++ M 
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    +  TY++++   C   RL  A+ +L
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNML 356



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 4/273 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F+ + +   +P LV ++     + +  +        K+L  +G A N  T   +
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  K      +L  + + GY  D   + T+I      G++ EA   +++MV +G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q D+V+YN+++N  C+ G    A  LL +ME++  + D +T++ +ID LC+ G I  A  
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             + M   G  S++  YN +V  L K GK +    + + M     V +  T++ ++    
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           K  +L  A++L    +  G+         ++DG
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDG 342



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           C  + P   T+ +M++GLCK      A  + R +++ G  P   TYN LI+   + G L 
Sbjct: 501 CKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLT 560

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
            +  +++E+   G + +A +   ++         K  L++LS
Sbjct: 561 ASAKLIEEMKSCGFSADASSIKMVIDMLLSGELDKSFLDMLS 602


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 133/274 (48%), Gaps = 4/274 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+N ++N LC     + A  +F+ +  HG +P   TYN +IK  C  G 
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGD 427

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  I  ++  +G +PN ITY T++    +       + +L  MK  G   D + Y  
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTE 487

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ F + G+L+ AT     M+  G+  + V+Y  +I+ Y    K++ A  L  +M + G
Sbjct: 488 LISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESG 547

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ ++I G  K  +I  A      M K G   N+  Y   +D L ++G+   A 
Sbjct: 548 NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAF 607

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSA 270
            +F  ME ++ F    TYSS+++ LC+  R   A
Sbjct: 608 KIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA 641



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 143/334 (42%), Gaps = 39/334 (11%)

Query: 1   MICGDLTPCTATFNIMLN-----------------------------------GLCKNRY 25
           M+   + P   TFN M+N                                   G C+N  
Sbjct: 193 MLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHN 252

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
            D A  MF  + K G  P  VTY+ LI GLC  GRL  A  +L+E+   G  P   TYT 
Sbjct: 253 LDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
            +            +E+L  MK++G   +   +  +I+   + G+ + A     +M+ DG
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG 372

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +    V+YN LIN  C EG+ E A+ +   M   G      T+  +I   C  G+I+ A 
Sbjct: 373 LVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAM 432

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
           +  + M K G   N+  YN ++    K G +++A+ + E M+      D++TY+ ++   
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +  +L  A+ L    ++ G+        A++DG
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 136/309 (44%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T++ ++NGLC     + A+ M   + + G  P + TY I +  LC AG    A  +
Sbjct: 270 PNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVEL 329

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G  PN  T+T ++    R+ K+++ + +   M   G       Y  +I     
Sbjct: 330 LGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCV 389

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR + A    + M++ G      +YN +I  +C  G ++ A ++ D+M K G   +  T
Sbjct: 390 EGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVIT 449

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G CK GN+  A   LE M   G   +   Y  ++    + GK++HA ++F  M 
Sbjct: 450 YNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMM 509

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 +  TY++++       ++  A  L    ++SG          ++ G   +    
Sbjct: 510 EHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSIS 569

Query: 304 EAKKIQSKI 312
           EA+    K+
Sbjct: 570 EAENFCGKM 578



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 125/274 (45%), Gaps = 39/274 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F  +L  L K    D A  M+  +   G  P L+T+N +I  LCK GR++ A+ I+  +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PNA TYT+++    RN    L   +                             
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMF---------------------------- 260

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
                  ++MV DG   + V+Y+TLIN  C EG+LE A  +L+EM ++G E   YT+TI 
Sbjct: 261 -------DRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIP 313

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           +  LC AG    A   L  M K G   N++ +  ++  L +DGK + AI ++  M     
Sbjct: 314 LVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGL 373

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           V  + TY+++++ LC   R  +A  +    L  G
Sbjct: 374 VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 4/202 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+   ++GLC+N  T  A ++F  ++K  + P L TY+ LI GLC+ GR
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGR 637

Query: 61  LRTARW--ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
              A    +L  L   G  PN  TYTT++K  C   R Y+   +++ +M++KG       
Sbjct: 638 AEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEAD-QLVVSMQKKGLQPSEEI 696

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y  ++    K  +++ A +    M T G QL +  Y  LI   CKE  +E A  +   M 
Sbjct: 697 YRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTML 756

Query: 178 KQGFECDKYTHTILIDGLCKAG 199
           ++ +  D+   T+L+DGL K G
Sbjct: 757 EKHWNSDEVAWTVLLDGLLKEG 778



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 112/245 (45%), Gaps = 2/245 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+N+M++G  K      A      + K G +P ++TY   I GLC+ GR   A  I
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609

Query: 68  LKELGDSGHAPNAITYTT-IMKCCFRNRKYKLGL-EILSAMKRKGYTFDGFGYCTVIAAF 125
             E+    + PN  TY++ I   C   R     +  +L+ +   G   +   Y T++   
Sbjct: 610 FHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR  EA   +  M   G+Q     Y  L+   CK  K+E+A  +   M+  GF+   
Sbjct: 670 CGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHL 729

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  LI  LCK   I+ A+   + M +  ++S+  A+  ++D L K+G+ D  + +   
Sbjct: 730 SDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHV 789

Query: 246 MEVKD 250
           ME ++
Sbjct: 790 MESRN 794



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 2/186 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNA--LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           P   T++ ++ GLC+    ++A    +   L  +G  P + TY  L+KGLC  GR   A 
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEAD 679

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   G  P+   Y  ++    +N K +  L I  +M   G+      Y  +I A 
Sbjct: 680 QLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICAL 739

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   ++EA    + M+      D V++  L++   KEG+ +    LL  ME +    + 
Sbjct: 740 CKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNF 799

Query: 186 YTHTIL 191
            T+ +L
Sbjct: 800 QTYVML 805



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  +L G CKN   ++AL +F  +   GF   L  Y  LI  LCK   +  A+
Sbjct: 690 LQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQ 749

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + + +     + + +T ++    +  +  L L++L  M+ +  T +          +
Sbjct: 750 CIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLN-------FQTY 802

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIV 151
           V + R   A D   ++     QL IV
Sbjct: 803 VMLARELSALDCAIKIPQISQQLGIV 828


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 140/310 (45%), Gaps = 15/310 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ ++N   K R    A  ++  +   G +P  +TYN +I G CK  RL  A 
Sbjct: 315 INPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAE 374

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G +P+  T+ T++      ++   G E+L  M   G   D   Y T+I  F
Sbjct: 375 HMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGF 434

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
             +G L  A D  +QM++ GV  DIV+ NTL++  C  GKL+ A  +   M+K       
Sbjct: 435 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 494

Query: 179 ----QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                G E D  T+ ILI GL   G    A    + M   G   N   Y+ +++ L K  
Sbjct: 495 SRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQS 554

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           ++D A  +F+SM  K    D  T++++V   CKA R+    +L     + G+        
Sbjct: 555 RLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYI 614

Query: 291 AVVDGLRHSG 300
            ++ G R  G
Sbjct: 615 TLIHGFRKVG 624



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++GL K+    +A  ++  +Q+ G  P+L TYN +I G C +GR   A+
Sbjct: 245 IKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQ 304

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +    PN +TY+ ++    + RK+    E+   M  +G   +   Y ++I  F
Sbjct: 305 RLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGF 364

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A      M T G   D+ ++NTLI+ YC   +++    LL EM + G   D 
Sbjct: 365 CKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADT 424

Query: 186 YTHTILI-----------------------------------DGLCKAGNIKGARLHLEY 210
            T+  LI                                   DGLC  G +K A    + 
Sbjct: 425 TTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKA 484

Query: 211 MNKI-----------GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYS 255
           M K            G + +++ YN ++  L  +GK   A  +++ M     V ++ TYS
Sbjct: 485 MQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYS 544

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM++ LCK  RL  A+++  S
Sbjct: 545 SMINGLCKQSRLDEATQMFDS 565



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF+ +L+GLC       AL +F  + +    P +VT+  L+ GLC+ GR+  A  +
Sbjct: 145 PDVVTFSTLLHGLCVEDRVSEALDLFHQMCR----PNVVTFTTLMNGLCREGRVVEAVAL 200

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-YCTVIAAFV 126
           L  + + G  PN ITY TI+    +       L +L  M+   +       Y  +I    
Sbjct: 201 LDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLW 260

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR  +A +   +M   G+  D+ +YN +I+ +C  G+   A  LL EM ++    +  
Sbjct: 261 KDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVV 320

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LI+   K      A    + M   G   N   YN ++D   K  ++D A ++F  M
Sbjct: 321 TYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVM 380

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             K    D FT+++++   C AKR+   ++LL    ++G+    +    ++ G 
Sbjct: 381 ATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGF 434



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 135/273 (49%), Gaps = 10/273 (3%)

Query: 8   PCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           PC   +FNI++   C       AL  F  + K GF P++VT++ L+ GLC   R+  A  
Sbjct: 109 PCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALD 168

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  ++      PN +T+TT+M    R  +    + +L  M   G   +   Y T++    
Sbjct: 169 LFHQMC----RPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 224

Query: 127 KIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           KIG    A + + +M     ++ ++V Y+ +I+   K+G+   A+ L  EM+++G   D 
Sbjct: 225 KIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDL 284

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  +IDG C +G    A+  L+ M +   + N+  Y+ +++   K+ K   A  +++ 
Sbjct: 285 FTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDE 344

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     + ++ TY+SM+   CK  RL +A  + 
Sbjct: 345 MLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMF 377



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 11/220 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-----------HGFVPELVTYN 49
           MI   + P   T N +L+GLC N    +AL MF+ +QK           +G  P++ TYN
Sbjct: 450 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYN 509

Query: 50  ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           ILI GL   G+   A  + KE+   G  PN ITY++++    +  +     ++  +M  K
Sbjct: 510 ILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSK 569

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
            ++ D   + T+++ + K GR+ +  +   +M   G+  D ++Y TLI+ + K G +  A
Sbjct: 570 SFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGA 629

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
             +  EM   G   D  T   ++  L     +K A   LE
Sbjct: 630 LDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLE 669



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 91/172 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI+++GL        A  +++ +   G VP  +TY+ +I GLCK  RL  A 
Sbjct: 501 VEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEAT 560

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +G    +P+ +T+ T++    +  +   GLE+   M R+G   D   Y T+I  F
Sbjct: 561 QMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGF 620

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
            K+G +  A D  ++M++ GV  D ++  +++ +   + +L+ A  +L++++
Sbjct: 621 RKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 139/295 (47%), Gaps = 11/295 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN ++  + +    D  + +++ +++     ++ ++NILIK  C   +L  A   
Sbjct: 75  PSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALST 134

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             ++   G  P+ +T++T++   C  +R  +  L++   M R         + T++    
Sbjct: 135 FGKITKLGFQPDVVTFSTLLHGLCVEDRVSE-ALDLFHQMCRPNVV----TFTTLMNGLC 189

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDK 185
           + GR+ EA   +++MV DG+Q + ++Y T+++  CK G   +A  LL +ME+    + + 
Sbjct: 190 REGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNV 249

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             ++ +IDGL K G    A      M + G   +L  YNC++D     G+   A  + + 
Sbjct: 250 VIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQE 309

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M  +    +  TYS++++   K ++   A +L    L  G+        +++DG 
Sbjct: 310 MLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGF 364



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 36/255 (14%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++  S   P+ I +  +M    R  +  L + +   M+RK    D + +  
Sbjct: 58  LEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI----------------------- 157
           +I  F    +L  A     ++   G Q D+V+++TL+                       
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPN 177

Query: 158 --------NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
                   N  C+EG++  A  LLD M + G + ++ T+  ++DG+CK G+   A   L 
Sbjct: 178 VVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLR 237

Query: 210 YMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
            M ++     N+  Y+ I+D L KDG+   A N++  M+ K    D FTY+ M+   C +
Sbjct: 238 KMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSS 297

Query: 265 KRLPSASKLLLSCLK 279
            R   A +LL   L+
Sbjct: 298 GRWSEAQRLLQEMLE 312



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 94/197 (47%), Gaps = 2/197 (1%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L++A D    MV       ++ +N L+ +  +  + +    L  +ME++   
Sbjct: 50  SGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIP 109

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           CD Y+  ILI   C    +  A      + K+GF  ++  ++ ++  L  + ++  A+++
Sbjct: 110 CDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDL 169

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           F  M   +  T++++++ LC+  R+  A  LL   ++ G++  +     +VDG+   G  
Sbjct: 170 FHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDT 229

Query: 303 REAKKIQSKIRMAKISH 319
             A  +  K  M ++SH
Sbjct: 230 VSALNLLRK--MEEMSH 244


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 165/358 (46%), Gaps = 45/358 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  ATF  +L+ LC+      A ++F G+Q  G  P    YN L+ G  KA  
Sbjct: 308 MVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKARE 367

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +E+  +G +P+ +T+  ++   ++  + +    +L  +   G   D   Y  
Sbjct: 368 VAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDV 427

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY-------------------- 160
           ++++    GRL EA   +++++  G+ L +V++N+LI  Y                    
Sbjct: 428 MVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCG 487

Query: 161 ---------------CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                          C++G L+ A +LL  M ++GF  +K  +T+L+DG  K  N++GA+
Sbjct: 488 FTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQ 547

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
              + M + G   +  A+  ++D L K G ++ A  VF  M     V ++F Y+S++  L
Sbjct: 548 FLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGL 607

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK--IQSKIRMAKI 317
           C   R+  A KL     + G+         ++DG     CRR   K  I++ + M +I
Sbjct: 608 CDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGF----CRRGQMKFAIETFLDMQRI 661



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 136/266 (51%), Gaps = 7/266 (2%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNA-LRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           CG  TP ++T N +L GLC+  +   A + ++R L+K GF    V Y +L+ G  K   L
Sbjct: 486 CG-FTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEK-GFPINKVAYTVLLDGYFKMNNL 543

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A+++ KE+ + G  P+A+ +T ++    +    +   E+   M   G+  + F Y ++
Sbjct: 544 EGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSL 603

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I      GR+ EA    ++M   G+  D  ++N +I+ +C+ G+++ A     +M++ G 
Sbjct: 604 IRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGL 663

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D +T  ILI G CKA ++ GA   +  M   G D ++  YN  +    +  K++ A+ 
Sbjct: 664 LPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVI 723

Query: 242 VFESM----EVKDSFTYSSMVHNLCK 263
           + + +     V D+ TY++M+  +C 
Sbjct: 724 ILDQLISAGIVPDTVTYNTMLSGICS 749



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   TFNI++ G  K    +++ R+ + L   G   +   Y++++  LC AGRL  A 
Sbjct: 383 VSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAM 442

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+EL + G   + + + +++    R        E    M R G+T       +++   
Sbjct: 443 KLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGL 502

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L+EA   + +M+  G  ++ V+Y  L++ Y K   LE A  L  EM+++G   D 
Sbjct: 503 CRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDA 562

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T LIDGL KAGN++ A      M+ IGF  N  AYN ++  L   G++  A+ + + 
Sbjct: 563 VAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKE 622

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M  K    D+FT++ ++   C+  ++  A +  L   + G+
Sbjct: 623 MRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGL 663



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT     FN ++    +    D A   +R + + GF P   T N L+ GLC+ G L+ AR
Sbjct: 453 LTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEAR 512

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  + + G   N + YT ++   F+    +    +   MK +G   D   +  +I   
Sbjct: 513 ILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGL 572

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G ++EA +   +M   G   +  +YN+LI   C  G++  A  L  EM ++G   D 
Sbjct: 573 SKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDT 632

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T  I+IDG C+ G +K A      M +IG   ++  +N ++    K   +  A  +   
Sbjct: 633 FTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNK 692

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M       D  TY++ +H  C+ +++  A  +L   + +G+
Sbjct: 693 MYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGI 733



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 34/243 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +++GL K    + A  +F  +   GFVP    YN LI+GLC  GR+  A  +
Sbjct: 560 PDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKL 619

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+   G   +  T+  I+    R  + K  +E    M+R G   D F +  +I  + K
Sbjct: 620 EKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCK 679

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              +  A + + +M + G+  DI +YNT ++ YC+  K+  A ++LD++   G   D  T
Sbjct: 680 AFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVT 739

Query: 188 HTILIDG----------------------------------LCKAGNIKGARLHLEYMNK 213
           +  ++ G                                   CK G  + A +  + + +
Sbjct: 740 YNTMLSGICSDILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGMPEKALIWGQKLRE 799

Query: 214 IGF 216
           I F
Sbjct: 800 ISF 802



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 137/308 (44%), Gaps = 41/308 (13%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +  ++F+ +   G  P  +T+N +I G C+  R+     +L  +     +P+ +T+  ++
Sbjct: 230 SVWKLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILI 289

Query: 88  K-CCFRNRKY----------KLGLE--------ILSAMKRKGYT------FDGFG----- 117
             CC   R +          + G+E        IL A+ R+G        FDG       
Sbjct: 290 NACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIA 349

Query: 118 -----YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
                Y T++  + K   + +A+   E+M T GV  D V++N L+  + K G++E +  L
Sbjct: 350 PNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRL 409

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           L ++   G   D   + +++  LC AG +  A   L+ + + G   ++ A+N ++    +
Sbjct: 410 LKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSR 469

Query: 233 DGKIDHAINVFESMEVKDSFTYS-----SMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
            G  D A   +  M V+  FT S     S++  LC+   L  A  LL   L+ G  I K 
Sbjct: 470 AGLEDKAFEAYRIM-VRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKV 528

Query: 288 AQKAVVDG 295
           A   ++DG
Sbjct: 529 AYTVLLDG 536



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 112/268 (41%), Gaps = 4/268 (1%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           N L++G    G    A  +L+ +   G  P   + T +++   R   Y    ++   M  
Sbjct: 181 NTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIF 240

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
           KG       +  +I  F +  R+      +  M       D+V++N LIN  C  G+   
Sbjct: 241 KGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWV 300

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A   L  M + G E    T T ++  LC+ GN+  AR   + +  +G   N   YN ++D
Sbjct: 301 AIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMD 360

Query: 229 RLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
              K  ++  A  ++E M       D  T++ +V    K  R+  + +LL   + SG+ +
Sbjct: 361 GYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFL 420

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             S    +V  L  +G   EA K+  ++
Sbjct: 421 DSSLYDVMVSSLCWAGRLDEAMKLLQEL 448



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I   + P T T+N ML+G+C +   D A+ +   L K GF+P ++T N+L+   CK G 
Sbjct: 728 LISAGIVPDTVTYNTMLSGICSD-ILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGM 786

Query: 61  LRTARWILKELGDSGHAPNAITY 83
              A    ++L +     + I+Y
Sbjct: 787 PEKALIWGQKLREISFGFDEISY 809



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 85/203 (41%), Gaps = 4/203 (1%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  F+ +G   EA + +  M   GV+  + S   L+ L  + G   + + L  +M  +
Sbjct: 182 TLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFK 241

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G      T   +I G C+   +      L  M K     ++  +N +++     G+   A
Sbjct: 242 GPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVA 301

Query: 240 INVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           I+    M    V+ S  T+++++H LC+   +  A KL       G+    +    ++DG
Sbjct: 302 IDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDG 361

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
              +    +A  +  ++R   +S
Sbjct: 362 YFKAREVAQASLLYEEMRTTGVS 384


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 169/323 (52%), Gaps = 11/323 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P    +N ++  +C+  Y D A  +   +   G+  +++TYNIL++ L   G+    
Sbjct: 189 NLQPDVFPYNSIIX-MCREGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAG 247

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             ++ ++   G   N +TY+ ++    R+ K + G+ +L  MK+KG   DG+ Y  +IA 
Sbjct: 248 FELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAV 307

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR+  A + ++ M++DG   DIV+YNT++   CK+ + + A  + +++ + G   +
Sbjct: 308 LCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPN 367

Query: 185 KYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
             ++  +   L  +G+ ++   + LE ++ +  D ++ AYN ++  L +DG +D AI + 
Sbjct: 368 ASSYNTVFSALGSSGHKVRALGMILEMLDXV--DPDVIAYNSLISCLCRDGMVDEAIELL 425

Query: 244 ESMEVKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
             ME++ S       +Y+ ++  LC+  R+  A+++L + +  G    ++    +++G+ 
Sbjct: 426 VDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIEGIG 485

Query: 298 HSGCRREAKKIQSK-IRMAKISH 319
             G   +A+ + +  + M  IS 
Sbjct: 486 FGGWLNDARDLATTLVNMDAISE 508



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 1/241 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   T+NI++  LC       AL     L K  F P +VTY ILI+     G +  A 
Sbjct: 120 FSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTILIEATLLQGGIDEAI 179

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+ +    P+   Y +I+  C R        E++S++  KGY  D   Y  ++ + 
Sbjct: 180 KLLDEMFEINLQPDVFPYNSIIXMC-REGYVDRAFEVISSISSKGYALDVITYNILLRSL 238

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+ +   + M  MV  G + ++V+Y+ LI+  C++GK+E    LL +M+K+G E D 
Sbjct: 239 XNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDG 298

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           Y +  LI  LCK G +  A   L+ M   G   ++  YN I+  L K  + D A+++FE 
Sbjct: 299 YCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEK 358

Query: 246 M 246
           +
Sbjct: 359 L 359



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 135/282 (47%), Gaps = 5/282 (1%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A ++   ++  GF P++VTYNILI  LC  G L  A     +L      P  +TYT ++
Sbjct: 107 HAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTILI 166

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           +           +++L  M       D F Y ++I    + G +  A + +  + + G  
Sbjct: 167 EATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSII-XMCREGYVDRAFEVISSISSKGYA 225

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
           LD+++YN L+     +GK EA + L+ +M  +G E +  T+++LI  LC+ G ++     
Sbjct: 226 LDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGL 285

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           L+ M K G + +   Y+ ++  L K+G++D AI V + M     V D   Y++++  LCK
Sbjct: 286 LKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCK 345

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            KR   A  +     + G     S+   V   L  SG +  A
Sbjct: 346 QKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRA 387



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 125/249 (50%), Gaps = 3/249 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T++++++ LC++   +  + + + ++K G  P+   Y+ LI  LCK GR+  A  +L 
Sbjct: 263 VVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLD 322

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+ + Y TI+ C  + ++    L I   +   G + +   Y TV +A    G
Sbjct: 323 VMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSG 382

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YT 187
               A   + +M+ D V  D+++YN+LI+  C++G ++ A  LL +ME +  EC     +
Sbjct: 383 HKVRALGMILEML-DXVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVS 441

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + I++ GLC+ G +  A   L  M   G   N   Y  +++ +G  G ++ A ++  ++ 
Sbjct: 442 YNIVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIEGIGFGGWLNDARDLATTLV 501

Query: 248 VKDSFTYSS 256
             D+ +  S
Sbjct: 502 NMDAISEHS 510



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    +N +L  LCK +  D AL +F  L + G  P   +YN +   L  +G 
Sbjct: 324 MISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGH 383

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG--FGY 118
              A  ++ E+ D    P+ I Y +++ C  R+      +E+L  M+ +          Y
Sbjct: 384 KVRALGMILEMLDXVD-PDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSY 442

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             V+    ++GR+ +AT+ +  MV  G   +  +Y  LI
Sbjct: 443 NIVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLI 481



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 5/155 (3%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +  A   +++M   G   DIV+YN LI   C  G L AA    +++ K+ F     T+TI
Sbjct: 105 IPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTI 164

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI+     G I  A   L+ M +I    ++  YN I+  + ++G +D A  V  S+  K 
Sbjct: 165 LIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSII-XMCREGYVDRAFEVISSISSKG 223

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
              D  TY+ ++ +L    +  +  +L+   +  G
Sbjct: 224 YALDVITYNILLRSLXNQGKWEAGFELMSDMVAKG 258


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFNI + GLCK    D A+R+   + + G  P++VTYN +I GLC+  R+  A   
Sbjct: 328 PNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEEC 387

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++ + G  PN  TY +I+    +         IL     KG+  D F YC+++  F +
Sbjct: 388 LHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQ 447

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G   +A    +  +  G++  I+ YNTLI   C++G +  A  L++EM ++G + D +T
Sbjct: 448 DGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWT 507

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + ++I+GLCK G +  A   +      G   ++  YN +VD   +  K+D AI +   M 
Sbjct: 508 YNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMW 567

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                 D  TY+++++ LCK  +     ++  +  + G
Sbjct: 568 SQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKG 605



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G   P   T+N +++G CK     +A R+ +     GF P+  TY  L+ G C+ G 
Sbjct: 391 MVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGD 450

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K+    G  P+ I Y T++K   +       L++++ M  KG   D + Y  
Sbjct: 451 PDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNL 510

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+G L +A   +   +T G   DI +YNTL++ YC++ KL++A  L++ M  QG
Sbjct: 511 IINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQG 570

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  L++GLCK    +      + M + G   N+  YN I++ L    K++ A+
Sbjct: 571 MTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAV 630

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           ++   M+ K    D  ++ +++   CK   L  A  L 
Sbjct: 631 DLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLF 668



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 133/281 (47%), Gaps = 5/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N ++ GLC+      AL++   + + G  P++ TYN++I GLCK G L  A 
Sbjct: 466 LRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDAN 525

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ +    G  P+  TY T++    R  K    +E+++ M  +G T D   Y T++   
Sbjct: 526 HLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGL 585

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  + +E  +  + M   G   +I++YNT+I   C   K+  A  LL EM+ +G   D 
Sbjct: 586 CKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDV 645

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA-YNCIVDRLGKDGKIDHAINVFE 244
            +   LI G CK G++ GA      M K    S+  A YN I+    +   +  A+ +F 
Sbjct: 646 VSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFS 705

Query: 245 SMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            M+      D++TY  ++   CK   +    K LL  ++ G
Sbjct: 706 EMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKG 746



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN +++ LCK  +   + R+F  + K G  P L T+NI I+GLCK G L  A 
Sbjct: 291 LCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAV 350

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +   G  P+ +TY T++    R  +     E L  M   G+  + F Y ++I  +
Sbjct: 351 RLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGY 410

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + +A   ++  V  G + D  +Y +L+N +C++G  + A  +  +   +G     
Sbjct: 411 CKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSI 470

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  LI GLC+ G I  A   +  M + G   ++  YN I++ L K G +  A ++   
Sbjct: 471 IVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGD 530

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
              K    D FTY+++V   C+  +L SA +L+      G+         +++GL  +  
Sbjct: 531 AITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAK 590

Query: 302 RREAKKI 308
             E  +I
Sbjct: 591 SEEVMEI 597



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 130/297 (43%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N ++N L +  Y + A +++  ++      ++ TY I IK  C+ GR   A  +
Sbjct: 188 PSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRL 247

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +   G   NA+ Y T++   +         E+   M       D   +  ++ A  K
Sbjct: 248 LRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCK 307

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + E+    ++++  GV  ++ ++N  I   CKEG L+ A  LL  + ++G   D  T
Sbjct: 308 KGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVT 367

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +I GLC+   +  A   L  M   GF+ N   YN I+D   K G +  A  + +   
Sbjct: 368 YNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAV 427

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            K    D FTY S+V+  C+      A  +    L  G+R        ++ GL   G
Sbjct: 428 FKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQG 484



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 36/233 (15%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++G C+    D+A+ +   +   G  P+++TYN L+ GLCK  +      I
Sbjct: 538 PDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEI 597

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K + + G APN ITY TI++    ++K    +++L  MK KG T D   + T+I  F K
Sbjct: 598 FKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCK 657

Query: 128 IGRL------------------------------------KEATDYMEQMVTDGVQLDIV 151
           +G L                                    K A     +M  +G   D  
Sbjct: 658 VGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNY 717

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           +Y  LI+ +CK G +   Y  L E  ++GF     T   +++ LC    ++ A
Sbjct: 718 TYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEA 770



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 45/228 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+N +LNGLCK   ++  + +F+ + + G  P ++TYN +I+ LC + ++  A 
Sbjct: 571 MTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAV 630

Query: 66  WILKELGDSGHAPNAI------------------------------------TYTTIMKC 89
            +L E+   G  P+ +                                    TY  I+  
Sbjct: 631 DLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISA 690

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
                  K+ L + S MK+ G   D + Y  +I  F K G + +   ++ + +  G    
Sbjct: 691 FSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPS 750

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---------FECDKYTH 188
           + ++  ++N  C E K++ A  ++  M ++          FE DK  H
Sbjct: 751 LTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTVNTIFEADKKGH 798



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 4/169 (2%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y   +  + + G+++EA D  E+M        + SYN ++N+  + G    A+ +   M+
Sbjct: 158 YVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMK 217

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            +  E D YT+TI I   C+ G    A   L  M  +G  SN  AY  +V    + G  D
Sbjct: 218 DKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDND 277

Query: 238 HAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            A  +F+ M       D  T++ +VH LCK   +  + +L    LK GV
Sbjct: 278 RARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGV 326



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D++  TAT+NI+++   +      ALR+F  ++K+G  P+  TY +LI G CK G +   
Sbjct: 676 DVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQG 735

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
              L E  + G  P+  T+  ++ C     K +  + I+  M +K    D
Sbjct: 736 YKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPD 785


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 149/299 (49%), Gaps = 5/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+N ++ G C     ++A+ +   +   G  P+ V+Y  ++  LC+  R++  R
Sbjct: 237 ITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVR 296

Query: 66  WILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +++++  D+   P+ +TY T++    ++      LE L   + +G+  D  GY  ++ +
Sbjct: 297 NLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNS 356

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   GR+  A + + +M+T G   D+V+Y  ++N  CK GK+E A  +L +M K G + +
Sbjct: 357 FCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPN 416

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++T L++GLC+ GN   AR  +    +  +  N   Y+ ++  L ++GK+  A +V  
Sbjct: 417 TVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVR 476

Query: 245 SMEVKDSFTYSS----MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            M  K  F        ++ +LC  +++  A K +  CL  G  +       V+ G   S
Sbjct: 477 EMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQS 535



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 136/286 (47%), Gaps = 2/286 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   T+  ++NGLCK    + A +M + + KHG  P  V+Y  L+ GLC+ G 
Sbjct: 373 MITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGN 432

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR ++    +    PNAITY+ +M    R  K     +++  M  KG+         
Sbjct: 433 SLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINL 492

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +     ++ EA  +ME+ +  G  ++ V++ T+I+ +C+   ++ A  LLD+M    
Sbjct: 493 LIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNN 552

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T T +ID L K G I+ A ++   M K G D     Y  ++ +  K G+++  I
Sbjct: 553 KHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELI 612

Query: 241 NVFESM--EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +   M    K    Y+ ++  LC      +A K++   L++  RI
Sbjct: 613 KLLGKMLSRSKCRTAYNQVIEKLCNFGNPEAADKVVGLVLRTASRI 658



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 130/308 (42%), Gaps = 39/308 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++ L K+ + D AL   R  ++ GF  + V Y+ ++   C  GR+  A+
Sbjct: 308 LFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAK 367

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--------------- 110
            I+ E+   G +P+ +TYT ++    +  K +   ++L  M + G               
Sbjct: 368 EIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGL 427

Query: 111 --------------------YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                               +T +   Y  V+    + G+L EA D + +M+T G     
Sbjct: 428 CQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTP 487

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V  N LI   C E K+  A   ++E   +G   +    T +I G C++ NI  A   L+ 
Sbjct: 488 VEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDD 547

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M       +   +  I+D LGK G+I+ A      M  K       TY +++H  CK  R
Sbjct: 548 MYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGR 607

Query: 267 LPSASKLL 274
           +    KLL
Sbjct: 608 VEELIKLL 615



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 5/302 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            + +ML  L K +    A R+ R + + G       +  ++    +AG+LR A  +L  +
Sbjct: 138 VYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMM 197

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  PN +   T +       K +  L  L  M+  G T +   Y  +I  +  + ++
Sbjct: 198 QKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQV 257

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTI 190
           + A + + +M   G   D VSY T++   C++ +++    L+++M K      D+ T+  
Sbjct: 258 EHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNT 317

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           L+  L K G+   A   L    + GF  +   Y+ IV+     G++D A  +   M  K 
Sbjct: 318 LVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKG 377

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D  TY+++V+ LCK  ++  A K+L    K G +    +  A+++GL   G   EA+
Sbjct: 378 CSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAR 437

Query: 307 KI 308
           ++
Sbjct: 438 EM 439



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 5/201 (2%)

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            +  V+ ++ + G+L+ A   +  M   GV+ +++  NT I++     KLE A   L+ M
Sbjct: 173 AFAHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERM 232

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           +  G   +  T+  LI G C    ++ A   +  M   G   +  +Y  ++  L +D +I
Sbjct: 233 QLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRI 292

Query: 237 DHAINVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
               N+ E M        D  TY+++VH L K      A + L    + G ++ K    A
Sbjct: 293 KEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSA 352

Query: 292 VVDGLRHSGCRREAKKIQSKI 312
           +V+     G    AK+I +++
Sbjct: 353 IVNSFCMQGRMDRAKEIVNEM 373



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 6/234 (2%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           L++ +C+    R+A W  K  GD      ++    +          ++ L+      R+ 
Sbjct: 72  LVREVCRLIERRSA-WNAKLEGDLRRLLRSLKPRQVCAVLQLQSDERIALDFFYWAGRQW 130

Query: 111 -YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
            Y  D   Y  ++    K    + A   +  MV  G+     ++  ++  Y + GKL  A
Sbjct: 131 RYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRNA 190

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             +L  M+K G E +       I  L  A  ++ A   LE M  +G   N+  YNC++  
Sbjct: 191 MQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKG 250

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
                +++HA+ +   M  K    D  +Y +++  LC+ KR+     L+   +K
Sbjct: 251 YCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVK 304


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 141/314 (44%), Gaps = 40/314 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T +FNI++    + R  D+A+  F  +++    P+L T+ IL+  LCKAG 
Sbjct: 145 MLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGM 204

Query: 61  LRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
              A  +  E+   G   P+   +T +++   + ++ K   E+   M++ G+  D   Y 
Sbjct: 205 DEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYN 264

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY--------- 170
           T+I    K G  +EA   ++ M+        V+Y  L+N  CK G LE A          
Sbjct: 265 TMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAAS 324

Query: 171 --------------------------LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
                                      L DEM + G+  D  THT++IDGLCK+GN + A
Sbjct: 325 GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQA 384

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHN 260
               E M + G   N+  Y  I+  L K G++ +A  + + M       DS TY  ++  
Sbjct: 385 AKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDG 444

Query: 261 LCKAKRLPSASKLL 274
            CK  RL  A++LL
Sbjct: 445 FCKLGRLDEAAQLL 458



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 10/312 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P    +N M++GL K  +   AL++   +     VP  VTY IL+  LCKAG L 
Sbjct: 254 CG-FPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLE 312

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  + + +  SG  PN++ YT+++    ++ + K    +   M   GY  D   +  +I
Sbjct: 313 RAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMI 372

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K G  ++A    E+M+  G + ++V+Y T+I    K G++  A+ ++  M   G  
Sbjct: 373 DGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCF 432

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI-N 241
            D  T+  L+DG CK G +  A   L+ ++K     NL+ Y+ +V  L   G +++ + +
Sbjct: 433 PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDD 492

Query: 242 VFE----SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +FE    + E  D     S++  LCK  RL  A ++    +  G +   +    +++GL 
Sbjct: 493 LFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL- 551

Query: 298 HSGCRREAKKIQ 309
              CR    +++
Sbjct: 552 ---CRSRENRVE 560



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 146/282 (51%), Gaps = 9/282 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+ I++N LCK    + A  +FR +   GF P  V Y  LI G  K+GR
Sbjct: 286 MLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGR 345

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +  E+ ++G+ P+ IT+T ++    ++  ++   +    M R G   +   Y T
Sbjct: 346 MKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    KIGR+  A   M+ M+  G   D V+Y  L++ +CK G+L+ A  LLDE++K  
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCS 465

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC--IVDRLGKDGKIDH 238
              +   ++ L+ GLC  G+++     L   +K   + NL+   C  I+  L K G++D 
Sbjct: 466 SSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAE-NLDPGLCCSIIVGLCKTGRLDE 524

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAK--RLPSASKLL 274
           A  +F+ M  +    D+ TY+ +++ LC+++  R+  A  LL
Sbjct: 525 ACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALL 566



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 4/266 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M  G + P  A    M+  L K +    A  +F  ++K GF P+ + YN +I GL KAG 
Sbjct: 216 MAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH 275

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L  +      P  +TY  ++    +    +   E+   M   G+  +   Y +
Sbjct: 276 AQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K GR+KEA    ++MV  G + D++++  +I+  CK G  E A    +EM + G
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T +I GL K G +  A   ++ M   G   +   Y C++D   K G++D A 
Sbjct: 396 CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAA 455

Query: 241 NVFESMEVKDSFT----YSSMVHNLC 262
            + + ++   S      YSS+V  LC
Sbjct: 456 QLLDELDKCSSSPNLQLYSSLVKGLC 481



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 142/351 (40%), Gaps = 43/351 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC---- 56
           MI     P + T+  +L+G CK    D A ++   L K    P L  Y+ L+KGLC    
Sbjct: 426 MIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGS 485

Query: 57  --------------------------------KAGRLRTARWILKELGDSGHAPNAITYT 84
                                           K GRL  A  I + +   G  P+A TY 
Sbjct: 486 VENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYN 545

Query: 85  TIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
            ++   C  R  + +    +L  ++  GY  D   Y  +     KIG +  A   +E+  
Sbjct: 546 ILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEAS 605

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
           + G   D+V+Y  L    C +G+++ A  L  EM +QG   D   +  +I+GL K   ++
Sbjct: 606 SRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLE 665

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT-----YSSM 257
            A    + M   G    +  Y  +V  L   G +D A + FE M  +         Y ++
Sbjct: 666 DACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDAL 725

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +H  CKA ++ +A KL    +  G         ++ DGL  SG   +A+++
Sbjct: 726 IHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQEL 776



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 38/270 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRY--TDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           M+     P   T+NI++NGLC++R    + A  +   L+  G++P+ VTY  L  GLCK 
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKI 591

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           G +  A  +L+E    G   + + YT +        +    + +   M R+G   D   Y
Sbjct: 592 GEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAY 651

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY------------------------- 153
           C +I   +K  +L++A  + ++M+  G +  + +Y                         
Sbjct: 652 CCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLA 711

Query: 154 -----------NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
                      + LI+ +CK  K++AA  L ++M  +G      T   L DGL ++G  +
Sbjct: 712 RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTE 771

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
            A+  L+ M   G   +   +  I+D L K
Sbjct: 772 KAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 13/265 (4%)

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           RW  ++   +G   +  TY  +M      + Y     I   M + G   + F +  +I +
Sbjct: 107 RWAGEQ---AGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRS 163

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-EC 183
           F +  R  +A    E M     + D+ ++  L++  CK G  E A+ +  EM   GF   
Sbjct: 164 FARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP 223

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D+  HT ++  L KA  +K AR     M K GF  +  AYN ++D L K G    A+ V 
Sbjct: 224 DRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           ++M     V    TY  +V++LCKA  L  A +L      SG R       +++ G   S
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343

Query: 300 GCRREA-----KKIQSKIRMAKISH 319
           G  +EA     + +++  R   I+H
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITH 368



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 24  RYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           + T  A+  FR   ++ GF  ++ TYN L+  L           I +E+  +G APN  +
Sbjct: 97  KVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFS 156

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
           +  +++   R R+    +     MKRK    D   +  ++    K G  ++A +   +M+
Sbjct: 157 FNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMM 216

Query: 143 TDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
             G V  D   +  ++    K  +++ A  +  +MEK GF  D   +  +IDGL KAG+ 
Sbjct: 217 AMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHA 276

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSM 257
           + A   L+ M           Y  +V+ L K G ++ A  +F  M       +S  Y+S+
Sbjct: 277 QEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSL 336

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           +H   K+ R+  A  L    +++G R        ++DGL  SG   +A K
Sbjct: 337 IHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 36/227 (15%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +  GLCK    D A++M       G+  ++V Y  L  GLC  G++  A  +
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSL 635

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G AP+A  Y  I+    + +K +   +    M  KG       Y  ++ A   
Sbjct: 636 FQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCH 695

Query: 128 IGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCK------------------------ 162
            G + EA    E M+  G  +  ++ Y+ LI+ +CK                        
Sbjct: 696 AGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAV 755

Query: 163 -----------EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
                       GK E A  LL EM   G      T T ++DGL K+
Sbjct: 756 TSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKS 802


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 133/274 (48%), Gaps = 4/274 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+N ++N LC     + A  +F+ +  HG +P   TYN +IK  C  G 
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGD 427

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  I  ++  +G +PN ITY T++    +       + +L  MK  G   D + Y  
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTE 487

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ F + G+L+ AT     M+  G+  + V+Y  +I+ Y    K++ A  L  +M + G
Sbjct: 488 LISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESG 547

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ ++I G  K  +I  A      M K G   N+  Y   +D L ++G+   A 
Sbjct: 548 NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAF 607

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSA 270
            +F  ME ++ F    TYSS+++ LC+  R   A
Sbjct: 608 KIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA 641



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 143/334 (42%), Gaps = 39/334 (11%)

Query: 1   MICGDLTPCTATFNIMLN-----------------------------------GLCKNRY 25
           M+   + P   TFN M+N                                   G C+N  
Sbjct: 193 MLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHN 252

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
            D A  MF  + K G  P  VTY+ LI GLC  GRL  A  +L+E+   G  P   TYT 
Sbjct: 253 LDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
            +            +E+L  MK++G   +   +  +I+   + G+ + A     +M+ DG
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG 372

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +    V+YN LIN  C EG+ E A+ +   M   G      T+  +I   C  G+I+ A 
Sbjct: 373 LVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAM 432

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
           +  + M K G   N+  YN ++    K G +++A+ + E M+      D++TY+ ++   
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +  +L  A+ L    ++ G+        A++DG
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 136/309 (44%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T++ ++NGLC     + A+ M   + + G  P + TY I +  LC AG    A  +
Sbjct: 270 PNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVEL 329

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G  PN  T+T ++    R+ K+++ + +   M   G       Y  +I     
Sbjct: 330 LGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCV 389

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR + A    + M++ G      +YN +I  +C  G ++ A ++ D+M K G   +  T
Sbjct: 390 EGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVIT 449

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G CK GN+  A   LE M   G   +   Y  ++    + GK++HA ++F  M 
Sbjct: 450 YNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMM 509

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 +  TY++++       ++  A  L    ++SG          ++ G   +    
Sbjct: 510 EHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSIS 569

Query: 304 EAKKIQSKI 312
           EA+    K+
Sbjct: 570 EAENFCGKM 578



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 125/274 (45%), Gaps = 39/274 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F  +L  L K    D A  M+  +   G  P L+T+N +I  LCK GR++ A+ I+  +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PNA TYT+++    RN    L   +                             
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMF---------------------------- 260

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
                  ++MV DG   + V+Y+TLIN  C EG+LE A  +L+EM ++G E   YT+TI 
Sbjct: 261 -------DRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIP 313

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           +  LC AG    A   L  M K G   N++ +  ++  L +DGK + AI ++  M     
Sbjct: 314 LVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGL 373

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           V  + TY+++++ LC   R  +A  +    L  G
Sbjct: 374 VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 4/202 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+   ++GLC+N  T  A ++F  ++K  + P L TY+ LI GLC+ GR
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGR 637

Query: 61  LRTARW--ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
              A    +L  L   G  PN  TYTT++K  C   R Y+   +++ +M++KG       
Sbjct: 638 AEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEAD-QLVVSMQKKGLQPSEEI 696

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y  ++    K  +++ A +    M T G QL +  Y  LI   CKE  +E A  +   M 
Sbjct: 697 YRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTML 756

Query: 178 KQGFECDKYTHTILIDGLCKAG 199
           ++ +  D+   T+L+DGL K G
Sbjct: 757 EKHWNSDEVVWTVLLDGLLKEG 778



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 2/245 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+N+M++G  K      A      + K G +P ++TY   I GLC+ GR   A  I
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609

Query: 68  LKELGDSGHAPNAITYTT-IMKCCFRNRKYKLGL-EILSAMKRKGYTFDGFGYCTVIAAF 125
             E+    + PN  TY++ I   C   R     +  +L+ +   G   +   Y T++   
Sbjct: 610 FHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR  EA   +  M   G+Q     Y  L+   CK  K+E+A  +   M+  GF+   
Sbjct: 670 CGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHL 729

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  LI  LCK   I+ A+   + M +  ++S+   +  ++D L K+G+ D  + +   
Sbjct: 730 SDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHV 789

Query: 246 MEVKD 250
           ME ++
Sbjct: 790 MESRN 794



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 2/186 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNA--LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           P   T++ ++ GLC+    ++A    +   L  +G  P + TY  L+KGLC  GR   A 
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEAD 679

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   G  P+   Y  ++    +N K +  L I  +M   G+      Y  +I A 
Sbjct: 680 QLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICAL 739

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   ++EA    + M+      D V +  L++   KEG+ +    LL  ME +    + 
Sbjct: 740 CKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNF 799

Query: 186 YTHTIL 191
            T+ +L
Sbjct: 800 QTYVML 805



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  +L G CKN   ++AL +F  +   GF   L  Y  LI  LCK   +  A+
Sbjct: 690 LQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQ 749

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + + +     + + +T ++    +  +  L L++L  M+ +  T +          +
Sbjct: 750 CIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLN-------FQTY 802

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIV 151
           V + R   A D   ++     QL IV
Sbjct: 803 VMLARELSALDCAIKIPQISQQLGIV 828


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 148/294 (50%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P  AT+N M+   C+   T  AL++ + ++++   P L+TY  L+ GL +AG ++ A+
Sbjct: 603 LEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAK 662

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++L E+  +G AP ++T+  +++ C  +R+  + LEI   M   G   D   Y T++   
Sbjct: 663 FLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVL 722

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G  + AT  +++M+T G+  D +++N LI  +CK   L+ A+ +  +M  QG   + 
Sbjct: 723 CCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNI 782

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L+ GL  AG I  A   L  M K+G + N   Y+ +V    K      A+ ++  
Sbjct: 783 ATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCE 842

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M     +  + TY+S++ +  KA  +  A +L     + GV    S    +++G
Sbjct: 843 MVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNG 896



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 152/315 (48%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++   CK +  D A  ++ G+ + G +P++VT + L+ GLC+ G+   A  +
Sbjct: 255 PNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYAL 314

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G APN +TY T++    + R+    L +L  M  +G   D   Y  ++    K
Sbjct: 315 FREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGK 374

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+++EA D +    +D +  + V+Y  L++ +C+ G ++ A  +L +ME++    +  T
Sbjct: 375 EGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVT 434

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
            + +I+GL K G +  A  ++  M   G   N+  Y  ++D   K    + A++V+  M 
Sbjct: 435 FSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDML 494

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 ++F   S+V+ L K   +  A  L     + G+ +       ++DGL  +G   
Sbjct: 495 HEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMP 554

Query: 304 EAKKIQSKIRMAKIS 318
            A K+  ++    +S
Sbjct: 555 AAFKVGQELMEKNLS 569



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 148/315 (46%), Gaps = 10/315 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRM----FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           T +  L GLC+      A  +     RG    G   ++V +N LI G CK   +  A  +
Sbjct: 152 TVSTALVGLCRTGLVGEAAALAEMLVRGRGIDGL--DVVGWNALIDGYCKVQDMAAALAV 209

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++ +   G A + + Y +++   F +      LE++  MK  G   +   Y  +I  + K
Sbjct: 210 VERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCK 269

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + EA    E MV  GV  D+V+ + L++  C++G+   AY L  EM+K G   +  T
Sbjct: 270 GKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVT 329

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---E 244
           +  LID L KA     +   L  M   G   +L  Y  ++DRLGK+GKI+ A +V    +
Sbjct: 330 YCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQ 389

Query: 245 SMEVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           S  +  +F TY+ +V   C+A  +  A ++LL   +  V        ++++GL   GC  
Sbjct: 390 SDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLG 449

Query: 304 EAKKIQSKIRMAKIS 318
           +A     K++ + I+
Sbjct: 450 KAADYMRKMKDSGIA 464



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 149/304 (49%), Gaps = 6/304 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ ++++  C+    D A ++   +++   +P +VT++ +I GL K G L  A
Sbjct: 392 NITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKA 451

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
              ++++ DSG APN +TY T++   F+ +  +  L++   M  +G   + F   +++  
Sbjct: 452 ADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNG 511

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G ++ A    + M   G+ LD V+Y TL++   K G + AA+ +  E+ ++    D
Sbjct: 512 LRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPD 571

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              + + I+ LC  G    A+  L+ M   G + +   YN ++    ++GK   A+ + +
Sbjct: 572 AVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLK 631

Query: 245 SME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+   +K +  TY+++V  L +A  +  A  LL     +G        + V+     SG
Sbjct: 632 EMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQAC--SG 689

Query: 301 CRRE 304
            RR 
Sbjct: 690 SRRP 693



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 132/282 (46%), Gaps = 4/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++ L K R    +L +   +   G V +LV Y  L+  L K G++  A+
Sbjct: 323 VAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAK 382

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+        PN +TYT ++    R        ++L  M+ K    +   + ++I   
Sbjct: 383 DVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGL 442

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK G L +A DYM +M   G+  ++V+Y TLI+ + K    EAA  +  +M  +G E + 
Sbjct: 443 VKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANN 502

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +    L++GL K GNI+GA    + M++ G   +   Y  ++D L K G +  A  V + 
Sbjct: 503 FVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQE 562

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +  K    D+  Y+  ++ LC   +   A   L     +G+ 
Sbjct: 563 LMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLE 604



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 148/347 (42%), Gaps = 39/347 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++G  K +  + AL ++R +   G        + L+ GL K G +  A 
Sbjct: 463 IAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAE 522

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K++ + G   + + YTT+M   F+        ++   +  K  + D   Y   I   
Sbjct: 523 ALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCL 582

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +G+  EA  ++++M   G++ D  +YNT+I   C+EGK   A  LL EM++   + + 
Sbjct: 583 CTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNL 642

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGF----------------------------- 216
            T+T L+ GL +AG +K A+  L  M   GF                             
Sbjct: 643 ITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHEL 702

Query: 217 ------DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
                  +++  YN +V  L   G   +A  V + M  +    D+ T+++++   CK+  
Sbjct: 703 MMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSH 762

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           L +A  +    L  G+    +    ++ GL  +G   EA  + S ++
Sbjct: 763 LDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMK 809



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 141/308 (45%), Gaps = 6/308 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++ L K    + A  + R  Q     P  VTY +L+   C+AG +  A  +L ++ 
Sbjct: 365 YTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQME 424

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +    PN +T+++I+    +        + +  MK  G   +   Y T+I  F K    +
Sbjct: 425 EKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQE 484

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A D    M+ +GV+ +    ++L+N   K G +E A  L  +M+++G   D   +T L+
Sbjct: 485 AALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLM 544

Query: 193 DGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           DGL K GN+  A ++  E M K     +   YN  ++ L   GK   A +  + M     
Sbjct: 545 DGLFKTGNMPAAFKVGQELMEK-NLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGL 603

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TY++M+   C+  +   A KLL    ++ ++        +V GL  +G  ++AK 
Sbjct: 604 EPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKF 663

Query: 308 IQSKIRMA 315
           + +++  A
Sbjct: 664 LLNEMASA 671



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 102/214 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T TFN ++ G CK+ + DNA  ++  +   G  P + T+N L+ GL  AGR
Sbjct: 738 MLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGR 797

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++   G  PN +TY  ++    +       L +   M  KG+      Y +
Sbjct: 798 IGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNS 857

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F K G + +A +   +M   GV     +Y+ L+N + K        +LL +M++ G
Sbjct: 858 LMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELG 917

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           F+  K T + +     + G    AR  L+ + K+
Sbjct: 918 FKPSKGTISSMSRAFSRPGMTGEARRLLKTLFKV 951



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 15/254 (5%)

Query: 42  VP-ELVTYNILIKGLCKAGRLRTARWILKELGDSGH----APNAITYTTIMKCCFRNRKY 96
           VP + +T N +I   C    LR A  +L+           A + ++Y   +         
Sbjct: 72  VPGDTLTLNSIILSYCSLRSLRPALSLLRSSSGPQSQSQVAADTVSYNIFLAALSEQGHG 131

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV----TDGVQLDIVS 152
           +L   +LS M ++G ++DG    T +    + G + EA    E +V     DG  LD+V 
Sbjct: 132 RLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLVRGRGIDG--LDVVG 189

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +N LI+ YCK   + AA  +++ M  QG   D   +  L+ G   +G+   A   +E M 
Sbjct: 190 WNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMK 249

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLP 268
             G + N+  Y  ++    K   +D A +++E M     + D  T S++V  LC+  +  
Sbjct: 250 ADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFS 309

Query: 269 SASKLLLSCLKSGV 282
            A  L     K GV
Sbjct: 310 EAYALFREMDKIGV 323



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 97/205 (47%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +N +++ LC +    NA  +   +   G  P+ +T+N LI G CK+  L  A  I  ++
Sbjct: 714 VYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQM 773

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN  T+ T++       +      +LS MK+ G   +   Y  ++  + K    
Sbjct: 774 LHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNK 833

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA     +MV+ G      +YN+L++ + K G +  A  L  EM+++G      T+ IL
Sbjct: 834 VEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDIL 893

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGF 216
           ++G  K  N    R+ L+ M ++GF
Sbjct: 894 LNGWSKLRNGIEVRILLKDMKELGF 918



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 96/232 (41%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M      P + T   +L     +R  D  L +   +   G   ++  YN L+  LC  G 
Sbjct: 668 MASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGM 727

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R A  +L E+   G AP+ IT+  ++    ++        I + M  +G + +   + T
Sbjct: 728 ARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNT 787

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      GR+ EA   +  M   G++ + ++Y+ L+  Y K+     A  L  EM  +G
Sbjct: 788 LLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKG 847

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           F     T+  L+    KAG +  A+     M + G       Y+ +++   K
Sbjct: 848 FIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSK 899


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 141/314 (44%), Gaps = 40/314 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T +FNI++    + R  D+A+  F  +++    P+L T+ IL+  LCKAG 
Sbjct: 145 MLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGM 204

Query: 61  LRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
              A  +  E+   G   P+   +T +++   + ++ K   E+   M++ G+  D   Y 
Sbjct: 205 DEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYN 264

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY--------- 170
           T+I    K G  +EA   ++ M+        V+Y  L+N  CK G LE A          
Sbjct: 265 TMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAAS 324

Query: 171 --------------------------LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
                                      L DEM + G+  D  THT++IDGLCK+GN + A
Sbjct: 325 GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQA 384

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHN 260
               E M + G   N+  Y  I+  L K G++ +A  + + M       DS TY  ++  
Sbjct: 385 AKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDG 444

Query: 261 LCKAKRLPSASKLL 274
            CK  RL  A++LL
Sbjct: 445 FCKLGRLDEAAQLL 458



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 10/312 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P    +N M++GL K  +   AL++   +     VP  VTY IL+  LCKAG L 
Sbjct: 254 CG-FPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLE 312

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  + + +  SG  PN++ YT+++    ++ + K    +   M   GY  D   +  +I
Sbjct: 313 RAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMI 372

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K G  ++A    E+M+  G + ++V+Y T+I    K G++  A+ ++  M   G  
Sbjct: 373 DGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCF 432

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI-N 241
            D  T+  L+DG CK G +  A   L+ ++K     NL+ Y+ +V+ L   G ++  + +
Sbjct: 433 PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDD 492

Query: 242 VFE----SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +FE    + E  D     S++  LCK  RL  A ++    +  G +   +    +++GL 
Sbjct: 493 LFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL- 551

Query: 298 HSGCRREAKKIQ 309
              CR    +++
Sbjct: 552 ---CRSRENRVE 560



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 147/288 (51%), Gaps = 7/288 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+ I++N LCK    + A  +FR +   GF P  V Y  LI G  K+GR
Sbjct: 286 MLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGR 345

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +  E+ ++G+ P+ IT+T ++    ++  ++   +    M R G   +   Y T
Sbjct: 346 MKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    KIGR+  A   M+ M+  G   D V+Y  L++ +CK G+L+ A  LLDE++K  
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCS 465

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC-IVDRLGKDGKIDHA 239
              +   ++ L++GLC  G+++     L   +K   ++      C I+  L K G++D A
Sbjct: 466 SSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEA 525

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAK--RLPSASKLLLSCLKSG 281
             +F+ M  +    D+ TY+ +++ LC+++  R+  A  LL    K G
Sbjct: 526 CRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVG 573



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 156/386 (40%), Gaps = 78/386 (20%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G   P   T+  ++ GL K     NA R+ +G+  HG  P+ VTY  L+ G CK GR
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A  +L EL     +PN   Y++++   C      K   ++    K    T D    C
Sbjct: 451 LDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCC 510

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK--EGKLEAAYLLLDEME 177
           ++I    K GRL EA    ++MV++G + D  +YN LIN  C+  E ++E A+ LL ++E
Sbjct: 511 SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 178 K-----------------------------------QGFECDKYTHTILIDGLCKAGNIK 202
           K                                   +G+  D   +T L  GLC  G + 
Sbjct: 571 KVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGK------------------------------ 232
            A    + M + G   +  AY CI++ L K                              
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALV 690

Query: 233 -----DGKIDHAINVFESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 G +D A + FESM  +         Y +++H  CKA ++ +A KL    +  G 
Sbjct: 691 QALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750

Query: 283 RILKSAQKAVVDGLRHSGCRREAKKI 308
                   ++ DGL  SG   +A+++
Sbjct: 751 VPTAVTSASLFDGLVRSGKTEKAQEL 776



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 4/266 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M  G + P  A    M+  L K +    A  +F  ++K GF P+ + YN +I GL KAG 
Sbjct: 216 MAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH 275

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L  +      P  +TY  ++    +    +   E+   M   G+  +   Y +
Sbjct: 276 AQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K GR+KEA    ++MV  G + D++++  +I+  CK G  E A    +EM + G
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T +I GL K G +  A   ++ M   G   +   Y C++D   K G++D A 
Sbjct: 396 CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAA 455

Query: 241 NVFESMEVKDSFT----YSSMVHNLC 262
            + + ++   S      YSS+V+ LC
Sbjct: 456 QLLDELDKCSSSPNLQLYSSLVNGLC 481



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 38/270 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRY--TDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           M+     P   T+NI++NGLC++R    + A  +   L+K G++P+ VTY  L  GLCK 
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKI 591

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           G +  A  +L+E    G   + + YT +        +    + +   M R+G   D   Y
Sbjct: 592 GEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAY 651

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY------------------------- 153
           C +I   +K+ +L++A  + ++M+  G +  + +Y                         
Sbjct: 652 CCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLA 711

Query: 154 -----------NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
                      + LI+ +CK  K++AA  L ++M  +G      T   L DGL ++G  +
Sbjct: 712 RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTE 771

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
            A+  L+ M   G   +   +  I+D L K
Sbjct: 772 KAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 13/265 (4%)

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           RW  ++   +G   +  TY  +M      + Y     I   M + G   + F +  +I +
Sbjct: 107 RWAGEQ---AGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRS 163

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-EC 183
           F +  R  +A    E M     + D+ ++  L++  CK G  E A+ +  EM   GF   
Sbjct: 164 FARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP 223

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D+  HT ++  L KA  +K AR     M K GF  +  AYN ++D L K G    A+ V 
Sbjct: 224 DRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           ++M  K       TY  +V++LCKA  L  A +L      SG R       +++ G   S
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343

Query: 300 GCRREA-----KKIQSKIRMAKISH 319
           G  +EA     + +++  R   I+H
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITH 368



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 24  RYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           + T  A+  FR   ++ GF  ++ TYN L+  L           I +E+  +G APN  +
Sbjct: 97  KVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFS 156

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
           +  +++   R R+    +     MKRK    D   +  ++    K G  ++A +   +M+
Sbjct: 157 FNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMM 216

Query: 143 TDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
             G V  D   +  ++    K  +++ A  +  +MEK GF  D   +  +IDGL KAG+ 
Sbjct: 217 AMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHA 276

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSM 257
           + A   L+ M           Y  +V+ L K G ++ A  +F  M       +S  Y+S+
Sbjct: 277 QEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSL 336

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           +H   K+ R+  A  L    +++G R        ++DGL  SG   +A K
Sbjct: 337 IHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 36/227 (15%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +  GLCK    D A++M       G+  ++V Y  L  GLC  G++  A  +
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSL 635

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G AP+A  Y  I+    + +K +   +    M  KG       Y  ++ A   
Sbjct: 636 FQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCH 695

Query: 128 IGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCK------------------------ 162
            G + EA    E M+  G  +  ++ Y+ LI+ +CK                        
Sbjct: 696 AGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAV 755

Query: 163 -----------EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
                       GK E A  LL EM   G      T T ++DGL K+
Sbjct: 756 TSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKS 802


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 9/317 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+   L P   T   +++GLCK  +T+ A R+F  L K   + P + TY ++I G C+ G
Sbjct: 169 MVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREG 228

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +L  + + G  PN  TYTT++    +   +    E+++ MK++G+  + + Y 
Sbjct: 229 KLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYN 288

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            VI  F K G+++EA   +    + G++ D ++Y  LI  +CK+G +  A  L D M + 
Sbjct: 289 AVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVEN 348

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D   +T LI   C+   ++ ++   +    IG     + Y  ++    K G+   A
Sbjct: 349 GCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLA 408

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VFE M       DS TY +++  LCK  RL  A  L    L    R++      V   
Sbjct: 409 LRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDK--RLVPCEVTRVT-- 464

Query: 296 LRHSGCRREAKKIQSKI 312
           L    CRRE   I   +
Sbjct: 465 LTFEYCRREKTSIAVSV 481



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 5/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    ++P    F  ++   C+    +    +   + ++GF  +  T  ++++ LC+ GR
Sbjct: 64  MTRAGVSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGR 123

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +      + + ++G  PN + YT  +    + R  K    +L  M  +G   + + + T
Sbjct: 124 FKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT 183

Query: 121 VIAAFVKIGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I    KIG  + A   +++ + +   + ++ +Y  +I  YC+EGKL  A +LL  M +Q
Sbjct: 184 LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQ 243

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + +  T+T LI G CK G+   A   +  M + GF  N+  YN ++D   K GKI  A
Sbjct: 244 GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA 303

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             V      +    D  TY+ ++   CK   +  A  L    +++G
Sbjct: 304 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENG 349



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
            A  M   ++ HG    + T N +++   + G    AR +   +  +G +P    +  ++
Sbjct: 21  EAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFGALV 80

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
             C R  K +    +L+AM R G++ D      V+ +  + GR K+ +++  +M+  G  
Sbjct: 81  VVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTP 140

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RL 206
            ++V+Y   I+  CK   ++ A+ +L+EM  +G + + YTHT LIDGLCK G  + A RL
Sbjct: 141 PNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRL 200

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVKDSFTYSSMVHNLC 262
            L+ +    +  N+  Y  ++    ++GK+  A    + + E     ++ TY++++   C
Sbjct: 201 FLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHC 260

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
           K      A +L+    + G         AV+DG    G  +EA K+   +RMA
Sbjct: 261 KGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKV---LRMA 310



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 113/268 (42%), Gaps = 5/268 (1%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           ++    +AGRL  A  ++ E+   G      T   +++       +    ++   M R G
Sbjct: 9   MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 68

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
            +    G+  ++    + G+++E    +  M   G  LD  +   ++   C++G+ +   
Sbjct: 69  VSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 128

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
                M + G   +   +T  IDGLCK   +K A   LE M   G   N+  +  ++D L
Sbjct: 129 EFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 188

Query: 231 GKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
            K G  + A  +F  +    S+     TY+ M+   C+  +L  A  LL+  ++ G++  
Sbjct: 189 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 248

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            +    ++ G    G    A ++ +K++
Sbjct: 249 TNTYTTLIGGHCKGGSFDRAFELMNKMK 276



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 3/198 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ I++   CK  +   AL +F  + ++G  P++  Y  LI   C+  ++  ++    + 
Sbjct: 321 TYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKC 380

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   TYT+++    +  +  L L +   M + G   D   Y  +I+   K  RL
Sbjct: 381 LMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRL 440

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA    E M+   +    V+  TL   YC+  K   A  +LD ++K+      +T  ++
Sbjct: 441 EEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQ---QVHTVDVV 497

Query: 192 IDGLCKAGNIKGARLHLE 209
           +  L   G++  A L L+
Sbjct: 498 VRKLSALGDVDAASLFLK 515



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  M+ G CK   +  ALR+F  + ++G   + +TY  LI GLCK  RL  A+
Sbjct: 385 LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAK 444

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM--KRKGYTFDGFGYCTVIA 123
            + + + D    P  +T  T+     R  K  + + +L  +  +++ +T D      V+ 
Sbjct: 445 ALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQVHTVD-----VVVR 499

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
               +G +  A+ ++++++ +   +D  +Y   IN  C E      Y L  EM ++
Sbjct: 500 KLSALGDVDAASLFLKKVLDEDYAVDHATYTGFIN-SCYENN---RYALASEMSEK 551



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L PC  T   +    C+   T  A+ +   L K     ++ T +++++ L   G +  A 
Sbjct: 455 LVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKR---QQVHTVDVVVRKLSALGDVDAAS 511

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
             LK++ D  +A +  TYT  +  C+ N +Y L  E+     +K  +F
Sbjct: 512 LFLKKVLDEDYAVDHATYTGFINSCYENNRYALASEMSEKFSKKISSF 559


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 6/310 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFNIM++GL K  Y  +AL +   +    F P ++TY ILI G CK GR
Sbjct: 368 MVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGR 427

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  I+  +   G + N + Y  ++    ++   +  L++   M  KG   D + + +
Sbjct: 428 LEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNS 487

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  +++EA      M  +GV  + V+YNTL++ +     ++ A+ L+DEM  +G
Sbjct: 488 LINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRG 547

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D  T+  LI  LCK G + KG  L  E + K G    + + N ++  L + GK++ A
Sbjct: 548 CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGK-GIFPTIISCNILISGLCRTGKVNDA 606

Query: 240 INVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +   + M       D  TY+S+++ LCK   +  AS L       G+R        ++  
Sbjct: 607 LKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISR 666

Query: 296 LRHSGCRREA 305
             H G   +A
Sbjct: 667 HCHEGMFNDA 676



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 163/351 (46%), Gaps = 42/351 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TF +++  LC     D+A  + R + KHG VP  V Y  LI  LC+  R
Sbjct: 196 MLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNR 255

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG--FGY 118
           +  A  +L+++      P+  T+  ++    R  +     ++L  M  +G++ D   +GY
Sbjct: 256 VSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGY 315

Query: 119 C-----------------------------TVIAAFVKIGRLKEATDYM-EQMVTDGVQL 148
                                         T+I+ +V  GR +EA D +   MV  G + 
Sbjct: 316 LMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEP 375

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D  ++N +I+   K+G L +A  LL+EM  + FE +  T+TILI+G CK G ++ A   +
Sbjct: 376 DAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIV 435

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M+  G   N   YNC++  L KDG I+ A+ +F  M  K    D +T++S+++ LCK 
Sbjct: 436 NSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKN 495

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
            ++  A  L       GV     A     + L H+   R++  IQ   ++ 
Sbjct: 496 HKMEEALSLYHDMFLEGV----IANTVTYNTLVHAFLMRDS--IQQAFKLV 540



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 2/226 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++NGLCKN   + AL ++  +   G +   VTYN L+        ++ A  +
Sbjct: 480 PDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKL 539

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV-IAAFV 126
           + E+   G   + ITY  ++K   +    + GL +   M  KG  F     C + I+   
Sbjct: 540 VDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKG-IFPTIISCNILISGLC 598

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G++ +A  +++ M+  G+  DIV+YN+LIN  CK G ++ A  L ++++ +G   D  
Sbjct: 599 RTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAI 658

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           T+  LI   C  G    A L L      GF  N   ++ +++ + K
Sbjct: 659 TYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVK 704



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 9/281 (3%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P   +YN+++  L      R A  +  ++   G +P   T+  +MK      +      +
Sbjct: 168 PTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSL 227

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  M + G   +   Y T+I A  +  R+ EA   +E M     + D+ ++N +I+  C+
Sbjct: 228 LRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCR 287

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
            G++  A  LLD M  +GF  D  T+  L+ GLC+ G +  AR     +NKI  + N   
Sbjct: 288 AGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEAR---ALLNKIP-NPNTVL 343

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEV-----KDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
           YN ++      G+ + A ++  +  V      D++T++ M+  L K   L SA +LL   
Sbjct: 344 YNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEM 403

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           +             +++G    G   EA +I + +    +S
Sbjct: 404 VAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLS 444



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   LTP   T+N ++NGLCK  +   A  +F  LQ  G  P+ +TYN LI   C  G 
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGM 672

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM 87
              A  +L +  DSG  PN +T++ ++
Sbjct: 673 FNDACLLLYKGVDSGFIPNEVTWSILI 699


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 125/240 (52%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +++FNI+++G CK R    A ++   ++KHGF P++V+Y+  I   C+    R    +  
Sbjct: 226 SSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFD 285

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ + G  PN ITYTT+M    + R+    LE+   MKR G   D   Y ++I    + G
Sbjct: 286 EMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSG 345

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+K+A D  E M   GV  ++  YNT+I+  C   +  +A  LL+ ME    + D  T+ 
Sbjct: 346 RIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYA 405

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            L+   C+  +IK  +  L +M K     +L  Y  +V+   ++GK++HA   F+   +K
Sbjct: 406 PLLKMCCRRKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLK 465



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 13/247 (5%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKEL--GDSGHAPNAITYTTIMKCCFRNRKYKLGL 100
           PEL  Y I I G  K   L    W L E   G +G+   A T + +M+   + RKYK  +
Sbjct: 122 PELYDYMIDILGKFKKFSLM---WSLVEQMKGLNGYVSLA-TASKVMRRLAKARKYKDAI 177

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA-TDYMEQMVTDGVQLDIVSYNTLINL 159
           ++   +++ G + D      ++ A VK G +++A + ++E    D + LD  S+N LI+ 
Sbjct: 178 DVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLE--FKDCITLDSSSFNILIHG 235

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           YCK      A  +++EMEK GF  D  +++  I   C+  + +      + M + G   N
Sbjct: 236 YCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPN 295

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
           +  Y  ++  LGK  +++ A+ V+E M+    + DS  YSS+++ L ++ R+  A  +  
Sbjct: 296 VITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFE 355

Query: 276 SCLKSGV 282
              K GV
Sbjct: 356 DMEKQGV 362


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 9/317 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+   L P   T   +++GLCK  +T+ A R+F  L K   + P + TY ++I G C+ G
Sbjct: 277 MVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREG 336

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +L  + + G  PN  TYTT++    +   +    E+++ MK++G+  + + Y 
Sbjct: 337 KLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYN 396

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            VI  F K G+++EA   +    + G++ D ++Y  LI  +CK+G +  A  L D M + 
Sbjct: 397 AVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVEN 456

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D   +T LI   C+   ++ ++   +    IG     + Y  ++    K G+   A
Sbjct: 457 GCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLA 516

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VFE M       DS TY +++  LCK  RL  A  L    L    R++      V   
Sbjct: 517 LRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDK--RLVPCEVTRVT-- 572

Query: 296 LRHSGCRREAKKIQSKI 312
           L    CRRE   I   +
Sbjct: 573 LTFEYCRREKTSIAVSV 589



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +F  ++   C+    +    +   + ++GF  +  T  ++++ LC+ GR +     
Sbjct: 179 PDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEF 238

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + + ++G  PN + YT  +    + R  K    +L  M  +G   + + + T+I    K
Sbjct: 239 FRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCK 298

Query: 128 IGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           IG  + A   +++ + +   + ++ +Y  +I  YC+EGKL  A +LL  M +QG + +  
Sbjct: 299 IGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTN 358

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LI G CK G+   A   +  M + GF  N+  YN ++D   K GKI  A  V    
Sbjct: 359 TYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMA 418

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             +    D  TY+ ++   CK   +  A  L    +++G
Sbjct: 419 TSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENG 457



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 8/293 (2%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
            A  M   ++ HG    + T N +++   + G    AR +   +  +G  P+  ++  ++
Sbjct: 129 EAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALV 188

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
             C R  K +    +L+AM R G++ D      V+ +  + GR K+ +++  +M+  G  
Sbjct: 189 VVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTP 248

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RL 206
            ++V+Y   I+  CK   ++ A+ +L+EM  +G + + YTHT LIDGLCK G  + A RL
Sbjct: 249 PNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRL 308

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVKDSFTYSSMVHNLC 262
            L+ +    +  N+  Y  ++    ++GK+  A    + + E     ++ TY++++   C
Sbjct: 309 FLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHC 368

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
           K      A +L+    + G         AV+DG    G  +EA K+   +RMA
Sbjct: 369 KGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKV---LRMA 418



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 3/198 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ I++   CK  +   AL +F  + ++G  P++  Y  LI   C+  ++  ++    + 
Sbjct: 429 TYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKC 488

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   TYT+++    +  +  L L +   M + G   D   Y  +I+   K  RL
Sbjct: 489 LMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRL 548

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA    E M+   +    V+  TL   YC+  K   A  +LD ++K+      +T  ++
Sbjct: 549 EEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQ---QVHTVDVV 605

Query: 192 IDGLCKAGNIKGARLHLE 209
           +  L   G++  A L L+
Sbjct: 606 VRKLSALGDVDAASLFLK 623



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 84/222 (37%), Gaps = 59/222 (26%)

Query: 118 YCTVIAAFV--------------------KIGRLKEATDYMEQMVTDGVQL--------- 148
           Y T   AFV                    + GRL EA D + +M + G+ L         
Sbjct: 94  YVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVL 153

Query: 149 --------------------------DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
                                     D  S+  L+ + C+EGK+E    LL  M + GF 
Sbjct: 154 RVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFS 213

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T T+++  LC+ G  K        M + G   N+  Y   +D L K   +  A +V
Sbjct: 214 LDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHV 273

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            E M  +    + +T+++++  LCK      A +L L  +KS
Sbjct: 274 LEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKS 315



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  M+ G CK   +  ALR+F  + ++G   + +TY  LI GLCK  RL  A+
Sbjct: 493 LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAK 552

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM--KRKGYTFDGFGYCTVIA 123
            + + + D    P  +T  T+     R  K  + + +L  +  +++ +T D      V+ 
Sbjct: 553 ALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQVHTVD-----VVVR 607

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
               +G +  A+ ++++++ +   +D  +Y   IN  C E      Y L  EM ++
Sbjct: 608 KLSALGDVDAASLFLKKVLDEDYAVDHATYTGFIN-SCYENN---RYALASEMSEK 659



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L PC  T   +    C+   T  A+ +   L K     ++ T +++++ L   G +  A 
Sbjct: 563 LVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKR---QQVHTVDVVVRKLSALGDVDAAS 619

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
             LK++ D  +A +  TYT  +  C+ N +Y L  E+     +K  +F
Sbjct: 620 LFLKKVLDEDYAVDHATYTGFINSCYENNRYALASEMSEKFSKKISSF 667


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 152/305 (49%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ +++ LC++   D A+ +F+ ++  G    +VTYN L++GLCKAG+      +LK++
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PN IT+  ++    +  K +   E+   M  +G + +   Y T++  +    RL
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + ++ MV +    DIV++ +LI  YC   +++    +   + K+G   +  T++IL
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           + G C++G IK A    + M   G   ++  Y  ++D L  +GK++ A+ +FE ++    
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 252 ----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
                 Y++++  +CK  ++  A  L  S    GV+        ++ GL   G   EA  
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 308 IQSKI 312
           +  K+
Sbjct: 530 LLRKM 534



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N  C+   T  A  +   + K G+ P+  T+N LIKGL   G++  A  ++  +
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++G  P+ +TY +I+    R+    L L++L  M+ +    D F Y T+I +  + G +
Sbjct: 185 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A    ++M T G++  +V+YN+L+   CK GK     LLL +M  +    +  T  +L
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           +D   K G ++ A    + M   G   N+  YN ++D      ++  A N+ + M     
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             D  T++S++   C  KR+    K+  +  K G+         +V G   SG
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 148/300 (49%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFN++L+   K      A  +++ +   G  P ++TYN L+ G C   R
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L  +  +  +P+ +T+T+++K     ++   G+++   + ++G   +   Y  
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G++K A +  ++MV+ GV  D+++Y  L++  C  GKLE A  + ++++K  
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +     +T +I+G+CK G ++ A      +   G   N+  Y  ++  L K G +  A 
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 528

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME      +  TY++++    +   L +++KL+      G     S+ K V+D L
Sbjct: 529 ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 157/321 (48%), Gaps = 18/321 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TFN ++ GL        A+ +   + ++G  P++VTYN ++ G+C++G    A  +
Sbjct: 156 PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDL 215

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ +     +  TY+TI+    R+      + +   M+ KG       Y +++    K
Sbjct: 216 LRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCK 275

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +    ++ MV+  +  +++++N L++++ KEGKL+ A  L  EM  +G   +  T
Sbjct: 276 AGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIIT 335

Query: 188 HTILIDGLCKAGNIKGARLHLEYM--NK-----IGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  L+DG C    +  A   L+ M  NK     + F S ++ Y C+V R      +D  +
Sbjct: 336 YNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY-CMVKR------VDDGM 388

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            VF ++     V ++ TYS +V   C++ ++  A +L    +  GV         ++DGL
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 297 RHSGCRREAKKIQSKIRMAKI 317
             +G   +A +I   ++ +K+
Sbjct: 449 CDNGKLEKALEIFEDLQKSKM 469



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 129/271 (47%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+   + + + +  +  L   + L+ +G    + T NI+I   C+  +   A  +
Sbjct: 86  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+  T+ T++K  F   K    + ++  M   G   D   Y +++    +
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A D + +M    V+ D+ +Y+T+I+  C++G ++AA  L  EME +G +    T
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+ GLCKAG      L L+ M       N+  +N ++D   K+GK+  A  +++ M 
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    +  TY++++   C   RL  A+ +L
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNML 356



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 4/260 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F+ + +   +P LV ++     + +  +        K+L  +G A N  T   +
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  K      +L  + + GY  D   + T+I      G++ EA   +++MV +G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q D+V+YN+++N  C+ G    A  LL +ME++  + D +T++ +ID LC+ G I  A  
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             + M   G  S++  YN +V  L K GK +    + + M     V +  T++ ++    
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 263 KAKRLPSASKLLLSCLKSGV 282
           K  +L  A++L    +  G+
Sbjct: 310 KEGKLQEANELYKEMITRGI 329



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 4/200 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T++I++ G C++     A  +F+ +  HG +P+++TY IL+ GLC  G+L  A  I ++
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           L  S      + YTTI++   +  K +    +  ++  KG   +   Y  +I+   K G 
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA   + +M  DG   +  +YNTLI  + ++G L A+  L++EM+  GF  D  +  +
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583

Query: 191 LIDGLCKAGNIKGARLHLEY 210
           +ID L  A      RL L Y
Sbjct: 584 VIDMLLSAMK----RLTLRY 599


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 159/347 (45%), Gaps = 45/347 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV------------------- 46
           + P T TF+I    LC+    D AL M R + +HG VP+ V                   
Sbjct: 168 VPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAA 227

Query: 47  ----------------TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-C 89
                           T+N ++ GLC  GRLR A  ++  +   G  PNAITY  ++K  
Sbjct: 228 TLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGL 287

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
           C  ++     +E    M  +    +   + TVI   +  G+LKEA +  E M + G   D
Sbjct: 288 CLASQ-----VEEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPD 342

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
             +Y+ LI+  CK G+L +A  LL EME +GF     T+TIL+   C+ G     R  LE
Sbjct: 343 AHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLE 402

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            M+  G   NLE YN ++  + KD ++D A+   + M+ +    D  TY++++++LC   
Sbjct: 403 VMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNN 462

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           ++  A  L  + L  GV         ++  L  +G  ++A  + + +
Sbjct: 463 QMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDM 509



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 140/282 (49%), Gaps = 6/282 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T+ I+L+  C+N   DN   M   +   G    L  YN +I  +CK  R+  A 
Sbjct: 374 FAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAM 433

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             ++E+   G+ P+  TY TI+     N + +    +   +  +G   +   Y T+I A 
Sbjct: 434 RFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHAL 493

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++ G  ++A      MV  G  LDIVSYN LI   C++G ++ + +LL EM ++G + + 
Sbjct: 494 LRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNN 553

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            ++ +LI  LCK   ++ A  L  E +N+     ++  YN +++ L K G +  A+N+ E
Sbjct: 554 VSYNLLISELCKTRRVRDALELSKEMLNQ-ELTPDIVTYNTLINGLCKMGWMHAALNLLE 612

Query: 245 SMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +  +D      TY+ ++   CKA+ L  AS LL   + SG+
Sbjct: 613 KLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGI 654



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 131/249 (52%), Gaps = 4/249 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A  ++  +   G  P+  TY+ILI GLCK GRL +A  +L+E+ D G AP+ +TYT ++ 
Sbjct: 327 AAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLH 386

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              RN  +     +L  M  KG + +  GY  +I A  K  R+ +A  +M++M + G + 
Sbjct: 387 SFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKP 446

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DI +YNT+I   C   ++E A  L + +  +G   +  T+  LI  L + G+ + A    
Sbjct: 447 DICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLA 506

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M   G   ++ +YN ++  L +DG +D +I +   M  K    ++ +Y+ ++  LCK 
Sbjct: 507 NDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKT 566

Query: 265 KRLPSASKL 273
           +R+  A +L
Sbjct: 567 RRVRDALEL 575



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 35/250 (14%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N M+  +CK+R  D+A+R  + ++  G+ P++ TYN +I  LC   ++  A ++ + L 
Sbjct: 416 YNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLL 475

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEI------------------------------ 102
             G   NAITY T++    RN  ++  + +                              
Sbjct: 476 HEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVD 535

Query: 103 -----LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
                LS M  KG   +   Y  +I+   K  R+++A +  ++M+   +  DIV+YNTLI
Sbjct: 536 RSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLI 595

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           N  CK G + AA  LL+++  +    D  T+ ILI   CKA  +  A + L      G  
Sbjct: 596 NGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGIT 655

Query: 218 SNLEAYNCIV 227
            N   +  +V
Sbjct: 656 PNERTWGIMV 665



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 132/313 (42%), Gaps = 47/313 (15%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN +++GLC       A R+   +   G VP  +TY  L+KGLC A ++  AR +L   
Sbjct: 244 TFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTML--- 300

Query: 72  GDSGHAP--NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
              G  P  N + + T++  C  + K K   E+   M  KG   D   Y  +I    K+G
Sbjct: 301 ---GRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLG 357

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG------------------------- 164
           RL  A   + +M   G    IV+Y  L++ +C+ G                         
Sbjct: 358 RLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYN 417

Query: 165 ----------KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
                     +++ A   + EM+ QG++ D  T+  +I  LC    ++ A    E +   
Sbjct: 418 GMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHE 477

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           G  +N   YN ++  L ++G    AI++   M +     D  +Y+ ++  LC+   +  +
Sbjct: 478 GVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRS 537

Query: 271 SKLLLSCLKSGVR 283
             LL    + G++
Sbjct: 538 IMLLSEMAEKGIK 550



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 97/186 (52%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++ L +N    +A+ +   +  HG   ++V+YN LIK LC+ G +  +  +L E+
Sbjct: 485 TYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEM 544

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PN ++Y  ++    + R+ +  LE+   M  +  T D   Y T+I    K+G +
Sbjct: 545 AEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWM 604

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A + +E++  + V  DI++YN LI+ +CK   L  A +LL+     G   ++ T  I+
Sbjct: 605 HAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGIM 664

Query: 192 IDGLCK 197
           +    +
Sbjct: 665 VQNFVR 670



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +LTP   T+N ++NGLCK  +   AL +   L       +++TYNILI   CKA  
Sbjct: 579 MLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARL 638

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
           L  A  +L     SG  PN  T+  +++
Sbjct: 639 LHDASMLLNRAVTSGITPNERTWGIMVQ 666


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 149/298 (50%), Gaps = 6/298 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++ LCK++    A+ ++  +++ G  P +VTY+ L+ G C+ GR+  A  +
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ D G  PN +TYTT+MK   + + +     +L+ M++ G +   + Y  +I     
Sbjct: 453 YSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYM 512

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + R+ E  + +++ +++G     ++YN++IN + K G + +A+ +  +M K+G   +  T
Sbjct: 513 VNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVT 572

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T  IDG C+      A   L Y+ + G   ++ AYN  +D   K G +  A++ F  + 
Sbjct: 573 YTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALH-FLVLL 631

Query: 248 VKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +KD  T     Y+S V      K +  ASK   S +K  V         ++DG    G
Sbjct: 632 LKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVG 689



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 5/298 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++   +TP   T+ +++ G      TD   ++ R + + G +P    +N++IKGL +  R
Sbjct: 317 VVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKR 376

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +LK + D+G  P+  TY  ++    +++K    + +   MK  G       Y +
Sbjct: 377 WKDAIGLLKLVVDTG-VPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHS 435

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + + GR+ EA     +M   G   + V+Y TL+  Y K+   + AY LL+EM + G
Sbjct: 436 LLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNG 495

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             C  YT+ ILI+GL     +      L+     GF      YN I++   K G +  A 
Sbjct: 496 VSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAF 555

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            ++  M  K    +  TY+S +   C+      A KLL+   + G++   +A  A +D
Sbjct: 556 GMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFID 613



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 125/291 (42%), Gaps = 44/291 (15%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CGD T     +NI++NGL           M +     GFVP  +TYN +I G  KAG + 
Sbjct: 498 CGDYT-----YNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMG 552

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           +A  + +++   G  PN +TYT+ +    R     L +++L  ++R G   D   Y   I
Sbjct: 553 SAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFI 612

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN---------------------------- 154
             F K G +  A  ++  ++ DG+  D+  YN                            
Sbjct: 613 DTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVV 672

Query: 155 -------TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
                  TLI+ + K G +  A  L  EM       D  T T L  GLC++G+I GA+  
Sbjct: 673 ADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRL 732

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTY 254
           L+ M ++    N+  YN +++   +DGK+  A  + + M     V D  TY
Sbjct: 733 LDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTY 783



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 6/290 (2%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +AL +F  ++  G   +   Y+++I+   + G    A  +  E+  +G  P+   Y   +
Sbjct: 168 DALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITI 227

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM-VTDGV 146
               + R     L++L  M+  G+      Y +V+   VK+ R+ EA    +QM +  G 
Sbjct: 228 SGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGK 287

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           ++D+V    L++ YC  G++  A  L DE+   G      T+ +LI G C A  +     
Sbjct: 288 KMDVVLATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKG-CDAEGMTDETY 346

Query: 207 HL-EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SMEVKDSFTYSSMVHNLC 262
            L   M + G   +   +N ++  L +D +   AI + +      V D FTY  ++H LC
Sbjct: 347 KLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLC 406

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           K ++L  A  L     ++GV+       +++ G    G   EA K+ S++
Sbjct: 407 KHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEM 456



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 152/381 (39%), Gaps = 76/381 (19%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYN------------------ 49
           P    + I ++GLCK R  D AL++   +++ GF P  +TY+                  
Sbjct: 218 PDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRL 277

Query: 50  ------------------ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC- 90
                             +L+ G C  G +  A  +  E+   G  P  +TY  ++K C 
Sbjct: 278 KDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCD 337

Query: 91  ----------------------------------FRNRKYKLGLEILSAMKRKGYTFDGF 116
                                              R++++K  + +L  +   G   D F
Sbjct: 338 AEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVP-DVF 396

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  +I    K  +L EA +  ++M   GV+  IV+Y++L+  YC++G+++ A  L  EM
Sbjct: 397 TYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEM 456

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GKD 233
             +GF  ++ T+T L+ G  K      A   L  M + G       YN +++ L    + 
Sbjct: 457 PDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRV 516

Query: 234 GKIDHAINVFESME-VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
            ++D  +  F S   V  + TY+S+++   KA  + SA  +     K G+        + 
Sbjct: 517 CEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSF 576

Query: 293 VDGLRHSGCRREAKKIQSKIR 313
           +DG   + C   A K+   +R
Sbjct: 577 IDGYCRTNCCDLAVKLLIYVR 597



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 35/221 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+   ++G C+    D A+++   +++ G  P++  YN  I   CK G +  A 
Sbjct: 566 ITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRAL 625

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L  L   G  P+   Y + +      +      +   +M ++    D   Y T+I  F
Sbjct: 626 HFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGF 685

Query: 126 VKIGRLKEATDYMEQMVT-----------------------DG------------VQLDI 150
            K+G +  A +   +M+                        DG            V  +I
Sbjct: 686 SKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNI 745

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           V+YN LIN   ++GKL+ A+ L DEM   G   D  T+ IL
Sbjct: 746 VTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF  + +GLC++   D A R+   +++    P +VTYN+LI    + G+
Sbjct: 701 MMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGK 760

Query: 61  LRTARWILKELGDSGHAPNAITY 83
           L+ A  +  E+  SG  P+  TY
Sbjct: 761 LQEAFQLHDEMLSSGVVPDDTTY 783



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 73/210 (34%), Gaps = 40/210 (19%)

Query: 139 EQMVTDGVQLDIVS-----------------------------------YNTLINLYCKE 163
            +MVT GV  D  S                                   Y+ +I    + 
Sbjct: 139 SRMVTRGVVPDAKSRTDLLVTTALGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRG 198

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
           G    A  L DEM   G + D+  + I I GLCK  +   A   L  M + GF+     Y
Sbjct: 199 GMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTY 258

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           + +VD L K  ++D A+ + + M +      D    + ++H  C    +  A  L    +
Sbjct: 259 SSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEVV 318

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             GV         ++ G    G   E  K+
Sbjct: 319 SDGVTPTNVTYGVLIKGCDAEGMTDETYKL 348


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 141/330 (42%), Gaps = 39/330 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N MLNG CK      AL +   L++ G  P ++TYN LI G C+ G L  AR
Sbjct: 380 LLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEAR 439

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT----- 120
            + +E+ + G  P+  TYT +M    + R   +  E    M  KG   D F Y T     
Sbjct: 440 RLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAE 499

Query: 121 ------------------------------VIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                                         +I    K G LK+A D   +MV+DG+Q D 
Sbjct: 500 LILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDC 559

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++Y  LI+ +C+ G L  A  LL+ M   G +    T+TILI   C+ GN+  A      
Sbjct: 560 ITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRK 619

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKR 266
           M  +G + N   YN ++  L + G+   A + F  M       + +TY+ ++   C+   
Sbjct: 620 MLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGN 679

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              A +L     ++G+        A+  G 
Sbjct: 680 WADAIRLYFEMHQNGIPPDYCTHNALFKGF 709



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 133/298 (44%), Gaps = 12/298 (4%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++  L +  +      +   ++  G +P LVTYN +I GL K+ ++  A+    E+
Sbjct: 316 TYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEM 375

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ ITY +++    +    K  L +L  ++R G       Y T+I  + ++G L
Sbjct: 376 RAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGL 435

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA    E+MV  G   D+ +Y  L+N   K   L  A    DEM  +G + D + +   
Sbjct: 436 EEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTR 495

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           I      G+   A    E M   G   +   YN I+D L K G +  A ++   M     
Sbjct: 496 ICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGL 555

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG--LRHSGCRR 303
             D  TY+ ++H  C+   L  A KLL   +  G+      Q +VV    L H+ CRR
Sbjct: 556 QPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGL------QPSVVTYTILIHTCCRR 607



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 38/247 (15%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T+N++++GLCK     +A  +   +   G  P+ +TY  LI   C+ G 
Sbjct: 515 MMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGL 574

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +L  +   G  P+ +TYT ++  C R                            
Sbjct: 575 LSEARKLLNGMVSDGLQPSVVTYTILIHTCCRR--------------------------- 607

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                   G L  A  +  +M+  G++ + ++YN LI+  C+ G+   AY    EM ++G
Sbjct: 608 --------GNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERG 659

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +KYT+T+LIDG C+ GN   A RL+ E M++ G   +   +N +     K G + HA
Sbjct: 660 LAPNKYTYTLLIDGNCREGNWADAIRLYFE-MHQNGIPPDYCTHNALFKGFDK-GHMYHA 717

Query: 240 INVFESM 246
           I   E++
Sbjct: 718 IEYLENI 724



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 7/287 (2%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           C  + P     N +L  L      D+   ++R + +    P +VTYN L+    K GR  
Sbjct: 201 CHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKD 260

Query: 63  TARWILKELGDSGHA--PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            A  +LKE+   G     N +TY  ++    R    +   +++ +M R       F Y  
Sbjct: 261 EASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSM-RLSKKASSFTYNP 319

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A ++ G +++      +M  +G+   +V+YN +I+   K  ++EAA L   EM   G
Sbjct: 320 LITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMG 379

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  +++G CKAGN+K A   L  + + G    +  YN ++D   + G ++ A 
Sbjct: 380 LLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEAR 439

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            + E M  +  F    TY+ +++   K + LP A +     L  G++
Sbjct: 440 RLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQ 486



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 44/290 (15%)

Query: 30  LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
           L  FR +  HG  P++   N +++ L  A R    R + +E+      P  +TY T++  
Sbjct: 193 LAAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLD- 251

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQ 147
                                             +F+K GR  EA+  +++M T G    
Sbjct: 252 ----------------------------------SFLKEGRKDEASMLLKEMETQGGGCL 277

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR-L 206
           L+ V+YN +I+   +EG LE A  L+D M +   +   +T+  LI  L + G ++    L
Sbjct: 278 LNDVTYNVVISFLAREGHLENAAKLVDSM-RLSKKASSFTYNPLITALLERGFVQKVEAL 336

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
            +E  N+ G    L  YN I+  L K  +++ A   F  M     + D  TY+SM++  C
Sbjct: 337 QMEMENE-GIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYC 395

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           KA  L  A  LL    ++G+         ++DG    G   EA++++ ++
Sbjct: 396 KAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEM 445


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 149/298 (50%), Gaps = 6/298 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++ LCK++    A+ ++  +++ G  P +VTY+ L+ G C+ GR+  A  +
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ D G  PN +TYTT+MK   + + +     +L+ M++ G +   + Y  +I     
Sbjct: 453 YSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYM 512

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + R+ E  + +++ +++G     ++YN++IN + K G + +A+ +  +M K+G   +  T
Sbjct: 513 VNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVT 572

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T  IDG C+      A   L Y+ + G   ++ AYN  +D   K G +  A++ F  + 
Sbjct: 573 YTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALH-FLVLL 631

Query: 248 VKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +KD  T     Y+S V      K +  ASK   S +K  V         ++DG    G
Sbjct: 632 LKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVG 689



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 125/291 (42%), Gaps = 44/291 (15%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CGD T     +NI++NGL           M +     GFVP  +TYN +I G  KAG + 
Sbjct: 498 CGDYT-----YNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMG 552

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           +A  + +++   G  PN +TYT+ +    R     L +++L  ++R G   D   Y   I
Sbjct: 553 SAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFI 612

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN---------------------------- 154
             F K G +  A  ++  ++ DG+  D+  YN                            
Sbjct: 613 DTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVV 672

Query: 155 -------TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
                  TLI+ + K G +  A  L  EM       D  T T L  GLC++G+I GA+  
Sbjct: 673 ADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRL 732

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTY 254
           L+ M ++    N+  YN +++   +DGK+  A  + + M     V D  TY
Sbjct: 733 LDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTY 783



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 138/298 (46%), Gaps = 5/298 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++   +TP   T+ +++ G      +D   ++ R + + G +     +N++IKGL +  R
Sbjct: 317 VVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKR 376

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L+ + D+G  P+  TY  ++    +++K    + +   MK  G       Y +
Sbjct: 377 WKDAIGLLELVVDTG-VPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHS 435

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + + GR+ EA     +M   G   + V+Y TL+  Y K+   + AY LL+EM + G
Sbjct: 436 LLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNG 495

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             C  YT+ ILI+GL     +      L+     GF      YN I++   K G +  A 
Sbjct: 496 VSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAF 555

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            ++  M  K    +  TY+S +   C+      A KLL+   + G++   +A  A +D
Sbjct: 556 GMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFID 613



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 5/304 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
            ++++G C +     AL +F  +   G  P  VTY +LIKG    G       + +++ +
Sbjct: 295 TMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIE 354

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G   +   +  ++K   R++++K  + +L  +   G   D F Y  +I    K  +L E
Sbjct: 355 QGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVP-DVFTYGCLIHWLCKHQKLHE 413

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A +  ++M   GV+  IV+Y++L+  YC++G+++ A  L  EM  +GF  ++ T+T L+ 
Sbjct: 414 AVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMK 473

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GKDGKIDHAINVFESME-VK 249
           G  K      A   L  M + G       YN +++ L    +  ++D  +  F S   V 
Sbjct: 474 GYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVP 533

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
            + TY+S+++   KA  + SA  +     K G+        + +DG   + C   A K+ 
Sbjct: 534 TTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLL 593

Query: 310 SKIR 313
             +R
Sbjct: 594 IYVR 597



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 140/317 (44%), Gaps = 6/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   +   +L    +     +AL +F  ++  G   +   Y+++I+   + G 
Sbjct: 141 MVTRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGM 200

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  E+  +G  P+   Y   +    + R     L++L  M+  G+      Y +
Sbjct: 201 HCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSS 260

Query: 121 VIAAFVKIGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           V+   VK+GR+ EA    +QM +  G ++D+V    L++ YC  G++  A  L DE+   
Sbjct: 261 VVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSD 320

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHL-EYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           G      T+ +LI G C A  +      L   M + G   +   +N ++  L +D +   
Sbjct: 321 GVTPTNVTYGVLIKG-CDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKD 379

Query: 239 AINVFE---SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           AI + E      V D FTY  ++H LCK ++L  A  L     ++GV+       +++ G
Sbjct: 380 AIGLLELVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLG 439

Query: 296 LRHSGCRREAKKIQSKI 312
               G   EA K+ S++
Sbjct: 440 YCEKGRMDEALKLYSEM 456



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 35/221 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+   ++G C+    D A+++   +++ G  P++  YN  I   CK G +  A 
Sbjct: 566 ITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRAL 625

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L  L   G  P+   Y + +      +      +   +M ++    D   Y T+I  F
Sbjct: 626 HFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGF 685

Query: 126 VKIGRLKEATDYMEQMVT-----------------------DG------------VQLDI 150
            K+G +  A +   +M+                        DG            V  +I
Sbjct: 686 SKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNI 745

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           V+YN LIN   ++GKL+ A+ L DEM   G   D  T+ IL
Sbjct: 746 VTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF  + +GLC++   D A R+   +++    P +VTYN+LI    + G+
Sbjct: 701 MMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGK 760

Query: 61  LRTARWILKELGDSGHAPNAITY 83
           L+ A  +  E+  SG  P+  TY
Sbjct: 761 LQEAFQLHDEMLSSGVVPDDTTY 783



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 5/210 (2%)

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
           S M  +G   D      ++    +     +A    ++M   G   D   Y+ +I    + 
Sbjct: 139 SRMVTRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRG 198

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
           G    A  L DEM   G + D+  + I I GLCK  +   A   L  M + GF+     Y
Sbjct: 199 GMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTY 258

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           + +VD L K G++D A+ + + M +      D    + ++H  C    +  A  L    +
Sbjct: 259 SSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVV 318

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             GV         ++ G    G   E  K+
Sbjct: 319 SDGVTPTNVTYGVLIKGCDAEGMSDETYKL 348


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 154/309 (49%), Gaps = 11/309 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++ I++NGLCK   T  A++M R   K     ++V Y+ +I  LCK   +  A  +  E
Sbjct: 116 VSYAILMNGLCKMGETRAAMQMLR---KTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSE 172

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  PN  T++ ++    ++RK K  + +L+ M +KG   +   Y  ++  +  + +
Sbjct: 173 MIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQ 232

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + +A +    MV +GV+ ++  YN +IN  CK+ +++ A  L  EM  +    D  T+ I
Sbjct: 233 VNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNI 292

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           LIDGLCK G I  +   ++ M  IG   ++  YN ++  L K+  +D AI + +  E+KD
Sbjct: 293 LIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVK--EIKD 350

Query: 251 S------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                   TY++++  LCK  RL  A  +    L  G  I       +++GL   G   E
Sbjct: 351 QGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDE 410

Query: 305 AKKIQSKIR 313
           A  + S++ 
Sbjct: 411 ALALLSRME 419



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 144/286 (50%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TF+I+++ LCK+R    A+ +   + K G  P +VTY  ++ G C   +
Sbjct: 173 MIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQ 232

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I   +   G  PN   Y  I+    + ++    + +   M  K    D   Y  
Sbjct: 233 VNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNI 292

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+G++  + + +++M + G  +DI++YN+L++  CK   L+ A  L+ E++ QG
Sbjct: 293 LIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQG 352

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+T LIDGLCK G ++ A +  + +   G+   +  YN +++ L K G  D A+
Sbjct: 353 IQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEAL 412

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME    + D+ +Y ++++ L +       +KLL + +  G+
Sbjct: 413 ALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGL 458



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 133/273 (48%), Gaps = 9/273 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    FN +L  L K  +   A+ +FR L+ +G  P +VT  IL+   C  G +     
Sbjct: 7   TPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFS 66

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           IL ++   G+ PN+IT+TT++K  C   + Y+  L     +   G+  D   Y  ++   
Sbjct: 67  ILTKILKMGYEPNSITFTTLIKGMCLNGQAYE-ALLFHDHVVAHGFKLDQVSYAILMNGL 125

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G  + A   M+ +    V  D+V Y+T+I+  CK   +  AY L  EM  +G   + 
Sbjct: 126 CKMGETRAA---MQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNV 182

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT +IL+D LCK    K A   L  M K G   N+  Y  I+D      +++ A+N+F  
Sbjct: 183 YTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNV 242

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  +    + + Y+ +++ LCK KR+  A  L 
Sbjct: 243 MVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLF 275


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 135/270 (50%), Gaps = 4/270 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN+++NGLCK        ++   +   G  P  VTYN LI GLC  G+L  A  +
Sbjct: 237 PSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISL 296

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  S   PN +TY TI+    +  +   G  +L+ M+ +GY  + + Y  +I+   K
Sbjct: 297 LDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFK 356

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +EA    ++M     +L+ + Y+ +I+  C++GK + A  +L EM     + + YT
Sbjct: 357 EGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYT 416

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+ G  +AGN   A    + M K  F  N   Y+ ++  L KDGK+  A+ V+  M 
Sbjct: 417 YSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQML 476

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKL 273
            K    D   Y SM++ L  A  +  A +L
Sbjct: 477 GKGCKPDVVAYGSMINGLSNAGLVEDALQL 506



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 162/347 (46%), Gaps = 39/347 (11%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P   TFN+++  +CK    D+A++MFR +      P++ TY  L+ GLCKA R+  A
Sbjct: 164 NISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEA 223

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+   G  P+ +T+  ++    +        +++  M  KG   +   Y T+I  
Sbjct: 224 VSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHG 283

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G+L++A   +++MV+     ++V+Y T+IN   K+G+      +L  ME++G+  +
Sbjct: 284 LCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVN 343

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +Y ++ LI GL K G  + A    + M     + N   Y+ ++D L +DGK D A+ V  
Sbjct: 344 EYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLS 403

Query: 245 SME----------------------------------VKDSFT-----YSSMVHNLCKAK 265
            M                                    K +FT     YS ++H LCK  
Sbjct: 404 EMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDG 463

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           ++  A  +    L  G +    A  ++++GL ++G   +A ++ +++
Sbjct: 464 KVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEM 510



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 9/271 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFR---GLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           +FN +LN + +      AL  +    G +     P ++T+N++IK +CK G +  A  + 
Sbjct: 133 SFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMF 192

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           +++  S   P+  TY T+M    +  +    + +L  M+  G       +  +I    K 
Sbjct: 193 RDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKK 252

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G L      ++ M   G   + V+YNTLI+  C +GKLE A  LLD M       +  T+
Sbjct: 253 GDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTY 312

Query: 189 TILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             +I+GL K G  + GAR+ L  M + G+  N   Y+ ++  L K+GK   A+ +F+ M 
Sbjct: 313 GTIINGLVKQGRALDGARV-LALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMT 371

Query: 248 VKD----SFTYSSMVHNLCKAKRLPSASKLL 274
           VK+    +  YS+++  LC+  +   A ++L
Sbjct: 372 VKECELNTIVYSAVIDGLCRDGKPDEALEVL 402



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 119/248 (47%), Gaps = 2/248 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGL K     +  R+   +++ G+      Y+ LI GL K G+
Sbjct: 300 MVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGK 359

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  + KE+       N I Y+ ++    R+ K    LE+LS M       + + Y +
Sbjct: 360 SQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSS 419

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G   +A +  + M       + V Y+ LI+  CK+GK++ A ++  +M  +G
Sbjct: 420 LMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKG 479

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            + D   +  +I+GL  AG ++ A +L+ E +  +     ++  YN +++ L K   I  
Sbjct: 480 CKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISR 539

Query: 239 AINVFESM 246
           AI++  SM
Sbjct: 540 AIDLLNSM 547



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 20/267 (7%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  ++ +++GLC++   D AL +   +  +   P   TY+ L+KG  +AG    A  + K
Sbjct: 379 TIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWK 438

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++       N + Y+ ++    ++ K K  + + + M  KG   D   Y ++I      G
Sbjct: 439 DMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAG 498

Query: 130 RLKEATDYMEQMV--TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            +++A     +M+      Q D+V+YN L+N  CK+  +  A  LL+ M  +G + D  T
Sbjct: 499 LVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVT 558

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             I +  L         R  L+           E  + +V RL K  ++  A  + E M 
Sbjct: 559 CIIFLRTL---------REKLDPPQ-----DGREFLDGLVVRLLKRQRVLGASKIVEVML 604

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSA 270
            K       T++ +V +LC  K++ +A
Sbjct: 605 QKLLPPKPSTWTRVVEDLCNPKKVQAA 631



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 18/165 (10%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGL--QKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           P    +  M+NGL      ++AL+++  +  Q+    P++VTYNIL+  LCK   +  A 
Sbjct: 482 PDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAI 541

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAA 124
            +L  + D G  P+ +T    +    R  + KL         + G  F DG     ++  
Sbjct: 542 DLLNSMLDRGCDPDLVTCIIFL----RTLREKLD------PPQDGREFLDG-----LVVR 586

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
            +K  R+  A+  +E M+   +     ++  ++   C   K++AA
Sbjct: 587 LLKRQRVLGASKIVEVMLQKLLPPKPSTWTRVVEDLCNPKKVQAA 631



 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1   MIC--GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 55
           M+C   D  P   T+NI+LN LCK      A+ +   +   G  P+LVT  I ++ L
Sbjct: 510 MLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTL 566


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 148/312 (47%), Gaps = 9/312 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++N +LNG  K   +D A   +  +   G +P++VTY+ +I  LCKA  +  
Sbjct: 195 GGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDK 254

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  P+ +TY +I+     + + K  +  L  M+  G   +   Y +++ 
Sbjct: 255 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMN 314

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ DI +Y TL+  Y  +G L   + LLD M + G + 
Sbjct: 315 YLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQP 374

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +   ILI    K   +  A L    M + G + N+  Y  ++D L K G +D A+  F
Sbjct: 375 DHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYF 434

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M       +   Y+S++H LC   +   A +L+L  L  G+ +      +++D    S
Sbjct: 435 EQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIID----S 490

Query: 300 GCRREAKKIQSK 311
            C +E + I+S+
Sbjct: 491 HC-KEGRVIESE 501



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 156/311 (50%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ ++  LCK +  D A+ +   + K+G +P+ +TYN ++ G C +G+ + A 
Sbjct: 232 ILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 291

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  PN +TY+++M    +N +     +I  +M ++G   D   Y T++  +
Sbjct: 292 GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGY 351

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+Q D   +N LI  Y K+ K++ A L+  +M + G   + 
Sbjct: 352 ATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNV 411

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  +ID LCK+G++  A L+ E M   G   N+  Y  ++  L    K D A  +   
Sbjct: 412 VCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILE 471

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    ++  ++S++ + CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 472 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK 531

Query: 302 RREAKKIQSKI 312
             EA K+ + +
Sbjct: 532 MDEATKLLASM 542



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 142/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ ++N LCKN  +  A ++F  + K G  P++ TY  L++G    G L     +
Sbjct: 304 PNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHAL 363

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  +G  P+   +  ++    +  K    + + S M++ G   +   Y TVI    K
Sbjct: 364 LDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCK 423

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + +A  Y EQM+ +G+  +I+ Y +LI+  C   K + A  L+ EM  +G   +   
Sbjct: 424 SGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIF 483

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              +ID  CK G +  +    + M +IG   ++  YN ++D     GK+D A  +  SM 
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  TY ++++  C+  R+  A  L    + SGV         ++ GL H+    
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTA 603

Query: 304 EAKKIQSKI 312
            AK++   I
Sbjct: 604 AAKELYVSI 612



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 146/312 (46%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++    K    D A+ +F  +++HG  P +V Y  +I  LCK+G 
Sbjct: 367 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGS 426

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G  PN I YT+++       K+    E++  M  +G   +   + +
Sbjct: 427 VDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ DI++YNTLI+  C  GK++ A  LL  M   G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+  LI+G C+   +  A    + M   G   N+  YN I+  L    +   A 
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 241 NVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ++ S+    +     TY+ ++H LCK      A ++  +   + +++       ++  L
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 666

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 667 LKCGRMDEAKDL 678



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 10/289 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +TP   T+ I++   C+    D        + K GF  + +T+  L+KGLC   R   
Sbjct: 86  GKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSD 145

Query: 64  A-RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM---KRKGYTFDGFGY 118
           A   +L+ + + G  P+  +Y  ++K  C  NR  +  LE+L  M   +  G   D   Y
Sbjct: 146 AMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQE-ALELLHMMADDRGGGSPPDVVSY 204

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            TV+  F K G   +A     +M+  G+  D+V+Y+++I   CK   ++ A  +L+ M K
Sbjct: 205 NTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK 264

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G   D  T+  ++ G C +G  K A   L+ M   G + N+  Y+ +++ L K+G+   
Sbjct: 265 NGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTE 324

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           A  +F+SM  +    D  TY +++        L     LL   +++G++
Sbjct: 325 ARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQ 373



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 106/232 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++G C     D A ++   +   G  P++VTY  LI G C+  R+  A  +
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALAL 573

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+  SG +PN ITY  I++  F  R+     E+  ++ + G   +   Y  ++    K
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 633

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    + +    +QL+  ++N +I    K G+++ A  L       G   D  T
Sbjct: 634 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRT 693

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           ++++ + L + G+++        M + G  ++    N IV +L + G I  A
Sbjct: 694 YSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 37/241 (15%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P   TY  ++ CC R  +  LG   L  + +KG+  D   +  ++       R  +A D 
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 138 MEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
           + + +T+ G   D+ SYN L+   C E + + A  LL  M                    
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD----------------- 192

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSF 252
                +G           G   ++ +YN +++   K+G  D A + +  M     + D  
Sbjct: 193 -----RGG----------GSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV 237

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           TYSS++  LCKA+ +  A ++L + +K+GV        +++ G   SG  +EA     K+
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297

Query: 313 R 313
           R
Sbjct: 298 R 298



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL   T TFNIM+  L K    D A  +F     +G VP++ TY+++ + L + G L   
Sbjct: 651 DLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEEL 710

Query: 65  RWILKELGDSGHAPNAITYTTIMK 88
             +   + ++G + ++    +I++
Sbjct: 711 DDLFLSMEENGCSADSRMLNSIVR 734


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 5/267 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +N +LN LCK +    A  +F  +  +  FVP++V+Y+ILI G CK   L  A  + K++
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D    PN  TY   +    R  +      +   M   G + D   Y T+I  F    + 
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +  E M++ G + + V+YN L++  CKE K + A+ L  +M ++G + D+ T+T L
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKIDHAINVFESMEV 248
           + G C  G I+ A    + M   G D ++ AYNC++    R GK G+      V  S + 
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC 688

Query: 249 K-DSFTYSSMVHNLCKAKRLPSASKLL 274
           K D+ +++ M+  L KAKRL  A ++ 
Sbjct: 689 KPDTVSHNIMIDGLSKAKRLDDAVEVF 715



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 136/274 (49%), Gaps = 5/274 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   +++I+++G CK      A ++++ +     VP + TYN  + GL + GR+  A+
Sbjct: 478 FVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQ 537

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+  +G +P+ ITY+T++      RK+    E+   M  +G   +   Y  ++   
Sbjct: 538 GVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGL 597

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +  EA +   +MV  G   D V+Y TL+  +C  GK+E A  + DEM  +G + D 
Sbjct: 598 CKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDV 657

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  L+ G  +AG    A+   + M       +  ++N ++D L K  ++D A+ VFE 
Sbjct: 658 VAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFER 717

Query: 246 ME-----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ME       D  TY+S++  LC  +RL  A K+ 
Sbjct: 718 MEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVF 751



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 131/283 (46%), Gaps = 14/283 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +  P   T+N  LNGL +     +A  ++  +   G  P+++TY+ LI G   A +
Sbjct: 508 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARK 567

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + + +   G  PNA+TY  ++    +  K     E+   M  +G   D   Y T
Sbjct: 568 HDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTT 627

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F  +G++++A +  ++MV+ G   D+V+YN L+  + + GK   A  L   M  + 
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQ 687

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEAYNCIVDRLGKDGKIDHA 239
            + D  +H I+IDGL KA  +  A    E M +  G   +L  YN ++  L  + ++  A
Sbjct: 688 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEA 747

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + VF+ +             +  K    P A  +LL  +K G+
Sbjct: 748 MKVFKEI-------------DRLKLSPDPHAFNVLLEAIKCGI 777



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 143/311 (45%), Gaps = 7/311 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P + T + ++  LCK    D+AL +   + K G+ P++ T+++LI  LCKA +++ A
Sbjct: 369 NIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEA 428

Query: 65  RWILKELGD--SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYCTV 121
           +  L+ +    S  + +  +Y +++    + +K      I S M   + +  D   Y  +
Sbjct: 429 QEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSIL 488

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F KI  L  A    +QM+      ++ +YN  +N   ++G++  A  + +EM   G 
Sbjct: 489 IDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGC 548

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D  T++ LI G   A     A    E M   G   N   YNC++  L K+ K D A  
Sbjct: 549 SPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHE 608

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +F  M  +    D  TY+++++  C   ++  A ++    +  G      A   ++ G  
Sbjct: 609 LFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFF 668

Query: 298 HSGCRREAKKI 308
            +G   EAK++
Sbjct: 669 RAGKPGEAKQL 679



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 132/279 (47%), Gaps = 8/279 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +   L+GLCK+   + A    R +Q+     + V Y++LI+ L ++GR+  A     E+
Sbjct: 307 AWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPV-YDMLIRLLIESGRIDKAEEACLEI 365

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P++ T  ++++   +  +    L +L  M ++GY  D   +  +I    K  ++
Sbjct: 366 AGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKI 425

Query: 132 KEATDYMEQM--VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKYTH 188
           +EA ++++ M            SYN+L+N  CK  K+  A+ +   M  ++ F  D  ++
Sbjct: 426 QEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSY 485

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           +ILIDG CK   +  A    + M  +    N+  YN  ++ L + G+I  A  V+E M  
Sbjct: 486 SILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVA 545

Query: 249 ----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                D  TYS+++H    A++   A +L  + +  G R
Sbjct: 546 AGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCR 584



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 124/254 (48%), Gaps = 9/254 (3%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-NAITYTTI 86
            A ++FR + K G  P+   Y+ ++   CK   L  A  +  E+     AP N + +T  
Sbjct: 252 EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAF 311

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +    ++ K +   E    M+    +     Y  +I   ++ GR+ +A +   ++    +
Sbjct: 312 LSGLCKSGKIEQAFEACRTMQESLSSSQPV-YDMLIRLLIESGRIDKAEEACLEIAGRNI 370

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q    + +++I   CK G++++A  LL+ M K+G+  D  TH++LI+ LCKA  I+ A+ 
Sbjct: 371 QPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE 430

Query: 207 HLEYMNK--IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVH 259
            L+ M++      S+  +YN +++ L K  K+  A  +F +M  + SF     +YS ++ 
Sbjct: 431 FLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILID 490

Query: 260 NLCKAKRLPSASKL 273
             CK   L  A KL
Sbjct: 491 GFCKIDELGRAEKL 504



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 6/275 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +L+ L ++R    A ++F  +   G VP   TY +L++  C       A     E+
Sbjct: 131 TYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEM 190

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  P++  Y  + +C     K      +      K    +      ++  FV   + 
Sbjct: 191 VDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKA 250

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTI 190
            EA+     MV  G + D   Y+ ++  +CK   L+ A+ L  EM  +     +    T 
Sbjct: 251 IEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTA 310

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESM 246
            + GLCK+G I+ A      M +    S+   Y+ ++  L + G+ID A    + +    
Sbjct: 311 FLSGLCKSGKIEQAFEACRTMQE-SLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRN 369

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               S T  S++  LCKA R+ SA  LL + +K G
Sbjct: 370 IQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRG 404


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 120/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  K    D   R+   +Q  G  P++ T+++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ B+G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 227 ELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+  D +++M   G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G    +  Y  I++   K G +     + + 
Sbjct: 347 XAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 113/219 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T ++++NGLCK    D+A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I +++      P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD  +Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            + +  T+T++I+  CK G++      L+ M + G+  N
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPN 415



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G+   L  +NIL+   CK G +R A+ +   +   G  P+ +++ T+M    +      G
Sbjct: 131 GYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
             + S M+  G   D + +  +I    K  ++ +A +  ++M+ +G+  + V++ TLI+ 
Sbjct: 191 FRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDG 250

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G+++ A  +  +M  Q    D  T+  LI GLCK G++K     ++ M+  G   +
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPD 310

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+G ++ A    + M  +    D   Y++++  LC+  R   A K+L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLR 370

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 371 EMLSVGLK 378



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+   + +A +M R +   G  PE+ TY ++I   CK G + T   +LKE+ 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             G+ PN +T
Sbjct: 409 RXGYXPNXVT 418


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 137/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF I++ GLC       AL     +   GF  + V+Y  LI GLC+ G  + A  +
Sbjct: 126 PDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQL 185

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      PN + Y+TI+    +++      ++   M  K  + D   Y ++I+ F  
Sbjct: 186 LRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCV 245

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LK A D   +M++D +  ++ +++ LI+ +CKEGK+  A  +L  M K+  + D  T
Sbjct: 246 VGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVT 305

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A+     M + G   ++ +Y+ +++   K   +D A+ +FE M 
Sbjct: 306 YNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMH 365

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLL 274
            K  F    TY+S+V  LCK+ R   A +L+
Sbjct: 366 CKQIFPNVVTYNSLVDGLCKSGRTSCALELV 396



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 152/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++ +CK++  ++A  ++  +      P++VTY+ LI G C  G+L+ A  +
Sbjct: 196 PNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDL 255

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +      PN  T++ ++    +  K +    +L+ M +K    D   Y +++  +  
Sbjct: 256 FNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCL 315

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + ++ +A      M   GV  D+ SY+ +IN +CK   ++ A  L +EM  +    +  T
Sbjct: 316 VKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVT 375

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DGLCK+G    A   ++ M+  G  SN+  YN I+D + K+  +D AI +   ++
Sbjct: 376 YNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIK 435

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D FTY+ +++ LCK  RL  A K+    L  G         ++++G  + G   
Sbjct: 436 EKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFD 495

Query: 304 EAKKIQSKIR 313
           E   + SK++
Sbjct: 496 EGLAMLSKMK 505



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   +++IM+NG CK +  D A+++F  +      P +VTYN L+ GLCK+GR   A 
Sbjct: 334 VTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCAL 393

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ D G   N ITY +I+    +N      + +L+ +K KG   D F Y  +I   
Sbjct: 394 ELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGL 453

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+GRL +A    E ++  G   +I +Y +LIN +C +G  +    +L +M+  G   + 
Sbjct: 454 CKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNA 513

Query: 186 YTHTILIDGL 195
            T+ ILI  L
Sbjct: 514 ITYEILIHSL 523



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 137/266 (51%), Gaps = 4/266 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ +++G C       A+ +F  +      P + T++ILI G CK G+
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGK 283

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A+ +L  +       + +TY ++M      ++      + + M ++G T D + Y  
Sbjct: 284 VREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSI 343

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F KI  + EA    E+M    +  ++V+YN+L++  CK G+   A  L+DEM  +G
Sbjct: 344 MINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRG 403

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  ++D +CK  ++  A + L  + + G   ++  Y  +++ L K G++D A 
Sbjct: 404 QPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQ 463

Query: 241 NVFESMEVK----DSFTYSSMVHNLC 262
            VFE + VK    + +TY+S+++  C
Sbjct: 464 KVFEDLLVKGYSPNIYTYTSLINGFC 489



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 150/335 (44%), Gaps = 45/335 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L  L K +    AL + + ++ +G  P+ +T N+L+    + G ++ +  +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             ++   G+ P+A+T+T ++K  C +   +K  L     +  +G+  D   Y T+I    
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHK-ALYFHDKVVAQGFQLDQVSYGTLINGLC 174

Query: 127 KIGRLKEATDYME-----------------------------------QMVTDGVQLDIV 151
           ++G  K A   +                                    +MV+  +  D+V
Sbjct: 175 RVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVV 234

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y++LI+ +C  GKL+ A  L + M       + YT +ILIDG CK G ++ A+  L  M
Sbjct: 235 TYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVM 294

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            K     ++  YN ++D      +++ A ++F  M       D ++YS M++  CK K +
Sbjct: 295 MKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMV 354

Query: 268 PSASKLL--LSCLKSGVRILKSAQKAVVDGLRHSG 300
             A KL   + C +    ++     ++VDGL  SG
Sbjct: 355 DEAMKLFEEMHCKQIFPNVV--TYNSLVDGLCKSG 387



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 134/268 (50%), Gaps = 8/268 (2%)

Query: 34  RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93
           R L K+  +P  + +  ++  L KA + +TA  + +++  +G  P+ IT   +M C  + 
Sbjct: 47  RLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQL 106

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
              K    + + + +KGY  D   +  +I      G + +A  + +++V  G QLD VSY
Sbjct: 107 GHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSY 166

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMN 212
            TLIN  C+ G+ +AA  LL  ++ +    +   ++ +ID +CK   +  A  L+ E ++
Sbjct: 167 GTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVS 226

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS-----FTYSSMVHNLCKAKRL 267
           K     ++  Y+ ++      GK+ +A+++F  M + D+     +T+S ++   CK  ++
Sbjct: 227 K-RISPDVVTYSSLISGFCVVGKLKYAVDLFNRM-ISDNINPNVYTFSILIDGFCKEGKV 284

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDG 295
             A  +L   +K  V++      +++DG
Sbjct: 285 REAKNVLAVMMKKNVKLDVVTYNSLMDG 312



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 74/135 (54%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +L+ +CKN + D A+ +   +++ G  P++ TY +LI GLCK GRL  A+ + ++L
Sbjct: 410 TYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDL 469

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G++PN  TYT+++        +  GL +LS MK  G   +   Y  +I +  +    
Sbjct: 470 LVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDEN 529

Query: 132 KEATDYMEQMVTDGV 146
            +A   + +M+  G+
Sbjct: 530 DKAEKLLREMIARGL 544



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 87/181 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C  + P   T+N +++GLCK+  T  AL +   +   G    ++TYN ++  +CK   
Sbjct: 364 MHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNH 423

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++ + G  P+  TYT ++    +  +     ++   +  KGY+ + + Y +
Sbjct: 424 VDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTS 483

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F   G   E    + +M  +G   + ++Y  LI+   ++ + + A  LL EM  +G
Sbjct: 484 LINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARG 543

Query: 181 F 181
            
Sbjct: 544 L 544


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 4/262 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   ++ GLC     +  L M + +++ G+ P    Y  L+   C+  +   A  I
Sbjct: 228 PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKI 287

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+ DSG  P  +T T ++    R  +    + +  +M+ KG   + + Y  ++  F  
Sbjct: 288 LNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCN 347

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ +A   ++QM   GV+ D+V+YN LI   C +G + +A+ LL  ME  G   D+YT
Sbjct: 348 AGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYT 407

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           + +LID LCK G +  A    + +   G   N   +N +++ L K GK D A    E+M 
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMI 467

Query: 247 ---EVKDSFTYSSMVHNLCKAK 265
                 D++TYS  + NLCK K
Sbjct: 468 SAGYAPDTYTYSPFIENLCKTK 489



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 138/299 (46%), Gaps = 4/299 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L PC  T  I++N  C+      A+R+F  ++  G  P + TYN +++G C AG+
Sbjct: 291 MFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGK 350

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++ + G  P+ +TY  +++    +        +L  M+  G   D + Y  
Sbjct: 351 VYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNV 410

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K G++ EA    + +   G++ + V++NT+IN  CK GK + A   L+ M   G
Sbjct: 411 LIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAG 470

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  D YT++  I+ LCK    +     ++ M +     +   Y  +++RL  +     A 
Sbjct: 471 YAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLAT 530

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            ++  M  +    D  TY++ V   C   RL  A  ++    K    +   A   ++DG
Sbjct: 531 RIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDG 589



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 144/304 (47%), Gaps = 8/304 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFN ++ G C+ +  + A  +F  +   GF  + V+Y  LI+G C+AGR
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGR 214

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +E+      P+  T+  ++K      + + GL +L  MK  G+      Y  
Sbjct: 215 IDEALELFREMTQ----PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAA 270

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + +  + +EA   + +M   G+   +V+   ++N YC+EG++  A  + + M  +G
Sbjct: 271 LVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKG 330

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E + +T+  ++ G C AG +  A   L+ M + G + ++  YN ++     DG I  A 
Sbjct: 331 CEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAF 390

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME      D +TY+ ++  LCK  ++  A  L       G+R        V++GL
Sbjct: 391 RLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450

Query: 297 RHSG 300
             +G
Sbjct: 451 CKAG 454



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 140/330 (42%), Gaps = 36/330 (10%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARWILKE 70
            F  +L    +   T   LR+F  + +H    P   TYN LI+ LC+   LR A+  L  
Sbjct: 95  PFRSLLTHFSRYALTPLMLRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSL 154

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  SG  P+A T+ +++    R ++ ++  ++   M  +G++ D   Y  +I  F + GR
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGR 214

Query: 131 LKEATDYMEQMVTD-------------------------------GVQLDIVSYNTLINL 159
           + EA +   +M                                  G +    +Y  L++L
Sbjct: 215 IDEALELFREMTQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDL 274

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +C+E K E A  +L+EM   G      T TI+++  C+ G + GA    E M   G + N
Sbjct: 275 WCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPN 334

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
           +  YN IV      GK+  A+ + + M       D  TY+ ++   C    + SA +LL 
Sbjct: 335 VWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLR 394

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               +G+   +     ++D L  +G   EA
Sbjct: 395 LMEGNGLAADQYTYNVLIDALCKTGKVDEA 424



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 117/256 (45%), Gaps = 5/256 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG + P   T+N+++ G C + +  +A R+ R ++ +G   +  TYN+LI  LCK G++ 
Sbjct: 364 CG-VEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVD 422

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +   L   G  PN++T+ T++    +  K+ +    L  M   GY  D + Y   I
Sbjct: 423 EACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFI 482

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K    +E   ++++M+   V+   V+Y  +IN    E     A  +  +M  QG  
Sbjct: 483 ENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCS 542

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+T  +   C  G +  A   +  M K     +  AYN ++D     G+ D A+ +
Sbjct: 543 PDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTI 602

Query: 243 FESM----EVKDSFTY 254
            + M     + + FT+
Sbjct: 603 LKHMTGVASMPNHFTF 618



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 116/316 (36%), Gaps = 55/316 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P T  + I++N L   R    A R++  +   G  P++VTY   ++  C  GR
Sbjct: 501 MLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGR 560

Query: 61  LRTARWILKELGD--------------SGHA---------------------PNAITY-- 83
           L  A  ++ E+                 GH                      PN  T+  
Sbjct: 561 LDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFI 620

Query: 84  ------------TTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
                          +K     +  +L    E+   MK+         Y +++  F +  
Sbjct: 621 LLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEER 680

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL E T  +  M  + + L+   YN L+N +CK      A+ LL  M   GF  +   + 
Sbjct: 681 RLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQ 740

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID---HAINVFESM 246
            L+ GL   G    A+          ++++   +  I+D   + G  D     I++ E M
Sbjct: 741 YLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQM 800

Query: 247 EVKDS-FTYSSMVHNL 261
           + K S  TY+ +   L
Sbjct: 801 KCKPSDETYAMLTEEL 816



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 106/301 (35%), Gaps = 51/301 (16%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P T T++  +  LCK + +   L     + +    P  V Y I+I  L     
Sbjct: 466 MISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERN 525

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  I  ++   G +P+ +TYTT ++      +      +++ MK+     D   Y T
Sbjct: 526 YGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNT 585

Query: 121 VIAAFVKIGR-------------------------------------------------- 130
           +I     IG+                                                  
Sbjct: 586 LIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTI 645

Query: 131 -LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L +  +  E M  + V     +Y +++  + +E +L+    L+  M+++    ++  + 
Sbjct: 646 ELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYN 705

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            L++  CK      A   L  M   GF  NL  Y  ++  L  +G+ D A  +F S   K
Sbjct: 706 ALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWK 765

Query: 250 D 250
           +
Sbjct: 766 E 766


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 155/311 (49%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T++ ++  LCK +  D A+ +   + K+G +P  +TYN ++ G C + + + A 
Sbjct: 227 ISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAI 286

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     +I  +M ++G   D   YCT++  +
Sbjct: 287 GFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGY 346

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  D   +N LI  Y K+ K++ A L+  +M + G   + 
Sbjct: 347 ATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNV 406

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G++  A L+ E M   G   N+  Y  ++  L    K D A  +   
Sbjct: 407 VTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILE 466

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    ++  ++S++H+ CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 467 MLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK 526

Query: 302 RREAKKIQSKI 312
             EA K+ S +
Sbjct: 527 MDEATKLLSSM 537



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 11/313 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++  ++NG  K   +D A   +  +      P++VTY+ +I  LCK   +  
Sbjct: 190 GGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDK 249

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  PN +TY +I+     + + K  +  L  M+  G   D   Y +++ 
Sbjct: 250 AMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMD 309

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ DI +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 310 YLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +   ILI    K   +  A L    M + G + N+  Y  ++  L K G +D A+  F
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 244 ESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           E M + +  T     Y+S++H+LC   +   A +L+L  L  G+ +         + + H
Sbjct: 430 EQM-IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL----NTIFFNSIIH 484

Query: 299 SGCRREAKKIQSK 311
           S C +E + I+S+
Sbjct: 485 SHC-KEGRVIESE 496



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++    K    D A+ +F  +++HG  P +VTY  +I  LCK+G 
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G  PN I YT+++       K+    E++  M  +G   +   + +
Sbjct: 422 VDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ ++++Y+TLI+ YC  GK++ A  LL  M   G
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG 541

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D  T+  LI+G C+   +  A    + M   G   N+  YN I+  L    +   A 
Sbjct: 542 MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 601

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + +S    +  TY+ ++H LCK      A ++  +   + +++       ++  L
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 661

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 662 LKVGRNDEAKDL 673



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 39/347 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +L+G C +     A+   + ++  G  P++VTYN L+  LCK GR
Sbjct: 257 MVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 316

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-------------------------------- 88
              AR I   +   G  P+  TY T+++                                
Sbjct: 317 STEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNI 376

Query: 89  --CCF-RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
             C + +  K    + + S M++ G   +   Y  VI    K G + +A  Y EQM+ +G
Sbjct: 377 LICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEG 436

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  +I+ Y +LI+  C   K + A  L+ EM  +G   +      +I   CK G +  + 
Sbjct: 437 LTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESE 496

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
              + M +IG   N+  Y+ ++D     GK+D A  +  SM       D  TY+++++  
Sbjct: 497 KLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGY 556

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           C+  R+  A  L    + SGV         ++ GL H+     AK++
Sbjct: 557 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 132/288 (45%), Gaps = 10/288 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +TP   T+ I++   C+    D        + K GF  E +T+  L+KGLC   R   
Sbjct: 81  GKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSD 140

Query: 64  A-RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM---KRKGYTFDGFGY 118
           A   +L+ + +    P+  + T ++K  C  NR  +  LE+L  M   +  G   D   Y
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQE-ALELLHMMADDRGGGSAPDVVSY 199

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            TVI  F K G   +A     +M+   +  D+V+Y+++I   CK   ++ A  +L  M K
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVK 259

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G   +  T+  ++ G C +   K A   L+ M   G + ++  YN ++D L K+G+   
Sbjct: 260 NGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTE 319

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           A  +F+SM  +    D  TY +++        L     LL   +++G+
Sbjct: 320 ARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI 367



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 14/252 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G C     D A ++   +   G  P+ VTYN LI G C+  R+  A  +
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALAL 568

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+  SG +PN ITY  I++  F  R+     E+   + + G   +   Y  ++    K
Sbjct: 569 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCK 628

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    + +    +QL+  ++N +I    K G+ + A  L       G   + +T
Sbjct: 629 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWT 688

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI-NVFESM 246
           + ++      A NI G  L LE ++++ F  ++E   C VD     G ++  +  + +  
Sbjct: 689 YRLM------AENIIGQGL-LEELDQLFF--SMEDNGCTVD----SGMLNFIVRELLQRG 735

Query: 247 EVKDSFTYSSMV 258
           E+  + TY SM+
Sbjct: 736 EITRAGTYLSMI 747



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 126/297 (42%), Gaps = 43/297 (14%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +++  CK      + ++F  + + G  P ++TY+ LI G C AG++  A  +L 
Sbjct: 476 TIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLS 535

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+ +TY T++                             GYC       ++ 
Sbjct: 536 SMFSVGMKPDCVTYNTLIN----------------------------GYC-------RVS 560

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+ +A    ++MV+ GV  +I++YN ++       +  AA  L   + K G + +  T+ 
Sbjct: 561 RMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYN 620

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE--AYNCIVDRLGKDGKIDHAINVFESME 247
           I++ GLCK  N+    L + + N    D  LE   +N ++  L K G+ D A ++F +  
Sbjct: 621 IILHGLCK-NNLTDEALRM-FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFS 678

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               V + +TY  M  N+     L    +L  S   +G  +       +V  L   G
Sbjct: 679 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRG 735



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P   TY  ++ CC R  +  LG   L  + +KG+  +   +  ++       R  +A D 
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 138 MEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFECDKYTHTILID 193
           + + +T+     D+ S   L+   C E + + A  LL  M      G   D  ++T +I+
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVIN 204

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT 253
           G  K G+                D     Y+ ++DR     +I             D  T
Sbjct: 205 GFFKEGD---------------SDKAYSTYHEMLDR-----RIS-----------PDVVT 233

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           YSS++  LCK + +  A ++L + +K+GV        +++ G   S   +EA     K+R
Sbjct: 234 YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMR 293



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 32/71 (45%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL   T TFNIM+  L K    D A  +F     +G VP   TY ++ + +   G L   
Sbjct: 646 DLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEEL 705

Query: 65  RWILKELGDSG 75
             +   + D+G
Sbjct: 706 DQLFFSMEDNG 716


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 149/311 (47%), Gaps = 2/311 (0%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   T+  ++NG C+    D A ++ + +  HG  P  V+Y  L+ G+C+ G+   
Sbjct: 448 GHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLE 507

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           AR ++    +   +PN+ITY+ IM    R  K     +++  M  KG+         ++ 
Sbjct: 508 AREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQ 567

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +  + GR  EA  +ME+ +  G  +++V++ T+I+ +C+  +L+AA  +LD+M       
Sbjct: 568 SLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHA 627

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +T+T L+D L K G I  A   ++ M   G D     Y  ++ R  + GK+D  + + 
Sbjct: 628 DVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAIL 687

Query: 244 ESM--EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           E M    K    Y+ ++  LC   +L  A  LL   L++  R       A+++G    G 
Sbjct: 688 EKMISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGV 747

Query: 302 RREAKKIQSKI 312
              A K+  ++
Sbjct: 748 PLSAYKVACRM 758



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 142/285 (49%), Gaps = 6/285 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M+ G C     + A+ +   +   G +P+ V+Y  ++  LCK  R+   R
Sbjct: 308 IVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVR 367

Query: 66  WILKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++K++  + G  P+ +TY T++    ++      L  L   + KG+  D  GY  ++ A
Sbjct: 368 DLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHA 427

Query: 125 FVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             K GR+ EA D + +M++ G    D+V+Y  ++N +C+ G+++ A  LL  M   G + 
Sbjct: 428 LCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKP 487

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  ++T L++G+C+ G    AR  +    +  +  N   Y+ I+  L ++GK+  A +V 
Sbjct: 488 NTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVV 547

Query: 244 ESMEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             M +K  F      + ++ +LC+  R   A K +  CL  G  I
Sbjct: 548 REMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAI 592



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 140/293 (47%), Gaps = 5/293 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++ L K+ + D AL   +  Q+ GF  + + Y+ ++  LCK GR+  A+
Sbjct: 379 LVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAK 438

Query: 66  WILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++ E+   GH  P+ +TYT ++    R  +     ++L  M   G+  +   Y  ++  
Sbjct: 439 DLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNG 498

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + G+  EA + M          + ++Y+ +++   +EGKL  A  ++ EM  +GF   
Sbjct: 499 MCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPG 558

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
                +L+  LC+ G    AR  +E     G   N+  +  ++    ++ ++D A++V +
Sbjct: 559 PVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD 618

Query: 245 SMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            M +     D FTY+++V  L K  R+  A++L+   L  G+       + V+
Sbjct: 619 DMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVI 671



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 139/299 (46%), Gaps = 6/299 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ML  L K +    + R+   +++ G       ++ ++    +AG+LR A  +L  +  +G
Sbjct: 213 MLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAG 272

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             PN +   T +    R  + +  L  L  M+  G   +   Y  +I  +  + R++EA 
Sbjct: 273 VEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAI 332

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDG 194
           + +E M + G   D VSY T++   CKE ++     L+ +M K+ G   D+ T+  LI  
Sbjct: 333 ELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHM 392

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----- 249
           L K  +   A   L+   + GF  +   Y+ IV  L K+G++  A ++   M  K     
Sbjct: 393 LTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPP 452

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           D  TY+++V+  C+   +  A KLL      G +    +  A+++G+  +G   EA+++
Sbjct: 453 DVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREM 511



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 7/238 (2%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P  + Y ++++   + +  +    +L  MKR+G       +  V+ ++ + G+L++A 
Sbjct: 205 HDP--MVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDAL 262

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             +  M   GV+ +++  NT I+++ +  +LE A   L+ M+  G   +  T+  +I G 
Sbjct: 263 KVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGY 322

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-----VKD 250
           C    ++ A   LE M+  G   +  +Y  I+  L K+ +I    ++ + M      V D
Sbjct: 323 CDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPD 382

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             TY++++H L K      A   L    + G RI K    A+V  L   G   EAK +
Sbjct: 383 QVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDL 440



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 2/199 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P     N++L  LC++  T  A +        G    +V +  +I G C+   
Sbjct: 550 MVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDE 609

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L ++       +  TYTT++    +  +     E++  M  KG       Y T
Sbjct: 610 LDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRT 669

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  + ++G++ +    +E+M++      I  YN +I   C  GKLE A  LL ++ +  
Sbjct: 670 VIHRYCQMGKVDDLVAILEKMISRQKCRTI--YNQVIEKLCVLGKLEEADTLLGKVLRTA 727

Query: 181 FECDKYTHTILIDGLCKAG 199
              D  T   L++G  K G
Sbjct: 728 SRSDAKTCYALMEGYLKKG 746



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 4/168 (2%)

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           Y  D   Y +++    K    + +   +  M   G+     +++ ++  Y + G+L  A 
Sbjct: 203 YRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDAL 262

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +L  M++ G E +       ID   +A  ++ A   LE M  +G   N+  YNC++   
Sbjct: 263 KVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGY 322

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
               +++ AI + E M  K    D  +Y +++  LCK KR+     L+
Sbjct: 323 CDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLM 370


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 159/319 (49%), Gaps = 13/319 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   TF  +++G CK    + A+ +++ +++      +VTY  LI G CK G ++ A 
Sbjct: 194 LSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAE 253

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + +    PN++ YTTI+   F+       ++ L+ M  +G   D   Y  +I+  
Sbjct: 254 EMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGL 313

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+LKEAT+ +E M    +  D+V + T++N Y K G+++AA  +  ++ ++GFE D 
Sbjct: 314 CGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDV 373

Query: 186 YTHTILIDGLCKAGNIKGARLH--LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              + +IDG+ K G +  A ++  +E  N +        Y  ++D L K+G       +F
Sbjct: 374 VALSTMIDGIAKNGQLHEAIVYFCIEKANDV-------MYTVLIDALCKEGDFIEVERLF 426

Query: 244 ----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
               E+  V D F Y+S +  LCK   L  A KL    ++ G+ +   A   ++ GL   
Sbjct: 427 SKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASK 486

Query: 300 GCRREAKKIQSKIRMAKIS 318
           G   EA+++  ++  + IS
Sbjct: 487 GLMVEARQVFDEMLNSGIS 505



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 154/340 (45%), Gaps = 41/340 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP  ++FN +++ +CK      A  +   + + G  P++++YN LI G C+ G +R+A  
Sbjct: 53  TPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASL 112

Query: 67  ILKELGDSGH-------------------------------------APNAITYTTIMKC 89
           +L+ L  S                                       +PN +TY+T +  
Sbjct: 113 VLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDT 172

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             ++ + +L L+   +MKR   + +   +  +I  + K G L+ A    ++M    + L+
Sbjct: 173 FCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLN 232

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +V+Y  LI+ +CK+G+++ A  +   M +   E +   +T +IDG  + G+   A   L 
Sbjct: 233 VVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLA 292

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M   G   ++ AY  I+  L  +GK+  A  + E ME    V D   +++M++   K+ 
Sbjct: 293 KMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSG 352

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           R+ +A  +    ++ G      A   ++DG+  +G   EA
Sbjct: 353 RMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEA 392



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 11/287 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P +  +  +++G  +   +DNA++    +   G   ++  Y ++I GLC  G+
Sbjct: 259 MVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGK 318

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  I++++  S   P+ + +TT+M   F++ + K  + +   +  +G+  D     T
Sbjct: 319 LKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALST 378

Query: 121 VIAAFVKIGRLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I    K G+L EA  Y   +   D      V Y  LI+  CKEG       L  ++ + 
Sbjct: 379 MIDGIAKNGQLHEAIVYFCIEKAND------VMYTVLIDALCKEGDFIEVERLFSKISEA 432

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   DK+ +T  I GLCK GN+  A      M + G   +L AY  ++  L   G +  A
Sbjct: 433 GLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEA 492

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             VF+ M       DS  +  ++    K   + +AS LLL   + G+
Sbjct: 493 RQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQRRGL 539



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 10/288 (3%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           +L+    L   G+ P   ++N ++  +CK G+++ A  I+  +   G  P+ I+Y +++ 
Sbjct: 40  SLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLID 99

Query: 89  CCFRN---RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
              RN   R   L LE L A        D   + ++   F K+  L E   YM  M+   
Sbjct: 100 GHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLK-C 158

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
              ++V+Y+T I+ +CK G+L+ A      M++     +  T T LIDG CKAG+++ A 
Sbjct: 159 CSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAV 218

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-----SFTYSSMVHN 260
              + M ++    N+  Y  ++D   K G++  A  ++  M V+D     S  Y++++  
Sbjct: 219 SLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRM-VEDRVEPNSLVYTTIIDG 277

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             +     +A K L   L  G+R+  +A   ++ GL  +G  +EA +I
Sbjct: 278 FFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEI 325



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            DL P    F  M+N   K+     A+ M+  L + GF P++V  + +I G+ K G+L  
Sbjct: 332 SDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHE 391

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A              N + YT ++    +   +     + S +   G   D F Y + IA
Sbjct: 392 AIVYF-----CIEKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIA 446

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G L +A     +MV +G+ LD+++Y TLI     +G +  A  + DEM   G   
Sbjct: 447 GLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISP 506

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           D     +LI    K GN+  A   L  M + G  + +   +C
Sbjct: 507 DSAVFDLLIRAYEKEGNMAAASDLLLDMQRRGLVTAVSDADC 548



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 125/293 (42%), Gaps = 41/293 (13%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A   L  L  S + P+  T    +     +    L L+ L+ +  +GYT     + +
Sbjct: 2   VREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFNS 61

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-KQ 179
           V++   K+G++K A D +  M   G + D++SYN+LI+ +C+ G + +A L+L+ +    
Sbjct: 62  VVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASH 121

Query: 180 GFEC------------------------------------DKYTHTILIDGLCKAGNIKG 203
           GF C                                    +  T++  ID  CK+G ++ 
Sbjct: 122 GFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQL 181

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-EVKDSF---TYSSMVH 259
           A      M +     N+  + C++D   K G ++ A+++++ M  V+ S    TY++++ 
Sbjct: 182 ALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALID 241

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             CK   +  A ++    ++  V         ++DG    G    A K  +K+
Sbjct: 242 GFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM 294


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 144/317 (45%), Gaps = 42/317 (13%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +N++++GLCK        ++   +   G VP  VTYN LI GLC  G+L  A  
Sbjct: 254 SPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVS 313

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ +  S   PN +TY T++    + R+    + +LS+M+ +GY  +   Y  +I+   
Sbjct: 314 LLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLF 373

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL-------------------- 166
           K G+ +EA     +M   G + +IV Y+ L++  C+EGK                     
Sbjct: 374 KEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAY 433

Query: 167 ---------------EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                          E A  +  EM+K G   +K+ +++LIDGLC  G +K A +    M
Sbjct: 434 TYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKM 493

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-------EVKDSFTYSSMVHNLCKA 264
             IG   +  AY+ I+  L   G +D A+ ++  M          D  TY+ ++  LC  
Sbjct: 494 LTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQ 553

Query: 265 KRLPSASKLLLSCLKSG 281
           K +  A  LL S L  G
Sbjct: 554 KDISRAVDLLNSMLDRG 570



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 157/312 (50%), Gaps = 4/312 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P   +FN+++  LCK R+ D A+ +FRG+ +   +P+  TY  L+ GLCK  R+  A
Sbjct: 182 NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEA 241

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+   G +P+ + Y  ++    +        +++  M  KG   +   Y T+I  
Sbjct: 242 VLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHG 301

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G+L +A   +E+MV+     + V+Y TLIN   K+ +   A  LL  ME++G+  +
Sbjct: 302 LCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLN 361

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           ++ +++LI GL K G  + A      M + G   N+  Y+ +VD L ++GK + A  +  
Sbjct: 362 QHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILN 421

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M     + +++TYSS++    K      A ++     K+G    K     ++DGL   G
Sbjct: 422 RMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVG 481

Query: 301 CRREAKKIQSKI 312
             +EA  + SK+
Sbjct: 482 RVKEAMMVWSKM 493



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 148/333 (44%), Gaps = 63/333 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF------------------- 41
           M+     P   T+  ++NGL K R   +A+R+   +++ G+                   
Sbjct: 318 MVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGK 377

Query: 42  ----------------VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                            P +V Y++L+ GLC+ G+   A+ IL  +  SG  PNA TY++
Sbjct: 378 AEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSS 437

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +MK  F+    +  +++   M + G + + F Y  +I     +GR+KEA     +M+T G
Sbjct: 438 LMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIG 497

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEM---EKQGFECDKYTHTILIDGLCKAGNIK 202
           ++ D V+Y+++I   C  G ++AA  L  EM   E+   + D  T+ IL+DGLC   +I 
Sbjct: 498 IKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDIS 557

Query: 203 GARLHLEYMNKIGFDSNLEAYNC---------------------IVDRLGKDGKIDHAIN 241
            A   L  M   G D ++   N                      +V RL K  ++  A  
Sbjct: 558 RAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACT 617

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           + E M  K     + T++ +V  +CK K++ +A
Sbjct: 618 IVEVMLGKYLAPKTSTWAMIVREICKPKKINAA 650



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 14/293 (4%)

Query: 34  RGLQKHGFV----------PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 83
           RGL+ + +V          P  +++N++IK LCK   +  A  + + + +    P+  TY
Sbjct: 166 RGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTY 225

Query: 84  TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
            T+M    +  +    + +L  M+ +G +     Y  +I    K G L   T  ++ M  
Sbjct: 226 CTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFL 285

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            G   + V+YNTLI+  C +GKL+ A  LL+ M       +  T+  LI+GL K      
Sbjct: 286 KGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATD 345

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVH 259
           A   L  M + G+  N   Y+ ++  L K+GK + A++++  M  K    +   YS +V 
Sbjct: 346 AVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVD 405

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            LC+  +   A ++L   + SG         +++ G   +G   EA ++  ++
Sbjct: 406 GLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEM 458


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 119/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N      +EI   M  +G++ D   Y T+I   
Sbjct: 227 ELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+    +++M  +G++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDN 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T L+ GLC+ G    A      M  +G   +   Y  I++   K G +  A  + + 
Sbjct: 347 VAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 137/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N L+ G  + G L     +   + 
Sbjct: 139 FNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+ + M  +G   +G  + T+I    K G + 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++ G   D+++YNTLI   CK+G L+    L+DEM   G + DK T+T LI
Sbjct: 259 SAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           DG CK G+++ A    + M K     +  AY  +V  L ++G+ D A  +F  M      
Sbjct: 319 DGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   + +AS+LL    + G
Sbjct: 379 PDNGTYTMIINEFCKKGDVRTASRLLKEMQRDG 411



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 146/303 (48%), Gaps = 6/303 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NI++   CK G +R A+ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++ EA 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +   +M+  G+  + V++ TLI+++CK G +++A  +  +M  QGF  D  T+  LI GL
Sbjct: 227 ELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K  R  ++ M+  G   +   Y  ++D   K+G ++ A       + ES+ + D
Sbjct: 287 CKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRL-D 345

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           +  Y+++V  LC+  R   A K+    L  G++        +++     G  R A ++  
Sbjct: 346 NVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLK 405

Query: 311 KIR 313
           +++
Sbjct: 406 EMQ 408



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 111/210 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+++++NGLCK    D A  +F  +   G VP  VT+  LI   CK G + +A 
Sbjct: 202 VQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAM 261

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I K++   G +P+ ITY T++    +    K    ++  M   G   D   Y T+I   
Sbjct: 262 EIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGC 321

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L+ A ++ ++M+ + ++LD V+Y  L++  C+EG+ + A  +  EM   G + D 
Sbjct: 322 CKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDN 381

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            T+T++I+  CK G+++ A   L+ M + G
Sbjct: 382 GTYTMIINEFCKKGDVRTASRLLKEMQRDG 411



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 137/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A++ FR  +KH F     T   +++ L K    +      KE+ 
Sbjct: 69  FSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEIL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +    +  A+ + G       + T++  ++++G L 
Sbjct: 129 ECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L +EM  +G   +  T T LI
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           D  CK G +  A    + M   GF  +L  YN ++  L K G +     + + M +    
Sbjct: 249 DVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLK 308

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A+V GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKM 368



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+    D+A +MFR +   G  P+  TY ++I   CK G +RTA  +LKE
Sbjct: 347 VAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GH P  +T
Sbjct: 407 MQRDGHVPCVVT 418



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK    + A    + + K     + V Y  L+ GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAE 366

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
            + +E+   G  P+  TYT I+    +    +    +L  M+R G+
Sbjct: 367 KMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGH 412


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 141/273 (51%), Gaps = 10/273 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++I+++GLCK    D A  +F+ ++  G +P++++Y  LI G C++G+ + A+++
Sbjct: 481 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 540

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ D G  P+  T++ ++    +  K     E+L  M ++G   +   Y T++     
Sbjct: 541 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 600

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------GF 181
             R+ EAT    +M   G   D+V+Y TL+   C+ G ++ A  L  +M          F
Sbjct: 601 NDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNF 660

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           + D  +++I+IDGLCK G    AR   + M  +G   N+ +Y  ++    + GK++ A +
Sbjct: 661 KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKH 720

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           +F  M  +    ++ TYS M+H  CK  ++  A
Sbjct: 721 LFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 16/317 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNAL----RMFRGLQKHGFV--PELVTYNILIKGLCKAGRL 61
           P    +  ++ GLC+    + AL     M     ++G    P LV+Y+I+I GLCK  R 
Sbjct: 78  PDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRRE 137

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             AR + KE+   G  P+ I+YT+++    R+ K++    + + M   G   D      +
Sbjct: 138 DEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSML 197

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    K G++ EA + +E M+  G  LDIV+Y+TLI   C + ++  A  L   M+K G 
Sbjct: 198 IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGC 257

Query: 182 ECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIG-----FDSNLEAYNCIVDRLGKDGK 235
             D   +  L+ GLC+ GNI  A +LH E +N  G         L +Y+ I+D L KD +
Sbjct: 258 RPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 317

Query: 236 IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
            D A  +F+ M+ +    D  +Y++++H  C + +   A  L    L  G++   +    
Sbjct: 318 EDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSV 377

Query: 292 VVDGLRHSGCRREAKKI 308
           ++D L   G   EA K+
Sbjct: 378 LIDMLCKKGKVIEANKL 394



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 153/309 (49%), Gaps = 16/309 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGL----QKHGF--VPELVTYNILIKGLCKAGRL 61
           P   T   ++ GLC++     AL + + +      +G    P  ++Y+I+I GLCK GR 
Sbjct: 440 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 499

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             AR + KE+   G  P+ I+YT+++    R+ K+K    + + M   G   D   +  +
Sbjct: 500 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 559

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    K G++ EA + +E M+  G   + V+Y TL+   C   ++  A  L  +M+K G 
Sbjct: 560 IDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGC 619

Query: 182 ECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIG-----FDSNLEAYNCIVDRLGKDGK 235
             D  T+  L+ GLC+ GNIK A  LH + ++  G     F  ++ +Y+ I+D L K G+
Sbjct: 620 LPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGR 679

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
            D A  +F+ M+    + +  +Y+S++H  C++ +L  A  L    +  GV++       
Sbjct: 680 EDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSV 739

Query: 292 VVDGLRHSG 300
           ++ G    G
Sbjct: 740 MIHGFCKEG 748



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 151/319 (47%), Gaps = 16/319 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T +++++ LCK      A ++   + + G +P++VT   L+KGLC   R+  A 
Sbjct: 368 IQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKAT 427

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF------DGFGYC 119
            +  ++   G  PN +T  T+MK   ++   K+ LE+   M      +      +   Y 
Sbjct: 428 QLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYS 487

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    K GR  EA +  ++M   GV  D++SY +LI+ +C+ GK + A  L +EM   
Sbjct: 488 IIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDI 547

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D  T ++LID LCK G +  A   LE M + G   N   Y  +V  L  + +I  A
Sbjct: 548 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 607

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSA----SKLLLSCLKSGVRILKS--AQ 289
             +F  M+    + D  TY +++  LC+   + +A     K+L    + G        + 
Sbjct: 608 TQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISY 667

Query: 290 KAVVDGLRHSGCRREAKKI 308
             ++DGL   G   EA+++
Sbjct: 668 SIIIDGLCKHGREDEAREL 686



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 149/317 (47%), Gaps = 16/317 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   ++ GLC       A ++F  +QK G +P +VT   L+KGLC++G ++ A  +
Sbjct: 405 PDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALEL 464

Query: 68  LKE-LGDSGH-----APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
            K  L D+        PNAI+Y+ I+    +  +     E+   MK  G   D   Y ++
Sbjct: 465 HKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSL 524

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F + G+ K+A     +MV  GVQ D+ +++ LI++ CKEGK+  A  LL+ M ++G 
Sbjct: 525 IHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGC 584

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             +  T+T L+ GLC    I  A      M K+G   ++  Y  ++  L + G I  A+ 
Sbjct: 585 IPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALE 644

Query: 242 VFESMEV----------KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           + + M             D  +YS ++  LCK  R   A +L       GV     +  +
Sbjct: 645 LHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTS 704

Query: 292 VVDGLRHSGCRREAKKI 308
           ++ G   SG   +AK +
Sbjct: 705 LIHGFCRSGKLEDAKHL 721



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 164/351 (46%), Gaps = 47/351 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG------------- 54
           P   +++I+++GLCK+R  D A  +F+ ++  G +P++++Y  LI G             
Sbjct: 300 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 359

Query: 55  ----------------------LCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCF 91
                                 LCK G++  A  +L+ +   G  P+ +T TT++K  C 
Sbjct: 360 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCM 419

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI- 150
           ++R  K   ++   M++ G   +     T++    + G +K A +  + M++D     I 
Sbjct: 420 KHRISK-ATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGIN 478

Query: 151 -----VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                +SY+ +I+  CK G+ + A  L  EM+  G   D  ++T LI G C++G  K A+
Sbjct: 479 CKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAK 538

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                M  IG   ++  ++ ++D L K+GK+  A  + E M     + ++ TY+++V  L
Sbjct: 539 YLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGL 598

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           C   R+  A++L +   K G          ++ GL  +G  + A ++  K+
Sbjct: 599 CMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKM 649



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 10/278 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T  ++++  CK      A  +   + + G + ++VTY+ LIKGLC   R+  A 
Sbjct: 6   IQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEAT 65

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL----EILSAMKRKGYTFDG--FGYC 119
            +   +   G  P+AI Y T+MK   +  K  + L    E+L+   + G         Y 
Sbjct: 66  QLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYS 125

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    K  R  EA +  ++M   G+  D++SY +LI+ +C+ GK E A  L +EM   
Sbjct: 126 IIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDV 185

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T ++LID LCK G +  A   LE M + G   ++  Y+ ++  L    +I  A
Sbjct: 186 GIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEA 245

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKL 273
             +F SM+      D+  Y +++  LC+   + +A +L
Sbjct: 246 TRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQL 283



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 134/271 (49%), Gaps = 10/271 (3%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           G  P++ T  +LI   CK G++  A  +L+ +   G   + +TY+T++K      +    
Sbjct: 5   GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEA 64

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI------VSY 153
            ++  +MK+ G   D   Y T++    + G++  A    ++M+ D  Q  I      VSY
Sbjct: 65  TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSY 124

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           + +I+  CK+ + + A  L  EM+ QG   D  ++T LI G C++G  + A+     M  
Sbjct: 125 SIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLD 184

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPS 269
           +G  S++   + ++D L K+GK+  A  + E M     + D  TYS+++  LC   R+  
Sbjct: 185 VGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISE 244

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           A++L +S  K G R    A   ++ GL  +G
Sbjct: 245 ATRLFMSMQKLGCRPDAIAYGTLMKGLCQTG 275



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 152/317 (47%), Gaps = 16/317 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALR----MFRGLQKHGFV--PELVTYNILIKGLCKAGRL 61
           P    +  ++ GLC+    + AL+    M     ++G    P L++Y+I+I GLCK  R 
Sbjct: 259 PDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRE 318

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             AR + KE+   G  P+ I+YTT++     + K++    + + M   G   D      +
Sbjct: 319 DEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVL 378

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    K G++ EA   +E ++  G   D+V+  TL+   C + ++  A  L  +M+K G 
Sbjct: 379 IDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGC 438

Query: 182 ECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNK-----IGFDSNLEAYNCIVDRLGKDGK 235
             +  T   L+ GLC++GNIK A  LH   ++      I    N  +Y+ I+D L K G+
Sbjct: 439 MPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGR 498

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
            D A  +F+ M+    + D  +Y+S++H  C++ +   A  L    +  GV+   +    
Sbjct: 499 EDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSV 558

Query: 292 VVDGLRHSGCRREAKKI 308
           ++D L   G   EA ++
Sbjct: 559 LIDMLCKEGKVIEANEL 575



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 152/338 (44%), Gaps = 45/338 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG------------- 54
           P   +++I+++GLCK+R  D A  +F+ ++  G +P++++Y  LI G             
Sbjct: 119 PTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCL 178

Query: 55  ----------------------LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                                 LCK G++  A  +L+ +   G   + +TY+T++K    
Sbjct: 179 FNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCM 238

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL 148
             +      +  +M++ G   D   Y T++    + G +  A    ++M+ D    G++ 
Sbjct: 239 KHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKC 298

Query: 149 --DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
              ++SY+ +I+  CK+ + + A  L  EM+ QG   D  ++T LI G C +G  + A+ 
Sbjct: 299 KPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKC 358

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
               M  +G   ++   + ++D L K GK+  A  + E +     + D  T +++V  LC
Sbjct: 359 LFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLC 418

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
              R+  A++L L   K G          ++ GL  SG
Sbjct: 419 MKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSG 456



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 8/176 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+  ++ GLC N     A ++F  +QK G +P++VTY  L+KGLC+ G ++TA  +
Sbjct: 586 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALEL 645

Query: 68  LKE-LGDSGH-----APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
            K+ L D+G       P+ I+Y+ I+    ++ +     E+   MK  G   +   Y ++
Sbjct: 646 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 705

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           I  F + G+L++A     +MV  GVQL+ V+Y+ +I+ +CKEG+++ A  L  +ME
Sbjct: 706 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKME 759



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 10/199 (5%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I  F K G++ EA + +E MV  G  LDIV+Y+TLI   C + ++  A  L   M+K 
Sbjct: 15  VLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL 74

Query: 180 GFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNK-----IGFDSNLEAYNCIVDRLGKD 233
           G   D   +  L+ GLC+ G I  A  LH E +N      I     L +Y+ I+D L KD
Sbjct: 75  GCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKD 134

Query: 234 GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            + D A  +F+ M+ +    D  +Y+S++H  C++ +   A  L    L  G+R   +  
Sbjct: 135 RREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTS 194

Query: 290 KAVVDGLRHSGCRREAKKI 308
             ++D L   G   EA ++
Sbjct: 195 SMLIDILCKEGKVIEANEL 213



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           M+  G+Q D+ +   LI+++CKEGK+  A  LL+ M ++G   D  T++ LI GLC    
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS--------- 251
           I  A      M K+G   +  AY  ++  L + GKI+ A+++ + M    S         
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 252 -FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
             +YS ++  LCK +R   A +L       G+     +  +++ G   SG   +AK
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAK 176


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 140/282 (49%), Gaps = 5/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    F  +++ LCK   T  A ++   + + G  P +VTYN+LI  LCK G +R A 
Sbjct: 224 IKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREAL 283

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCTVIA 123
            + KE+ D G AP+ +TY T++       +    +  L  M +       D   + +VI 
Sbjct: 284 TLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIH 343

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              KIGR+ +A    E M   G   ++V+YN LI  + +  K++ A  L+DE+   G E 
Sbjct: 344 GLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEP 403

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +T++ILI+G  K   +  A   L  M + G  + L  Y  ++  + + G ++ A+ +F
Sbjct: 404 DSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLF 463

Query: 244 ESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             M+     D+  YS+M+H  CK+  + +  +L+   L  G+
Sbjct: 464 NEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGL 505



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 144/317 (45%), Gaps = 41/317 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  ++ GLC +R T  A+ + R +Q  G   ++VTY  LI+GLC A  L  A  +
Sbjct: 121 PNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALEL 180

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+  SG  PN + Y+ +++   R+ +++   ++   M R+G   D   +  +I    K
Sbjct: 181 LDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCK 240

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +A    + MV  G++ ++V+YN LIN  CKEG +  A  L  EM+ +G   D  T
Sbjct: 241 EGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVT 300

Query: 188 HTIL-------------------------------------IDGLCKAGNIKGARLHLEY 210
           +  L                                     I GLCK G +  A    E 
Sbjct: 301 YNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREM 360

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M + G   NL  YN ++    +  K+  A+N+ + + +     DSFTYS +++   K   
Sbjct: 361 MAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWE 420

Query: 267 LPSASKLLLSCLKSGVR 283
           +  A K L +  + G++
Sbjct: 421 VDRAEKFLCTMRQRGIK 437



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 42  VPELVTYNILIKGLCKAG--RLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRKY 96
           V + V+YN ++  LC+ G   LR AR +L ++    H    PNA++YTT+M+    +R+ 
Sbjct: 80  VRDAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRT 139

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
              + +L +M+  G   D   Y T+I        L  A + +++M   GVQ ++V Y+ L
Sbjct: 140 GEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCL 199

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           +  YC+ G+ +    + ++M ++G + D    T LID LCK G    A    + M + G 
Sbjct: 200 LRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGL 259

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK 272
           + N+  YN +++ L K+G +  A+ + + M+ K    D  TY++++  L     +  A  
Sbjct: 260 EPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMS 319

Query: 273 LL 274
            L
Sbjct: 320 FL 321



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 138/276 (50%), Gaps = 6/276 (2%)

Query: 1   MICGD--LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           MI GD  + P   TFN +++GLCK      A+++   + + G +  LVTYN LI G  + 
Sbjct: 324 MIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRV 383

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
            +++ A  ++ EL  SG  P++ TY+ ++    +  +     + L  M+++G   + F Y
Sbjct: 384 HKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHY 443

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             ++AA  + G ++ A     +M      LD ++Y+T+I+  CK G ++    L+ +M  
Sbjct: 444 IPLLAAMCQQGMMERAMGLFNEM-DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLD 502

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D  T+++LI+   K G+++ A   L+ M   GF  ++  ++ ++     +G+ D 
Sbjct: 503 EGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDK 562

Query: 239 AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + +   M  K+      ++  +    RLP  + LL
Sbjct: 563 VLKLIHEMRAKNVAFDPKIISTII---RLPQQTPLL 595



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 44/300 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI-------- 52
           M+   L P   T+N+++N LCK      AL + + +   G  P++VTYN LI        
Sbjct: 254 MVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLE 313

Query: 53  -----------------------------KGLCKAGRLRTARWILKELGDSGHAPNAITY 83
                                         GLCK GR+  A  + + + + G   N +TY
Sbjct: 314 MDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTY 373

Query: 84  TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
             ++    R  K K+ + ++  +   G   D F Y  +I  F K+  +  A  ++  M  
Sbjct: 374 NYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQ 433

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCKAGNIK 202
            G++ ++  Y  L+   C++G +E A  L +EM+K  G   D   ++ +I G CK+G++K
Sbjct: 434 RGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGL--DAIAYSTMIHGACKSGDMK 491

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 258
             +  ++ M   G   +   Y+ +++   K G ++ A  V + M     V D   + S++
Sbjct: 492 TVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLI 551



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 44/208 (21%)

Query: 149 DIVSYNTLINLYCKEG----------------------------------------KLEA 168
           D VSYNT++   C+ G                                        +   
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  LL  M+  G   D  T+  LI GLC A  +  A   L+ M   G   N+  Y+C++ 
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLR 201

Query: 229 RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
              + G+      VFE M  +    D   ++ ++ +LCK  +   A+K+    ++ G+  
Sbjct: 202 GYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEP 261

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKI 312
                  +++ L   G  REA  ++ ++
Sbjct: 262 NVVTYNVLINSLCKEGSVREALTLRKEM 289


>gi|48716454|dbj|BAD23061.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           [Oryza sativa Japonica Group]
          Length = 580

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +ALR+F  ++    VP+    + L+  L K+    TAR +  ++  +G A N   Y  ++
Sbjct: 128 DALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAML 187

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
             C +     L   +++ M   G   D F + TVIA + + G   EA    E+M   GV+
Sbjct: 188 HVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVK 247

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D+V++N+LI+  CKE +++ A  LL EM   G   D  T+T L+DG C+AG+++ A   
Sbjct: 248 ADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKL 307

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKI-----------------DHA-----INVF-- 243
              M  +G    +  YN I+ +L +DGK+                 DH      IN +  
Sbjct: 308 RGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCK 367

Query: 244 -----ESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
                 +++VK          D FTY ++VH  CKAK L  A + L   + +G     S 
Sbjct: 368 RGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSV 427

Query: 289 QKAVVDGL 296
              +VDGL
Sbjct: 428 LSWIVDGL 435



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 120/250 (48%), Gaps = 4/250 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++GLCK R    A ++ R +   G  P+ VTY  L+ G C+AG L  A  +  E+
Sbjct: 252 TWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEM 311

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   TY  I++    + K K    +L+ M  +    D     T+I A+ K G +
Sbjct: 312 EAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDM 371

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A     +M+  G+QLD  +Y  L++ +CK  +L+ A   L EM   GF  +    + +
Sbjct: 372 TSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWI 431

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +DGLC   N        + + K GF  +   Y  ++ RL K G ID A NVF  M+ K  
Sbjct: 432 VDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQGKGL 491

Query: 250 --DSFTYSSM 257
             D   Y+++
Sbjct: 492 EADCLVYATL 501



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 4/256 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN ++   C+      A+ +   ++  G   ++VT+N LI GLCK  R++ A  +L+E+
Sbjct: 217 SFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREM 276

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G AP+ +TYTT++    R    +  +++   M+  G       Y  ++    + G++
Sbjct: 277 AMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKM 336

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           KE    + +M    VQ D V+ NTLIN YCK G + +A  +   M + G + D++T+  L
Sbjct: 337 KEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKAL 396

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           + G CKA  +  A+  L  M   GF  N    + IVD L         + + + +  +  
Sbjct: 397 VHGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGF 456

Query: 250 --DSFTYSSMVHNLCK 263
             D   Y S++  LCK
Sbjct: 457 PPDKAVYRSLIRRLCK 472



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 115/262 (43%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+  +++G C+    + A+++   ++  G +P + TYN +++ LC+ G+
Sbjct: 276 MAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGK 335

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++    +L E+ +     + +T  T++    +       L++   M   G   D F Y  
Sbjct: 336 MKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKA 395

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F K   L EA + + +M+  G   +    + +++  C +    A   + DE+ K+G
Sbjct: 396 LVHGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRG 455

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  DK  +  LI  LCK G I  A      M   G +++   Y  +       GK   A+
Sbjct: 456 FPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQGKGLEADCLVYATLACAYLTAGKPVAAL 515

Query: 241 NVFESMEVKDSFTYSSMVHNLC 262
           ++   M  K  +    + + +C
Sbjct: 516 DILNEMAKKQLYITPQIYNCMC 537



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 33/215 (15%)

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            L +   M+ +    D      ++ A  K      A    +QM   GV ++   YN +++
Sbjct: 129 ALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLH 188

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           +  K G    A  L+  M+  G   D+++   +I   C+ G      +  E M       
Sbjct: 189 VCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKG------MQYEAM------- 235

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
                 C+ +R+   G             VK D  T++S++H LCK +R+  AS+LL   
Sbjct: 236 ------CVRERMENQG-------------VKADVVTWNSLIHGLCKERRVKEASQLLREM 276

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             +GV         +VDG   +G   EA K++ ++
Sbjct: 277 AMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEM 311


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 135/272 (49%), Gaps = 7/272 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++ LCKN + DNAL +F  ++ +G  P++V Y  L+ GLC +GR R A 
Sbjct: 172 IKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 231

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ +      P+ IT+  ++    +  K     E+ + M +     + F Y ++I   
Sbjct: 232 LLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGL 291

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GRL EA      M T G   D+V+Y +LIN +CK  K+E A  +  EM ++G   + 
Sbjct: 292 CMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNT 351

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI G    G    A+    +M   G   N+  YN ++  L  +GK++ A+ +FE 
Sbjct: 352 ITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFED 411

Query: 246 MEVKD-------SFTYSSMVHNLCKAKRLPSA 270
           M+ ++         TY+ ++H LC   +L  A
Sbjct: 412 MQKREIDGVPPNIRTYNVLLHGLCYNGKLEKA 443



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 15/293 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++NG C     + A+ M   + + G  P++V Y  +I  LCK G +  A  +
Sbjct: 139 PDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSL 198

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ + G  P+ + YT+++     + +++    +L  M ++    D   +  +I AFVK
Sbjct: 199 FNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVK 258

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L +A +   +M+   +  +I +Y +LIN  C EG+L+ A  +   ME +G   D   
Sbjct: 259 EGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVA 318

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LI+G CK   ++ A      M++ G   N   Y  ++   G  GK + A  VF  M 
Sbjct: 319 YTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMV 378

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +    +  TY+ ++H LC   ++  A           + I +  QK  +DG+
Sbjct: 379 SRGVPPNIRTYNVLLHCLCYNGKVNKA-----------LMIFEDMQKREIDGV 420



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 139/284 (48%), Gaps = 7/284 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN +++   K     +A  ++  + +    P + TY  LI GLC  GRL  AR
Sbjct: 242 IKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEAR 301

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G  P+ + YT+++    + +K +  ++I   M +KG T +   Y T+I  F
Sbjct: 302 QMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGF 361

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFE 182
             +G+   A +    MV+ GV  +I +YN L++  C  GK+  A ++ ++M+K+   G  
Sbjct: 362 GLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVP 421

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+ +L+ GLC  G ++ A +    M K   D  +  Y  I+  + K GK+  A+N+
Sbjct: 422 PNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNL 481

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           F S+  K    +  TY++M+  L +   +  A  L     + GV
Sbjct: 482 FCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGV 525



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 129/262 (49%), Gaps = 8/262 (3%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +  DL  C    N+++N  C++     A      L K GF P++ T+  LI G C   R+
Sbjct: 102 VSNDLYTC----NLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRI 157

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  ++ ++ + G  P+ + YTTI+    +N      L + + M+  G   D   Y ++
Sbjct: 158 EEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSL 217

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           +      GR ++A   +  M+   ++ D++++N LI+ + KEGKL  A  L +EM +   
Sbjct: 218 VNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSI 277

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             + +T+T LI+GLC  G +  AR     M   G   ++ AY  +++   K  K++ A+ 
Sbjct: 278 APNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMK 337

Query: 242 VFESMEVK----DSFTYSSMVH 259
           +F  M  K    ++ TY++++ 
Sbjct: 338 IFYEMSQKGLTGNTITYTTLIQ 359



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 132/280 (47%), Gaps = 6/280 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +LN + K +  D  + + + LQ  G   +L T N+L+   C++ +   A   
Sbjct: 69  PSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSF 128

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L +L   G  P+  T+T+++   C  NR  +  + +++ M   G   D   Y T+I +  
Sbjct: 129 LGKLMKLGFEPDIFTFTSLINGFCLGNR-IEEAMSMVNQMVEMGIKPDVVIYTTIIDSLC 187

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G +  A     QM   G++ D+V Y +L+N  C  G+   A LLL  M K+  + D  
Sbjct: 188 KNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVI 247

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   LID   K G +  A+     M ++    N+  Y  +++ L  +G++D A  +F  M
Sbjct: 248 TFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLM 307

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           E K    D   Y+S+++  CK K++  A K+     + G+
Sbjct: 308 ETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGL 347



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 131/264 (49%), Gaps = 5/264 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           I+ NGL   ++ + AL +F  + +   +P ++ +  L+  + K  +      + K L   
Sbjct: 42  ILRNGLHSLQFNE-ALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIM 100

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G + +  T   +M C  ++ +  L    L  + + G+  D F + ++I  F    R++EA
Sbjct: 101 GVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEA 160

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              + QMV  G++ D+V Y T+I+  CK G ++ A  L ++ME  G   D   +T L++G
Sbjct: 161 MSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNG 220

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKD 250
           LC +G  + A L L  M K     ++  +N ++D   K+GK+  A  ++  M       +
Sbjct: 221 LCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPN 280

Query: 251 SFTYSSMVHNLCKAKRLPSASKLL 274
            FTY+S+++ LC   RL  A ++ 
Sbjct: 281 IFTYTSLINGLCMEGRLDEARQMF 304



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 3/250 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  ++NGLC     D A +MF  ++  G  P++V Y  LI G CK  +
Sbjct: 272 MIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKK 331

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I  E+   G   N ITYTT+++      K  +  E+   M  +G   +   Y  
Sbjct: 332 VEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNV 391

Query: 121 VIAAFVKIGRLKEATDYMEQMV---TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           ++      G++ +A    E M     DGV  +I +YN L++  C  GKLE A ++  +M+
Sbjct: 392 LLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQ 451

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           K+  +    T+TI+I G+CKAG +K A      +   G   N+  Y  ++  L ++G + 
Sbjct: 452 KRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLML 511

Query: 238 HAINVFESME 247
            A  +F  M+
Sbjct: 512 EAHVLFRKMK 521



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/284 (19%), Positives = 129/284 (45%), Gaps = 4/284 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL   R L    +V     Y  +++    + +   A  +   + +S   P+ I +T ++ 
Sbjct: 20  ALSFSRLLGLSFWVRAFCNYREILRNGLHSLQFNEALDLFSHMVESRPLPSIIDFTRLLN 79

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              + +K+ + + +   ++  G + D +    ++  F +  +   A+ ++ +++  G + 
Sbjct: 80  VIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEP 139

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DI ++ +LIN +C   ++E A  ++++M + G + D   +T +ID LCK G++  A    
Sbjct: 140 DIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLF 199

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M   G   ++  Y  +V+ L   G+   A  +   M  +    D  T+++++    K 
Sbjct: 200 NQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKE 259

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +L  A +L    ++  +        ++++GL   G   EA+++
Sbjct: 260 GKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQM 303



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---GFVPELVTYNILIKGLCK 57
           M+   + P   T+N++L+ LC N   + AL +F  +QK    G  P + TYN+L+ GLC 
Sbjct: 377 MVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCY 436

Query: 58  AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
            G+L  A  +  ++         ITYT I++   +  K K  L +  ++  KG   +   
Sbjct: 437 NGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVT 496

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           Y T+I+   + G + EA     +M  DGV 
Sbjct: 497 YTTMISGLFREGLMLEAHVLFRKMKEDGVS 526


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 150/307 (48%), Gaps = 4/307 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N+++ GLC++   + A    + ++ +G VP+  TY  LI GLCK+ R   A+ +L 
Sbjct: 279 TVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLD 338

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  +   PN + Y  ++    R        +++  M   G   +   Y  ++    K+G
Sbjct: 339 EMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMG 398

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++  A+  ++QMV D  + D ++YN +I  + +    + A+ LL EME  G   + YT++
Sbjct: 399 QMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYS 458

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           I+I GLC++G  + A   LE M   G   N   Y  ++    ++G +  A  +F+ M   
Sbjct: 459 IMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKV 518

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             + D + Y+S++  L K  R+  ++K      + G+   +     ++ G   +G    A
Sbjct: 519 NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 578

Query: 306 KKIQSKI 312
           +++  ++
Sbjct: 579 EQLVQRM 585



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 150/317 (47%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C +L P    +  +++G  +    D A +M + +   G  P  +TY+ L++GLCK G+
Sbjct: 340 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 399

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LK++    H P+ ITY  I++  FR+   K    +LS M+  G + + + Y  
Sbjct: 400 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 459

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G  ++A+D +E+M T G++ +   Y  LI+ YC+EG +  A  + D+M K  
Sbjct: 460 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D Y +  LI GL K G ++ +  +   M + G   N   Y+ ++    K+G ++ A 
Sbjct: 520 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 579

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + M       +   Y  ++ +  K+  +   S    S L  GV +       ++  L
Sbjct: 580 QLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNL 639

Query: 297 RHSGCRREAKKIQSKIR 313
             SG    A ++ S I 
Sbjct: 640 SSSGNMEAAFRVLSGIE 656



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N+++ G  ++    +A R+   ++  G  P + TY+I+I GLC++G    A  +
Sbjct: 417 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 476

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  PNA  Y  ++    R     L  EI   M +     D + Y ++I    K
Sbjct: 477 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 536

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR++E+T Y  QM   G+  +  +Y+ LI+ Y K G LE+A  L+  M   G + +   
Sbjct: 537 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 596

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++   K+ +I+      + M   G   +   Y  ++  L   G ++ A  V   +E
Sbjct: 597 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 656

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D   YSS++  LCK      A  +L    K GV        A++DGL  SG   
Sbjct: 657 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 716

Query: 304 EAKKIQSKI 312
            A+ + + I
Sbjct: 717 YARNVFNSI 725



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 139/286 (48%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P    +  +++G C+      A  +F  + K   +P+L  YN LI GL K GR
Sbjct: 480 MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGR 539

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +     ++ + G  PN  TY+ ++    +N   +   +++  M   G   +   Y  
Sbjct: 540 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID 599

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ ++ K   +++ +   + M+  GV LD   Y  LI+     G +EAA+ +L  +EK G
Sbjct: 600 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNG 659

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + ++ LI GLCK  + + A   L+ M+K G D N+  YN ++D L K G I +A 
Sbjct: 660 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 719

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           NVF S+     V +  TY+S++   CK   + +A  L    L +G+
Sbjct: 720 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 765



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 5/308 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P    +N ++ GL K    + + + F  +Q+ G +P   TY+ LI G  K G L +A
Sbjct: 519 NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 578

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +++ + D+G  PN + Y  +++  F++   +       +M  +G   D   Y  +I  
Sbjct: 579 EQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHN 638

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G ++ A   +  +  +G   D+  Y++LI+  CK    E A+ +LDEM K+G + +
Sbjct: 639 LSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPN 698

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              +  LIDGLCK+G+I  AR     +   G   N   Y  ++D   K G I +A  ++ 
Sbjct: 699 IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYN 758

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       D+F YS +      A  L  A  L+      G   + S    +VDG    G
Sbjct: 759 EMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNN-LVDGFCKRG 817

Query: 301 CRREAKKI 308
             +E  K+
Sbjct: 818 KMQETLKL 825



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 8/274 (2%)

Query: 18  NGLCKNRYTDNALRMFRGLQKH----GFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N L K+    +A+ +   +++     G  P++ TY+ LI+  CK     TA+ +L E+ +
Sbjct: 213 NALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRE 272

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G   N +TY  ++    R+   +        M+  G   DGF Y  +I    K  R  E
Sbjct: 273 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNE 332

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +++M    ++ ++V Y  LI+ + +EG  + A+ ++ EM   G + +K T+  L+ 
Sbjct: 333 AKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVR 392

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
           GLCK G +  A L L+ M +     +   YN I++   +      A  +   ME      
Sbjct: 393 GLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISP 452

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           + +TYS M+H LC++     AS LL      G++
Sbjct: 453 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 486



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 129/274 (47%), Gaps = 4/274 (1%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           ++L+    K+GR++ A  ++  + D G AP+      ++K   R     L  ++   M  
Sbjct: 178 DVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVG 237

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G + D + Y T+I A+ K+     A   + +M   G  L+ V+YN LI   C+ G +E 
Sbjct: 238 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 297

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A+    +ME  G   D +T+  LI+GLCK+     A+  L+ M+      N+  Y  ++D
Sbjct: 298 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 357

Query: 229 RLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
              ++G  D A  + + M       +  TY ++V  LCK  ++  AS LL   ++   R 
Sbjct: 358 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 417

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
                  +++G      +++A ++ S++  A IS
Sbjct: 418 DTITYNLIIEGHFRHHSKKDAFRLLSEMENAGIS 451



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 5/260 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           + I+++ L  +   + A R+  G++K+G VP++  Y+ LI GLCK      A  IL E+ 
Sbjct: 632 YGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMS 691

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN + Y  ++    ++        + +++  KG   +   Y ++I    K+G + 
Sbjct: 692 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 751

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A     +M+  G+  D   Y+ L       G LE A  L++EM  +G      +   L+
Sbjct: 752 NAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLV 810

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
           DG CK G ++     L  +   G   N      I+  L + GK+     +F  ++ K S 
Sbjct: 811 DGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSE 870

Query: 253 T----YSSMVHNLCKAKRLP 268
           +    +SS+  ++    ++P
Sbjct: 871 SAARHFSSLFMDMINQGKIP 890



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 54/294 (18%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    ++ +++GLCK    + A  +   + K G  P +V YN LI GLCK+G +  AR 
Sbjct: 661 VPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARN 720

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   +   G  PN +TYT+++    +         + + M   G T D F Y  +     
Sbjct: 721 VFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCS 780

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G L++A   +E+M   G    I S+N L++ +CK GK++    LL  +  +G   +  
Sbjct: 781 SAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 839

Query: 187 THTILIDGLCKAGNIK----------------GAR----LHLEYMN--KIGFD------- 217
           T   +I GL +AG +                  AR    L ++ +N  KI  D       
Sbjct: 840 TIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIR 899

Query: 218 -----SNLE-------------------AYNCIVDRLGKDGKIDHAINVFESME 247
                 NL+                   +Y  IVD L + GK+  A+N+ + M+
Sbjct: 900 DHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMD 953



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 110/265 (41%), Gaps = 56/265 (21%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++GLCK+     A  +F  +   G VP  VTY  LI G CK G +  A 
Sbjct: 695 VDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAF 754

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY----TFDGF--GYC 119
           ++  E+  +G  P+A  Y+ +   C      +  + ++  M  +G+    +F+    G+C
Sbjct: 755 YLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFC 814

Query: 120 ----------------------------TVIAAFVKIGRLKEA-TDYME----------- 139
                                        +I+   + G+L E  T ++E           
Sbjct: 815 KRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAAR 874

Query: 140 -------QMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
                   M+  G + LD+V  + +I  +CKEG L+ A +L D +  +       ++  +
Sbjct: 875 HFSSLFMDMINQGKIPLDVV--DDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAI 932

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGF 216
           +D LC+ G +  A   L+ M+K G 
Sbjct: 933 VDNLCRKGKLSEALNLLKEMDKRGI 957



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 17/201 (8%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           ++FN +++G CK       L++   +   G VP  +T   +I GL +AG+L     I  E
Sbjct: 804 SSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVE 863

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           L        A  ++++        + K+ L+++  M R         +C       K G 
Sbjct: 864 LQQKTSESAARHFSSLFMDMI--NQGKIPLDVVDDMIRD--------HC-------KEGN 906

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L +A    + +V     +   SY  +++  C++GKL  A  LL EM+K+G    +    I
Sbjct: 907 LDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLI 966

Query: 191 LIDGLCKAGNIKGARLHLEYM 211
           L+  L  +G I+     L+ M
Sbjct: 967 LLTNLHTSGYIQEHNTVLDNM 987


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 138/294 (46%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NG CK      AL +F  L++ G  P ++TYNILI G C+ G L  AR
Sbjct: 366 LLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGAR 425

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ +    P+  TYT +M      R   +       M  KG   D F Y T I+A 
Sbjct: 426 RLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAE 485

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           + IG +  A    E+M+  G+  D V+YN LI+  CK G L+ AY+L  +M   G   D 
Sbjct: 486 LTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDC 545

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI   C+ G +  A+   + M   G   ++  Y   +    + G +  A   F  
Sbjct: 546 VTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRK 605

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M       +  TY+ ++H LC+  R  SA +     L+ G+   K     ++DG
Sbjct: 606 MLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDG 659



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 139/330 (42%), Gaps = 43/330 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++ GL    + + A  +   ++  G VP +VTYN LI GL K G    A+    E+
Sbjct: 302 TYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEM 361

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-- 129
              G  P+ ITY +++    +    K  L +   +KR G       Y  +I  + ++G  
Sbjct: 362 RAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDL 421

Query: 130 ----RLKEATD-----------------------------YMEQMVTDGVQLDIVSYNTL 156
               RLKE                                + ++M++ G++ D  +YNT 
Sbjct: 422 EGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTR 481

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           I+     G +  A+ L +EM  +G   D  T+ +LIDGLCK G++K A +    M   G 
Sbjct: 482 ISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGL 541

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASK 272
             +   Y C++    + G++  A N+F+ M          TY+  +H  C+   L  A  
Sbjct: 542 RLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYG 601

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                L+ GV       +   + L H+ CR
Sbjct: 602 WFRKMLEEGVE----PNEVTYNVLMHALCR 627



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 116/279 (41%), Gaps = 35/279 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+++G C+    + A R+   + +   +P++ TY IL+ G C    L   R
Sbjct: 401 LGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVR 460

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+   G  P+   Y T +             ++   M  +G + D   Y  +I   
Sbjct: 461 IFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGL 520

Query: 126 VKIGRLKEATDYMEQMVTDGVQLD-----------------------------------I 150
            K G LK+A     +MVTDG++LD                                   +
Sbjct: 521 CKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSV 580

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V+Y   I+ YC+ G L  AY    +M ++G E ++ T+ +L+  LC+ G  + A  H   
Sbjct: 581 VTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHE 640

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           M + G   N   Y  ++D   K+G   HAI ++  M  K
Sbjct: 641 MLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQK 679



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD--SGHAPNAITYT 84
           D+   ++  + + G  P + TYN L+   CKAGR+  A  +LK++    +G  PN +TY 
Sbjct: 211 DDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYN 270

Query: 85  TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
            ++    R  + +   +++  M R       F Y  +I   +    +++A   + +M  +
Sbjct: 271 VVINGLARKGELEKAAQLVDIM-RLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENE 329

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G+   +V+YNTLI+   K G  EAA +  DEM  +G   D  T+  LI+G CKAGN+K A
Sbjct: 330 GIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQA 389

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHN 260
                 + + G    +  YN ++D   + G ++ A  + E M  +D      TY+ +++ 
Sbjct: 390 LCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNG 449

Query: 261 LCKAKRL 267
            C  + L
Sbjct: 450 SCMVRNL 456



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 5/248 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +N  ++         NA ++   +   G   + VTYN+LI GLCK G 
Sbjct: 466 MLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGS 525

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L+ A  +  ++   G   + +TYT ++   C R R  +    I   M   G +     Y 
Sbjct: 526 LKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIE-AKNIFDGMVASGLSPSVVTYT 584

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
             I  + + G L  A  +  +M+ +GV+ + V+YN L++  C+ G+ E+AY    EM ++
Sbjct: 585 IFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLER 644

Query: 180 GFECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           G   +KYT+T+LIDG CK GN +   RL+ E M++ G   +   +N +    G +G +  
Sbjct: 645 GLVPNKYTYTLLIDGSCKEGNWVHAIRLYCE-MHQKGIHPDHCTHNALFKGFG-EGHMYD 702

Query: 239 AINVFESM 246
           A+   E++
Sbjct: 703 AVQYLENV 710



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 42/289 (14%)

Query: 30  LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
           L  F+ + +HG  P +   N +++ L  A R    R +  ++   G  P+  TY T++  
Sbjct: 179 LSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLD- 237

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT--DGVQ 147
                                             +F K GR+ +A   ++ M     G  
Sbjct: 238 ----------------------------------SFCKAGRMDQAVALLKDMEARAAGCL 263

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            + V+YN +IN   ++G+LE A  L+D M +   +   +T+  LI GL     ++ A   
Sbjct: 264 PNDVTYNVVINGLARKGELEKAAQLVDIM-RLSKKASAFTYNPLITGLLARDFVEKAGAL 322

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
           L  M   G    +  YN ++D L K G  + A   F+ M  K    D  TY+S+++  CK
Sbjct: 323 LLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCK 382

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           A  L  A  L     ++G+         ++DG    G    A++++ ++
Sbjct: 383 AGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEM 431


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 41/311 (13%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+  +++ LCK    D A  M R +   G  P+ VT++ LI GLCK G    A
Sbjct: 73  DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQA 132

Query: 65  RWILKELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYT---------FD 114
             +L+++   G   +   + TI+ + C +    +L  ++L  +  KG+T          +
Sbjct: 133 FRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVIN 192

Query: 115 G--------------------------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           G                          F +  +I    K  R+ EA   +E+MVT G   
Sbjct: 193 GFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSP 252

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++V+Y+T+IN  CK+G+++ AY L   ME++    +  TH ILIDGLCKA  I+ AR   
Sbjct: 253 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 312

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-----EVKDSFTYSSMVHNLCK 263
             M + G   ++  YN ++D L K  ++D A  +F+++        ++ TYS++ H    
Sbjct: 313 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 372

Query: 264 AKRLPSASKLL 274
             R+  A ++ 
Sbjct: 373 LGRMADACRIF 383



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 159/308 (51%), Gaps = 6/308 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ GLC       AL  FR + K    P+++TY  L+  LCKAG+   A+ +L+E+   G
Sbjct: 50  LMKGLCDAGRVVEALEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARG 108

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV-KIGRLKEA 134
            AP+ +T++T++    +    +    +L  + ++G       + T+I     K   ++ A
Sbjct: 109 CAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELA 168

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
           +  +  ++  G    ++ +N +IN +CK   L++AY LL+ M ++G   + +T TILI G
Sbjct: 169 SKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITG 228

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS--- 251
           LCKA  +  A+  LE M   G   N+  Y+ +++ L K G++D A  +F+ ME ++    
Sbjct: 229 LCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPN 288

Query: 252 -FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
             T++ ++  LCKAKR+  A +L     ++G         +++DGL  S    EA ++  
Sbjct: 289 VVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQ 348

Query: 311 KIRMAKIS 318
            I  + +S
Sbjct: 349 TIPESGVS 356



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 157/355 (44%), Gaps = 43/355 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I    TP    FN+++NG CK +  D+A ++   + + G VP + T+ ILI GLCKA R
Sbjct: 175 VIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANR 234

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L+++   G +PN +TY+T++    +  +     E+   M+R+    +   +  
Sbjct: 235 VGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNI 294

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-- 178
           +I    K  R++EA     +M   G   DI++YN+LI+  CK  +++ A+ L   + +  
Sbjct: 295 LIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG 354

Query: 179 ----------------------------------QGFECDKYTHTILIDGLCKAGNIKGA 204
                                             +GF  D  T+T LI   CK       
Sbjct: 355 VSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEV 414

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
              +E M   GF   +   + ++  L +    + AI +F+SM  +    D+  Y+ +V  
Sbjct: 415 VELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEG 474

Query: 261 LCKAKRLPSASKLLLSCLKSGVRIL---KSAQKAVVDGLRHSGCRREAKKIQSKI 312
           + +A +   A  +L   +    R      SA  A+V+ L   G   +AK++  K+
Sbjct: 475 MARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKM 529



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 125/264 (47%), Gaps = 6/264 (2%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
           +P   TY ILI+G   AG L  A  +L+E+  +G   NA+ +TT+MK      +    LE
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
              AM  K    D   Y  ++ A  K G+  EA   + +M+  G   D V+++TLI+  C
Sbjct: 66  HFRAMA-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLC 124

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC-KAGNIKGARLHLEYMNKIGFDSNL 220
           K G  E A+ +L+++ ++G          +I  LC K  +++ A   L  +   GF   +
Sbjct: 125 KFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTV 184

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
             +N +++   K   +D A  + E M     V + FT++ ++  LCKA R+  A +LL  
Sbjct: 185 LMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK 244

Query: 277 CLKSGVRILKSAQKAVVDGLRHSG 300
            +  G          V++GL   G
Sbjct: 245 MVTGGCSPNVVTYSTVINGLCKQG 268



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 104/217 (47%), Gaps = 3/217 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T + +L GL +  +T+ A+++F  +   G   + + YN++++G+ +A +   A 
Sbjct: 426 FPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKAL 485

Query: 66  WILKEL---GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +L+++    D    P++     +++   +  +     ++L  M  +G+      Y  ++
Sbjct: 486 AVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLL 545

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +   ++ R  EAT   E MV+ G   +I + N +I+  C   K++ AY L+  M K G  
Sbjct: 546 SGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCC 605

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            D  T   LI G CK+G    AR  LE M + G + N
Sbjct: 606 PDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 642



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 117/279 (41%), Gaps = 7/279 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ + +G        +A R+F  L   GF P+L TY  LI   CK  R      +++E+
Sbjct: 362 TYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEM 421

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   T + ++   F     +  +++  +M  +G T D   Y  V+    +  + 
Sbjct: 422 ASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKH 481

Query: 132 KEATDYMEQMVTD---GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
            +A   +EQ++            + + L+   C+ G+ + A  LL +M ++GF     ++
Sbjct: 482 NKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSY 541

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             L+ GL +      A    E M   G    +   N ++  L    K+D A  + + M  
Sbjct: 542 NGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSK 601

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                D  T ++++   CK+ R   A KLL    ++G+ 
Sbjct: 602 LGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLE 640



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 88/182 (48%), Gaps = 3/182 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGL---QKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +N+++ G+ +    + AL +   +   +   F P     + L++ LC+ GR   A+ +L 
Sbjct: 468 YNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLH 527

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++ + G A    +Y  ++    R +++    ++  AM   G   +      VI+      
Sbjct: 528 KMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAA 587

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++ +A + +++M   G   DI + NTLI  YCK G+ + A  LL+EM + G E +  TH 
Sbjct: 588 KVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHD 647

Query: 190 IL 191
           +L
Sbjct: 648 LL 649



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P  +T N++++ LC     D+A  + + + K G  P++ T N LI G CK+GR
Sbjct: 564 MVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGR 623

Query: 61  LRTARWILKELGDSGHAPNAITY 83
              AR +L+E+ ++G  PN  T+
Sbjct: 624 ADLARKLLEEMTEAGLEPNDTTH 646


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M ++  + D 
Sbjct: 287 CRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 347 VGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 137/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V++N L+ G  + G L     +   + 
Sbjct: 139 FNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMH 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   C++G L+ A  L+DEM  +G + DK T+T LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           DG CK G+++ A  H + M +     +   Y  ++  L ++G+   A  V   M      
Sbjct: 319 DGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   + + SKLL    + G
Sbjct: 379 PDTITYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 111/210 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR+  A 
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 261

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I K++     +P+ ITY T++    R    K   +++  M  KG   D   Y T+I   
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGX 321

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L+ A ++ ++M+ + +QLD V Y  LI+  C+EG+   A  +L EM   G + D 
Sbjct: 322 CKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDT 381

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            T+T++I+  CK G++      L+ M + G
Sbjct: 382 ITYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 134/273 (49%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + +AM   G   D + Y  +I    K  ++ +A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 227 ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           C+ G++K AR  ++ M+  G   +   Y  ++D   K+G ++ A       + E++++ D
Sbjct: 287 CRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQL-D 345

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 346 DVGYTALISGLCQEGRYLDAEKVLREMLSVGLK 378



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 13  FNIMLNGLCKN-RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +  +++GLC+  RY D A ++ R +   G  P+ +TY ++I   CK G + T   +LKE+
Sbjct: 349 YTALISGLCQEGRYLD-AEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 72  GDSGHAPNAIT 82
              G  P+ +T
Sbjct: 408 QRDGQMPSVVT 418


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 136/284 (47%), Gaps = 6/284 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++N +LNG  K   +D A   +  +   G +P++VTY+ +I  LCKA  +  
Sbjct: 195 GGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDK 254

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  P+ +TY +I+     + + K  +  L  M+  G   +   Y +++ 
Sbjct: 255 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMN 314

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ DI +Y TL+  Y  +G L   + LLD M + G + 
Sbjct: 315 YLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQP 374

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +   ILI    K   +  A L    M + G + N+  Y  ++D L K G +D A+  F
Sbjct: 375 DHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYF 434

Query: 244 ESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           E M + +  T     Y+S++H LC   +   A +L+L  L  G+
Sbjct: 435 EQM-IDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGI 477



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 154/307 (50%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ ++  LCK +  D A+ +   + K+G +P+ +TYN ++ G C +G+ + A 
Sbjct: 232 ILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 291

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  PN +TY+++M    +N +     +I  +M ++G   D   Y T++  +
Sbjct: 292 GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGY 351

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+Q D   +N LI  Y K+ K++ A L+  +M + G   + 
Sbjct: 352 ATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNV 411

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  +ID LCK+G++  A L+ E M   G   N+  Y  ++  L    K D A  +   
Sbjct: 412 VCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILE 471

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    ++  ++S++ + CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 472 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK 531

Query: 302 RREAKKI 308
             EA K+
Sbjct: 532 MDEATKL 538



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ ++N LCKN  +  A ++F  + K G  P++ TY  L++G    G L    
Sbjct: 302 VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMH 361

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G  P+   +  ++    +  K    + + S M++ G   +   Y TVI   
Sbjct: 362 ALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 421

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + +A  Y EQM+ +G+  +I+ Y +LI+  C   K + A  L+ EM  +G   + 
Sbjct: 422 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNT 481

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
                +ID  CK G +  +    + M +IG   ++  YN ++D     GK+D A  +  S
Sbjct: 482 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS 541

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D  TY ++++  C+  R+  A  L    + SGV         ++ GL H+  
Sbjct: 542 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 601

Query: 302 RREAKKIQSKI 312
              AK++   I
Sbjct: 602 TAAAKELYVSI 612



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 4/267 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++    K    D A+ +F  +++HG  P +V Y  +I  LCK+G 
Sbjct: 367 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGS 426

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G  PN I YT+++       K+    E++  M  +G   +   + +
Sbjct: 427 VDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ DI++YNTLI+  C  GK++ A  LL  M   G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+  LI+G C+   +  A    + M   G   N+  YN I+  L    +   A 
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 241 NVFESMEVKDS----FTYSSMVHNLCK 263
            ++ S+    +     TY+ ++H LCK
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCK 633



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 10/289 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +TP   T+ I++   C+    D        + K GF  + +T+  L+KGLC   R   
Sbjct: 86  GKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSD 145

Query: 64  A-RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM---KRKGYTFDGFGY 118
           A   +L+ + + G  P+  +Y  ++K  C  NR  +  LE+L  M   +  G   D   Y
Sbjct: 146 AMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQE-ALELLHMMADDRGGGSPPDVVSY 204

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            TV+  F K G   +A     +M+  G+  D+V+Y+++I   CK   ++ A  +L+ M K
Sbjct: 205 NTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK 264

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G   D  T+  ++ G C +G  K A   L+ M   G + N+  Y+ +++ L K+G+   
Sbjct: 265 NGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTE 324

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           A  +F+SM  +    D  TY +++        L     LL   +++G++
Sbjct: 325 ARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQ 373



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 106/232 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++G C     D A ++   +   G  P++VTY  LI G C+  R+  A  +
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALAL 573

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+  SG +PN ITY  I++  F  R+     E+  ++ + G   +   Y  ++    K
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 633

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    + +    +QL+  ++N +I    K G+++ A  L       G   D  T
Sbjct: 634 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRT 693

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           ++++ + L + G+++        M + G  ++    N IV +L + G I  A
Sbjct: 694 YSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 37/241 (15%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P   TY  ++ CC R  +  LG   L  + +KG+  D   +  ++       R  +A D 
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 138 MEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
           + + +T+ G   D+ SYN L+   C E + + A  LL  M                    
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD----------------- 192

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSF 252
                +G           G   ++ +YN +++   K+G  D A + +  M     + D  
Sbjct: 193 -----RGG----------GSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV 237

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           TYSS++  LCKA+ +  A ++L + +K+GV        +++ G   SG  +EA     K+
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297

Query: 313 R 313
           R
Sbjct: 298 R 298



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL   T TFNIM+  L K    D A  +F     +G VP++ TY+++ + L + G L   
Sbjct: 651 DLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEEL 710

Query: 65  RWILKELGDSGHAPNAITYTTIMK 88
             +   + ++G + ++    +I++
Sbjct: 711 DDLFLSMEENGCSADSRMLNSIVR 734


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 150/317 (47%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C +L P    +  +++G  +    D A +M + +   G  P  +TY+ L++GLCK G+
Sbjct: 318 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 377

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LK++    H P+ ITY  I++  FR+   K    +LS M+  G + + + Y  
Sbjct: 378 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 437

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G  ++A+D +E+M T G++ +   Y  LI+ YC+EG +  A  + D+M K  
Sbjct: 438 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 497

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D Y +  LI GL K G ++ +  +   M + G   N   Y+ ++    K+G ++ A 
Sbjct: 498 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 557

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + + M       +   Y  ++ +  K+  +   S    S L  GV +       ++  L
Sbjct: 558 QLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNL 617

Query: 297 RHSGCRREAKKIQSKIR 313
             SG    A ++ S I 
Sbjct: 618 SSSGNMEAAFRVLSGIE 634



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 150/307 (48%), Gaps = 4/307 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N+++ GLC++   + A    + ++ +G VP+  TY  LI GLCK+ R   A+ +L 
Sbjct: 257 TVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLD 316

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  +   PN + Y  ++    R        +++  M   G   +   Y  ++    K+G
Sbjct: 317 EMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMG 376

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++  A+  ++QMV D  + D ++YN +I  + +    + A+ LL EME  G   + YT++
Sbjct: 377 QMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYS 436

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           I+I GLC++G  + A   LE M   G   N   Y  ++    ++G +  A  +F+ M   
Sbjct: 437 IMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKV 496

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             + D + Y+S++  L K  R+  ++K      + G+   +     ++ G   +G    A
Sbjct: 497 NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 556

Query: 306 KKIQSKI 312
           +++  ++
Sbjct: 557 EQLVQRM 563



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N+++ G  ++    +A R+   ++  G  P + TY+I+I GLC++G    A  +
Sbjct: 395 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 454

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   G  PNA  Y  ++    R     L  EI   M +     D + Y ++I    K
Sbjct: 455 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 514

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR++E+T Y  QM   G+  +  +Y+ LI+ Y K G LE+A  L+  M   G + +   
Sbjct: 515 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 574

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++   K+ +I+      + M   G   +   Y  ++  L   G ++ A  V   +E
Sbjct: 575 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 634

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D   YSS++  LCK      A  +L    K GV        A++DGL  SG   
Sbjct: 635 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 694

Query: 304 EAKKIQSKI 312
            A+ + + I
Sbjct: 695 YARNVFNSI 703



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 139/286 (48%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P    +  +++G C+      A  +F  + K   +P+L  YN LI GL K GR
Sbjct: 458 MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGR 517

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +     ++ + G  PN  TY+ ++    +N   +   +++  M   G   +   Y  
Sbjct: 518 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID 577

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ ++ K   +++ +   + M+  GV LD   Y  LI+     G +EAA+ +L  +EK G
Sbjct: 578 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNG 637

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D + ++ LI GLCK  + + A   L+ M+K G D N+  YN ++D L K G I +A 
Sbjct: 638 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 697

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           NVF S+     V +  TY+S++   CK   + +A  L    L +G+
Sbjct: 698 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 743



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 5/308 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P    +N ++ GL K    + + + F  +Q+ G +P   TY+ LI G  K G L +A
Sbjct: 497 NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 556

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +++ + D+G  PN + Y  +++  F++   +       +M  +G   D   Y  +I  
Sbjct: 557 EQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHN 616

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G ++ A   +  +  +G   D+  Y++LI+  CK    E A+ +LDEM K+G + +
Sbjct: 617 LSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPN 676

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              +  LIDGLCK+G+I  AR     +   G   N   Y  ++D   K G I +A  ++ 
Sbjct: 677 IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYN 736

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       D+F YS +      A  L  A  L+      G   + S    +VDG    G
Sbjct: 737 EMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNN-LVDGFCKRG 795

Query: 301 CRREAKKI 308
             +E  K+
Sbjct: 796 KMQETLKL 803



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 117/271 (43%), Gaps = 39/271 (14%)

Query: 17  LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76
           L   CK R  D A ++   +++ G     VTYN+LI GLC++G +  A    K++ D G 
Sbjct: 229 LEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 288

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
            P                                   DGF Y  +I    K  R  EA  
Sbjct: 289 VP-----------------------------------DGFTYGALINGLCKSRRSNEAKA 313

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
            +++M    ++ ++V Y  LI+ + +EG  + A+ ++ EM   G + +K T+  L+ GLC
Sbjct: 314 LLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLC 373

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSF 252
           K G +  A L L+ M +     +   YN I++   +      A  +   ME      + +
Sbjct: 374 KMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVY 433

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           TYS M+H LC++     AS LL      G++
Sbjct: 434 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 464



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 5/260 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           + I+++ L  +   + A R+  G++K+G VP++  Y+ LI GLCK      A  IL E+ 
Sbjct: 610 YGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMS 669

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN + Y  ++    ++        + +++  KG   +   Y ++I    K+G + 
Sbjct: 670 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 729

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A     +M+  G+  D   Y+ L       G LE A  L++EM  +G      +   L+
Sbjct: 730 NAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLV 788

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
           DG CK G ++     L  +   G   N      I+  L + GK+     +F  ++ K S 
Sbjct: 789 DGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSE 848

Query: 253 T----YSSMVHNLCKAKRLP 268
           +    +SS+  ++    ++P
Sbjct: 849 SAARHFSSLFMDMINQGKIP 868



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 54/294 (18%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    ++ +++GLCK    + A  +   + K G  P +V YN LI GLCK+G +  AR 
Sbjct: 639 VPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARN 698

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   +   G  PN +TYT+++    +         + + M   G T D F Y  +     
Sbjct: 699 VFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCS 758

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G L++A   +E+M   G    I S+N L++ +CK GK++    LL  +  +G   +  
Sbjct: 759 SAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 817

Query: 187 THTILIDGLCKAGNIK----------------GAR----LHLEYMN--KIGFD------- 217
           T   +I GL +AG +                  AR    L ++ +N  KI  D       
Sbjct: 818 TIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIR 877

Query: 218 -----SNLE-------------------AYNCIVDRLGKDGKIDHAINVFESME 247
                 NL+                   +Y  IVD L + GK+  A+N+ + M+
Sbjct: 878 DHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMD 931



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 4/203 (1%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           + + A+ K+     A   + +M   G  L+ V+YN LI   C+ G +E A+    +ME  
Sbjct: 227 SALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDY 286

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D +T+  LI+GLCK+     A+  L+ M+      N+  Y  ++D   ++G  D A
Sbjct: 287 GLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEA 346

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             + + M       +  TY ++V  LCK  ++  AS LL   ++   R        +++G
Sbjct: 347 FKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEG 406

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
                 +++A ++ S++  A IS
Sbjct: 407 HFRHHSKKDAFRLLSEMENAGIS 429



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 109/262 (41%), Gaps = 56/262 (21%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++GLCK+     A  +F  +   G VP  VTY  LI G CK G +  A ++
Sbjct: 675 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 734

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY----TFDGF--GYC-- 119
             E+  +G  P+A  Y+ +   C      +  + ++  M  +G+    +F+    G+C  
Sbjct: 735 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKR 794

Query: 120 --------------------------TVIAAFVKIGRLKEA-TDYME------------- 139
                                      +I+   + G+L E  T ++E             
Sbjct: 795 GKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHF 854

Query: 140 -----QMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
                 M+  G + LD+V  + +I  +CKEG L+ A +L D +  +       ++  ++D
Sbjct: 855 SSLFMDMINQGKIPLDVV--DDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVD 912

Query: 194 GLCKAGNIKGARLHLEYMNKIG 215
            LC+ G +  A   L+ M+K G
Sbjct: 913 NLCRKGKLSEALNLLKEMDKRG 934



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           + + +  YCK  + + A  +L EM ++G   +  T+ +LI GLC++G ++ A        
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA-------- 276

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASK 272
             GF  ++E Y                        V D FTY ++++ LCK++R   A  
Sbjct: 277 -FGFKKDMEDYGL----------------------VPDGFTYGALINGLCKSRRSNEAKA 313

Query: 273 LL--LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           LL  +SC +    ++  A   ++DG    G   EA K+  ++  A +
Sbjct: 314 LLDEMSCAELKPNVVVYAN--LIDGFMREGNADEAFKMIKEMVAAGV 358


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 156/314 (49%), Gaps = 10/314 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTAR 65
           +P   T NI++NG C+ +  D AL +F  ++K+   VPE  TY  +IK  CK  RL  AR
Sbjct: 67  SPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQAR 126

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYCTVIAA 124
            +L+E   S  + + I  T++ +   + ++     ++L  M ++K    D   +  +I  
Sbjct: 127 QLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHG 184

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF--E 182
           F K GR++EA + +E +V+ G   + V+Y TLI+ +CK G L  A  L   +  +    E
Sbjct: 185 FCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAE 244

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T   LI GLCKA  ++ A   ++ M      ++   Y  ++D L K G+      V
Sbjct: 245 PNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRV 304

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           FE M  +       TY+++VH  CKA  L  A +++ S +  G+    +    +++GL  
Sbjct: 305 FEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFE 364

Query: 299 SGCRREAKKIQSKI 312
           +G  R A +   KI
Sbjct: 365 NGKVRTATEFFEKI 378



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 122/265 (46%), Gaps = 6/265 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N++++G CK      A  M   L   G VP  VTY  LI G CK+G L  A  +
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 68  LKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            K L    H   PN +T+  ++    +  + +   E++  MK +    D F Y T++   
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR  E +   E+M+ +G    +V+Y TL++ +CK G L+ A  ++  M  +G   D 
Sbjct: 293 CKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDV 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T+L++GL + G ++ A    E + +         Y+ +V    K   +D A+  +  
Sbjct: 353 TTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVE 412

Query: 246 M----EVKDSFTYSSMVHNLCKAKR 266
           M       D  T   +V  LCK  R
Sbjct: 413 MLDRRLAPDPATCKLLVEMLCKRGR 437



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 134/261 (51%), Gaps = 7/261 (2%)

Query: 19  GLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           G CK +  D A ++   + +K    P++V +N++I G CKAGR+R A  +L+ L   G  
Sbjct: 148 GFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCV 207

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG--FGYCTVIAAFVKIGRLKEAT 135
           PNA+TYTT++    ++      L++   +  + +  +     +  +I+   K  RL+ A 
Sbjct: 208 PNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAF 267

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + ++QM    ++ D  +Y TL++  CK+G+      + +EM ++G      T+T L+   
Sbjct: 268 ELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAH 327

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----S 251
           CKAG+++ A+  +  M   G   ++  Y  +++ L ++GK+  A   FE +  +     +
Sbjct: 328 CKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCA 387

Query: 252 FTYSSMVHNLCKAKRLPSASK 272
             YS++V   CKA  +  A K
Sbjct: 388 VVYSALVRGCCKAALVDEAVK 408



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 146/317 (46%), Gaps = 48/317 (15%)

Query: 8   PCTATFNIMLNGLCK---------------NRY--------------------TDNALRM 32
           P   TF++++ GLCK                R+                     D A+ +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-GHAPNAITYTTIMKCCF 91
           FRG+Q     P ++T NILI G C+   L  A  +  E+  +    P A TYT I+KC  
Sbjct: 61  FRGIQCS---PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDI 150
           +  +     ++L   +    + D     +V   F K  R+ EA   +  MV     + DI
Sbjct: 118 KMDRLDQARQLLE--ESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDI 175

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V++N +I+ +CK G++  AY +L+ +   G   +  T+T LIDG CK+GN+  A    + 
Sbjct: 176 VAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKV 235

Query: 211 MNKIGF--DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           ++      + N+  +N ++  L K  +++HA  + + M+ +    D+FTY++++  LCK 
Sbjct: 236 LSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQ 295

Query: 265 KRLPSASKLLLSCLKSG 281
            R    S++    L+ G
Sbjct: 296 GRTSEVSRVFEEMLREG 312



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL   T T+  +++GLCK   T    R+F  + + G  P +VTY  L+   CKAG L+ A
Sbjct: 277 DLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDA 336

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +++ +   G  P+  TYT +++  F N K +   E    + R+        Y  ++  
Sbjct: 337 QQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRG 396

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
             K   + EA  Y  +M+   +  D  +   L+ + CK G+ +
Sbjct: 397 CCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 37/82 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+ ++L GL +N     A   F  + +    P  V Y+ L++G CKA  
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAAL 402

Query: 61  LRTARWILKELGDSGHAPNAIT 82
           +  A     E+ D   AP+  T
Sbjct: 403 VDEAVKYYVEMLDRRLAPDPAT 424


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 39/347 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P       ++ GLCK     +A+ ++  L + GF   LVT N LI GLCK G 
Sbjct: 447 MLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGN 506

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +LK++ + G   + ITY T++  C +  K + G ++   M ++G   D F Y  
Sbjct: 507 MQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNL 566

Query: 121 VIAAFVKIGRLKEATDYME-----------------------------------QMVTDG 145
           +I    +IG+L EA +                                      +++T  
Sbjct: 567 LIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN 626

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++L+ V YNTLI  YC+ G    A+ L D+M  +G      T++ LI G+C  G ++ A+
Sbjct: 627 LELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAK 686

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNL 261
             ++ M K G   N+  Y  ++    K G++D  +NV + M   D      TY+ M+   
Sbjct: 687 CLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGY 746

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            K+  + +A+KLL   +  G+         + +G    G   E  KI
Sbjct: 747 SKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKI 793



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 135/271 (49%), Gaps = 4/271 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T+N++++G+C+    D A+ ++   +    VP + TY ++I G CKA +
Sbjct: 552 MVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADK 611

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +  EL       N++ Y T+++   RN       ++   M+ KG       Y +
Sbjct: 612 IEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSS 671

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I     IGR+++A   +++M  +G+  ++V Y  LI  YCK G+++    +L EM    
Sbjct: 672 LIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYD 731

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +K T+T++IDG  K+G++K A   L  M   G   +   YN + +   K+GKI+   
Sbjct: 732 IHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGF 791

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRL 267
            + + M  +    D  TY+++VH   +   L
Sbjct: 792 KICDYMSQEGLPLDEITYTTLVHGWQQPSAL 822



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 9/305 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P    F+  +N  CK    ++A+++F  ++K G  P +VTYN LI GLCK G L  A 
Sbjct: 242 VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAF 301

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +++   G     ITY+ ++    +  K+     +L     KG+T +   Y T+I  +
Sbjct: 302 RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGY 361

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G L +A      MV+ G+  + V+ N++I  +CK G++E A  +L+EM  +GF  + 
Sbjct: 362 CKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINP 421

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T +I  LC     + A   L  M       N      +V  L K+GK   A+ ++  
Sbjct: 422 GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFR 481

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           +  K    +  T ++++H LCK   +  A +LL   L+ G  + K     ++     SGC
Sbjct: 482 LLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI-----SGC 536

Query: 302 RREAK 306
            +E K
Sbjct: 537 CKEGK 541



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 149/352 (42%), Gaps = 76/352 (21%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP    +N +++G CK     +ALR+   +   G  P  VT N +I+G CK G++  A 
Sbjct: 347 FTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAE 406

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK------------------ 107
            IL+E+   G + N   +TTI+     N +++  L  L  M                   
Sbjct: 407 CILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGL 466

Query: 108 -RKGYTFD-----------GFGYCTV-----IAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            ++G   D           GFG   V     I    K G ++EA   +++M+  G  LD 
Sbjct: 467 CKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK 526

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK------------------------- 185
           ++YNTLI+  CKEGK+E  + L  EM KQG E D                          
Sbjct: 527 ITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNE 586

Query: 186 ----------YTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                     YT+ ++IDG CKA  I +G +L  E + +   + N   YN ++    ++G
Sbjct: 587 CKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ-NLELNSVVYNTLIRAYCRNG 645

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
               A  + + M  K     + TYSS++H +C   R+  A  L+    K G+
Sbjct: 646 NTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL 697



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 143/317 (45%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P + T N ++ G CK    + A  +   +   GF      +  +I  LC   R
Sbjct: 377 MVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSR 436

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             +A   L+E+      PN    TT++    +  K+   +E+   +  KG+  +      
Sbjct: 437 FESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA 496

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G ++EA   +++M+  G  LD ++YNTLI+  CKEGK+E  + L  EM KQG
Sbjct: 497 LIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG 556

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D +T+ +LI G+C+ G +  A              N+  Y  ++D   K  KI+   
Sbjct: 557 IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGE 616

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  +  +    +S  Y++++   C+      A KL       G+    +   +++ G+
Sbjct: 617 KLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGM 676

Query: 297 RHSGCRREAKKIQSKIR 313
            + G   +AK +  ++R
Sbjct: 677 CNIGRMEDAKCLIDEMR 693



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           NA+ +FR L   G  P + T   L+  L KA  L  + W+ + +   G +P+   ++T +
Sbjct: 195 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM-RQGVSPDVYLFSTAI 253

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
               +  K +  +++   M++ G + +   Y  +I    K G L EA  + E+MV DGV 
Sbjct: 254 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN 313

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RL 206
             +++Y+ LIN   K  K   A  +L E  ++GF  ++  +  LIDG CK GN+  A R+
Sbjct: 314 ATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRI 373

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
             + ++K G + N    N I+    K G+++ A  + E M  +    +   +++++H LC
Sbjct: 374 RGDMVSK-GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC 432

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
              R  SA + L   L   +R        +V GL   G   +A ++  ++
Sbjct: 433 MNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRL 482


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 9/308 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+     P   T   +++GLCK  +T+ A R+F  L +   + P + TY  +I G CK  
Sbjct: 336 MVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKED 395

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +   + + G  PN  TYTT++    +   +    E+++ M  +G+  + + Y 
Sbjct: 396 KLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYN 455

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            VI +  K  R  EA + + +  + G++ D V+Y  LI   CK+  ++ A      M K 
Sbjct: 456 AVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKT 515

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           GFE D   + ILI   C+   +K +    + +  +G     E Y  ++    K+G  D A
Sbjct: 516 GFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLA 575

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +  F +M+    V DSFTY S++  LCK   +  A KL  + +  G+    S  +     
Sbjct: 576 LKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGL----SPPEVTRVT 631

Query: 296 LRHSGCRR 303
           L +  C+R
Sbjct: 632 LAYEYCKR 639



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 155/313 (49%), Gaps = 5/313 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+L         ML    +    + A+ M   +Q  G  P  +T N +++   ++G +  
Sbjct: 164 GNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDY 223

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +  E+   G  P++ ++  ++  CFR+ K +     LS M ++G+  D      +++
Sbjct: 224 AENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILS 283

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  + G +  A  Y  +M+  G + +++++ +LI+  CK+G ++ A+ +L+EM + G++ 
Sbjct: 284 ALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKP 343

Query: 184 DKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           + YTHT LIDGLCK G  + A RL L+ +    +  N+  Y  ++    K+ K++ A  +
Sbjct: 344 NVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEML 403

Query: 243 FESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F  M+ +  F    TY+++++  CKA     A +L+      G R       AV+D L  
Sbjct: 404 FSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCK 463

Query: 299 SGCRREAKKIQSK 311
                EA ++ +K
Sbjct: 464 KSRAPEAYELLNK 476



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 4/197 (2%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F +IGRL EA   +  M   G+    ++ N ++ +  + G ++ A  + DEM  +G   D
Sbjct: 180 FSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPD 239

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +  +++ G  + G I+ A   L  M + GF  +      I+  L ++G ++ AI  F 
Sbjct: 240 SSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFR 299

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       +   ++S++  LCK   +  A ++L   +++G +       A++DGL   G
Sbjct: 300 KMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRG 359

Query: 301 CRREAKKIQSKIRMAKI 317
              +A ++  K+  + I
Sbjct: 360 WTEKAFRLFLKLVRSDI 376



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 32/220 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ I++   CK      AL  F  + K GF  ++   NILI   C+  +++ +  + + +
Sbjct: 488 TYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 547

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   TYT+++    +   + L L+    MKR G   D F Y ++I+   K   +
Sbjct: 548 VSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMV 607

Query: 132 KEATDYMEQMVTDGV--------------------------------QLDIVSYNTLINL 159
            EA    E M+  G+                                +L I +  TL+  
Sbjct: 608 DEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLEPLDKKLWIRTVRTLVRK 667

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
            C E K+  A L   ++ ++    D+ T         ++G
Sbjct: 668 LCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESG 707



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  M++G CK    D AL+ F  +++HG VP+  TY  LI GLCK   +  A 
Sbjct: 552 LVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEAC 611

Query: 66  WILKELGDSGHAPNAITYTTIM-KCCFRN 93
            + + + D G +P  +T  T+  + C RN
Sbjct: 612 KLYEAMIDRGLSPPEVTRVTLAYEYCKRN 640


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 119/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 154 LRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDAN 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+    
Sbjct: 214 ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGL 273

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG +E A+     M ++    D 
Sbjct: 274 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDD 333

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   N   Y  I++   K G +     + + 
Sbjct: 334 VVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKE 393

Query: 246 ME 247
           M+
Sbjct: 394 MQ 395



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 4/266 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N L+ G  + G L     +   + 
Sbjct: 126 FNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMH 185

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTL    CK+G L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 246 LAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 305

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G+++ A  H + M +     +   Y  ++  L ++G+ +D    + E + V   
Sbjct: 306 DGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLK 365

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            +  TY+ +++  CK   + + SKLL
Sbjct: 366 PNXGTYTMIINEFCKKGDVWTGSKLL 391



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 94  VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWG 153

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + +AM   G   D + Y  +I    K  ++ +A 
Sbjct: 154 LRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDAN 213

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  L  GL
Sbjct: 214 ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGL 273

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G ++ A       + E++ + D
Sbjct: 274 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRL-D 332

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 333 DVVYTALISGLCQEGRSVDAEKMLREMLSVGLK 365



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 92/177 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +      P+L+TYN L  GLCK G 
Sbjct: 219 MLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGD 278

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+ ITYTT++  C +    +   E    M ++    D   Y  
Sbjct: 279 LKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTA 338

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           +I+   + GR  +A   + +M++ G++ +  +Y  +IN +CK+G +     LL EM+
Sbjct: 339 LISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKEMQ 395



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 9/219 (4%)

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           GY    + +  ++  F K G ++ A    + +   G++  +VS+NTL+N Y + G L+  
Sbjct: 118 GYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 177

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           + L + M   G + D YT+++LI+GLCK   +  A    + M   G   N   +  ++D 
Sbjct: 178 FRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 237

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K+G++D A+ +++ M  +    D  TY+++ + LCK   L  A  L+      G++  
Sbjct: 238 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPD 297

Query: 286 KSAQKAVVDGLRHSG-----CRREAKKIQSKIRMAKISH 319
           K     ++DG    G        + + IQ  IR+  + +
Sbjct: 298 KITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVY 336


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 121/241 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN +++G  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D+G  PN +T+TT++    +N +  L +EI   +  +G++ D   Y T+I   
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M    ++ D ++Y TLI+  CKEG LE A+     M K+    D 
Sbjct: 287 CKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKE 406

Query: 246 M 246
           M
Sbjct: 407 M 407



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 136/273 (49%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N L+ G  + G L     +   + 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMH 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+ + M   G   +G  + T+I    K GR+ 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +Q+++ G   D+++YNTLI   CK+G L+ A  L+DEM  +  + DK T+T LI
Sbjct: 259 LAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           DG CK G+++ A  + + M K     +  AY  ++  L ++G+   A  +   M      
Sbjct: 319 DGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   + + SKLL    + G
Sbjct: 379 PDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDG 411



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 113/215 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D A  +F  +  +G VP  VT+  LI G CK GR
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K+L   G +P+ ITY T++    +    K   +++  M  K    D   Y T
Sbjct: 257 VDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L  M   G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            + D  T+T++I+  CK G++K     L+ M + G
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDG 411



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 133/272 (48%), Gaps = 4/272 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++ EA 
Sbjct: 167 LRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +   +M+ +G+  + V++ TLI+ +CK G+++ A  +  ++  QGF  D  T+  LI GL
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G++K AR  ++ M+      +   Y  ++D   K+G ++ A    + M  +    D 
Sbjct: 287 CKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             Y++++  LC+  R   A K+L   L  G++
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLRGMLSVGLK 378



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 141/300 (47%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  FR  ++H F     T   +++ L K    +      KE+ 
Sbjct: 69  FSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+ + G       + T+++ ++++G L 
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E       M   GVQ D+ +Y+ LIN  CKE K++ A  L +EM   G   +  T T LI
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + +   GF  +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M RG+   G  P+  TY ++I   CK G ++T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GH P  +T
Sbjct: 407 MXRDGHVPCVVT 418



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 50/107 (46%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   T+  +++G CK    + A    + + K     + V Y  LI GLC+ GR   A
Sbjct: 306 ELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
             +L+ +   G  P+  TYT I+    +    K G ++L  M R G+
Sbjct: 366 EKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGH 412


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 121/242 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   ++   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N K    +E    M  + +  D   Y T+I   
Sbjct: 227 DLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG L++A+ L + M K+    D 
Sbjct: 287 CKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K   +  A  + + 
Sbjct: 347 VAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 137/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N L+ G  + G L     +   + 
Sbjct: 139 FNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMH 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     ++ + M  KG   +G  + T+I    K G++ 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++     D+++YNTLI   CK+G L+ A  LLDEM  +G + DK T+T LI
Sbjct: 259 SAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           DG CK G++  A    E M K     +  AY  ++  L ++G+   A  +   M      
Sbjct: 319 DGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK + + +A+KLL    + G
Sbjct: 379 PDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQG 411



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 146/302 (48%), Gaps = 10/302 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NIL+   CK G +  A+ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G ++ +AM   G   D + Y  +I    K  ++ EA 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           D   +M+  G+  + V++ TLI+ +CK GK+++A     +M  Q F  D  T+  LI GL
Sbjct: 227 DLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF--- 252
           CK G++K A+  L+ M   G   +   Y  ++D   K+G +D A  + E+M VK+S    
Sbjct: 287 CKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETM-VKESIRLD 345

Query: 253 --TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
              Y++++  LC+  R   A K+L   L  G++        +++      C++E  K  +
Sbjct: 346 DVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEF----CKKEDVKTAA 401

Query: 311 KI 312
           K+
Sbjct: 402 KL 403



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 109/210 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+++++NGLCK    + A  +F  +   G VP  VT+  LI G CK G++ +A 
Sbjct: 202 VQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAM 261

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              K++      P+ ITY T++    +    K   ++L  M+ KG   D   Y T+I   
Sbjct: 262 ETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGN 321

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L  A +  E MV + ++LD V+Y  LI+  C+EG+   A  +L EM   G + D 
Sbjct: 322 CKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDN 381

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            T+T++I+  CK  ++K A   L+ M + G
Sbjct: 382 GTYTMIINEFCKKEDVKTAAKLLKEMQRQG 411



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 140/300 (46%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++N   ++ +  +A+  FR  ++H       T   +++ L K    +      KE+ 
Sbjct: 69  FSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  +  +   +  ++ + G       + T++  ++++G L 
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +       M   GVQ D+ +Y+ LIN  CKE K+  A  L +EM  +G   +  T T LI
Sbjct: 189 QGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M    F  +L  YN ++  L K G +  A ++ + M +K   
Sbjct: 249 DGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L SA +L  + +K  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKM 368



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK    D+A  +   + K     + V Y  LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAE 366

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
            +L+E+   G  P+  TYT I+    +    K   ++L  M+R+G+
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGH 412



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++GLC+     +A +M R +   G  P+  TY ++I   CK   ++TA  +LKE+ 
Sbjct: 349 YTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQ 408

Query: 73  DSGHAPNAIT 82
             GH P  +T
Sbjct: 409 RQGHVPCVVT 418


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 141/273 (51%), Gaps = 10/273 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++I+++GLCK    D A  +F+ ++  G +P++++Y  LI G C++G+ + A+++
Sbjct: 637 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 696

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ D G  P+  T++ ++    +  K     E+L  M ++G   +   Y T++     
Sbjct: 697 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 756

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------GF 181
             R+ EAT    +M   G   D+V+Y TL+   C+ G ++ A  L  +M          F
Sbjct: 757 NDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNF 816

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           + D  +++I+IDGLCK G    AR   + M  +G   N+ +Y  ++    + GK++ A +
Sbjct: 817 KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKH 876

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           +F  M  +    ++ TYS M+H  CK  ++  A
Sbjct: 877 LFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 153/309 (49%), Gaps = 16/309 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGL----QKHGF--VPELVTYNILIKGLCKAGRL 61
           P   T   ++ GLC++     AL + + +      +G    P  ++Y+I+I GLCK GR 
Sbjct: 596 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 655

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             AR + KE+   G  P+ I+YT+++    R+ K+K    + + M   G   D   +  +
Sbjct: 656 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 715

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    K G++ EA + +E M+  G   + V+Y TL+   C   ++  A  L  +M+K G 
Sbjct: 716 IDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGC 775

Query: 182 ECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIG-----FDSNLEAYNCIVDRLGKDGK 235
             D  T+  L+ GLC+ GNIK A  LH + ++  G     F  ++ +Y+ I+D L K G+
Sbjct: 776 LPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGR 835

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
            D A  +F+ M+    + +  +Y+S++H  C++ +L  A  L    +  GV++       
Sbjct: 836 EDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSV 895

Query: 292 VVDGLRHSG 300
           ++ G    G
Sbjct: 896 MIHGFCKEG 904



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 154/314 (49%), Gaps = 19/314 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI---------LIKGLC 56
           L P + TFNI++N LC  +  +  L    G+ + G++P++VTY+I         LI  LC
Sbjct: 6   LFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILC 65

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           K G++  A  +L+ +   G   + +TY+T++K      +      +  +M++ G   D  
Sbjct: 66  KEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAI 125

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL--DIVSYNTLINLYCKEGKLEAAY 170
            Y T++    + G +  A    ++M+ D    G++    ++SY+ +I+  CK+ + + A 
Sbjct: 126 TYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEAR 185

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            L  EM+ QG   D  ++T LI G C +G  + A+     M  +G   ++     ++D  
Sbjct: 186 ELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMF 245

Query: 231 GKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            K+GK+  A  + E M     + D  TYS+++  LC   R+  A++L +S  K G R   
Sbjct: 246 CKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDA 305

Query: 287 SAQKAVVDGLRHSG 300
            A   ++ GL  +G
Sbjct: 306 IAYGTLMKGLCQTG 319



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 137/277 (49%), Gaps = 11/277 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++I+++GLCK+R  D A  +F+ ++  G +P++++Y  LI G C +G+   A+ +
Sbjct: 163 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCL 222

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ D G  P+  T   ++    +  K     E+L  M  +G   D   Y T+I     
Sbjct: 223 FNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCM 282

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM----EKQGFEC 183
             R+ EAT     M   G + D ++Y TL+   C+ GK+  A  L  EM     + G +C
Sbjct: 283 KHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKC 342

Query: 184 ---DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T ++LID LCK G +  A   LE M + G   ++  Y+ ++  L  + +I  A 
Sbjct: 343 IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEAT 402

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKL 273
            +F SM+      D+ TY +++  LC+   +  A +L
Sbjct: 403 WLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQL 439



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 151/320 (47%), Gaps = 20/320 (6%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+  CT     ++ GLC       A ++F  +QK G +P +VT   L+KGLC++G ++ A
Sbjct: 562 DVVTCTT----LVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIA 617

Query: 65  RWILKE-LGDSGH-----APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
             + K  L D+        PNAI+Y+ I+    +  +     E+   MK  G   D   Y
Sbjct: 618 LELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISY 677

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            ++I  F + G+ K+A     +MV  GVQ D+ +++ LI++ CKEGK+  A  LL+ M +
Sbjct: 678 TSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQ 737

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   +  T+T L+ GLC    I  A      M K+G   ++  Y  ++  L + G I  
Sbjct: 738 RGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKT 797

Query: 239 AINVFESMEV----------KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
           A+ + + M             D  +YS ++  LCK  R   A +L       GV     +
Sbjct: 798 ALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVIS 857

Query: 289 QKAVVDGLRHSGCRREAKKI 308
             +++ G   SG   +AK +
Sbjct: 858 YTSLIHGFCRSGKLEDAKHL 877



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 153/324 (47%), Gaps = 16/324 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T +++++ LCK      A ++   + + G + ++VT   L+KGLC   R+  A 
Sbjct: 524 IQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKAT 583

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF------DGFGYC 119
            +  ++   G  PN +T  T+MK   ++   K+ LE+   M      +      +   Y 
Sbjct: 584 QLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYS 643

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    K GR  EA +  ++M   GV  D++SY +LI+ +C+ GK + A  L +EM   
Sbjct: 644 IIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDI 703

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D  T ++LID LCK G +  A   LE M + G   N   Y  +V  L  + +I  A
Sbjct: 704 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 763

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSA----SKLLLSCLKSGVRILKS--AQ 289
             +F  M+    + D  TY +++  LC+   + +A     K+L    + G        + 
Sbjct: 764 TQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISY 823

Query: 290 KAVVDGLRHSGCRREAKKIQSKIR 313
             ++DGL   G   EA+++  +++
Sbjct: 824 SIIIDGLCKHGREDEARELFKEMK 847



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 154/317 (48%), Gaps = 16/317 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALR----MFRGLQKHGFV--PELVTYNILIKGLCKAGRL 61
           P   T+  ++ GLC+    + AL+    M     ++G    P L++Y+I+I GLCK  R 
Sbjct: 415 PDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRE 474

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             AR + +E+   G  P+ I+YTT++     + K++    + + M   G   D      +
Sbjct: 475 DEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVL 534

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    K G++ EA   +E ++  G  LD+V+  TL+   C + ++  A  L  +M+K G 
Sbjct: 535 IDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGC 594

Query: 182 ECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNK-----IGFDSNLEAYNCIVDRLGKDGK 235
             +  T   L+ GLC++GNIK A  LH   ++      I    N  +Y+ I+D L K G+
Sbjct: 595 MPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGR 654

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
            D A  +F+ M+    + D  +Y+S++H  C++ +   A  L    +  GV+   +    
Sbjct: 655 EDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSV 714

Query: 292 VVDGLRHSGCRREAKKI 308
           ++D L   G   EA ++
Sbjct: 715 LIDMLCKEGKVIEANEL 731



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 162/351 (46%), Gaps = 47/351 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG------------- 54
           P   +++I+++GLCK+R  D A  +F  ++  G +P++++Y  LI G             
Sbjct: 456 PTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 515

Query: 55  ----------------------LCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCF 91
                                 LCK G++  A  +L+ +   G   + +T TT++K  C 
Sbjct: 516 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCM 575

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI- 150
           ++R  K   ++   M++ G   +     T++    + G +K A +  + M++D     I 
Sbjct: 576 KHRISK-ATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGIN 634

Query: 151 -----VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                +SY+ +I+  CK G+ + A  L  EM+  G   D  ++T LI G C++G  K A+
Sbjct: 635 CKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAK 694

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                M  IG   ++  ++ ++D L K+GK+  A  + E M     + ++ TY+++V  L
Sbjct: 695 YLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGL 754

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           C   R+  A++L +   K G          ++ GL  +G  + A ++  K+
Sbjct: 755 CMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKM 805



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 8/176 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+  ++ GLC N     A ++F  +QK G +P++VTY  L+KGLC+ G ++TA  +
Sbjct: 742 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALEL 801

Query: 68  LKE-LGDSGH-----APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
            K+ L D+G       P+ I+Y+ I+    ++ +     E+   MK  G   +   Y ++
Sbjct: 802 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 861

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           I  F + G+L++A     +MV  GVQL+ V+Y+ +I+ +CKEG+++ A  L  +ME
Sbjct: 862 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKME 915



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 19/254 (7%)

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT---------VIAA 124
           +G  P++ T+  ++ C    ++   GL  ++ + R+GY  D   Y           +I  
Sbjct: 4   AGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDI 63

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G++ EA + +E M+  G  LDIV+Y+TLI   C E ++  A  L   M+K G   D
Sbjct: 64  LCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPD 123

Query: 185 KYTHTILIDGLCKAGNIKGA-RLHLEYMNKIG-----FDSNLEAYNCIVDRLGKDGKIDH 238
             T+  L+ GLC+ GNI  A +LH E +N  G         L +Y+ I+D L KD + D 
Sbjct: 124 AITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDE 183

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A  +F+ M+ +    D  +Y+S++H  C + +   A  L    L  G++   +    ++D
Sbjct: 184 ARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLID 243

Query: 295 GLRHSGCRREAKKI 308
                G   EA ++
Sbjct: 244 MFCKEGKVIEANEL 257


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 156/314 (49%), Gaps = 10/314 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTAR 65
           +P   T NI++NG C+ +  D AL +F  ++K+   VPE  TY  +IK  CK  RL  AR
Sbjct: 67  SPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQAR 126

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYCTVIAA 124
            +L+E   S  + + I  T++ +   + ++     ++L  M ++K    D   +  +I  
Sbjct: 127 QLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHG 184

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF--E 182
           F K GR++EA + +E +V+ G   + V+Y TLI+ +CK G L  A  L   +  +    E
Sbjct: 185 FCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAE 244

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T   LI GLCKA  ++ A   ++ M      ++   Y  ++D L K G+      V
Sbjct: 245 PNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRV 304

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           FE M  +       TY+++VH  CKA  L  A +++ S +  G+    +    +++GL  
Sbjct: 305 FEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFE 364

Query: 299 SGCRREAKKIQSKI 312
           +G  R A +   KI
Sbjct: 365 NGKVRTATEFFEKI 378



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 122/265 (46%), Gaps = 6/265 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N++++G CK      A  M   L   G VP  VTY  LI G CK+G L  A  +
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 68  LKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            K L    H   PN +T+  ++    +  + +   E++  MK +    D F Y T++   
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR  E +   E+M+ +G    +V+Y TL++ +CK G L+ A  ++  M  +G   D 
Sbjct: 293 CKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDV 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T+L++GL + G ++ A    E + +         Y+ +V    K   +D A+  +  
Sbjct: 353 TTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVE 412

Query: 246 M----EVKDSFTYSSMVHNLCKAKR 266
           M       D  T   +V  LCK  R
Sbjct: 413 MLDRRLAPDPATCKLLVEMLCKRGR 437



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 134/261 (51%), Gaps = 7/261 (2%)

Query: 19  GLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           G CK +  D A ++   + +K    P++V +N++I G CKAGR+R A  +L+ L   G  
Sbjct: 148 GFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCV 207

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG--FGYCTVIAAFVKIGRLKEAT 135
           PNA+TYTT++    ++      L++   +  + +  +     +  +I+   K  RL+ A 
Sbjct: 208 PNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAF 267

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           + ++QM    ++ D  +Y TL++  CK+G+      + +EM ++G      T+T L+   
Sbjct: 268 ELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAH 327

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----S 251
           CKAG+++ A+  +  M   G   ++  Y  +++ L ++GK+  A   FE +  +     +
Sbjct: 328 CKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCA 387

Query: 252 FTYSSMVHNLCKAKRLPSASK 272
             YS++V   CKA  +  A K
Sbjct: 388 VVYSALVRGCCKAALVDEAVK 408



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 146/317 (46%), Gaps = 48/317 (15%)

Query: 8   PCTATFNIMLNGLCK---------------NRY--------------------TDNALRM 32
           P   TF++++ GLCK                R+                     D A+ +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-GHAPNAITYTTIMKCCF 91
           FRG+Q     P ++T NILI G C+   L  A  +  E+  +    P A TYT I+KC  
Sbjct: 61  FRGIQCS---PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDI 150
           +  +     ++L   +    + D     +V   F K  R+ EA   +  MV     + DI
Sbjct: 118 KMDRLDQARQLLE--ESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDI 175

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V++N +I+ +CK G++  AY +L+ +   G   +  T+T LIDG CK+GN+  A    + 
Sbjct: 176 VAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKV 235

Query: 211 MNKIGF--DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           ++      + N+  +N ++  L K  +++HA  + + M+ +    D+FTY++++  LCK 
Sbjct: 236 LSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQ 295

Query: 265 KRLPSASKLLLSCLKSG 281
            R    S++    L+ G
Sbjct: 296 GRTSEVSRVFEEMLREG 312



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL   T T+  +++GLCK   T    R+F  + + G  P +VTY  L+   CKAG L+ A
Sbjct: 277 DLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDA 336

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +++ +   G  P+  TYT +++  F N K +   E    + R+        Y  ++  
Sbjct: 337 QQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRG 396

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
             K   + EA  Y  +M+   +  D  +   L+ + CK G+ +
Sbjct: 397 CCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 37/82 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+ ++L GL +N     A   F  + +    P  V Y+ L++G CKA  
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAAL 402

Query: 61  LRTARWILKELGDSGHAPNAIT 82
           +  A     E+ D   AP+  T
Sbjct: 403 VDEAVKYYVEMLDRRLAPDPAT 424


>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
 gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
          Length = 647

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYT--DNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           M      P TAT+N+++   C +     D+A+R+FR + K    P+  +YN +I GLC+ 
Sbjct: 263 MRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGLCRR 318

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           GRL  AR +  E+  +G AP  +TYTT++    R   +   L++   M R+G   +   Y
Sbjct: 319 GRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTY 378

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            ++I    K GR   A + +++MV +    + ++Y+++I+  CKEG L  A  +LD M  
Sbjct: 379 SSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRL 438

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY-------NCIVDRLG 231
           QG + D      LI GLC AG    A  +L+ MN  G   N   +       + +V  L 
Sbjct: 439 QGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALC 498

Query: 232 KDGKIDHAINVFESMEVKDSFTYSSMVHNLCK 263
             G++  A  V++SM  +   T  +  H L +
Sbjct: 499 SKGEVVRAFQVYQSMRTRGISTKPTTFHLLVE 530



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 10/217 (4%)

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
           SA    G       Y  V+AA V    L  A   +  M   G      +YN L+  +C +
Sbjct: 226 SAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSD 285

Query: 164 G--KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
               ++ A  +   + K     D  ++  +IDGLC+ G +  AR     M   G    + 
Sbjct: 286 AAVPIDDAVRVFRNIPKP----DACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVV 341

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            Y  ++  L ++   D A+ +F+ M     + +  TYSS++  LCK  R  SA +LL   
Sbjct: 342 TYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRM 401

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           +K           +V+DGL   GC  +A +I  ++R+
Sbjct: 402 VKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRL 438



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 3/160 (1%)

Query: 152 SYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            + +L+  Y +  + L A +L        G      ++T ++  L    ++  AR  L  
Sbjct: 203 PFLSLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLAD 262

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDG--KIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLP 268
           M   GF      YN +V     D    ID A+ VF ++   D+ +Y++++  LC+  RLP
Sbjct: 263 MRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCRRGRLP 322

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            A  L    + +G          ++  L    C  +A K+
Sbjct: 323 EARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKL 362


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 155/311 (49%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T++ ++  LCK +  D A+ +   + K+G +P  +TYN ++ G C + + + A 
Sbjct: 227 ISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAI 286

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     +I  +M ++G   D   YCT++  +
Sbjct: 287 GFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGY 346

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  D   +N LI  Y K+ K++ A L+  +M + G   + 
Sbjct: 347 ATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNV 406

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G++  A L+ E M   G   N+  Y  ++  L    K D A  +   
Sbjct: 407 VTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILE 466

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    ++  ++S++H+ CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 467 MLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK 526

Query: 302 RREAKKIQSKI 312
             EA K+ S +
Sbjct: 527 MDEATKLLSSM 537



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 11/313 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++  ++NG  K   +D A   +  +      P++VTY+ +I  LCK   +  
Sbjct: 190 GGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDK 249

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  PN +TY +I+     + + K  +  L  M+  G   D   Y +++ 
Sbjct: 250 AMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMD 309

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ DI +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 310 YLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +   ILI    K   +  A L    M + G + N+  Y  ++  L K G +D A+  F
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 244 ESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           E M + +  T     Y+S++H+LC   +   A +L+L  L  G+ +         + + H
Sbjct: 430 EQM-IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL----NTIFFNSIIH 484

Query: 299 SGCRREAKKIQSK 311
           S C +E + I+S+
Sbjct: 485 SHC-KEGRVIESE 496



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++    K    D A+ +F  +++HG  P +VTY  +I  LCK+G 
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G  PN I YT+++       K+    E++  M  +G   +   + +
Sbjct: 422 VDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ ++++Y+TLI+ YC  GK++ A  LL  M   G
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG 541

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D  T+  LI+G C+   +  A    + M   G   N+  YN I+  L    +   A 
Sbjct: 542 MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 601

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + +S    +  TY+ ++H LCK      A ++  +   + +++       ++  L
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 661

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 662 LKVGRNDEAKDL 673



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 147/344 (42%), Gaps = 41/344 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +L+G C +     A+   + ++  G  P++VTYN L+  LCK GR
Sbjct: 257 MVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 316

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-------------------------------- 88
              AR I   +   G  P+  TY T+++                                
Sbjct: 317 STEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNI 376

Query: 89  --CCF-RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
             C + +  K    + + S M++ G   +   Y  VI    K G + +A  Y EQM+ +G
Sbjct: 377 LICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEG 436

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  +I+ Y +LI+  C   K + A  L+ EM  +G   +      +I   CK G +  + 
Sbjct: 437 LTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESE 496

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
              + M +IG   N+  Y+ ++D     GK+D A  +  SM       D  TY+++++  
Sbjct: 497 KLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGY 556

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           C+  R+  A  L    + SGV         ++ GL H+  RR A
Sbjct: 557 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT--RRTA 598



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 132/288 (45%), Gaps = 10/288 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +TP   T+ I++   C+    D        + K GF  E +T+  L+KGLC   R   
Sbjct: 81  GKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSD 140

Query: 64  A-RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM---KRKGYTFDGFGY 118
           A   +L+ + +    P+  + T ++K  C  NR  +  LE+L  M   +  G   D   Y
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQE-ALELLHMMADDRGGGSAPDVVSY 199

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            TVI  F K G   +A     +M+   +  D+V+Y+++I   CK   ++ A  +L  M K
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVK 259

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G   +  T+  ++ G C +   K A   L+ M   G + ++  YN ++D L K+G+   
Sbjct: 260 NGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTE 319

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           A  +F+SM  +    D  TY +++        L     LL   +++G+
Sbjct: 320 ARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI 367



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 104/232 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G C     D A ++   +   G  P+ VTYN LI G C+  R+  A  +
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALAL 568

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+  SG +PN ITY  I++  F  R+     E+   + + G   +   Y  ++    K
Sbjct: 569 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCK 628

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    + +    +QL+  ++N +I    K G+ + A  L   +   G   D  T
Sbjct: 629 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRT 688

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           ++++ + L + G ++        M + G  +N    N IV +L + G I  A
Sbjct: 689 YSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 740



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 43/258 (16%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +++  CK      + ++F  + + G  P ++TY+ LI G C AG++  A  +L 
Sbjct: 476 TIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLS 535

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+ +TY T++                             GYC       ++ 
Sbjct: 536 SMFSVGMKPDCVTYNTLIN----------------------------GYC-------RVS 560

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+ +A    ++MV+ GV  +I++YN ++       +  AA  L   + K G + +  T+ 
Sbjct: 561 RMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYN 620

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE--AYNCIVDRLGKDGKIDHAINVFESME 247
           I++ GLCK  N+    L + + N    D  LE   +N ++  L K G+ D A ++F ++ 
Sbjct: 621 IILHGLCK-NNLTDEALRM-FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 678

Query: 248 ----VKDSFTYSSMVHNL 261
               V D  TYS M  NL
Sbjct: 679 ANGLVPDVRTYSLMAENL 696



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P   TY  ++ CC R  +  LG   L  + +KG+  +   +  ++       R  +A D 
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 138 MEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFECDKYTHTILID 193
           + + +T+     D+ S   L+   C E + + A  LL  M      G   D  ++T +I+
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVIN 204

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT 253
           G  K G+                D     Y+ ++DR     +I             D  T
Sbjct: 205 GFFKEGD---------------SDKAYSTYHEMLDR-----RIS-----------PDVVT 233

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           YSS++  LCK + +  A ++L + +K+GV        +++ G   S   +EA     K+R
Sbjct: 234 YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMR 293



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL   T TFNIM+  L K    D A  +F  L  +G VP++ TY+++ + L + G L   
Sbjct: 646 DLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEEL 705

Query: 65  RWILKELGDSGHAPNAITYTTIMK 88
             +   + ++G   N+    +I++
Sbjct: 706 DDLFLSMEENGCTANSRMLNSIVR 729


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 134/284 (47%), Gaps = 8/284 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQ----KHGFVPELVTYNILIKGLCKAGRLR 62
           TP   ++NI+L GLC    +  AL +   +     + G  P++V+Y  +I GL + G+L 
Sbjct: 164 TPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLD 223

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +  E+ D G +PN ITY  ++     + K K  + I   M R G   D   Y T++
Sbjct: 224 KAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLM 283

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K GR  EA    + MV  G + D   Y TL++ Y  EG L   + LLD M + G +
Sbjct: 284 VYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQ 343

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D Y   ILI    K G +  A L    M + G   N+  Y  ++D L + GK+D A++ 
Sbjct: 344 PDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQ 403

Query: 243 FESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           F+ +       +   + +++H LC   +   A +L +  +  G+
Sbjct: 404 FDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGI 447



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P ++ +  +L+G     Y     ++   + ++G  P+   +NILI    K G +  A   
Sbjct: 309 PDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLA 368

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G  PN +TY T+M    R  K    +     +  +G T +G  + T+I     
Sbjct: 369 FSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCA 428

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +  +A +   +M+  G+  + + +NTL+N  CKEG +  A  + D M +   +CD  T
Sbjct: 429 CDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVIT 488

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LIDG C  G +  A   LE M   G   N   YN I++   K+G+I+ A ++F  M 
Sbjct: 489 YTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMA 548

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K        YS+++H L + +R+ +A +L L  +K G+++       ++ GL  + C  
Sbjct: 549 SKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTD 608

Query: 304 EAKKI 308
           +A ++
Sbjct: 609 DALRM 613



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 152/301 (50%), Gaps = 8/301 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+N +L+G C +     A+ +FR + + G  P++VTYN L+  LCK GR
Sbjct: 232 MLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGR 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL-EILSAMKRKGYTFDGFGYC 119
              AR +   +   GH P++  Y T++   +    Y + + ++L  M R G   D + + 
Sbjct: 292 SMEARKVFDSMVKKGHKPDSSIYGTLLH-GYATEGYLVQMHQLLDVMVRNGTQPDHYIFN 350

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I A+ K G + EA     +M   G+  +IV+Y T+++  C+ GK++ A    D +  +
Sbjct: 351 ILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISE 410

Query: 180 GFECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           G   +      LI GLC      K   L +E + + G   N   +N +++ L K+G +  
Sbjct: 411 GLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGR-GICPNTIFFNTLLNHLCKEGMVTR 469

Query: 239 AINVFESM---EVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A N+F+ M   +V+ D  TY++++   C   ++  A+KLL   +  GV+  +     +++
Sbjct: 470 AKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIIN 529

Query: 295 G 295
           G
Sbjct: 530 G 530



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 130/281 (46%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++ LC+    D+A+  F  L   G  P  V +  LI GLC   +   A 
Sbjct: 377 LHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAE 436

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN I + T++    +         I   M R     D   Y T+I  +
Sbjct: 437 ELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGY 496

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G++ EAT  +E MV DGV+ + V+YNT+IN YCK G++E A  L  +M  +G     
Sbjct: 497 CLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGI 556

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             ++ ++ GL +   I  A+    +M K G    +  YN I+  L ++   D A+ +F +
Sbjct: 557 VIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHN 616

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + + D    + T++ M+  L K  R   A  L  S L  G+
Sbjct: 617 LCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGL 657



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 136/294 (46%), Gaps = 13/294 (4%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL +F  + +     +L TY+I+I    +AG L  A   L  +  +G    AIT++ ++K
Sbjct: 84  ALSLFNRMPR----ADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLK 139

Query: 89  CCFRNRKYKLGLEI-LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD--- 144
               +++    ++I L  M   G T + F Y  ++       R ++A   +  M+ D   
Sbjct: 140 GLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTR 199

Query: 145 -GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            G   D+VSY T+IN   +EG+L+ AY L DEM  QG   +  T+  L+ G C +G  K 
Sbjct: 200 GGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKE 259

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVH 259
           A      M + G + ++  YN ++  L K+G+   A  VF+SM  K    DS  Y +++H
Sbjct: 260 AIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLH 319

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
                  L    +LL   +++G +        ++      G   EA    SK+R
Sbjct: 320 GYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMR 373



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 46/330 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI-LKE 70
           T++I++    +  + D A      + + G+  + +T++ L+KGLC   R   A  I L+ 
Sbjct: 98  TYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRR 157

Query: 71  LGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM----KRKGYTFDGFGYCTVIAAF 125
           +   G  PNA +Y  ++K  C  NR  +  L +L  M     R G   D   Y TVI   
Sbjct: 158 MPALGCTPNAFSYNILLKGLCDENRSQQ-ALHLLHTMMADDTRGGCPPDVVSYTTVINGL 216

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++ G+L +A    ++M+  G+  + ++YN L++ YC  GK + A  +  +M + G E D 
Sbjct: 217 LREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDV 276

Query: 186 YTHTILIDGLCKAG---------------------NIKGARLH--------------LEY 210
            T+  L+  LCK G                     +I G  LH              L+ 
Sbjct: 277 VTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDV 336

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M + G   +   +N ++    K G +D A+  F  M  +    +  TY +++  LC+  +
Sbjct: 337 MVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGK 396

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +  A       +  G+       + ++ GL
Sbjct: 397 VDDAMSQFDRLISEGLTPNGVVFRTLIHGL 426



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 36/265 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++G C +   D A ++  G+   G  P  VTYN +I G CK GR+  A  + +++
Sbjct: 488 TYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQM 547

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-------YTFDGFGYCT---- 120
              G  P  + Y+TI+   F+ R+     E+   M + G       Y     G C     
Sbjct: 548 ASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCT 607

Query: 121 ------------------------VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
                                   +I A +K GR  EA D    ++  G+  ++V+Y  +
Sbjct: 608 DDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLM 667

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           +    ++G LE    L   +EK G   D      L+  L + G ++ A ++L  +++  F
Sbjct: 668 MKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSKIDENNF 727

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAIN 241
                    +V  L   GK D  IN
Sbjct: 728 SLEASTAESLV-FLVSSGKYDQHIN 751



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 1/157 (0%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P   T+NI+L GLC+N  TD+ALRMF  L    F  +  T+NI+I  L K GR  
Sbjct: 585 CGIKLP-IGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHD 643

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A+ +   L   G  PN +TY  +MK        +   ++  ++++ G T D      ++
Sbjct: 644 EAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALV 703

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
               + G +++A  Y+ ++  +   L+  +  +L+ L
Sbjct: 704 GKLPQKGEVRKAGVYLSKIDENNFSLEASTAESLVFL 740


>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 369

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 145/299 (48%), Gaps = 4/299 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           I+++ LCKNR    AL + + ++  G  P +VTY+ LI GLCK+GRL  A   L E+   
Sbjct: 53  ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 112

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
              PN IT++ ++    +  K      +   M +     + F Y ++I       R+ EA
Sbjct: 113 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 172

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              ++ M++ G   ++V+Y+TL N + K  +++    LLD+M ++G   +  +   LI G
Sbjct: 173 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 232

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----D 250
             +AG I  A     YM   G   N+ +YN ++  L  +G+++ A++ FE M+      D
Sbjct: 233 YFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLD 292

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
             TY+ M+H +CKA  +  A  L        V     A   ++  L  +G R EA  + 
Sbjct: 293 IITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADALN 351



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 6/264 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T++ ++ GLCK+    +A R    +      P ++T++ LI    K G+L    
Sbjct: 79  ISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVD 138

Query: 66  WILKELGDSGHAPNAITYTT-IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            + K +      PN  TY++ I   C  NR  +  +++L  M  KG T +   Y T+   
Sbjct: 139 SVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDE-AIKMLDLMISKGCTPNVVTYSTLANG 197

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K  R+ +    ++ M   GV  + VS NTLI  Y + GK++ A  +   M   G   +
Sbjct: 198 FFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPN 257

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++ I++ GL   G ++ A    E+M K   D ++  Y  ++  + K   +  A ++F 
Sbjct: 258 IRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFY 317

Query: 245 SMEVK----DSFTYSSMVHNLCKA 264
            ++ K    D   Y+ M+  L +A
Sbjct: 318 KLKFKRVEPDFKAYTIMIAELNRA 341



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 103/212 (48%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + K G  P++VT + L+ G C +  ++ A ++  ++   G   + +  T ++    +NR 
Sbjct: 4   MMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRL 63

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
               LE+L  MK +G + +   Y ++I    K GRL +A   + +M +  +  ++++++ 
Sbjct: 64  VVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSA 123

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+ Y K GKL     +   M +   + + +T++ LI GLC    +  A   L+ M   G
Sbjct: 124 LIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKG 183

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              N+  Y+ + +   K  ++D  I + + M 
Sbjct: 184 CTPNVVTYSTLANGFFKSSRVDDGIKLLDDMP 215



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 96/199 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T++ ++ GLC +   D A++M   +   G  P +VTY+ L  G  K+ R
Sbjct: 144 MIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSR 203

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L ++   G A N ++  T++K  F+  K  L L +   M   G   +   Y  
Sbjct: 204 VDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 263

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+A     G +++A    E M      LDI++Y  +I+  CK   ++ AY L  +++ + 
Sbjct: 264 VLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKR 323

Query: 181 FECDKYTHTILIDGLCKAG 199
            E D   +TI+I  L +AG
Sbjct: 324 VEPDFKAYTIMIAELNRAG 342



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 39/176 (22%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID---- 193
           M +M+  G++ DIV+ ++L+N +C    ++ A  +  +MEK G + D    TILID    
Sbjct: 1   MLKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCK 60

Query: 194 -------------------------------GLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
                                          GLCK+G +  A   L  M+    + N+  
Sbjct: 61  NRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVIT 120

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++ ++D   K GK+    +V++ M       + FTYSS+++ LC   R+  A K+L
Sbjct: 121 FSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKML 176


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   ++N ++ G C+      A  +F  L+     P +VTYN L+ GLC+ G 
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ +  E+ + G AP+ +TYT ++    +     +  E    M  +G   D + Y T
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 484

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I   +K+G    A    E+M+  G   D++ YN +++  CK G LE A  LL +M   G
Sbjct: 485 RIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D  T+T +I    + G + KG  +  E ++K G   ++  Y  ++      G+++ A
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSK-GLTPSVVTYTVLIHGHAGKGRLERA 603

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              F  M+ K    +  TY+S+++ LCK +R+  A       ++ G+
Sbjct: 604 FIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI 650



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 142/286 (49%), Gaps = 12/286 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L+GLC+    + A ++   +   G  P++VTY IL+ G CK G L  A+
Sbjct: 405 LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQ 464

Query: 66  WILKELGDSGHAPNAITYTT----IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
               E+   G   ++  Y T     +K    +R + L  E+L+    KG+  D   Y  V
Sbjct: 465 EFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLA----KGFPPDLIIYNVV 520

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           +    K+G L+EA++ +++MV+DGV  D V+Y ++I+ + + G+L     +  EM  +G 
Sbjct: 521 VDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGL 580

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
                T+T+LI G    G ++ A ++   M + G   N+  YN +++ L K  ++D A N
Sbjct: 581 TPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYN 640

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            F  M  K    + ++Y+ +++  C       A  L    L  GV+
Sbjct: 641 FFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQ 686



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           T  A  +   +   GF P+L+ YN+++ GLCK G L  A  +L+++   G  P+ +TYT+
Sbjct: 495 TSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTS 554

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           I+     N + + G EI   M  KG T     Y  +I      GRL+ A  Y  +M   G
Sbjct: 555 IIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKG 614

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  ++++YN+LIN  CK  +++ AY    EM ++G   +KY++TILI+  C  GN + A 
Sbjct: 615 ILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEAL 674

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
              + M   G   +   ++ ++ +LGKD K+  A+   ES+
Sbjct: 675 SLYKQMLDRGVQPDSCTHSALLKQLGKDCKL-QAVRQLESL 714



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 138/316 (43%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L+P     N +L  L        A+ ++R + + G  P +VTYN L+   CK G+
Sbjct: 190 MIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++    +L E+   G APN +TY  ++    +  +++    ++  M + G     + Y  
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +   G L EA    E+MV  G    + +YN+ I   CK G++  A   L +M    
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 369

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
              D  ++  LI G C+ GN+  A L  + +  I     +  YN ++D L + G+++ A 
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 429

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + +       D  TY+ +V+  CK   L  A +     L  G+ +   A    + G 
Sbjct: 430 QLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGE 489

Query: 297 RHSGCRREAKKIQSKI 312
              G    A  +Q ++
Sbjct: 490 LKLGDTSRAFSLQEEM 505



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 122/265 (46%), Gaps = 4/265 (1%)

Query: 22  KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81
           K    +  L +F  + K    P++   N +++ L     +  A  + + +G+ G  P  +
Sbjct: 176 KKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIV 235

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           TY T++    +  K + GL++LS M+R+G   +   Y  +I    K G  ++A   + +M
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEM 295

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
           +  G+++   +YN LI  Y  +G L  A  L +EM  +G      T+   I GLCK G +
Sbjct: 296 LKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRM 355

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSM 257
             A   L  M       ++ +YN ++    + G +  A  +F+ +     F    TY+++
Sbjct: 356 SDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTL 415

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGV 282
           +  LC+   L  A +L +  +  G+
Sbjct: 416 LDGLCRQGELEVAQQLKVEMINEGI 440



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  +++   +N        +F  +   G  P +VTY +LI G    GR
Sbjct: 540 MVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGR 599

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A     E+ + G  PN ITY +++    + R+        + M  KG   + + Y  
Sbjct: 600 LERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTI 659

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           +I     +G  +EA    +QM+  GVQ D  +++ L+    K+ KL+A 
Sbjct: 660 LINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAV 708



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 98/236 (41%), Gaps = 26/236 (11%)

Query: 29  ALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           ALR+FR  +   GF      +  +++ L +   +R+A W+++ + ++    + I    I 
Sbjct: 98  ALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANM--HRIVDVLIG 155

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
            C       K+ L++L                  I  + K   +++     ++M+   + 
Sbjct: 156 GCVSSEVSVKI-LDLL------------------IWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D+ + N ++ +   +  +  A  +   M + G +    T+  L+D  CK G ++     
Sbjct: 197 PDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDL 256

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVH 259
           L  M + G   N   YN +++ L K G+ + A  +   M        ++TY+ +++
Sbjct: 257 LSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIY 312


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 155/333 (46%), Gaps = 45/333 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N ++N L +NR    A  +   + ++G    +VTYN +IKG C  G  + A  +
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   GH+ N +TY TI+K    +      L IL  M+  G   D + Y  +I  F K
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 677

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--------- 178
           I +++ A     +MV DG+  + V+Y  LI+ YCK+ KL+ A  LL+ M++         
Sbjct: 678 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 737

Query: 179 --------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                                     +G   +  T+T +IDGLCK G+     L LE  N
Sbjct: 738 YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTS---LALEMFN 794

Query: 213 KI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
           K+   G   NL  Y+ ++  LG++GK++ A N+F  +E    + D  TY  M+     + 
Sbjct: 795 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 854

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           ++  A   L   +K+G +        ++ GL++
Sbjct: 855 KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 887



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 147/316 (46%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T    +  LC     ++A R+F  ++  G  P + TY  LI GLC +G 
Sbjct: 481 MILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGL 540

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +   +   G  PN +TY  ++     NR+ K    +L+ M R G   +   Y  
Sbjct: 541 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNE 600

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +  +G  K+A   M  M+  G   ++V+YNT+I  YC  G   +A  +LD M   G
Sbjct: 601 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 660

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D++++T LI G CK   ++ A      M   G   N   Y  ++D   KD K+D A 
Sbjct: 661 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 720

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ E M+      +  TY+ ++H L K      A +L    ++ G+        A++DGL
Sbjct: 721 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 780

Query: 297 RHSGCRREAKKIQSKI 312
             +G    A ++ +K+
Sbjct: 781 CKNGSTSLALEMFNKM 796



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 151/322 (46%), Gaps = 20/322 (6%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P T T+  M+ G C+    D+AL++F  + K G  P  VTY+ LI GLC +GR+  A
Sbjct: 415 EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 474

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +++E+   G  P A T T  +        Y+    +   MK KG   + + Y  +I+ 
Sbjct: 475 FDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 534

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G LK A     +M  DGV  + V+YN LIN+  +  +++ A+++L+ M + G   +
Sbjct: 535 LCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTN 594

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  +I G C  G+ K A L +  M + G  +NL  YN I+      G    A+ + +
Sbjct: 595 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 654

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG----- 295
            M       D ++Y+ ++   CK  ++ SA  L    +  G+   +    A++DG     
Sbjct: 655 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 714

Query: 296 -----------LRHSGCRREAK 306
                      ++ SGCR   +
Sbjct: 715 KLDTATSLLEHMKRSGCRPNVQ 736



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 121/254 (47%), Gaps = 4/254 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +L  L +   T   +  +  +   G  P L+ YN +I  LCK G +  A  I+K++ 
Sbjct: 353 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 412

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +S  +P+  TYT+++    R       L++ + M ++G   +   Y T+I      GR+ 
Sbjct: 413 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 472

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D + +M+  G+     +    I   C  G  E A+ L  +M+ +G E + YT+T LI
Sbjct: 473 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 532

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
            GLC +G +K A      M++ G   N   YN +++ L ++ +I +A  V   M     F
Sbjct: 533 SGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLF 592

Query: 253 ----TYSSMVHNLC 262
               TY+ M+   C
Sbjct: 593 TNIVTYNEMIKGYC 606



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 11/284 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+  +++G CK+   D A  +   +++ G  P + TYN+LI GL K   
Sbjct: 691 MVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNN 750

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K + + G  PN +TYT ++    +N    L LE+ + M  +G   +   Y +
Sbjct: 751 FSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSS 810

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  + G+++EA +   ++   G+  D ++Y  +I  Y   GK+E A+  L  M K G
Sbjct: 811 LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG 870

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHL--EYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            +   +T+ +LI GL     +   RL    + +    F       + +     K  ++D 
Sbjct: 871 CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 930

Query: 239 AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            ++V    +V++     ++V NL  A R   A++LL S +  G+
Sbjct: 931 GLSV----QVQN-----ALVSNLSTAGRWFEANELLGSMISQGL 965



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 9/306 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++  ++ G CK    ++A  +F  +   G  P  VTY  LI G CK  +L T
Sbjct: 659 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 718

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+ +  SG  PN  TY  ++    +   +    E+   M  +G   +   Y  +I 
Sbjct: 719 ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 778

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G    A +   +M+  G   ++++Y++LI    +EGK+E A  L  E+E+ G   
Sbjct: 779 GLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 838

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI-DHAINV 242
           D+ T+  +I+    +G ++ A   L  M K G    L  Y  ++  L  +  + D  +  
Sbjct: 839 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 898

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
              +    SF Y +   +   A  + SA    L+ L  G+ +    Q A+V  L  +G  
Sbjct: 899 LPDVVPNCSFGYQTTDQD---AVSVMSAK---LAELDPGLSV--QVQNALVSNLSTAGRW 950

Query: 303 REAKKI 308
            EA ++
Sbjct: 951 FEANEL 956



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 59/308 (19%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI   + P   T+  M++GLCKN  T  AL MF  + + G +P L+TY+ LI+ L + G+
Sbjct: 761  MIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGK 820

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFD- 114
            +  A  +  EL   G  P+ ITY  +++    + K +     L  M + G     +T+  
Sbjct: 821  VEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGV 880

Query: 115  --------------------------GFGYCT---------------------------V 121
                                       FGY T                           +
Sbjct: 881  LIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNAL 940

Query: 122  IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
            ++     GR  EA + +  M++ G+  D  +YN+L+    +   ++ A  +   M  QG 
Sbjct: 941  VSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 1000

Query: 182  ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            E     +  LI  LC+    K AR+  E M    ++ +      ++D L +DG  D  + 
Sbjct: 1001 EVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCME 1060

Query: 242  VFESMEVK 249
                ME +
Sbjct: 1061 FLHIMETR 1068



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 76/161 (47%)

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++K C         +  L  + + G     F Y  ++    ++G      D   +M+++G
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 380

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           VQ +++ YN +IN  CK+G +  A  ++ ++ +     D +T+T +I G C+  ++  A 
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 440

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
                M K G + N   Y+ +++ L   G+++ A ++   M
Sbjct: 441 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 481


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 152/295 (51%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T+N+++ G C+      A ++   + ++  +P + TYN+L+ G C  G++  A 
Sbjct: 279 LSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAF 338

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+      P+ +TY T++  C + R       ++  M +KG   +   Y  ++   
Sbjct: 339 RIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWM 398

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + EAT  +++M  +G+  D V+YNTLI  YCK GK+  A+ ++DEM  +G + D 
Sbjct: 399 CKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDT 458

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T   ++  LC    +  A   L   +K G+  +  +Y  ++    KD K D A+N+++ 
Sbjct: 459 WTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDE 518

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M+    +  + TY+S++  LC+++++  A   L   L++G+   ++    ++ G 
Sbjct: 519 MKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGF 573



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 147/314 (46%), Gaps = 40/314 (12%)

Query: 9   CTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           C A T+NI+L  +CK      A      ++++G  P+ VTYN LI   CKAG++  A  +
Sbjct: 386 CNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRM 445

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G   +  T  TI+ C    +K      +L +  ++GY  D   Y  +I  + K
Sbjct: 446 MDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFK 505

Query: 128 -----------------------------IG------RLKEATDYMEQMVTDGVQLDIVS 152
                                        IG      ++ +A D + +M+ +G+  D  +
Sbjct: 506 DEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETT 565

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN +I+ +C EG +E A+   +EM +  F+ D YT  IL+ GLC+ G ++ A      + 
Sbjct: 566 YNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLV 625

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
             G D ++  YN I+  L K+GK ++A ++   ME K    D +TY  ++  L  A R+ 
Sbjct: 626 SKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIK 685

Query: 269 SASKLLLSCLKSGV 282
            A +  L  ++SG+
Sbjct: 686 EAEEFTLKMVESGI 699



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 140/280 (50%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T +FNI++ G C      +AL     + + G VP+ V+YN ++  L K   L+ AR
Sbjct: 209 VVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEAR 268

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G +PN  TY  ++    R    K   +++  M R       + Y  ++  F
Sbjct: 269 DLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGF 328

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G++ EA    ++M    V  D+V+YNTLI+   +       Y L++EM+K+G +C+ 
Sbjct: 329 CNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNA 388

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ I++  +CK GN+  A   L+ M + G   +   YN ++    K GK+  A  + + 
Sbjct: 389 VTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDE 448

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           M  K    D++T ++++H LC  K+L  A  LL S  K G
Sbjct: 449 MTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRG 488



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 10/269 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +L P   T+N+++NG C +   D A R+   ++K   +P++VTYN LI G C   R
Sbjct: 309 MTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDG-CSQWR 367

Query: 61  LRTARW-ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
             +  + +++E+   G   NA+TY  I+K   +          L  M+  G + D   Y 
Sbjct: 368 DSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYN 427

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I A+ K G++ +A   M++M + G+++D  + NT+++  C E KL+ AY LL    K+
Sbjct: 428 TLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKR 487

Query: 180 GFECDKYTHTILIDGLCKAGNIKGAR-LHL-EYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           G+  D+ ++ ILI G  K  + KG R L+L + M +     +   YN ++  L +  K+D
Sbjct: 488 GYILDEVSYGILILGYFK--DEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVD 545

Query: 238 HAIN----VFESMEVKDSFTYSSMVHNLC 262
            AI+    + E+  V D  TY+ ++H  C
Sbjct: 546 QAIDKLNEMLENGLVPDETTYNIIIHGFC 574



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 139/288 (48%), Gaps = 12/288 (4%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++ I++ G  K+   D AL ++  +++   +P  +TYN +I GLC++ ++  A   L E
Sbjct: 494 VSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNE 553

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + ++G  P+  TY  I+         +   +  + M    +  D +    ++    + G 
Sbjct: 554 MLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGM 613

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L++A      +V+ G  +D+V+YNT+I+  CKEGK E AY LL EME +    D+YT+ +
Sbjct: 614 LEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKV 673

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGF--DSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           +I  L  AG IK A      M + G   D NL        +LGK G+      V E  + 
Sbjct: 674 IIAALTDAGRIKEAEEFTLKMVESGIVHDQNL--------KLGK-GQNVLTSEVSEHFDF 724

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           K S  YS  ++ LC   +   A  L +   K GV + K     +++GL
Sbjct: 725 K-SIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGL 771



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 23/220 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+NI+++G C     + A +    + ++ F P++ T NIL++GLC+ G 
Sbjct: 554 MLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGM 613

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +   L   G   + +TY TI+    +  K++   ++L+ M+ K    D + Y  
Sbjct: 614 LEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKV 673

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLD-----------------------IVSYNTLI 157
           +IAA    GR+KEA ++  +MV  G+  D                        ++Y+  I
Sbjct: 674 IIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQI 733

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           N  C + K + A  L  E+ K+G   +KYT+  L++GL K
Sbjct: 734 NELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGLIK 773



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 7/201 (3%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN---LYCKEGKLEAAYLLLDEM 176
           T I A+V++ +   AT    +M     + ++++ NTL+N    Y     +  A  +L + 
Sbjct: 145 TSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDS 204

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            K G   +  +  ILI G C    +K A   +  M++ G   +  +YN I+D L K   +
Sbjct: 205 IKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLL 264

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A ++   M+ K    +  TY+ +V   C+   L  A+K++    ++ +         +
Sbjct: 265 QEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNML 324

Query: 293 VDGLRHSGCRREAKKIQSKIR 313
           V+G  + G   EA +I+ ++ 
Sbjct: 325 VNGFCNDGKIDEAFRIRDEME 345


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 141/308 (45%), Gaps = 26/308 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   ++NI+++GLC+N    +A R+   +  +G  P+ VTY  L+ G C  G+
Sbjct: 354 MVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGK 413

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ IL E+   G  PN  T  T++   ++  +     E+L  M  K Y  D      
Sbjct: 414 VFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNI 473

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQ----------------------LDIVSYNTLIN 158
           V+    + G L++A++ + +M TDG                         D+++Y TLIN
Sbjct: 474 VVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLIN 533

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
             CK GKLE A     EM  +    D  T+   +   CK G I  A   L+ M + G   
Sbjct: 534 GLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSK 593

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            L+ YN ++  LG  G+I     + + M  +    D  TY++M++ LC+  +   A+ LL
Sbjct: 594 TLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLL 653

Query: 275 LSCLKSGV 282
              L  GV
Sbjct: 654 HEMLDKGV 661



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 30/297 (10%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV----PELVTYNILIKGLCKAGRL 61
           L P   TFN  ++ LC+      A R+FR +Q  G +    P +VT+N+++KG C+ G +
Sbjct: 250 LLPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMM 309

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             AR +++ +   G+  +  +Y T +    RN K   G  +L  M   G   + + Y  V
Sbjct: 310 EEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIV 369

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           +    +   + +A   M+ MV++GV  D V+Y TL++ YC +GK+  A  +L+EM ++G 
Sbjct: 370 MDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGC 429

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             + YT   L++ L K G    A   L+ MN+  +  +    N +V+ L ++G+++ A  
Sbjct: 430 HPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASE 489

Query: 242 VFESM--------------------------EVKDSFTYSSMVHNLCKAKRLPSASK 272
           V   M                           V D  TY+++++ LCK  +L  A K
Sbjct: 490 VVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKK 546



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 154/334 (46%), Gaps = 30/334 (8%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGF----------------------VPELVT 47
           T T NI++NGLC+N   + A  +   +   G                       VP+++T
Sbjct: 468 TVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVIT 527

Query: 48  YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
           Y  LI GLCK G+L  A+    E+      P+++TY T +    +  K    L +L  M+
Sbjct: 528 YTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDME 587

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
           R G +     Y ++I      G++ E    M++M   G+  DI +YN +IN  C+ GK +
Sbjct: 588 RNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTK 647

Query: 168 AAYLLLDEMEKQGF-ECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNC 225
            A  LL EM  +G    +  +  ILI   CK+G+ K A  L    ++  G    L  Y+ 
Sbjct: 648 DATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEAL--YSL 705

Query: 226 IVDRLGKDGKIDHAINVFE-SME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           + + L   GK+  A  +FE S+E   +  +F Y  ++  LCK  RL  A  LL   +  G
Sbjct: 706 MFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKG 765

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
                S+   V+DGL   G +++A ++   + +A
Sbjct: 766 YCFDHSSFIPVIDGLSKRGNKQQADELGRIMELA 799



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 155/320 (48%), Gaps = 10/320 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P T TFN+++  LC++   D+A  +F  + + G  P   T  IL++G C+AGR
Sbjct: 142 MIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGR 201

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A   +   G  G   N + Y T++    +        +++  M  KG   D   + +
Sbjct: 202 TKQALEFVD--GKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNS 259

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDG----VQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            I+A  + G++ EA+     M  DG     + ++V++N ++  +C+EG +E A  L++ M
Sbjct: 260 RISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETM 319

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           +K G      ++   + GL + G +   R  L+ M + G + N+ +YN ++D L ++  +
Sbjct: 320 KKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMM 379

Query: 237 DHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
             A  + + M       D+ TY++++H  C   ++  A  +L   ++ G          +
Sbjct: 380 LDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTL 439

Query: 293 VDGLRHSGCRREAKKIQSKI 312
           ++ L   G + EA+++  K+
Sbjct: 440 LNSLWKEGRKSEAEEMLQKM 459



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 143/289 (49%), Gaps = 10/289 (3%)

Query: 32  MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
           ++  + + G  PE  T+N+LI+ LC++  L  AR +  ++ + G  PN  T   +++   
Sbjct: 138 LYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFC 197

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           R  + K  LE +    + G   +   Y T++++F K     EA   +E+M   G+  D+V
Sbjct: 198 RAGRTKQALEFVDG--KMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVV 255

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQG----FECDKYTHTILIDGLCKAGNIKGARLH 207
           ++N+ I+  C+ GK+  A  +  +M+  G     + +  T  +++ G C+ G ++ AR  
Sbjct: 256 TFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSL 315

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           +E M K G   +LE+YN  +  L ++GK+    +V + M       + ++Y+ ++  LC+
Sbjct: 316 VETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCR 375

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
              +  A +L+   + +GV         ++ G    G   EAK I +++
Sbjct: 376 NHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEM 424



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R    T     M+  GV  +  ++N LI   C+   L+ A  L D+M ++G + +K+T  
Sbjct: 131 RPHYVTSLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVG 190

Query: 190 ILIDGLCKAGNIKGARLHLEYMN-KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           IL+ G C+AG  K A   LE+++ K+G + N   YN +V    K    D A  + E M  
Sbjct: 191 ILVRGFCRAGRTKQA---LEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTE 247

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLL 274
           K    D  T++S +  LC+A ++  AS++ 
Sbjct: 248 KGLLPDVVTFNSRISALCRAGKVFEASRIF 277



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 39/199 (19%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARW 66
           P   T+N M+N LC+   T +A  +   +   G V P + ++ ILIK  CK+G  + A  
Sbjct: 628 PDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVA-- 685

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL-EILSAMKRKGYTFDGFGYCTVIAAF 125
              EL D            +  C  +   Y L   E+L+                     
Sbjct: 686 --CELFD----------VALSVCGHKEALYSLMFNELLAG-------------------- 713

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+L +A +  E  +   +      Y  LI+  CK+G+L+ A+ LL ++  +G+  D 
Sbjct: 714 ---GKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKGYCFDH 770

Query: 186 YTHTILIDGLCKAGNIKGA 204
            +   +IDGL K GN + A
Sbjct: 771 SSFIPVIDGLSKRGNKQQA 789


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 147/307 (47%), Gaps = 7/307 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP   TF  ++NG CK    D+ALR+   +       +L  Y +LI  L K  RL+ A+
Sbjct: 384 FTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAK 443

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L E+  +G APN + YT+I+    +       LE+   M+ +G   + + Y ++I   
Sbjct: 444 ETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGL 503

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++  +L +A   + +M  DG+   +++Y TLI   CK+ + + A+ L + MEK G   D+
Sbjct: 504 IQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDE 563

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             + +L D LCK+G  + A     ++ + G       Y  +VD   K G  D A  + E 
Sbjct: 564 QAYNVLTDALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 620

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D +TYS ++  LCK K+L  A  +L     SGV+    A   ++  +   G 
Sbjct: 621 MVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680

Query: 302 RREAKKI 308
              AK +
Sbjct: 681 HDHAKSL 687



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 145/304 (47%), Gaps = 7/304 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P    +  +++G CK      AL +F+ ++  G  P   TY  LI GL +  +
Sbjct: 449 MFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKK 508

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++ ++ + G  P  I YTT+++   +  ++     +   M++ G T D   Y  
Sbjct: 509 LHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNV 568

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +  A  K GR +EA  +   +V  GV L  V+Y +L++ + K G  + A +L+++M  +G
Sbjct: 569 LTDALCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 625

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D YT+++L+  LCK   +  A   L+ M   G   N+ AY  I+  + K+GK DHA 
Sbjct: 626 CKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAK 685

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M        + TY+  + + CK  ++  A  L+    + GV          ++G 
Sbjct: 686 SLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGC 745

Query: 297 RHSG 300
            H G
Sbjct: 746 GHMG 749



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 133/321 (41%), Gaps = 52/321 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP    +  ++ G CK    DNA R+F  ++K+G  P+   YN+L   LCK+GR   A 
Sbjct: 524 ITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAY 583

Query: 66  WIL--------------------------------KELGDSGHAPNAITYTTIMKCCFRN 93
             L                                +++ + G   +  TY+ +++   + 
Sbjct: 584 SFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQ 643

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           +K    L IL  M   G   +   Y  +I+  +K G+   A     +M++ G +    +Y
Sbjct: 644 KKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTY 703

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
              I+ YCK G++E A  L+ EME+ G   D  T+ I I+G    G +  A   L+ M  
Sbjct: 704 TVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVD 763

Query: 214 IGFDSNLEAYNCIVDRLGKDGKID-HAIN---VFESMEVKDSF----------------T 253
              + N   Y  ++    K   I+ H I+   ++  +E+   +                T
Sbjct: 764 ASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVT 823

Query: 254 YSSMVHNLCKAKRLPSASKLL 274
           YSS++   CKA RL  A  LL
Sbjct: 824 YSSIIAGFCKATRLEEACVLL 844



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 142/327 (43%), Gaps = 21/327 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+N M+   CK      A R F  L++ G   +  T N L+ G C+   LR A 
Sbjct: 175 LLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKAC 234

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+L  +   G   N  +YT +++  +  R  +  L ++  M + G + +   Y  +I   
Sbjct: 235 WLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGL 294

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ +A   +++M   GV   + +YN +I+ YCK G+++ A  +   ME+ G   D 
Sbjct: 295 CKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDD 354

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LI GLC  G +  A   L      GF   +  +  +++   K  +ID A+ V  +
Sbjct: 355 WTYNSLIYGLC-GGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSN 413

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG------ 295
           M       D   Y  +++ L K  RL  A + L     +G+        +++DG      
Sbjct: 414 MISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGM 473

Query: 296 ----------LRHSGCRREAKKIQSKI 312
                     + H GC   A    S I
Sbjct: 474 VGAALEVFKLMEHEGCHPNAWTYGSLI 500



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 5/299 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N+ L  L +   T+   +++  L + G +P+ VTYN +I   CK G L  A      L 
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLR 206

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +SG   +  T   ++    R    +    +L  M   G   + + Y  +I    +   ++
Sbjct: 207 ESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVR 266

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +  MV DG  L++  Y  LI   CKEG++  A  LLDEM  +G     +T+  +I
Sbjct: 267 EALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMI 326

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK+G +K A      M + G + +   YN ++  L   GK+D A  +      +   
Sbjct: 327 DGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARGFT 385

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
               T++++++  CKA+R+  A ++  + + S  ++   A   +++ L      +EAK+
Sbjct: 386 PTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKE 444



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 131/303 (43%), Gaps = 23/303 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+ + ++  CK    + A  +   +++ G  P++VTY+I I G    G 
Sbjct: 691 MISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGY 750

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   LK + D+   PN  TY  ++       K+ L + +++A     +  D  G   
Sbjct: 751 MDRAFSTLKRMVDASCEPNCWTYWLLL-------KHFLKMSLINA-----HYIDTSGMWN 798

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I        L      +E+M+  G+   +V+Y+++I  +CK  +LE A +LLD M  + 
Sbjct: 799 WI-------ELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKA 851

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++  +T+LI   C           +  M + GF   LE+Y+ ++  L  +G  D A 
Sbjct: 852 ISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAK 911

Query: 241 NVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  +   D       +  +   L KA  +   S+LL +      RI   +   + D +
Sbjct: 912 SLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSI 971

Query: 297 RHS 299
           R +
Sbjct: 972 REA 974


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 119/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N K  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A + + +M   G++ D ++Y TLI+  CK+G LE A+     M ++    D 
Sbjct: 287 CKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 141/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      +  +F  ++K G  P +V++N L+ G  + G L     +   + 
Sbjct: 139 FNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMH 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K G++ 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A  L++EM  +G + DK T+T LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G+++ A  + + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 319 DGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            DS TY+ +++  CK   + + SKLL    + G
Sbjct: 379 PDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 112/215 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D A  +F  +   G VP  VT+  LI G CK G+
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGK 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K    +++ M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L+ A +Y ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            + D  T+T++I+  CK G++      L+ M + G
Sbjct: 377 LKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 130/272 (47%), Gaps = 4/272 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NIL+   CK G +R ++ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++ EA 
Sbjct: 167 LRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +   +M+  G+  + V++ TLI+ +CK GK++ A  +  +M  Q    D  T+  LI GL
Sbjct: 227 ELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G++K AR  +  M+  G   +   Y  ++D   KDG ++ A    + M  +    D 
Sbjct: 287 CKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDD 346

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             Y++++  LC+  R   A K+L   L  G++
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 137/300 (45%), Gaps = 4/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      KE+ 
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+  +   +  +M    +  + +L   +  A+++ G       + T++  +++ G L 
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLD 188

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +       M   GVQ D+ +Y+ LIN  CKE K++ A  L  EM  +G   +  T T LI
Sbjct: 189 KGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLI 248

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DG CK G +  A    + M       +L  YN ++  L K G +  A N+   M +K   
Sbjct: 249 DGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLK 308

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++   CK   L +A +     ++  +R+   A  A++ GL   G   +A+K+
Sbjct: 309 PDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKM 368



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  P+  TY ++I   CK G + T   +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GH P+ +T
Sbjct: 407 MQRDGHVPSVVT 418



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK+   + A    + + +     + V Y  LI GLC+ GR   A 
Sbjct: 307 LKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
            +L+E+   G  P++ TYT I+    +      G ++L  M+R G+
Sbjct: 367 KMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 412


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 1   MICGDLTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           M+C    PC +  FN +++G C +     A+ +F G++K GFVP++ +Y+IL+ GLCK G
Sbjct: 273 MLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQG 332

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--------- 110
            + T  ++L E+  +G  PN ++Y++++    R  + +L  E+   +K +G         
Sbjct: 333 DVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYS 392

Query: 111 --------------------------YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
                                     +  D + Y ++I A+ +  +LKEA +  E M+ D
Sbjct: 393 IVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICD 452

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G+  ++V+   L++ +  EG +  A+L LD++ + G   +  T+ ++I+GLCK       
Sbjct: 453 GICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDV 512

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHN 260
                 M K G+  +   Y+ I+D   K   +  A  ++  M  + +    FTY+S+++ 
Sbjct: 513 WGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLING 572

Query: 261 LCKAKRLPSASKLLLSCLKSGV---RILKSA 288
           LC   +LP    L    +  G+   RIL ++
Sbjct: 573 LCHDDKLPEVMTLFKHMIGEGLTPDRILYTS 603



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 7/245 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+ +++NGLCK    ++   +F  + K G+VP+ V Y+I+I G  KA  L+ A 
Sbjct: 489 VVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAF 548

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++ D G  PN  TYT+++     + K    + +   M  +G T D   Y ++IA +
Sbjct: 549 RLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACY 608

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   +K A +   +M T+G+  D   Y  LI  + K   ++ A L ++EM  +G     
Sbjct: 609 CKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTV 668

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI G  K G+ K A +    M + G   + +  +CI+  LG DG  D A    +S
Sbjct: 669 VTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAPDAKL-SCILG-LGNDGD-DFA----DS 721

Query: 246 MEVKD 250
            E KD
Sbjct: 722 QEEKD 726



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 44  ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL--GLE 101
           EL   N L+KGL +  ++   R +  ++  SG +PN  +Y+ +M       K  L    E
Sbjct: 175 ELQVCNFLLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQE 234

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +LS M+ +G   +   Y T +    +  ++K A ++++ +   G   +   +N +I+ +C
Sbjct: 235 LLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFC 294

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
            +G++  A  + D M+K GF  D ++++IL+DGLCK G++      L  M + G   NL 
Sbjct: 295 HDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLV 354

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
           +Y+ ++  L + G+++ A  +F+ ++ +    D   YS ++H  C+
Sbjct: 355 SYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQ 400



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 142/306 (46%), Gaps = 6/306 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL--RTARWILKEL 71
           N +L GL +         +F  ++  G  P + +Y++L+       +L    A+ +L E+
Sbjct: 180 NFLLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEM 239

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PNA TY T +    R ++ K     L  + ++GY  + + +  VI  F   G++
Sbjct: 240 EVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQV 299

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +  + M   G   D+ SY+ L++  CK+G +   Y +L EM + G   +  +++ L
Sbjct: 300 HKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSL 359

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           + GLC+AG ++ A    + +   GF  +   Y+ ++    +   ++   +++  M     
Sbjct: 360 LHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNF 419

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V D++ YSS+++  C+ ++L  A ++    +  G+         +V G  + G   EA  
Sbjct: 420 VPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFL 479

Query: 308 IQSKIR 313
              K+R
Sbjct: 480 FLDKVR 485



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 90/191 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P T  ++I+++G  K      A R++  +   G  P + TY  LI GLC   +
Sbjct: 519 MIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDK 578

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     + K +   G  P+ I YT+++ C  +    K  LEI   M+ +G + D F Y  
Sbjct: 579 LPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTC 638

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+  +  A  +ME+M+  G+   +V+Y  LI  Y K G  + A ++ + M + G
Sbjct: 639 LIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAG 698

Query: 181 FECDKYTHTIL 191
              D     IL
Sbjct: 699 IAPDAKLSCIL 709



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 118 YCTVIAAFVKIGRLKEA-TDYME--------------------------------QMVTD 144
           Y TVI  FV++   ++A   Y+E                                 M   
Sbjct: 146 YATVIRVFVELSMFEDALVTYVEAKKVGVELQVCNFLLKGLVEGNQIMYVRSLFDDMKIS 205

Query: 145 GVQLDIVSYNTLINLYCKEGK--LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
           G   +I SY+ L+++Y    K  LE A  LL EME +G   +  T+   + GLC+A  +K
Sbjct: 206 GPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVK 265

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 258
            A   L+ + + G+  N   +N ++     DG++  A+ VF+ M+    V D  +YS +V
Sbjct: 266 SAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILV 325

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             LCK   + +   +L+   ++G+     +  +++ GL  +G
Sbjct: 326 DGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAG 367


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   ++N ++ G C+      A  +F  L+     P +VTYN L+ GLC+ G 
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ +  E+ + G AP+ +TYT ++    +     +  E    M  +G   D + Y T
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 484

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I   +K+G    A    E+M+  G   D++ YN +++  CK G LE A  LL +M   G
Sbjct: 485 RIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D  T+T +I    + G + KG  +  E ++K G   ++  Y  ++      G+++ A
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSK-GLTPSVVTYTVLIHGHAGKGRLERA 603

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              F  M+ K    +  TY+S+++ LCK +R+  A       ++ G+
Sbjct: 604 FIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI 650



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 155/320 (48%), Gaps = 13/320 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L+GLC+    + A ++   +   G  P++VTY IL+ G CK G L  A+
Sbjct: 405 LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQ 464

Query: 66  WILKELGDSGHAPNAITYTT----IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
               E+   G   ++  Y T     +K    +R + L  E+L+    KG+  D   Y  V
Sbjct: 465 EFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLA----KGFPPDLIIYNVV 520

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           +    K+G L+EA++ +++MV+DGV  D V+Y ++I+ + + G+L     +  EM  +G 
Sbjct: 521 VDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGL 580

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
                T+T+LI G    G ++ A ++   M + G   N+  YN +++ L K  ++D A N
Sbjct: 581 TPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYN 640

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
            F  M  K    + ++Y+ +++  C       A  L    L  GV+       A++  L 
Sbjct: 641 FFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLG 700

Query: 298 HSGCRREAKKIQSKIRMAKI 317
              C+ +A    S +  AK+
Sbjct: 701 KD-CKLQAVHGTSTMPTAKV 719



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 4/288 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L+P     N +L  L        A+ ++R + + G  P +VTYN L+   CK G+
Sbjct: 190 MIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++    +L E+   G APN +TY  ++    +  +++    ++  M + G     + Y  
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +   G L EA    E+MV  G    + +YN+ I   CK G++  A   L +M    
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 369

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
              D  ++  LI G C+ GN+  A L  + +  I     +  YN ++D L + G+++ A 
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 429

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
              + +       D  TY+ +V+  CK   L  A +     L  G+ +
Sbjct: 430 QLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLEL 477



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 4/266 (1%)

Query: 21  CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80
            K    +  L +F  + K    P++   N +++ L     +  A  + + +G+ G  P  
Sbjct: 175 SKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTI 234

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
           +TY T++    +  K + GL++LS M+R+G   +   Y  +I    K G  ++A   + +
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGE 294

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           M+  G+++   +YN LI  Y  +G L  A  L +EM  +G      T+   I GLCK G 
Sbjct: 295 MLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 354

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSS 256
           +  A   L  M       ++ +YN ++    + G +  A  +F+ +     F    TY++
Sbjct: 355 MSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNT 414

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++  LC+   L  A +L +  +  G+
Sbjct: 415 LLDGLCRQGELEVAQQLKVEMINEGI 440



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  +++   +N        +F  +   G  P +VTY +LI G    GR
Sbjct: 540 MVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGR 599

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A     E+ + G  PN ITY +++    + R+        + M  KG   + + Y  
Sbjct: 600 LERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTI 659

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           +I     +G  +EA    +QM+  GVQ D  +++ L+    K+ KL+A +
Sbjct: 660 LINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVH 709



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 98/236 (41%), Gaps = 26/236 (11%)

Query: 29  ALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           ALR+FR  +   GF      +  +++ L +   +R+A W+++ + ++    + I    I 
Sbjct: 98  ALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANM--HRIVDVLIG 155

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
            C       K+ L++L                  I  + K   +++     ++M+   + 
Sbjct: 156 GCVSSEVSVKI-LDLL------------------IWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D+ + N ++ +   +  +  A  +   M + G +    T+  L+D  CK G ++     
Sbjct: 197 PDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDL 256

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVH 259
           L  M + G   N   YN +++ L K G+ + A  +   M        ++TY+ +++
Sbjct: 257 LSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIY 312


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 152/325 (46%), Gaps = 34/325 (10%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG------------------------- 40
           + P   T+NI+L  LCKN   D A ++   +   G                         
Sbjct: 177 MEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR 236

Query: 41  -----FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
                F P +  YN LI G+CK      A  +L E+ + G  PN I+YTTI+        
Sbjct: 237 ELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGN 296

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            +L L +L+ M  +G + +   + ++I  F   G   EA D+ ++M+ +GV  ++V+YN 
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNA 356

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L++  C +  L  A  + ++ME  G   +  T++ LIDG  KAG++ GA     +M   G
Sbjct: 357 LMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHG 416

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              N+ AY C+VD L ++   + A  + E+M+V+    ++ T+++ +  LC + R+  A 
Sbjct: 417 CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAI 476

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGL 296
           K+      SG     +    ++D L
Sbjct: 477 KVFDQMGNSGCFPNTTTYNELLDSL 501



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 115/230 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    +  M++ LC+N   + A  +   +Q     P  VT+N  IKGLC +GR
Sbjct: 412 MITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGR 471

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++G+SG  PN  TY  ++    ++R++     ++  M+ +G   +   Y T
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNT 531

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +   G L EA + + +MV  G + D ++ N +I+ YCK+GK+  A  L+D +    
Sbjct: 532 IIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
           +  D   +T LI G+C    ++ A ++L  M   G   N+  +N +V  L
Sbjct: 592 WHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 9/279 (3%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           ++ AL+ F  +Q     P +  YN ++  L    R +    I   +   G  PN  TY  
Sbjct: 127 SEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNI 186

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++K   +N +     ++L  M  KG   D   Y T+I++  K+G++KEA + +    T  
Sbjct: 187 LLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE-LAMSFTPS 245

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V +    YN LIN  CKE   E A+ LLDEM  +G + +  ++T +I+ L  AGN++ + 
Sbjct: 246 VPV----YNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSL 301

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNL 261
             L  M   G   NL  +  ++      G    A++ ++ M     V +   Y++++H L
Sbjct: 302 AVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGL 361

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           C  + L  A  +      +G         A++DG   +G
Sbjct: 362 CSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAG 400



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P    +N +++GLC  R   +A+ +F  ++ +G  P + TY+ LI G  KAG 
Sbjct: 342 MIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD 401

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +   +   G  PN + YT ++    RN  +     ++  M+ +    +   + T
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNT 461

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I      GR+  A    +QM   G   +  +YN L++   K+ +   A+ L+ +ME +G
Sbjct: 462 FIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRG 521

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+  +I G C AG +  A   L  M   G   +    N ++D   K GK++ AI
Sbjct: 522 IELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI 581

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + + +       D   Y+S++  +C    +  A   L   L  G+
Sbjct: 582 QLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGI 627



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 140/350 (40%), Gaps = 39/350 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP    +N ++NG+CK    + A ++   +   G  P +++Y  +I  L  AG +  + 
Sbjct: 242 FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSL 301

Query: 66  WILKEL----------------------GDS-------------GHAPNAITYTTIMKCC 90
            +L ++                      G S             G  PN + Y  +M   
Sbjct: 302 AVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGL 361

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
              R     + + + M+  G   +   Y  +I  + K G L  A++    M+T G   ++
Sbjct: 362 CSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNV 421

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V+Y  ++++ C+      AY L++ M+ +    +  T    I GLC +G +  A    + 
Sbjct: 422 VAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQ 481

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M   G   N   YN ++D L KD +   A  + + ME +    +  TY+++++  C A  
Sbjct: 482 MGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGM 541

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
           L  A +LL   +  G +        V+D     G    A ++  ++   K
Sbjct: 542 LGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 13/230 (5%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P  +TY  +++     R+      +L  MK +G +     + +VI ++ + G  ++A 
Sbjct: 74  HTP--LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQAL 131

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
               +M    V+  +  YN +++    E + +    +   M+K G E + +T+ IL+  L
Sbjct: 132 KTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKAL 191

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT-- 253
           CK   + GA   L  M+  G D +  +Y  ++  L K GK+       E+ E+  SFT  
Sbjct: 192 CKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVK------EARELAMSFTPS 245

Query: 254 ---YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
              Y+++++ +CK      A +LL   +  G+     +   +++ L  +G
Sbjct: 246 VPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAG 295



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 49/105 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T NI+++  CK    + A+++   L    + P+++ Y  LI G+C    
Sbjct: 552 MVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIG 611

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
           +  A   L+ +   G +PN  T+  +++  F N  +   ++ L A
Sbjct: 612 VEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDA 656



 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 4/162 (2%)

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++Y  +I     E +++    LL +M+ +G  C +     +I    +AG+ + A      
Sbjct: 77  LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYR 136

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M        ++ YN I+D L  + +      ++ +M+      + FTY+ ++  LCK  R
Sbjct: 137 MQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNR 196

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +  A KLL+     G    + +   ++  L   G  +EA+++
Sbjct: 197 VDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL 238


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 145/312 (46%), Gaps = 7/312 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P TATFN ++NG C++   + A ++F  ++     P ++T N L+ G+CK  R+ TA   
Sbjct: 261 PTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEF 320

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +   G   N +TYT  +            +E L  M + G   D   Y T+I    +
Sbjct: 321 FRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQ 380

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL +A+  + ++   G  LD V YN LI+ +CK+ KL+ A   L+EME  G + D  T
Sbjct: 381 AGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVT 440

Query: 188 HTILIDGLCKAGNIKGARLHLEYMN-KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +  LI    K GN K A   ++ M  + G    +  Y  ++     +  ID AI +F+ M
Sbjct: 441 YNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEM 500

Query: 247 E------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                    ++  Y+ ++ +LCK  ++  A  LL      GV    +   ++   LR   
Sbjct: 501 NNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKN 560

Query: 301 CRREAKKIQSKI 312
              +A K+  ++
Sbjct: 561 WLDKAFKLMDRM 572



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 128/274 (46%), Gaps = 5/274 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T  +N +++GLCK    + AL +   ++     P   T+N LI G C++G +  A 
Sbjct: 224 VAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAH 283

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ ++   PN IT  T++    ++ +    +E    M++KG   +   Y   I AF
Sbjct: 284 KLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAF 343

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +  + +A +++++M  DG   D V Y TLI    + G+L+ A  ++ ++++ GF  D+
Sbjct: 344 CNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDR 403

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             + +LI   CK   +  A+  L  M   G   +   YN ++    K G    A    + 
Sbjct: 404 VCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKK 463

Query: 246 MEVKDS-----FTYSSMVHNLCKAKRLPSASKLL 274
           M  ++      FTY +++H  C    +  A K+ 
Sbjct: 464 MTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIF 497



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 10/287 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P T     +++ LC++  T+ A  +   L     + +    N L+ GL KA      
Sbjct: 112 NIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKM 171

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM---KRKGYTF---DGFGY 118
             +++++ D    P  IT+  ++    + R+    LE+   M   K +   F   D   Y
Sbjct: 172 NLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMY 231

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            T+I    K+GR +EA   M +M +D       ++N LIN YC+ G++E A+ L +EME 
Sbjct: 232 NTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMEN 291

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
              E +  T   L+DG+CK   I  A      M + G   N   Y   ++       ++ 
Sbjct: 292 AQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNK 351

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           A+   + M       D+  Y +++  L +A RL  AS ++    ++G
Sbjct: 352 AMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAG 398



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 38/232 (16%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +  ++ GL +    D+A  +   L++ GF  + V YN+LI   CK  +L  A+  
Sbjct: 366 PDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEW 425

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYCTVIAAFV 126
           L E+  +G  P+++TY T++    +   +KL  + +  M + +G +   F Y  +I A+ 
Sbjct: 426 LNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYC 485

Query: 127 KIGRLKEATDYMEQM--VTDGVQLDIVSYNTLINLYCKEGK------------------- 165
               + EA    ++M  V   V  + V YN LI+  CK+ +                   
Sbjct: 486 LNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPN 545

Query: 166 ----------------LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
                           L+ A+ L+D M +Q    D  T  IL + L   G I
Sbjct: 546 TTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSAVGEI 597



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK--HGFVPELVTYNILIKGLCKAGRLRT 63
           L+P   T+  +++  C N   D A+++F+ +        P  V YNILI  LCK  ++  
Sbjct: 470 LSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNF 529

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96
           A  +L ++   G  PN  TY +I K   R++ +
Sbjct: 530 ALSLLDDMKFRGVMPNTTTYNSIFK-ALRDKNW 561



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +   + P T  +NI+++ LCK    + AL +   ++  G +P   TYN + K L     L
Sbjct: 503 VASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWL 562

Query: 62  RTARWILKELGDSGHAPNAIT 82
             A  ++  + +    P+ IT
Sbjct: 563 DKAFKLMDRMVEQACNPDYIT 583



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 96/211 (45%), Gaps = 18/211 (8%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDI------VSYNTLINLYCKEGKLEAAYL--L 172
           +I   +K GR+  A + +++M+    +         + +N L+ +   EG+++   +  L
Sbjct: 45  IINLLLKSGRVDNAMNVLDEMLLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGL 104

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           + +  K     D    T LI  LC++GN   A   L+ +  +    +    N ++  LGK
Sbjct: 105 VSKFGKHNIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGK 164

Query: 233 D---GKIDHAINVFESMEVKDS-FTYSSMVHNLCKAKRLPSASKLL--LSCLKSGVRILK 286
               GK++  +   + M ++ +  T+  ++++LCK +R+  A ++   +   K   ++  
Sbjct: 165 AREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFV 224

Query: 287 SAQ----KAVVDGLRHSGCRREAKKIQSKIR 313
           +        ++DGL   G + EA  +  K+R
Sbjct: 225 APDTIMYNTLIDGLCKVGRQEEALCLMGKMR 255


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 135/274 (49%), Gaps = 6/274 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   ++NI+++G CK R  + AL   R +++ G  P    Y+ +++  CK G +  A  
Sbjct: 95  APNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMD 154

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  E+   G  P+ + +  ++   +R RK     E+  +M  +G   D   Y T+IA   
Sbjct: 155 VFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLC 214

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK- 185
           K  +L EA   +E+M  + V    V+Y TLI+  CK  +L+ AY + ++M +    C + 
Sbjct: 215 KWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEP 274

Query: 186 -YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV-- 242
            Y+  ILI+GLCKA     A+   + M   G    +  YN +++ L    K+  A+ +  
Sbjct: 275 AYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTY 334

Query: 243 --FESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
              + +   + FTY  ++ +LCK  ++  A KLL
Sbjct: 335 FMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLL 368



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 49/319 (15%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN++L+GL + R    A  +FR +   G  P++VTYN +I GLCK  +L  A ++
Sbjct: 166 PDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFL 225

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTVIAAF 125
           L+ +     +P  +TYTT++    +  + +   E+   M       T   +    +I   
Sbjct: 226 LERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGL 285

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA----YLLLDEMEKQGF 181
            K  R  EA +  ++M   G+   +V+YNTL+       KL+ A    Y +LD++     
Sbjct: 286 CKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNM 345

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
               +T+ ILI  LCK   ++ A   L  M   GF  +L+ +  ++ RL + G++D A  
Sbjct: 346 ----FTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFE 401

Query: 242 VFESME---------------------------------------VKDSFTYSSMVHNLC 262
           +++ M                                        V D FTY  +V  LC
Sbjct: 402 LYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLC 461

Query: 263 KAKRLPSASKLLLSCLKSG 281
              +   A KL+   ++ G
Sbjct: 462 WQGKADQARKLVEELVRDG 480



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 136/309 (44%), Gaps = 7/309 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   +  +++ G  K+            + + G  P  + YN LI  LCKAG L  A 
Sbjct: 25  FSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAE 84

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK +     APN ++Y  I+    + R  +  L  L  M+  G+      Y +++ +F
Sbjct: 85  SYLKRMPQHC-APNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSF 143

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + +A D   +M   G + DIV++N L++   +  K+  A  L   M  +G + D 
Sbjct: 144 CKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDV 203

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I GLCK   +  A   LE M +         Y  ++D L K  ++  A  VFE 
Sbjct: 204 VTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEK 263

Query: 246 ME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           M        + +++   +++ LCKA+R   A ++       G+         +++GL  +
Sbjct: 264 MAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLST 323

Query: 300 GCRREAKKI 308
              ++A ++
Sbjct: 324 AKLQDAMEL 332



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 5/179 (2%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           I+  MK  G++ D   +C +I  F K G  +     +++M+  G+  + + YN LI+  C
Sbjct: 16  IVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLC 75

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           K G L  A   L  M  Q    +  ++ I+IDG CKA NI+ A   L  M ++G      
Sbjct: 76  KAGMLAEAESYLKRM-PQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPH 134

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLS 276
           AY+ IV    K G +  A++VF  M  K    D   ++ ++  L +A+++  A +L  S
Sbjct: 135 AYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRS 193



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I   V+   + +A   +E+M   G   D+ S+  LI  + K G  +     LD M + G 
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             +   +  LI  LCKAG +  A  +L+ M +     N+ +YN I+D   K   I+ A+ 
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARNIEKALA 119

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
               ME          YSS+V + CK   +  A
Sbjct: 120 FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKA 152



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 3/135 (2%)

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  +++EM+  GF  D  +H +LI G  K+G+ +     L+ M + G   N   YN ++ 
Sbjct: 13  AEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLIS 72

Query: 229 RLGKDGKIDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
            L K G +  A +  + M      +  +Y+ ++   CKA+ +  A   L    + G    
Sbjct: 73  CLCKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPT 132

Query: 286 KSAQKAVVDGLRHSG 300
             A  ++V     +G
Sbjct: 133 PHAYSSIVQSFCKTG 147


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 4/314 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       AL     L   GF    V+Y  LI G+CK G  R A   
Sbjct: 127 PDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKF 186

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      P+ + Y TI+    + +       + S M  KG + D   Y T+I  F  
Sbjct: 187 LRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCI 246

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LKEA   + +MV   +  ++ +YN L++  CKEGK++ A  +L  M K   + D  T
Sbjct: 247 VGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+DG      +K A+     M+ +G   ++  Y  +++   K+  +D A+N+F+ M 
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K+      TYSS++  LCK+ R+     L+      G         +++DGL  +G   
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLD 426

Query: 304 EAKKIQSKIRMAKI 317
            A  + +K++  +I
Sbjct: 427 RAIALFNKMKDQEI 440



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 152/317 (47%), Gaps = 5/317 (1%)

Query: 2   ICGDLT-PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           I G LT P    +N +++ +CK +    A  +F  +   G   ++VTYN LI G C  G+
Sbjct: 190 IDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGK 249

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +L E+      PN  TY  ++    +  K K    +L+ M +     D   Y T
Sbjct: 250 LKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYST 309

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +  +  +K+A      M   GV  D+ +Y  LIN +CK   ++ A  L  EM ++ 
Sbjct: 310 LMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN 369

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T++ LIDGLCK+G I      ++ M   G  +++  Y+ ++D L K+G +D AI
Sbjct: 370 MVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAI 429

Query: 241 NVFESM---EVKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M   E++ + FT++ ++  LCK  RL  A ++    L  G  +       +++G 
Sbjct: 430 ALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGH 489

Query: 297 RHSGCRREAKKIQSKIR 313
              G   EA  + SK+ 
Sbjct: 490 CKQGLLEEALTMLSKME 506



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 114/202 (56%), Gaps = 1/202 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+ I++NG CKN+  D AL +F+ + +   VP +VTY+ LI GLCK+GR+    
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVW 394

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ D G   + ITY++++    +N      + + + MK +    + F +  ++   
Sbjct: 395 DLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGL 454

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRLK+A +  + ++T G  L++ +YN +IN +CK+G LE A  +L +ME  G   + 
Sbjct: 455 CKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNA 514

Query: 186 YT-HTILIDGLCKAGNIKGARL 206
           +T  TI+I    K  N K  +L
Sbjct: 515 FTFETIIIALFKKDENDKAEKL 536



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI+++ LCK      A  +   + K    P+++TY+ L+ G      
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ +   +   G  P+  TYT ++    +N+     L +   M +K        Y +
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+    D +++M   G   D+++Y++LI+  CK G L+ A  L ++M+ Q 
Sbjct: 380 LIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQE 439

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T TIL+DGLCK G +K A+   + +   G+  N+  YN +++   K G ++ A+
Sbjct: 440 IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME    + ++FT+ +++  L K      A KLL   +  G+
Sbjct: 500 TMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 135/284 (47%), Gaps = 10/284 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C   TP    FN +L+   K ++   A+ +   L+  G  P+L+T NILI   C  G+
Sbjct: 50  MLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQ 109

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L ++   G+ P+ +T  T++K      + K  L     +  +G+  +   Y T
Sbjct: 110 ITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYAT 169

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    KIG  + A  ++ ++     + D+V YNT+I+  CK   +  AY L  EM  +G
Sbjct: 170 LINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKG 229

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI G C  G +K A   L  M     + N+  YN +VD L K+GK+  A 
Sbjct: 230 ISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK 289

Query: 241 NVFESM----EVKDSFTYSS------MVHNLCKAKRLPSASKLL 274
           +V   M       D  TYS+      +V+ + KA+ + +A  L+
Sbjct: 290 SVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T+ I+++ LCK    D+A+  F  +   G  P  V +N L+ GLC   R   A 
Sbjct: 475 LSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAE 534

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN + + TIM       +  +   ++ +M+R G   +   Y T+I   
Sbjct: 535 ELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGH 594

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR  EA   ++ MV+ G++ D++SY+TL+  YCK G+++ AY L  EM ++G     
Sbjct: 595 CLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGA 654

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ ++ GL        A+     M K G   ++  YN I++ L K   +D A  +F+S
Sbjct: 655 VTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQS 714

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +  KD      T++ M+  L K  R   A  L  S    G+
Sbjct: 715 LCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGL 755



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 149/316 (47%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P    FNI+L    K    D A+ +F  + +HG  P++VTY ILI  LCK GR
Sbjct: 435 MVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGR 494

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     ++ + G  PN++ + +++       +++   E+   M  +G   +   + T
Sbjct: 495 VDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNT 554

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G++  A   ++ M   GV+ +++SYNTLI  +C  G+ + A  LLD M   G
Sbjct: 555 IMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVG 614

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D  ++  L+ G CK G I  A      M + G       Y+ I+  L    +   A 
Sbjct: 615 LKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAK 674

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              +N+ +S +  D +TY+ +++ LCK   +  A K+  S     +R        ++D L
Sbjct: 675 ELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVL 734

Query: 297 RHSGCRREAKKIQSKI 312
              G +++A  + + I
Sbjct: 735 FKGGRKKDAMDLFASI 750



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 143/332 (43%), Gaps = 39/332 (11%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+ TP   T+N +++GLCK +  D A  + + +   G   ++VTY+ +I GLCKA  +  
Sbjct: 193 GNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDR 252

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+ + D G  P+ +TY TI+    + +       +L  M  KG   D   Y T+I 
Sbjct: 253 AEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIID 312

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K   +  A   ++ M+   V+ DI +YN LI+ Y   G+ +     L+EM  +G + 
Sbjct: 313 GLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDP 372

Query: 184 DKYTHTILIDGLCKAG---------------------NIKGARLH--------------L 208
           D  T+++L+D LCK G                      I G  LH              L
Sbjct: 373 DVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLL 432

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKA 264
           + M   G   N   +N ++    K   ID A+++F  M       D  TY  ++  LCK 
Sbjct: 433 DLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKL 492

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            R+  A       +  GV        ++V GL
Sbjct: 493 GRVDDAVLKFNQMINDGVTPNSVVFNSLVYGL 524



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 152/342 (44%), Gaps = 39/342 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++++L+ LCKN     A ++F  + + G  P +  Y IL+ G    G +    
Sbjct: 370 LDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLT 429

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G +PN   +  ++    +       + I S M + G + D   Y  +I A 
Sbjct: 430 DLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDAL 489

Query: 126 VKIGRLKEATDYMEQMVTD-----------------------------------GVQLDI 150
            K+GR+ +A     QM+ D                                   GV+ ++
Sbjct: 490 CKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNV 549

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V +NT++   C EG++  A  L+D ME+ G   +  ++  LI G C AG    A   L+ 
Sbjct: 550 VFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDV 609

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M  +G   +L +Y+ ++    K G+ID+A  +F  M  K     + TYS+++  L   +R
Sbjct: 610 MVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRR 669

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
              A +L L+ +KSG +        +++GL  + C  EA KI
Sbjct: 670 FSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKI 711



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 129/287 (44%), Gaps = 4/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N +++GLCK +  D A  + + +   G  P++VTYN +I GLCKA  
Sbjct: 260 MIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQA 319

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ + D    P+  TY  ++       ++K  +  L  M  +G   D   Y  
Sbjct: 320 VDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSL 379

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+  EA      M+  G++ ++  Y  L++ Y   G +     LLD M   G
Sbjct: 380 LLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANG 439

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + Y   I++    K   I  A      M++ G   ++  Y  ++D L K G++D A+
Sbjct: 440 ISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAV 499

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             F  M       +S  ++S+V+ LC   R   A +L       GVR
Sbjct: 500 LKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVR 546



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG---FVPELVTYNILIKGLCKAGRLRTA 64
           P   + N +L GLC  +  + AL +   + + G     P +VTYN +I GLCKA  +  A
Sbjct: 159 PNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRA 218

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+ + D G   + +TY+TI+    + +       +L  M  KG   D   Y T+I  
Sbjct: 219 EGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDG 278

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K   +  A   ++ M+  GV+ D+V+YNT+I+  CK   ++ A  +L  M  +  + D
Sbjct: 279 LCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPD 338

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  LI G    G  K     LE M   G D ++  Y+ ++D L K+GK   A  +F 
Sbjct: 339 IQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFY 398

Query: 245 SM---EVKDSFT-YSSMVHNLCKAKRLPSASKLLLSCLKSGVR---------ILKSAQKA 291
            M    +K + T Y  ++H       +   + LL   + +G+          +   A+KA
Sbjct: 399 CMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKA 458

Query: 292 VVDGLRH 298
           ++D   H
Sbjct: 459 MIDEAMH 465



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 8/309 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I+    C+    ++    F  + K G+    V  N L+ GLC A R+  A  I
Sbjct: 88  PDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDI 147

Query: 68  L-KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG---YTFDGFGYCTVIA 123
           L + + + G  PN ++  T++K     ++ +  LE+L  M   G    T +   Y T+I 
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIID 207

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K   +  A   ++ M+  GV+LD+V+Y+T+I+  CK   ++ A  +L  M  +G + 
Sbjct: 208 GLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKP 267

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  +IDGLCKA  +  A   L++M   G   ++  YN I+D L K   +D A  V 
Sbjct: 268 DVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVL 327

Query: 244 ESM---EVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M   +VK D  TY+ ++H            + L      G+         ++D L  +
Sbjct: 328 QHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKN 387

Query: 300 GCRREAKKI 308
           G   EA+KI
Sbjct: 388 GKCTEARKI 396



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 144/314 (45%), Gaps = 8/314 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N +++GLCK +  D A  + + +      P++ TYN LI G    G 
Sbjct: 295 MIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGE 354

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +     L+E+   G  P+ +TY+ ++    +N K     +I   M RKG   +   Y  
Sbjct: 355 WKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGI 414

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +   G + + TD ++ MV +G+  +   +N ++  Y K+  ++ A  +   M + G
Sbjct: 415 LLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHG 474

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN------CIVDRLGKDG 234
              D  T+ ILID LCK G +  A L    M   G   N   +N      C VDR  K  
Sbjct: 475 LSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAE 534

Query: 235 KIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           ++     +++     +   +++++ NLC   ++  A +L+ S  + GVR    +   ++ 
Sbjct: 535 EL--FFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIG 592

Query: 295 GLRHSGCRREAKKI 308
           G   +G   EA ++
Sbjct: 593 GHCLAGRTDEAAQL 606



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 110/232 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N ++ G C    TD A ++   +   G  P+L++Y+ L++G CK GR+  A  +
Sbjct: 582 PNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCL 641

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  P A+TY+TI++  F  R++    E+   M + G  +D + Y  ++    K
Sbjct: 642 FREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCK 701

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + EA    + + +  ++ +I+++  +I++  K G+ + A  L   +   G   +  T
Sbjct: 702 TNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVT 761

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           + I++  + + G +         M K G   +    N I+  L   G+I  A
Sbjct: 762 YCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRA 813



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 106/244 (43%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   +++ +L G CK    DNA  +FR + + G  P  VTY+ +++GL    R
Sbjct: 610 MVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRR 669

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +   +  SG   +  TY  I+    +        +I  ++  K    +   +  
Sbjct: 670 FSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTI 729

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR K+A D    + + G+  ++V+Y  ++    +EG L+    L   MEK G
Sbjct: 730 MIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSG 789

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D      +I  L   G I  A  +L  ++++ F       + ++    ++   +HA 
Sbjct: 790 CTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFSREEYKNHAK 849

Query: 241 NVFE 244
           ++ E
Sbjct: 850 SLPE 853



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           M +  ++ V+ D+ +Y+ L   +C+ G++E  +     + K G+  ++     L++GLC 
Sbjct: 78  MARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCD 137

Query: 198 AGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-------VK 249
           A  +  A  + L  M + G   N+ + N ++  L  + +++ A+ +  +M          
Sbjct: 138 AKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTP 197

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           +  TY++++  LCKA+ +  A  +L   +  GV++       ++DGL    C+ +A
Sbjct: 198 NVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGL----CKAQA 249


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 152/305 (49%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ +++ LC++   D A+ +F+ ++  G    +VTYN L++GLCKAG+      +LK++
Sbjct: 220 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 279

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 PN IT+  ++    +  K +   E+   M  +G + +   Y T++  +    RL
Sbjct: 280 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 339

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + ++ MV +    DIV++ +LI  YC   +++    +   + K+G   +  T++IL
Sbjct: 340 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 399

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           + G C++G IK A    + M   G   ++  Y  ++D L  +GK++ A+ +FE ++    
Sbjct: 400 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 459

Query: 252 ----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
                 Y++++  +CK  ++  A  L  S    GV+        ++ GL   G   EA  
Sbjct: 460 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 519

Query: 308 IQSKI 312
           +  K+
Sbjct: 520 LLRKM 524



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 148/300 (49%), Gaps = 4/300 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFN++L+   K      A  +++ +   G  P ++TYN L+ G C   R
Sbjct: 279 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 338

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L  +  +  +P+ +T+T+++K     ++   G+++   + ++G   +   Y  
Sbjct: 339 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 398

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G++K A +  ++MV+ GV  D+++Y  L++  C  GKLE A  + ++++K  
Sbjct: 399 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 458

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +     +T +I+G+CK G ++ A      +   G   N+  Y  ++  L K G +  A 
Sbjct: 459 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 518

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME      +  TY++++    +   L +++KL+      G     S+ K V+D L
Sbjct: 519 ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 578



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N  C+   T  A  +   + K G+ P+  T+N LIKGL   G++  A  ++  +
Sbjct: 115 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 174

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++G  P+ +TY +I+    R+    L L++L  M+ +    D F Y T+I +  + G +
Sbjct: 175 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCI 234

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A    ++M T G++  +V+YN+L+   CK GK     LLL +M  +    +  T  +L
Sbjct: 235 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 294

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           +D   K G ++ A    + M   G   N+  YN ++D      ++  A N+ + M     
Sbjct: 295 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 354

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             D  T++S++   C  KR+    K+  +  K G+         +V G   SG
Sbjct: 355 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 407



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 157/321 (48%), Gaps = 18/321 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T TFN ++ GL        A+ +   + ++G  P++VTYN ++ G+C++G    A  +
Sbjct: 146 PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDL 205

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ +     +  TY+TI+    R+      + +   M+ KG       Y +++    K
Sbjct: 206 LRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCK 265

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +    ++ MV+  +  +++++N L++++ KEGKL+ A  L  EM  +G   +  T
Sbjct: 266 AGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIIT 325

Query: 188 HTILIDGLCKAGNIKGARLHLEYM--NK-----IGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           +  L+DG C    +  A   L+ M  NK     + F S ++ Y C+V R      +D  +
Sbjct: 326 YNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY-CMVKR------VDDGM 378

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            VF ++     V ++ TYS +V   C++ ++  A +L    +  GV         ++DGL
Sbjct: 379 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 438

Query: 297 RHSGCRREAKKIQSKIRMAKI 317
             +G   +A +I   ++ +K+
Sbjct: 439 CDNGKLEKALEIFEDLQKSKM 459



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 131/278 (47%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    F+   + + + +  +  L   + L+ +G    + T NI+I   C+  +
Sbjct: 69  MIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCK 128

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L ++   G+ P+  T+ T++K  F   K    + ++  M   G   D   Y +
Sbjct: 129 TCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNS 188

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G    A D + +M    V+ D+ +Y+T+I+  C++G ++AA  L  EME +G
Sbjct: 189 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 248

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+  L+ GLCKAG      L L+ M       N+  +N ++D   K+GK+  A 
Sbjct: 249 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 308

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +++ M  +    +  TY++++   C   RL  A+ +L
Sbjct: 309 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 346



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 4/260 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+A+ +F+ + +   +P LV ++     + +  +        K+L  +G A N  T   +
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 119

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  K      +L  + + GY  D   + T+I      G++ EA   +++MV +G 
Sbjct: 120 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q D+V+YN+++N  C+ G    A  LL +ME++  + D +T++ +ID LC+ G I  A  
Sbjct: 180 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 239

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             + M   G  S++  YN +V  L K GK +    + + M     V +  T++ ++    
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 299

Query: 263 KAKRLPSASKLLLSCLKSGV 282
           K  +L  A++L    +  G+
Sbjct: 300 KEGKLQEANELYKEMITRGI 319



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L     T++I++ G C++     A  +F+ +  HG +P+++TY IL+ GLC  G+L  A 
Sbjct: 389 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 448

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I ++L  S      + YTTI++   +  K +    +  ++  KG   +   Y  +I+  
Sbjct: 449 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 508

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L EA   + +M  DG   +  +YNTLI  + ++G L A+  L++EM+  GF  D 
Sbjct: 509 CKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADA 568

Query: 186 YTHTILIDGLCKAGNIKGARLHLEY 210
            +  ++ID L  A      RL L Y
Sbjct: 569 SSIKMVIDMLLSAMK----RLTLRY 589


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYT--DNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           M      P TAT+N+++   C +     D+A+R+FR + K    P+  +YN +I GLC+ 
Sbjct: 164 MRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGLCRR 219

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           GRL  AR +  E+  +G AP  +TYTT++    R   +   L++   M R+G   +   Y
Sbjct: 220 GRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTY 279

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            ++I    K GR   A + +++MV +    + ++Y+++I+  CKEG L  A  +LD M  
Sbjct: 280 SSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRL 339

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY-------NCIVDRLG 231
           QG + D      LI GLC AG    A  +L+ MN  G   N   +       + +V  L 
Sbjct: 340 QGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALC 399

Query: 232 KDGKIDHAINVFESMEVKDSFTYSSMVHNLCK 263
             G++  A  V++SM  +   T  +  H L +
Sbjct: 400 SKGEVVRAFQVYQSMRTRGISTKPTTFHLLVE 431



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 10/217 (4%)

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
           SA    G       Y  V+AA V    L  A   +  M   G      +YN L+  +C +
Sbjct: 127 SAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSD 186

Query: 164 G--KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
               ++ A  +   + K     D  ++  +IDGLC+ G +  AR     M   G    + 
Sbjct: 187 AAVPIDDAVRVFRNIPKP----DACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVV 242

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            Y  ++  L ++   D A+ +F+ M     + +  TYSS++  LCK  R  SA +LL   
Sbjct: 243 TYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRM 302

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           +K           +V+DGL   GC  +A +I  ++R+
Sbjct: 303 VKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRL 339



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 3/160 (1%)

Query: 152 SYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            + +L+  Y +  + L A +L        G      ++T ++  L    ++  AR  L  
Sbjct: 104 PFLSLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLAD 163

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDG--KIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLP 268
           M   GF      YN +V     D    ID A+ VF ++   D+ +Y++++  LC+  RLP
Sbjct: 164 MRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCRRGRLP 223

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            A  L    + +G          ++  L    C  +A K+
Sbjct: 224 EARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKL 263


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 139/268 (51%), Gaps = 7/268 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N +++G CK    +NAL +F  +++ G   + VTYN L+ GLC +GR   A  +++++ 
Sbjct: 177 YNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMV 236

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                PN IT+T ++    R  K+    +    M R+    D F Y ++I      G++ 
Sbjct: 237 MRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVD 296

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   ++ MVT G   D+V+YNTLIN +CK  +++    L+ EM ++G   D  T   +I
Sbjct: 297 EAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTII 356

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            G  +AG    A+   E  +++G   N+  Y+ ++  L  + +++ A+ +FESM+     
Sbjct: 357 QGYFQAGRPDAAQ---EIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEME 413

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLS 276
            D  TY+ ++H +C    +  A  L  S
Sbjct: 414 LDITTYNIVIHGMCMIGNVEDAWDLFCS 441



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 153/317 (48%), Gaps = 6/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    F+ +L+ + K++  D  + +F  ++  G   +L TYNI+I  LC+  R
Sbjct: 60  MIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSR 119

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
              A  ++ ++   G+ P+ +T ++++   C  NR +   ++++S M+      D   Y 
Sbjct: 120 FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFG-AVDLVSKMEEMRCKLDVVIYN 178

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I  F K G +  A     +M  DGV+ D V+YN+L+   C  G+   A  L+ +M  +
Sbjct: 179 TIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMR 238

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               +  T T LI+   + G    A+   E M +   D ++  YN ++  L   G++D A
Sbjct: 239 DIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEA 298

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             + + M  K    D  TY+++++  CK KR+   +KL+    + G+ +       ++ G
Sbjct: 299 KQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQG 358

Query: 296 LRHSGCRREAKKIQSKI 312
              +G    A++I S++
Sbjct: 359 YFQAGRPDAAQEIFSRM 375



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P   TF  ++N   +      A + +  + +    P++ TYN +I GLC  G+
Sbjct: 235 MVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQ 294

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ IL  +   G  P+ +TY T++    + ++   G +++  M ++G   D   + T
Sbjct: 295 VDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNT 354

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + + GR   A +   +M   G + +I +Y+ L+   C   ++E A +L + M+K  
Sbjct: 355 IIQGYFQAGRPDAAQEIFSRM---GSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSE 411

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D  T+ I+I G+C  GN++ A      ++  G + ++  Y  ++    +    D A 
Sbjct: 412 MELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKAD 471

Query: 241 NVFESME 247
            ++  M+
Sbjct: 472 FLYRKMQ 478



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 3/174 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG CK +  D   ++ R + + G V + VT+N +I+G  +AGR   A+ I
Sbjct: 312 PDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEI 371

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +G     PN  TY+ ++     N + +  L +  +M++     D   Y  VI     
Sbjct: 372 FSRMGSR---PNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCM 428

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           IG +++A D    +   G++ D+V+Y T+I+ +C++   + A  L  +M++ G 
Sbjct: 429 IGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGL 482



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 4/191 (2%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA D    M+       IV ++ L++   K    +    L   ME  G   D YT+ I
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           +I+ LC+      A   +  M K G++ ++   + +++   +  ++  A+++   ME   
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D   Y++++   CK   + +A  L     + GVR       ++V GL  SG R +A 
Sbjct: 170 CKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAA 229

Query: 307 KIQSKIRMAKI 317
           ++   + M  I
Sbjct: 230 RLMRDMVMRDI 240



 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 37/68 (54%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+NI+++G+C     ++A  +F  L   G  P++VTY  +I G C+      A ++ ++
Sbjct: 417 TTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRK 476

Query: 71  LGDSGHAP 78
           + + G  P
Sbjct: 477 MQEDGLLP 484


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 140/304 (46%), Gaps = 4/304 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G CK    D+A  +   ++ +   P   TYN LI GLCK  ++  A 
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++ +   +P+ ITY +++    +    +    +LS M   G   D + Y   I   
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR++EA    + +   GV+ + V Y  LI+ YCK GK++ AY LL+ M       + 
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS 544

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+ +LI+GLCK   +K A   +  M  +G    +  Y  ++  + KDG  DHA+ VF  
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D  TY++ +H       L     ++    + G+         ++DG    G 
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664

Query: 302 RREA 305
              A
Sbjct: 665 THRA 668



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 139/294 (47%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+  ++ G C+N+  DNA  +F  + + G     V+Y  LI GLC+AGR+  A 
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEAL 284

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++ +    P   TYT ++     + +    L + + MK KG   +   Y  +I   
Sbjct: 285 KLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGL 344

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA   + +M   G+   +V+YN LI+ YCKEG ++ A+ +LD ME      + 
Sbjct: 345 CKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNT 404

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI GLCK   +  A   L  M +     +L  YN ++    K   ++ A  +   
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M     V D +TYS  +  LCK  R+  A  L  S    GV+  +    A++DG
Sbjct: 465 MNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +L  L K    D    ++  L  +   P + T+N ++ G CK G +  A   
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++  +G  P+  TYT+++    RN+      E+   M +KG   +   Y  +I    +
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCE 276

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA      M  D     + +Y  LI      G+   A  L +EM+++G E + +T
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LIDGLCK   +  AR  L  M++ G   ++  YN ++D   K+G ID A  + + ME
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                 ++ TY+ ++  LCK +++  A  LL   L+  +    S      + L H  C+
Sbjct: 397 SNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKL----SPSLITYNSLIHGQCK 451



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 113/241 (46%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T+N +++G CK    ++A R+   + ++G VP+  TY++ I  LCK GR+  A 
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G   N + YT ++    +  K  +   +L  M       + + Y  +I   
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++KEA+  + +M+T GV+  +V+Y  LI    K+G  + A  + + M   G++ D 
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDV 614

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T  +      G ++     +  MN+ G   +L  Y  ++D   + G    A +  + 
Sbjct: 615 CTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKC 674

Query: 246 M 246
           M
Sbjct: 675 M 675



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 125/291 (42%), Gaps = 22/291 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+++ ++ LCK    + A  +F  ++  G     V Y  LI G CK G++  A 
Sbjct: 470 LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAY 529

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ + +    PN+ TY  +++   + +K K    +++ M   G       Y  +I   
Sbjct: 530 SLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEM 589

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K G    A      MV+ G Q D+ +Y   ++ Y  +G LE    ++ +M ++G   D 
Sbjct: 590 LKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDL 649

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH------- 238
            T+T+LIDG  + G    A   L+ M   G   +L   + ++  L  + ++         
Sbjct: 650 VTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGI 709

Query: 239 -----------AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
                      A+ +FE M       D   Y +++   C+ +RL  A  L+
Sbjct: 710 DSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLV 760



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 141/318 (44%), Gaps = 22/318 (6%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G CK    D A  +   +     +P   TYN+LI+GLCK  +++ A  ++ ++ 
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P  +TYT ++    ++  +   L++ + M   GY  D   Y   + A+   G L+
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLE 631

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E  D + +M  +G+  D+V+Y  LI+ Y + G    A+  L  M   G +   Y  +ILI
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691

Query: 193 DGLCKAGNIKGARLH---------LEY---------MNKIGFDSNLEAYNCIVDRLGKDG 234
             L     +K  R           LEY         M + G   ++  Y  ++    +  
Sbjct: 692 KNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQE 751

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           +++ A  +   M+ +        Y+S++   CK      A +L+ + +++G+  L  + K
Sbjct: 752 RLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYK 811

Query: 291 AVVDGLRHSGCRREAKKI 308
            +V GL   G   +AK +
Sbjct: 812 LLVCGLYIEGSNEKAKAV 829



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 118/276 (42%), Gaps = 22/276 (7%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+   L+        +    +   + + G +P+LVTY +LI G  + G    A   
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDF 671

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNR-----------------KYKLGLEILSAMKRK 109
           LK + D+G  P+    + ++K     NR                 +Y++ L++   M   
Sbjct: 672 LKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEH 731

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           G T D   Y  +IA F +  RL+EA   +  M   G+      YN+L++  CK G    A
Sbjct: 732 GCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEA 791

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L+D M + G      ++ +L+ GL   G+ + A+     +   G++ +  A+  ++D 
Sbjct: 792 VRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDG 851

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
           L K   +D    + + ME K    +  TYS ++  L
Sbjct: 852 LLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 18/264 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+ I++  + K+   D+AL++F  +   G+ P++ TY   +      G 
Sbjct: 570 MLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGM 629

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     ++ ++ + G  P+ +TYT ++    R        + L  M   G     +    
Sbjct: 630 LEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSI 689

Query: 121 VIAAFVKIGRLKE------------------ATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           +I       R+KE                  A    E+MV  G  +D+  Y  LI  +C+
Sbjct: 690 LIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQ 749

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           + +LE A  L+  M+++G    +  +  L+D  CK G    A   ++ M + G    LE+
Sbjct: 750 QERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLES 809

Query: 223 YNCIVDRLGKDGKIDHAINVFESM 246
           Y  +V  L  +G  + A  VF  +
Sbjct: 810 YKLLVCGLYIEGSNEKAKAVFHGL 833


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 4/258 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G CK    D+A  +   ++ +   P   TYN LI GLCK  ++  A 
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++ +   +P+ ITY +++    +    +    +LS M   G   D + Y   I   
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR++EA    + +   GV+ + V Y  LI+ YCK GK++ AY LL+ M       + 
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS 544

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+ +LI+GLCK   +K A   +  M  +G    +  Y  ++  + KDG  DHA+ VF  
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604

Query: 246 MEV----KDSFTYSSMVH 259
           M       D  TY++ +H
Sbjct: 605 MVSLGYQPDVCTYTAFLH 622



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 4/299 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++   L P T T+  ++ G C+N+  DNA  +F  + + G     V+Y  LI GLC+AGR
Sbjct: 220 IVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGR 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++ +    P   TYT ++     + +    L + + MK KG   +   Y  
Sbjct: 280 INEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  ++ EA   + +M   G+   +V+YN LI+ YCKEG ++ A+ +LD ME   
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  LI GLCK   +  A   L  M +     +L  YN ++    K   ++ A 
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +   M     V D +TYS  +  LCK  R+  A  L  S    GV+  +    A++DG
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 129/271 (47%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +L  L K    D    ++  L  +   P + T+N ++ G CK G +  A   
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++  +G  P+  TYT+++    RN+      E+   M +KG   +   Y  +I    +
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCE 276

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA      M  D     + +Y  LI      G+   A  L +EM+++G E + +T
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+LIDGLCK   +  AR  L  M++ G   ++  YN ++D   K+G ID A  + + ME
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLL 274
                 ++ TY+ ++  LCK +++  A  LL
Sbjct: 397 SNSCGPNTRTYNELICGLCKKRKVHKAMALL 427



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 123/266 (46%), Gaps = 10/266 (3%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G CK    D A  +   +     +P   TYN+LI+GLCK  +++ A  ++ ++ 
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P  +TYT ++    ++  +   L++ + M   GY  D   Y   + A+   G L+
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLE 631

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           E  D + +M  +G+  D+V+Y  LI+ Y + G    A+  L  M   G +   Y  +ILI
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
             L     +K  R      ++IG DS     +  +  + K  + + A+ +FE M      
Sbjct: 692 KNLSHENRMKETR------SEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCT 745

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D   Y +++   C+ +RL  A  L+
Sbjct: 746 IDVSIYGALIAGFCQQERLEEAQGLV 771



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 113/241 (46%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T+N +++G CK    ++A R+   + ++G VP+  TY++ I  LCK GR+  A 
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G   N + YT ++    +  K  +   +L  M       + + Y  +I   
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++KEA+  + +M+T GV+  +V+Y  LI    K+G  + A  + + M   G++ D 
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDV 614

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T  +      G ++     +  MN+ G   +L  Y  ++D   + G    A +  + 
Sbjct: 615 CTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKC 674

Query: 246 M 246
           M
Sbjct: 675 M 675



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 111/268 (41%), Gaps = 29/268 (10%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+N+++ GLCK +    A  +   +   G  P +VTY ILI  + K G    A  +
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +   G+ P+  TYT  +   F     +   ++++ M  +G   D   Y  +I  + +
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL--------------------- 166
           +G    A D+++ MV  G +  +   + LI     E ++                     
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIA 721

Query: 167 --------EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
                   E A  L ++M + G   D   +  LI G C+   ++ A+  + +M + G   
Sbjct: 722 DVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSP 781

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESM 246
           + + YN ++D   K G    A+ + ++M
Sbjct: 782 SEDIYNSLLDCCCKLGVYAEAVRLVDAM 809



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 8/247 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+ ++++G  +   T  A    + +   G  P L   +ILIK L    R++  R
Sbjct: 645 ILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR 704

Query: 66  WILKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
               E+G DS    N++    +    ++  +Y++ L++   M   G T D   Y  +IA 
Sbjct: 705 ---SEIGIDSVSNVNSVDIADV----WKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAG 757

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F +  RL+EA   +  M   G+      YN+L++  CK G    A  L+D M + G    
Sbjct: 758 FCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPL 817

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++ +L+ GL   G+ + A+     +   G++ +  A+  ++D L K   +D    + +
Sbjct: 818 LESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELID 877

Query: 245 SMEVKDS 251
            ME KD+
Sbjct: 878 IMEEKDA 884



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 116/275 (42%), Gaps = 29/275 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+ I++  + K+   D+AL++F  +   G+ P++ TY   +      G 
Sbjct: 570 MLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGM 629

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC---------------CFRNRKYKLGLEILSA 105
           L     ++ ++ + G  P+ +TYT ++                 C  +   K  L I+S 
Sbjct: 630 LEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSI 689

Query: 106 M-------KRKGYTFDGFGYCTV-------IAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           +        R   T    G  +V       IA   K    + A    E+MV  G  +D+ 
Sbjct: 690 LIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVS 749

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
            Y  LI  +C++ +LE A  L+  M+++G    +  +  L+D  CK G    A   ++ M
Sbjct: 750 IYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAM 809

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + G    LE+Y  +V  L  +G  + A  VF  +
Sbjct: 810 VENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGL 844


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 149/287 (51%), Gaps = 6/287 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D++P   TFNI+++G  K+     ++++F+ +      P +++YN LI GLC  G+
Sbjct: 287 MVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGK 346

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++  +G  PN ITY  ++    +N   K  L++  ++K +G       Y  
Sbjct: 347 ISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNM 406

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+ K+G++ +     E+M  +G+  D+ +YN LI   C+ G +EAA  L D++  +G
Sbjct: 407 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T  IL++G C+ G  + A + L+ M+K+G       YN ++    K+G +  A 
Sbjct: 467 LP-DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAAT 525

Query: 241 NVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           N+   ME +     +  +Y+ ++    +  +L  A+ LL   L+ G+
Sbjct: 526 NMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGL 572



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 154/319 (48%), Gaps = 6/319 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK--- 57
           MI   + P   TFN+++N LCK    + A  +   ++ +G  P +V+YN LI G CK   
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGG 273

Query: 58  AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
            G++  A  +LKE+ ++  +PN  T+  ++   +++      +++   M  +    +   
Sbjct: 274 NGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVIS 333

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y ++I      G++ EA    ++MV+ GVQ ++++YN LIN +CK   L+ A  +   ++
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVK 393

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            QG       + +LID  CK G I       E M + G   ++  YNC++  L ++G I+
Sbjct: 394 GQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE 453

Query: 238 HAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            A  +F+ +  K   D  T+  ++   C+      A+ LL    K G++        V+ 
Sbjct: 454 AAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMK 513

Query: 295 GLRHSGCRREAKKIQSKIR 313
           G    G  + A  +++++ 
Sbjct: 514 GYCKEGNLKAATNMRTQME 532



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 10/268 (3%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +M+  L +NR  D    +++ + +    P + T+N++I  LCK G++  AR +++++   
Sbjct: 194 LMIALLKENRSAD-VEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVY 252

Query: 75  GHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           G +PN ++Y T++    K     + YK    +L  M     + +   +  +I  F K   
Sbjct: 253 GCSPNVVSYNTLIDGYCKLGGNGKMYKAD-AVLKEMVENDVSPNLTTFNILIDGFWKDDN 311

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L  +    ++M+   V+ +++SYN+LIN  C  GK+  A  + D+M   G + +  T+  
Sbjct: 312 LPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNA 371

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           LI+G CK   +K A      +   G       YN ++D   K GKID    + E ME   
Sbjct: 372 LINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            V D  TY+ ++  LC+   + +A KL 
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLF 459



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 2/203 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T  +N++++  CK    D+   +   +++ G VP++ TYN LI GLC+ G +  A+ 
Sbjct: 398 VPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKK 457

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  +L   G  P+ +T+  +M+   R  + +    +L  M + G       Y  V+  + 
Sbjct: 458 LFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYC 516

Query: 127 KIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           K G LK AT+   QM  +  +++++ SYN L+  Y ++GKLE A +LL+EM ++G   ++
Sbjct: 517 KEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNR 576

Query: 186 YTHTILIDGLCKAGNIKGARLHL 208
            T+ I+ + +   G +     HL
Sbjct: 577 ITYEIVKEEMVDQGFVPDIEGHL 599



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 120/265 (45%), Gaps = 7/265 (2%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           L+  L K  R     ++ KE+      PN  T+  ++    +  K     +++  MK  G
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253

Query: 111 YTFDGFGYCTVIAAFVKI---GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
            + +   Y T+I  + K+   G++ +A   +++MV + V  ++ ++N LI+ + K+  L 
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLP 313

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            +  +  EM  Q  + +  ++  LI+GLC  G I  A    + M   G   NL  YN ++
Sbjct: 314 GSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373

Query: 228 DRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +   K+  +  A+++F S++    V  +  Y+ ++   CK  ++     L     + G+ 
Sbjct: 374 NGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKI 308
                   ++ GL  +G    AKK+
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKL 458



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 109/234 (46%), Gaps = 7/234 (2%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N+I    ++     N +++LG E        GY         ++ A +K  R  +     
Sbjct: 152 NSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVY 211

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK- 197
           ++M+   +Q ++ ++N +IN  CK GK+  A  ++++M+  G   +  ++  LIDG CK 
Sbjct: 212 KEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKL 271

Query: 198 --AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----S 251
              G +  A   L+ M +     NL  +N ++D   KD  +  ++ VF+ M  +D     
Sbjct: 272 GGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNV 331

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            +Y+S+++ LC   ++  A  +    + +GV+       A+++G   +   +EA
Sbjct: 332 ISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEA 385



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G +L  +S   L+    KE +      +  EM ++  + + +T  ++I+ LCK G +  A
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKIDHAINVFESMEVKDS----FTYSSM 257
           R  +E M   G   N+ +YN ++D   +LG +GK+  A  V + M   D      T++ +
Sbjct: 243 RDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNIL 302

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           +    K   LP + K+    L   V+    +  ++++GL + G   EA  ++ K+  A +
Sbjct: 303 IDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGV 362


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 143/269 (53%), Gaps = 4/269 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           AT+  +++G C+    ++A R+  G+  H        +N LI  LC+ GR+  A  +L  
Sbjct: 129 ATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDG 188

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G AP+ +TY  +++   + R Y+  LE++  M+ +G   +   Y  +I A  + G 
Sbjct: 189 MLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGD 248

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + +A + +  + + G + + V+YNT++  +C   +   A  +LDEM ++    ++ T  +
Sbjct: 249 VDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNV 308

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248
           +I+ LC+ G ++   L+LE M+K G  +N+  YN ++  + + G +D A+ +  +M+   
Sbjct: 309 IINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFG 368

Query: 249 --KDSFTYSSMVHNLCKAKRLPSASKLLL 275
              D  TY++++  LC A R   A +L++
Sbjct: 369 CKPDIVTYNTVLKGLCSADRWEDAEELMI 397



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C    P   T+NI+L   CK R    AL +   ++  G  P  VTYN++I  +C+ G 
Sbjct: 189 MLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGD 248

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +L  L   G  PN + Y T++K      ++    EIL  M R+    +      
Sbjct: 249 VDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNV 308

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    + G L++ T Y+E+M   G   ++V+YN +I+  C++G +++A  LL  M+  G
Sbjct: 309 IINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFG 368

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+  ++ GLC A   + A   +  M++     +   +N I+    + G I  A 
Sbjct: 369 CKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAF 428

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            VF+ M  K    +S TYS+++  L KA ++  A +LL
Sbjct: 429 EVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELL 466



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 146/303 (48%), Gaps = 4/303 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +++ LC+     +AL +  G+   G  P++VTYNIL++  CK    R A  ++  +  
Sbjct: 167 NPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRA 226

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G  PN +TY  I+    R        E+L+++  +G   +   Y TV+  F  I R  +
Sbjct: 227 EGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVD 286

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A + +++MV +    +  + N +IN  C++G L+   L L++M K G   +  T+  +I 
Sbjct: 287 ADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVIS 346

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVK 249
           G+C+ GN+  A   L  M   G   ++  YN ++  L    + + A    I + ++  + 
Sbjct: 347 GMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLP 406

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           D+ T+++++   C+   +  A ++     + G     +    ++ GL  +G   +A ++ 
Sbjct: 407 DNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELL 466

Query: 310 SKI 312
           +++
Sbjct: 467 NEM 469



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 128/265 (48%), Gaps = 5/265 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P  AT N+++N LC+             + KHG    +VTYN +I G+C+ G 
Sbjct: 294 MVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGN 353

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A  +L  +   G  P+ +TY T++K      +++   E++  M +     D   + T
Sbjct: 354 VDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNT 413

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ + + G + +A +  +QM   G   +  +Y+T+I    K GK+E A  LL+EM  +G
Sbjct: 414 IISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKG 473

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  DK  + +L + L K   I+     +  +   G       YN ++  L ++GK D+AI
Sbjct: 474 FNTDKM-YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAI 532

Query: 241 NVFESME----VKDSFTYSSMVHNL 261
           +V   M     + D  TY  ++  L
Sbjct: 533 DVLADMVSCGCMPDESTYIILIEGL 557



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 150/310 (48%), Gaps = 7/310 (2%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P T  +N +L G C   R+ D A  +   + +    P   T N++I  LC+ G L+    
Sbjct: 266 PNTVNYNTVLKGFCSIERWVD-ADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTL 324

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L+++   G   N +TY  ++            LE+LS M+  G   D   Y TV+    
Sbjct: 325 YLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLC 384

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
              R ++A + M +M  +    D  ++NT+I+ +C++G +  A+ +  +M ++G   +  
Sbjct: 385 SADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNST 444

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ +I GL KAG ++ A   L  M   GF+++ + Y  + + L K+ KI+  + V   +
Sbjct: 445 TYSTIIGGLTKAGKMEQALELLNEMANKGFNTD-KMYRVLTESLNKEDKIEEVVQVVHKL 503

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +       +  Y++++  LC+  +   A  +L   +  G    +S    +++GL + G  
Sbjct: 504 QDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYS 563

Query: 303 REAKKIQSKI 312
           +EA+++ S++
Sbjct: 564 KEARELLSRL 573



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 114/250 (45%), Gaps = 4/250 (1%)

Query: 9   CTA---TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           CTA   T+N +++G+C+    D+AL +   +Q  G  P++VTYN ++KGLC A R   A 
Sbjct: 334 CTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAE 393

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ ++  +   P+  T+ TI+    +        E+   M  KG   +   Y T+I   
Sbjct: 394 ELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGL 453

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++++A + + +M   G   D + Y  L     KE K+E    ++ +++  G     
Sbjct: 454 TKAGKMEQALELLNEMANKGFNTDKM-YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQT 512

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  ++ GLC+ G    A   L  M   G   +   Y  +++ L  +G    A  +   
Sbjct: 513 VLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSR 572

Query: 246 MEVKDSFTYS 255
           +  +D  + S
Sbjct: 573 LCSRDVLSNS 582



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 34/176 (19%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P  +TFN +++  C+      A  +F+ + + G  P   TY+ +I GL KAG++  A
Sbjct: 403 DRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQA 462

Query: 65  RWILKE----------------------------------LGDSGHAPNAITYTTIMKCC 90
             +L E                                  L DSG +P  + Y T++   
Sbjct: 463 LELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGL 522

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
            RN K    +++L+ M   G   D   Y  +I      G  KEA + + ++ +  V
Sbjct: 523 CRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRLCSRDV 578



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 42/185 (22%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           GR  +A   +E     G +    +Y  L++ YC+ G LE A  ++  M         Y H
Sbjct: 110 GRPADAARVVEAC---GPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAH 166

Query: 189 TILIDGLCKAGNI--------------------------------KGARLHLE---YMNK 213
             LI  LC+ G +                                +G R  LE   +M  
Sbjct: 167 NPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRA 226

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G + N   YN I+D + ++G +D A  +  S+  +    ++  Y++++   C  +R   
Sbjct: 227 EGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVD 286

Query: 270 ASKLL 274
           A ++L
Sbjct: 287 ADEIL 291



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 7/164 (4%)

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+   N L+   C+ G+   A  ++   E  G E    T+  L+DG C+AG ++ AR  +
Sbjct: 95  DVPLANRLVRDLCRRGRPADAARVV---EACGPEATAATYGALVDGYCRAGLLEDARRVV 151

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M      S+  A+N ++  L + G++  A+ V + M  +    D  TY+ ++   CK 
Sbjct: 152 GGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKG 211

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +    A +L+      G          ++D +   G   +A+++
Sbjct: 212 RGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQAREL 255


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 2/279 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++G C+    D A ++ + + KHG  P  V+Y  L+ GLC +G+   AR +
Sbjct: 444 PDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREM 503

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +    +    PNAITY  +M    R  K     ++   M  KG+         +I +  +
Sbjct: 504 INVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQ 563

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ EA  Y+E+ +  G  +++V++ T+I+ +C+ G +EAA  +LD+M   G   D  T
Sbjct: 564 NQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVT 623

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L D L K G +  A   +  M   G D     Y  ++ R  + G++D  +N+ E M 
Sbjct: 624 YTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKML 683

Query: 248 VKDSF--TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +  F   Y+ ++  LC    L  A KLL   L++  ++
Sbjct: 684 KRQPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKV 722



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 142/284 (50%), Gaps = 5/284 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++ G C     ++AL +  GL   G  P+ V+Y  ++  LCK  ++   +
Sbjct: 301 IKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVK 360

Query: 66  WILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +++++  +S   P+ +TY T++    ++      L  L   + KG+  D  GY  ++ +
Sbjct: 361 CLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHS 420

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F + GR+ EA   +  M + G   D+V+Y  +++ +C+ G+++ A  +L +M K G + +
Sbjct: 421 FCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPN 480

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++T L++GLC +G    AR  +    +  +  N   Y  ++  L ++GK+  A ++  
Sbjct: 481 TVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTR 540

Query: 245 SMEVKDSFTYSS----MVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            M  K  F        ++ +LC+ +++  A K L  CL  G  I
Sbjct: 541 EMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAI 584



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 148/348 (42%), Gaps = 41/348 (11%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF---------------------- 41
            +L P   T+N +++ L K+ + D+AL   +  Q  GF                      
Sbjct: 370 SNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDE 429

Query: 42  -------------VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
                         P++VTY  ++ G C+ GR+  A+ IL+++   G  PN ++YT ++ 
Sbjct: 430 AKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLN 489

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
               + K     E+++  +   +T +   Y  V+    + G+L EA D   +MV  G   
Sbjct: 490 GLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFP 549

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
             V  N LI   C+  K+  A   L+E   +G   +    T +I G C+ G+++ A   L
Sbjct: 550 TPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVL 609

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           + M   G   +   Y  + D LGK G++D A  +   M  K       TY S++H   + 
Sbjct: 610 DDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQW 669

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            R+     LL   LK   +  ++    V++ L   G   EA+K+  K+
Sbjct: 670 GRVDDMLNLLEKMLKR--QPFRTVYNQVIEKLCDFGNLEEAEKLLGKV 715



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 5/304 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
              +  ML+ L K +    A R+ R + + G       +  ++    +AG+LR A  +L 
Sbjct: 200 PVVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLT 259

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +  +G  P+     T +    +  K +  L+ L  M+  G   D   Y ++I  +  + 
Sbjct: 260 LMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLN 319

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKYTH 188
           R+++A + +  + + G   D VSY T++   CKE K+E    L+++M        D+ T+
Sbjct: 320 RIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTY 379

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
             LI  L K G+   A   L+     GF  +   Y+ IV    + G++D A ++   M  
Sbjct: 380 NTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYS 439

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           +    D  TY+++V   C+  R+  A K+L    K G +    +  A+++GL HSG   E
Sbjct: 440 RGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLE 499

Query: 305 AKKI 308
           A+++
Sbjct: 500 AREM 503



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 53/292 (18%)

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTVIA 123
           W  ++   S H    + Y T++    + +  +    +L  M R+G     + FGY  V+ 
Sbjct: 189 WADRQWRYSHHP---VVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGY--VMV 243

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           ++ + G+L+ A   +  M   GV+  +   NT I +  K GKLE A   L+ M+  G + 
Sbjct: 244 SYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKP 303

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLE---------------------------------- 209
           D  T+  LI G C    I+ A   LE                                  
Sbjct: 304 DIVTYNSLIKGYCDLNRIEDA---LELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVK 360

Query: 210 -YMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
             M K+ ++SNL      YN ++  L K G  D A+   +  + K    D   YS++VH+
Sbjct: 361 CLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHS 420

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            C+  R+  A  L++     G         A+VDG    G   EAKKI  ++
Sbjct: 421 FCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQM 472



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 96/240 (40%), Gaps = 39/240 (16%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P     N+++  LC+N+    A +        G    +V +  +I G C+ G 
Sbjct: 542 MVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGD 601

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L ++  SG  P+A+TYT +     +  +     E++  M  KG       Y +
Sbjct: 602 MEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRS 661

Query: 121 VIAAFVKIGRLKEATDYMEQMVT---------------------------------DGVQ 147
           VI  + + GR+ +  + +E+M+                                     +
Sbjct: 662 VIHRYSQWGRVDDMLNLLEKMLKRQPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASK 721

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-----CDKYTHTILIDG-LCKAGNI 201
           +D  + + L+  Y K+G   +AY +   M ++        C+K +  +++DG L +A N+
Sbjct: 722 VDANTCHVLMESYLKKGVAISAYKVACRMFRRNLTPDLKLCEKVSKKLVLDGKLVEADNL 781


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 13/287 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P T T+N+++ G CKN   D   R FR ++      ++VTYN L+ GLC+AG++R AR
Sbjct: 215 VSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIAR 274

Query: 66  WILKELGD--SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            ++  +G    G  PN +TYTT+++     ++ +  L +L  M  +G   +   Y T++ 
Sbjct: 275 NLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVK 334

Query: 124 AFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
              +  +L +  D +E+M +D G   D  ++NT+I+L+C  G L+ A  + + M+K    
Sbjct: 335 GLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIP 394

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLE-------YMNKIGFDSNLEAYNCIVDRLGKDGK 235
            D  +++ LI  LC+ G+   A    +        ++K G      +YN I + L + GK
Sbjct: 395 ADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGK 454

Query: 236 IDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
              A  V   +     +D  +Y++++   CK     S  +LL+  L+
Sbjct: 455 TKKAERVIRQLMKRGTQDPQSYTTVIMGHCKEGAYESGYELLMWMLR 501



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 153/313 (48%), Gaps = 19/313 (6%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE-L 71
           FN ++    +      ++++F+ ++     P +VT+N L+  L K GR   A+ +  E L
Sbjct: 151 FNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEML 210

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           G  G +P+  TY  +++   +N     G      M+      D   Y T++    + G++
Sbjct: 211 GTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKV 270

Query: 132 KEATDYMEQMVT--DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           + A + +  M    +G+  ++V+Y TLI  YC + ++E A ++L+EM  +G + +  T+ 
Sbjct: 271 RIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYN 330

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
            L+ GLC+A  +   +  LE M   G F  +   +N I+      G +D A+ VFESM+ 
Sbjct: 331 TLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKK 390

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKL---------LLSCLKSGVRILKSAQKAVVDG 295
                DS +YS+++ +LC+      A +L         LLS  K G + L ++   + + 
Sbjct: 391 FRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLS--KFGSKPLAASYNPIFES 448

Query: 296 LRHSGCRREAKKI 308
           L   G  ++A+++
Sbjct: 449 LCEHGKTKKAERV 461



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 138/296 (46%), Gaps = 19/296 (6%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           C  L P   T+  ++ G C  +  + AL +   +   G  P ++TYN L+KGLC+A +L 
Sbjct: 284 CEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLD 343

Query: 63  TARWILKEL-GDSGHAPNAITYTTI--MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
             + +L+ +  D G +P+  T+ TI  + CC  N      L++  +MK+     D   Y 
Sbjct: 344 KMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGN--LDEALKVFESMKKFRIPADSASYS 401

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLD-------IVSYNTLINLYCKEGKLEAAYLL 172
           T+I +  + G    A    +++    + L          SYN +    C+ GK + A  +
Sbjct: 402 TLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERV 461

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           + ++ K+G + D  ++T +I G CK G  +     L +M +  F  ++E Y+ ++D   +
Sbjct: 462 IRQLMKRGTQ-DPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQ 520

Query: 233 DGKIDHAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             K   A    E M +K S+     T+ S++  L +      +S +++  L+  VR
Sbjct: 521 KDKPLLAKETLEKM-LKSSYQPKTSTWHSVLAKLLEKGCAHESSCVIVMMLEKNVR 575



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 143/308 (46%), Gaps = 17/308 (5%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH--GFVP-ELVTYNILIKGLCKAGRLRT 63
           TP   ++ IML  L + R  + A      ++KH  G V  E   +N LI+   +AG  + 
Sbjct: 109 TP--ESYFIMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKE 166

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-KRKGYTFDGFGYCTVI 122
           +  + + +     +P+ +T+ ++M    +  +  +  E+   M    G + D   Y  +I
Sbjct: 167 SMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLI 226

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--QG 180
             F K   + E   +  +M +     D+V+YNTL++  C+ GK+  A  L++ M K  +G
Sbjct: 227 RGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEG 286

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T LI G C    ++ A + LE M   G   N+  YN +V  L +  K+D   
Sbjct: 287 LNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMK 346

Query: 241 NVFESMEV-----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +V E M+       D+FT+++++H  C A  L  A K+  S  K   RI   A  A    
Sbjct: 347 DVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKK--FRI--PADSASYST 402

Query: 296 LRHSGCRR 303
           L  S C++
Sbjct: 403 LIRSLCQK 410



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 119/251 (47%), Gaps = 14/251 (5%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT-----Y 83
           ALR F+  Q+ GF     +Y I+++ L +   L  AR  L       H+   +      +
Sbjct: 94  ALRFFKWTQQKGFSHTPESYFIMLEILGRERNLNVARNFL--FSIEKHSKGTVKLEDRFF 151

Query: 84  TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV- 142
            ++++       +K  +++   MK    +     + ++++  +K GR   A +  ++M+ 
Sbjct: 152 NSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLG 211

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
           T GV  D  +YN LI  +CK   ++  +    EME    + D  T+  L+DGLC+AG ++
Sbjct: 212 TYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVR 271

Query: 203 GARLHLEYMNKI--GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSS 256
            AR  +  M K   G + N+  Y  ++       +++ A+ V E M  +    +  TY++
Sbjct: 272 IARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNT 331

Query: 257 MVHNLCKAKRL 267
           +V  LC+A +L
Sbjct: 332 LVKGLCEAHKL 342


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 40/317 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++N   +    D A+ +F  +Q  G +P+ VT+  +I  LC+ GR
Sbjct: 251 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 310

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-C 119
           L  A      + D G  P+   Y  +++ C  + +     E++S M  K     G  Y  
Sbjct: 311 LDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFS 370

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++I    K GR+ E  D M+ MV  G + ++V++N+L+  YC  G +E A+ LLD M   
Sbjct: 371 SIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASI 430

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E + Y +  L+DG C                                   K+G+ID A
Sbjct: 431 GIEPNCYIYGTLVDGYC-----------------------------------KNGRIDDA 455

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VF  M  K     S  YS ++H L +A+R  +A K+    ++SG  +       V+ G
Sbjct: 456 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 515

Query: 296 LRHSGCRREAKKIQSKI 312
           L  + C  EA  +  K+
Sbjct: 516 LCRNNCTDEANMLLEKL 532



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++++++GLCK++  D A R+   + + G  P  +TYN LI G   +G 
Sbjct: 109 MVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGM 168

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              +  + K++   G  P      + +   F++ +      I  +M  KG   D   Y T
Sbjct: 169 WNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 228

Query: 121 VIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           ++  +       L +  +    M+T G+  +   +N LIN Y + G ++ A L+ ++M+ 
Sbjct: 229 MLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 288

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D  T   +I  LC+ G +  A     +M  IG   +   Y C++      G++  
Sbjct: 289 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVK 348

Query: 239 AINVFESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           A  +   M  KD        +SS+++NLCK  R+     ++   +++G R
Sbjct: 349 AKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 398



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 145/303 (47%), Gaps = 6/303 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ G  K+   D A  +F  + + G +P+++  N +IK LCK   +  A  I++++ DSG
Sbjct: 54  LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 113

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            AP+  TY+ I+    +++       +L  M   G   +   Y ++I  +   G   E+ 
Sbjct: 114 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 173

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              +QM + GV   + + N+ I+   K G+   A  + D M  +G + D  +++ ++ G 
Sbjct: 174 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 233

Query: 196 CKAGNIKGARLH--LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
             A +   A +H     M   G   N   +N +++   + G +D A+ +FE M+    + 
Sbjct: 234 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 293

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           D+ T+++++ +LC+  RL  A       +  GV   ++    ++ G  + G   +AK++ 
Sbjct: 294 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 353

Query: 310 SKI 312
           S++
Sbjct: 354 SEM 356



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 135/317 (42%), Gaps = 7/317 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ ++N LCK         +   + + G  P +VT+N L++G C  G +  A  +
Sbjct: 364 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 423

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G  PN   Y T++    +N +    L +   M  KG       Y  ++    +
Sbjct: 424 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQ 483

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R   A     +M+  G  + I +Y  ++   C+    + A +LL+++     + D  T
Sbjct: 484 ARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIIT 543

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             I+I  + K G  + A+   + ++  G   N++ Y+ ++  L K+   + A N+F S+E
Sbjct: 544 FNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVE 603

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL--RHSGC 301
                 DS   + +V  L     +  AS   LS +      L+++  +++  L  R    
Sbjct: 604 KSGHASDSRLLNHIVRMLLNKAEVAKASN-YLSIIGENNLTLEASTISLLASLFSREGKY 662

Query: 302 RREAKKIQSKIRMAKIS 318
           R   K + + + MA ++
Sbjct: 663 REHIKLLPANMTMAVVA 679



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 76  HAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           H+P  I TY  ++ C  R  +  LGL I+  + + G   D F Y ++I  FVK G + +A
Sbjct: 9   HSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKA 67

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
                +M+  GV   I+  N++I   CK  +++ A  ++ +M   G   D +T++++IDG
Sbjct: 68  HCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDG 127

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKD 250
           LCK+  +  A   LE M + G   N   YN ++      G  + ++ VF+ M     +  
Sbjct: 128 LCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 187

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
               +S +H L K  R   A  +  S +  G +
Sbjct: 188 VDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPK 220



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++G CKN   D+AL +FR +   G  P  V Y+I++ GL +A R   A+
Sbjct: 432 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 491

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +  E+ +SG   +  TY  ++    RN    +  + LE L AM  K   FD   +  VI
Sbjct: 492 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK---FDIITFNIVI 548

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +A  K+GR +EA +  + + T G+  +I +Y+ +I    KE   E A  L   +EK G  
Sbjct: 549 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHA 608

Query: 183 CD 184
            D
Sbjct: 609 SD 610



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 80/165 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    T    T+ ++L GLC+N  TD A  +   L       +++T+NI+I  + K GR
Sbjct: 497 MIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 556

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ +   +   G  PN  TY+ ++    +   Y+    +  ++++ G+  D      
Sbjct: 557 RQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNH 616

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           ++   +    + +A++Y+  +  + + L+  + + L +L+ +EGK
Sbjct: 617 IVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGK 661


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 147/285 (51%), Gaps = 4/285 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TFNI+++GLCK      A  +   + K G    +VTYN L+ G     +
Sbjct: 265 MLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQ 324

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A ++   +   G  P+  +Y+ ++    + +     + +   M  K    +   Y +
Sbjct: 325 ENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNS 384

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I   +K GR+ +A D + +M   G   D+++Y++L++  CK  +++ A  L+ +++ QG
Sbjct: 385 LIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQG 444

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + + YT+TIL+DGLCK G +K A+   + +   G+  +++ YN +V+ L K+G  D A+
Sbjct: 445 IQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEAL 504

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++   ME    + D+ TY ++V  L +  +   A KLL   +  G
Sbjct: 505 SLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 135/271 (49%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T   ++ GLC N     AL     +   GF  + V+Y  LI GLCK G  R A  +
Sbjct: 132 PDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQV 191

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++      PN + Y TI+    +++      ++ S M  K    D   Y T+I   + 
Sbjct: 192 LRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLI 251

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GRLKEA     QM+   ++ D+ ++N L++  CKEG+++ A  +L  M KQG + +  T
Sbjct: 252 VGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVT 311

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG         A      M + G   ++++Y+ +++ L K   +D A+N+F+ M 
Sbjct: 312 YNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMH 371

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            K    ++ TY+S++  L K  R+  A  L+
Sbjct: 372 SKSMAPNTVTYNSLIDGLLKYGRISDAWDLV 402



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 143/299 (47%), Gaps = 4/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFNI++N  C   + + A  +   + K GF P+ VT   LIKGLC  G++R A 
Sbjct: 95  IQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREAL 154

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++   G   + ++Y T++    +  + +  L++L  +       +   Y T+I + 
Sbjct: 155 HFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSL 214

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   +  A+D   +M+   +  D+V+Y TLI      G+L+ A  L ++M  +  + D 
Sbjct: 215 CKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDV 274

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  IL+DGLCK G +K AR  L  M K G DSN+  YN ++D      + + A  VF +
Sbjct: 275 YTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNT 334

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M       D  +YS M++ LCK K +  A  L        +        +++DGL   G
Sbjct: 335 MARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYG 393



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 8/314 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++ LCK++   +A  +   +      P++VTY  LI G    GRL+ A 
Sbjct: 200 VQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAV 259

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+  T+  ++    +  + K    +L+ M ++G   +   Y +++  +
Sbjct: 260 GLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             + +  +AT     M   GV  D+ SY+ +IN  CK   ++ A  L  EM  +    + 
Sbjct: 320 FLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNT 379

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDGL K G I  A   +  M+  G  +++  Y+ ++D L K+ ++D AI +   
Sbjct: 380 VTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLIT- 438

Query: 246 MEVKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            ++KD       +TY+ +V  LCK  RL  A  +    L  G  +       +V+GL   
Sbjct: 439 -KIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKE 497

Query: 300 GCRREAKKIQSKIR 313
           G   EA  + SK+ 
Sbjct: 498 GLFDEALSLVSKME 511



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 127/288 (44%), Gaps = 41/288 (14%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L+ L K  +   A+   + ++     P+L T+NILI   C  G L  A  +L ++ 
Sbjct: 67  FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P+ +T TT++K                            G C         G+++
Sbjct: 127 KLGFHPDTVTITTLIK----------------------------GLCLN-------GKVR 151

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA  + + ++  G  LD VSY TLIN  CK G+  AA  +L +++    + +   +  +I
Sbjct: 152 EALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTII 211

Query: 193 DGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           D LCK    I  + L  E + K  F  ++  Y  ++      G++  A+ +F  M +K  
Sbjct: 212 DSLCKDKLVIHASDLCSEMIVKRIF-PDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNI 270

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             D +T++ +V  LCK   +  A  +L   +K GV        +++DG
Sbjct: 271 KPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDG 318


>gi|218191860|gb|EEC74287.1| hypothetical protein OsI_09537 [Oryza sativa Indica Group]
          Length = 689

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 39/308 (12%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +ALR+F  ++    VP+    + L+  L K+    TAR +  ++  +G A N   Y  ++
Sbjct: 220 DALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAML 279

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
             C +     L   +++ M   G   D F + TVIA + + G   EA    E+M   GV+
Sbjct: 280 HVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVK 339

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D+V++N+LI+  CKE +++ A  LL EM   G   D  T+T L+DG C+AG+++ A   
Sbjct: 340 ADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKL 399

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKI-----------------DHA-----INVF-- 243
              M  +G    +  YN I+ +L +DGK+                 DH      IN +  
Sbjct: 400 RGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCK 459

Query: 244 -----ESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
                 +++VK          D FTY ++VH  CKAK L  A + L   + +G     S 
Sbjct: 460 RGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSV 519

Query: 289 QKAVVDGL 296
              +VDGL
Sbjct: 520 LSWIVDGL 527



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 120/250 (48%), Gaps = 4/250 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++GLCK R    A ++ R +   G  P+ VTY  L+ G C+AG L  A  +  E+
Sbjct: 344 TWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEM 403

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   TY  I++    + K K    +L+ M  +    D     T+I A+ K G +
Sbjct: 404 EAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDM 463

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A     +M+  G+QLD  +Y  L++ +CK  +L+ A   L EM   GF  +    + +
Sbjct: 464 TSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWI 523

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +DGLC   N        + + K GF  +   Y  ++ RL K G ID A NVF  M+ K  
Sbjct: 524 VDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQGKGL 583

Query: 250 --DSFTYSSM 257
             D   Y+++
Sbjct: 584 EADCLVYATL 593



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 4/256 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN ++   C+      A+ +   ++  G   ++VT+N LI GLCK  R++ A  +L+E+
Sbjct: 309 SFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREM 368

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G AP+ +TYTT++    R    +  +++   M+  G       Y  ++    + G++
Sbjct: 369 AMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKM 428

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           KE    + +M    VQ D V+ NTLIN YCK G + +A  +   M + G + D++T+  L
Sbjct: 429 KEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKAL 488

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           + G CKA  +  A+  L  M   GF  N    + IVD L         + + + +  +  
Sbjct: 489 VHGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGF 548

Query: 250 --DSFTYSSMVHNLCK 263
             D   Y S++  LCK
Sbjct: 549 PPDKAVYRSLIRRLCK 564



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 111/252 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+  +++G C+    + A+++   ++  G +P + TYN +++ LC+ G+
Sbjct: 368 MAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGK 427

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++    +L E+ +     + +T  T++    +       L++   M   G   D F Y  
Sbjct: 428 MKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKA 487

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F K   L EA + + +M+  G   +    + +++  C +    A   + DE+ K+G
Sbjct: 488 LVHGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRG 547

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  DK  +  LI  LCK G I  A      M   G +++   Y  +       GK   A+
Sbjct: 548 FPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQGKGLEADCLVYATLACAYLTAGKPVAAL 607

Query: 241 NVFESMEVKDSF 252
           ++   M  K  +
Sbjct: 608 DILNEMAKKQLY 619



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 33/215 (15%)

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            L +   M+ +    D      ++ A  K      A    +QM   GV ++   YN +++
Sbjct: 221 ALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLH 280

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           +  K G    A  L+  M+  G   D+++   +I   C+ G      +  E M       
Sbjct: 281 VCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKG------MQYEAM------- 327

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
                 C+ +R+   G             VK D  T++S++H LCK +R+  AS+LL   
Sbjct: 328 ------CVRERMENQG-------------VKADVVTWNSLIHGLCKERRVKEASQLLREM 368

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             +GV         +VDG   +G   EA K++ ++
Sbjct: 369 AMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEM 403


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 150/287 (52%), Gaps = 6/287 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +++P   TFNI+++G  K+     +L++F+ +     +P ++TYN LI GLC  G+
Sbjct: 287 MVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGK 346

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++  +G  PN ITY +++    +N   K  L++  ++K +G       Y  
Sbjct: 347 INEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNM 406

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A+ K+G++ +     E+M  +G+  D+ +YN LI   C+ G +EAA  L D++  +G
Sbjct: 407 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKG 466

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T  IL++G C  G  + A + L+ M+K+G       YN ++    K+G +  A 
Sbjct: 467 LP-DLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAAT 525

Query: 241 NVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           N+   ME +     +  +Y+ ++    +  +L  A+ LL   L+ G+
Sbjct: 526 NMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGL 572



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 157/319 (49%), Gaps = 6/319 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK--- 57
           MI   + P   TFN+++N LCK    + A  +   ++ +G+ P +V+YN LI G CK   
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGG 273

Query: 58  AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
            G++  A  +LKE+ ++  +PN  T+  ++   +++      L++   M  +    +   
Sbjct: 274 NGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVIT 333

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y ++I      G++ EA    ++MV+ GVQ ++++Y++LIN +CK G ++ A  + D ++
Sbjct: 334 YNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVK 393

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            QG       + +LID  CK G I       E M + G   ++  YNC++  L ++G I+
Sbjct: 394 GQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE 453

Query: 238 HAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            A  +F+ +  K   D  T+  ++   C       A+ LL    K G++        ++ 
Sbjct: 454 AAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMK 513

Query: 295 GLRHSGCRREAKKIQSKIR 313
           G    G  + A  +++++ 
Sbjct: 514 GYCKEGNLKAATNMRTQME 532



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 10/276 (3%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +M+  L +NR  D    +++ + +    P + T+N++I  LCK G++  AR +++++   
Sbjct: 194 LMVALLKQNRSAD-VEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVY 252

Query: 75  GHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           G++PN ++Y T++    K     + YK    +L  M     + +   +  +I  F K   
Sbjct: 253 GYSPNVVSYNTLIDGYCKLGGNGKMYKAD-AVLKEMVENEVSPNLTTFNILIDGFWKDDN 311

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L  +    ++M+   V  ++++YN+LIN  C  GK+  A  + D+M   G + +  T+  
Sbjct: 312 LPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHS 371

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           LI+G CK G +K A    + +   G       YN ++D   K GKID    + E ME   
Sbjct: 372 LINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            V D  TY+ ++  LC+   + +A KL       G+
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL 467



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 109/203 (53%), Gaps = 4/203 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  +N++++  CK    D+   +   +++ G VP++ TYN LI GLC+ G +  A+ +
Sbjct: 399 PTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKL 458

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             +L + G  P+ +T+  +M+  C R    K  + +L  M + G       Y  ++  + 
Sbjct: 459 FDQLTNKG-LPDLVTFHILMEGYCSRGESRKAAM-LLKEMSKMGLKPRHLTYNIMMKGYC 516

Query: 127 KIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           K G LK AT+   QM  +  +++++ SYN L+  Y ++GKLE A +LL+EM ++G   ++
Sbjct: 517 KEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNR 576

Query: 186 YTHTILIDGLCKAGNIKGARLHL 208
            T+ I+ + +   G +     HL
Sbjct: 577 ITYEIVKEEMVDKGFVPDIEGHL 599



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 7/234 (2%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N+I    ++     N +++LG E        GY         ++ A +K  R  +     
Sbjct: 152 NSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLY 211

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK- 197
           ++M+   +Q ++ ++N +IN  CK GK+  A  ++++M+  G+  +  ++  LIDG CK 
Sbjct: 212 KEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKL 271

Query: 198 --AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDS 251
              G +  A   L+ M +     NL  +N ++D   KD  +  ++ VF+ M     + + 
Sbjct: 272 GGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNV 331

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            TY+S+++ LC   ++  A  +    + +GV+       ++++G   +G  +EA
Sbjct: 332 ITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEA 385



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 122/265 (46%), Gaps = 7/265 (2%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           L+  L K  R     ++ KE+      PN  T+  ++    +  K     +++  MK  G
Sbjct: 194 LMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253

Query: 111 YTFDGFGYCTVIAAFVKI---GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
           Y+ +   Y T+I  + K+   G++ +A   +++MV + V  ++ ++N LI+ + K+  L 
Sbjct: 254 YSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLP 313

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            +  +  EM  Q    +  T+  LI+GLC  G I  A    + M   G   NL  Y+ ++
Sbjct: 314 GSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLI 373

Query: 228 DRLGKDGKIDHAINVFESMEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +   K+G +  A+++F+S++ + +      Y+ ++   CK  ++     L     + G+ 
Sbjct: 374 NGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKI 308
                   ++ GL  +G    AKK+
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKL 458



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 7/181 (3%)

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G +L  +S   L+    K+ +      L  EM ++  + + +T  ++I+ LCK G +  A
Sbjct: 183 GYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKIDHAINVFESM---EVKDSFT-YSSM 257
           R  +E M   G+  N+ +YN ++D   +LG +GK+  A  V + M   EV  + T ++ +
Sbjct: 243 RDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNIL 302

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           +    K   LP + K+    L   V        ++++GL + G   EA  ++ K+  A +
Sbjct: 303 IDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGV 362

Query: 318 S 318
            
Sbjct: 363 Q 363


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 154/318 (48%), Gaps = 4/318 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L     T+N +++G CK    D A +M   +++    P ++T+N L+ GLCK  +++ A
Sbjct: 241 NLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEA 300

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +LKE+  +G  P+  TY+ +     R       +E+      KG   + +    ++  
Sbjct: 301 RSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNG 360

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G++++A + +++   +G+  D V YNT +N YC+ G +  A L ++ ME  G   +
Sbjct: 361 LCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPN 420

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T   LID  C    +  A   ++ M + G   ++E YN ++D  GK    D    + E
Sbjct: 421 SITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILE 480

Query: 245 SME---VKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            ME   VK +  +Y S+++ LCK  ++  A  +L   +  GV         ++DG    G
Sbjct: 481 QMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVG 540

Query: 301 CRREAKKIQSKIRMAKIS 318
             ++A +   ++  ++IS
Sbjct: 541 KVKDALRFFDEMMRSEIS 558



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 130/283 (45%), Gaps = 34/283 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MIC  + P    +N++++G C      +ALR F  + +    P LVTYN+LI GLCK G+
Sbjct: 517 MICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGK 576

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM----------KC-----CFRN-------RKY-- 96
           L  A   L ++  SGH+P+ ITY +++          KC       +N       R Y  
Sbjct: 577 LTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHP 636

Query: 97  ------KLGLEIL----SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                 K G+E++    + M +     D   Y  +I  + +IG  ++A    + M+  G+
Sbjct: 637 LISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI 696

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
             D ++YN+LI  + +EGKL     L++ M+ +       T+ IL+ G C   +  GA +
Sbjct: 697 HPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYV 756

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
               M +  F  N    N +   L ++G++     +   M VK
Sbjct: 757 WYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMNVK 799



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 3/298 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P + TFN +++  C  +  D A    + + + G  P + TYN LI G  K        
Sbjct: 417 LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCF 476

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL+++ + G  PN ++Y +++ C  ++ K      +L  M  +G   +   Y  +I   
Sbjct: 477 QILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGS 536

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +G++K+A  + ++M+   +   +V+YN LI+  CK+GKL  A   L ++   G   D 
Sbjct: 537 CMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDV 596

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG--KIDHAINVF 243
            T+  LI G   AGN+       E M  +G    +  Y+ ++    K+G   ++   N  
Sbjct: 597 ITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLYNEM 656

Query: 244 ESME-VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             M  + D   Y++M+H   +      A  L    L  G+   K    +++ G    G
Sbjct: 657 LQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREG 714



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 130/273 (47%), Gaps = 8/273 (2%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
            +     ++K G  P +  YN+LI GLC+  R+R A  +  E+ +     + +TY T++ 
Sbjct: 195 GMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLID 254

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              +  +     ++   MK K    +   + ++++   K+ ++KEA   +++M  +G   
Sbjct: 255 GYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMP 314

Query: 149 DIVSYNTLIN--LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           D  +Y+ L +  L C +G    A  L ++  ++G   + YT +IL++GLCK G ++ A  
Sbjct: 315 DGYTYSILFDGLLRCDDGN--GAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEE 372

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLC 262
            L+   + G  ++   YN  V+   + G ++ AI   E ME      +S T++S++   C
Sbjct: 373 ILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFC 432

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             K +  A + +    + GV         ++DG
Sbjct: 433 DMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDG 465



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 143/273 (52%), Gaps = 4/273 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           +++L+  CK++    A+ ++  +++ G +P LV+ ++L   L    +      +  E+ +
Sbjct: 110 DMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIEN 169

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           SG   +   Y   ++   + +  K+G+E L +M+++G   + F Y  +I    +  R+++
Sbjct: 170 SGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRD 229

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A    ++M    +   IV+YNTLI+ YCK G+L+AA+ + + M+++    +  T   L+ 
Sbjct: 230 AEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLS 289

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           GLCK   +K AR  L+ M   GF  +   Y+ + D L +    + A+ ++E    K    
Sbjct: 290 GLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRI 349

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +++T S +++ LCK  ++  A ++L    ++G+
Sbjct: 350 NNYTGSILLNGLCKQGKVEKAEEILKKFTENGL 382


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 159/327 (48%), Gaps = 15/327 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP T TFNI++ G C N   D+  R+F  L + G  P++VTYN L+ GLC+AG++  A 
Sbjct: 216 VTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAY 275

Query: 66  WILKELGDSG--HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            ++K +G       PN +TYTT+++     R+ +  L +   M  +G   +   Y T+I 
Sbjct: 276 NVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIK 335

Query: 124 AFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
              +  + ++  D +E    DG    D  ++NTL++ +C  G L+ A  + + M +   +
Sbjct: 336 GLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQ 395

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYM--NKI-----GFDSNLEAYNCIVDRLGKDGK 235
            D  T++ L+  LC+ G+ + A   L+ +   KI     G    + AYN I   L + GK
Sbjct: 396 PDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGK 455

Query: 236 IDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
              A   F  +     +D  +Y +++   CK     S  +LL+  L+          +++
Sbjct: 456 TKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESL 515

Query: 293 VDGLRHSGCRREAKKIQSKIRMAKISH 319
           ++GL H    +    +QS  +M + SH
Sbjct: 516 INGLLHMD--KPLLALQSLEKMLRSSH 540



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 148/310 (47%), Gaps = 15/310 (4%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE-L 71
           FN ++    +      ++++F  ++ HG  P +VT+N L+  L K GR   A+ +  E L
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEML 211

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  T+  +++    N     G  I + + R G   D   Y T++    + G++
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKV 271

Query: 132 KEATDYMEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             A + ++ M    V L  ++V+Y TLI  YC + ++E A  + +EM  QG + +  T+ 
Sbjct: 272 TVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYN 331

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESM-E 247
            LI GLC+A   +  +  LE     G F  +   +N ++      G +D A+ VFE M E
Sbjct: 332 TLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSE 391

Query: 248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK-------SGVRILKSAQKAVVDGLR 297
           +K   DS TYS++V +LC+      A  LL   L+        G + L +A   +   L 
Sbjct: 392 LKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLC 451

Query: 298 HSGCRREAKK 307
            +G  ++A+K
Sbjct: 452 ETGKTKKAEK 461



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 128/291 (43%), Gaps = 13/291 (4%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P   T+  ++ G C  R  + AL +F  +   G     +TYN LIKGLC+A +    
Sbjct: 287 DLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKI 346

Query: 65  RWILK-ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           + IL+   GD   +P+  T+ T+M C          L++   M       D   Y  ++ 
Sbjct: 347 KDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVR 406

Query: 124 AFVKIGRLKEATDYMEQMVT-------DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +  + G  ++A D +++++        DG +  + +YN +    C+ GK + A     ++
Sbjct: 407 SLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQL 466

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            ++G + D  ++  LI G CK G  +     L  M +  F  + E Y  +++ L    K 
Sbjct: 467 MRRGTQ-DPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKP 525

Query: 237 DHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             A+   E M       +S T+ S++  L +  R   ++ L+   L   +R
Sbjct: 526 LLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRASESASLIQLMLDKNIR 576



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 125/261 (47%), Gaps = 10/261 (3%)

Query: 24  RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP---NA 80
           R T  AL+ F   Q+ G+     +Y  +++ L +   L TAR  L  +           A
Sbjct: 90  RDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEA 149

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD-YME 139
             + ++M+   R   ++  +++ + MK  G +     + +++   +K GR   A   Y E
Sbjct: 150 RFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDE 209

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
            + T GV  D  ++N LI  +C  G ++  + + +++ + G E D  T+  L+DGLC+AG
Sbjct: 210 MLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAG 269

Query: 200 NIKGARLHLEYMNK--IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
            +  A   ++ M K  +  + N+  Y  ++       +I+ A+ VFE M  +    ++ T
Sbjct: 270 KVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNIT 329

Query: 254 YSSMVHNLCKAKRLPSASKLL 274
           Y++++  LC+A++      +L
Sbjct: 330 YNTLIKGLCEARKFEKIKDIL 350



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 38/259 (14%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G  +P T TFN +++  C     D+AL++F  + +    P+  TY+ L++ LC+ G    
Sbjct: 357 GTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEK 416

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL---GLEILSAMKRKGYTFDGFGYCT 120
           A  +L +L +                    RK  L   G + L A            Y  
Sbjct: 417 AEDLLDKLLE--------------------RKILLSGDGCKPLVA-----------AYNP 445

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +     + G+ K+A     Q++  G Q D  SY TLI  +CKEG  E+ Y LL  M ++ 
Sbjct: 446 IFKYLCETGKTKKAEKAFRQLMRRGTQ-DPPSYKTLIMGHCKEGTFESGYELLVLMLRKD 504

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D  T+  LI+GL        A   LE M +     N   ++ I+ +L + G+   + 
Sbjct: 505 FXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRASESA 564

Query: 241 NVFESM---EVKDSFTYSS 256
           ++ + M    ++ + ++S+
Sbjct: 565 SLIQLMLDKNIRQNLSFST 583


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 152/325 (46%), Gaps = 34/325 (10%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG------------------------- 40
           + P   T+NI+L  LCKN   D A ++   +   G                         
Sbjct: 177 MEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR 236

Query: 41  -----FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
                F P +  YN LI G+CK      A  +L E+ + G  PN I+YTTI+        
Sbjct: 237 ELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGN 296

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            +L L +L+ M  +G + +   + ++I  F   G   EA D+ ++M+ +GV  ++V+YN 
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNA 356

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L++  C +  L  A  + ++ME  G   +  T++ LIDG  KAG++ GA     +M   G
Sbjct: 357 LMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHG 416

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              N+ AY C+VD L ++   + A  + E+M+V+    ++ T+++ +  LC + R+  A 
Sbjct: 417 CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAI 476

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGL 296
           K+      SG     +    ++D L
Sbjct: 477 KVFDQMGNSGCFPNTTTYNELLDSL 501



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 115/230 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    +  M++ LC+N   + A  +   +Q     P  VT+N  IKGLC +GR
Sbjct: 412 MITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGR 471

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++G+SG  PN  TY  ++    ++R++     ++  M+ +G   +   Y T
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNT 531

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +   G L EA + + +MV  G + D ++ N +I+ YCK+GK+  A  L+D +    
Sbjct: 532 IIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
           +  D   +T LI G+C    ++ A ++L  M   G   N+  +N +V  L
Sbjct: 592 WHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 9/279 (3%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           ++ AL+ F  +Q     P +  YN ++  L    R +    I   +   G  PN  TY  
Sbjct: 127 SEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNI 186

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++K   +N +     ++L  M  KG   D   Y T+I++  K+G++KEA + +    T  
Sbjct: 187 LLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE-LAMSFTPS 245

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V +    YN LIN  CKE   E A+ LLDEM  +G + +  ++T +I+ L  AGN++ + 
Sbjct: 246 VPV----YNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSL 301

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNL 261
             L  M   G   NL  +  ++      G    A++ ++ M     V +   Y++++H L
Sbjct: 302 AVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGL 361

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           C  + L  A  +      +G         A++DG   +G
Sbjct: 362 CSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAG 400



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 135/308 (43%), Gaps = 8/308 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P    +N +++GLC  R   +A+ +F  ++ +G  P + TY+ LI G  KAG 
Sbjct: 342 MIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD 401

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +   +   G  PN + YT ++    RN  +     ++  M+ +    +   + T
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNT 461

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I      GR+  A    +QM   G   +  +YN L++   K+ +   A+ L+ +ME +G
Sbjct: 462 FIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRG 521

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+  +I G C AG +  A   L  M   G   +    N ++D   K GK++ AI
Sbjct: 522 IELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI 581

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV--- 293
            + + +       D   Y+S++  +C    +  A   L   L  G+    +    +V   
Sbjct: 582 QLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641

Query: 294 -DGLRHSG 300
              + HSG
Sbjct: 642 FSNMGHSG 649



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 140/350 (40%), Gaps = 39/350 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP    +N ++NG+CK    + A ++   +   G  P +++Y  +I  L  AG +  + 
Sbjct: 242 FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSL 301

Query: 66  WILKEL----------------------GDS-------------GHAPNAITYTTIMKCC 90
            +L ++                      G S             G  PN + Y  +M   
Sbjct: 302 AVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGL 361

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
              R     + + + M+  G   +   Y  +I  + K G L  A++    M+T G   ++
Sbjct: 362 CSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNV 421

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V+Y  ++++ C+      AY L++ M+ +    +  T    I GLC +G +  A    + 
Sbjct: 422 VAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQ 481

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M   G   N   YN ++D L KD +   A  + + ME +    +  TY+++++  C A  
Sbjct: 482 MGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGM 541

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
           L  A +LL   +  G +        V+D     G    A ++  ++   K
Sbjct: 542 LGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 2/176 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N +L+ L K+R    A  + + ++  G    LVTYN +I G C AG L  A  +
Sbjct: 489 PNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALEL 548

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G  P+AIT   ++    +  K  + ++++  +    +  D   Y ++I+    
Sbjct: 549 LGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICT 608

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLI-NLYCKEGKLEAAYLLLDEMEKQGFE 182
              ++EA  Y+ +M+++G+  ++ ++N L+ +L+   G    A   LD +   GFE
Sbjct: 609 HIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGH-SGAVQFLDAVLGSGFE 663



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 13/230 (5%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P  +TY  +++     R+      +L  MK +G +     + +VI ++ + G  ++A 
Sbjct: 74  HTP--LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQAL 131

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
               +M    V+  +  YN +++    E + +    +   M+K G E + +T+ IL+  L
Sbjct: 132 KTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKAL 191

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT-- 253
           CK   + GA   L  M+  G D +  +Y  ++  L K GK+       E+ E+  SFT  
Sbjct: 192 CKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVK------EARELAMSFTPS 245

Query: 254 ---YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
              Y+++++ +CK      A +LL   +  G+     +   +++ L  +G
Sbjct: 246 VPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAG 295



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T NI+++  CK    + A+++   L    + P+++ Y  LI G+C    
Sbjct: 552 MVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIG 611

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
           +  A   L+ +   G +PN  T+  +++  F N  +   ++ L A+   G+
Sbjct: 612 VEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSGF 662



 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 4/162 (2%)

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++Y  +I     E +++    LL +M+ +G  C +     +I    +AG+ + A      
Sbjct: 77  LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYR 136

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M        ++ YN I+D L  + +      ++ +M+      + FTY+ ++  LCK  R
Sbjct: 137 MQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNR 196

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +  A KLL+     G    + +   ++  L   G  +EA+++
Sbjct: 197 VDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL 238


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 40/317 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++N   +    D A+ +F  +Q  G +P+ VT+  +I  LC+ GR
Sbjct: 413 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 472

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-C 119
           L  A      + D G  P+   Y  +++ C  + +     E++S M  K     G  Y  
Sbjct: 473 LDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFS 532

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++I    K GR+ E  D M+ MV  G + ++V++N+L+  YC  G +E A+ LLD M   
Sbjct: 533 SIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASI 592

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E + Y +  L+DG C                                   K+G+ID A
Sbjct: 593 GIEPNCYIYGTLVDGYC-----------------------------------KNGRIDDA 617

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VF  M  K     S  YS ++H L +A+R  +A K+    ++SG  +       V+ G
Sbjct: 618 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 677

Query: 296 LRHSGCRREAKKIQSKI 312
           L  + C  EA  +  K+
Sbjct: 678 LCRNNCTDEANMLLEKL 694



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++++++GLCK++  D A R+   + + G  P  +TYN LI G   +G 
Sbjct: 271 MVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGM 330

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              +  + K++   G  P      + +   F++ +      I  +M  KG   D   Y T
Sbjct: 331 WNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 390

Query: 121 VIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           ++  +       L +  +    M+T G+  +   +N LIN Y + G ++ A L+ ++M+ 
Sbjct: 391 MLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 450

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D  T   +I  LC+ G +  A     +M  IG   +   Y C++      G++  
Sbjct: 451 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVK 510

Query: 239 AINVFESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           A  +   M  KD        +SS+++NLCK  R+     ++   +++G R
Sbjct: 511 AKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 560



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 145/303 (47%), Gaps = 6/303 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ G  K+   D A  +F  + + G +P+++  N +IK LCK   +  A  I++++ DSG
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 275

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            AP+  TY+ I+    +++       +L  M   G   +   Y ++I  +   G   E+ 
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 335

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              +QM + GV   + + N+ I+   K G+   A  + D M  +G + D  +++ ++ G 
Sbjct: 336 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 395

Query: 196 CKAGNIKGARLH--LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
             A +   A +H     M   G   N   +N +++   + G +D A+ +FE M+    + 
Sbjct: 396 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 455

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           D+ T+++++ +LC+  RL  A       +  GV   ++    ++ G  + G   +AK++ 
Sbjct: 456 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 515

Query: 310 SKI 312
           S++
Sbjct: 516 SEM 518



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ ++N LCK         +   + + G  P +VT+N L++G C  G +  A  
Sbjct: 525 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 584

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +   G  PN   Y T++    +N +    L +   M  KG       Y  ++    
Sbjct: 585 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLF 644

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  R   A     +M+  G  + I +Y  ++   C+    + A +LL+++     + D  
Sbjct: 645 QARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII 704

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  I+I  + K G  + A+   + ++  G   N++ Y+ ++  L K+   + A N+F S+
Sbjct: 705 TFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISV 764

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           E      DS   + +V  L     +  AS  L
Sbjct: 765 EKSGHASDSRLLNHIVRMLLNKAEVAKASNYL 796



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 62  RTARWILKELGDSGHAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           R  RW         H+P  I TY  ++ C  R  +  LGL I+  + + G   D F Y +
Sbjct: 162 RMDRWACPR-----HSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-S 215

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  FVK G + +A     +M+  GV   I+  N++I   CK  +++ A  ++ +M   G
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 275

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T++++IDGLCK+  +  A   LE M + G   N   YN ++      G  + ++
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 335

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            VF+ M     +      +S +H L K  R   A  +  S +  G +
Sbjct: 336 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPK 382



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 6/183 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++G CKN   D+AL +FR +   G  P  V Y+I++ GL +A R   A+
Sbjct: 594 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 653

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +  E+ +SG   +  TY  ++    RN    +  + LE L AM  K   FD   +  VI
Sbjct: 654 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK---FDIITFNIVI 710

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +A  K+GR +EA +  + + T G+  +I +Y+ +I    KE   E A  L   +EK G  
Sbjct: 711 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHA 770

Query: 183 CDK 185
            D 
Sbjct: 771 SDS 773



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 80/165 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    T    T+ ++L GLC+N  TD A  +   L       +++T+NI+I  + K GR
Sbjct: 659 MIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 718

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ +   +   G  PN  TY+ ++    +   Y+    +  ++++ G+  D      
Sbjct: 719 RQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNH 778

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           ++   +    + +A++Y+  +  + + L+  + + L +L+ +EGK
Sbjct: 779 IVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGK 823


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 40/317 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++N   +    D A+ +F  +Q  G +P+ VT+  +I  LC+ GR
Sbjct: 414 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 473

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-C 119
           L  A      + D G  P+   Y  +++ C  + +     E++S M  K     G  Y  
Sbjct: 474 LDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFS 533

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++I    K GR+ E  D M+ MV  G + ++V++N+L+  YC  G +E A+ LLD M   
Sbjct: 534 SIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASI 593

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E + Y +  L+DG C                                   K+G+ID A
Sbjct: 594 GIEPNCYIYGTLVDGYC-----------------------------------KNGRIDDA 618

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VF  M  K     S  YS ++H L +A+R  +A K+    ++SG  +       V+ G
Sbjct: 619 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 678

Query: 296 LRHSGCRREAKKIQSKI 312
           L  + C  EA  +  K+
Sbjct: 679 LCRNNCTDEANMLLEKL 695



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 135/313 (43%), Gaps = 43/313 (13%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N ++  LCK +  D A  + + +   G  P+L TY+++I GLCK+  +  A  +L+++ +
Sbjct: 249 NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 308

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           +G  PN+ITY +++     +  +   + +   M   G         + I A  K GR  E
Sbjct: 309 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 368

Query: 134 ATDYMEQMVTDGVQLDIVSYNT-------------------------------------- 155
           A    + MV  G + DI+SY+T                                      
Sbjct: 369 AKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNI 428

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LIN Y + G ++ A L+ ++M+ +G   D  T   +I  LC+ G +  A     +M  IG
Sbjct: 429 LINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG 488

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT-----YSSMVHNLCKAKRLPSA 270
              +   Y C++      G++  A  +   M  KD        +SS+++NLCK  R+   
Sbjct: 489 VPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEG 548

Query: 271 SKLLLSCLKSGVR 283
             ++   +++G R
Sbjct: 549 KDIMDMMVQTGQR 561



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 141/304 (46%), Gaps = 7/304 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ G  K+   D A  +F  + + G +P+++  N +IK LCK   +  A  I++++ DSG
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 275

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            AP+  TY+ I+    +++       +L  M   G   +   Y ++I  +   G   E+ 
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 335

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              +QM + GV   + + N+ I+   K G+   A  + D M  +G + D  +++     +
Sbjct: 336 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWV 395

Query: 196 CKA-GNIKGARLH--LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
           C     +     H     M   G   N   +N +++   + G +D A+ +FE M+    +
Sbjct: 396 CYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI 455

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D+ T+++++ +LC+  RL  A       +  GV   ++    ++ G  + G   +AK++
Sbjct: 456 PDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKEL 515

Query: 309 QSKI 312
            S++
Sbjct: 516 ISEM 519



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ ++N LCK         +   + + G  P +VT+N L++G C  G +  A  
Sbjct: 526 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 585

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +   G  PN   Y T++    +N +    L +   M  KG       Y  ++    
Sbjct: 586 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLF 645

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  R   A     +M+  G  + I +Y  ++   C+    + A +LL+++     + D  
Sbjct: 646 QARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII 705

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  I+I  + K G  + A+   + ++  G   N++ Y+ ++  L K+   + A N+F S+
Sbjct: 706 TFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISV 765

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           E      DS   + +V  L     +  AS  L
Sbjct: 766 EKSGHASDSRLLNHIVRMLLNKAEVAKASNYL 797



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 62  RTARWILKELGDSGHAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           R  RW         H+P  I TY  ++ C  R  +  LGL I+  + + G   D F Y +
Sbjct: 162 RMDRWACPR-----HSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-S 215

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  FVK G + +A     +M+  GV   I+  N++I   CK  +++ A  ++ +M   G
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 275

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T++++IDGLCK+  +  A   LE M + G   N   YN ++      G  + ++
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 335

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            VF+ M     +      +S +H L K  R   A  +  S +  G +
Sbjct: 336 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPK 382



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 6/183 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++G CKN   D+AL +FR +   G  P  V Y+I++ GL +A R   A+
Sbjct: 595 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 654

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +  E+ +SG   +  TY  ++    RN    +  + LE L AM  K   FD   +  VI
Sbjct: 655 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK---FDIITFNIVI 711

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +A  K+GR +EA +  + + T G+  +I +Y+ +I    KE   E A  L   +EK G  
Sbjct: 712 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHA 771

Query: 183 CDK 185
            D 
Sbjct: 772 SDS 774



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 80/165 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    T    T+ ++L GLC+N  TD A  +   L       +++T+NI+I  + K GR
Sbjct: 660 MIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 719

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ +   +   G  PN  TY+ ++    +   Y+    +  ++++ G+  D      
Sbjct: 720 RQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNH 779

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           ++   +    + +A++Y+  +  + + L+  + + L +L+ +EGK
Sbjct: 780 IVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGK 824


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 155/311 (49%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++G CK    D+AL +   + + G    +VTY +L+ GLCK G++  A 
Sbjct: 330 MKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAE 389

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +  +G   N + YTT++   F  +  +  L +LS MK KG   D   Y  +I   
Sbjct: 390 DVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGL 449

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             + +L EA   + +M   G++ + V Y  +++   K  K   A  LL +M   GF  + 
Sbjct: 450 CNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNI 509

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+DGLCKAG+I  A  H   M  +G + N++AY  +VD L K+G++D A+ + + 
Sbjct: 510 VTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDE 569

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D+   +S++    K   L  A  L    + SG+++        V G  +   
Sbjct: 570 MIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNM 629

Query: 302 RREAKKIQSKI 312
            +EA+++ S++
Sbjct: 630 IQEAREVLSEM 640



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 134/272 (49%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   TFNIM++ LCK      A  +   ++  G  P++VTYN LI G  K G L     
Sbjct: 191 APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEK 250

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E+   G  P+ +TY  ++ C  +  + +      + MKR+G   +   + T + AF 
Sbjct: 251 LVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFC 310

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G ++EA     QM   G++ + V+Y  L++  CK G+L+ A +L +EM +QG   +  
Sbjct: 311 KNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVV 370

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T+L+DGLCK G +  A      M + G  +N   Y  ++         + A+++   M
Sbjct: 371 TYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEM 430

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           + K    D   Y +++  LC  ++L  A  LL
Sbjct: 431 KDKGMELDVSLYGALIWGLCNLQKLDEAKSLL 462



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 4/307 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF+  ++  CKN     A+++F  ++  G  P  VTY  L+ G CKAGRL  A  +  
Sbjct: 299 VVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTN 358

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G   N +TYT ++    +  K     ++   M+R G   +   Y T+I       
Sbjct: 359 EMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYK 418

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             + A   + +M   G++LD+  Y  LI   C   KL+ A  LL++M++ G + +   +T
Sbjct: 419 NSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYT 478

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            ++D   KA     A   L+ M   GF  N+  Y  +VD L K G ID AI+ F  M   
Sbjct: 479 NIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDL 538

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               +   Y+++V  LCK  RL  A  LL   +  G+ +      +++DG    G  ++A
Sbjct: 539 GLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDA 598

Query: 306 KKIQSKI 312
             +++K+
Sbjct: 599 FALKAKM 605



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 35/270 (12%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G    + ++ AL +   ++  G   ++  Y  LI GLC   +L  A+ +L ++ 
Sbjct: 407 YTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMD 466

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  PN + YT IM  CF+ RK    + +L  M   G+  +   YC ++    K G + 
Sbjct: 467 ECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSID 526

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA  +  +MV  G++ ++ +Y  L++  CK G+L+ A LLLDEM  +G   D    T L+
Sbjct: 527 EAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLM 586

Query: 193 DGLCKAGN-----------------------------------IKGARLHLEYMNKIGFD 217
           DG  K GN                                   I+ AR  L  M + G  
Sbjct: 587 DGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGIT 646

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +   YNC++++  K G ++ A  +   ME
Sbjct: 647 PDAVVYNCLINKCQKLGNMEEAAILQNEME 676



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 144/303 (47%), Gaps = 4/303 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +++G  K    +   ++   ++  G  P++VTYN L+   CK GR+  A  
Sbjct: 226 SPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYS 285

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              E+   G   N +T++T +    +N   +  +++ + M+ KG   +   Y  ++    
Sbjct: 286 YFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTC 345

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GRL +A     +MV  GV L++V+Y  L++  CKEGK+  A  +   ME+ G   ++ 
Sbjct: 346 KAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANEL 405

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +T LI G     N + A   L  M   G + ++  Y  ++  L    K+D A ++   M
Sbjct: 406 LYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKM 465

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +      ++  Y++++    KA++   A  LL   + SG R       A+VDGL  +G  
Sbjct: 466 DECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSI 525

Query: 303 REA 305
            EA
Sbjct: 526 DEA 528



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 85/171 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK    D A+  F  +   G  P +  Y  L+ GLCK GRL  A  +
Sbjct: 507 PNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLL 566

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+ D G + + +  T++M    +    +    + + M   G   D +GY   +  F  
Sbjct: 567 LDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCN 626

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           +  ++EA + + +M+ +G+  D V YN LIN   K G +E A +L +EME 
Sbjct: 627 LNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMES 677



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+++     G L +A   + ++    V  +  + N ++    +E   E A+ L +++   
Sbjct: 133 TLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQLPAP 192

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                 +T  I+ID LCK G++  AR  L  M  IG   ++  YN ++D  GK G+++  
Sbjct: 193 NV----FTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEV 248

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M       D  TY+++V+  CK  R+  A        + GV          VD 
Sbjct: 249 EKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDA 308

Query: 296 LRHSGCRREAKKIQSKIRM 314
              +G  REA K+ +++RM
Sbjct: 309 FCKNGMVREAMKLFAQMRM 327


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 40/317 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++N   +    D A+ +F  +Q  G +P+ VT+  +I  LC+ GR
Sbjct: 337 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 396

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-C 119
           L  A      + D G  P+   Y  +++ C  + +     E++S M  K     G  Y  
Sbjct: 397 LDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFS 456

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++I    K GR+ E  D M+ MV  G + ++V++N+L+  YC  G +E A+ LLD M   
Sbjct: 457 SIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASI 516

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E + Y +  L+DG C                                   K+G+ID A
Sbjct: 517 GIEPNCYIYGTLVDGYC-----------------------------------KNGRIDDA 541

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VF  M  K     S  YS ++H L +A+R  +A K+    ++SG  +       V+ G
Sbjct: 542 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 601

Query: 296 LRHSGCRREAKKIQSKI 312
           L  + C  EA  +  K+
Sbjct: 602 LCRNNCTDEANMLLEKL 618



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++++++GLCK++  D A R+   + + G  P  +TYN LI G   +G 
Sbjct: 195 MVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGM 254

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              +  + K++   G  P      + +   F++ +      I  +M  KG   D   Y T
Sbjct: 255 WNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 314

Query: 121 VIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           ++  +       L +  +    M+T G+  +   +N LIN Y + G ++ A L+ ++M+ 
Sbjct: 315 MLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 374

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D  T   +I  LC+ G +  A     +M  IG   +   Y C++      G++  
Sbjct: 375 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVK 434

Query: 239 AINVFESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           A  +   M  KD        +SS+++NLCK  R+     ++   +++G R
Sbjct: 435 AKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 484



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 145/303 (47%), Gaps = 6/303 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ G  K+   D A  +F  + + G +P+++  N +IK LCK   +  A  I++++ DSG
Sbjct: 140 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 199

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            AP+  TY+ I+    +++       +L  M   G   +   Y ++I  +   G   E+ 
Sbjct: 200 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 259

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              +QM + GV   + + N+ I+   K G+   A  + D M  +G + D  +++ ++ G 
Sbjct: 260 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 319

Query: 196 CKAGNIKGARLH--LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
             A +   A +H     M   G   N   +N +++   + G +D A+ +FE M+    + 
Sbjct: 320 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 379

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           D+ T+++++ +LC+  RL  A       +  GV   ++    ++ G  + G   +AK++ 
Sbjct: 380 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 439

Query: 310 SKI 312
           S++
Sbjct: 440 SEM 442



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ ++N LCK         +   + + G  P +VT+N L++G C  G +  A  
Sbjct: 449 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 508

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +   G  PN   Y T++    +N +    L +   M  KG       Y  ++    
Sbjct: 509 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLF 568

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  R   A     +M+  G  + I +Y  ++   C+    + A +LL+++     + D  
Sbjct: 569 QARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII 628

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  I+I  + K G  + A+   + ++  G   N++ Y+ ++  L K+   + A N+F S+
Sbjct: 629 TFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISV 688

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           E      DS   + +V  L     +  AS  L
Sbjct: 689 EKSGHASDSRLLNHIVRMLLNKAEVAKASNYL 720



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 62  RTARWILKELGDSGHAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           R  RW         H+P  I TY  ++ C  R  +  LGL I+  + + G   D F Y +
Sbjct: 86  RMDRWACPR-----HSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-S 139

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  FVK G + +A     +M+  GV   I+  N++I   CK  +++ A  ++ +M   G
Sbjct: 140 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 199

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T++++IDGLCK+  +  A   LE M + G   N   YN ++      G  + ++
Sbjct: 200 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 259

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            VF+ M     +      +S +H L K  R   A  +  S +  G +
Sbjct: 260 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPK 306



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 6/183 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++G CKN   D+AL +FR +   G  P  V Y+I++ GL +A R   A+
Sbjct: 518 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 577

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +  E+ +SG   +  TY  ++    RN    +  + LE L AM  K   FD   +  VI
Sbjct: 578 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK---FDIITFNIVI 634

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +A  K+GR +EA +  + + T G+  +I +Y+ +I    KE   E A  L   +EK G  
Sbjct: 635 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHA 694

Query: 183 CDK 185
            D 
Sbjct: 695 SDS 697



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 82/170 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    T    T+ ++L GLC+N  TD A  +   L       +++T+NI+I  + K GR
Sbjct: 583 MIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 642

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ +   +   G  PN  TY+ ++    +   Y+    +  ++++ G+  D      
Sbjct: 643 RQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNH 702

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           ++   +    + +A++Y+  +  + + L+  + + L +L+ +EG ++  +
Sbjct: 703 IVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGMIKGLF 752


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 40/317 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++N   +    D A+ +F  +Q  G +P+ VT+  +I  LC+ GR
Sbjct: 393 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 452

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-C 119
           L  A      + D G  P+   Y  +++ C  + +     E++S M  K     G  Y  
Sbjct: 453 LDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFS 512

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++I    K GR+ E  D M+ MV  G + ++V++N+L+  YC  G +E A+ LLD M   
Sbjct: 513 SIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASI 572

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E + Y +  L+DG C                                   K+G+ID A
Sbjct: 573 GIEPNCYIYGTLVDGYC-----------------------------------KNGRIDDA 597

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VF  M  K     S  YS ++H L +A+R  +A K+    ++SG  +       V+ G
Sbjct: 598 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGG 657

Query: 296 LRHSGCRREAKKIQSKI 312
           L  + C  EA  +  K+
Sbjct: 658 LCRNNCTDEANMLLEKL 674



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++++++GLCK++  D A R+   + + G  P  +TYN LI G   +G 
Sbjct: 251 MVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGM 310

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              +  + K++   G  P      + +   F++ +      I  +M  KG   D   Y T
Sbjct: 311 WNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 370

Query: 121 VIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           ++  +       L +  +    M+T G+  +   +N LIN Y + G ++ A L+ ++M+ 
Sbjct: 371 MLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 430

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D  T   +I  LC+ G +  A     +M  IG   +   Y C++      G++  
Sbjct: 431 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVK 490

Query: 239 AINVFESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           A  +   M  KD        +SS+++NLCK  R+     ++   +++G R
Sbjct: 491 AKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 540



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 145/303 (47%), Gaps = 6/303 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ G  K+   D A  +F  + + G +P+++  N +IK LCK   +  A  I++++ DSG
Sbjct: 196 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 255

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            AP+  TY+ I+    +++       +L  M   G   +   Y ++I  +   G   E+ 
Sbjct: 256 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 315

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              +QM + GV   + + N+ I+   K G+   A  + D M  +G + D  +++ ++ G 
Sbjct: 316 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 375

Query: 196 CKAGNIKGARLH--LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VK 249
             A +   A +H     M   G   N   +N +++   + G +D A+ +FE M+    + 
Sbjct: 376 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 435

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           D+ T+++++ +LC+  RL  A       +  GV   ++    ++ G  + G   +AK++ 
Sbjct: 436 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 495

Query: 310 SKI 312
           S++
Sbjct: 496 SEM 498



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ ++N LCK         +   + + G  P +VT+N L++G C  G +  A  
Sbjct: 505 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 564

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +   G  PN   Y T++    +N +    L +   M  KG       Y  ++    
Sbjct: 565 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLF 624

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  R   A     +M+  G  + I +Y  ++   C+    + A +LL+++     + D  
Sbjct: 625 QARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII 684

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  I+I  + K G  + A+   + ++  G   N++ Y+ ++  L K+   + A N+F S+
Sbjct: 685 TFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISV 744

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           E      DS   + +V  L     +  AS  L
Sbjct: 745 EKSGHASDSRLLNHIVRMLLNKAEVAKASNYL 776



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 62  RTARWILKELGDSGHAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           R  RW         H+P  I TY  ++ C  R  +  LGL I+  + + G   D F Y +
Sbjct: 142 RMDRWACPR-----HSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-S 195

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  FVK G + +A     +M+  GV   I+  N++I   CK  +++ A  ++ +M   G
Sbjct: 196 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 255

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T++++IDGLCK+  +  A   LE M + G   N   YN ++      G  + ++
Sbjct: 256 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 315

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            VF+ M     +      +S +H L K  R   A  +  S +  G +
Sbjct: 316 RVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPK 362



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 6/183 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++G CKN   D+AL +FR +   G  P  V Y+I++ GL +A R   A+
Sbjct: 574 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 633

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +  E+ +SG   +  TY  ++    RN    +  + LE L AM  K   FD   +  VI
Sbjct: 634 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK---FDIITFNIVI 690

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +A  K+GR +EA +  + + T G+  +I +Y+ +I    KE   E A  L   +EK G  
Sbjct: 691 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHA 750

Query: 183 CDK 185
            D 
Sbjct: 751 SDS 753



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 82/170 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    T    T+ ++L GLC+N  TD A  +   L       +++T+NI+I  + K GR
Sbjct: 639 MIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 698

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ +   +   G  PN  TY+ ++    +   Y+    +  ++++ G+  D      
Sbjct: 699 RQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNH 758

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           ++   +    + +A++Y+  +  + + L+  + + L +L+ +EG ++  +
Sbjct: 759 IVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGMIKGLF 808


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 140/282 (49%), Gaps = 2/282 (0%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   T+  ++NG C+    D A ++ + +  HG+ P  V+Y  L+ GLC+ G+   
Sbjct: 451 GHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLE 510

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           AR ++    +   +PN+ITY+ +M    +  K     +++  M  KG+         ++ 
Sbjct: 511 AREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQ 570

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +  + GR  EA  +ME+ +  G  +++V++ T+I+ +C+  +L+AA  +LD+M       
Sbjct: 571 SLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHA 630

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +T+T L+D L K G I  A   ++ M   G D     Y  ++ R  +  K+D  + + 
Sbjct: 631 DVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAIL 690

Query: 244 ESMEVKD--SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           E M ++      Y+ ++  LC   +L  A KLL   L++  R
Sbjct: 691 EKMILRQKCKTIYNQVIEKLCGLGKLEEADKLLGKVLRTASR 732



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 142/285 (49%), Gaps = 6/285 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M+ G C     + A+ +   +   G +P+ V+Y  ++  LCK  R+   R
Sbjct: 311 IVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVR 370

Query: 66  WILKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++K++  + G   + +TY T++    ++      L  L   + KG+  D  GY  ++ A
Sbjct: 371 DLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHA 430

Query: 125 FVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             K GR+ EA D + +M++ G    D+V+Y  ++N +C+ G+++ A  LL  M   G++ 
Sbjct: 431 LCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKP 490

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  ++T L++GLC+ G    AR  +    +  +  N   Y+ ++  L K+GK+  A +V 
Sbjct: 491 NTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVV 550

Query: 244 ESMEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             M +K  F      + ++ +LC+  R   A K +  CL  G  I
Sbjct: 551 REMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAI 595



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+N +++ L K+ + D AL   +  ++ GF  + V Y+ ++  LCK GR+  A+ ++ E
Sbjct: 387 VTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINE 446

Query: 71  LGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +   GH  P+ +TYT ++    R  +     ++L  M   GY  +   Y  ++    + G
Sbjct: 447 MLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTG 506

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +  EA + M          + ++Y+ L++   KEGKL  A  ++ EM  +GF        
Sbjct: 507 KSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEIN 566

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
           +L+  LC+ G    AR  +E     G   N+  +  ++    ++ ++D A++V + M + 
Sbjct: 567 LLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLI 626

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
               D FTY+++V  L K  R+  A++L+   L  G+       + V+    H  C+ E
Sbjct: 627 NKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVI----HRYCQME 681



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 124/260 (47%), Gaps = 5/260 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++ +++ LCK      A  +   +   G   P++VTY  ++ G C+ G +  A+ +L+ +
Sbjct: 424 YSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIM 483

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G+ PN ++YT ++    R  K     E+++  + + ++ +   Y  ++    K G+L
Sbjct: 484 HTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKL 543

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA D + +MV  G     V  N L+   C++G+   A   ++E   +G   +    T +
Sbjct: 544 SEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTV 603

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I G C+   +  A   L+ M  I   +++  Y  +VD LGK G+I  A  + + M  K  
Sbjct: 604 IHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGI 663

Query: 250 --DSFTYSSMVHNLCKAKRL 267
                TY +++H  C+ +++
Sbjct: 664 DPTPVTYRTVIHRYCQMEKV 683



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ML  L K +    A R+   +++ G       +  ++    +AG+LR A  +L  +  +G
Sbjct: 216 MLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAG 275

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             PN +   T +    R  + +  L  L  M+  G   +   Y  +I  +  + R++EA 
Sbjct: 276 VEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAI 335

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDG 194
           + ++ M + G   D VSY T++   CKE ++     L+ +M K+ G   D+ T+  LI  
Sbjct: 336 ELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHM 395

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----- 249
           L K  +   A   L+   + GF  +   Y+ IV  L K+G++  A ++   M  K     
Sbjct: 396 LTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPP 455

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           D  TY+++V+  C+   +  A KLL      G +    +  A+++GL  +G   EA+++
Sbjct: 456 DVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREM 514



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 42/246 (17%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGF-----GYC--------- 119
           H P  + Y ++++   + +  +    +L  MKR+G   T + F      Y          
Sbjct: 208 HDP--MVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDAL 265

Query: 120 -------------------TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
                              T I  FV+  RL++A  ++E+M   G+  ++V+YN +I  Y
Sbjct: 266 KVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGY 325

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSN 219
           C   ++E A  LLD+M  +G   DK ++  ++  LCK   I   R  ++ M K  G   +
Sbjct: 326 CDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRD 385

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
              YN ++  L K    D A+   +  E K    D   YS++VH LCK  R+  A  L+ 
Sbjct: 386 QVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLIN 445

Query: 276 SCLKSG 281
             L  G
Sbjct: 446 EMLSKG 451



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 2/199 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P     N++L  LC++  T  A +        G    +V +  +I G C+   
Sbjct: 553 MVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDE 612

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L ++       +  TYTT++    +  +     E++  M  KG       Y T
Sbjct: 613 LDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRT 672

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  + ++ ++ +    +E+M+    Q     YN +I   C  GKLE A  LL ++ +  
Sbjct: 673 VIHRYCQMEKVDDLVAILEKMILR--QKCKTIYNQVIEKLCGLGKLEEADKLLGKVLRTA 730

Query: 181 FECDKYTHTILIDGLCKAG 199
              D  T   L++G  K G
Sbjct: 731 SRSDAKTCYALMEGYLKIG 749



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 4/168 (2%)

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           Y  D   Y +++    K    + A   +  M   G+     ++  ++  Y + G+L  A 
Sbjct: 206 YRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDAL 265

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +L  M++ G E +       ID   +A  ++ A   LE M  +G   N+  YNC++   
Sbjct: 266 KVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGY 325

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
               +++ AI + + M  K    D  +Y +++  LCK KR+     L+
Sbjct: 326 CDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLM 373


>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
 gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
          Length = 455

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 140/278 (50%), Gaps = 5/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P  A++  ++N LCK     +A+++   ++++G+    VTYN L++GLC  G 
Sbjct: 11  MIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVRGLCMHGN 70

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  +  +L +L   G  PN  TY+ +++  ++ R     +++L  +  KG+  +   Y  
Sbjct: 71  LNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQPNLVSYNV 130

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K GR +EA  +   + + G   ++VSYN ++   C EG+ E A  LL EM+ + 
Sbjct: 131 LLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDSEE 190

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ ILI  L   G I+ A   L+ M +  F  +   YN I+  L K+GK+D  I
Sbjct: 191 RSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLDLVI 250

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
              + M       +  T+++ +  LCK  R+P A  ++
Sbjct: 251 KCLDQMIHHRCNPNEGTFNA-IAVLCKQGRVPEAFSII 287



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 153/321 (47%), Gaps = 5/321 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I     P   ++N++L GLCK   T+ A+R FR L   GF P +V+YNI+++ LC  GR
Sbjct: 116 IIAKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGR 175

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L E+     +P+ +TY  ++     + + +   E+L  M R  +      Y  
Sbjct: 176 WEEANQLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNP 235

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IA   K G+L      ++QM+      +  ++N  I + CK+G++  A+ ++  +  + 
Sbjct: 236 IIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNA-IAVLCKQGRVPEAFSIIQNLGNKQ 294

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                  +  +I  LC+ GN   A   L  M K GF  +   Y+ ++  L  +G +D A+
Sbjct: 295 RSSTHDFYKGVITSLCRKGNTYPAFQLLYEMTKFGFVPDPYTYSSLIRGLCIEGMLDEAL 354

Query: 241 NVFESMEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  +E  D       +++++   CK+ R   +  +L   ++ G    ++    +V+G+
Sbjct: 355 EIFRLLEENDYRPILDNFNALILGFCKSGRTDLSLDILEMMVEKGYTPNETTYTIIVEGI 414

Query: 297 RHSGCRREAKKIQSKIRMAKI 317
            H   +  A ++  ++ + ++
Sbjct: 415 AHEEEKELAAEVLKELLLRQV 435



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 131/255 (51%), Gaps = 10/255 (3%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A R+   + + G +P+  +Y  L+  LCK G +  A  +++++ ++G+  N +TY ++++
Sbjct: 4   ATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVR 63

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
               +      L++L  +  KG   + F Y  ++ A  K   + EA   +++++  G Q 
Sbjct: 64  GLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQP 123

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++VSYN L+   CKEG+ E A     ++  +GF  +  ++ I++  LC  G  + A   L
Sbjct: 124 NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLL 183

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLCK 263
             M+      +L  YN ++  L   G+I+HA  V + M V+ SF     TY+ ++ +LCK
Sbjct: 184 AEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEM-VRASFKPSATTYNPIIAHLCK 242

Query: 264 AKRLPSASKLLLSCL 278
             +L     L++ CL
Sbjct: 243 EGKL----DLVIKCL 253



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 7/300 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++ +L    K R  + A+++   +   G+ P LV+YN+L+ GLCK GR   A 
Sbjct: 86  LVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQPNLVSYNVLLTGLCKEGRTEEAI 145

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              ++L   G  PN ++Y  I++      +++   ++L+ M  +  +     Y  +I + 
Sbjct: 146 RFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDSEERSPSLVTYNILIGSL 205

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR++ A + +++MV    +    +YN +I   CKEGKL+     LD+M      C+ 
Sbjct: 206 AFHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLDLVIKCLDQMIHH--RCNP 263

Query: 186 YTHTI-LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              T   I  LCK G +  A   ++ +      S  + Y  ++  L + G    A  +  
Sbjct: 264 NEGTFNAIAVLCKQGRVPEAFSIIQNLGNKQRSSTHDFYKGVITSLCRKGNTYPAFQLLY 323

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M     V D +TYSS++  LC    L  A ++     ++  R +     A++ G   SG
Sbjct: 324 EMTKFGFVPDPYTYSSLIRGLCIEGMLDEALEIFRLLEENDYRPILDNFNALILGFCKSG 383



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 119/244 (48%), Gaps = 4/244 (1%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +++ + +SG  P+A +YT ++    +       ++++  M+  GY  +   Y +
Sbjct: 1   MKKATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNS 60

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G L ++   +++++  G+  +  +Y+ L+    KE  +  A  LLDE+  +G
Sbjct: 61  LVRGLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKG 120

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           ++ +  ++ +L+ GLCK G  + A      +   GF+ N+ +YN I+  L  +G+ + A 
Sbjct: 121 WQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEAN 180

Query: 241 NVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   M+ ++      TY+ ++ +L    R+  A ++L   +++  +   +    ++  L
Sbjct: 181 QLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHL 240

Query: 297 RHSG 300
              G
Sbjct: 241 CKEG 244



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           ++ A  +++ M + G   D  ++T L++ LCK GNI  A   +E M + G+ +N   YN 
Sbjct: 1   MKKATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNS 60

Query: 226 IVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +V  L   G ++ ++ + + +     V + FTYS ++    K + +  A KLL   +  G
Sbjct: 61  LVRGLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKG 120

Query: 282 VRILKSAQKAVVDGLRHSGCRREA 305
            +    +   ++ GL   G   EA
Sbjct: 121 WQPNLVSYNVLLTGLCKEGRTEEA 144


>gi|449505420|ref|XP_004162464.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial-like [Cucumis sativus]
          Length = 795

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 150/294 (51%), Gaps = 1/294 (0%)

Query: 4   GDLTPC-TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
            +L P  T  + +++ G C     D A  +F  ++ +G VP+  TY +LI G CK   L+
Sbjct: 279 AELFPIDTYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCKKLNLQ 338

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +   +   G   N +  + I++C  R + Y   +      + KG   D   Y  V+
Sbjct: 339 KALSLHSLMLSKGIKSNCVIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLDNVVYNIVV 398

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            A  ++G+L+EA + +E+M +  +Q+D++ Y T+I     +GK+  A ++ + ++K G E
Sbjct: 399 HALCELGKLEEAIELLEEMTSRQIQMDVMHYTTMIKGLFAQGKIHEAMMMFENLKKNGVE 458

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+++L  G  + G +   +  L+YM + G   + +  + I++ L   GK+  A  +
Sbjct: 459 PDSITYSVLAAGFSRNGLVSKVQDLLDYMEEHGLRKDPKMPDLIIENLCIGGKVKEATEI 518

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           F S+EVK    Y++M++  C A    SA KL ++  K G+ I +S+   +V  L
Sbjct: 519 FNSLEVKTVDNYAAMINGYCAASDTKSAYKLFVNLSKEGIFIRRSSLVRLVSRL 572



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 144/353 (40%), Gaps = 39/353 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T N +LN L ++   + AL ++  L++ G  P   TY  +IKGLCK G++  A 
Sbjct: 177 FVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRFGCQPNDYTYATVIKGLCKIGKMEKAI 236

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I +E+   G  PNA      ++    +     G ++L A + + +  D + Y  VI  F
Sbjct: 237 DIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSGYQLLQAWRAELFPIDTYAYTVVIRGF 296

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG----- 180
               ++ EA      M   GV  D  +Y  LIN YCK+  L+ A  L   M  +G     
Sbjct: 297 CDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCKKLNLQKALSLHSLMLSKGIKSNC 356

Query: 181 ------FEC------------------------DKYTHTILIDGLCKAGNIKGARLHLEY 210
                  +C                        D   + I++  LC+ G ++ A   LE 
Sbjct: 357 VIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLDNVVYNIVVHALCELGKLEEAIELLEE 416

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M       ++  Y  ++  L   GKI  A+ +FE+++      DS TYS +     +   
Sbjct: 417 MTSRQIQMDVMHYTTMIKGLFAQGKIHEAMMMFENLKKNGVEPDSITYSVLAAGFSRNGL 476

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
           +     LL    + G+R        +++ L   G  +EA +I + + +  + +
Sbjct: 477 VSKVQDLLDYMEEHGLRKDPKMPDLIIENLCIGGKVKEATEIFNSLEVKTVDN 529



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +N ++  LC+ +    A  +F  L + G +P+L+TY ++I G CK   LR A  +L ++
Sbjct: 599 VYNKVIASLCRVKNMKMAQCLFDCLVRAGLIPDLITYTMMINGYCKINYLREAYELLCDM 658

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYK-------LGLEILSAMKRKGYTFDGFGYCTVIAA 124
            + G  P+   YT ++   F+    K       L   I + MK    T D   Y  +I  
Sbjct: 659 RNRGREPDIFVYTVLLDGGFKTSLQKCSSVEIALTSSIFNEMKDMKITPDVVYYTVLIDG 718

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           + K+  L +A    E+MV  G++ D V+Y  L++  C+ G  E A  L  EM  +G
Sbjct: 719 YCKMNNLNDAFVLFEEMVDQGIEADAVTYTALLSSCCRNGYKEKAQTLCYEMTSKG 774



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 6/242 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+ + +   L + GFVP + T N L+  L + G++  A  + ++L   G  PN  TY T+
Sbjct: 163 DSVVDLLFRLGRKGFVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRFGCQPNDYTYATV 222

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +K   +  K +  ++I   M   G   + F     I A             ++    +  
Sbjct: 223 IKGLCKIGKMEKAIDIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSGYQLLQAWRAELF 282

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-R 205
            +D  +Y  +I  +C E K++ A  +  +ME  G   D  T+ +LI+G CK  N++ A  
Sbjct: 283 PIDTYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCKKLNLQKALS 342

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
           LH   ++K G  SN    + I+    +       +N F+  + K    D+  Y+ +VH L
Sbjct: 343 LHSLMLSK-GIKSNCVIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLDNVVYNIVVHAL 401

Query: 262 CK 263
           C+
Sbjct: 402 CE 403



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 17/262 (6%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           ++++  LC       A  +F  L+    V  +  Y  +I G C A   ++A  +   L  
Sbjct: 500 DLIIENLCIGGKVKEATEIFNSLE----VKTVDNYAAMINGYCAASDTKSAYKLFVNLSK 555

Query: 74  SG-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            G     +     + + C  N  ++  +E++  +           Y  VIA+  ++  +K
Sbjct: 556 EGIFIRRSSLVRLVSRLCMENSSFR-AIEVMKQLPVMNVEAKEIVYNKVIASLCRVKNMK 614

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A    + +V  G+  D+++Y  +IN YCK   L  AY LL +M  +G E D + +T+L+
Sbjct: 615 MAQCLFDCLVRAGLIPDLITYTMMINGYCKINYLREAYELLCDMRNRGREPDIFVYTVLL 674

Query: 193 DG-------LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           DG        C +  I         M  +    ++  Y  ++D   K   ++ A  +FE 
Sbjct: 675 DGGFKTSLQKCSSVEIALTSSIFNEMKDMKITPDVVYYTVLIDGYCKMNNLNDAFVLFEE 734

Query: 246 MEVK----DSFTYSSMVHNLCK 263
           M  +    D+ TY++++ + C+
Sbjct: 735 MVDQGIEADAVTYTALLSSCCR 756



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 34/308 (11%)

Query: 10  TATFNIMLNGLCK-----------NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           T++FN  LN  CK            R    A   F  L++ GF   + TY  LI+ LC  
Sbjct: 46  TSSFNTSLNVQCKPSKVVQVLESLRREPKIAFSFFCELEERGFQHNISTYAALIRILCSW 105

Query: 59  GRLRTARWILKELGDSGHAPNAI-------------------TYTTIMKCCFRNRKYKLG 99
           G  R    +   L  S      +                    Y  ++K       +   
Sbjct: 106 GLGRKLETLFLNLIGSKKVEFDVLDLIESLNQGCVVDASFIRVYDALIKAYVSVNLFDSV 165

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           +++L  + RKG+    F    ++   ++ G++  A    EQ+   G Q +  +Y T+I  
Sbjct: 166 VDLLFRLGRKGFVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRFGCQPNDYTYATVIKG 225

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CK GK+E A  + +EM   G   + +     I+ LC           L+      F  +
Sbjct: 226 LCKIGKMEKAIDIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSGYQLLQAWRAELFPID 285

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
             AY  ++     + KID A +VF  ME    V D+ TY  +++  CK   L  A  L  
Sbjct: 286 TYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCKKLNLQKALSLHS 345

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 346 LMLSKGIK 353



 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP    + ++++G CK    ++A  +F  +   G   + VTY  L+   C+ G    A+
Sbjct: 705 ITPDVVYYTVLIDGYCKMNNLNDAFVLFEEMVDQGIEADAVTYTALLSSCCRNGYKEKAQ 764

Query: 66  WILKELGDSG-HAPNAITY 83
            +  E+   G   PN  +Y
Sbjct: 765 TLCYEMTSKGILPPNNFSY 783


>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 500

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (5%)

Query: 8   PCTATFNIMLNGLCKNR--YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           P TAT+N++L   C +   + D+A+R+FR + K    P+  +YN LI GLC+  R   A+
Sbjct: 183 PTTATYNVLLKAHCSDAAAHIDDAVRLFRNIPK----PDACSYNTLIDGLCRRSRRVEAQ 238

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ ++G AP  +TYTTI+    R       LE+   M R+G   +   Y ++I   
Sbjct: 239 ELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGL 298

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR   A D +E++  +    + + Y+++IN  CKEG L  A  +LD M  QG + D 
Sbjct: 299 CKGGRAASALDLLERLAKEVKLPNTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDA 358

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN-------CIVDRLGKDGKIDH 238
                LI GLC AG    A  +L+ M   G   N   ++        +V  L   G++  
Sbjct: 359 GLFGKLIVGLCDAGRAVEAANYLDEMVLAGVQPNRVTWSLHVRINVAVVTALCVKGEVGR 418

Query: 239 AINVFESMEVKDSFTYSSMVHNLC----KAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A  V++SM  +   T  S  H L     K   L  A+ ++L  L       +     +V 
Sbjct: 419 AFQVYQSMRTRGISTEPSTFHLLVEFFSKKNHLEKAAHVVLDMLSERCIPERETWDVIVS 478

Query: 295 G-LRHSGCRREAKKIQSKI 312
           G       R+EA++I +K+
Sbjct: 479 GYWSKKKVRQEAEQIWNKL 497



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 16/240 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  ++N L +    D+AL MF  + + G  P +VTY+ LI GLCK GR
Sbjct: 244 MVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLCKGGR 303

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             +A  +L+ L      PN I Y++++    +    +  +E+L  M+ +G   D   +  
Sbjct: 304 AASALDLLERLAKEVKLPNTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGK 363

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN-------TLINLYCKEGKLEAAYLLL 173
           +I      GR  EA +Y+++MV  GVQ + V+++        ++   C +G++  A+ + 
Sbjct: 364 LIVGLCDAGRAVEAANYLDEMVLAGVQPNRVTWSLHVRINVAVVTALCVKGEVGRAFQVY 423

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
             M  +G   +  T  +L++   K         HLE    +  D  + +  CI +R   D
Sbjct: 424 QSMRTRGISTEPSTFHLLVEFFSKKN-------HLEKAAHVVLD--MLSERCIPERETWD 474



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 122/285 (42%), Gaps = 17/285 (5%)

Query: 41  FVPELVTYNILIKGLCKAGRLRTARWIL---KELGDSGHAPNAITYTTIMKCCFRNRKYK 97
            +P   T ++L   L  AG L  A  +L   + L  S +A     + T+++   R  +  
Sbjct: 73  ILPSPDTVSLLTSRLASAGLLPLATSLLSRSRALFPS-NADLEPPFLTLLRAFCRTHRPL 131

Query: 98  LGLEIL-SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
             L++  SA            Y  V+A  V    L  A   +  M   G      +YN L
Sbjct: 132 DALQLFRSAPSALSLPHSARSYTAVLAGLVAHSHLPLAHSLLADMRASGFGPTTATYNVL 191

Query: 157 INLYCKEGK--LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +  +C +    ++ A  L   + K     D  ++  LIDGLC+      A+     M + 
Sbjct: 192 LKAHCSDAAAHIDDAVRLFRNIPKP----DACSYNTLIDGLCRRSRRVEAQELFSEMVEN 247

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G    +  Y  I++ L ++G +D A+ +F+ M       +  TYSS++  LCK  R  SA
Sbjct: 248 GIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLCKGGRAASA 307

Query: 271 SKLLLSCLKSGVRILKSA-QKAVVDGLRHSGCRREAKKIQSKIRM 314
             LL    K  V++  +    +V++GL   G  REA ++  ++R+
Sbjct: 308 LDLLERLAKE-VKLPNTIIYSSVINGLCKEGLLREAMEVLDRMRL 351


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 143/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++GLCK+    ++  +F  +Q  G  P +VTYN +I G C +GR   A+
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +   +PN +TY  ++    +  K+    E+   M  +G   +   Y ++I  F
Sbjct: 309 RLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 368

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A D    M T G   D+ ++ TLI+ YC   +++    LL EM ++G   + 
Sbjct: 369 CKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANT 428

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G C  G++  A    + M   G   ++   N ++D L  +GK+  A+ +F++
Sbjct: 429 VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKA 488

Query: 246 ME--------------------------------------------------VKDSFTYS 255
           M+                                                  V D+ TYS
Sbjct: 489 MQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYS 548

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM+  LCK  RL  A+++ +S
Sbjct: 549 SMIDGLCKQSRLDEATQMFVS 569



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 149/315 (47%), Gaps = 5/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++NGLC+      A+ +   + ++G  P+ +TY   + G+CK G   +A  +
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239

Query: 68  LKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L+++ +  H  PN + Y+ I+    ++ ++     +   M+ KG   +   Y  +I  F 
Sbjct: 240 LRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFC 299

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             GR   A   +++M+   +  ++V+YN LIN + KEGK   A  L DEM  +G   +  
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  +IDG CK   +  A      M   G   ++  +  ++D      +ID  + +   M
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                V ++ TY++++H  C    L +A  L    + SGV         ++DGL  +G  
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479

Query: 303 REAKKIQSKIRMAKI 317
           ++A ++   ++ +K+
Sbjct: 480 KDALEMFKAMQKSKM 494



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 15/297 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T+N M++G CK    D A  MF  +   G  P++ T+  LI G C A R
Sbjct: 349 MLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKR 408

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+   G   N +TY T++            L++   M   G   D     T
Sbjct: 409 IDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 468

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             +GV+ D+++YN LI     EGK   A
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 528

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T++ +IDGLCK   +  A      M    F  N+  +N +++ 
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             K G++D  + +F  M     V D+  Y ++++   K   +  A  +    + SGV
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 137/283 (48%), Gaps = 11/283 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +L+GLC +     AL +F  + +    P+++T+  L+ GLC+ GR+  A 
Sbjct: 147 LHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR----PDVLTFTTLMNGLCREGRVVEAV 202

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-YCTVIAA 124
            +L  + ++G  P+ ITY T +    +       L +L  M+   +       Y  +I  
Sbjct: 203 ALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDG 262

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR  ++ +   +M   G+  +IV+YN +I  +C  G+  AA  LL EM ++    +
Sbjct: 263 LCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPN 322

Query: 185 KYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
             T+  LI+   K G   + A L+ E + + G   N   YN ++D   K  ++D A ++F
Sbjct: 323 VVTYNALINAFVKEGKFFEAAELYDEMLPR-GIIPNTITYNSMIDGFCKQDRLDAAEDMF 381

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             M  K    D FT+++++   C AKR+    +LL    + G+
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 424



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI++ GL        A  ++  +   G VP+ +TY+ +I GLCK  RL  A 
Sbjct: 505 VEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 564

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +G    +PN +T+ T++    +  +   GLE+   M R+G   D   Y T+I  F
Sbjct: 565 QMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 624

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
            K+G +  A D  ++M++ GV  D ++   ++  +  + +LE A  +L++++
Sbjct: 625 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 135/307 (43%), Gaps = 44/307 (14%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN ++  + +    D  + +++ +++     ++ ++ ILIK  C   +L  A   
Sbjct: 79  PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             +L   G  P+ +T+TT++     + +    L++   + R     D   + T++    +
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRP----DVLTFTTLMNGLCR 194

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLIN----------------------------- 158
            GR+ EA   +++MV +G+Q D ++Y T ++                             
Sbjct: 195 EGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVV 254

Query: 159 LY-------CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y       CK+G+   ++ L  EM+ +G   +  T+  +I G C +G    A+  L+ M
Sbjct: 255 IYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEM 314

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            +     N+  YN +++   K+GK   A  +++ M     + ++ TY+SM+   CK  RL
Sbjct: 315 LERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRL 374

Query: 268 PSASKLL 274
            +A  + 
Sbjct: 375 DAAEDMF 381



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 46/299 (15%)

Query: 60  RLRTARWILKELGD----------SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           +LR+  + +K L D          S   P+ I +  +M    R  +  L + +   M+RK
Sbjct: 51  KLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERK 110

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI------------ 157
               D + +  +I  F    +L  A     ++   G+  D+V++ TL+            
Sbjct: 111 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEA 170

Query: 158 -------------------NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
                              N  C+EG++  A  LLD M + G + D+ T+   +DG+CK 
Sbjct: 171 LDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKM 230

Query: 199 GNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----T 253
           G+   A   L  M +I     N+  Y+ I+D L KDG+   + N+F  M+ K  F    T
Sbjct: 231 GDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVT 290

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           Y+ M+   C + R  +A +LL   L+  +        A+++     G   EA ++  ++
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEM 349



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 90/193 (46%), Gaps = 2/193 (1%)

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +I  L++A D    M+       ++ +N L+    +  + +    L  +ME++   CD Y
Sbjct: 58  EIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIY 117

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           + TILI   C    +  A      + K+G   ++  +  ++  L  D ++  A+++F  +
Sbjct: 118 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI 177

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D  T++++++ LC+  R+  A  LL   +++G++  +      VDG+   G    A 
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 307 KIQSKIRMAKISH 319
            +  K  M +ISH
Sbjct: 238 NLLRK--MEEISH 248


>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 149/295 (50%), Gaps = 6/295 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N++L GLCK   T++A+++FR L   GF P +V+YNIL++ LC  GR   A  +
Sbjct: 235 PNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVL 294

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+     +P+ +TY  ++     + + +  LE+L  M R  +      Y  +IA   K
Sbjct: 295 LAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCK 354

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKY 186
             ++      ++QM+      +  +YN +  L C+EG ++ A+ ++  +  KQ F   ++
Sbjct: 355 DRKVDLVVKCLDQMMYRHCNPNEGTYNAIATL-CEEGMVQEAFSIIQSLGNKQHFSTQEF 413

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + I+I  LC+ GN   A   L  M K GF  +   Y+ ++  L  +G ++ AI +F  M
Sbjct: 414 -YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM 472

Query: 247 EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           E     D+  Y+S++   CK++R   A  +    +  G    ++    +V+G+ H
Sbjct: 473 EENIKLDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIH 527



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 120/246 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P  A++  +++ LC+      A+++   ++++G+     TYN L++GLC  G 
Sbjct: 123 MIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGN 182

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  +  +L  L   G  PNA TY+ +++  ++ R      ++L  +  KG   +   Y  
Sbjct: 183 LTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNV 242

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K GR ++A     ++ + G   ++VSYN L+   C EG+ E A +LL EM+   
Sbjct: 243 LLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDE 302

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ ILI  L   G  + A   LE M +  F     +YN I+ RL KD K+D  +
Sbjct: 303 RSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVV 362

Query: 241 NVFESM 246
              + M
Sbjct: 363 KCLDQM 368



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 134/268 (50%), Gaps = 10/268 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  LCK      A+++   +   G +P+  +Y  L+  LC+ G +  A  ++ ++ + G
Sbjct: 103 LLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYG 162

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           +  N  TY ++++    +      L++L  + +KG   + + Y  ++ A  K     EA+
Sbjct: 163 YPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEAS 222

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             +++++  G + ++VSYN L+   CKEG+ E A  L  E+  +GF  +  ++ IL+  L
Sbjct: 223 KLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSL 282

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF--- 252
           C  G  + A + L  M+      +   YN ++  L   G+ +HA+ V E M ++  F   
Sbjct: 283 CNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEM-IRARFKPT 341

Query: 253 --TYSSMVHNLCKAKRLPSASKLLLSCL 278
             +Y+ ++  LCK +++     L++ CL
Sbjct: 342 ASSYNPIIARLCKDRKV----DLVVKCL 365



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++A      + + G  P++     L+  LCK  ++R A  +++ +  SG  P+A +YT +
Sbjct: 79  NDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFL 138

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +    R       ++++  M+  GY  +   Y +++      G L ++   +++++  G+
Sbjct: 139 VSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGL 198

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
             +  +Y+ L+    KE   + A  LLDE+  +G + +  ++ +L+ GLCK G  + A  
Sbjct: 199 VPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQ 258

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
               +   GF  N+ +YN ++  L  +G+ + A  +   M+       + TY+ ++ +L 
Sbjct: 259 LFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLT 318

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
              R   A ++L   +++  +   S+   ++
Sbjct: 319 LHGRTEHALEVLEEMIRARFKPTASSYNPII 349



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           K  RL  A + L+ + + G  P+    T ++    +  K +  ++++  M   G   D  
Sbjct: 74  KELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAA 133

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  ++++  + G +  A   +++M   G   +  +YN+L+   C  G L  +  LLD +
Sbjct: 134 SYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRL 193

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            ++G   + YT++ L++   K      A   L+ +   G   NL +YN ++  L K+G+ 
Sbjct: 194 IQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRT 253

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           + A+ +F  +  K    +  +Y+ ++ +LC   R   A+ LL
Sbjct: 254 EDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLL 295



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 4/183 (2%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL +A  ++E MV  G + D+     L+   CK  K+  A  +++ M   G   D  ++T
Sbjct: 77  RLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYT 136

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
            L+  LC+ GN+  A   ++ M + G+ +N   YN +V  L   G +  ++ + + +   
Sbjct: 137 FLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQK 196

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             V +++TYS ++    K +    ASKLL   +  G +    +   ++ GL   G   +A
Sbjct: 197 GLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDA 256

Query: 306 KKI 308
            ++
Sbjct: 257 MQL 259



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           + I++  LC+   T  A ++   + K+GF P+  TY+ LI+GLC  G L  A  I   + 
Sbjct: 414 YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVME 473

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           ++         + I+ CC ++R+  L L++   M  KGY  +   Y  ++   +    + 
Sbjct: 474 ENIKLDTENYNSLILGCC-KSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMD 532

Query: 133 EATDYMEQM 141
            AT+ + ++
Sbjct: 533 LATEVLREL 541



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP + T++ ++ GLC     + A+ +F  ++++  + +   YN LI G CK+ R   A 
Sbjct: 442 FTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKL-DTENYNSLILGCCKSRRTDLAL 500

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
            + + +   G+  N  TYT +++     ++  L  E+L  ++
Sbjct: 501 DVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQ 542


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 158/318 (49%), Gaps = 7/318 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK---AGRLR 62
           ++P   TFNI+++GLCK      A  + + ++  G  P +VTYN +I G CK   AGR+ 
Sbjct: 181 VSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMY 240

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
               +LKE+ ++G +PN +T+  ++    ++      + +   MK++G       Y  ++
Sbjct: 241 HVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALV 300

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
                 G+++E    +++M   G+  ++ + N+++N +CK+G +  A   +D ME++  +
Sbjct: 301 WGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVK 360

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T+TIL+DG  +   +K A    E M+  G   N   YNC++    ++G       +
Sbjct: 361 PNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGL 420

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            + M +K    D  TY+ ++  LC    +  A KLL   L  G+  +      +++G   
Sbjct: 421 LDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCE 480

Query: 299 SGCRREAKKIQSKIRMAK 316
            G  + A +I++++   K
Sbjct: 481 KGNIKSAYEIRTRMEKGK 498



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 137/296 (46%), Gaps = 39/296 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   TFN+++NG CK+  T  A+R+F  +++ G    +VTY+ L+ GLC  G+
Sbjct: 249 MVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGK 308

Query: 61  LRTARWILKELGDSGHA-----------------------------------PNAITYTT 85
           +     ++ E+ D G                                     PN +TYT 
Sbjct: 309 VEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTI 368

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    R  K K  L +  AM  KG   +   Y  +IA F + G  +  +  +++M   G
Sbjct: 369 LVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKG 428

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V+ DIV+YN LI   C +G++  A  LLDEM   G E    T+  +I+G C+ GNIK A 
Sbjct: 429 VRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAY 488

Query: 206 LHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKIDHAIN-VFESMEVKDSFTYSSM 257
                M K    +N+  YN  +    R+GK  + +  +N + E   V +  TY ++
Sbjct: 489 EIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTI 544



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 113/229 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P  AT N +LNG CK     +A      +++    P +VTY IL+ G  +  +++ A 
Sbjct: 324 LVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDAL 383

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +   G  PNA  Y  ++    RN  ++    +L  M+ KG   D   Y  +I A 
Sbjct: 384 AVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGAL 443

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G +++A   +++M+  G++   ++YNT+IN YC++G +++AY +   MEK     + 
Sbjct: 444 CVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANV 503

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            T+ + I  LC+ G ++     L  M + G   N   Y+ I + + + G
Sbjct: 504 VTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMMEKG 552



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 7/229 (3%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H P+A +   ++       +  L      A  R+  + D F +  VI+   K G+L++A 
Sbjct: 146 HRPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAG 205

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY---LLLDEMEKQGFECDKYTHTILI 192
           D  + +   G+   +V+YNT+I+ YCK G+    Y    LL EM + G   ++ T  +L+
Sbjct: 206 DVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLV 265

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
           +G CK  N   A    E M + G  +++  Y+ +V  L  +GK++  + + + M+    V
Sbjct: 266 NGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLV 325

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
            +  T +S+++  CK   +  A   + S  +  V+        +VDG R
Sbjct: 326 PNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYR 374


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 133/271 (49%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P TA+F  ++ GLC       AL +F  +   GF P++V Y  LI GLCK G    A  +
Sbjct: 142 PDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRL 201

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      P+ + Y T++    ++R+      + S M  KG + +     +++ A   
Sbjct: 202 LRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCN 261

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G  K     + +MV   +  + +S  T+++  CKEG +  A+ ++D M + G E D  T
Sbjct: 262 LGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVT 321

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +T LIDG C    +  A    + M   G   N+ +YN +++   K  ++D A+ +FE M 
Sbjct: 322 YTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMC 381

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + ++ TY++++H LC   RL  A  L 
Sbjct: 382 RQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 412



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 139/309 (44%), Gaps = 4/309 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P    +  +++ LCK+R    A  +F  +   G  P +VT N L+  LC  G  + 
Sbjct: 208 GNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKH 267

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              +L E+ DS   PNAI+ TT++    +        +++  M + G   D   Y  +I 
Sbjct: 268 VNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALID 327

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
                  + EA    + MV  G   ++ SYNTLIN YCK  +++ A  L +EM +Q    
Sbjct: 328 GHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIP 387

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+  LI GLC  G ++ A      M   G   +L  Y  ++D L K+  +D A+ + 
Sbjct: 388 NTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALL 447

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           +++E      D   Y+ ++  +C+A  L  A  L  +    G++        +  GL   
Sbjct: 448 KAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKR 507

Query: 300 GCRREAKKI 308
           G   EA K+
Sbjct: 508 GLLDEATKL 516



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    +  ++NGLCK  +T  A+R+ R ++K    P++V Y  LI  LCK  +
Sbjct: 170 MIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQ 229

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  E+   G +PN +T  +++       ++K    +L+ M       +     T
Sbjct: 230 QTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTT 289

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G + +A D ++ M   GV+ D+V+Y  LI+ +C   +++ A  + D M  +G
Sbjct: 290 VVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKG 349

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +++  LI+G CK   +  A    E M +     N   YN ++  L   G++  AI
Sbjct: 350 CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 409

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M    ++ D  TY  ++  LCK   L  A  LL +   S +         V+DG+
Sbjct: 410 ALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGM 469

Query: 297 RHSGCRREAKKIQSKI 312
             +G   +A+ + S +
Sbjct: 470 CRAGELEDARDLFSNL 485



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 141/322 (43%), Gaps = 5/322 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   +   +++ LCK      A  +   + + G  P++VTY  LI G C    
Sbjct: 275 MVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSE 334

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G APN  +Y T++    +  +    + +   M R+    +   Y T
Sbjct: 335 MDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNT 394

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I     +GRL++A     +MV  G   D+V+Y  L++  CK   L+ A  LL  +E   
Sbjct: 395 LIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSN 454

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   +TI+IDG+C+AG ++ AR     ++  G   N+  YN +   L K G +D A 
Sbjct: 455 LDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEAT 514

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M+      D  TY+++     +      A +LL   L  G     S    +V  L
Sbjct: 515 KLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGML 574

Query: 297 RHSGC-RREAKKIQSKIRMAKI 317
              G  + EA K++      +I
Sbjct: 575 SDDGLDQSEAHKLEDMFPHLRI 596



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 141/298 (47%), Gaps = 4/298 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T N+++N  C     + A  +   + K G  P+  ++  LIKGLC  G++  A  +  ++
Sbjct: 111 TLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKM 170

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ + Y T++    +       + +L +M++     D   Y T+I +  K  + 
Sbjct: 171 IWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQ 230

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +   +M+T G+  +IV+ N+L+   C  G+ +    LL+EM       +  + T +
Sbjct: 231 TQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTV 290

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +D LCK G +  A   ++ M + G + ++  Y  ++D      ++D A+ VF+ M  K  
Sbjct: 291 VDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGC 350

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             + F+Y+++++  CK +R+  A  L     +  +         ++ GL H G  ++A
Sbjct: 351 APNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDA 408



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 4/236 (1%)

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
            P+ + +  I+    + ++Y   L +   M   G   + +    +I +F  + R+  A  
Sbjct: 71  PPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFS 130

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
            + +++  G Q D  S+ TLI   C EG++  A  L D+M  +GF+ D   +  LI+GLC
Sbjct: 131 VLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLC 190

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSF 252
           K G+   A   L  M K     ++  Y  ++  L KD +   A N+F  M  K    +  
Sbjct: 191 KTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIV 250

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           T +S+V+ LC        + LL   + S +     +   VVD L   G   +A  +
Sbjct: 251 TCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDV 306



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 6/274 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+AL  F  +      P +V +  ++  + K  R  T   + +++   G   N  T   +
Sbjct: 56  DDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVL 115

Query: 87  MKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +   C  NR       +L+ + + G   D   + T+I      G++ EA    ++M+ +G
Sbjct: 116 INSFCHLNR-VNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEG 174

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            Q D+V Y TLIN  CK G   AA  LL  MEK   + D   +  LI  LCK      A 
Sbjct: 175 FQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAF 234

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                M   G   N+   N +V  L   G+  H   +   M     + ++ + +++V  L
Sbjct: 235 NLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDAL 294

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           CK   +  A  ++    +SGV        A++DG
Sbjct: 295 CKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDG 328



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 8/184 (4%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + ++    L +A     +M+       IV +  ++    K  +      L  +M+  G  
Sbjct: 47  SKYLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIP 106

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            + YT  +LI+  C    +  A   L  + K+G   +  ++  ++  L  +G+I  A+++
Sbjct: 107 HNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHL 166

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F+ M  +    D   Y+++++ LCK     +A +LL S  K   +        V   L H
Sbjct: 167 FDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQ----PDVVVYGTLIH 222

Query: 299 SGCR 302
           S C+
Sbjct: 223 SLCK 226


>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 149/295 (50%), Gaps = 6/295 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N++L GLCK   T++A+++FR L   GF P +V+YNIL++ LC  GR   A  +
Sbjct: 235 PNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVL 294

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+     +P+ +TY  ++     + + +  LE+L  M R  +      Y  +IA   K
Sbjct: 295 LAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCK 354

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKY 186
             ++      ++QM+      +  +YN +  L C+EG ++ A+ ++  +  KQ F   ++
Sbjct: 355 DRKVDLVVKCLDQMMYRHCNPNEGTYNAIATL-CEEGMVQEAFSIIQSLGNKQHFSTQEF 413

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + I+I  LC+ GN   A   L  M K GF  +   Y+ ++  L  +G ++ AI +F  M
Sbjct: 414 -YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM 472

Query: 247 EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           E     D+  Y+S++   CK++R   A  +    +  G    ++    +V+G+ H
Sbjct: 473 EENIKLDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIH 527



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 120/246 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P  A++  +++ LC+      A+++   ++++G+     TYN L++GLC  G 
Sbjct: 123 MIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGN 182

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  +  +L  L   G  PNA TY+ +++  ++ R      ++L  +  KG   +   Y  
Sbjct: 183 LTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNV 242

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K GR ++A     ++ + G   ++VSYN L+   C EG+ E A +LL EM+   
Sbjct: 243 LLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDE 302

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ ILI  L   G  + A   LE M +  F     +YN I+ RL KD K+D  +
Sbjct: 303 RSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVV 362

Query: 241 NVFESM 246
              + M
Sbjct: 363 KCLDQM 368



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 134/268 (50%), Gaps = 10/268 (3%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  LCK      A+++   +   G +P+  +Y  L+  LC+ G +  A  ++ ++ + G
Sbjct: 103 LLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYG 162

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           +  N  TY ++++    +      L++L  + +KG   + + Y  ++ A  K     EA+
Sbjct: 163 YPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEAS 222

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             +++++  G + ++VSYN L+   CKEG+ E A  L  E+  +GF  +  ++ IL+  L
Sbjct: 223 KLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSL 282

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF--- 252
           C  G  + A + L  M+      +   YN ++  L   G+ +HA+ V E M ++  F   
Sbjct: 283 CNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEM-IRARFKPT 341

Query: 253 --TYSSMVHNLCKAKRLPSASKLLLSCL 278
             +Y+ ++  LCK +++     L++ CL
Sbjct: 342 ASSYNPIIARLCKDRKV----DLVVKCL 365



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++A      + + G  P++     L+  LCK  ++R A  +++ +  SG  P+A +YT +
Sbjct: 79  NDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFL 138

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +    R       ++++  M+  GY  +   Y +++      G L ++   +++++  G+
Sbjct: 139 VSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGL 198

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
             +  +Y+ L+    KE   + A  LLDE+  +G + +  ++ +L+ GLCK G  + A  
Sbjct: 199 VPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQ 258

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
               +   GF  N+ +YN ++  L  +G+ + A  +   M+       + TY+ ++ +L 
Sbjct: 259 LFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLT 318

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
              R   A ++L   +++  +   S+   ++
Sbjct: 319 LHGRTEHALEVLEEMIRARFKPTASSYNPII 349



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           K  RL  A + L+ + + G  P+    T ++    +  K +  ++++  M   G   D  
Sbjct: 74  KELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAA 133

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  ++++  + G +  A   +++M   G   +  +YN+L+   C  G L  +  LLD +
Sbjct: 134 SYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRL 193

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            ++G   + YT++ L++   K      A   L+ +   G   NL +YN ++  L K+G+ 
Sbjct: 194 IQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRT 253

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           + A+ +F  +  K    +  +Y+ ++ +LC   R   A+ LL
Sbjct: 254 EDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLL 295



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 4/183 (2%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL +A  ++E MV  G + D+     L+   CK  K+  A  +++ M   G   D  ++T
Sbjct: 77  RLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYT 136

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--- 246
            L+  LC+ GN+  A   ++ M + G+ +N   YN +V  L   G +  ++ + + +   
Sbjct: 137 FLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQK 196

Query: 247 -EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             V +++TYS ++    K +    ASKLL   +  G +    +   ++ GL   G   +A
Sbjct: 197 GLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDA 256

Query: 306 KKI 308
            ++
Sbjct: 257 MQL 259



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           + I++  LC+   T  A ++   + K+GF P+  TY+ LI+GLC  G L  A  I   + 
Sbjct: 414 YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVME 473

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           ++         + I+ CC ++R+  L L++   M  KGY  +   Y  ++   +    + 
Sbjct: 474 ENIKLDTENYNSLILGCC-KSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMD 532

Query: 133 EATDYMEQM 141
            AT+ + ++
Sbjct: 533 LATEVLREL 541



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP + T++ ++ GLC     + A+ +F  ++++  + +   YN LI G CK+ R   A 
Sbjct: 442 FTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKL-DTENYNSLILGCCKSRRTDLAL 500

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
            + + +   G+  N  TYT +++     ++  L  E+L  ++
Sbjct: 501 DVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQ 542


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 154/320 (48%), Gaps = 10/320 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +++G CK    + + ++   ++     P L+T+N L+KGL KAG 
Sbjct: 240 MLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGM 299

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LKE+ D G  P+A T++ +      N K +  L +       G   + +    
Sbjct: 300 VEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSI 359

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K G++++A + + + +  G+  + V YNT+I+ YC++G L  A + ++ MEKQG
Sbjct: 360 LLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQG 419

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   +  LI   C+ G ++ A   +  M   G   ++E YN ++   G+  + D   
Sbjct: 420 MKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCF 479

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + ME    + +  +Y ++++ LCK  +L  A  +       GV         ++DG 
Sbjct: 480 DILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGC 539

Query: 297 RHSGCRREAKKIQSKIRMAK 316
              G      KI+   R +K
Sbjct: 540 CSKG------KIEDAFRFSK 553



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 127/242 (52%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N++++GLCK +  ++A ++F  +     +P L+TYN LI G CKAG    +  +
Sbjct: 212 PSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKV 271

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +      P+ IT+ T++K  F+    +    +L  MK  G+  D F +  +   +  
Sbjct: 272 RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSS 331

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             + + A    E  V  GV+++  + + L+N  CKEGK+E A  +L     +G   ++  
Sbjct: 332 NEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVI 391

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +IDG C+ G++ GAR+ +E M K G   +  AYNC++ R  + G++++A      M+
Sbjct: 392 YNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMK 451

Query: 248 VK 249
           +K
Sbjct: 452 LK 453



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 124/272 (45%), Gaps = 3/272 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N M++G C+      A      ++K G  P+ + YN LI+  C+ G +  A 
Sbjct: 385 LVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAE 444

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + ++   G +P+  TY  ++    R  ++    +IL  M+  G   +   Y T+I   
Sbjct: 445 KEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCL 504

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  +L EA      M   GV   +  YN LI+  C +GK+E A+    EM K+G E + 
Sbjct: 505 CKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNL 564

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDGL   G +  A   L  +++ G   ++  YN ++   G  G +   I ++E 
Sbjct: 565 VTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEE 624

Query: 246 ME---VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M+   +K +     ++ +LC  + +    +L 
Sbjct: 625 MKRSGIKPTLKTYHLLISLCTKEGIELTERLF 656



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 132/299 (44%), Gaps = 4/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   TF+I+ +G   N   + AL ++      G      T +IL+  LCK G++  A 
Sbjct: 315 FVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAE 374

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL      G  PN + Y T++    R          + AM+++G   D   Y  +I  F
Sbjct: 375 EILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRF 434

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++G ++ A   + +M   GV   + +YN LI  Y ++ + +  + +L EME  G   + 
Sbjct: 435 CELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNV 494

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  LI+ LCK   +  A++    M   G    +  YN ++D     GKI+ A    + 
Sbjct: 495 VSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKE 554

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M  K    +  TY++++  L    +L  A  LLL   + G++       +++ G   +G
Sbjct: 555 MLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAG 613



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 133/287 (46%), Gaps = 7/287 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            +++LN   +++    A  +F  L+  G  P   +  +L+  L K  + R    +   + 
Sbjct: 115 LSVLLN---ESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNIL 171

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +S   P+   Y   ++   +      GLE+ + MK        F Y  +I    K  R+ 
Sbjct: 172 ESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMN 231

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A    ++M+   +   +++YNTLI+ YCK G  E ++ + + M+    E    T   L+
Sbjct: 232 DAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLL 291

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVK 249
            GL KAG ++ A   L+ M  +GF  +   ++ + D    + K + A+ V+E+     VK
Sbjct: 292 KGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVK 351

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +++T S +++ LCK  ++  A ++L   +  G+   +     ++DG
Sbjct: 352 MNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDG 398



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 31/242 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P    +N++++G C     ++A R  + + K G    LVTYN LI GL   G+L  A 
Sbjct: 525 VSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAE 584

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-------------- 111
            +L E+   G  P+  TY +++         +  + +   MKR G               
Sbjct: 585 DLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLC 644

Query: 112 TFDG-------FG----------YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
           T +G       FG          Y  V+  +   G +++A +  +QM+   + LD  +YN
Sbjct: 645 TKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYN 704

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +LI    K GKL     L+DEM  +  E +  T+ I++ G C+  +   A +    M + 
Sbjct: 705 SLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEK 764

Query: 215 GF 216
           GF
Sbjct: 765 GF 766



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 4/207 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G          + ++  +++ G  P L TY++LI    K G   T R
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTER 654

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
                 G+    P+ + Y  ++ C   +   +    +   M  K    D   Y ++I   
Sbjct: 655 L----FGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQ 710

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K+G+L E    +++M    ++ +  +YN ++  +C+     +AY+   EM+++GF  D 
Sbjct: 711 LKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDV 770

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMN 212
                L+ GL +    K A + +  MN
Sbjct: 771 CIGNELVSGLKEEWRSKEAEIVISEMN 797


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 146/309 (47%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N ++ GLC       AL     +   GF    V+Y  LI GLCK G  +    +
Sbjct: 131 PNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARL 190

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L++L      P+ + Y TI+    +N+      ++ S M  KG + +   Y  ++  F  
Sbjct: 191 LRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCI 250

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G LKEA   + +M    +  D+ ++NTLI+   KEGK++AA ++L  M K   + D  T
Sbjct: 251 MGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVT 310

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LIDG      +K A+     M + G   N+  Y  ++D L K+  +D A+++FE M+
Sbjct: 311 YNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMK 370

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D  TY+S++  LCK   L  A  L     + G++    +   ++D L   G   
Sbjct: 371 YKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLE 430

Query: 304 EAKKIQSKI 312
            AK+   ++
Sbjct: 431 NAKEFFQRL 439



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 144/287 (50%), Gaps = 4/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T+N ++ G C   +   A  +   ++     P++ T+N LI  L K G+
Sbjct: 229 MIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGK 288

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ +L  +  +   P+ +TY +++   F   K K    +  +M + G T +   Y T
Sbjct: 289 MKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTT 348

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K   + EA    E+M    +  DIV+Y +LI+  CK   LE A  L  +M++QG
Sbjct: 349 MIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQG 408

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D Y++TIL+D LCK G ++ A+   + +   G+  N++ YN +++ L K      A+
Sbjct: 409 IQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAM 468

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           ++   ME    + D+ T+ +++  L +      A K+L   +  G++
Sbjct: 469 DLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQ 515



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 156/336 (46%), Gaps = 27/336 (8%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+  +++GLCKN + + A+ + + +++ G  P++ +Y IL+  LCK GRL  A
Sbjct: 373 NMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENA 432

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           +   + L   G+  N  TY  ++    +   +   +++ S M+ KG   D   + T+I A
Sbjct: 433 KEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICA 492

Query: 125 FVKIG-----------------------RLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
             +                         RLKEA   +  M    ++ D+V+Y TL++ Y 
Sbjct: 493 LFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYF 552

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
              +L+ A  +   M + G   +   +TI+IDGLCK   +  A    E M       N+ 
Sbjct: 553 LVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIV 612

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            Y  ++D L K+  ++ AI + + M+      D ++Y+ ++  LCK+ RL  A ++    
Sbjct: 613 TYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRL 672

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           L  G  +      A+++ L  +G   EA  +Q K+ 
Sbjct: 673 LVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKME 708



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 136/270 (50%), Gaps = 4/270 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++ LCKN+   +A  ++  +   G  P +VTYN L+ G C  G L+ A  +
Sbjct: 201 PDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSL 260

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      P+  T+ T++    +  K K    +L+ M +     D   Y ++I  +  
Sbjct: 261 LNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFF 320

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + ++K A      M   GV  ++ +Y T+I+  CKE  ++ A  L +EM+ +    D  T
Sbjct: 321 LNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVT 380

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LIDGLCK  +++ A    + M + G   ++ +Y  ++D L K G++++A   F+ + 
Sbjct: 381 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLL 440

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKL 273
           VK    +  TY+ M++ LCKA     A  L
Sbjct: 441 VKGYHLNVQTYNVMINGLCKADLFGEAMDL 470



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 27/298 (9%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI------------------- 52
           T+N+M+NGLCK      A+ +   ++  G +P+ +T+  +I                   
Sbjct: 450 TYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREM 509

Query: 53  --KGLCKAG--RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
             +GL +A   RL+ A+ +L  +  +   P+ +TY T+M   F   + K    +  +M +
Sbjct: 510 IARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQ 569

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G T +   Y  +I    K   + EA    E+M    +  +IV+Y +LI+  CK   LE 
Sbjct: 570 MGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLER 629

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  LL EM++ G + D Y++TIL+DGLCK+G ++GA+   + +   G+  N++ Y  +++
Sbjct: 630 AIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMIN 689

Query: 229 RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            L K G  D A+++   ME K    D+ T+  ++  L +      A K+L   +  G+
Sbjct: 690 ELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN +L+ L  N++    + +F+  + +G  P+L T NIL+   C    +  A  +
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L  +   G+ PNAIT  T++K  CFR  + K  L     +  +G+  +   Y T+I    
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRG-EIKKALYFHDQVVAQGFQLNQVSYRTLINGLC 179

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G  K     + ++    V+ D+V YNT+I+  CK   L  A  L  EM  +G   +  
Sbjct: 180 KTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVV 239

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  L+ G C  G++K A   L  M     + ++  +N ++D LGK+GK+  A  V   M
Sbjct: 240 TYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVM 299

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                  D  TY+S++       ++ +A  +  S  +SGV         ++DGL
Sbjct: 300 MKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGL 353



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++G        +A  +F  + + G  P +  Y I+I GLCK   +  A 
Sbjct: 537 IKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAM 596

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+      PN +TYT+++    +N   +  + +L  MK  G   D + Y  ++   
Sbjct: 597 SLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGL 656

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRL+ A +  ++++  G  L++  Y  +IN  CK G  + A  L  +ME +G   D 
Sbjct: 657 CKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDA 716

Query: 186 YTHTILIDGL 195
            T  I+I  L
Sbjct: 717 VTFDIIIWAL 726



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 86/176 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP    + IM++GLCK +  D A+ +F  ++     P +VTY  LI  LCK   L  A 
Sbjct: 572 VTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAI 631

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKE+ + G  P+  +YT ++    ++ + +   EI   +  KGY  +   Y  +I   
Sbjct: 632 ALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINEL 691

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
            K G   EA D   +M   G   D V+++ +I    ++ + + A  +L EM  +G 
Sbjct: 692 CKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 74/142 (52%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+  +++ LCKN + + A+ + + +++HG  P++ +Y IL+ GLCK+GRL  A
Sbjct: 606 NMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGA 665

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + I + L   G+  N   YT ++    +   +   L++   M+ KG   D   +  +I A
Sbjct: 666 KEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWA 725

Query: 125 FVKIGRLKEATDYMEQMVTDGV 146
             +     +A   + +M+  G+
Sbjct: 726 LFEKDENDKAEKILXEMIARGL 747



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 4/207 (1%)

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           F +  ++++ V            ++  ++G   D+ + N L+N +C    +  A+ +L  
Sbjct: 64  FHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLAN 123

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           + K+G+  +  T   LI GLC  G IK A    + +   GF  N  +Y  +++ L K G+
Sbjct: 124 ILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGE 183

Query: 236 IDHAINVFESME---VK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
                 +   +E   VK D   Y++++H+LCK K L  A  L    +  G+        A
Sbjct: 184 TKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNA 243

Query: 292 VVDGLRHSGCRREAKKIQSKIRMAKIS 318
           +V G    G  +EA  + +++++  I+
Sbjct: 244 LVYGFCIMGHLKEAFSLLNEMKLKNIN 270


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 137/287 (47%), Gaps = 6/287 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  +L+     +NIM++G  K   T  A+++++ L + G  P +VT+N L+ G C   +
Sbjct: 517 LITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRK 576

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR +L  +   G  PNA+TYTT+M         +  LE+LS MK K        Y  
Sbjct: 577 LSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTV 636

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    K  +L+E+   +E M   G+  D VSYNT+I  +CK   +  A+ L D+M    
Sbjct: 637 VIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHN 696

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E    T+ ILI+G C  G++K A   L  +     + N  AY  I+      G +D A+
Sbjct: 697 LEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAV 756

Query: 241 NVFESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             F  M V+  F      YS+++  LCK   +  A       L  GV
Sbjct: 757 VYFRQM-VEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGV 802



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 143/314 (45%), Gaps = 49/314 (15%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +  P   +FN +++  CK  + D A   F  + KHG +P+  +YNILI GLC AG +  A
Sbjct: 276 EFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEA 335

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL-----EILSAMKRKGYTFDGFGYC 119
             +  ++ + G  P+ +TY  + K  FR     LGL      I+  M  KG   +   Y 
Sbjct: 336 LDLKNDMENHGLEPDMVTYNILAK-GFR----LLGLINGAWNIIQKMLIKGPNPNLVTYT 390

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    +IG ++EA    ++M++ G QL I+S   L+   CK  +++ A+ L  EME  
Sbjct: 391 VLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEAN 450

Query: 180 GFECDKYTHTILIDGLCKAGNIK-----------------------------------GA 204
           G   D  T++ LI GLCK G ++                                    A
Sbjct: 451 GLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQA 510

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
           R++ +Y+       ++  YN ++D   K G    A+ +++ +  K       T++S+++ 
Sbjct: 511 RMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYG 570

Query: 261 LCKAKRLPSASKLL 274
            C  ++L  A +LL
Sbjct: 571 FCINRKLSQARRLL 584



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 143/318 (44%), Gaps = 39/318 (12%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           ++L  LCK+R  D A ++F  ++ +G  P+L+TY+ LI GLCK G ++ A  + +++  +
Sbjct: 426 VLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSN 485

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
              PN++ +  I+       K          +     + D   Y  +I  ++K G  +EA
Sbjct: 486 RIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREA 545

Query: 135 TDYMEQMVTDGVQLDIVSYN-----------------------------------TLINL 159
               +Q+   G+   IV++N                                   TL+N+
Sbjct: 546 VKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNV 605

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           YC+EG +++   LL EM+ +       T+T++I GLCK   ++ +   LE M+ +G   +
Sbjct: 606 YCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPD 665

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLL 275
             +YN I+    K   +  A  +++ M + +    S TY+ +++  C    L  A  LL+
Sbjct: 666 QVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLV 725

Query: 276 SCLKSGVRILKSAQKAVV 293
           S     V + K A   ++
Sbjct: 726 SLQNRKVNLNKYAYTTII 743



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 36/284 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   TFN ++ G C NR    A R+   ++ HG  P  VTY  L+   C+ G +++  
Sbjct: 557 ISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLL 616

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+      P  ITYT ++K   +  K +   ++L  M   G T D   Y T+I AF
Sbjct: 617 ELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAF 676

Query: 126 VK-----------------------------------IGRLKEATDYMEQMVTDGVQLDI 150
            K                                    G LK+A + +  +    V L+ 
Sbjct: 677 CKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNK 736

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y T+I  +C +G ++ A +   +M ++GFE     ++ +I  LCK   +  A+     
Sbjct: 737 YAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCM 796

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTY 254
           M   G   + + +  +++   + G ++    +   M +K  + Y
Sbjct: 797 MLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEM-IKSGWLY 839



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 126/308 (40%), Gaps = 39/308 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+  G       + A  + + +   G  P LVTY +LI G C+ G +  A 
Sbjct: 347 LEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEAL 406

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+   G   + I+ T ++    ++R+  +  ++   M+  G   D   Y T+I   
Sbjct: 407 KLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGL 466

Query: 126 VKIGRLKEAT-----------------------------------DYMEQMVTDGVQLDI 150
            K G +++A                                     Y + ++T  + LDI
Sbjct: 467 CKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDI 526

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           + YN +I+ Y K G    A  L  ++ ++G      T   L+ G C    +  AR  L+ 
Sbjct: 527 ILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDT 586

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           +   G + N   Y  +++   ++G +   + +   M+ K       TY+ ++  LCK  +
Sbjct: 587 IKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWK 646

Query: 267 LPSASKLL 274
           L  + +LL
Sbjct: 647 LQESCQLL 654



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 112/244 (45%), Gaps = 9/244 (3%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
           V +++L     ++  +  A ++L ++ D     +  TY +++   +  R   +  ++ + 
Sbjct: 180 VVWDMLACAYSRSAMVHDALFVLVKMKDLNFIVSIQTYNSLL---YNLRHSNIMWDVYNE 236

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           +K  G     +    V+    +  R ++A  + +       Q  +VS+NT+++ YCK G 
Sbjct: 237 IKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGF 296

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY-MNKIGFDSNLEAYN 224
           ++ A      M K G   D Y++ ILI GLC AG++ G  L L+  M   G + ++  YN
Sbjct: 297 VDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSM-GEALDLKNDMENHGLEPDMVTYN 355

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +       G I+ A N+ + M +K    +  TY+ ++   C+   +  A KL    +  
Sbjct: 356 ILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISH 415

Query: 281 GVRI 284
           G ++
Sbjct: 416 GFQL 419


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 143/309 (46%), Gaps = 4/309 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P  A  + ++ GL +     +A  +   ++K G +P L  YN LI  LCK G+
Sbjct: 322 MIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGK 381

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + KE+G+ G   N +TY+ ++    R  K    +  L  M   G     + Y +
Sbjct: 382 FDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNS 441

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+G L  A  + ++M+  G++  +VSY +LI+ YC +GKL  A+ L  EM  +G
Sbjct: 442 LINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKG 501

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + YT T LI  L +A  +  A    + M +     N   YN +++   K+G    A 
Sbjct: 502 IAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAF 561

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   M     V D++TY  ++ +LC   R+  A K +    +   ++ +    A++ G 
Sbjct: 562 ELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGY 621

Query: 297 RHSGCRREA 305
              G  R+A
Sbjct: 622 CKEGRLRDA 630



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 146/308 (47%), Gaps = 7/308 (2%)

Query: 6   LTPCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P T TF  +++ L + NR TD A R+F  + +   +P  VTYN++I+G CK G    A
Sbjct: 502 IAPNTYTFTTLISALFRANRMTD-AFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKA 560

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L ++   G  P+  TY  ++       +     + +  + R+ +  +   Y  ++  
Sbjct: 561 FELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHG 620

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K GRL++A     +MV  GV +D+V Y  LI+   KE    A + LL  M  Q    D
Sbjct: 621 YCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPD 680

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           K  +T +IDG  KAG++K A    + M   G   N+  Y  +++ L K G +D A  +++
Sbjct: 681 KVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWK 740

Query: 245 SMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M V +S     TY   + +L +   +  A +L    LK G+     +   +V G    G
Sbjct: 741 EMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLG 799

Query: 301 CRREAKKI 308
              EA K+
Sbjct: 800 RVEEATKL 807



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 139/290 (47%), Gaps = 4/290 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
              +N++++GLCKN+    A+ +  GL + G     VTY  L+ GLCK         ++ 
Sbjct: 261 VVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMD 320

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ + G  P     +++++   R  K     ++++ +K+ G     F Y  +I +  K G
Sbjct: 321 EMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDG 380

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +  EA    ++M   G+  + V+Y+ LI+ +C+ GKL+ A   L +M   G +   Y + 
Sbjct: 381 KFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYN 440

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LI+G CK GN+  A    + M   G    + +Y  ++      GK+  A  ++  M  K
Sbjct: 441 SLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGK 500

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
               +++T+++++  L +A R+  A +L    L+  +   +     +++G
Sbjct: 501 GIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEG 550



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 4/299 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T++I+++  C+    D A+     +   G    +  YN LI G CK G L  A     E
Sbjct: 402 VTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDE 461

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D G  P  ++YT+++       K      +   M  KG   + + + T+I+A  +  R
Sbjct: 462 MIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANR 521

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + +A    ++M+   +  + V+YN +I  +CKEG    A+ LL++M ++G   D YT+  
Sbjct: 522 MTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRP 581

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LI  LC  G +  A+  ++ +++  F  N   Y+ ++    K+G++  A+ V   M  + 
Sbjct: 582 LISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRG 641

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              D   Y+ ++    K +   +   LL +     +R  K    +++DG   +G  ++A
Sbjct: 642 VDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKA 700



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 131/277 (47%), Gaps = 3/277 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   T+N+M+ G CK   T  A  +   + + G VP+  TY  LI  LC  GR
Sbjct: 532 MLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGR 591

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+  + +L       N + Y+ ++    +  + +  L +   M ++G   D   Y  
Sbjct: 592 VCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAV 651

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I   +K          ++ M    ++ D V Y ++I+ Y K G ++ A+ + D M  +G
Sbjct: 652 LIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEG 711

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T LI+ LCKAG +  A L  + M       N   Y C +D L ++G ++ A+
Sbjct: 712 CTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAV 771

Query: 241 NVFESM---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +   M    + ++ +Y+ +V   CK  R+  A+KLL
Sbjct: 772 QLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATKLL 808



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 150/351 (42%), Gaps = 39/351 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +      +N ++NG CK      A+  F  +   G  P +V+Y  LI G C  G+
Sbjct: 427 MIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGK 486

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK----YKL------------------ 98
           L  A  +  E+   G APN  T+TT++   FR  +    ++L                  
Sbjct: 487 LHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNV 546

Query: 99  -------------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                          E+L+ M +KG   D + Y  +I++    GR+ EA  +++ +  + 
Sbjct: 547 MIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREH 606

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            +L+ + Y+ L++ YCKEG+L  A  +  EM K+G + D   + +LIDG  K  +     
Sbjct: 607 FKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVF 666

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
             L+ M+      +   Y  ++D   K G +  A  +++ M       +  TY+++++ L
Sbjct: 667 GLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINEL 726

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           CKA  +  A  L    L S            +D L   G   +A ++ + +
Sbjct: 727 CKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM 777



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 133/306 (43%), Gaps = 37/306 (12%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL------------------- 45
           +L P   T   +LNGL K R  D  L +F  +   G  P++                   
Sbjct: 188 ELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKA 247

Query: 46  --------------VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
                         V YN+LI GLCK  R+  A  I   L   G   + +TY T++    
Sbjct: 248 KEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLC 307

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           + +++++G  ++  M   G+        +++    + G++ +A D + ++   G    + 
Sbjct: 308 KVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLF 367

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
            YN LIN  CK+GK + A LL  EM ++G   +  T++ILID  C+ G +  A   L  M
Sbjct: 368 VYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKM 427

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
              G    +  YN +++   K G +  A++ F+ M  K       +Y+S++   C   +L
Sbjct: 428 IMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKL 487

Query: 268 PSASKL 273
             A +L
Sbjct: 488 HEAFRL 493



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  M++G  K      A  ++  +   G  P +VTY  LI  LCKAG +  A 
Sbjct: 677 LRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAE 736

Query: 66  WILKELGDSGHAPNAITYTTIMKCCF-----RNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + KE+  S   PN +TY     CCF     R    +  +++ + M  KG   +   Y  
Sbjct: 737 LLWKEMLVSNSTPNHVTY-----CCFLDHLAREGSMEKAVQLHNDM-LKGLLANTVSYNI 790

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F K+GR++EAT  +++M+ + +  D ++Y+T+I   C+ G L+ A    D M  +G
Sbjct: 791 LVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKG 850

Query: 181 FECDKYTHTILIDGLCKAGNIKGA 204
            + D   +  LI G C AG +  A
Sbjct: 851 LKPDTLAYNFLIYGCCIAGELGKA 874



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 17/231 (7%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           + ++++G  K + T     + + +      P+ V Y  +I G  KAG ++ A  I   + 
Sbjct: 649 YAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMI 708

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGL----EIL-SAMKRKGYTFDGFGYCTVIAAFVK 127
           D G  PN +TYTT++     N   K GL    E+L   M     T +   YC  +    +
Sbjct: 709 DEGCTPNIVTYTTLI-----NELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAR 763

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +++A      M+  G+  + VSYN L+  +CK G++E A  LLDEM       D  T
Sbjct: 764 EGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCIT 822

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN------CIVDRLGK 232
           ++ +I   C+ GN+ GA    + M   G   +  AYN      CI   LGK
Sbjct: 823 YSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGK 873



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 38/202 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  + TP   T+   L+ L +    + A+++   + K G +   V+YNIL++G CK GR
Sbjct: 742 MLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGR 800

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +L E+ D+   P+ ITY+TI+ +CC R                           
Sbjct: 801 VEEATKLLDEMIDNAIFPDCITYSTIIYQCCRR--------------------------- 833

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
                    G L  A ++ + M+  G++ D ++YN LI   C  G+L  A+ L D+M ++
Sbjct: 834 ---------GNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRR 884

Query: 180 GFECDKYTHTILIDGLCKAGNI 201
           G + ++ TH  L  G  +  +I
Sbjct: 885 GVKPNQATHKSLSHGASRKFSI 906



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 123/272 (45%), Gaps = 11/272 (4%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
            +K  F+  L  +++LI+   +  R+  +  I + +      P   T   ++    + R+
Sbjct: 150 FEKCDFISSL-GFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRR 208

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
             + L +   +   G   D + Y  VI +F ++    +A + +++M  +   L++V YN 
Sbjct: 209 VDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRM--ESSDLNVVVYNV 266

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+  CK  ++  A  + + + ++G    + T+  L+ GLCK    +     ++ M ++G
Sbjct: 267 LIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELG 326

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
           F     A + +V+ L + GK+  A ++   ++    +   F Y++++++LCK  +   A 
Sbjct: 327 FVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAE 386

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            L     + G+     A       L  S CRR
Sbjct: 387 LLFKEMGEKGL----CANDVTYSILIDSFCRR 414



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 122/293 (41%), Gaps = 30/293 (10%)

Query: 29  ALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           ALR F  L  H  F    +++ ILI  L  A     A  +L+ L   G       +  ++
Sbjct: 88  ALRFFNFLGLHKNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALL 147

Query: 88  KCCFRNRKY--KLGLEIL-SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
            C F    +   LG ++L  +  ++   FD           V I RL    + M Q+ T 
Sbjct: 148 DC-FEKCDFISSLGFDLLIQSYVQEKRMFDS----------VLIFRLMRQCELMPQVRTL 196

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G          ++N   K  +++   +L  E+   G   D Y +  +I   C+  N   A
Sbjct: 197 G---------EVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKA 247

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
           +  ++ M     D N+  YN ++  L K+ ++  A+ +   +  K       TY ++V  
Sbjct: 248 KEMIQRME--SSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLG 305

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           LCK +     + ++   ++ G    ++A  ++V+GLR  G   +A  + ++++
Sbjct: 306 LCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVK 358


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 41/317 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++ +++  LC +R  D A+ + R ++  G   ++VTY  LI+GLC A  +  A  +
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+ +SG  PN + Y+++++   ++ +++   ++   M  KG   D   Y  +I +  K
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+ K+A   M+ MV  G++ ++V+YN LIN  CKEG ++ A  +L +M ++G   D  T
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVT 292

Query: 188 HTILIDGLCKAGNIKGARLHLEYM---------NKIGFDS-------------------- 218
           +  LI GL     +  A   LE M         N + F+S                    
Sbjct: 293 YNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAM 352

Query: 219 --------NLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
                   NL  YN ++  L +  K+  A+ + + M       DSFTYS ++   CK  +
Sbjct: 353 MEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQ 412

Query: 267 LPSASKLLLSCLKSGVR 283
           +  A  LL +    G+ 
Sbjct: 413 VDRAEDLLSTMRDRGIE 429



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 148/335 (44%), Gaps = 40/335 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +L G CK+   ++  ++F  + + G  P++V Y  LI  LCK G+ + A 
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   G  PN +TY  ++ C  +    K  + +L  M  KG   D   Y T+I   
Sbjct: 241 GVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 126 VKIGRLKEATDYMEQMV--TDGVQLDIVSYNTLINLYCKEGKLEAAYL------------ 171
             +  + EA   +E+MV   + V+ ++V++N++I   C  G++  A+             
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV 360

Query: 172 -----------------------LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
                                  L+DEM   G E D +T++ILI G CK   +  A   L
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLL 420

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAK 265
             M   G +  L  Y  ++  + + G ++ A N+F  M+     D   YS+M+H  CKA 
Sbjct: 421 STMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAG 480

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            L +A +LL S +  G+         V++    SG
Sbjct: 481 DLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSG 515



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 140/279 (50%), Gaps = 11/279 (3%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRKYKL 98
           V + V+YN ++  LC+ G    A  +L+ +    H    PNA++YT +M+    +R    
Sbjct: 74  VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQ 133

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            + +L +M+  G   D   Y T+I        + +A + M +M   G++ ++V Y++L+ 
Sbjct: 134 AVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            YCK G+ E    +  EM ++G E D   +T LID LCK G  K A   ++ M + G + 
Sbjct: 194 GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           N+  YN +++ + K+G +  AI V + M  K    D  TY++++  L     +  A  LL
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL 313

Query: 275 LSCLKSGVRILKS---AQKAVVDGLRHSGCRREAKKIQS 310
              ++ G  I+K       +V+ GL   G  R+A ++++
Sbjct: 314 EEMVR-GKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 149/287 (51%), Gaps = 7/287 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N+++N +CK      A+ + + + + G  P++VTYN LIKGL     
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLE 305

Query: 61  LRTARWILKEL--GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           +  A W+L+E+  G +   PN +T+ ++++      + +   ++ + M+  G   +   Y
Sbjct: 306 MDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTY 365

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +I   +++ ++++A + M++M + G++ D  +Y+ LI  +CK  +++ A  LL  M  
Sbjct: 366 NLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD 425

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G E + + +  L+  +C+ G ++ AR     M+   F  ++ AY+ ++    K G +  
Sbjct: 426 RGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKT 484

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           A  + +S+       D+ TYS +++   K+  + +A+ +L     SG
Sbjct: 485 AKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASG 531



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 138/272 (50%), Gaps = 1/272 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLC       A ++   +++ G +  LVTYN+LI GL +  ++R A  +
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G  P++ TY+ ++K   +  +     ++LS M+ +G   + F Y  ++ A  +
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A +   +M  +   LD+V+Y+T+I+  CK G L+ A  LL  +  +G   D  T
Sbjct: 445 QGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVT 503

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++I+I+   K+G+++ A   L+ M   GF  ++  ++ ++      G+I+  + +   M 
Sbjct: 504 YSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMI 563

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
            K+    S ++  L  +    +  K LL  L 
Sbjct: 564 TKNIALDSKIISTLSTSLVASNEGKALLQSLP 595



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 10/185 (5%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYT 187
           L EAT  ++ + +     D VSYNT++   C+ G  + A  LL  M  +       +  +
Sbjct: 61  LGEATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---- 243
           +T+L+  LC       A   L  M   G  +++  Y  ++  L    ++D A+ +     
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           ES    +   YSS++   CK+ R     K+ +   + G+         ++D L   G  +
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAK 237

Query: 304 EAKKI 308
           +A  +
Sbjct: 238 KAHGV 242


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 143/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++GLCK+    ++  +F  +Q  G  P +VTYN +I G C +GR   A+
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +   +PN +TY  ++    +  K+    E+   M  +G   +   Y ++I  F
Sbjct: 309 RLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 368

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A D    M T G   D+ ++ TLI+ YC   +++    LL EM ++G   + 
Sbjct: 369 CKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANT 428

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G C  G++  A    + M   G   ++   N ++D L  +GK+  A+ +F++
Sbjct: 429 VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKA 488

Query: 246 ME--------------------------------------------------VKDSFTYS 255
           M+                                                  V D+ TYS
Sbjct: 489 MQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYS 548

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM+  LCK  RL  A+++ +S
Sbjct: 549 SMIDGLCKQSRLDEATQMFVS 569



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 149/315 (47%), Gaps = 5/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++NGLC+      A+ +   + ++G  P+ +TY   + G+CK G   +A  +
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239

Query: 68  LKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L+++ +  H  PN + Y+ I+    ++ ++     +   M+ KG   +   Y  +I  F 
Sbjct: 240 LRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFC 299

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             GR   A   +++M+   +  ++V+YN LIN + KEGK   A  L DEM  +G   +  
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  +IDG CK   +  A      M   G   ++  +  ++D      +ID  + +   M
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                V ++ TY++++H  C    L +A  L    + SGV         ++DGL  +G  
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479

Query: 303 REAKKIQSKIRMAKI 317
           ++A ++   ++ +K+
Sbjct: 480 KDALEMFKAMQKSKM 494



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 15/297 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T+N M++G CK    D A  MF  +   G  P++ T+  LI G C A R
Sbjct: 349 MLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKR 408

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+   G   N +TY T++            L++   M   G   D     T
Sbjct: 409 IDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 468

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             +GV+ D+++YN LI     EGK   A
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 528

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T++ +IDGLCK   +  A      M    F  N+  +N +++ 
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             K G++D  + +F  M     V D+  Y ++++   K   +  A  +    + SGV
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 137/283 (48%), Gaps = 11/283 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +L+GLC +     AL +F  + +    P+++T+  L+ GLC+ GR+  A 
Sbjct: 147 LHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR----PDVLTFTTLMNGLCREGRVVEAV 202

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-YCTVIAA 124
            +L  + ++G  P+ ITY T +    +       L +L  M+   +       Y  +I  
Sbjct: 203 ALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDG 262

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR  ++ +   +M   G+  +IV+YN +I  +C  G+  AA  LL EM ++    +
Sbjct: 263 LCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPN 322

Query: 185 KYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
             T+  LI+   K G   + A L+ E + + G   N   YN ++D   K  ++D A ++F
Sbjct: 323 VVTYNALINAFVKEGKFFEAAELYDEMLPR-GIIPNTITYNSMIDGFCKQDRLDAAEDMF 381

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             M  K    D FT+++++   C AKR+    +LL    + G+
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 424



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 91/177 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI++ GL        A  ++  +   G VP+ +TY+ +I GLCK  RL  A 
Sbjct: 505 VEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 564

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +G    +PN +T+ T++    +  +   GLE+   M R+G   D   Y T+I  F
Sbjct: 565 QMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 624

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            K+G +  A D  ++M++ GV  D ++   ++  +  + +LE A  +L+++++   E
Sbjct: 625 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRYQLE 681



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 135/307 (43%), Gaps = 44/307 (14%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN ++  + +    D  + +++ +++     ++ ++ ILIK  C   +L  A   
Sbjct: 79  PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             +L   G  P+ +T+TT++     + +    L++   + R     D   + T++    +
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRP----DVLTFTTLMNGLCR 194

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLIN----------------------------- 158
            GR+ EA   +++MV +G+Q D ++Y T ++                             
Sbjct: 195 EGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVV 254

Query: 159 LY-------CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y       CK+G+   ++ L  EM+ +G   +  T+  +I G C +G    A+  L+ M
Sbjct: 255 IYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEM 314

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            +     N+  YN +++   K+GK   A  +++ M     + ++ TY+SM+   CK  RL
Sbjct: 315 LERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRL 374

Query: 268 PSASKLL 274
            +A  + 
Sbjct: 375 DAAEDMF 381



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 46/299 (15%)

Query: 60  RLRTARWILKELGD----------SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           +LR+  + +K L D          S   P+ I +  +M    R  +  L + +   M+RK
Sbjct: 51  KLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERK 110

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI------------ 157
               D + +  +I  F    +L  A     ++   G+  D+V++ TL+            
Sbjct: 111 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEA 170

Query: 158 -------------------NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
                              N  C+EG++  A  LLD M + G + D+ T+   +DG+CK 
Sbjct: 171 LDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKM 230

Query: 199 GNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----T 253
           G+   A   L  M +I     N+  Y+ I+D L KDG+   + N+F  M+ K  F    T
Sbjct: 231 GDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVT 290

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           Y+ M+   C + R  +A +LL   L+  +        A+++     G   EA ++  ++
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEM 349



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 90/193 (46%), Gaps = 2/193 (1%)

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +I  L++A D    M+       ++ +N L+    +  + +    L  +ME++   CD Y
Sbjct: 58  EIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIY 117

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           + TILI   C    +  A      + K+G   ++  +  ++  L  D ++  A+++F  +
Sbjct: 118 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI 177

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              D  T++++++ LC+  R+  A  LL   +++G++  +      VDG+   G    A 
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 307 KIQSKIRMAKISH 319
            +  K  M +ISH
Sbjct: 238 NLLRK--MEEISH 248


>gi|449458001|ref|XP_004146736.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial-like [Cucumis sativus]
          Length = 920

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 150/294 (51%), Gaps = 1/294 (0%)

Query: 4   GDLTPC-TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
            +L P  T  + +++ G C     D A  +F  ++ +G VP+  TY +LI G CK   L+
Sbjct: 279 AELFPIDTYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCKKLNLQ 338

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +   +   G   N +  + I++C  R + Y   +      + KG   D   Y  V+
Sbjct: 339 KALSLHSLMLSKGIKSNCVIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLDNVVYNIVV 398

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            A  ++G+L+EA + +E+M +  +Q+D++ Y T+I     +GK+  A ++ + ++K G E
Sbjct: 399 HALCELGKLEEAIELLEEMTSRQIQMDVMHYTTMIKGLFAQGKIHEAMMMFENLKKNGVE 458

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+++L  G  + G +   +  L+YM + G   + +  + I++ L   GK+  A  +
Sbjct: 459 PDSITYSVLAAGFSRNGLVSKVQDLLDYMEEHGLRKDPKMPDLIIENLCIGGKVKEATEI 518

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           F S+EVK    Y++M++  C A    SA KL ++  K G+ I +S+   +V  L
Sbjct: 519 FNSLEVKTVDNYAAMINGYCAASDTKSAYKLFVNLSKEGIFIRRSSLVRLVSRL 572



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 144/353 (40%), Gaps = 39/353 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T N +LN L ++   + AL ++  L++ G  P   TY  +IKGLCK G++  A 
Sbjct: 177 FVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRFGCQPNDYTYATVIKGLCKIGKMEKAI 236

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I +E+   G  PNA      ++    +     G ++L A + + +  D + Y  VI  F
Sbjct: 237 DIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSGYQLLQAWRAELFPIDTYAYTVVIRGF 296

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG----- 180
               ++ EA      M   GV  D  +Y  LIN YCK+  L+ A  L   M  +G     
Sbjct: 297 CDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCKKLNLQKALSLHSLMLSKGIKSNC 356

Query: 181 ------FEC------------------------DKYTHTILIDGLCKAGNIKGARLHLEY 210
                  +C                        D   + I++  LC+ G ++ A   LE 
Sbjct: 357 VIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLDNVVYNIVVHALCELGKLEEAIELLEE 416

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M       ++  Y  ++  L   GKI  A+ +FE+++      DS TYS +     +   
Sbjct: 417 MTSRQIQMDVMHYTTMIKGLFAQGKIHEAMMMFENLKKNGVEPDSITYSVLAAGFSRNGL 476

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319
           +     LL    + G+R        +++ L   G  +EA +I + + +  + +
Sbjct: 477 VSKVQDLLDYMEEHGLRKDPKMPDLIIENLCIGGKVKEATEIFNSLEVKTVDN 529



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 7/169 (4%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            +N ++  LC+ +    A  +F  L + G +P+L+TY ++I G CK   LR A  +L ++
Sbjct: 599 VYNKVIASLCRVKNMKMAQCLFDCLVRAGLIPDLITYTMMINGYCKINYLREAYELLCDM 658

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYK-------LGLEILSAMKRKGYTFDGFGYCTVIAA 124
            + G  P+   YT ++   F+    K       L   I + MK    T D   Y  +I  
Sbjct: 659 RNRGREPDIFVYTVLLDGGFKTSLQKCSSVEIALTSSIFNEMKDMKITPDVVYYTVLIDG 718

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           + K+  L +A    E+MV  G++ D V+Y  L++  C+ G  E A  L 
Sbjct: 719 YCKMNNLNDAFVLFEEMVDQGIEADAVTYTALLSSCCRNGYKEKAQTLF 767



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 6/242 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+ + +   L + GFVP + T N L+  L + G++  A  + ++L   G  PN  TY T+
Sbjct: 163 DSVVDLLFRLGRKGFVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRFGCQPNDYTYATV 222

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +K   +  K +  ++I   M   G   + F     I A             ++    +  
Sbjct: 223 IKGLCKIGKMEKAIDIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSGYQLLQAWRAELF 282

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-R 205
            +D  +Y  +I  +C E K++ A  +  +ME  G   D  T+ +LI+G CK  N++ A  
Sbjct: 283 PIDTYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCKKLNLQKALS 342

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
           LH   ++K G  SN    + I+    +       +N F+  + K    D+  Y+ +VH L
Sbjct: 343 LHSLMLSK-GIKSNCVIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLDNVVYNIVVHAL 401

Query: 262 CK 263
           C+
Sbjct: 402 CE 403



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 97/235 (41%), Gaps = 7/235 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           M+NG C    T +A ++F  L K G      +   L+  LC       A  ++K+L    
Sbjct: 533 MINGYCAASDTKSAYKLFVNLSKEGIFIRRSSLVRLVSRLCMENSSFRAIEVMKQLPVMN 592

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
                I Y  ++    R +  K+   +   + R G   D   Y  +I  + KI  L+EA 
Sbjct: 593 VEAKEIVYNKVIASLCRVKNMKMAQCLFDCLVRAGLIPDLITYTMMINGYCKINYLREAY 652

Query: 136 DYMEQMVTDGVQLDIVSYNTLIN-------LYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           + +  M   G + DI  Y  L++         C   ++     + +EM+      D   +
Sbjct: 653 ELLCDMRNRGREPDIFVYTVLLDGGFKTSLQKCSSVEIALTSSIFNEMKDMKITPDVVYY 712

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           T+LIDG CK  N+  A +  E M   G +++   Y  ++    ++G  + A  +F
Sbjct: 713 TVLIDGYCKMNNLNDAFVLFEEMVDQGIEADAVTYTALLSSCCRNGYKEKAQTLF 767



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 17/262 (6%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           ++++  LC       A  +F  L+    V  +  Y  +I G C A   ++A  +   L  
Sbjct: 500 DLIIENLCIGGKVKEATEIFNSLE----VKTVDNYAAMINGYCAASDTKSAYKLFVNLSK 555

Query: 74  SG-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            G     +     + + C  N  ++  +E++  +           Y  VIA+  ++  +K
Sbjct: 556 EGIFIRRSSLVRLVSRLCMENSSFR-AIEVMKQLPVMNVEAKEIVYNKVIASLCRVKNMK 614

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A    + +V  G+  D+++Y  +IN YCK   L  AY LL +M  +G E D + +T+L+
Sbjct: 615 MAQCLFDCLVRAGLIPDLITYTMMINGYCKINYLREAYELLCDMRNRGREPDIFVYTVLL 674

Query: 193 DG-------LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           DG        C +  I         M  +    ++  Y  ++D   K   ++ A  +FE 
Sbjct: 675 DGGFKTSLQKCSSVEIALTSSIFNEMKDMKITPDVVYYTVLIDGYCKMNNLNDAFVLFEE 734

Query: 246 MEVK----DSFTYSSMVHNLCK 263
           M  +    D+ TY++++ + C+
Sbjct: 735 MVDQGIEADAVTYTALLSSCCR 756



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 34/308 (11%)

Query: 10  TATFNIMLNGLCK-----------NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           T++FN  LN  CK            R    A   F  L++ GF   + TY  LI+ LC  
Sbjct: 46  TSSFNTSLNVQCKPSKVVQVLESLRREPKIAFSFFCELEERGFQHNISTYAALIRILCSW 105

Query: 59  GRLRTARWILKELGDSGHAPNAI-------------------TYTTIMKCCFRNRKYKLG 99
           G  R    +   L  S      +                    Y  ++K       +   
Sbjct: 106 GLGRKLETLFLNLIGSKKVEFDVLDLIESLNQGCVVDASFIRVYDALIKAYVSVNLFDSV 165

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           +++L  + RKG+    F    ++   ++ G++  A    EQ+   G Q +  +Y T+I  
Sbjct: 166 VDLLFRLGRKGFVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRFGCQPNDYTYATVIKG 225

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CK GK+E A  + +EM   G   + +     I+ LC           L+      F  +
Sbjct: 226 LCKIGKMEKAIDIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSGYQLLQAWRAELFPID 285

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
             AY  ++     + KID A +VF  ME    V D+ TY  +++  CK   L  A  L  
Sbjct: 286 TYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCKKLNLQKALSLHS 345

Query: 276 SCLKSGVR 283
             L  G++
Sbjct: 346 LMLSKGIK 353


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 155/345 (44%), Gaps = 39/345 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P       ++ GLCK     +A+ ++  L + GF   LVT N LI GLCK G 
Sbjct: 514 MLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGN 573

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +LK++ + G   + ITY T++  C +  K + G ++   M ++G   D F Y  
Sbjct: 574 MQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNL 633

Query: 121 VIAAFVKIGRLKEATDYME-----------------------------------QMVTDG 145
           +I    +IG+L EA +                                      +++T  
Sbjct: 634 LIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN 693

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++L+ V YNTLI  YC+ G    A+ L D+M  +G      T++ LI G+C  G ++ A+
Sbjct: 694 LELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAK 753

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNL 261
             ++ M K G   N+  Y  ++    K G++D  +NV + M   D      TY+ M+   
Sbjct: 754 CLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGY 813

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            K+  + +A+KLL   +  G+         + +G    G   E K
Sbjct: 814 SKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGK 858



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 9/305 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P    F+  +N  CK    ++A+++F  ++K G  P +VTYN LI GLCK G L  A 
Sbjct: 309 VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAF 368

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +++   G     ITY+ ++    +  K+     +L     KG+T +   Y T+I  +
Sbjct: 369 RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGY 428

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G L +A      MV+ G+  + V+ N++I  +CK G++E A  +L+EM  +GF  + 
Sbjct: 429 CKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINP 488

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              T +I  LC     + A   L  M       N      +V  L K+GK   A+ ++  
Sbjct: 489 GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFR 548

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           +  K    +  T ++++H LCK   +  A +LL   L+ G  + K     ++     SGC
Sbjct: 549 LLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI-----SGC 603

Query: 302 RREAK 306
            +E K
Sbjct: 604 CKEGK 608



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 149/352 (42%), Gaps = 76/352 (21%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            TP    +N +++G CK     +ALR+   +   G  P  VT N +I+G CK G++  A 
Sbjct: 414 FTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAE 473

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK------------------ 107
            IL+E+   G + N   +TTI+     N +++  L  L  M                   
Sbjct: 474 CILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGL 533

Query: 108 -RKGYTFD-----------GFGYCTV-----IAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            ++G   D           GFG   V     I    K G ++EA   +++M+  G  LD 
Sbjct: 534 CKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK 593

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK------------------------- 185
           ++YNTLI+  CKEGK+E  + L  EM KQG E D                          
Sbjct: 594 ITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNE 653

Query: 186 ----------YTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                     YT+ ++IDG CKA  I +G +L  E + +   + N   YN ++    ++G
Sbjct: 654 CKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ-NLELNSVVYNTLIRAYCRNG 712

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
               A  + + M  K     + TYSS++H +C   R+  A  L+    K G+
Sbjct: 713 NTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL 764



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 143/317 (45%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P + T N ++ G CK    + A  +   +   GF      +  +I  LC   R
Sbjct: 444 MVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSR 503

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             +A   L+E+      PN    TT++    +  K+   +E+   +  KG+  +      
Sbjct: 504 FESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA 563

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G ++EA   +++M+  G  LD ++YNTLI+  CKEGK+E  + L  EM KQG
Sbjct: 564 LIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG 623

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D +T+ +LI G+C+ G +  A              N+  Y  ++D   K  KI+   
Sbjct: 624 IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGE 683

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  +  +    +S  Y++++   C+      A KL       G+    +   +++ G+
Sbjct: 684 KLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGM 743

Query: 297 RHSGCRREAKKIQSKIR 313
            + G   +AK +  ++R
Sbjct: 744 CNIGRMEDAKCLIDEMR 760



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           NA+ +FR L   G  P + T   L+  L KA  L  + W+ + +   G +P+   ++T +
Sbjct: 262 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM-RQGVSPDVYLFSTAI 320

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
               +  K +  +++   M++ G + +   Y  +I    K G L EA  + E+MV DGV 
Sbjct: 321 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN 380

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RL 206
             +++Y+ LIN   K  K   A  +L E  ++GF  ++  +  LIDG CK GN+  A R+
Sbjct: 381 ATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRI 440

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
             + ++K G + N    N I+    K G+++ A  + E M  +    +   +++++H LC
Sbjct: 441 RGDMVSK-GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC 499

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
              R  SA + L   L   +R        +V GL   G   +A ++  ++
Sbjct: 500 MNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRL 549



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 135/309 (43%), Gaps = 5/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   +L+ L K    + +  +F  + + G  P++  ++  I   CK G++  A  +
Sbjct: 277 PTVKTCTFLLSSLVKANELEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQL 335

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G +PN +TY  ++    ++            M + G       Y  +I   +K
Sbjct: 336 FFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMK 395

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + +  EA   +++ +  G   + V YNTLI+ YCK G L  A  +  +M  +G   +  T
Sbjct: 396 LEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVT 455

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              +I G CK G ++ A   LE M   GF  N  A+  I+  L  + + + A+     M 
Sbjct: 456 LNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREML 515

Query: 248 VKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +++        +++V  LCK  +   A +L    L+ G         A++ GL  +G  +
Sbjct: 516 LRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQ 575

Query: 304 EAKKIQSKI 312
           EA ++  K+
Sbjct: 576 EAVRLLKKM 584



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 37/255 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T+N++++G+C+    D A+ ++   +    VP + TY ++I G CKA +
Sbjct: 619 MVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADK 678

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +  EL       N++ Y T+++   RN       ++   M+ KG       Y +
Sbjct: 679 IEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSS 738

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE------------- 167
           +I     IGR+++A   +++M  +G+  ++V Y  LI  YCK G+++             
Sbjct: 739 LIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYD 798

Query: 168 ----------------------AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                                  A  LL EM  +G   D  T+ +L +G CK G I+  +
Sbjct: 799 IHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGK 858

Query: 206 LHLEYMNKIGFDSNL 220
           L  E  + +GF+S L
Sbjct: 859 LLAE--DGVGFNSPL 871


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 141/282 (50%), Gaps = 10/282 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P  AT+N++++GLCK     +AL++F  + + G  P + T+ IL+  +C AG+
Sbjct: 200 MVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQ 259

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF-GYC 119
           L+ A  +L  + D G  P+ +TY   +    +  +    +E L A++R G    G  GY 
Sbjct: 260 LKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYS 319

Query: 120 TVIAAFVKIGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            +I      GR +E    YME +       DIV Y  +I    + G+++ A+   DEM++
Sbjct: 320 CLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKE 379

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYM--NKIGFDSNLEAYNCIVDRLGKDGKI 236
           + F  D + +  L+  LC +G++ GAR  +  M  N +  D+N   +  ++  L K   +
Sbjct: 380 KRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTN--THTIMIHGLCKKQLV 437

Query: 237 DHAINVFESM-EV---KDSFTYSSMVHNLCKAKRLPSASKLL 274
           D A+ VF+ M EV       TY+ ++  L +A RL  A  L 
Sbjct: 438 DEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLF 479



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 22/234 (9%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T  IM++GLCK +  D A+++F G+ + G  P ++TYN+LI GL +A RL  AR +  
Sbjct: 421 TNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFY 480

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++ + G+ P+     T                 L A + K    D      ++ +  + G
Sbjct: 481 KM-EVGNNPSLFLRLT-----------------LGANQVK----DSESLQKLVDSMCQSG 518

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++ +A   +  ++  GV  D+V+YNTL+N  CK   L+ A  L  E++ +GF  D+ T+ 
Sbjct: 519 QVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYG 578

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
            LID L +A     A    + +  IG   +L  YN I+  L +  K+  AIN +
Sbjct: 579 TLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIYNSIMRSLCRMNKLSQAINFW 632



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 143/314 (45%), Gaps = 7/314 (2%)

Query: 8   PCTATFNIMLNGLCKNR-YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P T  +N +L  L  +      AL ++  +   G +P   TYN+L+ GLCK G    A  
Sbjct: 171 PTTFVYNAVLRVLVASGGVVPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALK 230

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  E+   G  PN  T+T ++       + K    +L++M+ KG   D   Y   ++   
Sbjct: 231 LFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLC 290

Query: 127 KIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYL-LLDEMEKQGFECD 184
           K GR+ EA + +E +   G   L +  Y+ LI+     G+ E  +   ++ +E+  F  D
Sbjct: 291 KAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPD 350

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              +TI+I G  +AG I  A    + M +  F  +   YN ++  L   G +D A ++  
Sbjct: 351 IVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMS 410

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M     V D+ T++ M+H LCK + +  A ++    ++ G          ++DGL  + 
Sbjct: 411 EMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAH 470

Query: 301 CRREAKKIQSKIRM 314
              EA+ +  K+ +
Sbjct: 471 RLEEARMLFYKMEV 484



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 134/312 (42%), Gaps = 21/312 (6%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            D +P    + IM+ G  +    D+A   F  +++  F P+   YN L+K LC +G L  
Sbjct: 345 ADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDG 404

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           AR ++ E+  +    +  T+T ++    + +     +++   M   G       Y  +I 
Sbjct: 405 ARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLID 464

Query: 124 AFVKIGRLKEATDYMEQM-VTDGVQL------------DIVSYNTLINLYCKEGKLEAAY 170
              +  RL+EA     +M V +   L            D  S   L++  C+ G++  AY
Sbjct: 465 GLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAY 524

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDR 229
            LL  +   G   D  T+  L++GLCK  N+ GA RL  E   K GF  +   Y  ++D 
Sbjct: 525 KLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVK-GFSLDEITYGTLIDS 583

Query: 230 LGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
           L +  + + A+ +F+ +           Y+S++ +LC+  +L  A       L     + 
Sbjct: 584 LLRAHRYNDAMTLFQDILHIGGTPSLSIYNSIMRSLCRMNKLSQAINFWFDHLLKKYNL- 642

Query: 286 KSAQKAVVDGLR 297
            SAQ  V+   R
Sbjct: 643 -SAQDEVIASAR 653



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 118/268 (44%), Gaps = 15/268 (5%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +++ +C++     A ++ RG+   G VP++VTYN L+ GLCK   L  A  + +EL   G
Sbjct: 510 LVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKG 569

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            + + ITY T++    R  +Y   + +   +   G T     Y +++ +  ++ +L +A 
Sbjct: 570 FSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIYNSIMRSLCRMNKLSQAI 629

Query: 136 ----DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
               D++ +      Q ++++         +EG L+ A   L +++++    +   +TI 
Sbjct: 630 NFWFDHLLKKYNLSAQDEVIAS---ARKKFEEGSLDEAVRELIKIDQEYGSVNSCPYTIW 686

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFD------SNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + GL +A  I  A      + + G D      ++L  Y C    L  D  +D  +     
Sbjct: 687 LIGLIQARRIDDALKIFHILEESGIDITPACCAHLSKYLCWEKNL--DSAVDVMLYTLNK 744

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKL 273
             +      + ++ +LC   R   A  L
Sbjct: 745 RFIMSRHVGNRLLSSLCIRHRRKDAQAL 772


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 137/273 (50%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  ++NGL K      A+ +F  +   G  P+  TY  +I GLCK G    A 
Sbjct: 41  LQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAA 100

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K++ ++G   N +TY+T++    + R+    L+I S MK K  +   F Y ++I   
Sbjct: 101 GLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGL 160

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               R KEA+  + +M +  +  ++V++N L++ +CKEGK+ AA  +L  M + G E D 
Sbjct: 161 CNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDV 220

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+ G      +  AR   + M   G   ++ +Y+ +++   K  +ID A  +F  
Sbjct: 221 VTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNE 280

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M       ++ +Y++++H LC+  RL  A  L 
Sbjct: 281 MIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLF 313



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 51/315 (16%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D++P   T+  ++ GLC       A  +   +     +P +VT+N+L+   CK G++  A
Sbjct: 145 DISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAA 204

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA------MKRKGYTFDGFGY 118
             +LK + + G  P+ +TY ++M        Y +  E++ A      M  KG   D F Y
Sbjct: 205 EGVLKTMTEMGVEPDVVTYNSLM------YGYSMWTEVVEARKLFDVMITKGCKPDVFSY 258

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +I  + K  R+ EA     +M+  G   + VSYNTLI+  C+ G+L  A  L   M  
Sbjct: 259 SILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHT 318

Query: 179 QGFECDKYTHTILIDG-----------------------------------LCKAGNIKG 203
            G   + YT+ IL+DG                                   +CK+GN+K 
Sbjct: 319 NGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKD 378

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVH 259
           AR     +  IG   N++ Y  I++ L K+G +D A+  F +ME      D F+Y+ ++ 
Sbjct: 379 ARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIR 438

Query: 260 NLCKAKRLPSASKLL 274
              + K    A  L+
Sbjct: 439 GFLQHKDESRAVHLI 453



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 4/299 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T++ +++ LCK R  + AL +F  ++     P + TY  LI+GLC   R + A  +L E
Sbjct: 116 VTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNE 175

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +      PN +T+  ++    +  K      +L  M   G   D   Y +++  +     
Sbjct: 176 MTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTE 235

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + EA    + M+T G + D+ SY+ LIN YCK  +++ A  L +EM  QG   +  ++  
Sbjct: 236 VVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNT 295

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248
           LI GLC+ G ++ A+   + M+  G   NL  Y  ++D   K G +  A  +F +M+   
Sbjct: 296 LIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTY 355

Query: 249 --KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              +   Y+ +V+ +CK+  L  A +L       G++        +++GL   G   EA
Sbjct: 356 LKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEA 414



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 140/307 (45%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P T T NI++N  C+ +  D    +     K G  P +VT+  LI GL K G+   A 
Sbjct: 6   LSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAV 65

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  P+  TYTTI+    +  +  L   +   M+  G   +   Y T+I + 
Sbjct: 66  ELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSL 125

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ EA D    M    +   I +Y +LI   C   + + A  LL+EM       + 
Sbjct: 126 CKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNV 185

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  +L+D  CK G +  A   L+ M ++G + ++  YN ++       ++  A  +F+ 
Sbjct: 186 VTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDV 245

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D F+YS +++  CKAKR+  A +L    +  G      +   ++ GL   G 
Sbjct: 246 MITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGR 305

Query: 302 RREAKKI 308
            REA+ +
Sbjct: 306 LREAQDL 312



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 99/197 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   +++I++NG CK +  D A ++F  +   G  P  V+YN LI GLC+ GR
Sbjct: 246 MITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGR 305

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR A+ + K +  +G+ PN  TY  ++    +         +  AM+      +   Y  
Sbjct: 306 LREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNI 365

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K G LK+A +   ++   G+Q ++  Y T+IN  CKEG L+ A      ME  G
Sbjct: 366 LVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDG 425

Query: 181 FECDKYTHTILIDGLCK 197
              D++++ ++I G  +
Sbjct: 426 CPPDEFSYNVIIRGFLQ 442



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 75/180 (41%), Gaps = 35/180 (19%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ I+L+G CK  Y   A R+FR +Q     P LV YNIL+  +CK+G L+ AR +
Sbjct: 323 PNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDAREL 382

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             EL   G  PN   YTTI+                             G C       K
Sbjct: 383 FSELFVIGLQPNVQIYTTIIN----------------------------GLC-------K 407

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L EA +    M  DG   D  SYN +I  + +      A  L+ EM  +GF  D  T
Sbjct: 408 EGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +NI++N +CK+    +A  +F  L   G  P +  Y  +I GLCK G L  A 
Sbjct: 356 LKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEAL 415

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
              + + D G  P+  +Y  I++   +++     + ++  M+ +G+  D 
Sbjct: 416 EAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDA 465



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  ++NGLCK    D AL  FR ++  G  P+  +YN++I+G  +      A 
Sbjct: 391 LQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAV 450

Query: 66  WILKELGDSGHAPNAIT 82
            ++ E+ D G   +A T
Sbjct: 451 HLIGEMRDRGFITDAGT 467


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 161/382 (42%), Gaps = 74/382 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T NIM++ LCK +  D A  +F G+      P+ VT+  LI GL K GR+  A 
Sbjct: 438 LFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAY 497

Query: 66  WILKELGDSGHAPNAITYTTIMK-----------------------------------CC 90
            + +++ DS   PNA+ YT+++K                                   C 
Sbjct: 498 RLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCV 557

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           F+  +   G  +   +K +G+  D   Y  +I   VK G  +E  +    M   G  LD 
Sbjct: 558 FKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDT 617

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQ------------------------------- 179
            +YNT I+ +CK GK+  AY LL+EM+ +                               
Sbjct: 618 HAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEE 677

Query: 180 ----GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
               G E +   ++ LIDG  K G I  A L +E + + G   N+  +NC++D L K  +
Sbjct: 678 AKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 737

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           I+ A+  F++M+      +  TYS +++ LC+ ++   A        K G++        
Sbjct: 738 INEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTT 797

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           ++ GL  +G   EA  +  + +
Sbjct: 798 MIAGLAKAGNIAEASSLFERFK 819



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 160/318 (50%), Gaps = 4/318 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P     N  ++ + K   T     +F  ++  GF+P++++Y+ILI GL KAG 
Sbjct: 538 MIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGF 597

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R    +   + + G   +   Y T +    ++ K     ++L  MK KG       Y +
Sbjct: 598 ARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGS 657

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    KI RL EA    E+  ++G++L++V Y++LI+ + K G+++ AYL+++E+ ++G
Sbjct: 658 VIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 717

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + YT   L+D L KA  I  A +  + M  +    N   Y+ +++ L +  K + A 
Sbjct: 718 LTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAF 777

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             ++ M+ +    ++ TY++M+  L KA  +  AS L      +G     ++  A+++GL
Sbjct: 778 VFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGL 837

Query: 297 RHSGCRREAKKIQSKIRM 314
            +S    EA KI  + RM
Sbjct: 838 SYSRRAMEAYKIFEETRM 855



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 122/279 (43%), Gaps = 35/279 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   +++I+++GL K  +      +F  +++ G V +   YN  I G CK+G++  A 
Sbjct: 578 FIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAY 637

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+   G  P  +TY +++    +  +      +    K  G   +   Y ++I  F
Sbjct: 638 QLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGF 697

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDI----------------------------------- 150
            K+GR+ EA   ME+++  G+  ++                                   
Sbjct: 698 GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNH 757

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           ++Y+ LIN  C+  K   A++   EM+KQG + +  T+T +I GL KAGNI  A    E 
Sbjct: 758 ITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFER 817

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
               G   +  +YN I++ L    +   A  +FE   +K
Sbjct: 818 FKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMK 856



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 144/344 (41%), Gaps = 40/344 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +L  L K      ALR F  ++K    P L TYN+LI  LCKAG +  A  +
Sbjct: 371 PSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-APNLSTYNVLIDMLCKAGEVEAAFKV 429

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + ++G  PN +T   ++    + +K      I   M  K  + D   +C++I    K
Sbjct: 430 RDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGK 489

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE-------------------- 167
            GR+ +A    EQM+      + V Y +LI  + K G+ E                    
Sbjct: 490 QGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRL 549

Query: 168 -AAYL--------------LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
             AY+              L +E++ +GF  D  +++ILI GL KAG  +        M 
Sbjct: 550 LNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMK 609

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLP 268
           + G   +  AYN  +D   K GK++ A  + E M+ K       TY S++  L K  RL 
Sbjct: 610 EQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLD 669

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            A  L      +G+ +      +++DG    G   EA  I  ++
Sbjct: 670 EAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 713



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 134/308 (43%), Gaps = 40/308 (12%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D   C   ++ +L  + KN   D   ++   +   GF P   T   LI    K+ +LR  
Sbjct: 123 DQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREG 182

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +++ +      P    YTT++      ++  + L +   M+  GY      + TVI  
Sbjct: 183 FDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRV 242

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F + GRL  A   +++M ++ +  DIV YN  I+ + K GK++ A+    E++  G   D
Sbjct: 243 FAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPD 302

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNK--------------IGFDS------------ 218
             T+T +I  LCK   +  A    E M +              +G+ S            
Sbjct: 303 DVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLE 362

Query: 219 ---------NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAK 265
                    ++ AYNCI+  LGK G++  A+  FE M+ KD+     TY+ ++  LCKA 
Sbjct: 363 RQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMK-KDAAPNLSTYNVLIDMLCKAG 421

Query: 266 RLPSASKL 273
            + +A K+
Sbjct: 422 EVEAAFKV 429



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 9/268 (3%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQK---HGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           ++++  L + +  + A+  FR  ++       PE   Y+ L+  + K  +      IL E
Sbjct: 96  DLVIGVLRRAKDVNQAISYFRWTERKTDQALCPE--AYDSLLLVMAKNVKFDYFEQILGE 153

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  +G  P+  T   ++  C ++ K + G +++  M++  +      Y T+I A   +  
Sbjct: 154 MSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQE 213

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
                    QM   G ++ +  + T+I ++ +EG+L+AA  LLDEM+      D   + +
Sbjct: 214 SDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNV 273

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
            ID   KAG +  A      +   G   +   Y  ++  L K  ++D A+ +FE ME   
Sbjct: 274 CIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNR 333

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            V  ++ Y++M+     A +   A  LL
Sbjct: 334 NVPCAYAYNTMIMGYGSAGKFDEAYSLL 361



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 4/234 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GL K    D A  +F   + +G    +V Y+ LI G  K GR+  A  I
Sbjct: 650 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLI 709

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++EL   G  PN  T+  ++    +  +    L     MK    T +   Y  +I    +
Sbjct: 710 MEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCR 769

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + +  +A  + ++M   G++ + ++Y T+I    K G +  A  L +  +  G   D  +
Sbjct: 770 VRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSAS 829

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI--VDRLGKDGKIDHA 239
           +  +I+GL  +     A    E     G   N+    CI  +D L KD  ++ A
Sbjct: 830 YNAIIEGLSYSRRAMEAYKIFEETRMKG--CNIHTKTCIALLDALQKDECLEQA 881



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 55/104 (52%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T++I++NGLC+ R  + A   ++ +QK G  P  +TY  +I GL KAG +  A  
Sbjct: 754 TPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASS 813

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           + +    +G  P++ +Y  I++    +R+     +I    + KG
Sbjct: 814 LFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKG 857


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 153/317 (48%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +N +++GLCKN   + AL +   ++K G   ++VTYN L+ GLC +GR
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGR 226

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L+++      P+ +T+T ++    +        E+   M +     +   Y +
Sbjct: 227 WSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      GRL +A    + M + G   ++V+YNTLI+ +CK   ++    L   M  +G
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D +T+  LI G C+ G ++ A     +M       ++  +  ++  L  +G+I+ A+
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESAL 406

Query: 241 NVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             F+ M   + +     Y+ M+H LCKA ++  A +L       GV+        ++ GL
Sbjct: 407 VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGL 466

Query: 297 RHSGCRREAKKIQSKIR 313
             +G RREA ++  +++
Sbjct: 467 CKNGPRREADELIRRMK 483



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 133/263 (50%), Gaps = 4/263 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F I+++  C+      AL +   + K G+ P +VT+  L+ G C   R+  A  ++  +
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG+ PN + Y T++    +N +  + LE+L+ M++KG   D   Y T++      GR 
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A   +  M+   +  D+V++  LI+++ K+G L+ A  L  EM +   + +  T+  +
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSI 287

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I+GLC  G +  A+   + M   G   N+  YN ++    K   +D  + +F+ M  +  
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 250 --DSFTYSSMVHNLCKAKRLPSA 270
             D FTY++++H  C+  +L  A
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVA 370



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 143/300 (47%), Gaps = 8/300 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+N +L GLC +    +A RM R + K    P++VT+  LI    K G L  A+ + K
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYK 270

Query: 70  ELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           E+  S   PN +TY +I+   C   R Y    +    M  KG   +   Y T+I+ F K 
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYD-AKKTFDLMASKGCFPNVVTYNTLISGFCKF 329

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
             + E     ++M  +G   DI +YNTLI+ YC+ GKL  A  +   M  +    D  TH
Sbjct: 330 RMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITH 389

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            IL+ GLC  G I+ A +  + M +      + AYN ++  L K  K++ A  +F  + V
Sbjct: 390 CILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPV 449

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           +    D+ TY+ M+  LCK      A +L+    + G+    +A+   ++   HS   +E
Sbjct: 450 EGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLE--EHSSSNKE 507



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 121/250 (48%), Gaps = 4/250 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++A  +F  +     +P +V +  L+       R  T  +  +++   G + +  ++T +
Sbjct: 53  EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTIL 112

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C  R  +    L +L  M + GY      + +++  F  + R+ +A   +  MV  G 
Sbjct: 113 IHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGY 172

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + ++V YNTLI+  CK G+L  A  LL+EMEK+G   D  T+  L+ GLC +G    A  
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLC 262
            L  M K   + ++  +  ++D   K G +D A  +++ M       ++ TY+S+++ LC
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC 292

Query: 263 KAKRLPSASK 272
              RL  A K
Sbjct: 293 MHGRLYDAKK 302



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N ++NGLC +    +A + F  +   G  P +VTYN LI G CK   
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRM 331

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + + +   G   +  TY T++    +  K ++ L+I   M  +  T D   +C 
Sbjct: 332 VDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCI 391

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G ++ A    + M      + IV+YN +I+  CK  K+E A+ L   +  +G
Sbjct: 392 LLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEG 451

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
            + D  T+TI+I GLCK G  + A   +  M + G    + A
Sbjct: 452 VKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA 493



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 4/258 (1%)

Query: 54  GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
           G   + R   A  +  E+  S   P+ + +T ++      R+Y+  +     M+  G + 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D + +  +I  F +  RL  A   + +M+  G +  IV++ +L++ +C   ++  A+ L+
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
             M K G+E +   +  LIDGLCK G +  A   L  M K G  +++  YN ++  L   
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224

Query: 234 GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G+   A  +   M  +    D  T+++++    K   L  A +L    ++S V       
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 290 KAVVDGLRHSGCRREAKK 307
            ++++GL   G   +AKK
Sbjct: 285 NSIINGLCMHGRLYDAKK 302


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   LTP   T+N ++N       T+NAL +   ++ +G +P +VTYNILI GLCK G 
Sbjct: 576 MIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGA 635

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+   G+ P  I +  ++K   R+RK    L+I   +   G   +   Y T
Sbjct: 636 IEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNT 695

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    ++G  K+A   + +MV  G+  DIV+YN LI  YC    +E A+    +M   G
Sbjct: 696 LITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSG 755

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  L++GL   G ++ A   +  M + G   N   YN +V   G+ G    +I
Sbjct: 756 ISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSI 815

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ++  M  K     + TY+ ++ +  KA ++  A +LL   L  G     S    ++ G 
Sbjct: 816 KLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICGW 875

Query: 297 RHSGCRREAKKI 308
               C+ E  ++
Sbjct: 876 CKLSCQPEMDRL 887



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 151/308 (49%), Gaps = 4/308 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P   T+  ++   CK+R  D+   ++  +   G +P++VT + ++ GLC+ G+L  A
Sbjct: 231 DLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEA 290

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+E+ + G  PN ++YTTI+    ++ +        S M  +G + D     T++  
Sbjct: 291 AMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDG 350

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+ KEA +  + ++   +  + V+Y  L++ +CK G +E A  +L +MEK+    +
Sbjct: 351 LFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPN 410

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T + +I+G  K G +  A   L  M ++    N+  Y  ++D   + G+ + A   ++
Sbjct: 411 VVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYK 470

Query: 245 SMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+     +++  +  +++NL ++  +  A  L+   L  G+ +      +++DG    G
Sbjct: 471 EMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEG 530

Query: 301 CRREAKKI 308
               A  +
Sbjct: 531 NESAALSV 538



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 153/352 (43%), Gaps = 40/352 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P    + I+L+G  +    + A   ++ ++  G     + ++IL+  L ++G 
Sbjct: 437 MVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGG 496

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ ++K++   G   +   Y+++M   F+       L ++  M  K   FD   Y  
Sbjct: 497 MKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNA 556

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +    +++G+  E      +M+  G+  D V+YN+++N Y  +GK E A  LL+EM+  G
Sbjct: 557 LTKGLLRLGKY-EPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYG 615

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF------------------------ 216
              +  T+ ILI GLCK G I+     L  M  +G+                        
Sbjct: 616 VMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAIL 675

Query: 217 -----------DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
                      + N   YN ++  L + G    A  V   M +K    D  TY++++   
Sbjct: 676 QIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGY 735

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           C    +  A       L SG+    +   A+++GL  +G  R+A K+ S++R
Sbjct: 736 CTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMR 787



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 44/316 (13%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL  CT     M++GL K   +  A  MF+ + K   VP  VTY  L+ G CK G +  A
Sbjct: 340 DLVLCTT----MMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFA 395

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+++      PN +T+++I+    +       +E+L  M +     + F Y  ++  
Sbjct: 396 ETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDG 455

Query: 125 FVKIGR-----------------------------------LKEATDYMEQMVTDGVQLD 149
           + + G+                                   +KEA   ++ +++ G+ LD
Sbjct: 456 YFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLD 515

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           + +Y++L++ Y KEG   AA  ++ EM ++  + D   +  L  GL + G  +   +   
Sbjct: 516 VFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYEPKSV-FS 574

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M ++G   +   YN +++     GK ++A+++   M+    + +  TY+ ++  LCK  
Sbjct: 575 RMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTG 634

Query: 266 RLPSASKLLLSCLKSG 281
            +     +L   L  G
Sbjct: 635 AIEKVISVLHEMLAVG 650



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 148/341 (43%), Gaps = 36/341 (10%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N +L     + +      ++  +   G VP + + N+L+  LCK G L  A 
Sbjct: 6   LVPSLPLWNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLAL 65

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+         + +TY T++    +      G  +LS M +KG  FD      ++  +
Sbjct: 66  GYLRN-----SVFDHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGY 120

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +IG ++ A   M  +V  GV LD +  NTL++ YC+ G +  A  L+++  K G + D 
Sbjct: 121 CQIGLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDI 180

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKI-GF----------DSNLEAYNCIVDRLG--- 231
            T+  L++  CK G++  A      +N+I GF          D  +E ++ + D      
Sbjct: 181 VTYNTLVNAFCKRGDLAKAE---SVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVV 237

Query: 232 ----------KDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
                     K   ID   +++E M     + D  T SS+++ LC+  +L  A+ LL   
Sbjct: 238 TWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREM 297

Query: 278 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
              G+     +   ++  L  SG   EA   QS++ +  IS
Sbjct: 298 YNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGIS 338



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 146/316 (46%), Gaps = 5/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T + +L GLC++     A  + R +   G  P  V+Y  +I  L K+GR
Sbjct: 262 MIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLKSGR 321

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     ++   G + + +  TT+M   F+  K K   E+   + +     +   Y  
Sbjct: 322 VMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTA 381

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K+G ++ A   +++M  + V  ++V+++++IN Y K+G L  A  +L +M +  
Sbjct: 382 LLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMN 441

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + + + IL+DG  + G  + A    + M   G + N   ++ +++ L + G +  A 
Sbjct: 442 IMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQ 501

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++ + +  K    D F YSS++    K     +A  ++    +  ++    A  A+  GL
Sbjct: 502 SLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGL 561

Query: 297 RHSGCRREAKKIQSKI 312
              G + E K + S++
Sbjct: 562 LRLG-KYEPKSVFSRM 576



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 132/300 (44%), Gaps = 5/300 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +++G  K      AL + + + +     ++V YN L KGL + G+    + +   + 
Sbjct: 519 YSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYE-PKSVFSRMI 577

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  P+ +TY ++M   F   K +  L++L+ MK  G   +   Y  +I    K G ++
Sbjct: 578 ELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIE 637

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +    + +M+  G     + +  L+  Y +  K +A   +  ++   G   ++  +  LI
Sbjct: 638 KVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLI 697

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
             LC+ G  K A + L  M   G  +++  YN ++        ++ A N +  M V    
Sbjct: 698 TVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGIS 757

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +  TY++++  L     +  A KL+    + G+    +    +V G    G +R++ K+
Sbjct: 758 PNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKL 817



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 114/279 (40%), Gaps = 41/279 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P       +L    ++R  D  L++ + L   G     + YN LI  LC+ G 
Sbjct: 646 MLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGM 705

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L E+   G + + +TY  +++                            GYCT
Sbjct: 706 TKKANVVLTEMVIKGISADIVTYNALIR----------------------------GYCT 737

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                     +++A +   QM+  G+  +I +YN L+      G +  A  L+ EM ++G
Sbjct: 738 G-------SHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERG 790

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  T+ IL+ G  + GN + + +L+ E + K GF      YN ++    K GK+  A
Sbjct: 791 LVPNATTYNILVSGHGRVGNKRDSIKLYCEMITK-GFIPTTGTYNVLIQDYAKAGKMRQA 849

Query: 240 INVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
             +   M     + +S TY  ++   CK    P   +LL
Sbjct: 850 RELLNEMLTRGRIPNSSTYDVLICGWCKLSCQPEMDRLL 888


>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
 gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
          Length = 491

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 140/265 (52%), Gaps = 13/265 (4%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L+ L K+R+   A  + R L++  F P++VTYN L  G C+      A  +L+ + 
Sbjct: 168 FNSLLDALSKSRHAGKAASLVRALEQR-FTPDVVTYNTLADGWCRVKDTSRALDVLRLMV 226

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----FDGFGYCTVIAAFVK 127
           +SG AP   TY  I+K  FR  + +   +    MK++G        D   Y T++     
Sbjct: 227 ESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGV 286

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L++A    ++M  +G    + +YN LI + CK+G +E A  + D M  +G+  +  T
Sbjct: 287 AGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVT 346

Query: 188 HTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +T+LI GLC AG I +G +L LE M   G +  ++ YN ++  L ++G+++  +++FE M
Sbjct: 347 YTVLIRGLCHAGKIDRGLKL-LERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKM 405

Query: 247 E-----VKDSFTYSSMVHNLCKAKR 266
                 + +  TY+ ++  +   KR
Sbjct: 406 SKGEECLPNQDTYNIIISAMFMRKR 430



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 8/202 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-----VPELVTYNILIKGL 55
           M+   + P   T+NI+L G  +     +A   F  ++K G       P++V+Y  ++ GL
Sbjct: 225 MVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGL 284

Query: 56  CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
             AG+L  AR +  E+   G AP+  TY  +++   +    +  + +   M+ KGY  + 
Sbjct: 285 GVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNV 344

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  +I      G++      +E+M   G +  + +YN LI    +EG++E    L ++
Sbjct: 345 VTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEK 404

Query: 176 MEKQGFEC--DKYTHTILIDGL 195
           M K G EC  ++ T+ I+I  +
Sbjct: 405 MSK-GEECLPNQDTYNIIISAM 425



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 4/175 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  AT+N ++  +CK    ++A+ +F G++  G+VP +VTY +LI+GLC AG++     +
Sbjct: 307 PSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKL 366

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-YCTVIAAFV 126
           L+ + + G  P   TY  +++  F   + + GL++   M +          Y  +I+A  
Sbjct: 367 LERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMF 426

Query: 127 KIGRLKE---ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
              R ++   A   +E+MV  G       +N ++N     G  E +  LL   EK
Sbjct: 427 MRKRAEDMVLAARMVEEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKLLRMQEK 481



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 6/211 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  M++GL      + A ++F  + K G  P + TYN LI+ +CK G +  A  +
Sbjct: 272 PDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTV 331

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +   G+ PN +TYT +++      K   GL++L  MK  G       Y  +I    +
Sbjct: 332 FDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFE 391

Query: 128 IGRLKEATDYMEQMVTDGVQ--LDIVSYNTLINLYCKEGKLEAAYL---LLDEMEKQGFE 182
            G +++  D  E+M + G +   +  +YN +I+      + E   L   +++EM  +G+ 
Sbjct: 392 EGEMEKGLDLFEKM-SKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVEEMVDRGYL 450

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
             ++    +++GL   GN + +R  L    K
Sbjct: 451 PRRFMFNRVLNGLMLTGNQELSRKLLRMQEK 481



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 10/145 (6%)

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V  D+  +N+L++   K      A  L+  +E Q F  D  T+  L DG C+  +   A 
Sbjct: 161 VAQDLPLFNSLLDALSKSRHAGKAASLVRALE-QRFTPDVVTYNTLADGWCRVKDTSRAL 219

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSS 256
             L  M + G       YN I+    + G++ HA + F  M+ +         D  +Y++
Sbjct: 220 DVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTT 279

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSG 281
           MVH L  A +L  A K+     K G
Sbjct: 280 MVHGLGVAGQLEKARKVFDEMAKEG 304


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 41/317 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++ +++  LC +R  D A+ + R ++  G   ++VTY  LI+GLC A  +  A  +
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+ +SG  PN + Y+++++   ++ +++   ++   M  KG   D   Y  +I +  K
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+ K+A   M+ MV  G++ ++V+YN LIN  CKEG ++ A  +L +M ++G   D  T
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVT 292

Query: 188 HTILIDGLCKAGNIKGARLHLEYM---------NKIGFDS-------------------- 218
           +  LI GL     +  A   LE M         N + F+S                    
Sbjct: 293 YNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAM 352

Query: 219 --------NLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
                   NL  YN ++  L +  K+  A+ + + M       DSFTYS ++   CK  +
Sbjct: 353 MEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQ 412

Query: 267 LPSASKLLLSCLKSGVR 283
           +  A  LL +    G+ 
Sbjct: 413 VDRAEDLLSTMRDRGIE 429



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 143/317 (45%), Gaps = 40/317 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +L G CK+   ++  ++F  + + G  P++V Y  LI  LCK G+ + A 
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +   G  PN +TY  ++ C  +    K  + +L  M  KG   D   Y T+I   
Sbjct: 241 GVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 126 VKIGRLKEATDYMEQMV--TDGVQLDIVSYNTLINLYCKEGKLEAAYL------------ 171
             +  + EA   +E+MV   + V+ ++V++N++I   C  G++  A+             
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV 360

Query: 172 -----------------------LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
                                  L+DEM   G E D +T++ILI G CK   +  A   L
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLL 420

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAK 265
             M   G +  L  Y  ++  + + G ++ A N+F  M+     D   YS+M+H  CKA 
Sbjct: 421 STMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAG 480

Query: 266 RLPSASKLLLSCLKSGV 282
            L +A +LL S +  G+
Sbjct: 481 DLKTAKELLKSIVDEGL 497



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 140/279 (50%), Gaps = 11/279 (3%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRKYKL 98
           V + V+YN ++  LC+ G    A  +L+ +    H    PNA++YT +M+    +R    
Sbjct: 74  VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQ 133

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            + +L +M+  G   D   Y T+I        + +A + M +M   G++ ++V Y++L+ 
Sbjct: 134 AVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            YCK G+ E    +  EM ++G E D   +T LID LCK G  K A   ++ M + G + 
Sbjct: 194 GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           N+  YN +++ + K+G +  AI V + M  K    D  TY++++  L     +  A  LL
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL 313

Query: 275 LSCLKSGVRILKS---AQKAVVDGLRHSGCRREAKKIQS 310
              ++ G  I+K       +V+ GL   G  R+A ++++
Sbjct: 314 EEMVR-GKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 149/287 (51%), Gaps = 7/287 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N+++N +CK      A+ + + + + G  P++VTYN LIKGL     
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLE 305

Query: 61  LRTARWILKEL--GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           +  A W+L+E+  G +   PN +T+ ++++      + +   ++ + M+  G   +   Y
Sbjct: 306 MDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTY 365

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +I   +++ ++++A + M++M + G++ D  +Y+ LI  +CK  +++ A  LL  M  
Sbjct: 366 NLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD 425

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G E + + +  L+  +C+ G ++ AR     M+   F  ++ AY+ ++    K G +  
Sbjct: 426 RGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKT 484

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           A  + +S+       D+ TYS +++   K+  + +A+ +L     SG
Sbjct: 485 AKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASG 531



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 138/272 (50%), Gaps = 1/272 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLC       A ++   +++ G +  LVTYN+LI GL +  ++R A  +
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G  P++ TY+ ++K   +  +     ++LS M+ +G   + F Y  ++ A  +
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A +   +M  +   LD+V+Y+T+I+  CK G L+ A  LL  +  +G   D  T
Sbjct: 445 QGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVT 503

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++I+I+   K+G+++ A   L+ M   GF  ++  ++ ++      G+I+  + +   M 
Sbjct: 504 YSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMI 563

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
            K+    S ++  L  +    +  K LL  L 
Sbjct: 564 TKNIALDSKIISTLSTSLVASNEGKALLQSLP 595



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 10/160 (6%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYT 187
           L EAT  ++ + +     D VSYNT++   C+ G  + A  LL  M  +       +  +
Sbjct: 61  LGEATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---- 243
           +T+L+  LC       A   L  M   G  +++  Y  ++  L    ++D A+ +     
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           ES    +   YSS++   CK+ R     K+ +   + G+ 
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIE 217


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 159/327 (48%), Gaps = 15/327 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP T TFNI++ G C N   D+  R+F  L + G  P++VTYN L+ GLC+AG++  A 
Sbjct: 216 VTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAY 275

Query: 66  WILKELGDSG--HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            ++K +G       PN +TYTT+++     R+ +  L +   M  +G   +   Y T+I 
Sbjct: 276 NVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIK 335

Query: 124 AFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
              +  + ++  D +E    DG    D  ++NTL++ +C  G L+ A  + + M +   +
Sbjct: 336 GLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQ 395

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYM--NKI-----GFDSNLEAYNCIVDRLGKDGK 235
            D  T++ L+  LC+ G+ + A   L+ +   KI     G    + AYN I   L + GK
Sbjct: 396 PDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGK 455

Query: 236 IDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
              A   F  +     +D  +Y +++   CK     S  +LL+  L+          +++
Sbjct: 456 TKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESL 515

Query: 293 VDGLRHSGCRREAKKIQSKIRMAKISH 319
           ++GL H    +    +QS  +M + SH
Sbjct: 516 INGLLHMD--KPLLALQSLEKMLRSSH 540



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 148/310 (47%), Gaps = 15/310 (4%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE-L 71
           FN ++    +      ++++F  ++ HG  P +VT+N L+  L K GR   A+ +  E L
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEML 211

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  T+  +++    N     G  I + + R G   D   Y T++    + G++
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKV 271

Query: 132 KEATDYMEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             A + ++ M    V L  ++V+Y TLI  YC + ++E A  + +EM  QG + +  T+ 
Sbjct: 272 TVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYN 331

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESM-E 247
            LI GLC+A   +  +  LE     G F  +   +N ++      G +D A+ VFE M E
Sbjct: 332 TLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSE 391

Query: 248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK-------SGVRILKSAQKAVVDGLR 297
           +K   DS TYS++V +LC+      A  LL   L+        G + L +A   +   L 
Sbjct: 392 LKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLC 451

Query: 298 HSGCRREAKK 307
            +G  ++A+K
Sbjct: 452 ETGKTKKAEK 461



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 128/291 (43%), Gaps = 13/291 (4%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P   T+  ++ G C  R  + AL +F  +   G     +TYN LIKGLC+A +    
Sbjct: 287 DLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKI 346

Query: 65  RWILK-ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           + IL+   GD   +P+  T+ T+M C          L++   M       D   Y  ++ 
Sbjct: 347 KDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVR 406

Query: 124 AFVKIGRLKEATDYMEQMVT-------DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +  + G  ++A D +++++        DG +  + +YN +    C+ GK + A     ++
Sbjct: 407 SLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQL 466

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            ++G + D  ++  LI G CK G  +     L  M +  F  + E Y  +++ L    K 
Sbjct: 467 MRRGTQ-DPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKP 525

Query: 237 DHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             A+   E M       +S T+ S++  L +  R   ++ L+   L   +R
Sbjct: 526 LLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIR 576



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 125/261 (47%), Gaps = 10/261 (3%)

Query: 24  RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP---NA 80
           R T  AL+ F   Q+ G+     +Y  +++ L +   L TAR  L  +           A
Sbjct: 90  RDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEA 149

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD-YME 139
             + ++M+   R   ++  +++ + MK  G +     + +++   +K GR   A   Y E
Sbjct: 150 RFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDE 209

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
            + T GV  D  ++N LI  +C  G ++  + + +++ + G E D  T+  L+DGLC+AG
Sbjct: 210 MLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAG 269

Query: 200 NIKGARLHLEYMNK--IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
            +  A   ++ M K  +  + N+  Y  ++       +I+ A+ VFE M  +    ++ T
Sbjct: 270 KVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNIT 329

Query: 254 YSSMVHNLCKAKRLPSASKLL 274
           Y++++  LC+A++      +L
Sbjct: 330 YNTLIKGLCEARKFEKIKDIL 350



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 38/259 (14%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G  +P T TFN +++  C     D+AL++F  + +    P+  TY+ L++ LC+ G    
Sbjct: 357 GTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEK 416

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL---GLEILSAMKRKGYTFDGFGYCT 120
           A  +L +L +                    RK  L   G + L A            Y  
Sbjct: 417 AEDLLDKLLE--------------------RKILLSGDGCKPLVA-----------AYNP 445

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +     + G+ K+A     Q++  G Q D  SY TLI  +CKEG  E+ Y LL  M ++ 
Sbjct: 446 IFKYLCETGKTKKAEKAFRQLMRRGTQ-DPPSYKTLIMGHCKEGTFESGYELLVLMLRKD 504

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D  T+  LI+GL        A   LE M +     N   ++ I+ +L + G+   + 
Sbjct: 505 FLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRTSESA 564

Query: 241 NVFESM---EVKDSFTYSS 256
           ++ + M    ++ + ++S+
Sbjct: 565 SLIQLMLDKNIRQNLSFST 583


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 142/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++ LCK+    +A  +F  +Q+ G  P+L TYN +I G C +GR   A 
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +   +P+ +TY  ++    +  K+    E+   M  +G   +   Y ++I  F
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A      M T G   +++++NTLI+ YC   +++    LL EM + G   D 
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADT 430

Query: 186 YTHTILI-----------------------------------DGLCKAGNIKGARLHLEY 210
            T+  LI                                   DGLC  G +K A    + 
Sbjct: 431 TTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 211 MNKI-----------GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYS 255
           M K            G + +++ YN ++  L  +GK   A  ++E M     V D+ TYS
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM+  LCK  RL  A+++  S
Sbjct: 551 SMIDGLCKQSRLDEATQMFDS 571



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 144/310 (46%), Gaps = 15/310 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++N   K      A  ++  +   G +P  +TY+ +I G CK  RL  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G +PN IT+ T++      ++   G+E+L  M   G   D   Y T+I  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------ 179
             +G L  A D +++M++ G+  DIV+ +TL++  C  GKL+ A  +   M+K       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 180 -----GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                G E D  T+ ILI GL   G    A    E M   G   +   Y+ ++D L K  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           ++D A  +F+SM  K    +  T++++++  CKA R+    +L     + G+        
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 291 AVVDGLRHSG 300
            ++ G R  G
Sbjct: 621 TLICGFRKVG 630



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 156/351 (44%), Gaps = 40/351 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN +L+GLC       AL +F  + +    P +VT+  L+ GLC+ GR+  A 
Sbjct: 145 LHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 66  WILKEL----------------------GDSGHA--------------PNAITYTTIMKC 89
            +L  +                      GD+  A              PN + Y+ I+  
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDS 264

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             ++ ++     + + M+ KG   D F Y ++I  F   GR  +A   +++M+   +  D
Sbjct: 265 LCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD 324

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +V+YN LIN + KEGK   A  L DEM  +G   +  T++ +IDG CK   +  A     
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M   G   NL  +N ++D      +ID  + +   M     V D+ TY++++H      
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            L +A  LL   + SG+         ++DGL  +G  ++A ++   ++ +K
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 148/330 (44%), Gaps = 15/330 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T++ M++G CK    D A  MF  +   G  P L+T+N LI G C A R
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+ ++G   +  TY T++   +        L++L  M   G   D     T
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             +GV+ D+ +YN LI+    EGK   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T++ +IDGLCK   +  A    + M    F  N+  +  +++ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K G++D  + +F  M     V ++ TY +++    K   +  A  +    + SGV   
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
               + ++ GL      + A  +  K++M+
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQMS 680



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 5/268 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F I++   C       AL  F  + K G  P++VT+N L+ GLC   R+  A  +  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++   PN +T+TT+M    R  +    + +L  M   G       Y T++    K G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 132 KEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             A + + +M     +  ++V Y+ +I+  CK+G+   A  L  EM+++G   D +T+  
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +I G C +G    A   L+ M +     ++  YN +++   K+GK   A  +++ M    
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + ++ TYSSM+   CK  RL +A  + 
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMF 383



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 137/291 (47%), Gaps = 5/291 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++A+ +F  + +   +P +V +  L+  + +  R      + +++       +  ++T +
Sbjct: 61  EDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTIL 120

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +KC     K    L     + + G   D   + T++       R+ EA +   QM     
Sbjct: 121 IKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTC 180

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + ++V++ TL+N  C+EG++  A  LLD M + G +  + T+  ++DG+CK G+   A  
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALN 240

Query: 207 HLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
            L  M ++     N+  Y+ I+D L KDG+   A N+F  M+ K    D FTY+SM+   
Sbjct: 241 LLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           C + R   A +LL   L+  +        A+++     G   EA+++  ++
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 5/263 (1%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++  S   P+ + +  +M    R  +  L + +   M+RK    D + +  
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F    +L  A     ++   G+  D+V++NTL++  C E ++  A  L  +M +  
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T T L++GLC+ G I  A   L+ M + G       Y  IVD + K G    A+
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 241 NVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           N+   ME     + +   YS+++ +LCK  R   A  L     + G+        +++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
              SG   +A+++  ++   KIS
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKIS 322



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L++A D    M+       +V +  L+ +  +  + +    L  +ME++   
Sbjct: 52  SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           CD Y+ TILI   C    +  A      + K+G   ++  +N ++  L  + ++  A+N+
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171

Query: 243 FESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F  M       +  T++++++ LC+  R+  A  LL   ++ G++  +     +VDG+  
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 299 SGCRREAKKIQSKIRMAKISH 319
            G    A  +  K  M ++SH
Sbjct: 232 KGDTVSALNLLRK--MEEVSH 250


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 142/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++ LCK+    +A  +F  +Q+ G  P+L TYN +I G C +GR   A 
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +   +P+ +TY  ++    +  K+    E+   M  +G   +   Y ++I  F
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A      M T G   +++++NTLI+ YC   +++    LL EM + G   D 
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADT 430

Query: 186 YTHTILI-----------------------------------DGLCKAGNIKGARLHLEY 210
            T+  LI                                   DGLC  G +K A    + 
Sbjct: 431 TTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 211 MNKI-----------GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYS 255
           M K            G + +++ YN ++  L  +GK   A  ++E M     V D+ TYS
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM+  LCK  RL  A+++  S
Sbjct: 551 SMIDGLCKQSRLDEATQMFDS 571



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 144/310 (46%), Gaps = 15/310 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++N   K      A  ++  +   G +P  +TY+ +I G CK  RL  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G +PN IT+ T++      ++   G+E+L  M   G   D   Y T+I  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------ 179
             +G L  A D +++M++ G+  DIV+ +TL++  C  GKL+ A  +   M+K       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 180 -----GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                G E D  T+ ILI GL   G    A    E M   G   +   Y+ ++D L K  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           ++D A  +F+SM  K    +  T++++++  CKA R+    +L     + G+        
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 291 AVVDGLRHSG 300
            ++ G R  G
Sbjct: 621 TLICGFRKVG 630



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 40/351 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +L+GLC       AL +F  + +    P +VT+  L+ GLC+ GR+  A 
Sbjct: 145 LHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 66  WILKEL----------------------GDSGHA--------------PNAITYTTIMKC 89
            +L  +                      GD+  A              PN + Y+ I+  
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDS 264

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             ++ ++     + + M+ KG   D F Y ++I  F   GR  +A   +++M+   +  D
Sbjct: 265 LCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD 324

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +V+YN LIN + KEGK   A  L DEM  +G   +  T++ +IDG CK   +  A     
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M   G   NL  +N ++D      +ID  + +   M     V D+ TY++++H      
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            L +A  LL   + SG+         ++DGL  +G  ++A ++   ++ +K
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 148/330 (44%), Gaps = 15/330 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T++ M++G CK    D A  MF  +   G  P L+T+N LI G C A R
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+ ++G   +  TY T++   +        L++L  M   G   D     T
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             +GV+ D+ +YN LI+    EGK   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T++ +IDGLCK   +  A    + M    F  N+  +  +++ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K G++D  + +F  M     V ++ TY +++    K   +  A  +    + SGV   
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
               + ++ GL      + A  +  K++M+
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQMS 680



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 5/268 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FNI++   C       AL  F  + K G  P++VT+  L+ GLC   R+  A  +  ++
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQM 175

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++   PN +T+TT+M    R  +    + +L  M   G       Y T++    K G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 132 KEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             A + + +M     +  ++V Y+ +I+  CK+G+   A  L  EM+++G   D +T+  
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +I G C +G    A   L+ M +     ++  YN +++   K+GK   A  +++ M    
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + ++ TYSSM+   CK  RL +A  + 
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMF 383



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 138/310 (44%), Gaps = 40/310 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  ++  + +    D  + +++ +++     ++ ++NILIK  C   +L  A   
Sbjct: 77  PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALST 136

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G  P+ +T+TT++                             G C        
Sbjct: 137 FGKITKLGLHPDVVTFTTLLH----------------------------GLCVE------ 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA +   QM     + ++V++ TL+N  C+EG++  A  LLD M + G +  + T
Sbjct: 163 -DRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +  ++DG+CK G+   A   L  M ++     N+  Y+ I+D L KDG+   A N+F  M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + K    D FTY+SM+   C + R   A +LL   L+  +        A+++     G  
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 303 REAKKIQSKI 312
            EA+++  ++
Sbjct: 342 FEAEELYDEM 351



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 5/263 (1%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++  S   P+ + +  +M    R  +  L + +   M+RK    D + +  
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F    +L  A     ++   G+  D+V++ TL++  C E ++  A  L  +M +  
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T T L++GLC+ G I  A   L+ M + G       Y  IVD + K G    A+
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 241 NVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           N+   ME     + +   YS+++ +LCK  R   A  L     + G+        +++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
              SG   +A+++  ++   KIS
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKIS 322



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 91/201 (45%), Gaps = 6/201 (2%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L++A D    M+       +V +  L+ +  +  + +    L  +ME++   
Sbjct: 52  SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           CD Y+  ILI   C    +  A      + K+G   ++  +  ++  L  + ++  A+N+
Sbjct: 112 CDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNL 171

Query: 243 FESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F  M       +  T++++++ LC+  R+  A  LL   ++ G++  +     +VDG+  
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 299 SGCRREAKKIQSKIRMAKISH 319
            G    A  +  K  M ++SH
Sbjct: 232 KGDTVSALNLLRK--MEEVSH 250


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 6/282 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N++++G C+    ++A  +++ L   G +P  V +  LI G CKA R   A+
Sbjct: 244 MRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAK 303

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++   G AP    Y ++M   FR+   +  L +   M R G   D F    V+   
Sbjct: 304 DMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGL 363

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+++ A  ++E +  DGV L+  +YN LI+ YC+ G LE A      M + G E + 
Sbjct: 364 CDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNV 423

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----N 241
            +++ LIDG  K G ++ A      M   G + N+  Y  ++    K+G ID A      
Sbjct: 424 VSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKE 483

Query: 242 VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           + E+    ++ T S +V  LC+  R+  A + ++    SG++
Sbjct: 484 MIENGISPNAITVSVLVDGLCRENRVQDAVRFVME--HSGIK 523



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 143/302 (47%), Gaps = 21/302 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++G  ++     AL +++ + + G  P+  T +I+++GLC  G+++ A 
Sbjct: 314 VAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAA 373

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+ + + G   NA  Y  ++    RN   +  L   + M   G   +   Y ++I   
Sbjct: 374 RFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGH 433

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G+++ A     +MV  G++ ++V+Y  LI+ + K G ++AA+    EM + G   + 
Sbjct: 434 SKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNA 493

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLE-----YMNKIGFDSNLEA-----------YNCIVD 228
            T ++L+DGLC+   ++ A R  +E     Y +   F SN              Y  ++ 
Sbjct: 494 ITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIY 553

Query: 229 RLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            L  DG+   A  +F  M     + DSFTY+ ++   C    + +A  L    +K GV+ 
Sbjct: 554 GLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKP 613

Query: 285 LK 286
           ++
Sbjct: 614 MR 615



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 42/295 (14%)

Query: 50  ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           +L+  L + G L  A ++ + L      P       ++    + R+ +   E+   M R+
Sbjct: 116 VLVIALSQMGLLDEALYVFRRLWTLPALPAC---NAVLDGLVKARRSRCAWELFDEMLRR 172

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           G       Y T+I A    G + +A +  +QMV   +  ++++Y ++I + C+EG +  A
Sbjct: 173 GMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDA 232

Query: 170 YLLLDEMEKQGFECDKYTHTIL-----------------------------------IDG 194
             L D M++ G   ++YT+ +L                                   IDG
Sbjct: 233 ERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDG 292

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKD 250
            CKA     A+     M + G    +  YN ++D   + G    A+++++ M       D
Sbjct: 293 FCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPD 352

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            FT S +V  LC   ++  A++ L    + GV +  +A  A++D    +G   EA
Sbjct: 353 EFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEA 407



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 74/164 (45%), Gaps = 17/164 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  +++G  KN   D A R  + + ++G  P  +T ++L+ GLC+  R
Sbjct: 449 MVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENR 508

Query: 61  LRTA-RWILKELG----------------DSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103
           ++ A R++++  G                +    PN+  Y T++   + + ++    ++ 
Sbjct: 509 VQDAVRFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLF 568

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           S M++ G   D F Y  +I     +G +  A      M+  GV+
Sbjct: 569 SYMRKSGMISDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVK 612


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 146/311 (46%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NGLCK      A  +   +   G  P+  TYN L+   C+      A+
Sbjct: 32  LKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAK 91

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+   G  P+ ++++++M    RNR     L     MK+ G   D   Y  ++  +
Sbjct: 92  EIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY 151

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA    ++M+  G  LD+++YNT++N  CKE  L  A  L DEM ++G   D 
Sbjct: 152 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 211

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT T LI G C+ GN+  A      M +     ++ AYN ++D   K G+++ A  +++ 
Sbjct: 212 YTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDG 271

Query: 246 MEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +  F    TY  +++  C    +  A +L    ++ G++        V+ G   SG 
Sbjct: 272 MISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGD 331

Query: 302 RREAKKIQSKI 312
             +A +   ++
Sbjct: 332 SSKADEFLGRM 342



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 4/259 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   +F+ ++    +NR+ D AL  FR ++K G VP+ V Y +L+ G C+ G +  A 
Sbjct: 102 VVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 161

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+ + G   + I Y TI+    + +      ++   M  +G   D + + T+I   
Sbjct: 162 KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGH 221

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + +A      M    ++ DIV+YNTLI+ +CK G++E A  L D M  +    + 
Sbjct: 222 CQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNH 281

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD---RLGKDGKIDHAINV 242
            T+ ILI+  C  G++  A    + M + G    L   N ++    R G   K D  +  
Sbjct: 282 ITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGR 341

Query: 243 FESMEV-KDSFTYSSMVHN 260
             +  V  D  +Y++++++
Sbjct: 342 MIAKGVAPDHISYNTLIND 360



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 132/277 (47%), Gaps = 4/277 (1%)

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +VTYN LI   C+ G L  A  I+  + D G  P+  TY  I+    +  +Y     IL 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            M   G + D   Y T++    +     EA +   +M+  GV  D+VS+++L+ ++ +  
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
            L+ A +   +M+K G   D   +T+L+ G C+ GN+  A    + M + G   ++ AYN
Sbjct: 121 HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180

Query: 225 CIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            I++ L K+  +  A  +F+ M     + D +T+++++H  C+   +  A  L  +  + 
Sbjct: 181 TILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQR 240

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            ++    A   ++DG    G   +A ++   +   KI
Sbjct: 241 NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKI 277


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 142/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++ LCK+    +A  +F  +Q+ G  P+L TYN +I G C +GR   A 
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +   +P+ +TY  ++    +  K+    E+   M  +G   +   Y ++I  F
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A      M T G   +++++NTLI+ YC   +++    LL EM + G   D 
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADT 430

Query: 186 YTHTILI-----------------------------------DGLCKAGNIKGARLHLEY 210
            T+  LI                                   DGLC  G +K A    + 
Sbjct: 431 TTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 211 MNKI-----------GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYS 255
           M K            G + +++ YN ++  L  +GK   A  ++E M     V D+ TYS
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM+  LCK  RL  A+++  S
Sbjct: 551 SMIDGLCKQSRLDEATQMFDS 571



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 144/310 (46%), Gaps = 15/310 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++N   K      A  ++  +   G +P  +TY+ +I G CK  RL  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G +PN IT+ T++      ++   G+E+L  M   G   D   Y T+I  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------ 179
             +G L  A D +++M++ G+  DIV+ +TL++  C  GKL+ A  +   M+K       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 180 -----GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                G E D  T+ ILI GL   G    A    E M   G   +   Y+ ++D L K  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           ++D A  +F+SM  K    +  T++++++  CKA R+    +L     + G+        
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 291 AVVDGLRHSG 300
            ++ G R  G
Sbjct: 621 TLICGFRKVG 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 157/351 (44%), Gaps = 40/351 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN +L+GLC       AL +F  + +    P +VT+  L+ GLC+ GR+  A 
Sbjct: 145 LHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 66  WILK----------------------ELGDSGHA--------------PNAITYTTIMKC 89
            +L                       ++GD+  A              PN + Y+ I+  
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDS 264

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             ++ ++     + + M+ KG   D F Y ++I  F   GR  +A   +++M+   +  D
Sbjct: 265 LCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD 324

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +V+YN LIN + KEGK   A  L DEM  +G   +  T++ +IDG CK   +  A     
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M   G   NL  +N ++D      +ID  + +   M     V D+ TY++++H      
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            L +A  LL   + SG+         ++DGL  +G  ++A ++   ++ +K
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 129/268 (48%), Gaps = 5/268 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F I++   C       AL  F  + K G  P++VT+N L+ GLC   R+  A  +  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++   PN +T+TT+M    R  +    + +L  M   G       Y T++    KIG  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDT 235

Query: 132 KEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             A D + +M     +  ++V Y+ +I+  CK+G+   A  L  EM+++G   D +T+  
Sbjct: 236 VSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +I G C +G    A   L+ M +     ++  YN +++   K+GK   A  +++ M    
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + ++ TYSSM+   CK  RL +A  + 
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMF 383



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 148/330 (44%), Gaps = 15/330 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T++ M++G CK    D A  MF  +   G  P L+T+N LI G C A R
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+ ++G   +  TY T++   +        L++L  M   G   D     T
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             +GV+ D+ +YN LI+    EGK   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T++ +IDGLCK   +  A    + M    F  N+  +  +++ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K G++D  + +F  M     V ++ TY +++    K   +  A  +    + SGV   
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
               + ++ GL      + A  +  K++M+
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQMS 680



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 5/291 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++A+ +F  + +   +P +V +  L+  + +  R      + +++       +  ++T +
Sbjct: 61  EDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTIL 120

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +KC     K    L     + + G   D   + T++       R+ EA +   QM     
Sbjct: 121 IKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTC 180

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + ++V++ TL+N  C+EG++  A  LLD M + G +  + T+  ++DG+CK G+   A  
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALD 240

Query: 207 HLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
            L  M +I     N+  Y+ I+D L KDG+   A N+F  M+ K    D FTY+SM+   
Sbjct: 241 LLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           C + R   A +LL   L+  +        A+++     G   EA+++  ++
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 117/263 (44%), Gaps = 5/263 (1%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++  S   P+ + +  +M    R  +  L + +   M+RK    D + +  
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F    +L  A     ++   G+  D+V++NTL++  C E ++  A  L  +M +  
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T T L++GLC+ G I  A   L+ M + G       Y  IVD + K G    A+
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 241 NVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           ++   ME     + +   YS+++ +LCK  R   A  L     + G+        +++ G
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
              SG   +A+++  ++   KIS
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKIS 322



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L++A D    M+       +V +  L+ +  +  + +    L  +ME++   
Sbjct: 52  SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           CD Y+ TILI   C    +  A      + K+G   ++  +N ++  L  + ++  A+N+
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171

Query: 243 FESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F  M       +  T++++++ LC+  R+  A  LL   ++ G++  +     +VDG+  
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 299 SGCRREAKKIQSKIRMAKISH 319
            G    A  +  K  M +ISH
Sbjct: 232 IGDTVSALDLLRK--MEEISH 250


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 53/344 (15%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTAR 65
           P   ++NI+LNGLC    +  AL +   +   G    P++V+Y+ +I G  K G L    
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL---- 104

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++ D   +PN +TY +I+    + +     +E+L+ M + G   D   Y +++  F
Sbjct: 105 ---DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 161

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD- 184
              G+ KEA  ++++M +DGV+ D+V+YN+L++  CK G+   A  + D M K+G + D 
Sbjct: 162 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 185 ----------------------------------KYTHTILIDGLCKAGNIKGARLHLEY 210
                                              Y  +IL+    K   ++ A L    
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 281

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M + G + N   Y  ++D L K G+++ A+  FE M  +    DS  Y+S++H+LC   +
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
              A +L L  L  G+ +      +++D    S C +E + I+S
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSIID----SHC-KEGRVIES 380



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 144/282 (51%), Gaps = 4/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++  LCK +  D A+ +   + K G +P+ +TYN ++ G C +G+ + A 
Sbjct: 112 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 171

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     +I  +M ++G   D   Y T++  +
Sbjct: 172 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGY 231

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ L+  Y K+ K+E A L+  +M +QG   + 
Sbjct: 232 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 291

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +ID LCK+G ++ A L+ E M   G   +   YN ++  L    K + A  +F  
Sbjct: 292 VTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLE 351

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M  +     +  ++S++ + CK  R+  + KL    ++ GV+
Sbjct: 352 MLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVK 393



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 2/247 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++G C +     A+   + ++  G  P++VTYN L+  LCK GR
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 201

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR I   +   G  P+  TY T+++             +L  M R G   + + +  
Sbjct: 202 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 261

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A+ K  +++EA     +M   G+  + V+Y T+I++ CK G++E A L  ++M  +G
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 321

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D   +  LI  LC      K   L LE +++ G   +   +N I+D   K+G++  +
Sbjct: 322 LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR-GICLSTIFFNSIIDSHCKEGRVIES 380

Query: 240 INVFESM 246
             +F+ M
Sbjct: 381 GKLFDLM 387



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 35/217 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++ LCKN     A ++F  + K G  P++ TY  L++G    G L    
Sbjct: 182 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMH 241

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G  PN   ++ ++    +  K +  + + S M+++G   +   Y TVI   
Sbjct: 242 GLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVL 301

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI---------------------------- 157
            K GR+++A  Y EQM+ +G++ D + YN+LI                            
Sbjct: 302 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 361

Query: 158 -------NLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                  + +CKEG++  +  L D M + G + D  T
Sbjct: 362 IFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT 398



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 75/152 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    + A+ +F  +++ G  P  VTY  +I  LCK+GR
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 306

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G  P++I Y +++       K++   E+   M  +G       + +
Sbjct: 307 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNS 366

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           +I +  K GR+ E+    + MV  GV+ DI++
Sbjct: 367 IIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT 398



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYN 224
           E A  + DE+ ++G   D +++ IL++GLC     + A   L  M   G D   ++ +Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 225 CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +++   K+G +D  ++   S  V    TY+S++  LCKA+ +  A ++L + +KSGV  
Sbjct: 93  TVINGFFKEGDLDKMLDQRISPNV---VTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMP 149

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
                 ++V G   SG  +EA     K+R
Sbjct: 150 DCMTYNSIVHGFCSSGQPKEAIVFLKKMR 178


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 142/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++ LCK+    +A  +F  +Q+ G  P+L TYN +I G C +GR   A 
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +   +P+ +TY  ++    +  K+    E+   M  +G   +   Y ++I  F
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A      M T G   +++++NTLI+ YC   +++    LL EM + G   D 
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADT 430

Query: 186 YTHTILI-----------------------------------DGLCKAGNIKGARLHLEY 210
            T+  LI                                   DGLC  G +K A    + 
Sbjct: 431 TTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 211 MNKI-----------GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYS 255
           M K            G + +++ YN ++  L  +GK   A  ++E M     V D+ TYS
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM+  LCK  RL  A+++  S
Sbjct: 551 SMIDGLCKQSRLDEATQMFDS 571



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 144/310 (46%), Gaps = 15/310 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++N   K      A  ++  +   G +P  +TY+ +I G CK  RL  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G +PN IT+ T++      ++   G+E+L  M   G   D   Y T+I  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------ 179
             +G L  A D +++M++ G+  DIV+ +TL++  C  GKL+ A  +   M+K       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 180 -----GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                G E D  T+ ILI GL   G    A    E M   G   +   Y+ ++D L K  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           ++D A  +F+SM  K    +  T++++++  CKA R+    +L     + G+        
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 291 AVVDGLRHSG 300
            ++ G R  G
Sbjct: 621 TLICGFRKVG 630



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 154/351 (43%), Gaps = 40/351 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +L+GLC       AL  F  + +    P +VT+  L+ GLC+ GR+  A 
Sbjct: 145 LHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 66  WILKEL----------------------GDSGHA--------------PNAITYTTIMKC 89
            +L  +                      GD+  A              PN + Y+ I+  
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDS 264

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             ++ ++     + + M+ KG   D F Y ++I  F   GR  +A   +++M+   +  D
Sbjct: 265 LCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD 324

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +V+YN LIN + KEGK   A  L DEM  +G   +  T++ +IDG CK   +  A     
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M   G   NL  +N ++D      +ID  + +   M     V D+ TY++++H      
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            L +A  LL   + SG+         ++DGL  +G  ++A ++   ++ +K
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 148/330 (44%), Gaps = 15/330 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T++ M++G CK    D A  MF  +   G  P L+T+N LI G C A R
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+ ++G   +  TY T++   +        L++L  M   G   D     T
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             +GV+ D+ +YN LI+    EGK   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T++ +IDGLCK   +  A    + M    F  N+  +  +++ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K G++D  + +F  M     V ++ TY +++    K   +  A  +    + SGV   
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
               + ++ GL      + A  +  K++M+
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQMS 680



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 5/268 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FNI++   C       AL  F  + K G  P++VT+  L+ GLC   R+  A     ++
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++   PN +T+TT+M    R  +    + +L  M   G       Y T++    K G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 132 KEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             A + + +M     +  ++V Y+ +I+  CK+G+   A  L  EM+++G   D +T+  
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +I G C +G    A   L+ M +     ++  YN +++   K+GK   A  +++ M    
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + ++ TYSSM+   CK  RL +A  + 
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMF 383



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 40/310 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  ++  + +    D  + +++ +++     ++ ++NILIK  C   +L  A   
Sbjct: 77  PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALST 136

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G  P+ +T+TT++                             G C        
Sbjct: 137 FGKITKLGLHPDVVTFTTLLH----------------------------GLCVE------ 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA D+  QM     + ++V++ TL+N  C+EG++  A  LLD M + G +  + T
Sbjct: 163 -DRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +  ++DG+CK G+   A   L  M ++     N+  Y+ I+D L KDG+   A N+F  M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + K    D FTY+SM+   C + R   A +LL   L+  +        A+++     G  
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 303 REAKKIQSKI 312
            EA+++  ++
Sbjct: 342 FEAEELYDEM 351



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 5/263 (1%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++  S   P+ + +  +M    R  +  L + +   M+RK    D + +  
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F    +L  A     ++   G+  D+V++ TL++  C E ++  A     +M +  
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T T L++GLC+ G I  A   L+ M + G       Y  IVD + K G    A+
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 241 NVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           N+   ME     + +   YS+++ +LCK  R   A  L     + G+        +++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
              SG   +A+++  ++   KIS
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKIS 322



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 92/201 (45%), Gaps = 6/201 (2%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L++A D    M+       +V +  L+ +  +  + +    L  +ME++   
Sbjct: 52  SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN- 241
           CD Y+  ILI   C    +  A      + K+G   ++  +  ++  L  + ++  A++ 
Sbjct: 112 CDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDF 171

Query: 242 ---VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
              +FE+    +  T++++++ LC+  R+  A  LL   ++ G++  +     +VDG+  
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 299 SGCRREAKKIQSKIRMAKISH 319
            G    A  +  K  M ++SH
Sbjct: 232 KGDTVSALNLLRK--MEEVSH 250


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG C     + A ++F+ ++     P+  TYN  I  LCK  R+  A  +
Sbjct: 250 PNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGV 309

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +L +SG  PNA+TY  ++  C               M  +G     F Y  +I A   
Sbjct: 310 LCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFL 369

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R++EA D +++M   GV+ D+V+YN  IN YC+ G  + A  L DEM ++       T
Sbjct: 370 EKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVET 429

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LID   K   +  A    +   K G   ++  +N ++D    +G ID A  + + M+
Sbjct: 430 YTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMD 489

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D  T+++++   C+ +++  A KLL    + G++    +   ++ G    G  +
Sbjct: 490 NAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMK 549

Query: 304 EAKKI 308
           +A ++
Sbjct: 550 DALEV 554



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 4/247 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N++++ L   +  + A  M + +++ G  P++VTYNI I G C+ G  + A  +  E+
Sbjct: 359 TYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEM 418

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +    P   TYT+++    +  +     E      ++G   D   +  +I      G +
Sbjct: 419 VEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNI 478

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A   +++M    V  D V++NTL+  YC+E K+E A  LLDEM+++G + D  ++  L
Sbjct: 479 DRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTL 538

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I G  K G++K A    + M  +GFD  L  YN ++    K G+ DHA  +   M+ K  
Sbjct: 539 ISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGI 598

Query: 250 --DSFTY 254
             D  TY
Sbjct: 599 TPDDSTY 605



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 104/195 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   T+  +++   K      A   F+   K G +P+++ +N LI G C  G 
Sbjct: 418 MVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGN 477

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LKE+ ++   P+ +T+ T+M+   R RK +   ++L  MK +G   D   Y T
Sbjct: 478 IDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNT 537

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ + K G +K+A +  ++M++ G    +++YN LI  Y K G+ + A  LL EM+ +G
Sbjct: 538 LISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKG 597

Query: 181 FECDKYTHTILIDGL 195
              D  T+  +I+ +
Sbjct: 598 ITPDDSTYLYVIEAM 612



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 149/326 (45%), Gaps = 41/326 (12%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE------------------------- 44
           T  F+++L+  C+ R  D AL     ++++  +P+                         
Sbjct: 147 TLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYE 206

Query: 45  ----------LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CCFRN 93
                     +VT+NI+I  LC+ G+ + A+  +  +   G  PN +TY T++   C R 
Sbjct: 207 EMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRG 266

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
            K++   +I   MK K    D + Y + I+   K  R++EA+  + +++  G+  + V+Y
Sbjct: 267 -KFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTY 325

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           N LI+  C +G L+ A+   DEM  +G     +T+ +LI  L     I+ A   ++ M +
Sbjct: 326 NALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMRE 385

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLPS 269
            G + ++  YN  ++   + G    A+++F+ M  K+      TY+S++    K  R+  
Sbjct: 386 KGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSE 445

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDG 295
           A +     +K G+        A++DG
Sbjct: 446 AEEKFKKSIKEGMLPDIIMFNALIDG 471


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 158/331 (47%), Gaps = 43/331 (12%)

Query: 1   MICGDLTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           M+C    PC    FN +++G C +     A+ +F G++K GFVP++ +Y+IL+ GLCK G
Sbjct: 273 MLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQG 332

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF------ 113
            + T  ++L E+  +G  PN ++Y++++    R  + +L  E+   +K +G+        
Sbjct: 333 DVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYS 392

Query: 114 -----------------------------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
                                        D + Y ++I A+ +  +LKEA +  E MV+D
Sbjct: 393 IVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSD 452

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G+  ++V+   L++ +  EG +  A+L LD++ + G      T+ ++I GLCK       
Sbjct: 453 GICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDM 512

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHN 260
                 M K G+  +   Y+ I+D   K   +  A  ++  M  + +    FTY+S+++ 
Sbjct: 513 WGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLING 572

Query: 261 LCKAKRLPSASKLLLSCLKSGV---RILKSA 288
           LC   +LP    L    +  G+   RIL ++
Sbjct: 573 LCHDDKLPEVMTLFKHMIGEGLAPDRILYTS 603



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 130/304 (42%), Gaps = 6/304 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P    ++ ++   C++R    AL +F  +   G  P +VT  IL+ G    G 
Sbjct: 414 MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGL 473

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L ++   G  P+  TY  I+    +  K      I + M ++GY  D   Y  
Sbjct: 474 IGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSI 533

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  FVK   L+EA     +MV +G + +I +Y +LIN  C + KL     L   M  +G
Sbjct: 534 IIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEG 593

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D+  +T LI   CK  N+K A      M   G  ++   Y C++    K   +D A 
Sbjct: 594 LAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQ 653

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              E M  K       TY+ ++    K      A  +  S L++G  I   A+ + + GL
Sbjct: 654 LFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAG--IAPDAKLSCILGL 711

Query: 297 RHSG 300
            + G
Sbjct: 712 GNDG 715



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 44  ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103
           EL   N L+K L +  ++  AR +  ++  SG +PN  +Y+ +M       K  L   + 
Sbjct: 175 ELQVCNFLLKRLVEGNQIMYARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALE 234

Query: 104 SAMKR--KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
              +   +G   +   Y T +       ++K A ++++ +   G   +   +N +I+ +C
Sbjct: 235 LLSEMEVEGVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFC 294

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
            +G++  A  + D M+K GF  D ++++IL+DGLCK G++      L  M + G   NL 
Sbjct: 295 HDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLV 354

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
           +Y+ ++  L + G+++ A  +F+ ++ +    D   YS ++H  C+
Sbjct: 355 SYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQ 400



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 136/306 (44%), Gaps = 6/306 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L  L +      A  +F  ++  G  P + +Y++L+       +L     +      
Sbjct: 180 NFLLKRLVEGNQIMYARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEM 239

Query: 74  --SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PNA TY T +      ++ K     L  + ++GY  + + +  VI  F   G++
Sbjct: 240 EVEGVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQV 299

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +  + M   G   D+ SY+ L++  CK+G +   Y +L EM + G   +  +++ L
Sbjct: 300 HKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSL 359

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           + GLC+AG ++ A    + +   GF  +   Y+ ++    +   ++   +++  M     
Sbjct: 360 LHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNF 419

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           V D++ YSS+++  C+ ++L  A ++    +  G+         +V G  + G   EA  
Sbjct: 420 VPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFL 479

Query: 308 IQSKIR 313
              K+R
Sbjct: 480 FLDKVR 485


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 142/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++ LCK+    +A  +F  +Q+ G  P+L TYN +I G C +GR   A 
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +   +P+ +TY  ++    +  K+    E+   M  +G   +   Y ++I  F
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A      M T G   +++++NTLI+ YC   +++    LL EM + G   D 
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADT 430

Query: 186 YTHTILI-----------------------------------DGLCKAGNIKGARLHLEY 210
            T+  LI                                   DGLC  G +K A    + 
Sbjct: 431 TTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 211 MNKI-----------GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYS 255
           M K            G + +++ YN ++  L  +GK   A  ++E M     V D+ TYS
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM+  LCK  RL  A+++  S
Sbjct: 551 SMIDGLCKQSRLDEATQMFDS 571



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 144/310 (46%), Gaps = 15/310 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++N   K      A  ++  +   G +P  +TY+ +I G CK  RL  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G +PN IT+ T++      ++   G+E+L  M   G   D   Y T+I  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------ 179
             +G L  A D +++M++ G+  DIV+ +TL++  C  GKL+ A  +   M+K       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 180 -----GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                G E D  T+ ILI GL   G    A    E M   G   +   Y+ ++D L K  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           ++D A  +F+SM  K    +  T++++++  CKA R+    +L     + G+        
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 291 AVVDGLRHSG 300
            ++ G R  G
Sbjct: 621 TLICGFRKVG 630



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 156/351 (44%), Gaps = 40/351 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TFN +L+GLC       AL +F  + +    P +VT+  L+ GLC+ GR+  A 
Sbjct: 145 LHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 66  WILKEL----------------------GDSGHA--------------PNAITYTTIMKC 89
            +L  +                      GD+  A              PN + Y+ I+  
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDS 264

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             ++ ++     + + M+ KG   D F Y ++I  F   GR  +A   +++M+   +  D
Sbjct: 265 LCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD 324

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +V+YN LIN + KEGK   A  L DEM  +G   +  T++ +IDG CK   +  A     
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M   G   NL  +N ++D      +ID  + +   M     V D+ TY++++H      
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            L +A  LL   + SG+         ++DGL  +G  ++A ++   ++ +K
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 148/330 (44%), Gaps = 15/330 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T++ M++G CK    D A  MF  +   G  P L+T+N LI G C A R
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+ ++G   +  TY T++   +        L++L  M   G   D     T
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             +GV+ D+ +YN LI+    EGK   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T++ +IDGLCK   +  A    + M    F  N+  +  +++ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K G++D  + +F  M     V ++ TY +++    K   +  A  +    + SGV   
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
               + ++ GL      + A  +  K++M+
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQMS 680



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 128/268 (47%), Gaps = 5/268 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F I++   C       AL  F  L K G  P++VT+N L+ GLC   R+  A  +  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++   PN +T+TT+M    R  +    + +L  M   G       Y T++    K G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 132 KEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             A + + +M     +  ++V Y+ +I+  CK+G+   A  L  EM+++G   D +T+  
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +I G C +G    A   L+ M +     ++  YN +++   K+GK   A  +++ M    
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + ++ TYSSM+   CK  RL +A  + 
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMF 383



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 137/291 (47%), Gaps = 5/291 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++A+ +F  + +   +P +V +  L+  + +  R      + +++       +  ++T +
Sbjct: 61  EDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTIL 120

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +KC     K    L     + + G   D   + T++       R+ EA +   QM     
Sbjct: 121 IKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTC 180

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + ++V++ TL+N  C+EG++  A  LLD M + G +  + T+  ++DG+CK G+   A  
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALN 240

Query: 207 HLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
            L  M ++     N+  Y+ I+D L KDG+   A N+F  M+ K    D FTY+SM+   
Sbjct: 241 LLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           C + R   A +LL   L+  +        A+++     G   EA+++  ++
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 5/263 (1%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++  S   P+ + +  +M    R  +  L + +   M+RK    D + +  
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F    +L  A     ++   G+  D+V++NTL++  C E ++  A  L  +M +  
Sbjct: 120 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T T L++GLC+ G I  A   L+ M + G       Y  IVD + K G    A+
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 241 NVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           N+   ME     + +   YS+++ +LCK  R   A  L     + G+        +++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
              SG   +A+++  ++   KIS
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKIS 322



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L++A D    M+       +V +  L+ +  +  + +    L  +ME++   
Sbjct: 52  SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           CD Y+ TILI   C    +  A      + K+G   ++  +N ++  L  + ++  A+N+
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171

Query: 243 FESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F  M       +  T++++++ LC+  R+  A  LL   ++ G++  +     +VDG+  
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 299 SGCRREAKKIQSKIRMAKISH 319
            G    A  +  K  M ++SH
Sbjct: 232 KGDTVSALNLLRK--MEEVSH 250


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 151/318 (47%), Gaps = 10/318 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T NI++N LC        L    G+ + G++P++VTY  LIKGLC   R+  A 
Sbjct: 122 LSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEAT 181

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF------DGFGYC 119
            +   +   G  PN +TY T++K   R     L L++   M      +      + F Y 
Sbjct: 182 RLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYN 241

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    KIG+ KEA     +MV  GV+ D+V+++ LI+  CKEG +  A   L+ M  +
Sbjct: 242 IIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLR 301

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D +T T LI+G C  G++  A+     M   G++ ++ +Y  ++    K   ++ A
Sbjct: 302 GIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEA 361

Query: 240 INVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + ++  M    +  D  T+  ++  L  A ++  A KL        V          +DG
Sbjct: 362 MKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDG 421

Query: 296 LRHSGCRREAKKIQSKIR 313
           L  +GC  EA ++ ++++
Sbjct: 422 LCKNGCLFEAMELFNELK 439



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 139/307 (45%), Gaps = 10/307 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN++L  L K ++      +++ +   G  P   T NILI  LC   R+R     +  +
Sbjct: 93  SFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGI 152

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G+ P+ +TYT+++K      +      +   M++ G   +   Y T+I    + G +
Sbjct: 153 MRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNI 212

Query: 132 KEATDYMEQMVTD------GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             A    ++M+          + +I SYN +I+  CK GK + A  L +EM  QG   D 
Sbjct: 213 NLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDV 272

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T + LID LCK G +  A+  LE M   G   +L  +  +++     G +D A  +F S
Sbjct: 273 VTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLS 332

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D  +Y+ +++  CK   +  A KL    L+ G          ++ GL  +G 
Sbjct: 333 MPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGK 392

Query: 302 RREAKKI 308
             +AKK+
Sbjct: 393 VGDAKKL 399



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 147/320 (45%), Gaps = 4/320 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF+ +++ LCK      A +    +   G VP+L T+  LI+G C  G 
Sbjct: 263 MVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGD 322

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A+ +   +   G+ P+ I+YT ++    +    +  +++ + M R G   D   +C 
Sbjct: 323 LDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCV 382

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G++ +A      +    V  ++   +  ++  CK G L  A  L +E++   
Sbjct: 383 LLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYN 442

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  +   LIDGLCKA  ++ A    E +++ G   ++  Y  +++   K+G++D+A 
Sbjct: 443 MKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNAN 502

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F+ ME      +  TYS+++H   K  +L    KLL   ++  V +  S    V D +
Sbjct: 503 ILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMV 562

Query: 297 RHSGCRREAKKIQSKIRMAK 316
                 RE   I  +  + K
Sbjct: 563 SKDEKCREWLDILQRFPVQK 582



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 150/356 (42%), Gaps = 45/356 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALR----MFRGLQKHGF--VPELVTYNILIKGLCKAGRL 61
           P   T+  ++ GLC+    + AL+    M  G   +     P + +YNI+I  LCK G+ 
Sbjct: 194 PNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKW 253

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
           + A+ +  E+ D G  P+ +T++ ++    +        + L  M  +G   D F + ++
Sbjct: 254 KEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSL 313

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F  +G L  A +    M + G + D++SY  LI  YCK   +E A  L +EM + G 
Sbjct: 314 IEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGK 373

Query: 182 ECDK-----------------------------------YTHTILIDGLCKAGNIKGARL 206
             D                                    Y  ++ +DGLCK G +  A  
Sbjct: 374 WPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAME 433

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
               +       ++E++NC++D L K  K++ A  +FE +  +    D  TY  M++  C
Sbjct: 434 LFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFC 493

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           K  ++ +A+ L     ++G         A++ G   +    E  K+  K+    +S
Sbjct: 494 KNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVS 549



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 122/269 (45%), Gaps = 15/269 (5%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           N  +  AL+ F  + +      ++++N+L+  L K         + K++  +G +PN  T
Sbjct: 74  NITSTQALQFFDLMMR-----SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFT 128

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
              ++ C     + + GL  ++ + R+GY  D   Y ++I       R+ EAT    +M 
Sbjct: 129 LNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQ 188

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM----EKQGFECDK--YTHTILIDGLC 196
             G   ++V+Y TLI   C+ G +  A  L  EM          C    +++ I+ID LC
Sbjct: 189 KLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELC 248

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSF 252
           K G  K A+     M   G   ++  ++ ++D L K+G +  A    E+M     V D F
Sbjct: 249 KIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLF 308

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           T++S++   C    L SA +L LS    G
Sbjct: 309 TFTSLIEGFCLVGDLDSAKELFLSMPSKG 337


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 39/307 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++  LCK      A R+ R +   G  P+ V Y  LI G CK G + +A 
Sbjct: 219 LKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAY 278

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+     +P+ ITYT                                    VI   
Sbjct: 279 RLFDEMQKRKISPDFITYT-----------------------------------AVICGL 303

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GR+ EA     +MV   ++ D V+Y  LI+ YCKEGK++ A+ L ++M + G   + 
Sbjct: 304 CQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNI 363

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T L DGLCK G +  A   L  M + G + N+  YN +V+ L K G ID A+ + + 
Sbjct: 364 VTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKD 423

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           MEV     D+ TY++++   CK++ +  A +LL   L   ++        +++G   SG 
Sbjct: 424 MEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGM 483

Query: 302 RREAKKI 308
             + +K+
Sbjct: 484 LEDGEKL 490



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 151/352 (42%), Gaps = 39/352 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P    +  +++G CK     +A R+F  +QK    P+ +TY  +I GLC+ GR
Sbjct: 249 MISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGR 308

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+      P+ +TYT ++    +  K K    + + M + G T +   Y  
Sbjct: 309 VMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTA 368

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +     K G +  A + + +M   G++L+I +YN+L+N  CK G ++ A  L+ +ME  G
Sbjct: 369 LADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG 428

Query: 181 FECDKYTHTILID-----------------------------------GLCKAGNIKGAR 205
           F  D  T+T L+D                                   G C +G ++   
Sbjct: 429 FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE 488

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNL 261
             L++M + G   N   YN ++ +      +     ++  M     V D  TY+ ++   
Sbjct: 489 KLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGH 548

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           CKA+ +  A  L    +  G  +  S+  A++ G        EA+++  ++R
Sbjct: 549 CKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMR 600



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 11/257 (4%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCK-AGRLRTA---RWILK---ELGDSGHAPNAI 81
           A ++F  +  +G +  + + N+ I  L +    ++ A    W+LK   E+   G  PN  
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPY 224

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           TY  ++    +  K      +L  M  +G   DG  Y T+I  F K+G +  A    ++M
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
               +  D ++Y  +I   C+ G++  A  L  EM  +  E D+ T+T LIDG CK G +
Sbjct: 285 QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKM 344

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSM 257
           K A      M ++G   N+  Y  + D L K G++D A  +   M  K    + +TY+S+
Sbjct: 345 KEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 404

Query: 258 VHNLCKAKRLPSASKLL 274
           V+ LCKA  +  A KL+
Sbjct: 405 VNGLCKAGNIDQAVKLM 421



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 108/226 (47%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++NGLCK    D A+++ + ++  GF P+ VTY  L+   CK+  +  A  +L+++
Sbjct: 400 TYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM 459

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D    P  +T+  +M     +   + G ++L  M  KG   +   Y ++I  +     +
Sbjct: 460 LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNM 519

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +  T+    M   GV  D  +YN LI  +CK   ++ A+ L  +M  +GF     ++  L
Sbjct: 520 RATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNAL 579

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           I G  K      AR   E M + G  ++ E YN   D    +GK++
Sbjct: 580 IKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKME 625



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           L+++  M+ KG   + + Y  VI    K G++ EA   + +M+++G+  D V Y TLI+ 
Sbjct: 208 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDG 267

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +CK G + +AY L DEM+K+    D  T+T +I GLC+ G +  A      M     + +
Sbjct: 268 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPD 327

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++D   K+GK+  A ++   M       +  TY+++   LCK   + +A++LL 
Sbjct: 328 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 387

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
              + G+ +      ++V+GL  +G   +A K+   + +A
Sbjct: 388 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVA 427



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 2/187 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++  CK+R    A  + R +      P +VT+N+L+ G C +G L     +
Sbjct: 431 PDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKL 490

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           LK + + G  PNA TY +++K  C RN   +   EI   M  KG   DG  Y  +I    
Sbjct: 491 LKWMLEKGIMPNATTYNSLIKQYCIRN-NMRATTEIYRGMCAKGVVPDGNTYNILIKGHC 549

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K   +KEA      MV  G  L + SYN LI  + K  K   A  L ++M ++G   D+ 
Sbjct: 550 KARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADRE 609

Query: 187 THTILID 193
            + I  D
Sbjct: 610 IYNIFAD 616



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   TFN+++NG C +   ++  ++ + + + G +P   TYN LIK  C    
Sbjct: 459 MLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNN 518

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R    I + +   G  P+  TY  ++K   + R  K    +   M  KG+      Y  
Sbjct: 519 MRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNA 578

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           +I  F K  +  EA +  EQM  +G+  D   YN   ++   EGK+E    L DE
Sbjct: 579 LIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDE 633


>gi|222619024|gb|EEE55156.1| hypothetical protein OsJ_02962 [Oryza sativa Japonica Group]
          Length = 428

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYT--DNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           M      P TAT+N+++   C +     D+A+R+FR + K    P+  +YN +I GLC+ 
Sbjct: 1   MRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGLCRR 56

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           GRL  AR +  E+  +G AP  +TYTT++    R   +   L++   M R+G   +   Y
Sbjct: 57  GRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTY 116

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            ++I    K GR   A + +++MV +    + ++Y+++I+  CKEG L  A  +LD M  
Sbjct: 117 SSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRL 176

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY-------NCIVDRLG 231
           QG + D      LI GLC AG    A  +L+ MN  G   N   +       + +V  L 
Sbjct: 177 QGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALC 236

Query: 232 KDGKIDHAINVFESMEVKDSFTYSSMVHNLCK 263
             G++  A  V++SM  +   T  +  H L +
Sbjct: 237 SKGEVVRAFQVYQSMRTRGISTKPTTFHLLVE 268



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 10/180 (5%)

Query: 141 MVTDGVQLDIVSYNTLINLYCKEG--KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           M   G      +YN L+  +C +    ++ A  +   + K     D  ++  +IDGLC+ 
Sbjct: 1   MRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPKP----DACSYNTVIDGLCRR 56

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTY 254
           G +  AR     M   G    +  Y  ++  L ++   D A+ +F+ M     + +  TY
Sbjct: 57  GRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTY 116

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           SS++  LCK  R  SA +LL   +K           +V+DGL   GC  +A +I  ++R+
Sbjct: 117 SSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRL 176


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 145/311 (46%), Gaps = 41/311 (13%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+  +++ LCK    D A  M R +   G  P+ VT++ LI GLCK G    A
Sbjct: 121 DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQA 180

Query: 65  RWILKELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYT---------FD 114
             +L+++   G   +   + TI+ + C +    +L  ++L  +  KG+T          +
Sbjct: 181 FRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVIN 240

Query: 115 G--------------------------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           G                          F +  +I    K  R+ EA   +E+MV  G   
Sbjct: 241 GFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSP 300

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++V+Y+T+IN  CK+G+++ AY L   ME++    +  TH ILIDGLCKA  I+ AR   
Sbjct: 301 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 360

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-----EVKDSFTYSSMVHNLCK 263
             M + G   ++  YN ++D L K  ++D A  +F+++        ++ TYS++ H    
Sbjct: 361 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 420

Query: 264 AKRLPSASKLL 274
             R+  A ++ 
Sbjct: 421 LGRMADACRIF 431



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 159/308 (51%), Gaps = 6/308 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++ GLC       AL  FR + K    P+++TY  L+  LCKAG+   A+ +L+E+   G
Sbjct: 98  LMKGLCDAGRVVEALEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQG 156

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV-KIGRLKEA 134
            AP+ +T++T++    +    +    +L  + ++G       + T+I     K   ++ A
Sbjct: 157 CAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELA 216

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
           +  +  ++  G    ++ +N +IN +CK   L++AY LL+ M ++G   + +T TILI G
Sbjct: 217 SKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITG 276

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS--- 251
           LCKA  +  A+  LE M   G   N+  Y+ +++ L K G++D A  +F+ ME ++    
Sbjct: 277 LCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPN 336

Query: 252 -FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
             T++ ++  LCKAKR+  A +L     ++G         +++DGL  S    EA ++  
Sbjct: 337 VVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQ 396

Query: 311 KIRMAKIS 318
            I  + +S
Sbjct: 397 TIPESGVS 404



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 157/355 (44%), Gaps = 43/355 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I    TP    FN+++NG CK +  D+A ++   + + G VP + T+ ILI GLCKA R
Sbjct: 223 VIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANR 282

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +L+++   G +PN +TY+T++    +  +     E+   M+R+    +   +  
Sbjct: 283 VGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNI 342

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-- 178
           +I    K  R++EA     +M   G   DI++YN+LI+  CK  +++ A+ L   + +  
Sbjct: 343 LIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG 402

Query: 179 ----------------------------------QGFECDKYTHTILIDGLCKAGNIKGA 204
                                             +GF  D  T+T LI   CK       
Sbjct: 403 VSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEV 462

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
              +E M   GF   +   + ++  L +    + AI +F+SM  +    D+  Y+ +V  
Sbjct: 463 VELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEG 522

Query: 261 LCKAKRLPSASKLLLSCLKSGVRIL---KSAQKAVVDGLRHSGCRREAKKIQSKI 312
           + +A +   A  +L   +    R      SA  A+V+ L   G   +AK++  K+
Sbjct: 523 MARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKM 577



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N  L+ LC+      AL +FR       +P   TY ILI+G   AG L  A  +L+E+  
Sbjct: 26  NCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKS 85

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           SG   NA+ +TT+MK      +    LE   AM  K    D   Y  ++ A  K G+  E
Sbjct: 86  SGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMA-KDCAPDVMTYTALVHALCKAGKFDE 144

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   + +MV  G   D V+++TLI+  CK G  E A+ +L+++ ++G          +I 
Sbjct: 145 AQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQ 204

Query: 194 GLC-KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            LC K  +++ A   L  +   GF   +  +N +++   K   +D A  + E M     V
Sbjct: 205 RLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCV 264

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            + FT++ ++  LCKA R+  A +LL   +  G          V++GL   G
Sbjct: 265 PNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQG 316



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 3/217 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T + +L GL +  +T+ A+++F  +   G   + + YN++++G+ +A +   A 
Sbjct: 474 FPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKAL 533

Query: 66  WILKEL---GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +L+++    D    P++     +++   +  K     ++L  M  +G+      Y  ++
Sbjct: 534 AVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLL 593

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +   ++ R  EAT   E MV+ G   +I + N +I+  C   K++ AY L+  M K G  
Sbjct: 594 SGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCC 653

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            D  T   LI G CK+G    AR  LE M + G + N
Sbjct: 654 PDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 690



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 7/279 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ + +G        +A R+F  L   GF P+L TY  LI   CK  R      +++E+
Sbjct: 410 TYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEM 469

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   T + ++   F     +  +++  +M  +G T D   Y  V+    +  + 
Sbjct: 470 ASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKH 529

Query: 132 KEATDYMEQMVTD---GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
            +A   +EQ++            + + L+   C+ GK + A  LL +M ++GF     ++
Sbjct: 530 DKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSY 589

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             L+ GL +      A    E M   G    +   N ++  L    K+D A  + + M  
Sbjct: 590 NRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSK 649

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                D  T ++++   CK+ R   A KLL    ++G+ 
Sbjct: 650 LGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLE 688



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 88/182 (48%), Gaps = 3/182 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGL---QKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +N+++ G+ +    D AL +   +   +   F P     + L++ LC+ G+   A+ +L 
Sbjct: 516 YNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLH 575

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++ + G A    +Y  ++    R +++    ++  AM   G   +      VI+      
Sbjct: 576 KMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAA 635

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++ +A + +++M   G   DI + NTLI  YCK G+ + A  LL+EM + G E +  TH 
Sbjct: 636 KVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHD 695

Query: 190 IL 191
           +L
Sbjct: 696 LL 697



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P  +T N++++ LC     D+A  + + + K G  P++ T N LI G CK+GR
Sbjct: 612 MVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGR 671

Query: 61  LRTARWILKELGDSGHAPNAITY 83
              AR +L+E+ ++G  PN  T+
Sbjct: 672 ADLARKLLEEMTEAGLEPNDTTH 694


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 142/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++ LCK+    +A  +F  +Q+ G  P+L TYN +I G C +GR   A 
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +   +P+ +TY  ++    +  K+    E+   M  +G   +   Y ++I  F
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 370

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A D    M T G   D+ ++ TLI+ YC   +++    LL EM ++G   + 
Sbjct: 371 CKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANT 430

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G C  G++  A    + M   G   ++   N ++D L  +GK+  A+ +F++
Sbjct: 431 VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKA 490

Query: 246 ME--------------------------------------------------VKDSFTYS 255
           M+                                                  V D+ TYS
Sbjct: 491 MQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM+  LCK  RL  A+++ +S
Sbjct: 551 SMIDGLCKQSRLDEATQMFVS 571



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 153/352 (43%), Gaps = 40/352 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +L+GLC       AL  F  + +    P +VT+  L+ GLC+ GR+  A 
Sbjct: 145 LHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 66  WILKEL----------------------GDSGHA--------------PNAITYTTIMKC 89
            +L  +                      GD+  A              PN + Y+ I+  
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDS 264

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             ++ ++     + + M+ KG   D F Y ++I  F   GR  +A   +++M+   +  D
Sbjct: 265 LCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD 324

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +V+YN LIN + KEGK   A  L DEM  +G   +  T+  +IDG CK   +  A     
Sbjct: 325 VVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFY 384

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M   G   ++  +  ++D      +ID  + +   M     V ++ TY++++H  C   
Sbjct: 385 LMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVG 444

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            L +A  L    + SGV         ++DGL  +G  ++A ++   ++ +K+
Sbjct: 445 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 496



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 15/297 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T+N M++G CK    D A  MF  +   G  P++ T+  LI G C A R
Sbjct: 351 MLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKR 410

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+   G   N +TY T++            L++   M   G   D     T
Sbjct: 411 IDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 470

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             +GV+ D+++YN LI     EGK   A
Sbjct: 471 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 530

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T++ +IDGLCK   +  A      M    F  N+  +N +++ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 590

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             K G++D  + +F  M     V D+  Y ++++   K   +  A  +    + SGV
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 647



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 5/268 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FNI++   C       AL  F  + K G  P++VT+  L+ GLC   R+  A     ++
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            ++   PN +T+TT+M    R  +    + +L  M   G       Y T++    K G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 132 KEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
             A + + +M     +  ++V Y+ +I+  CK+G+   A  L  EM+++G   D +T+  
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           +I G C +G    A   L+ M +     ++  YN +++   K+GK   A  +++ M    
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRG 355

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + ++ TY+SM+   CK  RL +A  + 
Sbjct: 356 IIPNTITYNSMIDGFCKQDRLDAAEDMF 383



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 40/310 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  ++  + +    D  + +++ +++     ++ ++NILIK  C   +L  A   
Sbjct: 77  PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALST 136

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G  P+ +T+TT++                             G C        
Sbjct: 137 FGKITKLGLHPDVVTFTTLLH----------------------------GLCVE------ 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA D+  QM     + ++V++ TL+N  C+EG++  A  LLD M + G +  + T
Sbjct: 163 -DRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +  ++DG+CK G+   A   L  M ++     N+  Y+ I+D L KDG+   A N+F  M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           + K    D FTY+SM+   C + R   A +LL   L+  +        A+++     G  
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 303 REAKKIQSKI 312
            EA ++  ++
Sbjct: 342 FEAAELYDEM 351



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI++ GL        A  ++  +   G VP+ +TY+ +I GLCK  RL  A 
Sbjct: 507 VEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +G    +PN +T+ T++    +  +   GLE+   M R+G   D   Y T+I  F
Sbjct: 567 QMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 626

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
            K+G +  A D  ++M++ GV  D ++   ++  +  + +LE A  +L++++
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 678



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 5/263 (1%)

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  ++  S   P+ + +  +M    R  +  L + +   M+RK    D + +  
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F    +L  A     ++   G+  D+V++ TL++  C E ++  A     +M +  
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T T L++GLC+ G I  A   L+ M + G       Y  IVD + K G    A+
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 241 NVFESME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           N+   ME     + +   YS+++ +LCK  R   A  L     + G+        +++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
              SG   +A+++  ++   KIS
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKIS 322



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 92/201 (45%), Gaps = 6/201 (2%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L++A D    M+       +V +  L+ +  +  + +    L  +ME++   
Sbjct: 52  SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN- 241
           CD Y+  ILI   C    +  A      + K+G   ++  +  ++  L  + ++  A++ 
Sbjct: 112 CDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDF 171

Query: 242 ---VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
              +FE+    +  T++++++ LC+  R+  A  LL   ++ G++  +     +VDG+  
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 299 SGCRREAKKIQSKIRMAKISH 319
            G    A  +  K  M ++SH
Sbjct: 232 KGDTVSALNLLRK--MEEVSH 250


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 139/270 (51%), Gaps = 4/270 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           NI+L GLC+N     A+ + R ++++  +P++ +YN +I+G C+   L  A  +  E+  
Sbjct: 146 NILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKG 205

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           SG + + +T+  ++    +  K    +  L  MK  G   D   Y ++I  F   G L  
Sbjct: 206 SGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDR 265

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
                ++++  G     ++YNTLI  +CK G+L+ A  + + M ++G   + YT+T LID
Sbjct: 266 GKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLID 325

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           GLC  G  K A   L  M +   + N   YN I+++L KDG +  A+ + E M+ +    
Sbjct: 326 GLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRP 385

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           D+ TY+ ++  LC    L  ASKLL   LK
Sbjct: 386 DNITYNILLGGLCAKGDLDEASKLLYLMLK 415



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 155/313 (49%), Gaps = 6/313 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I+++  CK    D A+   + ++  G   +LV Y  LI+G C  G L   + +  E
Sbjct: 213 VTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDE 272

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + + G +P AITY T+++   +  + K   EI   M  +G   + + Y  +I     +G+
Sbjct: 273 VLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGK 332

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            KEA   +  M+    + + V+YN +IN  CK+G +  A  +++ M+K+    D  T+ I
Sbjct: 333 TKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNI 392

Query: 191 LIDGLCKAGNIKGAR--LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF----E 244
           L+ GLC  G++  A   L+L   +    D ++ +YN ++  L K+ ++  A++++    E
Sbjct: 393 LLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE 452

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
            +   D  T + ++++  KA  +  A +L      S +        A++DG   +G    
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNV 512

Query: 305 AKKIQSKIRMAKI 317
           AK +  K+R++++
Sbjct: 513 AKGLLCKMRVSEL 525



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 146/292 (50%), Gaps = 17/292 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++ G C+ +  + AL +   ++  G    LVT+ ILI   CKAG++  A 
Sbjct: 173 LMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAM 232

Query: 66  WILKELGDSGHAPNAITYTTIMK----CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             LKE+   G   + + YT++++    C   +R   L  E+L     +G +     Y T+
Sbjct: 233 GFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVL----ERGDSPCAITYNTL 288

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F K+G+LKEA++  E M+  GV+ ++ +Y  LI+  C  GK + A   L+ M ++  
Sbjct: 289 IRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDE 348

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E +  T+ I+I+ LCK G +  A   +E M K     +   YN ++  L   G +D A  
Sbjct: 349 EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASK 408

Query: 242 VFESMEVKDSFT------YSSMVHNLCKAKRLPSA---SKLLLSCLKSGVRI 284
           +   M    S+T      Y++++H LCK  RL  A     LL+  L +G R+
Sbjct: 409 LLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRV 460



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 143/320 (44%), Gaps = 42/320 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD +PC  T+N ++ G CK      A  +F  + + G  P + TY  LI GLC  G+ + 
Sbjct: 277 GD-SPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A   L  + +    PNA+TY  I+    ++      +EI+  MK++    D   Y  ++ 
Sbjct: 336 ALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLG 395

Query: 124 AFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLD------- 174
                G L EA+  +  M+ D      D++SYN LI+  CKE +L  A  + D       
Sbjct: 396 GLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLG 455

Query: 175 ------------------------EMEKQGFEC----DKYTHTILIDGLCKAGNIKGARL 206
                                   E+ KQ  +     +  T+T +IDG CK G +  A+ 
Sbjct: 456 AGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKG 515

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLC 262
            L  M       ++  YNC++  L K+G +D A  +FE M+  ++F    +++ M+    
Sbjct: 516 LLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSL 575

Query: 263 KAKRLPSASKLLLSCLKSGV 282
           KA  + SA  LL+   ++G+
Sbjct: 576 KAGDIKSAESLLVGMSRAGL 595



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 2/241 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTAR 65
           P   T+NI+L GLC     D A ++   + K      P++++YN LI GLCK  RL  A 
Sbjct: 385 PDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQAL 444

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   L +   A + +T   ++    +       +E+   +       +   Y  +I  F
Sbjct: 445 DIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L  A   + +M    +Q  +  YN L++  CKEG L+ A+ L +EM++     D 
Sbjct: 505 CKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDV 564

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  I+IDG  KAG+IK A   L  M++ G   +L  Y+ +++R  K G +D AI+ F+ 
Sbjct: 565 VSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDK 624

Query: 246 M 246
           M
Sbjct: 625 M 625



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 112/243 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +++GLCK      AL ++  L +     + VT NIL+    KAG +  A  +
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++ DS    N+ TYT ++    +     +   +L  M+        F Y  ++++  K
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L +A    E+M  D    D+VS+N +I+   K G +++A  LL  M + G   D +T
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI+   K G +  A    + M   GF+ +    + ++      G+ D    + + + 
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLV 661

Query: 248 VKD 250
            KD
Sbjct: 662 DKD 664



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 118/263 (44%), Gaps = 4/263 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++  L ++R  + A   +R + +       V+ + L++   +  +   A  +L  +   G
Sbjct: 78  LMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRG 137

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            A N   +  ++K   RN +    + +L  M+R     D F Y TVI  F +   L++A 
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +   +M   G    +V++  LI+ +CK GK++ A   L EM+  G E D   +T LI G 
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGF 257

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           C  G +   +   + + + G       YN ++    K G++  A  +FE M  +    + 
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNV 317

Query: 252 FTYSSMVHNLCKAKRLPSASKLL 274
           +TY+ ++  LC   +   A + L
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQPL 340



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 88/189 (46%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           + T+  M++G CK    + A  +   ++     P +  YN L+  LCK G L  A  + +
Sbjct: 494 SDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFE 553

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+    + P+ +++  ++    +    K    +L  M R G + D F Y  +I  F+K+G
Sbjct: 554 EMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLG 613

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L EA  + ++MV  G + D    ++++     +G+ +    L+ ++  +    DK    
Sbjct: 614 YLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTC 673

Query: 190 ILIDGLCKA 198
            ++D +C +
Sbjct: 674 TVMDYMCNS 682



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +L P    +N +L+ LCK    D A R+F  +Q+    P++V++NI+I G  KAG 
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGD 579

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG-----LEILSAMKRKGYTFDG 115
           +++A  +L  +  +G +P+  TY+ ++     NR  KLG     +     M   G+  D 
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLI-----NRFLKLGYLDEAISFFDKMVDSGFEPDA 634

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
               +V+   +  G   + T+ ++++V   + LD     T+++  C
Sbjct: 635 HICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMC 680



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 39/233 (16%)

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
            F    ++A  V+    + A  +  +M+     ++ VS + L+  Y +  K   A+ +L 
Sbjct: 72  AFAGSNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLA 131

Query: 175 EMEKQGFECDKYTHTILIDGLCKA------------------------------GNIKGA 204
            M K+GF  + Y H IL+ GLC+                               G  +G 
Sbjct: 132 LMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGK 191

Query: 205 RLH--LEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYS 255
            L   LE  N++   G   +L  +  ++D   K GK+D A+   + M+      D   Y+
Sbjct: 192 ELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYT 251

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           S++   C    L     L    L+ G          ++ G    G  +EA +I
Sbjct: 252 SLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEI 304


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 20/316 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P T+T++ +LN LC     + A  +F  +++ G V ++ TY I++   CKAG 
Sbjct: 433 MIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 492

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR    E+ + G  PN +TYT ++    + +K     E+   M  +G   +   Y  
Sbjct: 493 IEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSA 552

Query: 121 VIAAFVKIGRLKEATDYMEQM-----VTD-----------GVQLDIVSYNTLINLYCKEG 164
           +I    K G++++A    E+M     V D             + ++V+Y  L++ +CK  
Sbjct: 553 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 612

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           ++E A  LLD M  +G E ++  +  LIDGLCK G +  A+     M++ GF + L  Y+
Sbjct: 613 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 672

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++DR  K  + D A  V   M       +   Y+ M+  LCK  +   A KL+    + 
Sbjct: 673 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 732

Query: 281 GVRILKSAQKAVVDGL 296
           G +       A++DG 
Sbjct: 733 GCQPNVVTYTAMIDGF 748



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 20/310 (6%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+  +++   K +    A  +F  +   G +P +VTY+ LI G CKAG++  A  
Sbjct: 509 TPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQ 568

Query: 67  IL----------------KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           I                 K+  D+   PN +TY  ++    ++ + +   ++L AM  +G
Sbjct: 569 IFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 628

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              +   Y  +I    K+G+L EA +   +M   G    + +Y++LI+ Y K  + + A 
Sbjct: 629 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 688

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +L +M +     +   +T +IDGLCK G    A   ++ M + G   N+  Y  ++D  
Sbjct: 689 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 748

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
           G  GKI+  + + E M  K    +  TY  ++ + CK   L  A  LL    ++      
Sbjct: 749 GMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHT 808

Query: 287 SAQKAVVDGL 296
           +  + V++G 
Sbjct: 809 AGYRKVIEGF 818



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 14/279 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +L G    +      R+   +   G  P    +N L+   C +G    A  +
Sbjct: 294 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 353

Query: 68  LKELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEIL-------SAMKRKGYTFDGFGYC 119
           LK++   GH P  + Y  ++   C    K  L  ++L       S M   G   +     
Sbjct: 354 LKKMVKCGHMPGYVVYNILIGSIC--GDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVS 411

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +        G+ ++A   + +M+  G   D  +Y+ ++N  C   K+E A+LL +EM++ 
Sbjct: 412 SFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRG 471

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D YT+TI++D  CKAG I+ AR     M ++G   N+  Y  ++    K  K+ +A
Sbjct: 472 GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYA 531

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             +FE+M     + +  TYS+++   CKA ++  A ++ 
Sbjct: 532 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF 570



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 157/321 (48%), Gaps = 19/321 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++GLCK    D A  +   + +HGF   L TY+ LI    K  R   A  +
Sbjct: 631 PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 690

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++ ++  APN + YT ++    +  K     +++  M+ KG   +   Y  +I  F  
Sbjct: 691 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGM 750

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG+++   + +E+M + GV  + V+Y  LI+  CK G L+ A+ LL+EM++  +      
Sbjct: 751 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 810

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVDRLGKDGKIDHAINVFE 244
           +  +I+G  K   I+   L    +++IG D     L  Y  ++D L K  +++ A+ + E
Sbjct: 811 YRKVIEGFNKEF-IESLGL----LDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLE 865

Query: 245 SME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            +       V  S TY+S++ +LC A ++ +A +L     K GV     +  +++ GL  
Sbjct: 866 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL-- 923

Query: 299 SGCRREAKKIQSKIRMAKISH 319
               R +K  ++ + +  ISH
Sbjct: 924 ---FRNSKISEALLLLDFISH 941



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 145/316 (45%), Gaps = 22/316 (6%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYT------DNALRMFRGLQKHGFVPELVTYNILIKGLC 56
           CG + P    +NI++  +C ++ +      D A + +  +   G V   +  +   + LC
Sbjct: 360 CGHM-PGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLC 418

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
            AG+   A  +++E+   G  P+  TY+ ++       K +L   +   MKR G   D +
Sbjct: 419 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY 478

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  ++ +F K G +++A  +  +M   G   ++V+Y  LI+ Y K  K+  A  L + M
Sbjct: 479 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 538

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G   +  T++ LIDG CKAG ++ A    E M       +++ Y    D        
Sbjct: 539 LSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYD-------- 590

Query: 237 DHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                  ++ E  +  TY +++   CK+ R+  A KLL +    G    +    A++DGL
Sbjct: 591 -------DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 643

Query: 297 RHSGCRREAKKIQSKI 312
              G   EA+++++++
Sbjct: 644 CKVGKLDEAQEVKTEM 659



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 4/242 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +  M++GLCK   TD A ++ + +++ G  P +VTY  +I G    G+
Sbjct: 694 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 753

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + T   +L+ +G  G APN +TY  ++  C +N    +   +L  MK+  +     GY  
Sbjct: 754 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 813

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K     E+   ++++  D     +  Y  LI+   K  +LE A  LL+E+    
Sbjct: 814 VIEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFS 871

Query: 181 FECDKY--THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
                Y  T+  LI+ LC A  ++ A      M K G    ++++  ++  L ++ KI  
Sbjct: 872 ATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISE 931

Query: 239 AI 240
           A+
Sbjct: 932 AL 933



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 148/339 (43%), Gaps = 48/339 (14%)

Query: 19  GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
            LCK      AL +   ++   FVP+ V Y  LI GLC+A     A   L  +  +   P
Sbjct: 238 SLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 294

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGF--GYCT---------VI 122
           N +TY+T++  C   ++      +L+ M  +G       F+     YCT         ++
Sbjct: 295 NVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLL 354

Query: 123 AAFVKIGRL----------------KEATDY---------MEQMVTDGVQLDIVSYNTLI 157
              VK G +                K++ ++           +M+  GV L+ ++ ++  
Sbjct: 355 KKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFT 414

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
              C  GK E A+ ++ EM  QGF  D  T++ +++ LC A  ++ A L  E M + G  
Sbjct: 415 RCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLV 474

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
           +++  Y  +VD   K G I+ A   F  M       +  TY++++H   KAK++  A++L
Sbjct: 475 ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANEL 534

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             + L  G         A++DG   +G   +A +I  ++
Sbjct: 535 FETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 573



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 124/342 (36%), Gaps = 87/342 (25%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C+N     AL     L+   F P   TYN LI+   KA RL +A  I +E+ 
Sbjct: 162 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS 221

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            +    +  T       CF     K+G   E L+ ++ + +  D   Y  +I+   +   
Sbjct: 222 LANLRMDGFTLR-----CFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASL 276

Query: 131 LKEATDYMEQMVTDGVQLDIVSY-----------------------------------NT 155
            +EA D++ +M       ++V+Y                                   N+
Sbjct: 277 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 336

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG--------------------- 194
           L++ YC  G    AY LL +M K G       + ILI                       
Sbjct: 337 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYS 396

Query: 195 --------------------LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                               LC AG  + A   +  M   GF  +   Y+ +++ L    
Sbjct: 397 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 456

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
           K++ A  +FE M+    V D +TY+ MV + CKA  +  A K
Sbjct: 457 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARK 498



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV----TYNILIKGLCKAGR 60
           D  P  + + ++++ L K +  + ALR+   +    F   LV    TYN LI+ LC A +
Sbjct: 836 DTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT--FSATLVDYSSTYNSLIESLCLANK 893

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103
           + TA  +  E+   G  P   ++ +++K  FRN K    L +L
Sbjct: 894 VETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 936


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 20/316 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P T+T++ +LN LC     + A  +F  +++ G V ++ TY I++   CKAG 
Sbjct: 474 MIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 533

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR    E+ + G  PN +TYT ++    + +K     E+   M  +G   +   Y  
Sbjct: 534 IEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSA 593

Query: 121 VIAAFVKIGRLKEATDYMEQM-----VTD-----------GVQLDIVSYNTLINLYCKEG 164
           +I    K G++++A    E+M     V D             + ++V+Y  L++ +CK  
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           ++E A  LLD M  +G E ++  +  LIDGLCK G +  A+     M++ GF + L  Y+
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++DR  K  + D A  V   M       +   Y+ M+  LCK  +   A KL+    + 
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773

Query: 281 GVRILKSAQKAVVDGL 296
           G +       A++DG 
Sbjct: 774 GCQPNVVTYTAMIDGF 789



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 20/310 (6%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+  +++   K +    A  +F  +   G +P +VTY+ LI G CKAG++  A  
Sbjct: 550 TPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQ 609

Query: 67  IL----------------KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           I                 K+  D+   PN +TY  ++    ++ + +   ++L AM  +G
Sbjct: 610 IFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 669

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              +   Y  +I    K+G+L EA +   +M   G    + +Y++LI+ Y K  + + A 
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +L +M +     +   +T +IDGLCK G    A   ++ M + G   N+  Y  ++D  
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 789

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
           G  GKI+  + + E M  K    +  TY  ++ + CK   L  A  LL    ++      
Sbjct: 790 GMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHT 849

Query: 287 SAQKAVVDGL 296
           +  + V++G 
Sbjct: 850 AGYRKVIEGF 859



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 10/277 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +L G    +      R+   +   G  P    +N L+   C +G    A  +
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRK------YKLGLEILSAMKRKGYTFDGFGYCTV 121
           LK++   GH P  + Y  ++     ++         L  +  S M   G   +     + 
Sbjct: 395 LKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSF 454

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
                  G+ ++A   + +M+  G   D  +Y+ ++N  C   K+E A+LL +EM++ G 
Sbjct: 455 TRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 514

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D YT+TI++D  CKAG I+ AR     M ++G   N+  Y  ++    K  K+ +A  
Sbjct: 515 VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANE 574

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           +FE+M     + +  TYS+++   CKA ++  A ++ 
Sbjct: 575 LFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF 611



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++GLCK    D A  +   + +HGF   L TY+ LI    K  R   A  +
Sbjct: 672 PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 731

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++ ++  APN + YT ++    +  K     +++  M+ KG   +   Y  +I  F  
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGM 791

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG+++   + +E+M + GV  + V+Y  LI+  CK G L+ A+ LL+EM++  +      
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 851

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVDRLGKDGKIDHAINVFE 244
           +  +I+G  K   I+     L  +++IG D     L  Y  ++D L K  +++ A+ + E
Sbjct: 852 YRKVIEGFNKEF-IES----LGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLE 906

Query: 245 SME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +       V  S TY+S++ +LC A ++ +A +L     K GV
Sbjct: 907 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGV 950



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 145/316 (45%), Gaps = 22/316 (6%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYT------DNALRMFRGLQKHGFVPELVTYNILIKGLC 56
           CG + P    +NI++  +C ++ +      D A + +  +   G V   +  +   + LC
Sbjct: 401 CGHM-PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLC 459

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
            AG+   A  +++E+   G  P+  TY+ ++       K +L   +   MKR G   D +
Sbjct: 460 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY 519

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  ++ +F K G +++A  +  +M   G   ++V+Y  LI+ Y K  K+  A  L + M
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G   +  T++ LIDG CKAG ++ A    E M       +++ Y    D        
Sbjct: 580 LSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYD-------- 631

Query: 237 DHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                  ++ E  +  TY +++   CK+ R+  A KLL +    G    +    A++DGL
Sbjct: 632 -------DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684

Query: 297 RHSGCRREAKKIQSKI 312
              G   EA+++++++
Sbjct: 685 CKVGKLDEAQEVKTEM 700



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 7/254 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +  M++GLCK   TD A ++ + +++ G  P +VTY  +I G    G+
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + T   +L+ +G  G APN +TY  ++  C +N    +   +L  MK+  +     GY  
Sbjct: 795 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 854

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K     E+   ++++  D     +  Y  LI+   K  +LE A  LL+E+    
Sbjct: 855 VIEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFS 912

Query: 181 FECDKY--THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
                Y  T+  LI+ LC A  ++ A      M K G    ++++  ++  L ++ KI  
Sbjct: 913 ATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISE 972

Query: 239 A---INVFESMEVK 249
           A   ++    ME++
Sbjct: 973 ALLLLDFISHMEIQ 986



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 144/339 (42%), Gaps = 48/339 (14%)

Query: 19  GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
            LCK      AL +   ++   FVP+ V Y  LI GLC+A     A   L  +  +   P
Sbjct: 279 SLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGF--GYCT---------VI 122
           N +TY+T++  C   ++      +L+ M  +G       F+     YCT         ++
Sbjct: 336 NVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLL 395

Query: 123 AAFVKIGRLKEATDY-------------------------MEQMVTDGVQLDIVSYNTLI 157
              VK G +     Y                           +M+  GV L+ ++ ++  
Sbjct: 396 KKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFT 455

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
              C  GK E A+ ++ EM  QGF  D  T++ +++ LC A  ++ A L  E M + G  
Sbjct: 456 RCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLV 515

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
           +++  Y  +VD   K G I+ A   F  M       +  TY++++H   KAK++  A++L
Sbjct: 516 ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANEL 575

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             + L  G         A++DG   +G   +A +I  ++
Sbjct: 576 FETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 124/342 (36%), Gaps = 87/342 (25%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C+N     AL     L+   F P   TYN LI+   KA RL +A  I +E+ 
Sbjct: 203 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS 262

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            +    +  T       CF     K+G   E L+ ++ + +  D   Y  +I+   +   
Sbjct: 263 LANLRMDGFTLR-----CFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASL 317

Query: 131 LKEATDYMEQMVTDGVQLDIVSY-----------------------------------NT 155
            +EA D++ +M       ++V+Y                                   N+
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG--------------------- 194
           L++ YC  G    AY LL +M K G       + ILI                       
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYS 437

Query: 195 --------------------LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                               LC AG  + A   +  M   GF  +   Y+ +++ L    
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 497

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
           K++ A  +FE M+    V D +TY+ MV + CKA  +  A K
Sbjct: 498 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARK 539


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+NIM++ + K    + A  +F  ++  G +P+ VTYN +I G  K GR
Sbjct: 124 MIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGR 183

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L    +  +E+      P+ ITY +++ C  ++ K   GLE    MK+ G   +   Y T
Sbjct: 184 LDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYST 243

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ AF K   +++A  +   M   G   +  +Y +L++  CK G L  A+ L +EM + G
Sbjct: 244 LVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVG 303

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+T LIDGLC A  +K A      M   G   NL +YN ++    K   +D A+
Sbjct: 304 VEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRAL 363

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ++ +    D   Y + +  LC  +++ +A  ++    ++G++        ++D  
Sbjct: 364 ELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAY 423

Query: 297 RHSGCRREA 305
             SG   E 
Sbjct: 424 FKSGNPTEG 432



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 1/247 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  A++N +++G  K +  D AL +   L+  G  P+L+ Y   I GLC   +
Sbjct: 334 MVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEK 393

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ ++ E+ ++G   N + YTT+M   F++     GL +L  M+   +      +C 
Sbjct: 394 IEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCV 453

Query: 121 VIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +I    K   + +A DY  +M  D G+Q +   Y  +I+  CKE +++AA  L ++M ++
Sbjct: 454 LIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQE 513

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D+  +T L+DG  K GN+  A    + M +IG   +L AY  +V    +  ++  A
Sbjct: 514 GLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKA 573

Query: 240 INVFESM 246
            +  E M
Sbjct: 574 RSFLEEM 580



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 152/317 (47%), Gaps = 7/317 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +++ +++  CK      A++ +  +++ G VP   TY  L+   CK G L  A 
Sbjct: 234 LKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAF 293

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G   N +TYT ++       + K   ++   M   G   +   Y  +I  F
Sbjct: 294 RLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGF 353

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK   +  A + + ++   G+Q D++ Y T I   C   K+EAA ++++EM++ G + + 
Sbjct: 354 VKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANT 413

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T L+D   K+GN       LE M ++  +  +  +  ++D L K+  +  AI+ F  
Sbjct: 414 LIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGR 473

Query: 246 ME-----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M        ++  Y++M+  LCK  ++ +A+ L     + G+   ++A  +++DG    G
Sbjct: 474 MSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQG 533

Query: 301 CRREAKKIQSKIRMAKI 317
              EA  ++ K  MA+I
Sbjct: 534 NMLEALALRDK--MAEI 548



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 138/294 (46%), Gaps = 4/294 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ + + L      + A + F  +++    P+  + N L+    K G+    + 
Sbjct: 60  VPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKR 119

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             K++  +G  P   TY  ++ C ++    +    +   MK +G   D   Y ++I  + 
Sbjct: 120 FFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYG 179

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+GRL +   + E+M +   + D+++YN+LIN +CK GKL        EM++ G + +  
Sbjct: 180 KVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVV 239

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ES 245
           +++ L+D  CK   ++ A      M ++G   N   Y  +VD   K G +  A  +  E 
Sbjct: 240 SYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEM 299

Query: 246 MEVKDSF---TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +EV   +   TY++++  LC A+R+  A KL    + +GV    ++  A++ G 
Sbjct: 300 LEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGF 353



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 1/141 (0%)

Query: 12  TFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           TF ++++GLCKN+    A+  F R     G  P    Y  +I GLCK  +++ A  + ++
Sbjct: 450 TFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQ 509

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+   YT++M    +       L +   M   G   D   Y +++  F +  +
Sbjct: 510 MAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQ 569

Query: 131 LKEATDYMEQMVTDGVQLDIV 151
           L++A  ++E+M+ + +  D V
Sbjct: 570 LQKARSFLEEMIGEEILPDEV 590


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 116/227 (51%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++ GLC       AL +F  +   GF P +VTY  LI GLCK G    A  +
Sbjct: 113 PDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRL 172

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +      P+ + YT+I+    ++R+      + S M  +G + D F Y +++ A   
Sbjct: 173 LRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCN 232

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  + QMV   +  D+V ++T+++  CKEGK+  A+ ++D M ++G E D  T
Sbjct: 233 LCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVT 292

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +T L+DG C    +  A    + M + GF  ++ +Y  +++   KDG
Sbjct: 293 YTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDG 339



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 122/278 (43%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +L  + K ++    L +   +   G  P + T NILI   C   R+  A  +
Sbjct: 43  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 102

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+  T+TT+++      K    L +   M  +G+  +   Y T+I    K
Sbjct: 103 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G    A   +  M     Q D+V Y ++I+  CK+ ++  A+ L  +M  QG   D +T
Sbjct: 163 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 222

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+  LC     K     L  M       ++  ++ +VD L K+GK+  A  + + M 
Sbjct: 223 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 282

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +    D  TY++++   C    +  A K+    ++ G
Sbjct: 283 QRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 320



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 34/280 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK   T  A+R+ R +++    P++V Y  +I  LCK  +
Sbjct: 141 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQ 200

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++   G +P+  TYT+++       ++K    +L+ M       D   + T
Sbjct: 201 VTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFST 260

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+ A  K G++ EA + ++ M+  GV+ D+V+Y TL++ +C + +++ A  + D M ++G
Sbjct: 261 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 320

Query: 181 FECDKYTHTILID----------------GLCK--AGNIKG----------------ARL 206
           F  D  ++T LI+                GL K     +KG                 R 
Sbjct: 321 FAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDKMKLFEKGRT 380

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            L  M       N+  ++ +VD L K+GK+  A +V + M
Sbjct: 381 LLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMM 420



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 6/274 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D+AL  F  L      P +V +  L+  + K     T   +  ++   G  PN  T   +
Sbjct: 27  DDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNIL 86

Query: 87  MKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +   C  NR       +L+ + + G+  D   + T+I      G++ EA    ++M+ +G
Sbjct: 87  INSFCHLNR-VGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 145

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            Q ++V+Y TLIN  CK G   AA  LL  ME+   + D   +T +ID LCK   +  A 
Sbjct: 146 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 205

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                M   G   ++  Y  +V  L    +  H   +   M     + D   +S++V  L
Sbjct: 206 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 265

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           CK  ++  A +++   ++ GV         ++DG
Sbjct: 266 CKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG 299



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 34/216 (15%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T+  +++ LC      +   +   +     +P++V ++ ++  LCK G+
Sbjct: 211 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGK 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I+  +   G  P+ +TYTT+M       +    +++   M RKG+  D   Y T
Sbjct: 271 VTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTT 330

Query: 121 VIAAFVK-----------IGRLKEATD-----------------------YMEQMVTDGV 146
           +I A  K           IG +KE  D                        + +MV   +
Sbjct: 331 LINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSKI 390

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             ++V ++T+++  CKEGK+  A+ ++D M K+G E
Sbjct: 391 MPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE 426



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 34/185 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+ +++ LCK      A  +   + + G  P++VTY  L+ G C    
Sbjct: 246 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSE 305

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC------------------------------- 89
           +  A  +   +   G AP+ I+YTT++                                 
Sbjct: 306 MDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVE 365

Query: 90  CFRNRKYKL---GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
             R  K KL   G  +L+ M       +   + TV+ A  K G++ EA D ++ M+  GV
Sbjct: 366 VIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGV 425

Query: 147 QLDIV 151
           + + V
Sbjct: 426 EPNAV 430


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 8/313 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N + +  C+      A  +   ++K    P  VT N ++ GLC  GR+  A   
Sbjct: 244 PNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEF 303

Query: 68  LKE---LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +E   +       NA+TY+T++          + +E+   M  +G + D   Y T+I+ 
Sbjct: 304 FREKRTVWPEARG-NAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISG 362

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + GRL +A      M   G QLD  +YN LI  +C+  +L  AY LL EM++ G + D
Sbjct: 363 LTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPD 422

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT+  L+ GLCKAG+       L  M   G   ++  +  ++    K G+ID A+ +F 
Sbjct: 423 VYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFR 482

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           SM+      ++  Y++++  LCK++    A +L     +  V    +   A++ GLR   
Sbjct: 483 SMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKN 542

Query: 301 CRREAKKIQSKIR 313
              +A ++   +R
Sbjct: 543 MPEKAFELMDLMR 555



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 136/328 (41%), Gaps = 45/328 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +  G   P T+ FN +L+ L +        ++F  ++     P +VTY IL+KGLCKAGR
Sbjct: 128 LAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGR 187

Query: 61  LRTARWILKELGDS---------------------------------------GHAPNAI 81
           +  A  +L  +                                          G APN +
Sbjct: 188 VGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTV 247

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ- 140
           TY  +     R     +  E+++ M+++  T +     T++     +GR+  A ++  + 
Sbjct: 248 TYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREK 307

Query: 141 -MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
             V    + + V+Y+TL+  +     +  A  L  EM  +G   D   +  +I GL +AG
Sbjct: 308 RTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAG 367

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYS 255
            +  A      M K GF  + +AYN ++    +  +++ A  +   M+      D +TY+
Sbjct: 368 RLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYN 427

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +++  LCKA    +  +LL   +  G R
Sbjct: 428 TLLSGLCKAGDFLAVDELLGKMIDGGCR 455



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 90/189 (47%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +  M++GL +    D+A  M   ++K GF  +   YNILI G C+  RL  A  
Sbjct: 350 SPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYE 409

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E+ ++G  P+  TY T++    +   +    E+L  M   G       + T+I  + 
Sbjct: 410 LLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYC 469

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G++ EA      M   G+Q + V YNTLI+  CK      A  L DEM ++    +  
Sbjct: 470 KVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVT 529

Query: 187 THTILIDGL 195
           T   L+ GL
Sbjct: 530 TFNALLKGL 538



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 59/143 (41%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI G   P   TF  +++G CK    D ALR+FR + + G  P  V YN LI  LCK+  
Sbjct: 449 MIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRD 508

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  E+ +     N  T+  ++K        +   E++  M+    T D      
Sbjct: 509 TSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDI 568

Query: 121 VIAAFVKIGRLKEATDYMEQMVT 143
           ++     IG       +M+   T
Sbjct: 569 LMEWLPVIGETDRLKHFMQHDTT 591



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           +AA  L D +       D      L+D L +AG++ G       M       N+  Y  +
Sbjct: 119 DAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGIL 178

Query: 227 VDRLGKDGKIDHAINVFESME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
           V  L K G++  A++V + M         D    +++V  LCK  RL  A K +   ++S
Sbjct: 179 VKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRS 238


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 53/344 (15%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTAR 65
           P   ++NI+LNGLC    +  AL +   +   G    P++V+Y+ +I G  K G L    
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL---- 104

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++ D   +PN +TY +I+    + +     +E+L+ M + G   D   Y +++  F
Sbjct: 105 ---DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 161

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD- 184
              G+ KEA  ++++M +DGV+ D+V+YN+L++  CK G+   A  + D M K+G + D 
Sbjct: 162 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 185 ----------------------------------KYTHTILIDGLCKAGNIKGARLHLEY 210
                                              Y  +IL+    K   ++ A L    
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 281

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M + G + N   Y  ++D L K G+++ A+  FE M  +    DS  Y+S++H+LC   +
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
              A +L L  L  G+ +      +++D    S C +E + I+S
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSIID----SHC-KEGRVIES 380



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 144/282 (51%), Gaps = 4/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++  LCK +  D A+ +   + K G +P+ +TYN ++ G C +G+ + A 
Sbjct: 112 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 171

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     +I  +M ++G   D   Y T++  +
Sbjct: 172 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGY 231

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ L+  Y K+ K+E A L+  +M +QG   + 
Sbjct: 232 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 291

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +ID LCK+G ++ A L+ E M   G   +   YN ++  L    K + A  +F  
Sbjct: 292 VTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLE 351

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M  +     +  ++S++ + CK  R+  + KL    ++ GV+
Sbjct: 352 MLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVK 393



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 140/339 (41%), Gaps = 49/339 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++G C +     A+   + ++  G  P++VTYN L+  LCK GR
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 201

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-------------------------------- 88
              AR I   +   G  P+  TY T+++                                
Sbjct: 202 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 261

Query: 89  --CCF-RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
             C + +  K +  + + S M+++G   +   Y TVI    K GR+++A  Y EQM+ +G
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 321

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++ D + YN+LI+  C   K E A  L  EM  +G          +ID  CK G +  + 
Sbjct: 322 LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESG 381

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
              + M +IG   ++             G+ D A ++F +      V + +TY  M  N+
Sbjct: 382 KLFDLMVRIGVKPDIITL----------GRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 431

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                L    +L LS   +G  +       +V  L   G
Sbjct: 432 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 470



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 25/255 (9%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    + A+ +F  +++ G  P  VTY  +I  LCK+GR
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 306

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G  P++I Y +++       K++   E+   M  +G       + +
Sbjct: 307 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNS 366

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIV---------------SYNTLINLYCK--- 162
           +I +  K GR+ E+    + MV  GV+ DI+               S N L+  Y     
Sbjct: 367 IIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRNDEAKDLFVAFSSNGLVPNYWTYRL 426

Query: 163 -------EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
                  +G LE    L   ME  G   D      ++  L + G I  A  +L  +++  
Sbjct: 427 MAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKH 486

Query: 216 FDSNLEAYNCIVDRL 230
           F       +  +D L
Sbjct: 487 FSLEASTASLFIDLL 501



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYN 224
           E A  + DE+ ++G   D +++ IL++GLC     + A   L  M   G D   ++ +Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 225 CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +++   K+G +D  ++   S  V    TY+S++  LCKA+ +  A ++L + +KSGV  
Sbjct: 93  TVINGFFKEGDLDKMLDQRISPNV---VTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMP 149

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
                 ++V G   SG  +EA     K+R
Sbjct: 150 DCMTYNSIVHGFCSSGQPKEAIVFLKKMR 178


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 146/288 (50%), Gaps = 12/288 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   + NI++  LCKN  T ++A R+FR +   G  P+  TY  LI GLCK G++  A
Sbjct: 151 IPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQA 210

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +L E+ + G +P+ ++YT+++    ++      +E+L  M   G   + F Y +++  
Sbjct: 211 KELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDG 270

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G   +A + +E MV   +  ++V+Y+TLIN  CKEGK   A  +LD M  QG + D
Sbjct: 271 LCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPD 330

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYM-------NKIGFDSNLEAYNCIVDRLGKDGKID 237
              +  +I GLC A N + A   ++ M       N+  +  +++ +N +V  L  +    
Sbjct: 331 AGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPT 390

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            A  ++ SM  +    +  T+  +V   CK   L  A+++L   +  G
Sbjct: 391 RAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDG 438



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 16/308 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-LRTARW 66
           P   ++  + + L +  +   A+  ++ +++ G  P +V+ NILIK LCK    + +A  
Sbjct: 118 PTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFR 177

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +E+ + G  P++ TY T++    +  K     E+L  M+ KG +     Y ++I    
Sbjct: 178 LFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLC 237

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +   L EA + +E+M+ +G++ ++ +Y++L++  CK G    A  LL+ M ++    +  
Sbjct: 238 QSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMV 297

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ LI+GLCK G  + A   L+ M   G   +   Y  I+  L        A N  + M
Sbjct: 298 TYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEM 357

Query: 247 EV------KDSFTYSSMVHN-----LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +      + S+T+   +HN     LC       A +L LS    G+    S +    D 
Sbjct: 358 ALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGI----SVEIGTFDC 413

Query: 296 LRHSGCRR 303
           L    C+R
Sbjct: 414 LVKCFCKR 421



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 38/295 (12%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A+R+F  ++     P   +Y  +   L +   ++ A    KE+ + G  P  ++   ++
Sbjct: 103 DAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILI 162

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K   +N +                        TV +AF    RL        +M   G Q
Sbjct: 163 KALCKNEE------------------------TVESAF----RL------FREMPNRGCQ 188

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D  +Y TLIN  CK GK+  A  LLDEME++G      ++T LI GLC++ N+  A   
Sbjct: 189 PDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIEL 248

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           LE M   G + N+  Y+ ++D L K G    A+ + E M     + +  TYS++++ LCK
Sbjct: 249 LEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCK 308

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
             +   A ++L      G++        ++ GL  +   +EA     ++ +  IS
Sbjct: 309 EGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGIS 363



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 7/202 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T++ +++GLCK+ ++  A+ +   + +   +P +VTY+ LI GLCK G+
Sbjct: 252 MIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGK 311

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-------KRKGYTF 113
            R A  IL  +   G  P+A  Y  I+        Y+     +  M        R  +TF
Sbjct: 312 HREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTF 371

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
               +  V+           A      M T G+ ++I +++ L+  +CK G L  A  +L
Sbjct: 372 HVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARIL 431

Query: 174 DEMEKQGFECDKYTHTILIDGL 195
           +EM   G   D+    +L+ GL
Sbjct: 432 EEMILDGCIPDEGMWNVLMCGL 453



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 40/275 (14%)

Query: 39  HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98
           +GF  +  T+  +I  L    + R A  +L+ +           + TI +   R  +   
Sbjct: 44  NGFRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLD 103

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            + +   M+          Y TV    V+   +K A  + ++M   G+   +VS N LI 
Sbjct: 104 AIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIK 163

Query: 159 LYCK-EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
             CK E  +E+A+ L  EM  +G + D YT+  LI+GLCK                    
Sbjct: 164 ALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKL------------------- 204

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
                           GKI  A  + + ME K       +Y+S++H LC++  L  A +L
Sbjct: 205 ----------------GKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIEL 248

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           L   + +G+        +++DGL  SG   +A ++
Sbjct: 249 LEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMEL 283



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 7/119 (5%)

Query: 1   MICGDLTPCTATF-------NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 53
           M  G ++P  A++       N+++ GLC N     A +++  ++  G   E+ T++ L+K
Sbjct: 357 MALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVK 416

Query: 54  GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT 112
             CK G L  A  IL+E+   G  P+   +  +M   +  +K +   E+L A  ++ + 
Sbjct: 417 CFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELLVAELKQKFV 475


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 53/344 (15%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTAR 65
           P   ++NI+LNGLC    +  AL +   +   G    P++V+Y+ +I G  K G L    
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL---- 104

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++ D   +PN +TY +I+    + +     +E+L+ M + G   D   Y +++  F
Sbjct: 105 ---DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 161

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD- 184
              G+ KEA  ++++M +DGV+ D+V+YN+L++  CK G+   A  + D M K+G + D 
Sbjct: 162 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 185 ----------------------------------KYTHTILIDGLCKAGNIKGARLHLEY 210
                                              Y  +IL+    K   ++ A L    
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 281

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M + G + N   Y  ++D L K G+++ A+  FE M  +    DS  Y+S++H+LC   +
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
              A +L L  L  G+ +      +++D    S C +E + I+S
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSIID----SHC-KEGRVIES 380



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 144/282 (51%), Gaps = 4/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++  LCK +  D A+ +   + K G +P+ +TYN ++ G C +G+ + A 
Sbjct: 112 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 171

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     +I  +M ++G   D   Y T++  +
Sbjct: 172 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGY 231

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ L+  Y K+ K+E A L+  +M +QG   + 
Sbjct: 232 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 291

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +ID LCK+G ++ A L+ E M   G   +   YN ++  L    K + A  +F  
Sbjct: 292 VTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLE 351

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M  +     +  ++S++ + CK  R+  + KL    ++ GV+
Sbjct: 352 MLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVK 393



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 2/247 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++G C +     A+   + ++  G  P++VTYN L+  LCK GR
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 201

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR I   +   G  P+  TY T+++             +L  M R G   + + +  
Sbjct: 202 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 261

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A+ K  +++EA     +M   G+  + V+Y T+I++ CK G++E A L  ++M  +G
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 321

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D   +  LI  LC      K   L LE +++ G   +   +N I+D   K+G++  +
Sbjct: 322 LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR-GICLSTIFFNSIIDSHCKEGRVIES 380

Query: 240 INVFESM 246
             +F+ M
Sbjct: 381 GKLFDLM 387



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 138/330 (41%), Gaps = 35/330 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    + A+ +F  +++ G  P  VTY  +I  LCK+GR
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 306

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G  P++I Y +++       K++   E+   M  +G       + +
Sbjct: 307 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNS 366

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA-AYLLLDEMEKQ 179
           +I +  K GR+ E+    + MV  GV+ DI++    +    ++  L    Y +   M   
Sbjct: 367 IIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNT 426

Query: 180 GFECDKY-----------------------THTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           G   DK                        T+ I++ GLCK   +    L + + N    
Sbjct: 427 G---DKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCK-NKLTDDALRM-FQNLCLM 481

Query: 217 DSNLEA--YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           D  LEA  +N ++D L K G+ D A ++F +      V + +TY  M  N+     L   
Sbjct: 482 DLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEEL 541

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +L LS   +G  +       +V  L   G
Sbjct: 542 DQLFLSMEDNGCTVDSGMLNFIVRELLQRG 571



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYN 224
           E A  + DE+ ++G   D +++ IL++GLC     + A   L  M   G D   ++ +Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 225 CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +++   K+G +D  ++   S  V    TY+S++  LCKA+ +  A ++L + +KSGV  
Sbjct: 93  TVINGFFKEGDLDKMLDQRISPNV---VTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMP 149

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
                 ++V G   SG  +EA     K+R
Sbjct: 150 DCMTYNSIVHGFCSSGQPKEAIVFLKKMR 178


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 140/278 (50%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C    P   T+NI+L   CK R    A+ +   ++  G  P  VTYN+L+ G+C  G 
Sbjct: 193 MLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGD 252

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ L   G  P+ + Y T++K      ++    E+++ M R+    +   +  
Sbjct: 253 VDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNV 312

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI +  + G L++A   +E+M   G   +IV+YN +IN  C++  ++ A  LL +M+  G
Sbjct: 313 VIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYG 372

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+  L+ GLC A     A   ++ M + G   +   +N ++  L + G +  AI
Sbjct: 373 CKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAI 432

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            VF+ M  K    +S TYS+++  L KA +L  A +L 
Sbjct: 433 EVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELF 470



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 113/240 (47%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N++++G+C     D+AL + R L  HG  P  V YN ++KGLC A R   A  
Sbjct: 234 TPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADE 293

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E+      PN  T+  ++    R    +  +++L  M + G T +   Y  +I    
Sbjct: 294 LVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLC 353

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +   +  A   + +M + G + DIV+YNTL+   C   +   A  L+D M + G   D  
Sbjct: 354 EQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNV 413

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   LI  LC+ G +  A    + M   G   N   Y+ I+  L K  K+D A+ +F  M
Sbjct: 414 TFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM 473



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 141/283 (49%), Gaps = 8/283 (2%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG      A +  + +G C+     +A R+  G+      P   TYN LI  LC+ G++R
Sbjct: 129 CGPAATVVA-YGALTDGYCRAGRLGDARRVVGGMPVQ---PNAYTYNPLIHTLCERGQVR 184

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +L ++   G AP+ +TY  +++   + R Y+  +E++  M+ +G T +   Y  ++
Sbjct: 185 DALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLM 244

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
                 G + +A + +  + + G +   V+YNT++   C   +   A  L+ EM ++   
Sbjct: 245 DGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCP 304

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            ++ T  ++I  LC+ G ++ A   LE M+K G  +N+  YN I++ L +   +D A+ +
Sbjct: 305 PNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGL 364

Query: 243 FESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
              M+      D  TY++++  LC A +   A +L+ +  ++G
Sbjct: 365 LSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNG 407



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 5/273 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P  ATFN+++  LC+      A+++   + KHG    +VTYN +I GLC+   +  A  
Sbjct: 304 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMG 363

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++   G  P+ +TY T++K      ++    E++  M + G   D   + T+I    
Sbjct: 364 LLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLC 423

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G + +A +  +QM   G   + ++Y+T+I+   K  KL+ A  L +EM  +GF  DK 
Sbjct: 424 QKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDK- 482

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + +L + L     I+ A   +  +   G   +   YN I+  L ++GK + AI++   M
Sbjct: 483 IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYM 542

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
                + D  TY  ++  L     L  A +LL+
Sbjct: 543 VSSGCMPDDLTYVILIEGLAYEGYLNEARELLI 575


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 20/316 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P T+T++ +LN LC     + A  +F  +++ G V ++ TY I++   CKAG 
Sbjct: 474 MIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 533

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR    E+ + G  PN +TYT ++    + +K     E+   M  +G   +   Y  
Sbjct: 534 IEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSA 593

Query: 121 VIAAFVKIGRLKEATDYMEQM-----VTD-----------GVQLDIVSYNTLINLYCKEG 164
           +I    K G++++A    E+M     V D             + ++V+Y  L++ +CK  
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           ++E A  LLD M  +G E ++  +  LIDGLCK G +  A+     M++ GF + L  Y+
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++DR  K  + D A  V   M       +   Y+ M+  LCK  +   A KL+    + 
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773

Query: 281 GVRILKSAQKAVVDGL 296
           G +       A++DG 
Sbjct: 774 GCQPNVVTYTAMIDGF 789



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 20/310 (6%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+  +++   K +    A  +F  +   G +P +VTY+ LI G CKAG++  A  
Sbjct: 550 TPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQ 609

Query: 67  IL----------------KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           I                 K+  D+   PN +TY  ++    ++ + +   ++L AM  +G
Sbjct: 610 IFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 669

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              +   Y  +I    K+G+L EA +   +M   G    + +Y++LI+ Y K  + + A 
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +L +M +     +   +T +IDGLCK G    A   ++ M + G   N+  Y  ++D  
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 789

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
           G  GKI+  + + E M  K    +  TY  ++ + CK   L  A  LL    ++      
Sbjct: 790 GMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHT 849

Query: 287 SAQKAVVDGL 296
           +  + V++G 
Sbjct: 850 AGYRKVIEGF 859



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 10/277 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +L G    +      R+   +   G  P    +N L+   C +G    A  +
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRK------YKLGLEILSAMKRKGYTFDGFGYCTV 121
           LK++   GH P  + Y  ++     ++         L  +  S M   G   +     + 
Sbjct: 395 LKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSF 454

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
                  G+ ++A   + +M+  G   D  +Y+ ++N  C   K+E A+LL +EM++ G 
Sbjct: 455 TRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 514

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D YT+TI++D  CKAG I+ AR     M ++G   N+  Y  ++    K  K+ +A  
Sbjct: 515 VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANE 574

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           +FE+M     + +  TYS+++   CKA ++  A ++ 
Sbjct: 575 LFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF 611



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 157/321 (48%), Gaps = 19/321 (5%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++GLCK    D A  +   + +HGF   L TY+ LI    K  R   A  +
Sbjct: 672 PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 731

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++ ++  APN + YT ++    +  K     +++  M+ KG   +   Y  +I  F  
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGM 791

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG+++   + +E+M + GV  + V+Y  LI+  CK G L+ A+ LL+EM++  +      
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 851

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVDRLGKDGKIDHAINVFE 244
           +  +I+G  K   I+     L  +++IG D     L  Y  ++D L K  +++ A+ + E
Sbjct: 852 YRKVIEGFNKEF-IES----LGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLE 906

Query: 245 SME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            +       V  S TY+S++ +LC A ++ +A +L     K GV     +  +++ GL  
Sbjct: 907 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL-- 964

Query: 299 SGCRREAKKIQSKIRMAKISH 319
               R +K  ++ + +  ISH
Sbjct: 965 ---FRNSKISEALLLLDFISH 982



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 145/316 (45%), Gaps = 22/316 (6%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYT------DNALRMFRGLQKHGFVPELVTYNILIKGLC 56
           CG + P    +NI++  +C ++ +      D A + +  +   G V   +  +   + LC
Sbjct: 401 CGHM-PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLC 459

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
            AG+   A  +++E+   G  P+  TY+ ++       K +L   +   MKR G   D +
Sbjct: 460 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY 519

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  ++ +F K G +++A  +  +M   G   ++V+Y  LI+ Y K  K+  A  L + M
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G   +  T++ LIDG CKAG ++ A    E M       +++ Y    D        
Sbjct: 580 LSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYD-------- 631

Query: 237 DHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                  ++ E  +  TY +++   CK+ R+  A KLL +    G    +    A++DGL
Sbjct: 632 -------DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684

Query: 297 RHSGCRREAKKIQSKI 312
              G   EA+++++++
Sbjct: 685 CKVGKLDEAQEVKTEM 700



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 4/242 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +  M++GLCK   TD A ++ + +++ G  P +VTY  +I G    G+
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + T   +L+ +G  G APN +TY  ++  C +N    +   +L  MK+  +     GY  
Sbjct: 795 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRK 854

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K     E+   ++++  D     +  Y  LI+   K  +LE A  LL+E+    
Sbjct: 855 VIEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFS 912

Query: 181 FECDKYTHTI--LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
                Y+ T   LI+ LC A  ++ A      M K G    ++++  ++  L ++ KI  
Sbjct: 913 ATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISE 972

Query: 239 AI 240
           A+
Sbjct: 973 AL 974



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 144/339 (42%), Gaps = 48/339 (14%)

Query: 19  GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
            LCK      AL +   ++   FVP+ V Y  LI GLC+A     A   L  +  +   P
Sbjct: 279 SLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGF--GYCT---------VI 122
           N +TY+T++  C   ++      +L+ M  +G       F+     YCT         ++
Sbjct: 336 NVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLL 395

Query: 123 AAFVKIGRLKEATDY-------------------------MEQMVTDGVQLDIVSYNTLI 157
              VK G +     Y                           +M+  GV L+ ++ ++  
Sbjct: 396 KKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFT 455

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
              C  GK E A+ ++ EM  QGF  D  T++ +++ LC A  ++ A L  E M + G  
Sbjct: 456 RCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLV 515

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
           +++  Y  +VD   K G I+ A   F  M       +  TY++++H   KAK++  A++L
Sbjct: 516 ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANEL 575

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             + L  G         A++DG   +G   +A +I  ++
Sbjct: 576 FETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 124/342 (36%), Gaps = 87/342 (25%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C+N     AL     L+   F P   TYN LI+   KA RL +A  I +E+ 
Sbjct: 203 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS 262

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            +    +  T       CF     K+G   E L+ ++ + +  D   Y  +I+   +   
Sbjct: 263 LANLRMDGFTLR-----CFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASL 317

Query: 131 LKEATDYMEQMVTDGVQLDIVSY-----------------------------------NT 155
            +EA D++ +M       ++V+Y                                   N+
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG--------------------- 194
           L++ YC  G    AY LL +M K G       + ILI                       
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYS 437

Query: 195 --------------------LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                               LC AG  + A   +  M   GF  +   Y+ +++ L    
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 497

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
           K++ A  +FE M+    V D +TY+ MV + CKA  +  A K
Sbjct: 498 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARK 539



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV----TYNILIKGLCKAGR 60
           D  P  + + ++++ L K +  + ALR+   +    F   LV    TYN LI+ LC A +
Sbjct: 877 DTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT--FSATLVDYSSTYNSLIESLCLANK 934

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103
           + TA  +  E+   G  P   ++ +++K  FRN K    L +L
Sbjct: 935 VETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 39/336 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ ++++ LCK+      L+MFR +   G  P ++ Y+ LI GLC+ G+LR A  +  E+
Sbjct: 81  TYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEM 140

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G   N ITY +++    R   +K      S M  +G   D   + T+I    K G++
Sbjct: 141 VSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKV 200

Query: 132 KEA-----------------------------------TDYMEQMVTDGVQLDIVSYNTL 156
           +EA                                       E MV  G+++D++SYNTL
Sbjct: 201 QEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTL 260

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           IN YC  GK E A  L  +M+ +       T+TIL+  L + G I+ A+     M   G 
Sbjct: 261 INGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQ 320

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVF---ESMEVKDSF-TYSSMVHNLCKAKRLPSASK 272
             +L+ Y  ++D L K+G I+ AI+VF   +S++ K S   YS ++  + +A+R  SA +
Sbjct: 321 SPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAME 380

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +       G+         +++GL   G   EA+++
Sbjct: 381 IFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERL 416



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 116/232 (50%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N ++NG C +  T+ A+ +FR +Q     P + TY IL+K L + GR+RTA+ +   +
Sbjct: 256 SYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNM 315

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +P+  TYT ++    +N   +  +++  ++K   Y      Y  +I    +  R 
Sbjct: 316 QICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRW 375

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A +  +++ T G+  +IV+YN +IN  CKEGKL  A  L  +ME+ G E D+ +   +
Sbjct: 376 ESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFI 435

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           I G  +   ++ A   L+ M +  F  N      +V+    D +     N F
Sbjct: 436 IRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSELPNNF 487



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 140/285 (49%), Gaps = 4/285 (1%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           K G+ P LVT + L+KG+C  G++  A  +  ++  SG   + + Y  ++    + R+ +
Sbjct: 2   KSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQAR 61

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             +E+   M  +  + + F Y  VI +  K G   +      +M+  G+  +++ Y++LI
Sbjct: 62  RAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLI 121

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           N  C+ GKL  A  L DEM  QG + +  T+  LI   C+ G  K A      M   G  
Sbjct: 122 NGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGIL 181

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
            ++  +  ++D L K GK+  A  +FE M    E  +  TY+S+++ LC   ++  A +L
Sbjct: 182 PDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRL 241

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
               ++ G++I   +   +++G   SG   EA  +  K++  +++
Sbjct: 242 FEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELT 286



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 143/297 (48%), Gaps = 4/297 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  ++N L K R    A+ + R +          TY ++I  LCK G       + +E+ 
Sbjct: 47  YGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMI 106

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  PN I Y++++    R  K +  + +   M  +G   +   Y ++I A  + G  K
Sbjct: 107 NMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWK 166

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EAT    QMV +G+  D+V++ TLI+   K+GK++ AY + + M KQG   +  T+  L+
Sbjct: 167 EATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLL 226

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-- 250
           +GLC    +  A    E M + G   ++ +YN +++     GK + A+ +F  M+ ++  
Sbjct: 227 NGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELT 286

Query: 251 --SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               TY+ ++  L +  R+ +A +L  +    G          ++DGL  +GC  EA
Sbjct: 287 PSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEA 343



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 134/271 (49%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + ++ G+C      +AL +F  + + GF  +++ Y  LI  L K  + R A  +
Sbjct: 7   PNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVEL 66

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + +     + N  TY  ++    ++     GL++   M   G   +   Y ++I    +
Sbjct: 67  HRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCR 126

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+L+EA +  ++MV+ G++ ++++YN+LI+  C+ G  + A     +M  +G   D  T
Sbjct: 127 VGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVT 186

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            T LID L K G ++ A    E M K G   N+  YN +++ L    ++DHA+ +FE M 
Sbjct: 187 FTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMV 246

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    D  +Y+++++  C + +   A  L 
Sbjct: 247 ERGIKIDVISYNTLINGYCTSGKTEEAMTLF 277



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 139/322 (43%), Gaps = 39/322 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TF  +++ L K      A ++F  + K G  P +VTYN L+ GLC   +
Sbjct: 175 MVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQ 234

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + + + + G   + I+Y T++                             GYCT
Sbjct: 235 MDHAVRLFEVMVERGIKIDVISYNTLIN----------------------------GYCT 266

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                   G+ +EA     +M  + +   I +Y  L+    + G++  A  L + M+  G
Sbjct: 267 S-------GKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICG 319

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+T+L+DGLCK G I+ A      +  I +  ++  Y+ ++  + +  + + A+
Sbjct: 320 QSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAM 379

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F+ +     V +  TY+ M++ LCK  +L  A +L +   +SG    + +   ++ G 
Sbjct: 380 EIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGF 439

Query: 297 RHSGCRREAKKIQSKIRMAKIS 318
                 ++A +   ++R    S
Sbjct: 440 LQENQVQKAMEFLKRMREKNFS 461



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 91/189 (48%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +LTP   T+ I+L  L +N     A  +F  +Q  G  P L TY +L+ GLCK G +  A
Sbjct: 284 ELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEA 343

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + + L    + P+   Y+ ++   F+ R+++  +EI   +   G   +   Y  +I  
Sbjct: 344 IDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMING 403

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G+L EA     QM   G + D +S+N +I  + +E +++ A   L  M ++ F  +
Sbjct: 404 LCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPN 463

Query: 185 KYTHTILID 193
                +L++
Sbjct: 464 DSVTLMLVN 472


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 142/281 (50%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T+N ++N L +N   D+AL +F  + KHG +P   +YN LI+G C  G    A 
Sbjct: 396 VVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAM 455

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +      P  +TY  I+K    +    + + +L  MK  G   D + Y  +I+ F
Sbjct: 456 SMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGF 515

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            KI +++ A+    +M+  G+  + V+Y  LI+ YCK+ KL+ A  +L+ M++ G   + 
Sbjct: 516 CKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNV 575

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ +LI GL K  N  GA    + M +     ++  Y+ +++ L  +G I  A+ +F  
Sbjct: 576 QTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNK 635

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M     + +  TYSS++  L +  R+  A ++     K G+
Sbjct: 636 MVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGL 676



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 132/272 (48%), Gaps = 7/272 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +L  L K   T   +  +  + + G  P L+ YN +I  LCK G +R A  I+ ++
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG  P+  TYT+++    RNR      EI + M  +G   +   Y T+I      GR+
Sbjct: 255 FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRV 314

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA D++ +M   GV   + ++   I   C  G++E A+ +  +M+K+G + + YT+T L
Sbjct: 315 NEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSL 374

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I G  +   +     H   M++ G   N   YN +++ L ++ +ID A+ VF  M     
Sbjct: 375 ISGQ-RVSRMAIGLFH--RMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGC 431

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           + ++ +Y+ ++   C       A  +L + LK
Sbjct: 432 LPNTSSYNELIRGYCTIGDTEKAMSMLTNMLK 463



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 118/246 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G  TP   T+NI++ G C +  TD A+R+   ++ +G  P+  +Y  LI G CK  +
Sbjct: 461 MLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISK 520

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ D G  PN +TYT ++    ++ K      +L  MKR G   +   Y  
Sbjct: 521 MELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNV 580

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K      A +  + M+ + +  D+V+Y+T+IN  C  G +  A  + ++M K G
Sbjct: 581 LIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHG 640

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T++ LI  L + G ++ A      + K G   +   Y  +++     GK+D A 
Sbjct: 641 CLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAF 700

Query: 241 NVFESM 246
           +    M
Sbjct: 701 DFLGEM 706



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 135/329 (41%), Gaps = 36/329 (10%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL------ 61
           P  AT++ ++NGLC +   + AL     + +HG +P + T+   I  LC  GR+      
Sbjct: 296 PNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKI 355

Query: 62  --------------------------RTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
                                     R A  +   +   G  PN +TY  +M     N +
Sbjct: 356 FIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENME 415

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
               L + + M + G   +   Y  +I  +  IG  ++A   +  M+       +V+YN 
Sbjct: 416 IDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNI 475

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +I  YC  G  + A  +L+ M+  G + D++++T LI G CK   ++ A      M   G
Sbjct: 476 IIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRG 535

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
              N   Y  ++    KD K+D A  + E M+      +  TY+ ++H L K      A 
Sbjct: 536 LCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 595

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           +L    L+  +         V++GL ++G
Sbjct: 596 ELCKVMLEEKISPDVVTYSTVINGLCNNG 624



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 142/349 (40%), Gaps = 52/349 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N ++N LCK+    +A  +   + K G  P+  TY  +I G C+   L +A 
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAF 283

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   + + G  PNA TY+T++     + +    L+ +S M R G       +   I A 
Sbjct: 284 EIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVAL 343

Query: 126 VKIGRLKE--------------------------------ATDYMEQMVTDGVQLDIVSY 153
             +GR+++                                A     +M  DGV  + V+Y
Sbjct: 344 CDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTY 403

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           N L+N+  +  ++++A ++ + M K G   +  ++  LI G C  G+ + A   L  M K
Sbjct: 404 NALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLK 463

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPS 269
                 L  YN I+      G  D AI V E M+      D ++Y+ ++   CK  ++  
Sbjct: 464 GRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMEL 523

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDG----------------LRHSGCR 302
           AS +    +  G+   +    A++ G                ++ SGCR
Sbjct: 524 ASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCR 572



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 131/285 (45%), Gaps = 26/285 (9%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK+   D A RM   +++ G  P + TYN+LI GL K      A 
Sbjct: 536 LCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 595

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K + +   +P+ +TY+T++     N    L LE+ + M + G   +   Y ++I A 
Sbjct: 596 ELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQAL 655

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GR++EA +   ++   G+  D V+Y  +I +    GK++ A+  L EM   G +   
Sbjct: 656 GQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTL 715

Query: 186 YTHTILIDGL----------CKAGNIKGARLHLEYMNK------------IGFDSNLEAY 223
            T+ +LI GL                  +    + +NK            + F+ + + Y
Sbjct: 716 QTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLY 775

Query: 224 NCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKA 264
           + ++ RL + G+   A N++ SM    +  +  TY   + +L +A
Sbjct: 776 DALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRA 820



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 6/235 (2%)

Query: 71  LGDSGHAPNAITYTTI--MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           L +S   P A+    I  +K C    +    L  L    ++G     F Y T++    K+
Sbjct: 147 LLESRDRPAAVGRARIHMIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKL 206

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
                  D   Q++ +G+Q +++ YN++IN  CK+G +  A  +++++ K G + D +T+
Sbjct: 207 NMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTY 266

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           T +I G C+  ++  A      M++ G + N   Y+ +++ L   G+++ A++    M  
Sbjct: 267 TSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTR 326

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
              +    T+++ +  LC   R+  A K+ +   K G +       +++ G R S
Sbjct: 327 HGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVS 381



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           + ++  A   LD   ++G +   +T+T L+  L K             + + G   NL  
Sbjct: 171 KAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLI 230

Query: 223 YNCIVDRLGKDGKIDHA---IN-VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN +++ L KDG +  A   IN VF+S    D+FTY+SM+   C+ + L SA ++     
Sbjct: 231 YNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMD 290

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREA 305
           + G     +    +++GL +SG   EA
Sbjct: 291 EEGCEPNAATYSTLINGLCNSGRVNEA 317



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 57/144 (39%)

Query: 48  YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
           Y+ L+  L ++GR   A  + + +      PN  TY   +    R  K  L +++   M 
Sbjct: 775 YDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMS 834

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
            +       GY  +I    ++ R KEA    E+M++  +  D + +  LIN     G  +
Sbjct: 835 DQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILINGLLGAGYKD 894

Query: 168 AAYLLLDEMEKQGFECDKYTHTIL 191
                L  ME        +  TIL
Sbjct: 895 LCMEFLHIMETNRRNPSSHARTIL 918


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 136/277 (49%), Gaps = 4/277 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++N +C     D AL +   L  HG  P+ VTY  ++K LC + R +    +
Sbjct: 319 PDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEEL 378

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+  +  AP+ +T+ TI+    +       +E++  M   G   D   Y +++     
Sbjct: 379 LAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCD 438

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+ +A + + ++ + G + D ++Y T++   C   + E A  L+ EM       D+ T
Sbjct: 439 VGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVT 498

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              ++  LC+ G +  A   +E M++ G   ++  YNCI+D L  +  ID A+ +   ++
Sbjct: 499 FNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQ 558

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
                 D  T+++++  LC   R   A +L+ + ++S
Sbjct: 559 SCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRS 595



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 136/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +  P   TFN ++  LC+    D A+ +   + +HG V ++VTY+ ++ GLC  GR
Sbjct: 382 MTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGR 441

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L  L   G  P+ I YTT++K      +++   E+++ M       D   + T
Sbjct: 442 VDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNT 501

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+A+  + G +  A   +EQM  +G   DIV+YN +I+  C E  ++ A  LL +++  G
Sbjct: 502 VVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCG 561

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T   L+ GLC     + A   +  M +     +   +N ++  L + G +  AI
Sbjct: 562 CKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAI 621

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
              + M     V +S TYS +V  L KA +  +A +LL
Sbjct: 622 ETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELL 659



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 132/272 (48%), Gaps = 4/272 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T++I+L+  CK      A+ +   ++  G  P++VTYN+LI  +C  G +  A  
Sbjct: 283 SPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALN 342

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL  L   G  P+A+TYT ++K    + ++K   E+L+ M       D   + T++ +  
Sbjct: 343 ILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLC 402

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G +  A + ++ M   G   DIV+Y+++++  C  G+++ A  LL  ++  G + D  
Sbjct: 403 QQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTI 462

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +T ++ GLC     + A   +  M       +   +N +V  L + G +D AI V E M
Sbjct: 463 AYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQM 522

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
                  D  TY+ ++  LC    +  A +LL
Sbjct: 523 SENGCSPDIVTYNCIIDGLCNESCIDDAMELL 554



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 144/315 (45%), Gaps = 16/315 (5%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           C  + PC    NI++  LC +    +A R+F  L     V   VTYN ++ G C+AGR+ 
Sbjct: 184 CPPVVPC----NILIKRLCSDGRVSDAERVFAALGPSATV---VTYNTMVNGYCRAGRIE 236

Query: 63  TARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
            AR ++  +      P+  T+  +++  C R R     L +   M  +G +     Y  +
Sbjct: 237 DARRLINGM---PFPPDTFTFNPLIRALCVRGR-IPDALAVFDDMLHRGCSPSVVTYSIL 292

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           + A  K    ++A   +++M   G + DIV+YN LIN  C EG ++ A  +L  +   G 
Sbjct: 293 LDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGC 352

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           + D  T+T ++  LC +   K     L  M       +   +N IV  L + G +D AI 
Sbjct: 353 KPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIE 412

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           V + M     V D  TYSS++  LC   R+  A +LL      G +    A   V+ GL 
Sbjct: 413 VVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLC 472

Query: 298 HSGCRREAKKIQSKI 312
            +     A+++ +++
Sbjct: 473 STEQWERAEELMAEM 487



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 142/312 (45%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P T TFN ++  LC      +AL +F  +   G  P +VTY+IL+   CK    R A 
Sbjct: 247 FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAM 306

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+   G  P+ +TY  ++            L ILS +   G   D   Y  V+ + 
Sbjct: 307 ALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSL 366

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               R KE  + + +M ++    D V++NT++   C++G ++ A  ++D M + G   D 
Sbjct: 367 CGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADI 426

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ ++DGLC  G +  A   L  +   G   +  AY  ++  L    + + A  +   
Sbjct: 427 VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAE 486

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D  T++++V +LC+   +  A +++    ++G          ++DGL +  C
Sbjct: 487 MLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESC 546

Query: 302 RREAKKIQSKIR 313
             +A ++ S ++
Sbjct: 547 IDDAMELLSDLQ 558



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 145/305 (47%), Gaps = 7/305 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N M+NG C+    ++A R+  G+    F P+  T+N LI+ LC  GR+  A  +  ++
Sbjct: 221 TYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALAVFDDM 277

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +P+ +TY+ ++    +   Y+  + +L  M+ KG   D   Y  +I A    G +
Sbjct: 278 LHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDV 337

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + +  + + G + D V+Y  ++   C   + +    LL EM       D+ T   +
Sbjct: 338 DEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTI 397

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           +  LC+ G +  A   +++M++ G  +++  Y+ I+D L   G++D A+ +   ++    
Sbjct: 398 VTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGC 457

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+  Y++++  LC  ++   A +L+   L S     +     VV  L   G    A +
Sbjct: 458 KPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIR 517

Query: 308 IQSKI 312
           +  ++
Sbjct: 518 VVEQM 522



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 130/280 (46%), Gaps = 6/280 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +++GLC     D+A+ +   LQ  G  P++VT+N L+KGLC   R   A  
Sbjct: 528 SPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQ 587

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++  +  S   P+ +T+ T++    +       +E L  M   G   +   Y  V+ A +
Sbjct: 588 LMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALL 647

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G+ + A + +  M T+G   D+++YNT+I+   K GK+E A  LL  M   G   D  
Sbjct: 648 KAGKAQAALELLSGM-TNGTP-DLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTT 705

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  L  G+C+      A   L  +   G   +   YN ++    +D + D AI+ F  M
Sbjct: 706 TYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHM 765

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                + D  TY  ++  L     L  A +LL S    GV
Sbjct: 766 VSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P T T+  +  G+C+   TD A+RM R +Q  G  P+   YN ++ G C+  R
Sbjct: 695 MVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRR 754

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
              A      +  SG  P+  TY  +++
Sbjct: 755 TDLAIDCFAHMVSSGCMPDESTYVILLE 782



 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P T  +N +L G C++R TD A+  F  +   G +P+  TY IL++ L   G L  A+
Sbjct: 735 LSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAK 794

Query: 66  WILKEL 71
            +L  L
Sbjct: 795 RLLASL 800


>gi|414590862|tpg|DAA41433.1| TPA: hypothetical protein ZEAMMB73_769800 [Zea mays]
          Length = 1295

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 147/295 (49%), Gaps = 6/295 (2%)

Query: 8    PCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            PC+   FN +++G C     D A+ +F G++K G+VP++ +Y+IL+ GLCK G L     
Sbjct: 934  PCSNYCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYD 993

Query: 67   ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            +L+E+  +G  PN ++Y++++    +  +  L L+I   ++  G+  D   Y  ++    
Sbjct: 994  MLEEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCC 1053

Query: 127  KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            +   LK  +D    M+   +  D+ +Y +LI   C+   L+ A  + + M + G   +  
Sbjct: 1054 QHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIV 1113

Query: 187  THTILIDGLCKAGNIKGARLHLEYMNK-IGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T TIL+D   K G +  A L L+ M++ +G   NL  Y  +++ L K  K     NVF  
Sbjct: 1114 TCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFAD 1173

Query: 246  M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            M     V D   YS ++    KA +L  A +L    L  GV+       ++++GL
Sbjct: 1174 MIKRGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGL 1228



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 1/205 (0%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI  ++ P    +  ++  LC++R   +AL +F  + ++G  P +VT  IL+    K G 
Sbjct: 1068 MIHHNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGL 1127

Query: 61   LRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            +  A   L  +  S G  PN   Y  ++    +  KY     + + M ++GY  D   Y 
Sbjct: 1128 VGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKRGYVPDVVLYS 1187

Query: 120  TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
             +I  FVK  +L+EA     +M+ +GV+ +I +Y++LIN  C + +L  A  L+ +M  +
Sbjct: 1188 IIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEAMGLIRDMIGE 1247

Query: 180  GFECDKYTHTILIDGLCKAGNIKGA 204
                D   +T +I   C+  N+K A
Sbjct: 1248 DLLLDNVLYTSIIACYCRRLNMKAA 1272



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 132/298 (44%), Gaps = 6/298 (2%)

Query: 14   NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR--LRTARWILKEL 71
            N +L  L +      A  +F  ++  G  P + +Y+IL+       R  L  A  +L E+
Sbjct: 834  NFLLKCLVEGNQIMYARSLFDDMKSCGPSPNVCSYSILMSMYTHGERSCLEEAFELLCEM 893

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              +G  PNA TY T +    R+R+     + L  + + G     + +  VI  F   G++
Sbjct: 894  ESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQV 953

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             +A +    M   G   D+ SY+ L++  CK+G L   Y +L+EM + G   ++ +++ L
Sbjct: 954  DKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSL 1013

Query: 192  IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV----DRLGKDGKIDHAINVFESME 247
            + GLCK G +  A    + +   GF+ +   Y+ I+      L      D   ++     
Sbjct: 1014 LHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNI 1073

Query: 248  VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              D + Y+S+++ LC+ + L  A  +    L++G+         +VD     G   EA
Sbjct: 1074 APDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEA 1131



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            + P    + +M+NGLCK         +F  + K G+VP++V Y+I+I+G  KA +L+ A 
Sbjct: 1144 IVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKRGYVPDVVLYSIIIEGFVKALKLQEAL 1203

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +  ++ D G  PN  TY++++     + +    + ++  M  +    D   Y ++IA +
Sbjct: 1204 RLYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEAMGLIRDMIGEDLLLDNVLYTSIIACY 1263

Query: 126  VKIGRLKEATDYMEQMVTDG 145
             +   +K A   ME    DG
Sbjct: 1264 CRRLNMKAA---MEMAQRDG 1280



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK--LEAAYLLLDEMEK 178
            ++   V+  ++  A    + M + G   ++ SY+ L+++Y    +  LE A+ LL EME 
Sbjct: 836  LLKCLVEGNQIMYARSLFDDMKSCGPSPNVCSYSILMSMYTHGERSCLEEAFELLCEMES 895

Query: 179  QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
             G   +  T+   + GLC++  +  A   L+ +++ G   +   +N ++     +G++D 
Sbjct: 896  NGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQVDK 955

Query: 239  AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
            AI VF  M+    V D  +YS +V  LCK   L     +L    ++G+   + +  +++ 
Sbjct: 956  AIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLH 1015

Query: 295  GLRHSGCRREAKKIQSKIRMAKISH 319
            GL  +G    A KI   ++     H
Sbjct: 1016 GLCKTGQVALALKIFKNLQDHGFEH 1040



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI     P    ++I++ G  K      ALR++  +   G  P + TY+ LI GLC   R
Sbjct: 1174 MIKRGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCNDDR 1233

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
            L  A  +++++       + + YT+I+ C  R    K  +E+
Sbjct: 1234 LPEAMGLIRDMIGEDLLLDNVLYTSIIACYCRRLNMKAAMEM 1275


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 137/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++NG C N     A+     L   G+  +  +Y  LI GLCK G+ R A  +
Sbjct: 123 PNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQL 182

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ +    PN ITY+T++    ++R     L + S +  +G   D   Y ++I     
Sbjct: 183 LQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCS 242

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+ +EAT  +  MV   +  D  ++N L++  CKEG++  A  +   M K+G + D  T
Sbjct: 243 VGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVT 302

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++G C + N+  AR     M K G + ++  YN +++   K   +D A+ +F+ + 
Sbjct: 303 YNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIR 362

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLL 274
            K+      TY+S++  LCK  R+    +L+
Sbjct: 363 CKNLVPNLATYNSLIDGLCKLGRMSCVQELV 393



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 134/277 (48%), Gaps = 3/277 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++GLCK+R   +ALR+F  +   G + ++V YN LI G C  G+ R A  +
Sbjct: 193 PNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRL 252

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +      P+  T+  ++    +  +      + + M ++G   D   Y  ++  F  
Sbjct: 253 LTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCL 312

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + EA +   +MV  G++ D+++YN LIN YCK   ++ A +L  E+  +    +  T
Sbjct: 313 SNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLAT 372

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LIDGLCK G +   +  ++ M   G   ++  YN  +D   K    + AI++F  + 
Sbjct: 373 YNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIV 432

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                D + Y  +V N CK ++L  A + L   L  G
Sbjct: 433 QGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHG 469



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++  ++NGLCKN  T +AL++ + +++    P L+TY+ +I GLCK   +  A  +   +
Sbjct: 162 SYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLV 221

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G   + + Y +++  C    +++    +L+ M R     D + +  ++ A  K GR+
Sbjct: 222 TSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRI 281

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA      M+  G + DIV+YN L+  +C    +  A  L + M K+G E D   + +L
Sbjct: 282 VEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVL 341

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           I+G CK   +  A +  + +       NL  YN ++D L K G++     + + M    +
Sbjct: 342 INGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQ 401

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             D  TY+  +   CK+K    A  L 
Sbjct: 402 SPDIVTYNIFLDAFCKSKPYEKAISLF 428



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 136/286 (47%), Gaps = 5/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G++ P   TFNI+++ LCK      A  +F  + K G  P++VTYN L++G C +  
Sbjct: 256 MVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNN 315

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +   +   G  P+ + Y  ++    +       + +   ++ K    +   Y +
Sbjct: 316 VSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNS 375

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+GR+    + +++M   G   DIV+YN  ++ +CK    E A  L  ++  QG
Sbjct: 376 LIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQI-VQG 434

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D Y + ++++  CK   +K A   L+++   G   N+  Y  +++ L KD   D A+
Sbjct: 435 IWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAM 494

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   M+      D+ T+ +++  L +      A KL L  ++ G+
Sbjct: 495 TLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGL 540



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 4/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ +L  + +  +   A+ +F  L   G  P + T  ILI   C    L  A  
Sbjct: 52  PPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFS 111

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +   G  PN +T+ T++     N      +     +  KGY  D F Y ++I    
Sbjct: 112 LLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLC 171

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G+ ++A   +++M  D V+ ++++Y+T+I+  CK+  +  A  L   +  +G   D  
Sbjct: 172 KNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVV 231

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            +  LI G C  G  + A   L  M +   + +   +N +VD L K+G+I  A  VF  M
Sbjct: 232 AYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVM 291

Query: 247 ----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
               E  D  TY++++   C +  +  A +L    +K G+ 
Sbjct: 292 MKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLE 332



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D  L   R L+KH   P +  ++ L+  + + G   TA  +  +L   G  P+  T T +
Sbjct: 38  DTLLSFNRMLRKHP-PPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTIL 96

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           + C            +L  + + G+  +   + T+I  F   G + +A  +   ++  G 
Sbjct: 97  INCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGY 156

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
            LD  SY +LIN  CK G+   A  LL +ME+     +  T++ +IDGLCK   I  A  
Sbjct: 157 PLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALR 216

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNL 261
               +   G   ++ AYN ++      G+   A  +  +M V+     D +T++ +V  L
Sbjct: 217 LFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLL-TMMVRGNINPDDYTFNILVDAL 275

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           CK  R+  A  +    +K G +       A+++G   S    EA+++ +++
Sbjct: 276 CKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRM 326



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+NI L+  CK++  + A+ +FR + + G  P+   Y+++++  CK  +L+ A  
Sbjct: 402 SPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEE 460

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L+ L   G  PN  TYT ++    ++  +   + +LS M       D   + T+I A  
Sbjct: 461 ALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQ 520

Query: 127 KIGRLKEATDYMEQMVTDGVQLD 149
           +     +A     +M+  G+  D
Sbjct: 521 ERNETDKAEKLRLEMIERGLVND 543


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 159/327 (48%), Gaps = 15/327 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP T TFNI++ G C N   D     F+ + +    P++VTYN L+ GLC+AG+++ A 
Sbjct: 303 VTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAH 362

Query: 66  WILKEL--GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            ++K +       +PN +TYTT+++     +     L +L+ M  +G   +   Y T+I 
Sbjct: 363 NVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQ 422

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
              +  +L +  + +E MV DG  + D  + NTLI  +C  GKLE A+ + ++M +   +
Sbjct: 423 GLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQ 482

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLE-------YMNKIGFDSNLEAYNCIVDRLGKDGK 235
            D  T+++L+  LC+ G+ + A    +        ++ +G    + AYN + + L  +GK
Sbjct: 483 PDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGK 542

Query: 236 IDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
              A  VF  +     +D  +Y +++   C+     +   LL+  L+            +
Sbjct: 543 TKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLM 602

Query: 293 VDGLRHSGCRREAKKIQSKIRMAKISH 319
           +DGL   G    A K  S  +M K SH
Sbjct: 603 IDGLLKKGDPVLAHK--SLEKMLKSSH 627



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 143/326 (43%), Gaps = 31/326 (9%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG 59
           M+   L P   T+N ++ GLC+ +  D    +  G+    GF+P+  T N LIK  C  G
Sbjct: 405 MVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMG 464

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  + +++ +    P++ TY+ +++   +   ++   E    +  K       G  
Sbjct: 465 KLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCK 524

Query: 120 TVIAAFVKI-------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
            ++AA+  +       G+ K+A     Q++  G Q D  SY TLI  +C+EG  EA + L
Sbjct: 525 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDL 583

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           L  M ++ F  D  T+ ++IDGL K G+   A   LE M K         ++ I+  L +
Sbjct: 584 LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVE 643

Query: 233 DGK-----ID---HAINVFESMEVKDS--------------FTYSSMVHNLCKAKRLPSA 270
             +     ID   H + +     ++D                    +V  LC++++L  A
Sbjct: 644 KERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEELVSFLCQSRKLLEA 703

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGL 296
            K+LL  L+    +       V+ GL
Sbjct: 704 QKMLLFSLEKRQSVDIDMCSTVISGL 729



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 9/268 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L+P   T+  ++ G C  +    AL +   +   G  P  +TYN LI+GLC+A +L   
Sbjct: 374 NLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKI 433

Query: 65  RWILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           + IL+ + GD G  P+  T  T++K      K +    +   M       D   Y  ++ 
Sbjct: 434 KEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVR 493

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLD-------IVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +  + G  + A ++ +++    + L        + +YN +    C  GK + A  +  ++
Sbjct: 494 SLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQL 553

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            K+G + D  ++  LI G C+ G  +     L  M +  F  + E Y  ++D L K G  
Sbjct: 554 MKRGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDP 612

Query: 237 DHAINVFESMEVKDSFTYSSMVHNLCKA 264
             A    E M        +++ H++  A
Sbjct: 613 VLAHKSLEKMLKSSHLPTTAIFHSILAA 640



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 127/319 (39%), Gaps = 60/319 (18%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--------------------- 42
            +L P  +   + L  L   R    AL  FR ++  GF                      
Sbjct: 180 AELAPSLSKTTV-LQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNA 238

Query: 43  ------------------------------PELVTYNILIKGLCKAGRLRTARWILKELG 72
                                         P +VT+N L+  + K GR   A+ +  E+ 
Sbjct: 239 ARNFVFSIEKKSGGAESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 298

Query: 73  DS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           D+ G  P+  T+  +++    N     G      M R     D   Y T++    + G++
Sbjct: 299 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 358

Query: 132 KEATDYMEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           K A + ++ MV     L  ++V+Y TLI  YC +  +  A  LL EM  +G + +K T+ 
Sbjct: 359 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 418

Query: 190 ILIDGLCKAGNIKGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
            LI GLC+A  +   +  LE M    GF  +    N ++      GK++ A +VFE M  
Sbjct: 419 TLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSE 478

Query: 248 ---VKDSFTYSSMVHNLCK 263
                DS TYS +V +LC+
Sbjct: 479 LRVQPDSATYSVLVRSLCQ 497



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 115/284 (40%), Gaps = 30/284 (10%)

Query: 43  PELVTYNILIKGLCKAGR-------LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           P  +T N  +K   K  R       + T  W  +          +++ TT+++     R 
Sbjct: 141 PIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRT 200

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM----------------E 139
               L     ++ KG+T +   Y  +I    +   L  A +++                +
Sbjct: 201 PAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAESIKVFK 260

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKYTHTILIDGLCKA 198
            M   GV   +V++N+L+++  K G+   A  L DEM +  G   D YT  ILI G C  
Sbjct: 261 TMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMN 320

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------F 252
             +       + M++   D ++  YN +VD L + GK+  A NV + M  K         
Sbjct: 321 SMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVV 380

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           TY++++   C  + +  A  LL   +  G++  K     ++ GL
Sbjct: 381 TYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGL 424


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 149/309 (48%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++ GLC       AL +F  +   GF P +VTY  LI GLCK  ++  A  I
Sbjct: 113 PDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNI 172

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+   G +PN +TY +++    +  ++K    +++ M       D F   TV+ A  K
Sbjct: 173 FSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 232

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + EA D ++ M+  GV+ ++V+YN L++ +C   +++ A  + D M  +    +  +
Sbjct: 233 EGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVIS 292

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +  LI+G CK  ++  A    E M++     N   YN ++  L   G++  AI++F  M 
Sbjct: 293 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 352

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
              ++ D  TY ++   LCK + L  A  LL +   S           ++DG+  +G   
Sbjct: 353 ARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELE 412

Query: 304 EAKKIQSKI 312
           +A+ + S +
Sbjct: 413 DARDLFSNL 421



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 146/321 (45%), Gaps = 41/321 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+  ++NGLCK+R    A  +F  +   G  P +VTYN LI GLCK   
Sbjct: 141 MIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCE 200

Query: 61  LRTARWILKELGDS-----------------------------------GHAPNAITYTT 85
            +    ++ E+ DS                                   G  PN +TY  
Sbjct: 201 WKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNA 260

Query: 86  IMKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           +M   C RN +  + +++   M  K    +   Y T+I  + KI  + +A    E+M   
Sbjct: 261 LMDGHCLRN-EVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ 319

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
            +  + V+YNTLI+  C  G+L+ A  L  EM  +G   D  T+  L D LCK  ++  A
Sbjct: 320 ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKA 379

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
              L+ +    +D +++ Y  I+D + + G+++ A ++F ++  K    + +TY+ M+H 
Sbjct: 380 MALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHG 439

Query: 261 LCKAKRLPSASKLLLSCLKSG 281
           LCK   L  ASKL     K+G
Sbjct: 440 LCKQGLLAEASKLFSEMNKNG 460



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T  I++N LC     D A      + K G  P+  T+  LI+GLC  G++  A 
Sbjct: 76  IPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEAL 135

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TY T++    ++R+      I S M  KG + +   Y ++I   
Sbjct: 136 HLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGL 195

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+   K  T  M +MV   +  D+ + NT+++  CKEG +  A+ ++D M  +G E + 
Sbjct: 196 CKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNV 255

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+DG C    +  A    + M      +N+ +YN +++   K   +D A+ +FE 
Sbjct: 256 VTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEE 315

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           M       ++ TY++++H LC   RL  A  L    +  G
Sbjct: 316 MSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG 355



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 145/302 (48%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  FN +L  + K ++    L + R +   G  P++ T  I+I  LC   R+  A   
Sbjct: 43  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 102

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   GH P+A T+TT+++      K    L +   M  +G+  +   Y T+I    K
Sbjct: 103 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++ EA +   +M+T G+  +IV+YN+LI+  CK  + +    L++EM       D +T
Sbjct: 163 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 222

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              ++D LCK G +  A   ++ M   G + N+  YN ++D      ++D A+ VF++M 
Sbjct: 223 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 282

Query: 248 VKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            KD      +Y+++++  CK + +  A  L     +  +         ++ GL H G  +
Sbjct: 283 HKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQ 342

Query: 304 EA 305
           +A
Sbjct: 343 DA 344



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 17/278 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  F  +L  + K ++    L +   +   G  P++ T NILI   C   RL  A  +
Sbjct: 579 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 638

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L +L   G  P+ +TY T+M               L  M  KG + D F Y ++I A   
Sbjct: 639 LAKLLKLGFQPDVVTYGTLMNG-------------LCKMITKGISPDIFTYNSLIHALCN 685

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +   K  T  + +MV   +  ++V ++T+++  CKEG +  A+ ++D M K+G E D  T
Sbjct: 686 LCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVT 745

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+DG C    +  A    + M   G   N+ +YN +++   +  ++D A+ + E M 
Sbjct: 746 YTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMS 805

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++    D+ TY++++H LC   RL  A  L    + SG
Sbjct: 806 LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 843



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 1/240 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D      ++N ++NG CK +  D A+ +F  + +    P  VTYN LI GLC  GR
Sbjct: 281 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  +  E+   G  P+ +TY T+     +NR     + +L A++   +  D   Y T
Sbjct: 341 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 400

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G L++A D    + + G+Q ++ +YN +I+  CK+G L  A  L  EM K G
Sbjct: 401 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 460

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+ ++  G  +          LE M   GF  ++     +V  L  DG +D ++
Sbjct: 461 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG-LDQSV 519



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 120/260 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+ +++ LCK      A  +   + K G  P++VTY  L+ G C    
Sbjct: 699 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 758

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G  PN  +Y  ++    + ++    + +L  M  +G   D   Y T
Sbjct: 759 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 818

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I     +GRL+ A     +MV  G   D+V+Y  L++  CK   L  A +LL  +E   
Sbjct: 819 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 878

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   + I IDG+C+AG ++ AR     ++  G   ++  YN ++  L K G +D A 
Sbjct: 879 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEAN 938

Query: 241 NVFESMEVKDSFTYSSMVHN 260
            +F  M+  D ++ S+   N
Sbjct: 939 KLFRKMDENDIWSNSTSSRN 958



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 143/333 (42%), Gaps = 26/333 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA------- 58
           + P   T NI++N  C  R    A  +   L K GF P++VTY  L+ GLCK        
Sbjct: 612 IPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISP 671

Query: 59  ----------GRLRTARW-----ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103
                            W     +L E+ +S   PN + ++T++    +     +  +++
Sbjct: 672 DIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVV 731

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
             M ++G   D   Y  ++        + EA    + MV  G   ++ SYN LIN YC+ 
Sbjct: 732 DMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQI 791

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
            +++ A  LL++M  QG   D  T+  LI GLC  G ++ A      M   G   +L  Y
Sbjct: 792 QRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTY 851

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
             ++D L K+  +  A+ + +++E      D   Y+  +  +C+A  L +A  L  +   
Sbjct: 852 RILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSS 911

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            G++        ++ GL   G   EA K+  K+
Sbjct: 912 KGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKM 944



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 10/177 (5%)

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA     +M+        V +N L+    K         L  +M+  G   D YT  I
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 85

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           +I+ LC    +  A   L  + K+G   +   +  ++  L  +GKI  A+++F+ M + +
Sbjct: 86  VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM-IGE 144

Query: 251 SF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            F     TY ++++ LCK +++  A  +    +  G+    S      + L H  C+
Sbjct: 145 GFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGI----SPNIVTYNSLIHGLCK 197


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G   P   T+N +++G CK     +A R+ +     GF P+  TY  LI G CK G 
Sbjct: 286 MVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGD 345

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K+    G  P+ + Y T++K   +       L++++ M   G   + + Y  
Sbjct: 346 PDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNL 405

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    K+G + +A+  ++  +  G   DI +YNTLI+ YCK+ KL++A  +++ M  QG
Sbjct: 406 VINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQG 465

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  L++GLCKAG  +      + M + G   N+  YN IVD L K  K++ A+
Sbjct: 466 MTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAV 525

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           ++   M+ K    D  ++ ++    CK   +  A +L 
Sbjct: 526 DLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLF 563



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 153/328 (46%), Gaps = 41/328 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N+++NGLCK     +A  +       G  P++ TYN LI G CK  +L +A  +
Sbjct: 398 PNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEM 457

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G  P+ ITY T++    +  K +  +EI  AM+ KG T +   Y  ++ +  K
Sbjct: 458 VNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCK 517

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-------- 179
             ++ EA D + +M + G++ D+VS+ TL   +CK G ++ AY L   MEKQ        
Sbjct: 518 AKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTA 577

Query: 180 ----------------------------GFECDKYTHTILIDGLCKAGNI-KGARLHLEY 210
                                       G + D YT+ ++IDG CK GNI +G +  LE 
Sbjct: 578 TYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLEN 637

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA-KRLPS 269
           M K  F  +L  +  +++ L    K+  A+ +   M  K        V+ + +A K++ +
Sbjct: 638 MEK-RFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKG--IVPETVNTIFEADKKVVA 694

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           A K+L+  L     I     + + DG+R
Sbjct: 695 APKILVEDLLKKGHIAYYTYELLYDGIR 722



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 136/280 (48%), Gaps = 13/280 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---------GFVPELVTYNILIKGLCKA 58
           P   TFNI + GLC+    D A+R  R ++           GF P+ +TYN +I G CK 
Sbjct: 249 PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK 308

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           G ++ A  +LK+    G  P+  TY +++    ++      + +      KG       Y
Sbjct: 309 GMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLY 368

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            T+I    + G +  A   M +M  +G   +I +YN +IN  CK G +  A  L+D+   
Sbjct: 369 NTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIA 428

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G   D +T+  LIDG CK   +  A   +  M   G   ++  YN +++ L K GK + 
Sbjct: 429 KGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEE 488

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            + +F++ME K    +  TY+ +V +LCKAK++  A  LL
Sbjct: 489 VMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLL 528



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 131/277 (47%), Gaps = 7/277 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N ++ GL +      AL++   + ++G +P + TYN++I GLCK G +  A 
Sbjct: 361 LRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDAS 420

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ +    G  P+  TY T++    +  K     E+++ M  +G T D   Y T++   
Sbjct: 421 HLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGL 480

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+ +E  +  + M   G   +I++YN +++  CK  K+  A  LL EM+ +G + D 
Sbjct: 481 CKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDV 540

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYNCIVDRLGKDGKIDHAINVF 243
            +   L  G CK G+I GA      M K  +D       YN IV    +   ++ A+ +F
Sbjct: 541 VSFGTLFTGFCKIGDIDGAYQLFRRMEK-QYDVCHTTATYNIIVSAFSEQLNMNMAMKLF 599

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLS 276
             M+      D++TY  ++   CK   +    K LL 
Sbjct: 600 SVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLE 636



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 152/322 (47%), Gaps = 19/322 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL---- 61
           L P    FN +++ LCK      + R+   + K G  P L T+NI ++GLC+ G L    
Sbjct: 212 LCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAV 271

Query: 62  RTARWI-----LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           R +R +     L+++ + G  P+ +TY +I+    +    +    +L     KG+  D F
Sbjct: 272 RNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEF 331

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            YC++I  F K G    A    +  +  G++  IV YNTLI    ++G +  A  L++EM
Sbjct: 332 TYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEM 391

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            + G   + +T+ ++I+GLCK G +  A   ++     G   ++  YN ++D   K  K+
Sbjct: 392 AENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKL 451

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           D A  +   M       D  TY+++++ LCKA +     ++  +  + G          +
Sbjct: 452 DSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNII 511

Query: 293 VDGLRHSGCRREAKKIQSKIRM 314
           VD L    C+  AKK+   + +
Sbjct: 512 VDSL----CK--AKKVNEAVDL 527



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 148/336 (44%), Gaps = 48/336 (14%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   + N ++N L +  Y + A +++  ++  G   ++ TY I IK  CK  R   A  +
Sbjct: 109 PSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRL 168

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-------------------R 108
           L+ + + G   NA+ Y T++   + + ++    E+   M                    +
Sbjct: 169 LRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCK 228

Query: 109 KGYTFDG---------FGYCTVIAAF----------------VKIGRLKEATDYMEQMVT 143
           KG  F+           G C  +  F                V+  R+ EA +Y+ +MV 
Sbjct: 229 KGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVN 288

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            G + D ++YN++I+ YCK+G ++ A  +L +   +GF+ D++T+  LI+G CK G+   
Sbjct: 289 GGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDR 348

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVH 259
           A    +     G   ++  YN ++  L + G I  A+ +   M     + + +TY+ +++
Sbjct: 349 AMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVIN 408

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            LCK   +  AS L+   +  G          ++DG
Sbjct: 409 GLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDG 444



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 13/285 (4%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+  F  +  +   P + ++N ++  L + G    A  +   + D G   +  TYT  +K
Sbjct: 95  AVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIK 154

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              +  +    L +L  M   G   +   YCTV+A     G    A +  ++M+   +  
Sbjct: 155 SFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCP 214

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG----NIKGA 204
           D+V++N L+++ CK+G +  +  LL ++ K+G   + +T  I + GLC+ G     ++ +
Sbjct: 215 DVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNS 274

Query: 205 RL--HLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYS 255
           R+    EY+ K+   GF+ +   YN I+D   K G +  A  V +    K    D FTY 
Sbjct: 275 RVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYC 334

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           S+++  CK      A  +    L  G+R        ++ GL   G
Sbjct: 335 SLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQG 379



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 7/216 (3%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFDGFGYCTVIAAFVKIGR 130
           + G    A TY  I++    + +++   ++LS M+        +G  Y   +  + + G+
Sbjct: 33  EDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEG-AYIEAMKNYGRKGK 91

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA D  E+M        + S+N ++N+  + G    A+ +   M  +G + D YT+TI
Sbjct: 92  VQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTI 151

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
            I   CK      A   L  M ++G DSN  AY  +V  L   G+ DHA  +F+ M  + 
Sbjct: 152 RIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARC 211

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              D   ++ +VH LCK   +  + +LL   LK GV
Sbjct: 212 LCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGV 247



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 51/106 (48%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+   TAT+NI+++   +    + A+++F  ++  G  P+  TY ++I G CK G +   
Sbjct: 571 DVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQG 630

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
              L E  +    P+  T+  ++ C     K    + I+  M +KG
Sbjct: 631 YKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKG 676


>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
          Length = 616

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 140/265 (52%), Gaps = 13/265 (4%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L+ L K+R+   A  + R L++  F P++VTYN L  G C+      A  +L+ + 
Sbjct: 168 FNSLLDALSKSRHAGKAASLVRALEQR-FTPDVVTYNTLADGWCRVKDTSRALDVLRLMV 226

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----FDGFGYCTVIAAFVK 127
           +SG AP   TY  I+K  FR  + +   +    MK++G        D   Y T++     
Sbjct: 227 ESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGV 286

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L++A    ++M  +G    + +YN LI + CK+G +E A  + D M  +G+  +  T
Sbjct: 287 AGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVT 346

Query: 188 HTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +T+LI GLC AG I +G +L LE M   G +  ++ YN ++  L ++G+++  +++FE M
Sbjct: 347 YTVLIRGLCHAGKIDRGLKL-LERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKM 405

Query: 247 E-----VKDSFTYSSMVHNLCKAKR 266
                 + +  TY+ ++  +   KR
Sbjct: 406 SKGEECLPNQDTYNIIISAMFMRKR 430



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 8/202 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-----VPELVTYNILIKGL 55
           M+   + P   T+NI+L G  +     +A   F  ++K G       P++V+Y  ++ GL
Sbjct: 225 MVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGL 284

Query: 56  CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
             AG+L  AR +  E+   G AP+  TY  +++   +    +  + +   M  KGY  + 
Sbjct: 285 GVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNV 344

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  +I      G++      +E+M   G +  + +YN LI    +EG++E    L ++
Sbjct: 345 VTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEK 404

Query: 176 MEKQGFEC--DKYTHTILIDGL 195
           M K G EC  ++ T+ I+I  +
Sbjct: 405 MSK-GEECLPNQDTYNIIISAM 425



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 4/175 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  AT+N ++  +CK    ++A+ +F G+   G+VP +VTY +LI+GLC AG++     +
Sbjct: 307 PSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKL 366

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG-YCTVIAAFV 126
           L+ + + G  P   TY  +++  F   + + GL++   M +          Y  +I+A  
Sbjct: 367 LERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMF 426

Query: 127 KIGRLKE---ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
              R ++   A   +++MV  G       +N ++N     G  E +  LL   EK
Sbjct: 427 MRKRAEDMVLAARMVDEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKLLRMQEK 481



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 6/211 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  M++GL      + A ++F  + K G  P + TYN LI+ +CK G +  A  +
Sbjct: 272 PDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTV 331

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +   G+ PN +TYT +++      K   GL++L  MK  G       Y  +I    +
Sbjct: 332 FDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFE 391

Query: 128 IGRLKEATDYMEQMVTDGVQ--LDIVSYNTLINLYCKEGKLEAAYL---LLDEMEKQGFE 182
            G +++  D  E+M + G +   +  +YN +I+      + E   L   ++DEM  +G+ 
Sbjct: 392 EGEMEKGLDLFEKM-SKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVDEMVDRGYL 450

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
             ++    +++GL   GN + +R  L    K
Sbjct: 451 PRRFMFNRVLNGLMLTGNQELSRKLLRMQEK 481



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 18/172 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+ +++ GLC     D  L++   ++  G  P + TYN+LI+ L + G 
Sbjct: 335 MLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGE 394

Query: 61  LRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYK---LGLEILSAMKRKGYTFDGF 116
           +     + +++       PN  TY  I+   F  ++ +   L   ++  M  +GY    F
Sbjct: 395 MEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVDEMVDRGYLPRRF 454

Query: 117 GYCTVIAAFVKIG---------RLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
            +  V+   +  G         R++E     E+  T     +I S + L+ L
Sbjct: 455 MFNRVLNGLMLTGNQELSRKLLRMQEKYRLFERAPT-----EIFSLSLLVQL 501


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 141/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 186

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 246

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L  A+ L+DEM  +G + DK+T+T LI
Sbjct: 247 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLI 306

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  I+  L ++G+ +D    + E + V   
Sbjct: 307 DGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLK 366

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    ++G
Sbjct: 367 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNG 399



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 116/242 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 155 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 214

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 215 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 274

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L +A   +++M   G++ D  +Y TLI+  CKEG L+AA+     M ++    D 
Sbjct: 275 CKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDD 334

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T +I GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 335 VAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKE 394

Query: 246 ME 247
           M+
Sbjct: 395 MQ 396



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 185 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 244

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++      P+ ITY T++    +         ++  M  KG   D F Y T
Sbjct: 245 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTT 304

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  +I+  C+EG+   A  +L EM   G
Sbjct: 305 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVG 364

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 365 LKPDTGTYTMIINEFCKKGDVWKGSKL-LKEMQRNGHVPSVXTYNVLMN 412



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 100/194 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +     +P+L+TYN LI GLCK G 
Sbjct: 220 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++ E+   G  P+  TYTT++  C +        E    M ++    D   Y  
Sbjct: 280 LNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTA 339

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+G +     LL EM++ G
Sbjct: 340 IISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNG 399

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 400 HVPSVXTYNVLMNG 413



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K RY       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 95  VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 154

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 155 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 214

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 215 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 274

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++  A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 275 CKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRL-D 333

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 334 DVAYTAIISGLCQEGRPVDAEKMLREMLSVGLK 366


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 136/294 (46%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +LN  CK      AL +   L++ G  P ++TYN LI G C+ G L  AR
Sbjct: 374 LLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEAR 433

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ + G  P+  TYT +M    + R   +  E    M  KG   D F Y T I A 
Sbjct: 434 RLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAE 493

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           + +     A    E M+  G+  D V+YN +I+  CK G L+ A  L  +M   G + D 
Sbjct: 494 LTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDC 553

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI   C+ G ++ AR  L  M   G   ++  Y  +V    + G +  A   F  
Sbjct: 554 ITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRK 613

Query: 246 M-EV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M +V    +  TY+ ++H LC   R P A +     L+ G+   K     ++DG
Sbjct: 614 MLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDG 667



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 141/304 (46%), Gaps = 11/304 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN++++ L +  + +NA+++   ++         TYN LI  L + G +R A  +  E+
Sbjct: 276 TFNVVISFLAREGHLENAVKLVDSMRLSKKASSF-TYNPLITALLERGFVRKAEALQMEM 334

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P  +TY  I+    +  + +      + M+  G   D   Y +++  + K G L
Sbjct: 335 ENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNL 394

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           KEA   +  +   G+   +++YNTLI+ YC+ G L  A  L +EM +QG   D  T+TIL
Sbjct: 395 KEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTIL 454

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           ++G  K  N+  AR   + M   G   +  AYN    R+  +  +      F+  EV   
Sbjct: 455 MNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNT---RICAELTLSSTPMAFQLREVMML 511

Query: 249 ----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                D+ TY+ ++  LCK   L  A +L    +  G++        ++      G  RE
Sbjct: 512 KGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLRE 571

Query: 305 AKKI 308
           A+K+
Sbjct: 572 ARKL 575



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +N  +        T  A ++   +   G  P+ VTYN++I GLCK G 
Sbjct: 474 MLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGN 533

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A+ +  ++   G  P+ ITYT ++         +   ++L+ M   G       Y  
Sbjct: 534 LKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTI 593

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G L  A  +  +M+  G++ + ++YN LI+  C  G+   A+    EM ++G
Sbjct: 594 LVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERG 653

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +KYT+T+LIDG C+ GN   A RL+ E M++ G   +   +N +      +G + HA
Sbjct: 654 LAPNKYTYTLLIDGNCREGNWADAIRLYFE-MHQNGIPPDYCTHNALFKGF-DEGHMYHA 711

Query: 240 INVFESM 246
           I   E++
Sbjct: 712 IEYMENI 718



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 140/311 (45%), Gaps = 7/311 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTAR 65
           P   T+N +L+   K    D A  + + ++  G  F    VT+N++I  L + G L  A 
Sbjct: 235 PTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAV 294

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +  S  A ++ TY  ++         +    +   M+ +G       Y  +I   
Sbjct: 295 KLVDSMRLSKKA-SSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGL 353

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K  + + A     +M   G+  D+++YN+L+N YCK G L+ A  LL ++ + G     
Sbjct: 354 LKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTV 413

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDG C+ G++  AR   E M + G   ++  Y  +++   K   +  A   F+ 
Sbjct: 414 LTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDE 473

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K    D F Y++ +         P A +L    +  G+         ++DGL  +G 
Sbjct: 474 MLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGN 533

Query: 302 RREAKKIQSKI 312
            ++AK++++K+
Sbjct: 534 LKDAKRLKTKM 544



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 42/214 (19%)

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECDKYTHTILIDGLCK 197
           +M+   V+  IV+YNTL++ + KEG+ + A +LL EME Q  GF  +  T  ++I  L +
Sbjct: 227 EMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAR 286

Query: 198 AGNIKGA-----------------------------------RLHLEYMNKIGFDSNLEA 222
            G+++ A                                    L +E  N+ G    +  
Sbjct: 287 EGHLENAVKLVDSMRLSKKASSFTYNPLITALLERGFVRKAEALQMEMENE-GIMPTVVT 345

Query: 223 YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN I+  L K  + + A   F  M     + D  TY+S+++  CKA  L  A  LL    
Sbjct: 346 YNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLR 405

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           ++G+         ++DG    G   EA++++ ++
Sbjct: 406 RAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEM 439


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 136/280 (48%), Gaps = 4/280 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++ LCK+R  + AL +F  ++  G  P + TYN LI+GLC   R R A  +
Sbjct: 43  PDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 102

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+      PN +T++ ++    +         +L  M   G   +   Y +++  +  
Sbjct: 103 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + EA    + M+T G + D+ SYN LIN YCK  ++  A  L +EM  QG   D  +
Sbjct: 163 QAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVS 222

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LIDGLC+ G ++ A    + M   G   +L  Y+ ++D   K G +  A  +F +M+
Sbjct: 223 YNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQ 282

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                 +   Y+ ++  +CK++ L  A KL       G++
Sbjct: 283 STYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQ 322



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 153/313 (48%), Gaps = 39/313 (12%)

Query: 39  HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98
            G+ P++ TY  +I GLCK G    A  + K++G++G  P+ +TY+TI+    ++R+   
Sbjct: 4   RGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 63

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            L+I S MK KG + + F Y ++I       R +EA+  + +M++  +  +IV+++ LIN
Sbjct: 64  ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 123

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFE-----------------------------------C 183
           ++CKEG +  A  +L  M + G E                                    
Sbjct: 124 IFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKP 183

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +++ ILI+G CKA  I  A+     M   G   ++ +YN ++D L + G++  A ++F
Sbjct: 184 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLF 243

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           ++M     + D  TYS ++   CK   L  A +L  +   + ++        ++D +  S
Sbjct: 244 KNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKS 303

Query: 300 GCRREAKKIQSKI 312
              +EA+K+ S++
Sbjct: 304 RNLKEARKLFSEL 316



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 120/250 (48%), Gaps = 12/250 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++ GLC       A  M   +     +P +VT+++LI   CK G +  AR
Sbjct: 76  ISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEAR 135

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA------MKRKGYTFDGFGYC 119
            +LK + + G  PN +TY+++M        Y L  E+  A      M  KG   D F Y 
Sbjct: 136 GVLKTMTEMGVEPNVVTYSSLMN------GYSLQAEVFEARKLFDVMITKGCKPDVFSYN 189

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I  + K  R+ EA     +M+  G+  DIVSYNTLI+  C+ G+L  A+ L   M   
Sbjct: 190 ILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN 249

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T++IL+DG CK G +  A      M       N+  YN ++D + K   +  A
Sbjct: 250 GNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEA 309

Query: 240 INVFESMEVK 249
             +F  + V+
Sbjct: 310 RKLFSELFVQ 319



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 39/239 (16%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M  +GY  D   Y T+I    KIG    A    ++M   G Q D+V+Y+T+I+  CK+ +
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGL------------------------------ 195
           +  A  +   M+ +G   + +T+  LI GL                              
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 196 -----CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
                CK GN+  AR  L+ M ++G + N+  Y+ +++      ++  A  +F+ M  K 
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              D F+Y+ +++  CKAKR+  A +L    +  G+     +   ++DGL   G  REA
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREA 239


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 145/323 (44%), Gaps = 9/323 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P  A  + +++GL K    D+A  +   + + GFVP L  YN LI  LCK G L  A 
Sbjct: 326 FSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAE 385

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +      PN ITY+ ++    R+ +  + +     M + G     + Y ++I   
Sbjct: 386 LLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQ 445

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L  A     +M   GV+    ++ +LI+ YCK+ +++ A+ L ++M   G   + 
Sbjct: 446 CKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNV 505

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT T LI GLC    +  A    + + +         YN +++   +DGKID A  + E 
Sbjct: 506 YTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLED 565

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V D++TY  ++  LC   R+  A   +    K  V++ +    A++ G    G 
Sbjct: 566 MHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGR 625

Query: 302 RREA-----KKIQSKIRMAKISH 319
             EA     + IQ  I M  + H
Sbjct: 626 LMEALSASCEMIQRGINMDLVCH 648



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 142/302 (47%), Gaps = 4/302 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  +++G CK+     A +++  +  +G  P + T+  LI GLC   ++  A  +
Sbjct: 468 PTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASEL 527

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             EL +    P  +TY  +++   R+ K     E+L  M +KG   D + Y  +I+    
Sbjct: 528 FDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCS 587

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ +A D+++ +    V+L+ + Y+ L++ YC+EG+L  A     EM ++G   D   
Sbjct: 588 TGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVC 647

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           H +LIDG  K  + K     L+ M+  G   +   Y  ++D   K+G    A   ++ M 
Sbjct: 648 HAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMV 707

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            ++ F    TY+++++ LCKA  +  A  L      + V          +D L   G  +
Sbjct: 708 TEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMK 767

Query: 304 EA 305
           EA
Sbjct: 768 EA 769



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 133/280 (47%), Gaps = 3/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N+++ G C++   D A  +   + + G VP+  TY  LI GLC  GR+  A+
Sbjct: 536 IKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAK 595

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + +L       N + Y+ ++    +  +    L     M ++G   D   +  +I   
Sbjct: 596 DFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGA 655

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K    K   D ++ M   G++ D V Y ++I+ Y KEG  + A+   D M  +    + 
Sbjct: 656 LKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNV 715

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T L++GLCKAG +  A L  + M       N   Y C +D L K+G +  AI +  +
Sbjct: 716 VTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHA 775

Query: 246 M---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M    + ++ T++ ++   CK  R   A+K+L    ++G+
Sbjct: 776 MLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGI 815



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 158/321 (49%), Gaps = 9/321 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T + ++  +C+ +    A    R ++ +GF   +VTYN+LI GLCK  R+  A  +
Sbjct: 223 PDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEV 282

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + LG  G A + +TY T++    R ++++ G++++  M   G++        ++    K
Sbjct: 283 KRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRK 342

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ +A + + ++   G   ++  YN LIN  CK G L+ A LL   M       +  T
Sbjct: 343 QGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGIT 402

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILID  C++G +  A  + + M + G    + AYN +++   K G +  A ++F  M 
Sbjct: 403 YSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMT 462

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K     + T++S++   CK  ++  A KL    + +G+        A++ GL  +    
Sbjct: 463 NKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMA 522

Query: 304 EAKK-----IQSKIRMAKISH 319
           EA +     ++ KI+  ++++
Sbjct: 523 EASELFDELVERKIKPTEVTY 543



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 127/237 (53%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   T++I+++  C++   D A+  F  + + G    +  YN LI G CK G L  A
Sbjct: 395 NLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAA 454

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  E+ + G  P A T+T+++    ++ + +   ++ + M   G T + + +  +I+ 
Sbjct: 455 ESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISG 514

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
                ++ EA++  +++V   ++   V+YN LI  YC++GK++ A+ LL++M ++G   D
Sbjct: 515 LCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPD 574

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            YT+  LI GLC  G +  A+  ++ ++K     N   Y+ ++    ++G++  A++
Sbjct: 575 TYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALS 631



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 143/300 (47%), Gaps = 6/300 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +L P   T + +LNGL K R       +F      G  P+  T + +++ +C+   
Sbjct: 181 MFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKD 240

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+  ++ +  +G   + +TY  ++    +  +    +E+  ++  KG   D   YCT
Sbjct: 241 FLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCT 300

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F ++ + +     M++MV  G      + + L++   K+GK++ AY L+ ++ + G
Sbjct: 301 LVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFG 360

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  + + +  LI+ LCK G++  A L    M+ +    N   Y+ ++D   + G++D AI
Sbjct: 361 FVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAI 420

Query: 241 NVFESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + F+ M ++D      + Y+S+++  CK   L +A  L +     GV    +   +++ G
Sbjct: 421 SYFDRM-IQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISG 479



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 138/290 (47%), Gaps = 4/290 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN+++     +    +A+ + + +  +  +PE+ T + L+ GL K  +  T   +  
Sbjct: 155 TLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFD 214

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E  ++G  P+  T + +++     + +    E +  M+  G+      Y  +I    K  
Sbjct: 215 ESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGD 274

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+ EA +    +   G+  D+V+Y TL+  +C+  + EA   L+DEM + GF   +   +
Sbjct: 275 RVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVS 334

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
            L+DGL K G I  A   +  + + GF  NL  YN +++ L K G +D A  ++ +M + 
Sbjct: 335 GLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLM 394

Query: 249 ---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
               +  TYS ++ + C++ RL  A       ++ G+     A  ++++G
Sbjct: 395 NLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLING 444



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 1/199 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  M++   K      A   +  +      P +VTY  L+ GLCKAG +  A 
Sbjct: 676 LRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAG 735

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K +  +   PN+ITY   +    +    K  + +  AM  KG   +   +  +I  F
Sbjct: 736 LLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAM-LKGLLANTVTHNIIIRGF 794

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+GR  EAT  + +M  +G+  D V+Y+TLI  YC+ G + A+  L D M  +G E D 
Sbjct: 795 CKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDL 854

Query: 186 YTHTILIDGLCKAGNIKGA 204
             + +LI G C  G +  A
Sbjct: 855 VAYNLLIYGCCVNGELDKA 873



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+  ++NGLCK    D A  +F+ +Q     P  +TY   +  L K G 
Sbjct: 706 MVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGN 765

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +   +   G   N +T+  I++   +  ++    ++LS M   G   D   Y T
Sbjct: 766 MKEAIGLHHAML-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYST 824

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + + G +  +    + M+  G++ D+V+YN LI   C  G+L+ A+ L D+M ++G
Sbjct: 825 LIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRG 884

Query: 181 FECD 184
              D
Sbjct: 885 IIPD 888


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 158/316 (50%), Gaps = 14/316 (4%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    FN +L  L K+++    L + + ++  G  P LV  NILI   C+ G + +A  
Sbjct: 59  TPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFS 118

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNR---------KYKLGLEILSAMKRKGYTFDGF 116
           +L ++   G+ PN IT  T++K  C   +         K K  +++ + M  +    D +
Sbjct: 119 VLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVY 178

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            +  ++  F K GR+KEA + +  M+  G++  +V+YN+L++ Y    ++  A  + + M
Sbjct: 179 TFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTM 238

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            + G   D  +++ILI+G CK   +  A   L+ M+      N+  Y+ ++D L K GKI
Sbjct: 239 AQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKI 298

Query: 237 DHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
            +A+ + + M    +  +  TYSS++  LCK  ++ +A  LL      G++        +
Sbjct: 299 SYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTIL 358

Query: 293 VDGLRHSGCRREAKKI 308
           + GL  SG   +A+K+
Sbjct: 359 IKGLCQSGKLEDARKV 374



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 138/281 (49%), Gaps = 14/281 (4%)

Query: 8   PCTATFNIMLNGLCKN-RYTD---------NALRMFRGLQKHGFVPELVTYNILIKGLCK 57
           P T T N ++ GLC N +  D         +A+ +F  +      P++ T+ IL+ G CK
Sbjct: 130 PNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCK 189

Query: 58  AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
            GR++ A+ +L  +   G  P  +TY ++M   F  ++      I + M + G + D   
Sbjct: 190 EGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQS 249

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y  +I  F KI  + EA + +++M    +  ++V+Y++LI+  CK GK+  A  L+DEM 
Sbjct: 250 YSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMH 309

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            +G   +  T++ ++D LCK   +  A   L  M   G   N+  Y  ++  L + GK++
Sbjct: 310 DRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLE 369

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            A  VFE + VK    + +TY+ M+   C       A  LL
Sbjct: 370 DARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLL 410



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 153/322 (47%), Gaps = 14/322 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P     NI++N  C+  +  +A  +   + K G+ P  +T N LIKGLC  G++    
Sbjct: 93  IKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKH 152

Query: 66  WILKELGDS----------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
            I+ +L D+             P+  T+T ++    +  + K    +L+ M  +G     
Sbjct: 153 CIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGV 212

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y +++  +  + ++ +A      M   GV  DI SY+ LIN +CK   ++ A  LL E
Sbjct: 213 VTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKE 272

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M  +    +  T++ LIDGLCK+G I  A   ++ M+  G   N+  Y+ I+D L K+ +
Sbjct: 273 MHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQ 332

Query: 236 IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           +D+AI +   M+ +    + +TY+ ++  LC++ +L  A K+    L  G  +       
Sbjct: 333 VDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTV 392

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           ++ G    G   EA  + SK+ 
Sbjct: 393 MIQGFCDKGLFDEALTLLSKME 414



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 120/229 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   +++I++NG CK +  D A+ + + +     +P +VTY+ LI GLCK+G++  A 
Sbjct: 243 VSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYAL 302

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ D G  PN +TY++I+    +N +    + +L+ MK +G   + + Y  +I   
Sbjct: 303 KLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGL 362

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+L++A    E ++  G  L++ +Y  +I  +C +G  + A  LL +ME  G   + 
Sbjct: 363 CQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNA 422

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            T+ I+I  L K    + A   L  M +  FD  +   N ++  +   G
Sbjct: 423 KTYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLIASIWVTG 471



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 137/278 (49%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TF I+++G CK      A  +   +   G  P +VTYN L+ G     +
Sbjct: 168 MILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQ 227

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ I   +   G +P+  +Y+ ++    + +     +E+L  M  K    +   Y +
Sbjct: 228 VNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSS 287

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++  A   +++M   G   +IV+Y+++++  CK  +++ A  LL +M+ QG
Sbjct: 288 LIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQG 347

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + + YT+TILI GLC++G ++ AR   E +   G + N+  Y  ++      G  D A+
Sbjct: 348 IQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEAL 407

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +   ME    + ++ TY  ++ +L K      A KLL
Sbjct: 408 TLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLL 445



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 49/271 (18%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N I Y +       N      + + + + ++  T     +  ++ + VK           
Sbjct: 26  NFIPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLS 85

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE---------------- 182
           ++M   G++ ++V+ N LIN +C+ G + +A+ +L ++ K G++                
Sbjct: 86  QKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLN 145

Query: 183 -----------------------------CDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
                                         D YT TIL+DG CK G +K A+  L  M  
Sbjct: 146 GKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMI 205

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPS 269
            G    +  YN ++D      +++ A ++F +M       D  +YS +++  CK K +  
Sbjct: 206 QGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDE 265

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           A +LL       +        +++DGL  SG
Sbjct: 266 AMELLKEMHHKQIIPNVVTYSSLIDGLCKSG 296


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 139/278 (50%), Gaps = 4/278 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P    +  +++G CK    + A  +F  + K G V    TY +LI GL K G  +   
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGF 253

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++ + G  PN  TY  +M    ++ + K   ++   M+ +G + +   Y T+I   
Sbjct: 254 EMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGL 313

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  +L EA   ++QM +DG+  ++++YNTLI+ +C  GKL  A  L  +++ +G     
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ IL+ G C+ G+  GA   ++ M + G   +   Y  ++D   +   ++ AI +  S
Sbjct: 374 VTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS 433

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           ME    V D  TYS ++H  C   ++  AS+L  S ++
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVE 471



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 156/321 (48%), Gaps = 7/321 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P +  FN +L  +  +  + N    F    K   V ++ ++ ILIKG C+AG 
Sbjct: 120 MVDNGFVPGSNCFNYLLTFVVGSS-SFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGE 178

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +  +L EL + G +PN + YTT++  C +  + +   ++   M + G   +   Y  
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G  K+  +  E+M  DGV  ++ +YN ++N  CK+G+ + A+ + DEM ++G
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERG 298

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             C+  T+  LI GLC+   +  A   ++ M   G + NL  YN ++D     GK+  A+
Sbjct: 299 VSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++   ++ +       TY+ +V   C+      A+K++    + G++  K     ++D  
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTF 418

Query: 297 RHSGCRREAKKIQSKIRMAKI 317
             S    +A  IQ ++ M ++
Sbjct: 419 ARSDNMEKA--IQLRLSMEEL 437



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 148/311 (47%), Gaps = 41/311 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ +++NGL KN        M+  +Q+ G  P L TYN ++  LCK GR + A  +  E+
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G + N +TY T++    R  K     +++  MK  G   +   Y T+I  F  +G+L
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A      + + G+   +V+YN L++ +C++G    A  ++ EME++G +  K T+TIL
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414

Query: 192 IDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           ID   ++ N++ A +L L  M ++G   ++  Y+ ++      G+++ A  +F+SM  K+
Sbjct: 415 IDTFARSDNMEKAIQLRLS-MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473

Query: 251 --------------------SF-------------------TYSSMVHNLCKAKRLPSAS 271
                               S+                   +Y  M+  LCK ++   A 
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533

Query: 272 KLLLSCLKSGV 282
           +L+   + SG+
Sbjct: 534 RLVEKMIDSGI 544



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 108/214 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++G C       AL + R L+  G  P LVTYNIL+ G C+ G    A 
Sbjct: 334 INPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAA 393

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++KE+ + G  P+ +TYT ++    R+   +  +++  +M+  G   D   Y  +I  F
Sbjct: 394 KMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGF 453

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G++ EA+   + MV    + + V YNT+I  YCKEG    A  LL EME++    + 
Sbjct: 454 CIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNV 513

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            ++  +I+ LCK    K A   +E M   G D +
Sbjct: 514 ASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPS 547



 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 46/88 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P    +N M+ G CK   +  AL++ + +++    P + +Y  +I+ LCK  +
Sbjct: 469 MVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERK 528

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
            + A  +++++ DSG  P+    + I +
Sbjct: 529 SKEAERLVEKMIDSGIDPSTSILSLISR 556


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 154/316 (48%), Gaps = 7/316 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++NGLC+      A+ +   + + G  P  +TY  ++ G+CK G   +A  +
Sbjct: 180 PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNL 239

Query: 68  LKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L+++ +  H  PN + Y TI+   +++ ++     +   M+ K    D   Y  +I  F 
Sbjct: 240 LRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFC 299

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             GR  +A   +++M+   +  D+V+++ LIN + KEGK   A  L DEM  +       
Sbjct: 300 ISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTV 359

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           T++ +IDG CK   +  A  H+ Y+    G   ++  +N ++    +  ++D  I +   
Sbjct: 360 TYSSMIDGFCKQNRLDAAE-HMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHE 418

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V ++ TY++++H  C+   L +A  LL   + SGV         ++DGL  +G 
Sbjct: 419 MTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGK 478

Query: 302 RREAKKIQSKIRMAKI 317
            ++A ++   ++ +K+
Sbjct: 479 LKDALEMFKAMQKSKM 494



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 142/321 (44%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++GL K+    +A  +F  +Q+    P++VTYN +I G C +GR   A 
Sbjct: 249 IIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAE 308

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +    P+ +T++ ++    +  K+    E+   M  +        Y ++I  F
Sbjct: 309 QLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGF 368

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A        T G   DI+++NTLI  YC+  +++    LL EM + G   + 
Sbjct: 369 CKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANT 428

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI G C+ G++  A+  L+ M   G   N+   N ++D L  +GK+  A+ +F++
Sbjct: 429 ITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKA 488

Query: 246 ME--------------------------------------------------VKDSFTYS 255
           M+                                                  V D+ TYS
Sbjct: 489 MQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYS 548

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           SM+  LCK  RL  A+++  S
Sbjct: 549 SMIDGLCKQSRLDEATQMFDS 569



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 15/292 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TF+ ++N   K      A  ++  +     +P  VTY+ +I G CK  RL  A 
Sbjct: 319 INPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAE 378

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +       G +P+ IT+ T++    R ++   G+++L  M   G   +   Y T+I  F
Sbjct: 379 HMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGF 438

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------ 179
            ++G L  A D +++M++ GV  ++V+ NTL++  C  GKL+ A  +   M+K       
Sbjct: 439 CQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDA 498

Query: 180 -----GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                G E D  T+ ILI GL   G    A    E M   G   +   Y+ ++D L K  
Sbjct: 499 SRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 558

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++D A  +F+SM  K    D  T+++++   CKA  +    +L     + G+
Sbjct: 559 RLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGI 610



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 15/297 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T++ M++G CK    D A  MF      G  P+++T+N LI G C+A R
Sbjct: 349 MLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKR 408

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+ ++G   N ITYTT++    +        ++L  M   G   +     T
Sbjct: 409 VDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNT 468

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             +GV+ D+ +YN LI     EGK   A
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEA 528

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T++ +IDGLCK   +  A    + M    F  ++  +N ++  
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITG 588

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             K G +D  + +F  M     V D+ TY ++++   K   +  A  +    + SGV
Sbjct: 589 YCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGV 645



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 10/273 (3%)

Query: 8   PCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           PC A +F I++   C       AL  F  + K GF P +VT+N L+ GLC   R+  A  
Sbjct: 113 PCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALD 172

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  ++      PN +T+TT+M    R  +    + +L  M   G   +   Y T++    
Sbjct: 173 LFHQMC----KPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMC 228

Query: 127 KIGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           K+G    A + + +M     +  ++V YNT+I+   K+G+   A+ L  EM+++    D 
Sbjct: 229 KMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDI 288

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I+G C +G    A   L+ M +   + ++  ++ +++   K+GK   A  +++ 
Sbjct: 289 VTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDE 348

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     +  + TYSSM+   CK  RL +A  + 
Sbjct: 349 MLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMF 381



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 11/220 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-----------HGFVPELVTYN 49
           MI   + P   T N +L+GLC N    +AL MF+ +QK           +G  P++ TYN
Sbjct: 454 MISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYN 513

Query: 50  ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           ILI GL   G+   A  + +E+   G  P+ ITY++++    +  +     ++  +M  K
Sbjct: 514 ILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 573

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
            ++ D   + T+I  + K G + +  +   +M   G+  D ++Y TLI  + K   ++ A
Sbjct: 574 SFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGA 633

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
             +  EM   G   D  T   ++ GL     ++ A   LE
Sbjct: 634 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLE 673



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 2/173 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI++ GL        A  ++  +   G VP+ +TY+ +I GLCK  RL  A 
Sbjct: 505 VEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 564

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +G    +P+ +T+ T++    +      GLE+   M ++G   D   Y T+I  F
Sbjct: 565 QMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGF 624

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSY-NTLINLYCKEGKLEAAYLLLDEME 177
            K+  +  A D  ++M++ GV  D ++  N L  L+ KE +LE A  +L++++
Sbjct: 625 RKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKE-ELERAVAMLEDLQ 676



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 36/271 (13%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P+ I +  +M    R  +  + + +   M+      + + +  ++  F    +L  A   
Sbjct: 79  PSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALST 138

Query: 138 MEQMVTDGVQLDIVSYNTLI-------------------------------NLYCKEGKL 166
             ++   G    +V++NTL+                               N  C+EG++
Sbjct: 139 FGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLCREGRV 198

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNC 225
             A  LLD M + G + ++ T+  ++DG+CK G+   A   L  M ++     N+  YN 
Sbjct: 199 VEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNT 258

Query: 226 IVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           I+D L KDG+   A N+F  M+ K+ F    TY+ M++  C + R   A +LL   L+  
Sbjct: 259 IIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERK 318

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +        A+++     G   EA+++  ++
Sbjct: 319 INPDVVTFSALINAFVKEGKFFEAEELYDEM 349



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 2/197 (1%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L +A D    MV       ++ +  L+ +  + G+ +    L  +ME     
Sbjct: 54  SGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMP 113

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           C+ Y+ TIL+   C    +  A      + K+GF   +  +N ++  L  + +I  A+++
Sbjct: 114 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDL 173

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           F  M   +  T++++++ LC+  R+  A  LL   L+ G++  +     +VDG+   G  
Sbjct: 174 FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDT 233

Query: 303 REAKKIQSKIRMAKISH 319
             A  +  K  M ++SH
Sbjct: 234 VSALNLLRK--MEEVSH 248


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 137/284 (48%), Gaps = 4/284 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NG CK     NA ++ R     GF+P+  TY+ LI GLC  G 
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGD 371

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E  + G   + I Y T++K   +       L+++  M   G + D + Y  
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+    K+G L +A   +   +  G   DI ++NTLI+ YCK+  ++ A  +LD M   G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  L++GLCKA  +       + M + G   N+  YN +++   KD K+  A+
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM 551

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +F+ M+ +    D  T  +++  LC    L  A +L ++  K 
Sbjct: 552 ELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 140/271 (51%), Gaps = 6/271 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +++G  K      A  +F  + K G  P+++T+N LI  LCK G ++ +  +  ++   G
Sbjct: 187 VISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRG 246

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             PN  T+   ++   R         +L ++  +G T D   Y T+I  F K  +L EA 
Sbjct: 247 VCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAE 306

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
            Y+ +MV  GV+ +  +YNT+IN +CK G ++ A  +L +   +GF  D++T++ LI+GL
Sbjct: 307 CYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGL 366

Query: 196 CKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKD 250
           C  G++  A  +  E M K GF  ++  YN +V  L K G +  A+ + + M       D
Sbjct: 367 CNDGDMNRAMAVFYEAMEK-GFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +TY+ +V+ LCK   L  A+ +L   +  G
Sbjct: 426 IWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   ++N ++ G CK+     A      +   G  P   TYN +I G CKAG ++ A 
Sbjct: 282 LTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNAD 341

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL++    G  P+  TY++++     +      + +      KG+      Y T++   
Sbjct: 342 KILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGL 401

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + +A   M+ M+  G   DI +YN ++N  CK G L  A  +L++   +G   D 
Sbjct: 402 SKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDI 461

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T   LIDG CK  N+  A   L+ M   G   ++  YN +++ L K  K+D+ ++ F++
Sbjct: 462 FTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKA 521

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    +  TY+ ++ + CK +++  A +L 
Sbjct: 522 MLEKGCTPNIITYNILIESFCKDRKVSEAMELF 554



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 133/276 (48%), Gaps = 4/276 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+ +F  +  +   P + +YN ++  L + G    A  +   + D G  P+  T+T  MK
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                 +    L +L+ M  +G  F+   YC VI+ F K     EA    ++M+  G+  
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DI+++N LI++ CK+G ++ +  L  ++ K+G   + +T  I I GLC+ G I  A   L
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKA 264
           E +   G   ++ +YN ++    K  K+  A      M       + FTY+++++  CKA
Sbjct: 275 ESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKA 334

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             + +A K+L   +  G    +    ++++GL + G
Sbjct: 335 GMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDG 370



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 4/308 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   ++N ++N L +  Y   A +++  ++  G  P++ T+ I +K  C  GR   A
Sbjct: 106 DCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAA 165

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L  +   G   NA++Y  ++   ++         +   M ++G   D   +  +I  
Sbjct: 166 LRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHV 225

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G ++E+     +++  GV  ++ ++N  I   C++G ++ A  LL+ +  +G   D
Sbjct: 226 LCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++  LI G CK   +  A  +L  M   G + N   YN I++   K G + +A  +  
Sbjct: 286 VISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILR 345

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               K    D FTYSS+++ LC    +  A  +    ++ G +        +V GL   G
Sbjct: 346 DAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQG 405

Query: 301 CRREAKKI 308
              +A ++
Sbjct: 406 LVLQALQL 413



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 133/281 (47%), Gaps = 5/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N+++NGLCK     +A  +       G +P++ T+N LI G CK   +  A  
Sbjct: 423 SPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIE 482

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL  +   G  P+ ITY T++    + RK    ++   AM  KG T +   Y  +I +F 
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDK 185
           K  ++ EA +  ++M T G+  DIV+  TLI   C  G+L+ AY L   +EK+  F    
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-VFE 244
               I+I+  C+  N+  A      M       +   Y  ++D   K G ID A   + E
Sbjct: 603 AIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662

Query: 245 SME--VKDSFTYSSMVHN-LCKAKRLPSASKLLLSCLKSGV 282
           ++   +  SFT    V N LC   RL  A  ++   +++G+
Sbjct: 663 NISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGI 703



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 128/322 (39%), Gaps = 41/322 (12%)

Query: 28  NALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKEL--------------- 71
           NAL+MF  ++ + GF   L TY  +I+ L   G+      +L E+               
Sbjct: 22  NALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG 81

Query: 72  -----GDSGHA----------------PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
                G  G                  P+  +Y  IM        +    ++   MK  G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              D + +   + +F   GR   A   +  M   G + + VSY  +I+ + KE     AY
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAY 201

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            L DEM KQG   D  T   LI  LCK GN++ +      + K G   NL  +N  +  L
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261

Query: 231 GKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            + G ID A  + ES+       D  +Y++++   CK  +L  A   L   + SGV   +
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
                +++G   +G  + A KI
Sbjct: 322 FTYNTIINGFCKAGMMQNADKI 343


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 120/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 159 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGAN 218

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 219 ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGL 278

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A + +++M   G++ D ++Y TLI+  CKEG LE A+     M ++    D 
Sbjct: 279 CKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDD 338

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 339 VVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKE 398

Query: 246 ME 247
           M+
Sbjct: 399 MQ 400



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 139/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N L+ G  + G L     +   + 
Sbjct: 131 FNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 190

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 191 ASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 250

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A  L+DEM  +G + DK T+T LI
Sbjct: 251 LAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLI 310

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G+++ A  H + M +     +   Y  ++  L ++G+ +D    + E + V   
Sbjct: 311 DGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLK 370

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   + + SKLL    + G
Sbjct: 371 PDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 403



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 109/208 (52%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+++++NGLCK    D A  +F  +   G VP  VT+  LI G CK GR+  A  I
Sbjct: 196 PDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 255

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++     + + ITY T++    +    K    ++  M+ KG   D   Y T+I    K
Sbjct: 256 YKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCK 315

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L+ A ++ ++M+ + ++LD V Y TLI+  C+EG+   A  +L EM   G + D  T
Sbjct: 316 EGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGT 375

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG 215
           +T++I+  CK G++      L+ M + G
Sbjct: 376 YTMIINEFCKKGDVWTGSKLLKEMQRDG 403



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NIL+   CK G +R AR +   +   G
Sbjct: 99  VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWG 158

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++  A 
Sbjct: 159 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGAN 218

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 219 ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGL 278

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A+  ++ M   G   +   Y  ++D   K+G ++ A       + E++ + D
Sbjct: 279 CKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRL-D 337

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 338 DVVYTTLISGLCQEGRSVDAEKMLREMLSVGLK 370



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  P+  TY ++I   CK G + T   +LKE
Sbjct: 339 VVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKE 398

Query: 71  LGDSGHAPNAIT 82
           +   GH P+ +T
Sbjct: 399 MQRDGHVPSVVT 410



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK    + A    + + +     + V Y  LI GLC+ GR   A 
Sbjct: 299 LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAE 358

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT 112
            +L+E+   G  P+  TYT I+    +      G ++L  M+R G+ 
Sbjct: 359 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHV 405


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 146/283 (51%), Gaps = 4/283 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+ ++++ L ++     A+ +F  +++ G  P + TY ++I  +CK  +L   
Sbjct: 69  DCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEG 128

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R IL E+ + G  P+  TY  ++    +    +   EIL  M       +   Y  +I  
Sbjct: 129 RRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICG 188

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F +   +  A   + +M+   +   +V+YN+LI+  CK G L++AY LL+ M + G   D
Sbjct: 189 FCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPD 248

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           ++T+++ ID LCK G I+ A +    + + G  +N   Y  ++D   K GK+D A ++ +
Sbjct: 249 QWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLD 308

Query: 245 SMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            M  +D    S TY++++  LCK +++  A  L+ S ++ G++
Sbjct: 309 RMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLK 351



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 146/310 (47%), Gaps = 13/310 (4%)

Query: 16  MLNGLCK---------NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           M+NG CK         N   ++A  +F  + K G     V+Y  LI GLC+ GR+     
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           I K++ +    P   TYT I+   F + +    + + S M+ +G   +   Y  +I A  
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  +L+E    +++MV  G+   + +YN LI+ YCKEG +EAA  +LD M       ++ 
Sbjct: 121 KETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNER 180

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LI G C+  N+  A   L  M +     ++  YN ++    K G +D A  +   M
Sbjct: 181 TYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLM 240

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                V D +TYS  +  LCK  R+  A+ L  S  + G++  +    A++DG   +G  
Sbjct: 241 NENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKM 300

Query: 303 REAKKIQSKI 312
            +A  +  ++
Sbjct: 301 DDANSLLDRM 310



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 130/269 (48%), Gaps = 4/269 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   LTP   T+N +++G CK  Y D+A R+   + ++G VP+  TY++ I  LCK GR
Sbjct: 205 MLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGR 264

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   L + G   N + YT ++    +  K      +L  M  +    +   Y  
Sbjct: 265 IEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNA 324

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  +++EA   ME M+  G++  + +Y  LI    KEG  + A+ +LD+M   G
Sbjct: 325 LIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSG 384

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           ++ D Y +T  I   C  GNIK A   +  M + G   +   Y  ++D  G  G ++ A 
Sbjct: 385 YQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAF 444

Query: 241 NV----FESMEVKDSFTYSSMVHNLCKAK 265
           +V    F++       TYS ++ +L K +
Sbjct: 445 DVLKRMFDTGCDPSHHTYSCLIKHLLKEE 473



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 12/303 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +++G CK    + A  +   +  +   P   TYN LI G C+   
Sbjct: 135 MVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKN 194

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           +  A  +L ++ +S   P+ +TY +++    K  + +  Y+L    L+ M   G   D +
Sbjct: 195 VHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRL----LNLMNENGVVPDQW 250

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y   I    K GR++EA      +   G++ + V Y  LI+ YCK GK++ A  LLD M
Sbjct: 251 TYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +    +  T+  LIDGLCK   ++ A L +E M + G    +  Y  ++  + K+G  
Sbjct: 311 LTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDF 370

Query: 237 DHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           D+A  + + M       D + Y++ +H  C    +  A  ++    + GV         V
Sbjct: 371 DYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLV 430

Query: 293 VDG 295
           +D 
Sbjct: 431 IDA 433



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 29/257 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P ++T+N +++GLCK R    AL +   + + G    + TY ILI  + K G 
Sbjct: 310 MLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGD 369

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  IL ++  SG+ P+   YT  +         K   +++S M  +G   D   Y  
Sbjct: 370 FDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTL 429

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG---------------- 164
           VI A+  +G L  A D +++M   G      +Y+ LI    KE                 
Sbjct: 430 VIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPN 489

Query: 165 -------------KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                        K E A  L ++M + G   +  T+  LI GLCK G +  A+   ++M
Sbjct: 490 VFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHM 549

Query: 212 NKIGFDSNLEAYNCIVD 228
           N+ G   +   YN +++
Sbjct: 550 NERGVSPSEAIYNSLLN 566



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 110/278 (39%), Gaps = 29/278 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +   ++  C       A  M   + + G +P+ +TY ++I      G 
Sbjct: 380 MVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGL 439

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-------------------------- 94
           L  A  +LK + D+G  P+  TY+ ++K   +                            
Sbjct: 440 LNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVW 499

Query: 95  ---KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
              K++  LE+   M   G + +   Y  +I    K+GRL  A    + M   GV     
Sbjct: 500 KMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEA 559

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
            YN+L+N  C+ G    A  L+  M + G      +  +L  GL + G+ + A++    +
Sbjct: 560 IYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNL 619

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            + G++ +  A+  ++D L K+G  D    +   ME +
Sbjct: 620 LQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEAR 657



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 51/105 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P  A +N +LN  C+     +A+R+   + +HG +P L + N+L  GL + G    A+
Sbjct: 554 VSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAK 613

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
            +   L   G+  + + +  ++    +N       E+L  M+ +G
Sbjct: 614 VVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARG 658


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 151/310 (48%), Gaps = 16/310 (5%)

Query: 10  TATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
             + N+++  LCKN  T D A  +FR + K G  P+  TY  LI GLCK G+   A+ + 
Sbjct: 155 VVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELF 214

Query: 69  KELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           KE+   G +P+ +TY+ +M   C   N    +GL     MK+K    + F Y +++    
Sbjct: 215 KEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGL--FDKMKKKAIEPNVFTYSSLMDGLC 272

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G   EA + +E MV    + ++V+Y+TLIN  CKEGKL  A   LD M+ QG + D  
Sbjct: 273 KNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAG 332

Query: 187 THTILIDGLCKAGNIKGARLHLEYM-------NKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            +  +I+G C     + A  +L+ M       N++ +  +++  N +V  L  +G ++ +
Sbjct: 333 LYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRS 392

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             ++  M  +    D+ T+ S+V   CK   L  A+++    +  G         AVV G
Sbjct: 393 FQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGG 452

Query: 296 LRHSGCRREA 305
                  REA
Sbjct: 453 FWDRRKVREA 462



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 11/274 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+  ++NGLCK   T  A  +F+ +   G  P +VTY+ L+ GLC+AG +  A  +
Sbjct: 189 PDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGL 248

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++      PN  TY+++M    +N      +E+L  M RK +  +   Y T+I    K
Sbjct: 249 FDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCK 308

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L EA + +++M   G++ D   Y  +IN +C   K + A   LDEM       ++ T
Sbjct: 309 EGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVT 368

Query: 188 HTI-------LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            ++       ++ GLC  GN+  +      M   G   +   ++ +V    K G +  A 
Sbjct: 369 WSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAA 428

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
            +F+ M     V D   +S++V      +++  A
Sbjct: 429 RIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVREA 462



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 126/252 (50%), Gaps = 5/252 (1%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A+R+F  +   G  P   +Y  +   L +  +L+ A    K + + G   + ++   ++
Sbjct: 103 DAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLI 162

Query: 88  KC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           K  C  +       EI   M ++G   D + Y T+I    K+G+  EA +  ++M T G 
Sbjct: 163 KALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGC 222

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
              +V+Y+ L++  C+ G ++ A  L D+M+K+  E + +T++ L+DGLCK G    A  
Sbjct: 223 SPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAME 282

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLC 262
            LE M +     N+  Y+ +++ L K+GK+  A+   + M+++    D+  Y  +++  C
Sbjct: 283 LLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFC 342

Query: 263 KAKRLPSASKLL 274
             ++   A+  L
Sbjct: 343 NIRKFQEAATYL 354



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 8/211 (3%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T++ +++GLC+    D A+ +F  ++K    P + TY+ L+ GLCK G    A  
Sbjct: 223 SPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAME 282

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ +    H PN +TY+T++    +  K    +E L  MK +G   D   Y  +I  F 
Sbjct: 283 LLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFC 342

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSY-------NTLINLYCKEGKLEAAYLLLDEMEKQ 179
            I + +EA  Y+++MV   +  + V++       N ++   C  G L  ++ L   M  +
Sbjct: 343 NIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTR 402

Query: 180 GFECDKYTHTILIDGLCKAGNI-KGARLHLE 209
           G   D  T   L+   CK G++ K AR+  E
Sbjct: 403 GISIDAGTFDSLVKCFCKKGDLHKAARIFDE 433



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 117/276 (42%), Gaps = 40/276 (14%)

Query: 39  HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98
           +GF  +  T+ ++I  L  A   R A  +L  + +         + +I +   R      
Sbjct: 44  NGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLD 103

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            + +   M   G       Y +V A  V+  +LK A  + + M   GV+  +VS N LI 
Sbjct: 104 AIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIK 163

Query: 159 LYCK-EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
             CK  G ++AA+ +  EM K+G + D YT+  LI+GLCK G    A+   + M+  G  
Sbjct: 164 ALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCS 223

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------------------------- 249
            ++  Y+C++  L + G +D A+ +F+ M+ K                            
Sbjct: 224 PSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMEL 283

Query: 250 -----------DSFTYSSMVHNLCKAKRLPSASKLL 274
                      +  TYS++++ LCK  +L  A + L
Sbjct: 284 LEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETL 319



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 9/218 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ +++GLCKN  +  A+ +   + +    P +VTY+ LI GLCK G+L  A 
Sbjct: 257 IEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAV 316

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-------KRKGYTFDGFGY 118
             L  +   G  P+A  Y  I+      RK++     L  M        R  ++      
Sbjct: 317 ETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLN 376

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             V+      G L  +      M T G+ +D  ++++L+  +CK+G L  A  + DEM  
Sbjct: 377 NMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVL 436

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGA--RLHLEYMNKI 214
            G   D    + ++ G      ++ A   + +E MN+ 
Sbjct: 437 DGCVPDHGIWSAVVGGFWDRRKVREAFESIVVELMNEF 474



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 112/266 (42%), Gaps = 9/266 (3%)

Query: 52  IKGLCKAGR-LRTARWILKELG---DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
           ++ L +A R LR A+ I         +G   +  T+  ++       +++   E+L+ MK
Sbjct: 18  VEQLLRAERDLRKAKIIFDSASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMK 77

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
            +        + ++   + ++    +A     +M   G +    SY ++  +  +E +L+
Sbjct: 78  EEKCRITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLK 137

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCK-AGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
            A      M + G      +  +LI  LCK +G I  A      M K G D +   Y  +
Sbjct: 138 VAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTL 197

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++ L K GK   A  +F+ M+ K       TYS ++H LC+A  +  A  L     K  +
Sbjct: 198 INGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAI 257

Query: 283 RILKSAQKAVVDGLRHSGCRREAKKI 308
                   +++DGL  +G   EA ++
Sbjct: 258 EPNVFTYSSLMDGLCKNGGSLEAMEL 283



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 96/230 (41%), Gaps = 5/230 (2%)

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           RK K+  +  SA    G+  D   +  +I+  V     + A + + +M  +  ++    +
Sbjct: 29  RKAKIIFDSASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIF 88

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
            ++   Y +      A  +  +M   G +    ++  +   L +   +K A    +YM +
Sbjct: 89  LSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMRE 148

Query: 214 IGFDSNLEAYNCIVDRLGKD-GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
           +G   ++ + N ++  L K+ G ID A  +F  M  +    DS+TY ++++ LCK  +  
Sbjct: 149 MGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTF 208

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A +L       G          ++ GL  +G   EA  +  K++   I 
Sbjct: 209 EAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIE 258


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 140/278 (50%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C    P   T+NI+L   CK R    A+ +   ++  G  P  VTYN+L+ G+C  G 
Sbjct: 33  MLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGD 92

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+ L   G  P+ + Y T++K      ++    E+++ M R+    +   +  
Sbjct: 93  VDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNV 152

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI +  + G L++A   +E+M   G   +IV+YN +IN  C++  ++ A  LL +M+  G
Sbjct: 153 VIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYG 212

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+  L+ GLC A     A   ++ M + G   +   +N ++  L + G +  AI
Sbjct: 213 CKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAI 272

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            VF+ M  K    +S TYS+++  L KA +L  A +L 
Sbjct: 273 EVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELF 310



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 113/240 (47%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N++++G+C     D+AL + R L  HG  P  V YN ++KGLC A R   A  
Sbjct: 74  TPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADE 133

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++ E+      PN  T+  ++    R    +  +++L  M + G T +   Y  +I    
Sbjct: 134 LVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLC 193

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +   +  A   + +M + G + DIV+YNTL+   C   +   A  L+D M + G   D  
Sbjct: 194 EQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNV 253

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   LI  LC+ G +  A    + M   G   N   Y+ I+  L K  K+D A+ +F  M
Sbjct: 254 TFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM 313



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 132/272 (48%), Gaps = 5/272 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  ATFN+++  LC+      A+++   + KHG    +VTYN +I GLC+   +  A  +
Sbjct: 145 PNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGL 204

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G  P+ +TY T++K      ++    E++  M + G   D   + T+I    +
Sbjct: 205 LSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQ 264

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + +A +  +QM   G   + ++Y+T+I+   K  KL+ A  L +EM  +GF  DK  
Sbjct: 265 KGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDK-I 323

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + +L + L     I+ A   +  +   G   +   YN I+  L ++GK + AI++   M 
Sbjct: 324 YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMV 383

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
               + D  TY  ++  L     L  A +LL+
Sbjct: 384 SSGCMPDDLTYVILIEGLAYEGYLNEARELLI 415



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 126/243 (51%), Gaps = 4/243 (1%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P   TYN LI  LC+ G++R A  +L ++   G AP+ +TY  +++   + R Y+  +E+
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 64

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           +  M+ +G T +   Y  ++      G + +A + +  + + G +   V+YNT++   C 
Sbjct: 65  IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 124

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
             +   A  L+ EM ++    ++ T  ++I  LC+ G ++ A   LE M+K G  +N+  
Sbjct: 125 AERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVT 184

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN I++ L +   +D A+ +   M+      D  TY++++  LC A R   A +L+ +  
Sbjct: 185 YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMT 244

Query: 279 KSG 281
           ++G
Sbjct: 245 QNG 247



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 4/171 (2%)

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           VQ +  +YN LI+  C+ G++  A  +LD+M  +G   D  T+ IL++  CK    + A 
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
             ++ M   G   N   YN ++D +  +G +D A+ +  ++        +  Y++++  L
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           C A+R   A +L+   L+      ++    V+  L   G  ++A ++  K+
Sbjct: 123 CSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKM 173


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 10/312 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T NI L  LCK    +   R  + L + HGF P++VTY+ LIK   K G L  A  
Sbjct: 378 PNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALE 437

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++E+G  G   N IT  TI+    + RK      +L +  ++GY  D   Y T+I  + 
Sbjct: 438 MMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYF 497

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  ++++A +  ++M    +   + ++N+LI   C  GK E A    DE+ + G   D  
Sbjct: 498 REEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDC 557

Query: 187 THTILIDGLCKAGNIKGARLHLEYMN---KIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           T   +I G CK G ++ A    E+ N   K  F  +    N +++ L K+G  + A+N F
Sbjct: 558 TFNSIILGYCKEGRVEKA---FEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFF 614

Query: 244 ESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            ++  +   D+ TY++M+   CK K+L  A  LL    +  +   +    +++  L   G
Sbjct: 615 NTLITEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDG 674

Query: 301 CRREAKKIQSKI 312
              EA ++  K 
Sbjct: 675 KLSEADELLKKF 686



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 141/301 (46%), Gaps = 5/301 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+N +L  + K     +   +   ++++G VP  VTYN L+ G CK G L+ A
Sbjct: 235 NVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEA 294

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             I++ +  +   P+  TY  ++         + GLE++  MK      D   Y T+I  
Sbjct: 295 FQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDG 354

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFEC 183
             ++G   EA   MEQM  DGV+ + V++N  +   CKE K E     + E+ E  GF  
Sbjct: 355 CFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSP 414

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  LI    K G++ GA   +  M + G   N    N I+D L K+ K+D A N+ 
Sbjct: 415 DIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLL 474

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           +S      + D  TY +++    + +++  A ++     +  +    +   +++ GL H 
Sbjct: 475 DSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHH 534

Query: 300 G 300
           G
Sbjct: 535 G 535



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 139/307 (45%), Gaps = 13/307 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDN-----ALRMFRGLQKHGFVPELVTYNILIKGL 55
           MI   L P   T N +L GL   RY  +     A  +F  + K G   ++ T+N+L+ G 
Sbjct: 157 MIRLKLKPNLLTCNTLLIGLV--RYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGY 214

Query: 56  CKAGRLRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           C  G+L  A  +L+ +    +  P+ +TY TI+K   +  +     ++L  MKR G   +
Sbjct: 215 CLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPN 274

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
              Y  ++  + K+G LKEA   +E M    +  D+ +YN LIN  C  G +     L+D
Sbjct: 275 RVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMD 334

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            M+    + D  T+  LIDG  + G    A+  +E M   G   N   +N  +  L K+ 
Sbjct: 335 VMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEE 394

Query: 235 KIDHAI-NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           K +     V E +E+     D  TY +++    K   L  A +++    + G+++     
Sbjct: 395 KREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITL 454

Query: 290 KAVVDGL 296
             ++D L
Sbjct: 455 NTILDAL 461



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 128/268 (47%), Gaps = 10/268 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK---AGRLRTA 64
           P  A F+I L+          AL++F+ + +    P L+T N L+ GL +   +  + +A
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASA 188

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIA 123
           R +  ++   G + +  T+  ++       K +  L +L  M  +     D   Y T++ 
Sbjct: 189 REVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILK 248

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  K GRL +  D +  M  +G+  + V+YN L+  YCK G L+ A+ +++ M++     
Sbjct: 249 AMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILP 308

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+ ILI+G+C AG+I+     ++ M  +    ++  YN ++D   + G    A  + 
Sbjct: 309 DLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLM 368

Query: 244 ESMEVKDSFTYSSMVHN-----LCKAKR 266
           E ME  D    + + HN     LCK ++
Sbjct: 369 EQME-NDGVKPNQVTHNISLKWLCKEEK 395



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   TFN ++ GLC +  T+ A+  F  L + G +P+  T+N +I G CK GR+  A 
Sbjct: 517 ITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAF 576

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E       P+  T   ++    +    +  L   + +  +    D   Y T+I+AF
Sbjct: 577 EFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITE-REVDTVTYNTMISAF 635

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
            K  +LKEA D + +M    ++ D  +YN++I    ++GKL  A  LL
Sbjct: 636 CKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELL 683



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 9/187 (4%)

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILI 192
           A +  + MV  GV LD+ ++N L+N YC EGKLE A  +L+ M  +     D  T+  ++
Sbjct: 188 AREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTIL 247

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
             + K G +   +  L  M + G   N   YN +V    K G +  A  + E M+    +
Sbjct: 248 KAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNIL 307

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL--LSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            D  TY+ +++ +C A  +    +L+  +  LK    ++      ++DG    G   EAK
Sbjct: 308 PDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVV--TYNTLIDGCFELGLSLEAK 365

Query: 307 KIQSKIR 313
           K+  ++ 
Sbjct: 366 KLMEQME 372



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 65/154 (42%), Gaps = 25/154 (16%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T NI+LNGLCK   T+ AL  F  L     V + VTYN +I   CK  +L+ A  +
Sbjct: 589 PDNYTCNILLNGLCKEGMTEKALNFFNTLITEREV-DTVTYNTMISAFCKDKKLKEAYDL 647

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS-------AMKR------------ 108
           L E+ +    P+  TY +I+     + K     E+L        +MKR            
Sbjct: 648 LSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKFSGKFGSMKRNLHLETEKNPAT 707

Query: 109 ----KGYTFDGFGYCTVIAAFVKIGRLKE-ATDY 137
               +    +   Y  VI      GRLKE +T Y
Sbjct: 708 SESKEELKTEAIAYSDVINELCSRGRLKEHSTSY 741



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 100/204 (49%), Gaps = 8/204 (3%)

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL-INL--YCKEGKLEAAYLLLDEMEK 178
           ++A++  G+   A    ++M+   ++ ++++ NTL I L  Y     + +A  + D+M K
Sbjct: 138 LSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASAREVFDDMVK 197

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKID 237
            G   D  T  +L++G C  G ++ A   LE M ++   + +   YN I+  + K G++ 
Sbjct: 198 IGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLS 257

Query: 238 HAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
              ++   M+    V +  TY+++V+  CK   L  A +++    ++ +         ++
Sbjct: 258 DVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILI 317

Query: 294 DGLRHSGCRREAKKIQSKIRMAKI 317
           +G+ ++G  RE  ++   ++  K+
Sbjct: 318 NGVCNAGSIREGLELMDVMKSLKL 341


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 137/284 (48%), Gaps = 4/284 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NG CK     NA ++ R     GF+P+  TY+ LI GLC  G 
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGD 371

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E  + G   + I Y T++K   +       L+++  M   G + D + Y  
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+    K+G L +A   +   +  G   DI ++NTLI+ YCK+  ++ A  +LD M   G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  L++GLCKA  +       + M + G   N+  YN +++   KD K+  A+
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM 551

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +F+ M+ +    D  T  +++  LC    L  A +L ++  K 
Sbjct: 552 ELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 140/271 (51%), Gaps = 6/271 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +++G  K      A  +F  + K G  P+++T+N LI  LCK G ++ +  +  ++   G
Sbjct: 187 VISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRG 246

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             PN  T+   ++   R         +L ++  +G T D   Y T+I  F K  +L EA 
Sbjct: 247 VCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAE 306

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
            Y+ +MV  GV+ +  +YNT+IN +CK G ++ A  +L +   +GF  D++T++ LI+GL
Sbjct: 307 CYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGL 366

Query: 196 CKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKD 250
           C  G++  A  +  E M K GF  ++  YN +V  L K G +  A+ + + M       D
Sbjct: 367 CNDGDMNRAMAVFYEAMEK-GFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +TY+ +V+ LCK   L  A+ +L   +  G
Sbjct: 426 IWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   ++N ++ G CK+     A      +   G  P   TYN +I G CKAG ++ A 
Sbjct: 282 LTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNAD 341

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL++    G  P+  TY++++     +      + +      KG+      Y T++   
Sbjct: 342 KILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGL 401

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + +A   M+ M+  G   DI +YN ++N  CK G L  A  +L++   +G   D 
Sbjct: 402 SKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDI 461

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T   LIDG CK  N+  A   L+ M   G   ++  YN +++ L K  K+D+ ++ F++
Sbjct: 462 FTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKA 521

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M  K    +  TY+ ++ + CK +++  A +L 
Sbjct: 522 MLEKGCTPNIITYNILIESFCKDRKVSEAMELF 554



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 133/276 (48%), Gaps = 4/276 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+ +F  +  +   P + +YN ++  L + G    A  +   + D G  P+  T+T  MK
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                 +    L +L+ M  +G  F+   YC VI+ F K     EA    ++M+  G+  
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DI+++N LI++ CK+G ++ +  L  ++ K+G   + +T  I I GLC+ G I  A   L
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKA 264
           E +   G   ++ +YN ++    K  K+  A      M       + FTY+++++  CKA
Sbjct: 275 ESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKA 334

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             + +A K+L   +  G    +    ++++GL + G
Sbjct: 335 GMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDG 370



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 4/308 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   ++N ++N L +  Y   A +++  ++  G  P++ T+ I +K  C  GR   A
Sbjct: 106 DCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAA 165

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L  +   G   NA++Y  ++   ++         +   M ++G   D   +  +I  
Sbjct: 166 LRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHV 225

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G ++E+     +++  GV  ++ ++N  I   C++G ++ A  LL+ +  +G   D
Sbjct: 226 LCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++  LI G CK   +  A  +L  M   G + N   YN I++   K G + +A  +  
Sbjct: 286 VISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILR 345

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               K    D FTYSS+++ LC    +  A  +    ++ G +        +V GL   G
Sbjct: 346 DAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQG 405

Query: 301 CRREAKKI 308
              +A ++
Sbjct: 406 LVLQALQL 413



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 132/281 (46%), Gaps = 5/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N+++NGLCK     +A  +       G +P++ T+N LI G CK   +  A  
Sbjct: 423 SPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIE 482

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           IL  +   G  P+ ITY T++    + RK    ++   AM  KG T +   Y  +I +F 
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDK 185
           K  ++ EA +  ++M T G+  DIV+  TLI   C  G+L+ AY L   +EK+  F    
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-VFE 244
               I+I+  C   N+  A      M       +   Y  ++D   K G ID A   + E
Sbjct: 603 AIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662

Query: 245 SME--VKDSFTYSSMVHN-LCKAKRLPSASKLLLSCLKSGV 282
           ++   +  SFT    V N LC   RL  A  ++   +++G+
Sbjct: 663 NISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGI 703



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 128/322 (39%), Gaps = 41/322 (12%)

Query: 28  NALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKEL--------------- 71
           NAL+MF  ++ + GF   L TY  +I+ L   G+      +L E+               
Sbjct: 22  NALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG 81

Query: 72  -----GDSGHA----------------PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
                G  G                  P+  +Y  IM        +    ++   MK  G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              D + +   + +F   GR   A   +  M   G + + VSY  +I+ + KE     AY
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAY 201

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            L DEM KQG   D  T   LI  LCK GN++ +      + K G   NL  +N  +  L
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261

Query: 231 GKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            + G ID A  + ES+       D  +Y++++   CK  +L  A   L   + SGV   +
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
                +++G   +G  + A KI
Sbjct: 322 FTYNTIINGFCKAGMMQNADKI 343


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 140/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++N  C+    + A  +   +   G  P + TYN +I GLCK G+   A+ +
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G +P+  TY  ++  C RN        I   M  +G   D   +  +I    K
Sbjct: 190 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 249

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L +A  Y   M   G+  D V Y  LI  +C+ G +  A  + DEM +QG   D  T
Sbjct: 250 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 309

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +++GLCK   +  A      M + G   +   +  +++   KDG ++ A+ +FE M 
Sbjct: 310 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 369

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++   CK   +   ++L    +   +     +   +++G  + GC  
Sbjct: 370 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 429

Query: 304 EAKKIQSKI 312
           EA ++  ++
Sbjct: 430 EAFRLWDEM 438



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 149/311 (47%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + I++ G C+N     AL++   + + G V ++VTYN ++ GLCK   L  A 
Sbjct: 268 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEAD 327

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  P+  T+TT++    ++      + +   M ++    D   Y T+I  F
Sbjct: 328 ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 387

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   +++  +    M++  +  + +SY  LIN YC  G +  A+ L DEM ++GFE   
Sbjct: 388 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI 447

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   ++ G C+AGN   A   L  M   G   +   YN +++   K+  +D A  +   
Sbjct: 448 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 507

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME    + D  TY+ +++   +  R+  A  ++L  ++ GV   +S   ++++G      
Sbjct: 508 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNN 567

Query: 302 RREAKKIQSKI 312
            +EA ++  ++
Sbjct: 568 LKEAFRVHDEM 578



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 143/316 (45%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L PC  T+N ++NGLCK      A  +   + K G  P+  TYNIL+   C+   +  A 
Sbjct: 163 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 222

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+   G  P+ ++++ ++    +N      L+    MK  G   D   Y  +I  F
Sbjct: 223 RIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 282

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA    ++M+  G  LD+V+YNT++N  CKE  L  A  L  EM ++G   D 
Sbjct: 283 CRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 342

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT T LI+G  K GN+  A    E M +     ++  YN ++D   K  +++    ++  
Sbjct: 343 YTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWND 402

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    +  +Y  +++  C    +  A +L    ++ G          +V G   +G 
Sbjct: 403 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 462

Query: 302 RREAKKIQSKIRMAKI 317
             +A +  S + +  I
Sbjct: 463 AVKADEFLSNMLLKGI 478



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F++++    + R        FR L+  G    +   N L+ GL K G +  A  I +E+
Sbjct: 29  VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 88

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG   N  T   ++    +N+K +     LS M+ KG   D   Y T+I A+ + G L
Sbjct: 89  VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 148

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +EA + M+ M   G++  + +YN +IN  CK GK   A  +LDEM K G   D  T+ IL
Sbjct: 149 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 208

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           +   C+  N+  A    + M   G   +L +++ ++  L K+G +D A+  F  M+    
Sbjct: 209 LVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 268

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D+  Y+ ++   C+   +  A K+    L+ G  +       +++GL       EA +
Sbjct: 269 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADE 328

Query: 308 IQSKI 312
           + +++
Sbjct: 329 LFTEM 333



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 2/217 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +L P   T+N +++G CK    +    ++  +      P  ++Y ILI G C  G 
Sbjct: 368 MIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGC 427

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ + G     IT  TI+K   R        E LS M  KG   DG  Y T
Sbjct: 428 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 487

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F+K   +  A   + +M   G+  D+++YN ++N + ++G+++ A L++ +M ++G
Sbjct: 488 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 547

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGF 216
              D+ T+T LI+G     N+K A R+H E + + GF
Sbjct: 548 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR-GF 583



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 91/184 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   ++ I++NG C       A R++  + + GF   ++T N ++KG C+AG 
Sbjct: 403 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 462

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A   L  +   G  P+ ITY T++    +         +++ M+  G   D   Y  
Sbjct: 463 AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNV 522

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + GR++EA   M +M+  GV  D  +Y +LIN +  +  L+ A+ + DEM ++G
Sbjct: 523 ILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 582

Query: 181 FECD 184
           F  D
Sbjct: 583 FVPD 586


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 139/270 (51%), Gaps = 4/270 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           NI+L GLC+N     A+ + R ++++  +P++ +YN +I+G C+   L  A  +  E+  
Sbjct: 146 NILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKG 205

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           SG + + +T+  ++    +  K    +  L  MK  G   D   Y ++I  F   G L  
Sbjct: 206 SGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDR 265

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
                ++++  G     ++YNTLI  +CK G+L+ A  + + M ++G   + YT+T LID
Sbjct: 266 GKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLID 325

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           GLC  G  K A   L  M +   + N   YN I+++L KDG +  A+ + E M+ +    
Sbjct: 326 GLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRP 385

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           D+ TY+ ++  LC    L  ASKLL   LK
Sbjct: 386 DNITYNILLGGLCAKGDLDEASKLLYLMLK 415



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 147/292 (50%), Gaps = 17/292 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++ G C+ +  + AL +   ++  G    LVT+ ILI   CKAG++  A 
Sbjct: 173 LMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAM 232

Query: 66  WILKELGDSGHAPNAITYTTIMK----CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             LKE+   G   + + YT++++    C   +R   L  E+L     +G +     Y T+
Sbjct: 233 GFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVL----ERGDSPCAITYNTL 288

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F K+G+LKEA++  E M+  GV+ ++ +Y  LI+  C  GK + A  LL+ M ++  
Sbjct: 289 IRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDE 348

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E +  T+ I+I+ LCK G +  A   +E M K     +   YN ++  L   G +D A  
Sbjct: 349 EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASK 408

Query: 242 VFESMEVKDSFT------YSSMVHNLCKAKRLPSA---SKLLLSCLKSGVRI 284
           +   M    S+T      Y++++H LCK  RL  A     LL+  L +G R+
Sbjct: 409 LLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRV 460



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 155/313 (49%), Gaps = 6/313 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I+++  CK    D A+   + ++  G   +LV Y  LI+G C  G L   + +  E
Sbjct: 213 VTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDE 272

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + + G +P AITY T+++   +  + K   EI   M  +G   + + Y  +I     +G+
Sbjct: 273 VLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGK 332

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            KEA   +  M+    + + V+YN +IN  CK+G +  A  +++ M+K+    D  T+ I
Sbjct: 333 TKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNI 392

Query: 191 LIDGLCKAGNIKGAR--LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF----E 244
           L+ GLC  G++  A   L+L   +    D ++ +YN ++  L K+ ++  A++++    E
Sbjct: 393 LLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE 452

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
            +   D  T + ++++  KA  +  A +L      S +        A++DG   +G    
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNV 512

Query: 305 AKKIQSKIRMAKI 317
           AK +  K+R++++
Sbjct: 513 AKGLLCKMRVSEL 525



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 144/320 (45%), Gaps = 42/320 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD +PC  T+N ++ G CK      A  +F  + + G  P + TY  LI GLC  G+ + 
Sbjct: 277 GD-SPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  + +    PNA+TY  I+    ++      +EI+  MK++    D   Y  ++ 
Sbjct: 336 ALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLG 395

Query: 124 AFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLD------- 174
                G L EA+  +  M+ D      D++SYN LI+  CKE +L  A  + D       
Sbjct: 396 GLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLG 455

Query: 175 ------------------------EMEKQGFEC----DKYTHTILIDGLCKAGNIKGARL 206
                                   E+ KQ  +     +  T+T +IDG CK G +  A+ 
Sbjct: 456 AGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKG 515

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLC 262
            L  M       ++  YNC++  L K+G +D A  +FE M+  ++F    +++ M+    
Sbjct: 516 LLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSL 575

Query: 263 KAKRLPSASKLLLSCLKSGV 282
           KA  + SA  LL+   ++G+
Sbjct: 576 KAGDIKSAESLLVGMSRAGL 595



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 2/241 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTAR 65
           P   T+NI+L GLC     D A ++   + K      P++++YN LI GLCK  RL  A 
Sbjct: 385 PDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQAL 444

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   L +   A + +T   ++    +       +E+   +       +   Y  +I  F
Sbjct: 445 DIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L  A   + +M    +Q  +  YN L++  CKEG L+ A+ L +EM++     D 
Sbjct: 505 CKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDV 564

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +  I+IDG  KAG+IK A   L  M++ G   +L  Y+ +++R  K G +D AI+ F+ 
Sbjct: 565 VSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDK 624

Query: 246 M 246
           M
Sbjct: 625 M 625



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 4/265 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N ++  L ++R  + A   +R + +       V+ + L++   +  +   A  +L  +  
Sbjct: 76  NNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLK 135

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G A N   +  ++K   RN +    + +L  M+R     D F Y TVI  F +   L++
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A +   +M   G    +V++  LI+ +CK GK++ A   L EM+  G E D   +T LI 
Sbjct: 196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIR 255

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           G C  G +   +   + + + G       YN ++    K G++  A  +FE M  +    
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRP 315

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLL 274
           + +TY+ ++  LC   +   A +LL
Sbjct: 316 NVYTYTGLIDGLCGVGKTKEALQLL 340



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 112/243 (46%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N +++GLCK      AL ++  L +     + VT NIL+    KAG +  A  +
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            K++ DS    N+ TYT ++    +     +   +L  M+        F Y  ++++  K
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L +A    E+M  D    D+VS+N +I+   K G +++A  LL  M + G   D +T
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LI+   K G +  A    + M   GF+ +    + ++      G+ D    + + + 
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLV 661

Query: 248 VKD 250
            KD
Sbjct: 662 DKD 664



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 88/189 (46%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           + T+  M++G CK    + A  +   ++     P +  YN L+  LCK G L  A  + +
Sbjct: 494 SDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFE 553

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+    + P+ +++  ++    +    K    +L  M R G + D F Y  +I  F+K+G
Sbjct: 554 EMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLG 613

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L EA  + ++MV  G + D    ++++     +G+ +    L+ ++  +    DK    
Sbjct: 614 YLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTC 673

Query: 190 ILIDGLCKA 198
            ++D +C +
Sbjct: 674 TVMDYMCNS 682



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +L P    +N +L+ LCK    D A R+F  +Q+    P++V++NI+I G  KAG 
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGD 579

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG-----LEILSAMKRKGYTFDG 115
           +++A  +L  +  +G +P+  TY+ ++     NR  KLG     +     M   G+  D 
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLI-----NRFLKLGYLDEAISFFDKMVDSGFEPDA 634

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
               +V+   +  G   + T+ ++++V   + LD     T+++  C
Sbjct: 635 HICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMC 680


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 138/277 (49%), Gaps = 7/277 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +  +++ LCKN + + AL +F  ++ +G  P++V Y  L+ GLC +GR
Sbjct: 168 MVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R A  +L+ +      P+ IT+  ++    +  K+    E+ + M R     + F Y +
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F   G + EA      M T G   D+V+Y +LIN +CK  K++ A  +  EM ++G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T LI G  + G    A+    +M   G   N+  YN ++  L  +GK+  A+
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407

Query: 241 NVFESMEVKDS-------FTYSSMVHNLCKAKRLPSA 270
            +FE M+ ++        +TY+ ++H LC   +L  A
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKA 444



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 4/275 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T N+++N  C++     A      + K GF P++VT+  LI G C   R+  A  ++ ++
Sbjct: 109 TCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQM 168

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+ + YTTI+    +N      L +   M+  G   D   Y +++      GR 
Sbjct: 169 VEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRW 228

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A   +  M    ++ D++++N LI+ + KEGK   A  L +EM +     + +T+T L
Sbjct: 229 RDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSL 288

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I+G C  G +  AR     M   G   ++ AY  +++   K  K+D A+ +F  M  K  
Sbjct: 289 INGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGL 348

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             ++ TY++++    +  +   A ++    +  GV
Sbjct: 349 TGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGV 383



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 134/263 (50%), Gaps = 7/263 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN +++   K     +A  ++  + +    P + TY  LI G C  G +  AR
Sbjct: 243 IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEAR 302

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +   G  P+ + YT+++    + +K    ++I   M +KG T +   Y T+I  F
Sbjct: 303 QMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGF 362

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFE 182
            ++G+   A +    MV+ GV  +I +YN L++  C  GK++ A ++ ++M+K+   G  
Sbjct: 363 GQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVA 422

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            + +T+ +L+ GLC  G ++ A +  E M K   D  +  Y  I+  + K GK+ +A+N+
Sbjct: 423 PNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNL 482

Query: 243 FESMEVK----DSFTYSSMVHNL 261
           F S+  K    +  TY++M+  L
Sbjct: 483 FCSLPSKGVKPNVVTYTTMISGL 505



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 138/310 (44%), Gaps = 6/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  +LN + K +  D  + +   LQ  G   +L T N+L+   C++ +   A   
Sbjct: 70  PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L ++   G  P+ +T+T+++   C  NR  +  + +++ M   G   D   Y T+I +  
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEE-AMSMVNQMVEMGIKPDVVMYTTIIDSLC 188

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G +  A    +QM   G++ D+V Y +L+N  C  G+   A  LL  M K+  + D  
Sbjct: 189 KNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI 248

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   LID   K G    A      M ++    N+  Y  +++    +G +D A  +F  M
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           E K    D   Y+S+++  CK K++  A K+     + G+         ++ G    G  
Sbjct: 309 ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368

Query: 303 REAKKIQSKI 312
             A+++ S +
Sbjct: 369 NVAQEVFSHM 378



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 5/252 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           I+ NGL   ++ + AL +F  + +   +P ++ +  L+  + K  +      +   L   
Sbjct: 43  ILRNGLHSLQFNE-ALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIM 101

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G + +  T   +M C  ++ +  L    L  M + G+  D   + ++I  F    R++EA
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              + QMV  G++ D+V Y T+I+  CK G +  A  L D+ME  G   D   +T L++G
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKD 250
           LC +G  + A   L  M K     ++  +N ++D   K+GK   A  ++  M       +
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPN 281

Query: 251 SFTYSSMVHNLC 262
            FTY+S+++  C
Sbjct: 282 IFTYTSLINGFC 293



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/284 (19%), Positives = 131/284 (46%), Gaps = 4/284 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL   R L    +V     Y  +++    + +   A  +   + +S   P+ I +T ++ 
Sbjct: 21  ALSFSRLLDLSFWVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLN 80

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              + +K+ + + +   ++  G + D +    ++  F +  +   A+ ++ +M+  G + 
Sbjct: 81  VIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEP 140

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DIV++ +LIN +C   ++E A  ++++M + G + D   +T +ID LCK G++  A    
Sbjct: 141 DIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLF 200

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           + M   G   ++  Y  +V+ L   G+   A ++   M  +    D  T+++++    K 
Sbjct: 201 DQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKE 260

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +   A +L    ++  +        ++++G    GC  EA+++
Sbjct: 261 GKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQM 304



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LT  T T+  ++ G  +    + A  +F  +   G  P + TYN+L+  LC  G+++ A 
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407

Query: 66  WILKELGD---SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            I +++      G APN  TY  ++     N K +  L +   M+++        Y  +I
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIII 467

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
               K G++K A +    + + GV+ ++V+Y T+I+   +EG    A++L  +M++ G
Sbjct: 468 QGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 153/296 (51%), Gaps = 11/296 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N++  GLCK    D AL +F  ++++  VP L+TYN L+ G C+AGR+  A  +L+E+
Sbjct: 143 SYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEM 202

Query: 72  --GDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             G  G    P+  +Y T++    + R+      +L  M + G + +   + T++     
Sbjct: 203 IEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCL 262

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L EA    E MV    +   V+Y  LI  + +  +++ A     +M ++G E + YT
Sbjct: 263 TGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYT 322

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ESM 246
           +T LI GLC A  ++ A   L+ M+  G + N+  Y  ++  L K G+I+ A  +F ++M
Sbjct: 323 YTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAM 382

Query: 247 EVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             +      DS+ YS++V+ LC+  +   A +  L  ++S +       KA+ DGL
Sbjct: 383 GSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGL 438



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 9/300 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D      T+N  LN L K  +   A ++F  +     +P + TY I+++GLC   +   A
Sbjct: 32  DFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAA 91

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+++      P       ++ C  +N K     E+   +  +  + D   Y  +   
Sbjct: 92  LELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDEC-SLDRISYNMLTYG 150

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM--EKQGFE 182
             K  ++  A     +M  + V   +++YN L+  YC+ G++E A  LL+EM   K+G +
Sbjct: 151 LCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSD 210

Query: 183 C--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D Y++  +I G CKA  +  AR  L  M K G   N+  +N ++D L   GK+D A 
Sbjct: 211 VVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEAN 270

Query: 241 NVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +FE M  ++    + TY+ ++    +A R+  A+   +  L+ GV        A++ GL
Sbjct: 271 AMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGL 330



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 130/313 (41%), Gaps = 49/313 (15%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            D+ P   ++N +++G CK R    A  + R + K G  P +VT+N L+ GLC  G+L  
Sbjct: 209 SDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDE 268

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + + + +    P A+TYT +                                   I 
Sbjct: 269 ANAMFEYMVERNCEPTAVTYTVL-----------------------------------IT 293

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              +  R+ +A DY   M+  GV+ ++ +Y  LI   C   K+E A  +L  M   G E 
Sbjct: 294 GHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREP 353

Query: 184 DKYTHTILIDGLCKAGNIKGA-RLHLEYMN----KIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +  T+T +I  LCK G I+ A +L  + M     K   DS   AY+ IV  L +  K   
Sbjct: 354 NVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSY--AYSTIVYWLCRQSKFLE 411

Query: 239 AINVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A   F    ES  V     Y +M   L   + +    K+   CL++    ++  QK    
Sbjct: 412 AYEYFLRMVESKLVAKPHIYKAMADGL---ELVQETEKVERVCLEASAHGIELQQKDAPQ 468

Query: 295 GLRHSGCRREAKK 307
            L     RR+A+K
Sbjct: 469 PLNPHLPRRKARK 481



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 3/198 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   TFN +L+GLC     D A  MF  + +    P  VTY +LI G  +A R
Sbjct: 241 MIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALR 300

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     ++   G  PN  TYT ++       K +  LEIL  M   G   +   Y  
Sbjct: 301 IDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTR 360

Query: 121 VIAAFVKIGRLKEATDYMEQMV---TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           VI A  K G+++ AT      +   T   + D  +Y+T++   C++ K   AY     M 
Sbjct: 361 VIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMV 420

Query: 178 KQGFECDKYTHTILIDGL 195
           +       + +  + DGL
Sbjct: 421 ESKLVAKPHIYKAMADGL 438



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           A +++ +    F Y   + A VK G   +A    + M+      +I +Y  ++   C + 
Sbjct: 27  AARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDA 86

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE--A 222
           K +AA  LL +ME +      +   +L+  LCK G +  A    E   ++  + +L+  +
Sbjct: 87  KTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAA---YELYKRLSDECSLDRIS 143

Query: 223 YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           YN +   L K  +ID A+ VF  ME    V    TY+ +++  C+A R+  A  LL
Sbjct: 144 YNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLL 199


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 142/297 (47%), Gaps = 9/297 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P  + +N  ++ LCK+     A+ + + ++     P++VT+N LI GLCKAGRL  A+
Sbjct: 50  MAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQ 109

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+  SG A N +TY T++       +    + ++  M     T D   Y  +I  F
Sbjct: 110 QVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGF 166

Query: 126 VKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            K G +  A  ++E+M    G   D  +Y+ LIN  CK   L  A  LL EM  +   C 
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226

Query: 185 KYT-HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
                  L+DG CKA ++  AR  L  M + G   ++  Y+ I+D L + G +D    + 
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALL 286

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           E M  +    D  TY+ +V  LCKA ++  A +L+   L+ G          V DGL
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGL 343



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 9/284 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   TFN ++ GLCK    D A ++   +++ GF   LVTYN LI GL  AGR   
Sbjct: 83  GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGE 142

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-RKGYTFDGFGYCTVI 122
           A  +++ +  +   P+  TY  I+    ++ +       L  MK R G + D F Y  +I
Sbjct: 143 AVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILI 199

Query: 123 AAFVKIGRLKEATDYMEQMV-TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
               K   L++A + +++M+        +V++NTL++ YCK   L+ A  LL  M + G 
Sbjct: 200 NGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGC 259

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D  T++ +IDGLC+ G++      LE M   G   ++  Y  +V  L K GK+  A  
Sbjct: 260 APDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACR 319

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           + + M       ++ TYS +   LCK  +L  A+ LL S    G
Sbjct: 320 LVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 151/308 (49%), Gaps = 10/308 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           T+ +++   C       A+ + R + Q+ G  P    YN  +  LCK+G++  A  ++K 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D    P+ +T+ T++    +  +     ++L  M+R G+  +   Y T+I      GR
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKYTHT 189
             EA   M+ M T     D  +YN +I+ +CK G+++ AY  L+EM ++ G   D +T++
Sbjct: 140 SGEAVLVMQGMTTTP---DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYS 196

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           ILI+GLCK+ N++ A  L  E + +    +++ A+N +VD   K   +D A  +  SM  
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE 256

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                D  TYS+++  LC+   +     LL   +  G +        +V GL  +G   E
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 305 AKKIQSKI 312
           A ++  ++
Sbjct: 317 ACRLVKRM 324



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 2/223 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           TP T T+N +++G CK+   D A      + Q+ G  P+  TY+ILI GLCK+  LR A 
Sbjct: 153 TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKAD 212

Query: 66  WILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +L+E+ G      + + + T++    + +      E+LS+M   G   D   Y T+I  
Sbjct: 213 ELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDG 272

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + G + +    +E+MV+ G + D+V+Y  L+   CK GK+  A  L+  M + G   +
Sbjct: 273 LCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPN 332

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
             T++++ DGLCK   +  A   L  +   G  +++ A+  ++
Sbjct: 333 AVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D       FN +++G CK +  D A  +   + +HG  P++VTY+ +I GLC+ G +   
Sbjct: 223 DCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKG 282

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+++   G  P+ +TYT ++    +  K      ++  M   G T +   Y  V   
Sbjct: 283 FALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDG 342

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             KI +L  A D +  +   G   D+V++  L+
Sbjct: 343 LCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 37/164 (22%)

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---------------------------- 179
            D  +Y  L+  +C  G+L+AA  LL EME+Q                            
Sbjct: 16  FDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAME 75

Query: 180 --------GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
                     + D  T   LI GLCKAG +  A+  L+ M + GF +NL  YN +++ L 
Sbjct: 76  VVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135

Query: 232 KDGKIDHAINVFESM-EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
             G+   A+ V + M    D+ TY++++H  CK+  +  A   L
Sbjct: 136 SAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFL 179


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 39/346 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T+NIM+ G C     + A+R+ + +   G  P++VTY +LI+  CK GR   AR
Sbjct: 269 VMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEAR 328

Query: 66  WILKELGDSGHAPNAITYTTIMK----------------------CCFRNRKYKL----- 98
            +   +   G  PN+  Y  ++                         F +R + +     
Sbjct: 329 SVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAY 388

Query: 99  --------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                    +   + M++ G   D   Y TVI    KIGR+++A  +  QMV++G+  +I
Sbjct: 389 AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNI 448

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           +S+ +LI+  C  G+ +    L  EM  +G   D      ++D LCK G +  A+   + 
Sbjct: 449 ISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDM 508

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           +  IG   N+ +YN ++D     GK+D +I  F+ M       DS+TY+++++   K  R
Sbjct: 509 VIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGR 568

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  A  L     +  V+        ++ GL  +G    A+++  K+
Sbjct: 569 VEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKM 614



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 137/303 (45%), Gaps = 43/303 (14%)

Query: 11  ATFNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLC------------- 56
            T N ++ GLC  + TD+A+ M FR + + G+ P++ +YN LIKGLC             
Sbjct: 130 VTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLL 189

Query: 57  -------------------------KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
                                    K G +  A ++  E+   G  P+ +TY++++    
Sbjct: 190 HMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLC 249

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           + +       IL  M  KG   +   Y  +I  +  +G+L+EA   +++M   G+Q D+V
Sbjct: 250 KAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVV 309

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y  LI  YCK G+   A  + D M ++G + +   + IL+ G    G +   R  L+ M
Sbjct: 310 TYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLM 369

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRL 267
            + G      A+N ++    K G +D A+  F  M       D  +YS+++H LCK  R+
Sbjct: 370 IRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRV 429

Query: 268 PSA 270
             A
Sbjct: 430 EDA 432



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 142/299 (47%), Gaps = 4/299 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T++ +++GLCK +  + A  + + +   G +P   TYNI+I+G C  G+
Sbjct: 229 MIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQ 288

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +LK++  SG  P+ +TY  +++   +  +      +  +M RKG   +   Y  
Sbjct: 289 LEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHI 348

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +   G L +  D ++ M+ DG+  +  ++N LI  Y K G ++ A     EM + G
Sbjct: 349 LLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG 408

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GKDGKID 237
              D  +++ +I  LCK G ++ A  H   M   G   N+ ++  ++  L   G+  K++
Sbjct: 409 LRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVE 468

Query: 238 H-AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             A  +       D+   ++++ NLCK  R+  A       +  GV+    +   ++DG
Sbjct: 469 ELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDG 527



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 150/310 (48%), Gaps = 41/310 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            FNI++    K+   D A+  F  ++++G  P++V+Y+ +I  LCK GR+  A +   ++
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM 439

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN I++T+++       ++K   E+   M  +G   D     T++    K GR+
Sbjct: 440 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRV 499

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH--- 188
            EA D+ + ++  GV+ ++VSYNTLI+ YC  GK++ +    D M   G   D +T+   
Sbjct: 500 VEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNAL 559

Query: 189 --------------------------------TILIDGLCKAGNIKGAR-LHLEYMNKIG 215
                                            I++ GL +AG I  AR L+++ +++ G
Sbjct: 560 LNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDR-G 618

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
               +E YN ++  L ++  +D A+ +FE +  K    D +T++ +++ L K  R+  A 
Sbjct: 619 TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAK 678

Query: 272 KLLLSCLKSG 281
            L  + +  G
Sbjct: 679 SLFSAMVLRG 688



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 108/216 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P + T+N +LNG  KN   ++AL ++R + +       +T NI++ GL +AGR
Sbjct: 544 MVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGR 603

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +  ++ D G      TY T++     N      L +   ++ K +  D + +  
Sbjct: 604 IVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNI 663

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI A +K+GR+ EA      MV  G    +++Y+ +I    +EG LE +  L   MEK G
Sbjct: 664 VINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNG 723

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
              D +   ++I  L + G+++ A  +L  +++  F
Sbjct: 724 CAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNF 759



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 115/247 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P     N +++ LCK      A   F  +   G  P +V+YN LI G C  G+
Sbjct: 474 MINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGK 533

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +      +   G  P++ TY  ++   F+N + +  L +   M RK   F       
Sbjct: 534 MDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNI 593

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + GR+  A +   +MV  G QL I +YNT++   C+   ++ A  + +++  + 
Sbjct: 594 ILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKE 653

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           FE D +T  I+I+ L K G I  A+     M   G   ++  Y+ ++    ++G ++ + 
Sbjct: 654 FELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESD 713

Query: 241 NVFESME 247
           ++F SME
Sbjct: 714 DLFLSME 720



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 8/253 (3%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTA-RWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96
           K G+  + VT N LIKGLC   R   A   + + + + G+ P+  +Y  ++K     +K 
Sbjct: 122 KMGWRVQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKS 181

Query: 97  KLGLEILSAMKRKGY---TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           +  LE+L  M   G    + +   Y T+I  F K G + +A    ++M+  G   D+V+Y
Sbjct: 182 QEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTY 241

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           ++LI+  CK   +  A  +L  M  +G   +  T+ I+I G C  G ++ A   L+ M+ 
Sbjct: 242 SSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSG 301

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPS 269
            G   ++  Y  ++    K G+   A +VF+SM    +  +S  Y  ++H       L  
Sbjct: 302 SGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALID 361

Query: 270 ASKLLLSCLKSGV 282
              LL   ++ G+
Sbjct: 362 VRDLLDLMIRDGI 374



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 98  LGLEILSAMKRKGYTF---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
           L + + + M R G      + +    +I  F  +GRL  A       +  G ++  V+ N
Sbjct: 74  LAVSLFNTMARSGVNMMAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLN 133

Query: 155 TLINLYCKEGKLEAAY-LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
            LI   C   + + A  ++   M + G+  D +++  LI GLC     + A   L +M  
Sbjct: 134 QLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTA 193

Query: 214 IGF---DSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKR 266
            G      N+ +Y+ I+D   K+G++D A  +F+ M       D  TYSS++  LCKA+ 
Sbjct: 194 DGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQA 253

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  A  +L      GV         ++ G    G   EA ++  K+
Sbjct: 254 MNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKM 299


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 142/297 (47%), Gaps = 9/297 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P  + +N  ++ LCK+     A+ + + ++     P++VT+N LI GLCKAGRL  A+
Sbjct: 50  MAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQ 109

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+  SG A N +TY T++       +    + ++  M     T D   Y  +I  F
Sbjct: 110 QVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGF 166

Query: 126 VKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            K G +  A  ++E+M    G   D  +Y+ LIN  CK   L  A  LL EM  +   C 
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226

Query: 185 KYT-HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
                  L+DG CKA ++  AR  L  M + G   ++  Y+ I+D L + G +D    + 
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALL 286

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           E M  +    D  TY+ +V  LCKA ++  A +L+   L+ G          V DGL
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGL 343



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 9/284 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   TFN ++ GLCK    D A ++   +++ GF   LVTYN LI GL  AGR   
Sbjct: 83  GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGE 142

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-RKGYTFDGFGYCTVI 122
           A  +++ +  +   P+  TY  I+    ++ +       L  MK R G + D F Y  +I
Sbjct: 143 AVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILI 199

Query: 123 AAFVKIGRLKEATDYMEQMV-TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
               K   L++A + +++M+        +V++NTL++ YCK   L+ A  LL  M + G 
Sbjct: 200 NGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGC 259

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D  T++ +IDGLC+ G++      LE M   G   ++  Y  +V  L K GK+  A  
Sbjct: 260 APDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACR 319

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           + + M       ++ TYS +   LCK  +L  A+ LL S    G
Sbjct: 320 LVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 151/308 (49%), Gaps = 10/308 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           T+ +++   C       A+ + R + Q+ G  P    YN  +  LCK+G++  A  ++K 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + D    P+ +T+ T++    +  +     ++L  M+R G+  +   Y T+I      GR
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKYTHT 189
             EA   M+ M T     D  +YN +I+ +CK G+++ AY  L+EM ++ G   D +T++
Sbjct: 140 SGEAVLVMQGMTTTP---DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYS 196

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           ILI+GLCK+ N++ A  L  E + +    +++ A+N +VD   K   +D A  +  SM  
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE 256

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                D  TYS+++  LC+   +     LL   +  G +        +V GL  +G   E
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 305 AKKIQSKI 312
           A ++  ++
Sbjct: 317 ACRLVKRM 324



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 2/223 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           TP T T+N +++G CK+   D A      + Q+ G  P+  TY+ILI GLCK+  LR A 
Sbjct: 153 TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKAD 212

Query: 66  WILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +L+E+ G      + + + T++    + +      E+LS+M   G   D   Y T+I  
Sbjct: 213 ELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDG 272

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + G + +    +E+MV+ G + D+V+Y  L+   CK GK+  A  L+  M + G   +
Sbjct: 273 LCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPN 332

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
             T++++ DGLCK   +  A   L  +   G  +++ A+  ++
Sbjct: 333 AVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D       FN +++G CK +  D A  +   + +HG  P++VTY+ +I GLC+ G +   
Sbjct: 223 DCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKG 282

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+++   G  P+ +TYT ++    +  K      ++  M   G T +   Y  V   
Sbjct: 283 FALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDG 342

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             KI +L  A D +  +   G   D+V++ TL+
Sbjct: 343 LCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 66/120 (55%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++GLC+    D    +   +   G  P++VTY +L+ GLCKAG++  A  +
Sbjct: 261 PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRL 320

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +K + + G  PNA+TY+ +     +  K  +  ++L++++ KG   D   + T++ +  K
Sbjct: 321 VKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLSVKK 380



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 37/164 (22%)

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---------------------------- 179
            D  +Y  L+  +C  G+L+AA  LL EME+Q                            
Sbjct: 16  FDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAME 75

Query: 180 --------GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
                     + D  T   LI GLCKAG +  A+  L+ M + GF +NL  YN +++ L 
Sbjct: 76  VVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135

Query: 232 KDGKIDHAINVFESM-EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
             G+   A+ V + M    D+ TY++++H  CK+  +  A   L
Sbjct: 136 SAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFL 179


>gi|297808491|ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317966|gb|EFH48388.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 588

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 135/272 (49%), Gaps = 8/272 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTAR 65
           +P   ++N ++ GLC     D AL +F  L K+G  P  VT NI++  LC+ G +     
Sbjct: 186 SPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGVIGNNNT 245

Query: 66  WILKELGDSG--HAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +L+E+ DS   +AP + +T T +M  CF+N      LE+   M +K    D   Y  +I
Sbjct: 246 KLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVVYNVII 305

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
                 G +  A  +M  MV  GV  D+ +YNTLI+  CK GK + A  L   M+  G  
Sbjct: 306 RGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVGVA 365

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D+ ++ ++I GLC  G++  A   L+ M K      +  +N ++D  G+ G    A++V
Sbjct: 366 PDQISYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGDTSCALSV 425

Query: 243 FESM---EVKDS-FTYSSMVHNLCKAKRLPSA 270
              M    VK + +T ++++H   K  RL  A
Sbjct: 426 LNLMLSYGVKPNVYTNNALIHGYVKGGRLIDA 457



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++  LC     D AL +   + + GF+P L+ +N L+ GLCK G +  A  +++E+ + G
Sbjct: 125 IMRDLCLQGKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVREMREMG 184

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            +PN ++Y T++K           L + S + + G   +      ++ A  + G +    
Sbjct: 185 PSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGVIGNNN 244

Query: 136 DYMEQMVTDGVQ----LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             + + + D  Q    LDIV+   L++   K G +  A  +  EM ++    D   + ++
Sbjct: 245 TKLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVVYNVI 304

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I GLC +GN+  A   +  M K G + ++  YN ++  L K GK D A ++  +M+    
Sbjct: 305 IRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVGV 364

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             D  +Y  ++  LC    +  A++ L S LK  +         V+DG
Sbjct: 365 APDQISYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDG 412



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 125/282 (44%), Gaps = 8/282 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+  CT    I+++   KN     AL +++ + +     + V YN++I+GLC +G +  A
Sbjct: 262 DIVTCT----ILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVVYNVIIRGLCSSGNMVAA 317

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
              + ++   G  P+  TY T++    +  K+ +  ++   M+  G   D   Y  +I  
Sbjct: 318 YGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVGVAPDQISYKVIIQG 377

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G +  A ++++ M+   +  +++ +N +I+ Y + G    A  +L+ M   G + +
Sbjct: 378 LCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGDTSCALSVLNLMLSYGVKPN 437

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT+  LI G  K G +  A      M       +   YN +V      G +  A  +++
Sbjct: 438 VYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLVGAACTLGHLRLAFQLYD 497

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            M  +    D  TY+ +V  LC   RL  A  LL     SG+
Sbjct: 498 EMLKRGCQPDIITYTELVRGLCWKGRLKEAESLLSRMQVSGI 539



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 113/248 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++ LCK    D A  +   +Q  G  P+ ++Y ++I+GLC  G 
Sbjct: 324 MVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVGVAPDQISYKVIIQGLCIQGD 383

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L+ +      P  + +  ++    R       L +L+ M   G   + +    
Sbjct: 384 VDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGDTSCALSVLNLMLSYGVKPNVYTNNA 443

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +VK GRL +A     +M +  +  D  +YN L+   C  G L  A+ L DEM K+G
Sbjct: 444 LIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLVGAACTLGHLRLAFQLYDEMLKRG 503

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T+T L+ GLC  G +K A   L  M   G   +   +  +V +  +  + D A 
Sbjct: 504 CQPDIITYTELVRGLCWKGRLKEAESLLSRMQVSGITMDHVPFLILVKKYTRLQRPDEAY 563

Query: 241 NVFESMEV 248
            V++   V
Sbjct: 564 LVYKKWLV 571



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 4/115 (3%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +++++   C +GK++AA  L ++M + GF      H  L++GLCK G I+ A   +  M 
Sbjct: 122 HSSIMRDLCLQGKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVREMR 181

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           ++G   N  +YN ++  L     +D A+ +F ++       +  T + +VH LC+
Sbjct: 182 EMGPSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQ 236


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 126/256 (49%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 156 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 215

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    ++ +  L +EI   M  +  + D   Y T+I   
Sbjct: 216 ELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 275

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M ++    D 
Sbjct: 276 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDD 335

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M   G   +   Y  I++   K G +     + + 
Sbjct: 336 VAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKE 395

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 396 MQ-RDGHVPSVVTYNV 410



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 138/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N L+ G  + G L     +   + 
Sbjct: 128 FNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 187

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVD 247

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 248 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 307

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           DG CK G+++ A  H + M +     +  AY  ++  L ++G+   A  V   M      
Sbjct: 308 DGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLK 367

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   + + SKLL    + G
Sbjct: 368 PDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 400



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK+GR+  A 
Sbjct: 191 VQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAM 250

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I K++     +P+ ITY T++    +    K   +++  M  KG   D   Y T+I   
Sbjct: 251 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGC 310

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L+ A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G + D 
Sbjct: 311 CKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDT 370

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
            T+T++I+  CK G++      L+ M + G   ++  YN +++
Sbjct: 371 GTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMN 413



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 102/194 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CK+   D A+ +++ +      P+L+TYN LI GLCK G 
Sbjct: 221 MLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 280

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+ ITYTT++  C +    +   E    M ++    D   Y  
Sbjct: 281 LKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTA 340

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+G +     LL EM++ G
Sbjct: 341 LISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 400

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 401 HVPSVVTYNVLMNG 414



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 133/273 (48%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  + K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 96  VLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWG 155

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 156 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 215

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 216 ELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 275

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G ++ A       + E++ + D
Sbjct: 276 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRL-D 334

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L +G++
Sbjct: 335 DVAYTALISGLCQEGRYLDAEKVLREMLSAGLK 367


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 15/293 (5%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA------ 58
           ++ P T T++ M++G CK+   ++A  MF  +   G  P+++T N LI G C+A      
Sbjct: 180 NIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIH 239

Query: 59  -----GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
                G +  A+ + +E+  +G +P+ +T  T++     N K +  LE+    ++     
Sbjct: 240 GFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDL 299

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D      +I    K  ++ EA D    +  +GV+ D+V+YN LI ++ KEG    A  + 
Sbjct: 300 DTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIY 359

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            EM  +G      T+  ++DG CK   ++ AR  ++ M   G   ++  ++ ++    K 
Sbjct: 360 LEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKA 419

Query: 234 GKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           G++D  + +F  M     V D+ TY++++H  CK   L  A  +    + SGV
Sbjct: 420 GRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGV 472



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 28/285 (9%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TF+ ++N   K      A  ++R + +    P  +TY+ +I G CK  R
Sbjct: 141 MIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSR 200

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ +   +   G +P+ IT  T++  C R +++                        
Sbjct: 201 LEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRH------------------------ 236

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F ++G +  A D  ++M+++GV  DIV+ NTL+   C+ GKLE A  +    +K  
Sbjct: 237 LIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSK 296

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T  I+I+G+CK   +  A      +   G ++++  YN ++    K+G    A 
Sbjct: 297 MDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAE 356

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +++  M  K     + TY+SMV   CK  RL  A +++ S +  G
Sbjct: 357 DIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEG 401



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 121/247 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T N +L GLC+N   + AL MF+  QK     +  T NI+I G+CK  +
Sbjct: 257 MISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNK 316

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   L  +G   + +TY  ++    +   +    +I   M  KG       Y +
Sbjct: 317 VDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNS 376

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F K  RL+EA   ++ MV++G   D+V+++TLI  YCK G+++    L  EM ++G
Sbjct: 377 MVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRG 436

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LI G CK G++ GA+   E M   G   +   +  ++  L    ++   +
Sbjct: 437 LVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGL 496

Query: 241 NVFESME 247
            + E ++
Sbjct: 497 TMLEDLQ 503



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 1/212 (0%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           TAT NI++NG+CK    D A  +F  L  +G   ++VTYNILI    K G    A  I  
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYL 360

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G  P+ +TY +++    +  + +   +++ +M  +G + D   + T+I  + K G
Sbjct: 361 EMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAG 420

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+ +  +   +M   G+  D ++YN LI+ +CK G L  A  + +EM   G   D  T  
Sbjct: 421 RVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFR 480

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
            ++ GLC    ++     LE + K   D  LE
Sbjct: 481 SMLAGLCTKAELQKGLTMLEDLQK-SVDHELE 511



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 143/308 (46%), Gaps = 18/308 (5%)

Query: 7   TPCTA---TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           T C A   TF  ++NGLC+      AL +   + + G  P+ VTY  ++ G+CK G   +
Sbjct: 4   TGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVS 63

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+++ +S    N + Y+ I+    ++  +     I + M  KG   +   Y  +I 
Sbjct: 64  ALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMID 123

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            +   G+  +A   +  M+   +  D+V+++ LIN + KEGK+  A  L  EM ++    
Sbjct: 124 GYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFP 183

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD-----------RLGK 232
              T++ +IDG CK   ++ A+   + M   G   ++   N ++D              +
Sbjct: 184 TTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQ 243

Query: 233 DGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
            G ++ A ++F+ M       D  T ++++  LC+  +L  A ++     KS + +  + 
Sbjct: 244 VGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTAT 303

Query: 289 QKAVVDGL 296
              +++G+
Sbjct: 304 CNIIINGM 311



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 99/206 (48%), Gaps = 4/206 (1%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           ++G   N +T+TT+M    R  +    L ++  M  +G+  D   Y T++    K+G   
Sbjct: 3   ETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTV 62

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A + + +M    ++ ++V Y+ +++  CK+G    A  +  EM ++G   +  T+  +I
Sbjct: 63  SALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMI 122

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
           DG C  G    A   L  M +   D ++  ++ +++   K+GK+  A  ++  M  ++ F
Sbjct: 123 DGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIF 182

Query: 253 ----TYSSMVHNLCKAKRLPSASKLL 274
               TYSSM+   CK  RL  A  + 
Sbjct: 183 PTTITYSSMIDGFCKHSRLEDAKHMF 208



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           MV  G   ++V++ TL+N  C+EG++  A  L+D M ++G + D  T+  +++G+CK G+
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSS 256
              A   L  M++    +N+  Y+ IVDRL KDG    A N+F  M  K  F    TY+ 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 257 MVHNLCKAKRLPSASKLL 274
           M+   C   +   A +LL
Sbjct: 121 MIDGYCSYGKWSDAEQLL 138



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M   G   +   + T++    + GR+ +A   +++MV +G Q D V+Y T++N  CK G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYN 224
             +A  +L +M++   + +   ++ ++D LCK GN IK   +  E M++ G   N+  YN
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTE-MHEKGIFPNVLTYN 119

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
           C++D     GK   A  +   M  +    D  T+S++++   K  ++  A +L    L+ 
Sbjct: 120 CMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRR 179

Query: 281 GVRILKSAQKAVVDGL-RHS 299
            +        +++DG  +HS
Sbjct: 180 NIFPTTITYSSMIDGFCKHS 199



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+    +P   TF+ ++ G CK    D+ L +F  + + G V + +TYN LI G CK G 
Sbjct: 397 MVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGD 456

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           L  A+ I +E+  SG  P+ IT+ +++       + + GL +L  +++ 
Sbjct: 457 LNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQKS 505


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 43/316 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
             L P   T NIM++ LCK R  + A ++F    + G  P+ VTY  LI GL K G++  
Sbjct: 417 ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDE 476

Query: 64  ARWILKELGDSGHAPNAITYT-----------------------------------TIMK 88
           A  + +++ D+GH  N + YT                                   T M 
Sbjct: 477 AYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMD 536

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           C F+  + + G  I   ++  G+  D   Y  +I    K G+ +E ++    M   G  L
Sbjct: 537 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL 596

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D  +YN +++ +CK GK+  AY +L+EM+++  +    T+  ++DGL K   +  A +  
Sbjct: 597 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLF 656

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           E     G + N+  Y+ ++D  GK G+ID A  + E M  K    + +T++S++  L KA
Sbjct: 657 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKA 716

Query: 265 KRLPSASKLLLSCLKS 280
           + +  A    L C +S
Sbjct: 717 EEINEA----LVCFQS 728



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 155/317 (48%), Gaps = 5/317 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++I+++GL K         +F  +++ GF  +   YN ++ G CK+G++  A  I
Sbjct: 561 PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 620

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+ +    P   TY  I+    +  +      +    K KG   +   Y ++I  F K
Sbjct: 621 LEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 680

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+ EA   +E+M+  G+  ++ ++N+L++   K  ++  A +    M++     + YT
Sbjct: 681 VGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYT 740

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILI+GLC+      A +  + M K G   N+  Y  ++  L K G I  A ++FE  +
Sbjct: 741 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 800

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D+ ++++++  +  A R   A ++       G RI   +  +++D L  S C  
Sbjct: 801 ANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDALNKSECLE 860

Query: 304 EAKKIQSKIR-MAKISH 319
           +A  + + +R +AK  H
Sbjct: 861 QAAIVGAVLREIAKSQH 877



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 4/305 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P ++T+NI+++ LC     + A R+   ++     P L+T NI++  LCKA +L  A
Sbjct: 383 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 442

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             I +     G  P+ +TY +++    +  +      +   M   G+  +   Y ++I  
Sbjct: 443 YKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRN 502

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   GR ++     ++++  G + D+   NT ++   K G++E   ++ +++   GF  D
Sbjct: 503 FFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPD 562

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +++ILI GL KAG  +        M + GF  +  AYN +VD   K GK+  A  + E
Sbjct: 563 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 622

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+ K       TY ++V  L K  RL  A  L       G+ +      +++DG    G
Sbjct: 623 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 682

Query: 301 CRREA 305
              EA
Sbjct: 683 RIDEA 687



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 131/240 (54%), Gaps = 4/240 (1%)

Query: 31  RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
           ++F+ L + G  P+L   N  +  + KAG +   R I +++   G  P+  +Y+ ++   
Sbjct: 514 KIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGL 573

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +  + +    I  AMK++G+  D   Y  V+  F K G++ +A + +E+M    VQ  +
Sbjct: 574 TKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTV 633

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +Y  +++   K  +L+ AY+L +E + +G E +   ++ LIDG  K G I  A L LE 
Sbjct: 634 ATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEE 693

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-EVK---DSFTYSSMVHNLCKAKR 266
           M K G   N+  +N ++D L K  +I+ A+  F+SM E+K   +++TYS +++ LC+ ++
Sbjct: 694 MMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQK 753



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 5/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N+ ++   K    D A + F  L+  G  P+ V+Y  +I  LCKAGRL  A 
Sbjct: 245 LEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAE 304

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P A  Y T++       +++   ++L  ++ +G       + +++   
Sbjct: 305 ELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL 364

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA    E M  D  + +  +YN +I++ C  G++E AY +LDEME      + 
Sbjct: 365 GKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNL 423

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  I++D LCKA  ++ A    E  ++ G + +   Y  ++D LGK G++D A  +FE 
Sbjct: 424 LTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEK 483

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           M       +   Y+S++ N     R     K+    ++ G
Sbjct: 484 MLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 523



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 140/309 (45%), Gaps = 5/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  + + +++  L + R  + AL + R +Q+ G+   +  +  L++ L + G++  A  +
Sbjct: 177 PAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALAL 236

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+  S   P+ + Y   + C  +     +  +    +K +G   D   Y ++I    K
Sbjct: 237 VDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCK 296

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL EA +   QM  +       +YNT+I  Y   G+ E AY LL+ + ++G      +
Sbjct: 297 AGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS 356

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              ++  L K   +  A    E M K   + N   YN I+D L   G+++ A  + + ME
Sbjct: 357 FNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEME 415

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               F    T + MV  LCKA++L  A K+  S  + G         +++DGL   G   
Sbjct: 416 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 475

Query: 304 EAKKIQSKI 312
           EA ++  K+
Sbjct: 476 EAYRLFEKM 484



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 125/259 (48%), Gaps = 3/259 (1%)

Query: 19  GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
            L + R  D+A+     +++  F P    Y +LI  L +A R   A  +L+++ + G+  
Sbjct: 153 ALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEV 212

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
               +TT+++   R  +    L ++  +K      D   Y   I  F K G +  A  + 
Sbjct: 213 GVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFF 272

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
            ++   G++ D VSY ++I + CK G+L  A  L  +ME +      Y +  +I G   A
Sbjct: 273 HELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSA 332

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYS 255
           G  + A   LE + + G   ++ ++N I+  LGK  K+D A+++FE M+     +S TY+
Sbjct: 333 GRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYN 392

Query: 256 SMVHNLCKAKRLPSASKLL 274
            ++  LC   R+  A ++L
Sbjct: 393 IIIDMLCLGGRVEEAYRIL 411



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   T+N +L+ L K    + AL  F+ +++    P   TY+ILI GLC+  +   A 
Sbjct: 699 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 758

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +++   G  PN +TYTT++    +         +    K  G   D   +  +I   
Sbjct: 759 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 818

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
               R  EA    E+    G +++I S  +L++   K   LE A ++
Sbjct: 819 SNANRAMEAYQVFEETRLRGCRINIKSCISLLDALNKSECLEQAAIV 865


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 159/327 (48%), Gaps = 15/327 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP T TFNI++ G C N   D     F+ + +    P++VTYN L+ GLC+AG+++ A 
Sbjct: 232 VTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAH 291

Query: 66  WILKEL--GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            ++K +       +PN +TYTT+++     +     L +L+ M  +G   +   Y T+I 
Sbjct: 292 NVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQ 351

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
              +  +L +  + +E MV DG  + D  + NTLI  +C  GKLE A+ + ++M +   +
Sbjct: 352 GLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQ 411

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLE-------YMNKIGFDSNLEAYNCIVDRLGKDGK 235
            D  T+++L+  LC+ G+ + A    +        ++ +G    + AYN + + L  +GK
Sbjct: 412 PDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGK 471

Query: 236 IDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
              A  VF  +     +D  +Y +++   C+     +   LL+  L+            +
Sbjct: 472 TKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLM 531

Query: 293 VDGLRHSGCRREAKKIQSKIRMAKISH 319
           +DGL   G    A K  S  +M K SH
Sbjct: 532 IDGLLKKGDPVLAHK--SLEKMLKSSH 556



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 9/242 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+   L P   T+N ++ GLC+ +  D    +  G+   G F+P+  T N LIK  C  G
Sbjct: 334 MVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMG 393

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  + +++ +    P++ TY+ +++   +   ++   E    +  K       G  
Sbjct: 394 KLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCK 453

Query: 120 TVIAAFVKI-------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
            ++AA+  +       G+ K+A     Q++  G Q D  SY TLI  +C+EG  EA + L
Sbjct: 454 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDL 512

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           L  M ++ F  D  T+ ++IDGL K G+   A   LE M K         ++ I+  L +
Sbjct: 513 LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVE 572

Query: 233 DG 234
            G
Sbjct: 573 KG 574



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 9/268 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L+P   T+  ++ G C  +    AL +   +   G  P  +TYN LI+GLC+A +L   
Sbjct: 303 NLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKI 362

Query: 65  RWILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           + IL+ + GD G  P+  T  T++K      K +    +   M       D   Y  ++ 
Sbjct: 363 KEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVR 422

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLD-------IVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +  + G  + A ++ +++    + L        + +YN +    C  GK + A  +  ++
Sbjct: 423 SLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQL 482

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
            K+G + D  ++  LI G C+ G  +     L  M +  F  + E Y  ++D L K G  
Sbjct: 483 MKRGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDP 541

Query: 237 DHAINVFESMEVKDSFTYSSMVHNLCKA 264
             A    E M        +++ H++  A
Sbjct: 542 VLAHKSLEKMLKSSHLPTTAIFHSILAA 569



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 124/301 (41%), Gaps = 42/301 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            +L P  +   + L  L   R    AL  FR ++  GF     +Y ++I+ L ++  L  
Sbjct: 87  AELAPSLSKTTV-LQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNA 145

Query: 64  AR-WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           AR ++      SG A                   KLG    +++ R       +G+    
Sbjct: 146 ARNFVFSIEKKSGGA------------------VKLGDRFFNSLIR------SYGWA--- 178

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGF 181
                 G  +E+    + M   GV   +V++N+L+++  K G+   A  L DEM +  G 
Sbjct: 179 ------GLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGV 232

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D YT  ILI G C    +       + M++   D ++  YN +VD L + GK+  A N
Sbjct: 233 TPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHN 292

Query: 242 VFESMEVKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           V + M  K         TY++++   C  + +  A  LL   +  G++  K     ++ G
Sbjct: 293 VVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQG 352

Query: 296 L 296
           L
Sbjct: 353 L 353


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 151/316 (47%), Gaps = 8/316 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFN ++ G C+    D A  +F  +   GF  ++V+Y  LI+GLC+AGR
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+      P+   Y  ++K      + + GL +L  MK  G+      Y  
Sbjct: 61  IDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+    +  + KEA + +++M   G+   +V+   +IN YCKEG++  A  +L+ M+ +G
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 176

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + + +T+  L+ G C  G +  A   L  M   G + +   YN ++     DG I+ A 
Sbjct: 177 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAF 236

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME    + D +TY+++++ LCK  R   A  L  S    G++       ++++GL
Sbjct: 237 RLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 296

Query: 297 RHSGCRREAKKIQSKI 312
             SG    A K   K+
Sbjct: 297 CKSGKADIAWKFLEKM 312



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 4/262 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +  ++ GLC     +  L M R +++ G+ P    Y  ++   C+  + + A  +
Sbjct: 74  PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEM 133

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+ + G AP  +T T ++    +  +    L +L  MK +G   + + Y  ++  F  
Sbjct: 134 LQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCN 193

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ +A   + +M   GV  D V+YN LI   C +G +E+A+ LL  ME  G   D+YT
Sbjct: 194 EGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYT 253

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+ LCK G    A    + +   G   N   +N +++ L K GK D A    E M 
Sbjct: 254 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMV 313

Query: 248 ----VKDSFTYSSMVHNLCKAK 265
                 D++TYSS + +LCK K
Sbjct: 314 SAGCTPDTYTYSSFIEHLCKMK 335



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 150/354 (42%), Gaps = 58/354 (16%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++N LCK+  TD A  +F  L+  G  P  VT+N LI GLCK+G+   A   L+++
Sbjct: 253 TYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKM 312

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  P+  TY++ ++   + +  + GL  +  M +K        Y  VI   +K    
Sbjct: 313 VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNY 372

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
                   +MV+ G   D+V+Y T +  YC EG+L  A  +L EM K G   D   +  L
Sbjct: 373 GLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTL 432

Query: 192 IDG-----------------------------------------------LCKAGNIKGA 204
           +DG                                               L  AG  K  
Sbjct: 433 MDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI 492

Query: 205 RLH-----LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT-----Y 254
            L       + M K  F  N   Y+ I++   +DG+ + A ++   M+ +DS +     Y
Sbjct: 493 ELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMK-EDSISLNEDIY 551

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +++V   CK+KR   A  L+ S ++ G      + + ++ GL   G   +AK+I
Sbjct: 552 TALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEI 605



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 5/267 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG + P   T+N+++ G C + + ++A R+ R ++  G + +  TYN LI  LCK GR  
Sbjct: 210 CG-VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTD 268

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +   L   G  PNA+T+ +++    ++ K  +  + L  M   G T D + Y + I
Sbjct: 269 QACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI 328

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K+   +E   ++ +M+   V+   V+Y  +I+   KE           EM   G  
Sbjct: 329 EHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCN 388

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+T  +   C  G +  A   L  M+K G   +  AYN ++D     G+ DHA+++
Sbjct: 389 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSI 448

Query: 243 FESM----EVKDSFTYSSMVHNLCKAK 265
            + M     V + FTY  ++ +L + +
Sbjct: 449 LKQMTSVASVPNQFTYFILLRHLVRMR 475



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 4/262 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  +  +++  C+ R    A  M + + + G  P +VT   +I   CK GR+  A  +
Sbjct: 109 PSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 168

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +   G  PN  TY  +++      K    + +L+ M+  G   D   Y  +I     
Sbjct: 169 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCI 228

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A   +  M  DG+  D  +YN LIN  CK+G+ + A  L D +E +G + +  T
Sbjct: 229 DGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVT 288

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LI+GLCK+G    A   LE M   G   +   Y+  ++ L K       ++    M 
Sbjct: 289 FNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML 348

Query: 248 VKD----SFTYSSMVHNLCKAK 265
            KD    +  Y+ ++H L K +
Sbjct: 349 QKDVKPSTVNYTIVIHKLLKER 370



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 114/267 (42%), Gaps = 17/267 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P T  + I+++ L K R      R +  +   G  P++VTY   ++  C  GR
Sbjct: 347 MLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGR 406

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L E+  +G   + + Y T+M       +    + IL  M       + F Y  
Sbjct: 407 LNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFI 466

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-----------------SYNTLINLYCKE 163
           ++   V++  +++        V   ++L  V                 +Y++++  + ++
Sbjct: 467 LLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSED 526

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
           G+ E A  L+  M++     ++  +T L+   CK+     A + +  M + GF   L +Y
Sbjct: 527 GRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSY 586

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVKD 250
             ++  L  +G+ D A  +F +   KD
Sbjct: 587 QHLLSGLICEGQTDKAKEIFMNSRWKD 613



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 99/267 (37%), Gaps = 55/267 (20%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+   +   C     + A  +   + K+G   + + YN L+ G    G+
Sbjct: 382 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 441

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA--------------- 105
              A  ILK++      PN  TY  +++   R R  +  L +  A               
Sbjct: 442 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLF 501

Query: 106 --MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
             MK+  +  +   Y +++  F + GR +EAT  +  M  D + L+   Y  L+  +CK 
Sbjct: 502 DVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKS 561

Query: 164 GKLEAAYLLLDEMEKQGF-----------------------------------ECDKYTH 188
            +   A++L+  M + GF                                     D+   
Sbjct: 562 KRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVW 621

Query: 189 TILIDGLCKAGNIKGAR---LHLEYMN 212
            ++IDGL K G+   +R   + LE MN
Sbjct: 622 KVIIDGLIKKGHSDISREMIIMLERMN 648


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 152/324 (46%), Gaps = 19/324 (5%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+ + L+GLCK    D A   F  LQ  GF   L+ Y+ LI GL +AGR      
Sbjct: 281 PPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLS 340

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              E+     +P+   YT +++      + K    +L  MK KG+  D F Y T++ A  
Sbjct: 341 YYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALF 400

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            +G +  A   M +M+ + V LD  ++N +I   CK+G ++ A  + DEM + G      
Sbjct: 401 DVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVM 460

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL--------------EAYNCIVDRLGK 232
           T+  LIDGL +AG ++ AR+    M ++G + +L              E+   +VD + +
Sbjct: 461 TYNALIDGLYRAGMLEEARMLFHKM-EMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQ 519

Query: 233 DGKIDHAI----NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
            G++  A      + ES  V D  TY+++++ LCKAK L  A +L       G+   +  
Sbjct: 520 SGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEIT 579

Query: 289 QKAVVDGLRHSGCRREAKKIQSKI 312
              ++DGL  +    +A  +   I
Sbjct: 580 YGTLIDGLWRAHRENDATMLFQNI 603



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 154/328 (46%), Gaps = 23/328 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    + ++L+ LC     ++A R+   ++++G  P+ VTY + + GLCKAGR+  A 
Sbjct: 245 IVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAF 304

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              + L D G     I Y+ ++   F+  ++  GL   + M  K  + D   Y  +I  F
Sbjct: 305 HRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRF 364

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GR K+A   +++M   G   D   YNTL+      G ++ A  L+ EM +     D 
Sbjct: 365 AEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDS 424

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            TH I+I GLCK G I  A    + M + G    +  YN ++D L + G ++ A  +F  
Sbjct: 425 TTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHK 484

Query: 246 ME-----------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
           ME                 V+D+ +   +V  +C++ ++  A KLL   ++SGV      
Sbjct: 485 MEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVT 544

Query: 289 QKAVVDGLRHSGCRREAKKIQSKIRMAK 316
              +++GL    C+  AK +   +R+ K
Sbjct: 545 YNTLINGL----CK--AKNLDGALRLFK 566



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 134/314 (42%), Gaps = 4/314 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P    +N +   L        AL ++  +   G +P   TY +L+ GLCK G    A
Sbjct: 174 DCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDA 233

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  E+ + G  P+   YT ++       + +    +L +MK  G   D   Y   ++ 
Sbjct: 234 LKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSG 293

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR+ EA    E +   G  L ++ Y+ LI+   + G+ +       EM  +    D
Sbjct: 294 LCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPD 353

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              +TILI    +AG  K A L L+ M   GF  +   YN ++  L   G ID A ++  
Sbjct: 354 ITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMS 413

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M     V DS T++ M+  LCK   +  A ++     + G         A++DGL  +G
Sbjct: 414 EMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAG 473

Query: 301 CRREAKKIQSKIRM 314
              EA+ +  K+ M
Sbjct: 474 MLEEARMLFHKMEM 487



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 22/234 (9%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           + T NIM+ GLCK    D A+++F  + +HG  P ++TYN LI GL +AG L  AR +  
Sbjct: 424 STTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFH 483

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++ + G+ P+     T+     R+ +         ++++            ++    + G
Sbjct: 484 KM-EMGNNPSLFLRLTLGANQVRDTE---------SLRK------------LVDGMCQSG 521

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++ +A   +  ++  GV  D+V+YNTLIN  CK   L+ A  L  E++ +G   D+ T+ 
Sbjct: 522 QVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYG 581

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
            LIDGL +A     A +  + + + G   +L  YN ++  L +  K+  AIN++
Sbjct: 582 TLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLW 635



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 24/297 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRY----------------TDNALRMFRGL---QKHGF 41
           +IC DL P  +   + L    K R                   +A+ MF  L   +  G 
Sbjct: 82  LICADL-PAASRIRLFLYSAIKRRLRSPLLYSRAVSVLLASEPDAVAMFDALADARAAGL 140

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
                 +  L+     AGR + A      +GD    P A  Y  + +         L L 
Sbjct: 141 PAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALA 200

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           + + M   G   +   Y  ++    K G   +A    ++M+  G+  D+  Y  L++  C
Sbjct: 201 LYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLC 260

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
            EG++E A  LL  M++ G   D+ T+T+ + GLCKAG +  A    E +   GF   L 
Sbjct: 261 NEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLI 320

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            Y+C++D L + G+ D  ++ +  M  K    D   Y+ ++    +A R   A  LL
Sbjct: 321 GYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLL 377



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGLCK +  D ALR+F+ LQ  G  P+ +TY  LI GL +A R   A 
Sbjct: 538 VVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDAT 597

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + +  SG  P+   Y T+M+   R +K    + +      K Y         VIA  
Sbjct: 598 MLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNLSPED--EVIAN- 654

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINLYCKEGKLEAAYLLLDEMEK 178
               R      ++++ V + +++D V        Y   +   C+  K++ A  +   +E+
Sbjct: 655 ---ARKCFEDGFLDETVKELIKIDQVYGSLNPNPYTIWVIGLCQVRKIDDALRIFHILEE 711

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGA 204
            G         +LI+ LC   N+  A
Sbjct: 712 FGIVVTPACCALLINYLCWDRNLNAA 737


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 143/308 (46%), Gaps = 9/308 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG 59
           M+     P   T   +++GLCK  +T+ A R+F  L +   + P + TY  +I G CK  
Sbjct: 313 MVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKED 372

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +   + + G  PN  TYTT++    +   +    E+++ M  +G+  + + Y 
Sbjct: 373 KLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYN 432

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
             I +  K  R  EA + + +  + G++ D V+Y  LI   CK+  +  A      M K 
Sbjct: 433 AAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKT 492

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           GFE D   + ILI   C+   +K +    + +  +G     E Y  ++    K+G ID A
Sbjct: 493 GFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLA 552

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +  F +M+    V DSFTY S++  LCK   +  A KL  + +  G+    S  +     
Sbjct: 553 LKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGL----SPPEVTRVT 608

Query: 296 LRHSGCRR 303
           L +  C+R
Sbjct: 609 LAYEYCKR 616



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 140/276 (50%), Gaps = 5/276 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+L         ML    +    + A+ M   +Q  G  P  +T N +++   + G +  
Sbjct: 141 GNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEY 200

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +  E+   G  P++ +Y  ++  CFR+ K +     L+ M ++G+  D      ++ 
Sbjct: 201 AENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILT 260

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  + G +  A  Y  +M+  G + +++++ +LI+  CK+G ++ A+ +L+EM + G++ 
Sbjct: 261 ALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKP 320

Query: 184 DKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           + YTHT LIDGLCK G  + A RL L+ +    +  N+  Y  ++    K+ K++ A  +
Sbjct: 321 NVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEML 380

Query: 243 FESMEVKDSF----TYSSMVHNLCKAKRLPSASKLL 274
           F  M+ +  F    TY+++++  CKA     A +L+
Sbjct: 381 FSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELM 416



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 32/221 (14%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I++   CK    + AL  F  + K GF  ++   NILI   C+  +++ +  + + 
Sbjct: 464 VTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQL 523

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P   TYT+++ C  +     L L+    MKR G   D F Y ++I+   K   
Sbjct: 524 VVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSM 583

Query: 131 LKEATDYMEQMVTDGV--------------------------------QLDIVSYNTLIN 158
           + EA    E M+  G+                                +L I +  TL+ 
Sbjct: 584 VDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTVRTLVR 643

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
             C E K+  A L   ++ ++    D+ T         ++G
Sbjct: 644 KLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESG 684



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 4/192 (2%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F +IGRL EA   +  M   G+    ++ N ++ +  + G +E A  + DEM  +G   D
Sbjct: 157 FSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPD 216

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++ +++ G  + G I+ A   L  M + GF  +      I+  L ++G ++ AI  F 
Sbjct: 217 SSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFR 276

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       +   ++S++  LCK   +  A ++L   +++G +       A++DGL   G
Sbjct: 277 KMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRG 336

Query: 301 CRREAKKIQSKI 312
              +A ++  K+
Sbjct: 337 WTEKAFRLFLKL 348



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  M++  CK    D AL+ F  +++HG VP+  TY  LI GLCK   +  A 
Sbjct: 529 LIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEAC 588

Query: 66  WILKELGDSGHAPNAITYTTIM-KCCFRN 93
            + + + D G +P  +T  T+  + C RN
Sbjct: 589 KLYEAMIDRGLSPPEVTRVTLAYEYCKRN 617


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 140/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++N  C+    + A  +   +   G  P + TYN +I GLCK G+   A+ +
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G +P+  TY  ++  C RN        I   M  +G   D   +  +I    K
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 510

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L +A  Y   M   G+  D V Y  LI  +C+ G +  A  + DEM +QG   D  T
Sbjct: 511 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVT 570

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +++GLCK   +  A      M + G   +   +  +++   KDG ++ A+ +FE M 
Sbjct: 571 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMI 630

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++   CK   +   ++L    +   +     +   +++G  + GC  
Sbjct: 631 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 690

Query: 304 EAKKIQSKI 312
           EA ++  ++
Sbjct: 691 EAFRLWDEM 699



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 148/311 (47%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + I++ G C+N     AL++   + + G   ++VTYN ++ GLCK   L  A 
Sbjct: 529 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEAD 588

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  P+  T+TT++    ++      + +   M ++    D   Y T+I  F
Sbjct: 589 ELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 648

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   +++  +    M++  +  + +SY  LIN YC  G +  A+ L DEM ++GFE   
Sbjct: 649 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI 708

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   ++ G C+AGN   A   L  M   G   +   YN +++   K+  +D A  +   
Sbjct: 709 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 768

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME    + D  TY+ +++   +  R+  A  ++L  ++ GV   +S   ++++G      
Sbjct: 769 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNN 828

Query: 302 RREAKKIQSKI 312
            +EA ++  ++
Sbjct: 829 LKEAFRVHDEM 839



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 143/316 (45%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L PC  T+N ++NGLCK      A  +   + K G  P+  TYNIL+   C+   +  A 
Sbjct: 424 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 483

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+   G  P+ ++++ ++    +N      L+    MK  G   D   Y  +I  F
Sbjct: 484 RIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 543

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA    ++M+  G  LD+V+YNT++N  CKE  L  A  L  EM ++G   D 
Sbjct: 544 CRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 603

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT T LI+G  K GN+  A    E M +     ++  YN ++D   K  +++    ++  
Sbjct: 604 YTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWND 663

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    +  +Y  +++  C    +  A +L    ++ G          +V G   +G 
Sbjct: 664 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 723

Query: 302 RREAKKIQSKIRMAKI 317
             +A +  S + +  I
Sbjct: 724 AVKADEFLSNMLLKGI 739



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 4/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F++++    + R        FR L+  G    +   N L+ GL K G +  A  I +E+ 
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG   N  T   ++    +N+K +     LS M+ KG   D   Y T+I A+ + G L+
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 410

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA + M+ M   G++  + +YN +IN  CK GK   A  +LDEM K G   D  T+ IL+
Sbjct: 411 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 470

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
              C+  N+  A    + M   G   +L +++ ++  L K+G +D A+  F  M+     
Sbjct: 471 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 530

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D+  Y+ ++   C+   +  A K+    L+ G  +       +++GL       EA ++
Sbjct: 531 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADEL 590

Query: 309 QSKI 312
            +++
Sbjct: 591 FTEM 594



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 2/217 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +L P   T+N +++G CK    +    ++  +      P  ++Y ILI G C  G 
Sbjct: 629 MIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGC 688

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ + G     IT  TI+K   R        E LS M  KG   DG  Y T
Sbjct: 689 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 748

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F+K   +  A   + +M   G+  D+++YN ++N + ++G+++ A L++ +M ++G
Sbjct: 749 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 808

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGF 216
              D+ T+T LI+G     N+K A R+H E + + GF
Sbjct: 809 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR-GF 844



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 91/184 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   ++ I++NG C       A R++  + + GF   ++T N ++KG C+AG 
Sbjct: 664 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 723

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A   L  +   G  P+ ITY T++    +         +++ M+  G   D   Y  
Sbjct: 724 AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNV 783

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + GR++EA   M +M+  GV  D  +Y +LIN +  +  L+ A+ + DEM ++G
Sbjct: 784 ILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 843

Query: 181 FECD 184
           F  D
Sbjct: 844 FVPD 847


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 43/316 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
             L P   T NIM++ LCK R  + A ++F    + G  P+ VTY  LI GL K G++  
Sbjct: 283 ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDE 342

Query: 64  ARWILKELGDSGHAPNAITYT-----------------------------------TIMK 88
           A  + +++ D+GH  N + YT                                   T M 
Sbjct: 343 AYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMD 402

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           C F+  + + G  I   ++  G+  D   Y  +I    K G+ +E ++    M   G  L
Sbjct: 403 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL 462

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D  +YN +++ +CK GK+  AY +L+EM+++  +    T+  ++DGL K   +  A +  
Sbjct: 463 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLF 522

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           E     G + N+  Y+ ++D  GK G+ID A  + E M  K    + +T++S++  L KA
Sbjct: 523 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKA 582

Query: 265 KRLPSASKLLLSCLKS 280
           + +  A    L C +S
Sbjct: 583 EEINEA----LVCFQS 594



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 4/305 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P ++T+NI+++ LC     + A R+   ++     P L+T NI++  LCKA +L  A
Sbjct: 249 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 308

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             I +     G  P+ +TY +++    +  +      +   M   G+  +   Y ++I  
Sbjct: 309 YKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRN 368

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   GR ++     ++++  G + D+   NT ++   K G++E   ++ +++   GF  D
Sbjct: 369 FFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPD 428

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +++ILI GL KAG  +        M + GF  +  AYN +VD   K GK+  A  + E
Sbjct: 429 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 488

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+ K       TY ++V  L K  RL  A  L       G+ +      +++DG    G
Sbjct: 489 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 548

Query: 301 CRREA 305
              EA
Sbjct: 549 RIDEA 553



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 142/278 (51%), Gaps = 4/278 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++  ++F+ L + G  P+L   N  +  + KAG +   R I +++   G  P+  +Y+ +
Sbjct: 376 EDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSIL 435

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +    +  + +    I  AMK++G+  D   Y  V+  F K G++ +A + +E+M    V
Sbjct: 436 IHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV 495

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q  + +Y  +++   K  +L+ AY+L +E + +G E +   ++ LIDG  K G I  A L
Sbjct: 496 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 555

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-EVK---DSFTYSSMVHNLC 262
            LE M K G   N+  +N ++D L K  +I+ A+  F+SM E+K   +++TYS +++ LC
Sbjct: 556 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLC 615

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           + ++   A        K G+         ++ GL   G
Sbjct: 616 RVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG 653



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 136/277 (49%), Gaps = 4/277 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++I+++GL K         +F  +++ GF  +   YN ++ G CK+G++  A  I
Sbjct: 427 PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 486

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+ +    P   TY  I+    +  +      +    K KG   +   Y ++I  F K
Sbjct: 487 LEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 546

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+ EA   +E+M+  G+  ++ ++N+L++   K  ++  A +    M++     + YT
Sbjct: 547 VGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYT 606

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILI+GLC+      A +  + M K G   N+  Y  ++  L K G I  A ++FE  +
Sbjct: 607 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 666

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
               + D+ ++++++  +  A R   A +  +  L S
Sbjct: 667 ANGGIPDAASFNALIEGMSNANRAMEAYQTTVYQLSS 703



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 143/312 (45%), Gaps = 5/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N+ ++   K    D A + F  L+  G  P+ V+Y  +I  LCKAGRL  A 
Sbjct: 111 LEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAE 170

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P A  Y T++       +++   ++L  ++ +G       + +++   
Sbjct: 171 ELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL 230

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA    E M  D  + +  +YN +I++ C  G++E AY +LDEME      + 
Sbjct: 231 GKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNL 289

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  I++D LCKA  ++ A    E  ++ G + +   Y  ++D LGK G++D A  +FE 
Sbjct: 290 LTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEK 349

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       +   Y+S++ N     R     K+    ++ G +   +     +D +  +G 
Sbjct: 350 MLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGE 409

Query: 302 RREAKKIQSKIR 313
             + + I   IR
Sbjct: 410 VEKGRMIFEDIR 421



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 140/309 (45%), Gaps = 5/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  + + +++  L + R  + AL + R +Q+ G+   +  +  L++ L + G++  A  +
Sbjct: 43  PAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALAL 102

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+  S   P+ + Y   + C  +     +  +    +K +G   D   Y ++I    K
Sbjct: 103 VDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCK 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GRL EA +   QM  +       +YNT+I  Y   G+ E AY LL+ + ++G      +
Sbjct: 163 AGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS 222

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              ++  L K   +  A    E M K   + N   YN I+D L   G+++ A  + + ME
Sbjct: 223 FNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEME 281

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               F    T + MV  LCKA++L  A K+  S  + G         +++DGL   G   
Sbjct: 282 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 341

Query: 304 EAKKIQSKI 312
           EA ++  K+
Sbjct: 342 EAYRLFEKM 350



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 40/347 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++  M+  LCK      A  +F  ++    VP    YN +I G   AGR   A 
Sbjct: 146 LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAY 205

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ L + G  P+ +++ +I+ C  + RK    L +   MK+     +   Y  +I   
Sbjct: 206 KLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEP-NSSTYNIIIDML 264

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR++EA   +++M    +  ++++ N +++  CK  KLE AY + +   ++G   D 
Sbjct: 265 CLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDC 324

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY---------------------- 223
            T+  LIDGL K G +  A    E M   G ++N   Y                      
Sbjct: 325 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKE 384

Query: 224 -------------NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
                        N  +D + K G+++    +FE +     + D  +YS ++H L KA +
Sbjct: 385 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 444

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
               S +  +  + G  +   A  AVVDG   SG   +A +I  +++
Sbjct: 445 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK 491



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 125/259 (48%), Gaps = 3/259 (1%)

Query: 19  GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
            L + R  D+A+     +++  F P    Y +LI  L +A R   A  +L+++ + G+  
Sbjct: 19  ALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEV 78

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
               +TT+++   R  +    L ++  +K      D   Y   I  F K G +  A  + 
Sbjct: 79  GVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFF 138

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
            ++   G++ D VSY ++I + CK G+L  A  L  +ME +      Y +  +I G   A
Sbjct: 139 HELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSA 198

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYS 255
           G  + A   LE + + G   ++ ++N I+  LGK  K+D A+++FE M+     +S TY+
Sbjct: 199 GRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYN 258

Query: 256 SMVHNLCKAKRLPSASKLL 274
            ++  LC   R+  A ++L
Sbjct: 259 IIIDMLCLGGRVEEAYRIL 277



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 35/153 (22%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   T+N +L+ L K    + AL  F+ +++    P   TY+ILI GLC+  +   A 
Sbjct: 565 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 624

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +++   G  PN +TYTT+                                   I+  
Sbjct: 625 VFWQDMQKQGLVPNVVTYTTM-----------------------------------ISGL 649

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            K+G + +A    E+   +G   D  S+N LI 
Sbjct: 650 AKVGNITDAYSLFERFKANGGIPDAASFNALIE 682


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 163/373 (43%), Gaps = 75/373 (20%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N M++G         A +MFR ++  G +P +V  N  +  LCK GR + A  I
Sbjct: 333 PDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEI 392

Query: 68  LKELGDSGHAPNAITYTTI------------MKCCFRNRKY------------------K 97
              +   GH P+ ++Y T+            M   F + K                   K
Sbjct: 393 FDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAK 452

Query: 98  LGLE-----ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL---- 148
            G+      I + M+++G + D   Y TVI+AF ++GRL +A +   QMV  G+Q     
Sbjct: 453 RGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAV 512

Query: 149 --------------------------------DIVSYNTLINLYCKEGKLEAAYLLLDEM 176
                                           DIV +N++IN  CK+G++  A+ + D +
Sbjct: 513 YHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLV 572

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
              G   D  T T LIDG C  G +  A   L+ M  +G ++++  Y+ ++D   K+G+I
Sbjct: 573 TDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRI 632

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           +  + +F  M+ K    ++ TY  M+  L +A R  +A K     ++SG  +  S    +
Sbjct: 633 NDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGII 692

Query: 293 VDGLRHSGCRREA 305
           + GL  + C  EA
Sbjct: 693 LGGLCRNNCADEA 705



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 5/272 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N++++ LCK R  D A  + R +  +G  P+ VTYN +I G    GRL+ A  +
Sbjct: 298 PDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKM 357

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++   G  PN +   + +    ++ + K   EI  +M  KG+  D   YCT++  +  
Sbjct: 358 FRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYAS 417

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G   +       M ++G+  D   +N LI+ Y K G ++ A L+  EM++QG   D  T
Sbjct: 418 EGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVT 477

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ +I    + G +  A      M   G   N   Y+ I+      G +  A  +   M 
Sbjct: 478 YSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMI 537

Query: 248 VK-----DSFTYSSMVHNLCKAKRLPSASKLL 274
            K     D   ++S++++LCK  R+  A  + 
Sbjct: 538 NKGIPRPDIVFFNSVINSLCKDGRVMDAHDIF 569



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 4/283 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G  +P    +N +++G  K   T  A  +F  + + G  P++VTYN++I  LCKA  +  
Sbjct: 259 GACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDK 318

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+++  +G  P+ +TY  ++       + K   ++   MK +G   +     + +A
Sbjct: 319 AELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLA 378

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +  K GR KEA +  + M   G + DIVSY TL++ Y  EG       L + M+  G   
Sbjct: 379 SLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAA 438

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D     ILI    K G +  A L    M + G   ++  Y+ ++    + G++  A+  F
Sbjct: 439 DCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKF 498

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             M  +    ++  Y S++   C    L  A +L+   +  G+
Sbjct: 499 NQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGI 541



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 139/311 (44%), Gaps = 6/311 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTAR 65
           P   +++I+L GLC N  +  AL +F+ + K G    P +V YN +I G  K G    A 
Sbjct: 226 PNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKAC 285

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P+ +TY  I+    + R       +L  M   G   D   Y  +I  +
Sbjct: 286 SLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGY 345

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +GRLKEA     +M + G+  +IV  N+ +   CK G+ + A  + D M  +G + D 
Sbjct: 346 ATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDI 405

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++  L+ G    G           M   G  ++   +N ++    K G +D A+ +F  
Sbjct: 406 VSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTE 465

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ +    D  TYS+++    +  RL  A +     +  G++   +   +++ G    G 
Sbjct: 466 MQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGG 525

Query: 302 RREAKKIQSKI 312
             +AK++ S++
Sbjct: 526 LVKAKELVSEM 536



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 124/262 (47%), Gaps = 8/262 (3%)

Query: 6   LTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P T  T++I+++  C+ R  D  L +F  + + G     +T + L+K LC A R   A
Sbjct: 152 VVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEA 211

Query: 65  -RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTV 121
              +L  + + G  PN  +Y+ I+K    N   +  L++   M ++G   + +   Y TV
Sbjct: 212 VNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTV 271

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F K G   +A     +M   GV+ D+V+YN +I+  CK   ++ A L+L +M   G 
Sbjct: 272 IHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGA 331

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           + D  T+  +I G    G +K A      M   G   N+   N  +  L K G+   A  
Sbjct: 332 QPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAE 391

Query: 242 VFESMEVK----DSFTYSSMVH 259
           +F+SM  K    D  +Y +++H
Sbjct: 392 IFDSMTAKGHKPDIVSYCTLLH 413



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 141/345 (40%), Gaps = 75/345 (21%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++   K    D+A+ +F  +Q+ G  P++VTY+ +I    + GRL  A     ++ 
Sbjct: 443 FNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV 502

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFVKIGRL 131
             G  PN   Y +I++    +       E++S M  KG    D   + +VI +  K GR+
Sbjct: 503 ARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRV 562

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D  + +   G + D++++ +LI+ YC  GK++ A+ +LD ME  G E D  T++ L
Sbjct: 563 MDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTL 622

Query: 192 IDG-----------------------------------LCKAGNIKGARLHLEYMNKIGF 216
           +DG                                   L +AG    AR     M + G 
Sbjct: 623 LDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGT 682

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESM--------------------------EVKD 250
              +  Y  I+  L ++   D AI +F+ +                          E K+
Sbjct: 683 TVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKE 742

Query: 251 SF-------------TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            F             TY  M+ NL K   +  A+ +  S  KSG+
Sbjct: 743 LFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGI 787



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 6/243 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN ++N LCK+    +A  +F  +   G  P+++T+  LI G C  G++  A  I
Sbjct: 544 PDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKI 603

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G   + +TY+T++   F+N +   GL +   M+RKG   +   Y  ++A   +
Sbjct: 604 LDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR   A     +M+  G  + +  Y  ++   C+    + A +L    +K G    K++
Sbjct: 664 AGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILF---QKLGTMNVKFS 720

Query: 188 HTIL---IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            TIL   I+ + K    + A+     ++  G   N   Y  ++  L KDG ++ A N+F 
Sbjct: 721 ITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFS 780

Query: 245 SME 247
           SME
Sbjct: 781 SME 783



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 101/242 (41%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  +++G C     D A ++   ++  G   ++VTY+ L+ G  K GR+     +
Sbjct: 579 PDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTL 638

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G  PN +TY  ++   FR  +     +    M   G T     Y  ++    +
Sbjct: 639 FREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCR 698

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    +++ T  V+  I   NT+IN   K  + E A  L   +   G   ++ T
Sbjct: 699 NNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNEST 758

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + ++I  L K G ++ A      M K G        N I+  L + G+I  A N    ++
Sbjct: 759 YGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVD 818

Query: 248 VK 249
            K
Sbjct: 819 GK 820



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 42/239 (17%)

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           TY+ +M CC R R+  LGL +   + R G                               
Sbjct: 159 TYSILMDCCCRARRPDLGLVLFGCILRTG------------------------------- 187

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAY-LLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
               +++  ++ +TL+   C   + E A  +LL  M + G   + ++++I++ GLC    
Sbjct: 188 ----LKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSM 243

Query: 201 IKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTY 254
            + A    + M K G     N+ AYN ++    K+G+   A ++F  M  +    D  TY
Sbjct: 244 SQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTY 303

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           + ++  LCKA+ +  A  +L     +G +        ++ G    G  +EA K+  K++
Sbjct: 304 NLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMK 362



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 84/192 (43%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+ IML GL +   T  A + F  + + G    +  Y I++ GLC+      A  +
Sbjct: 649 PNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIIL 708

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            ++LG      +     T++   ++ ++ +   E+ + +   G   +   Y  +I   +K
Sbjct: 709 FQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLK 768

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +++A +    M   G+       N +I +  ++G++  A   L +++ +    +  T
Sbjct: 769 DGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEAST 828

Query: 188 HTILIDGLCKAG 199
            ++++    + G
Sbjct: 829 TSLMLSLFSRKG 840



 Score = 37.4 bits (85), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P  +T+ +M+  L K+   ++A  MF  ++K G VP     N +I+ L + G +  A 
Sbjct: 752 LLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAG 811

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
             L ++        A T + ++    R  KY   +++L A   K   FDG
Sbjct: 812 NYLSKVDGKRILLEASTTSLMLSLFSRKGKYHEDMKLLPA---KYNFFDG 858


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 159/327 (48%), Gaps = 15/327 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP T TFNI++ G C N   D     F+ + +    P++VTYN L+ GLC+AG+++ A 
Sbjct: 232 VTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAH 291

Query: 66  WILKEL--GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            ++K +       +PN +TYTT+++     +     L +L+ M  +G   +   Y T+I 
Sbjct: 292 NVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQ 351

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
              +  +L +  + +E MV DG  + D  + NTLI  +C  GKLE A+ + ++M +   +
Sbjct: 352 GLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQ 411

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLE-------YMNKIGFDSNLEAYNCIVDRLGKDGK 235
            D  T+++L+  LC+ G+ + A    +        ++ +G    + AYN + + L  +GK
Sbjct: 412 PDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGK 471

Query: 236 IDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
              A  VF  +     +D  +Y +++   C+     +   LL+  L+            +
Sbjct: 472 TKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLM 531

Query: 293 VDGLRHSGCRREAKKIQSKIRMAKISH 319
           +DGL   G    A K  S  +M K SH
Sbjct: 532 IDGLLKKGDPVLAHK--SLEKMLKSSH 556



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 143/312 (45%), Gaps = 17/312 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+   L P   T+N ++ GLC+ +  D    +  G+   G F+P+  T N LIK  C  G
Sbjct: 334 MVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMG 393

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  + +++ +    P++ TY+ +++   +   ++   E    +  K       G  
Sbjct: 394 KLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCK 453

Query: 120 TVIAAFVKI-------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
            ++AA+  +       G+ K+A     Q++  G Q D  SY TLI  +C+EG  EA + L
Sbjct: 454 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDL 512

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           L  M ++ F  D  T+ ++IDGL K G+   A   LE M K         ++ I+  L +
Sbjct: 513 LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVE 572

Query: 233 DGKIDHAINVFESMEVK--------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            G    + ++ + M  +         + T   +V  LC++++L  A K+LL  L+    +
Sbjct: 573 KGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQSV 632

Query: 285 LKSAQKAVVDGL 296
                  V+ GL
Sbjct: 633 DIDMCSTVISGL 644



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 124/301 (41%), Gaps = 42/301 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            +L P  +   + L  L   R    AL  FR ++  GF     +Y ++I+ L ++  L  
Sbjct: 87  AELAPSLSKTTV-LQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNA 145

Query: 64  AR-WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           AR ++      SG A                   KLG    +++ R       +G+    
Sbjct: 146 ARNFVFSIEKKSGGA------------------VKLGDRFFNSLIR------SYGWA--- 178

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGF 181
                 G  +E+    + M   GV   +V++N+L+++  K G+   A  L DEM +  G 
Sbjct: 179 ------GLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGV 232

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D YT  ILI G C    +       + M++   D ++  YN +VD L + GK+  A N
Sbjct: 233 TPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHN 292

Query: 242 VFESMEVKDS------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           V + M  K         TY++++   C  + +  A  LL   +  G++  K     ++ G
Sbjct: 293 VVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQG 352

Query: 296 L 296
           L
Sbjct: 353 L 353



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 40/214 (18%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG--------------------------- 40
           P  A +N M   LC N  T  A R+FR L K G                           
Sbjct: 454 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLL 513

Query: 41  -------FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM-----K 88
                  FVP+  TY ++I GL K G    A   L+++  S H P    + +I+     K
Sbjct: 514 VLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEK 573

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
            C       + L +L    R+           +++   +  +L EA   +   +     +
Sbjct: 574 GCAHESASLVKL-MLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQSV 632

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           DI   +T+I+  CK  K+  A+ L  E+ ++G +
Sbjct: 633 DIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQ 666


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 6/305 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P + TF+I++NGL K    D A+ +FR + + G  P+L+ YN LI GLC + RL+ + 
Sbjct: 320 VPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESC 379

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +SG  P + T   I  C  R       L +L  M+  G+        +++   
Sbjct: 380 GLLQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKEL 439

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+  EA  ++  M  +G Q DIV+Y+  ++   K  +++ A  L  ++  QG+  D 
Sbjct: 440 CKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDV 499

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             + ILI GLCK   I  A+  L  M + G   +   YN ++D L K   ++ A+ +F S
Sbjct: 500 IAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAM-LFLS 558

Query: 246 MEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M ++     +  TYS++++ LC A R   A  L     + G      A  A + GL + G
Sbjct: 559 MMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCG 618

Query: 301 CRREA 305
              EA
Sbjct: 619 RPNEA 623



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 128/280 (45%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P + T N +   LC+      AL + + ++ HG VP +     L+K LCK G+   A 
Sbjct: 390 IEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEAC 449

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L ++ + G  P+ + Y+  +    + ++    L++   +  +GY  D   Y  +I   
Sbjct: 450 KFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGL 509

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R+ EA + + +M   G+    V+YNTLI+  CK   LE A L L  M ++  E + 
Sbjct: 510 CKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNV 569

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LI+GLC AG    A +    M + G   +  AY   +  L   G+ + A+     
Sbjct: 570 ITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLRE 629

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ME +    D++ Y  +++        P A ++L   +  G
Sbjct: 630 MEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKG 669



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 118/286 (41%), Gaps = 57/286 (19%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++  L+GL K +  D AL++F+ +   G+ P+++ YNILIKGLCK  R+  A+ +
Sbjct: 462 PDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNL 521

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+ + G  P+A+T                                   Y T+I    K
Sbjct: 522 LHEMEEKGLVPSAVT-----------------------------------YNTLIDGLCK 546

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              L+EA  ++  M+    + ++++Y+TLIN  C  G+ + A +L +EM ++G       
Sbjct: 547 TDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIA 606

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +   I GL   G    A ++L  M +     +   Y  +++    D     A  + + M 
Sbjct: 607 YMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMV 666

Query: 248 VKDSFT----------------------YSSMVHNLCKAKRLPSAS 271
            K  F                        SS + NL     +PSAS
Sbjct: 667 DKGKFPDLHDKNHISVRNAILKFSEDARTSSSIKNLLAKGSIPSAS 712



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 142/382 (37%), Gaps = 88/382 (23%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF  ++ G  K    D AL +F  ++K GF P++  Y+++I GLC    ++ A  +  E+
Sbjct: 172 TFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEM 231

Query: 72  G---------------------------------DSGHAPNAITYTTIMKCCFRNRKYKL 98
                                             D     + + Y +++     N     
Sbjct: 232 KGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHK 291

Query: 99  GLEILSAMKRKGYTFDG----------------FGYCTVIAAFVKIGRLKEATDYMEQMV 142
              +L A+       DG                  +  VI   +K G L  A      M 
Sbjct: 292 AYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMA 351

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
             G + D++ YN LI+  C   +L+ +  LL EME+ G E   +T+  +   LC+  +I 
Sbjct: 352 RIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHDIS 411

Query: 203 GA-------RLH----------------------------LEYMNKIGFDSNLEAYNCIV 227
           GA       R+H                            L  M + GF  ++ AY+  +
Sbjct: 412 GALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACL 471

Query: 228 DRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           D L K  ++D A+ +F+ +  +    D   Y+ ++  LCK +R+  A  LL    + G+ 
Sbjct: 472 DGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLV 531

Query: 284 ILKSAQKAVVDGLRHSGCRREA 305
                   ++DGL  +    EA
Sbjct: 532 PSAVTYNTLIDGLCKTDHLEEA 553



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 120/246 (48%), Gaps = 4/246 (1%)

Query: 32  MFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
           +F  +QK G  VP   +Y  L++ L K+  +      LKE+ D G   +  T T +++  
Sbjct: 52  LFDQVQKMGLCVPNSYSYTCLLEVLSKSICIDLLEMRLKEMHDHGWGFDKYTLTPVLQVY 111

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
               ++   L++ + +  +G+  D + +  ++ AF K G++ +A + +E M    V+L+ 
Sbjct: 112 CNMAEFDKALDVFNEIHDRGWV-DEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNK 170

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            ++ +LI  + KE +++ A  L D+M+K GF  D   + ++I GLC   ++K A      
Sbjct: 171 KTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSE 230

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAI-NVFESMEVKDS-FTYSSMVHNLCKAKRLP 268
           M       +++    ++    K+ ++      + E M+ K S   Y+S++++L     + 
Sbjct: 231 MKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVH 290

Query: 269 SASKLL 274
            A  LL
Sbjct: 291 KAYHLL 296



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 49/110 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +  P   T++ ++NGLC     D+AL ++  + + G  P  + Y   I GL   GR
Sbjct: 560 MIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGR 619

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
              A   L+E+ +    P+   Y  ++     +    L  EIL  M  KG
Sbjct: 620 PNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKG 669


>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
 gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
          Length = 654

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 154/338 (45%), Gaps = 43/338 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTA 64
           + P    +N +L+GL      D A+ +F  +     V P++V+YNILIKG C+AGR   A
Sbjct: 214 VEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDA 273

Query: 65  RWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY------------ 111
              L E+ +     P+ +TY T+M+C +    + + + +   M+ +G             
Sbjct: 274 MARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLV 333

Query: 112 ---------TFDGFG----------------YCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                     F+G                  Y  +I +  K GR KEA    E+M   G+
Sbjct: 334 IGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGL 393

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           +LD V+Y  ++N  C+ GKL+ A       +++G   +   +T LIDG  KAG +  ++ 
Sbjct: 394 KLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKE 453

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             E M   GF  +   YN ++D L K G++D A  +++ ME     +  +TY+ ++  L 
Sbjct: 454 LFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLF 513

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           K  +   A K   + +  G+    +A + +  GL  SG
Sbjct: 514 KEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSG 551



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 135/305 (44%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            + +++  LCK+      + +F  + K G       Y  LI  + K GR + A  + + +
Sbjct: 329 AYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERM 388

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            DSG   +++TY  I+ C  R  K    +    + + KG   +   Y ++I  F K G +
Sbjct: 389 KDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMV 448

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            ++ +  E+M+  G   D   YN LI+   K G+++ A  L   ME  G +   YT+TIL
Sbjct: 449 DQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTIL 508

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SMEV 248
           IDGL K    + A    + M   G      A+  +   L   GK   A  + +    M V
Sbjct: 509 IDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGV 568

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK- 307
                +  M++ LCKA R   A KL    ++ G  I    +  +++ LR +G    A K 
Sbjct: 569 IPETAHEDMINVLCKAGRFKQACKLADGIVQKGREIPGRVRTMMINALRKAGNTDLAVKL 628

Query: 308 IQSKI 312
           + SKI
Sbjct: 629 VHSKI 633



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 43/247 (17%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKE 163
           AM+  G       Y  ++   V  G L  A +  + M T D V+ D+VSYN LI  YC+ 
Sbjct: 208 AMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRA 267

Query: 164 GKLEAAYLLLDEMEKQ--------------------------------------GFECDK 185
           G+   A   L EM++Q                                      G +  +
Sbjct: 268 GRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQ 327

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + + ++I  LCK G         E M K G  +N   Y  ++D +GK G+   A+ +FE 
Sbjct: 328 HAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFER 387

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      DS TY  +V+ LC+  +L  A     SC + G+ +      +++DG   +G 
Sbjct: 388 MKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGM 447

Query: 302 RREAKKI 308
             ++K++
Sbjct: 448 VDQSKEL 454



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 36/200 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P +  +N++++GL K+   D+A  +++ ++  G    + TY ILI GL     
Sbjct: 458 MIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGL----- 512

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                                         F+  K +  L+   AM  KG T     + T
Sbjct: 513 ------------------------------FKEHKNEEALKFWDAMIDKGITPTAAAFRT 542

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           + +     G+   A   ++++   GV +   ++  +IN+ CK G+ + A  L D + ++G
Sbjct: 543 LASGLCLSGKFSRACRILDELAPMGV-IPETAHEDMINVLCKAGRFKQACKLADGIVQKG 601

Query: 181 FECDKYTHTILIDGLCKAGN 200
            E      T++I+ L KAGN
Sbjct: 602 REIPGRVRTMMINALRKAGN 621


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 39/357 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T++ ++  L K R ++  + + + ++  G  P + T+ I I+ L +AG+
Sbjct: 218 MVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGK 277

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I + + D G  P+ +TYT ++       + +   E+   MK  G+  D   Y T
Sbjct: 278 IDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYIT 337

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   G L    ++  QM  DG   D+V++  L+++ CK    + A+   D M KQG
Sbjct: 338 LLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG 397

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T+  LI GL +AG I+ A   L  M  +G       YN  +D  GK G+   A+
Sbjct: 398 ILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAV 457

Query: 241 NVFESMEVK---------------------------------------DSFTYSSMVHNL 261
             FE M+ K                                       DS TY+ M+   
Sbjct: 458 ETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCY 517

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            K  ++  A  LL   +++G         +++D L  +G   EA ++  +++  K+S
Sbjct: 518 SKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 135/272 (49%), Gaps = 4/272 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            ++P  A++N ++  L +  YT+ A  +F+ ++  G  P+  T+N+L+    K+G++    
Sbjct: 784  ISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELF 843

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + KE+      P+AITY  ++    ++      L+    +    +      Y  +I   
Sbjct: 844  ELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGL 903

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             K+GRL+EA    E+M   G + +   +N LIN Y K G  E A  L   M  +G   D 
Sbjct: 904  AKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDL 963

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             ++TIL+D LC AG +  A  +   +   G D +  AYN I++ LGK  +++ A+ ++  
Sbjct: 964  KSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNE 1023

Query: 246  ME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            M     V D +TY+S++ NL  A  +  A ++
Sbjct: 1024 MRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 139/306 (45%), Gaps = 4/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N +++ L ++ +   AL ++R +   G  P L TY+ L+  L K         +LKE+
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  PN  T+T  ++   R  K     EI   M  +G   D   Y  +I A    G+L
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQL 313

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A +   +M  +G + D V Y TL++ +   G L+       +ME  G+  D  T TIL
Sbjct: 314 ENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTIL 373

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           +D LCKA +   A    + M K G   NL  YN ++  L + G+I+ A+ +  +ME    
Sbjct: 374 VDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGV 433

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
              ++TY+  +    K+     A +        G+     A  A +  L   G  REAK 
Sbjct: 434 QPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKT 493

Query: 308 IQSKIR 313
           + + +R
Sbjct: 494 MFNGLR 499



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 115/248 (46%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI     P   T+NI+++ L K+   D AL  F  L    F P   TY  LI GL K GR
Sbjct: 849  MISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGR 908

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L  A  + +E+ D G  PN   +  ++    +    +   ++   M  +G   D   Y  
Sbjct: 909  LEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI 968

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++      GR+ EA  Y  ++ + G+  D ++YN +IN   K  ++E A  L +EM  +G
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               D YT+  L+  L  AG ++ A+   E +   G + ++  YN ++         +HA 
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAY 1088

Query: 241  NVFESMEV 248
             V+++M V
Sbjct: 1089 TVYKNMMV 1096



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 131/268 (48%), Gaps = 3/268 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+NI ++   K+  T  A+  F  ++  G VP +V  N  +  L + GRLR A+
Sbjct: 433 VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   L ++G AP+++TY  +MKC  +  +    + +LS M R G   D     ++I + 
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ EA    ++M    +   +V+YNTL++   KEG+++ A  L + M ++    + 
Sbjct: 553 YKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNT 612

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +   L+D  CK   ++ A      M  +    ++  YN ++  L K+ K++HA   F  
Sbjct: 613 ISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ 672

Query: 246 MEV---KDSFTYSSMVHNLCKAKRLPSA 270
           ++     D  T  +++  L K  ++  A
Sbjct: 673 LKKSMHPDHVTICTLLPGLVKCGQIGDA 700



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 128/287 (44%), Gaps = 39/287 (13%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D     +  ++  G++P++VT+ IL+  LCKA     A      +   G  PN  TY T+
Sbjct: 349 DTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408

Query: 87  MKCCFRNRKYKLGLEILSAMKRKG-----YTFDGF-----------------------GY 118
           +    R  + +  L++L  M+  G     YT++ F                       G 
Sbjct: 409 ICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGI 468

Query: 119 CTVIAA-------FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
              I A         ++GRL+EA      +  +G+  D V+YN ++  Y K G+++ A  
Sbjct: 469 VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVN 528

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
           LL EM + G E D      LID L KAG +  A    + M  +     +  YN ++  LG
Sbjct: 529 LLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLG 588

Query: 232 KDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           K+G++  AI +FESM  K    ++ ++++++   CK   +  A K+ 
Sbjct: 589 KEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMF 635



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 130/286 (45%), Gaps = 4/286 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++K GFV    +YN LI  L ++G    A  + + +   G  P+  TY+ +M    + R 
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRD 242

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            ++ + +L  M+  G   + + +   I    + G++ EA +   +M  +G   D+V+Y  
Sbjct: 243 SEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTV 302

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+  C  G+LE A  L  +M+  G + D+  +  L+D     G++   +     M   G
Sbjct: 303 LIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADG 362

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
           +  ++  +  +VD L K    D A   F+ M     + +  TY++++  L +A R+  A 
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           KLL +    GV+         +D    SG   +A +   K++   I
Sbjct: 423 KLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGI 468



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 126/267 (47%), Gaps = 8/267 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P + T+N+M+    K    D A+ +   + ++G  P+++  N LI  L KAGR+  A 
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + D   +P  +TY T++    +  + +  +E+  +M  K  + +   + T++  F
Sbjct: 563 QMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCF 622

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   ++ A     +M     + D+++YNT+I    KE K+  A+    ++ K+    D 
Sbjct: 623 CKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL-KKSMHPDH 681

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            T   L+ GL K G I  A  +  ++M ++ F  N   +  ++     + ++D AI   E
Sbjct: 682 VTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAE 741

Query: 245 SMEV-----KDSFTYSSMVHNLCKAKR 266
            + +     +DSF    +V  LCK KR
Sbjct: 742 ELVLNGICREDSFLI-PLVRVLCKHKR 767



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 152/384 (39%), Gaps = 77/384 (20%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P     N +++ L K    D A +MF  ++     P +VTYN L+ GL K GR
Sbjct: 533 MIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGR 592

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  + + + +   +PN I++ T++ C  +N + +L L++ S M       D   Y T
Sbjct: 593 VQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNT 652

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL-EAAYLLLDEMEKQ 179
           VI   +K  ++  A  +  Q+    +  D V+  TL+    K G++ +A  +  D M + 
Sbjct: 653 VIYGLIKENKVNHAFWFFHQL-KKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQV 711

Query: 180 GF------------------ECDK---YTHTILIDGLCKAGN---------------IKG 203
            F                  E DK   +   ++++G+C+  +               +  
Sbjct: 712 RFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYA 771

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRL--------------------------------- 230
            ++  ++  K+G    L +YNC++  L                                 
Sbjct: 772 YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 231 --GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             GK GKI     +++ M  +    D+ TY+ ++ +L K+  L  A       + S  R 
Sbjct: 832 VHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRP 891

Query: 285 LKSAQKAVVDGLRHSGCRREAKKI 308
                  ++DGL   G   EA ++
Sbjct: 892 TPRTYGPLIDGLAKVGRLEEAMRL 915



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%)

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           TY TI K        +    +L+ M++ G+  + + Y  +I   ++ G   EA +   +M
Sbjct: 159 TYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRM 218

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
           V++G++  + +Y+ L+    K+   E   +LL EME  G   + YT TI I  L +AG I
Sbjct: 219 VSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKI 278

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             A      M+  G   +L  Y  ++D L   G++++A  +F  M+
Sbjct: 279 DEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMK 324



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 4/184 (2%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +   M++K    D   Y T+  A    G L++ T  + +M   G  L+  SYN LI+L  
Sbjct: 144 VFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLI 203

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           + G    A  +   M  +G +    T++ L+  L K  + +   + L+ M  +G   N+ 
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            +   +  LG+ GKID A  +F  M+ +    D  TY+ ++  LC A +L +A +L +  
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323

Query: 278 LKSG 281
             +G
Sbjct: 324 KANG 327



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 37/81 (45%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            + P   T+N ++  L      + A RM+  LQ  G  P++ TYN LI+G   +     A 
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAY 1088

Query: 66   WILKELGDSGHAPNAITYTTI 86
             + K +   G  PN  TY  +
Sbjct: 1089 TVYKNMMVDGCNPNIGTYAQL 1109


>gi|224056475|ref|XP_002298874.1| predicted protein [Populus trichocarpa]
 gi|222846132|gb|EEE83679.1| predicted protein [Populus trichocarpa]
          Length = 948

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 153/306 (50%), Gaps = 5/306 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  M++GLCK+   D +L++   + K G  P+++T+++LI G CKAG+++ A+ ++ ++ 
Sbjct: 188 YTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKMF 247

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            +G APN + Y T++    +           + M R G+  D F    +I++  + GR+ 
Sbjct: 248 KAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAGRVA 307

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D+M  M T  +  + ++++ +IN Y   G    A+ + DEM K G     +T+  L+
Sbjct: 308 EAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAFSMFDEMIKLGHCPSHFTYGSLL 367

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EV 248
            GLCK GN++ A+  L  ++ I    +   YN I+    K GK+  A+ +F  M     +
Sbjct: 368 KGLCKGGNLREAKKLLYKLHHIPAAVDTNIYNTILSETCKRGKLSDAVALFGEMVQFNVL 427

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRILKSAQKAVVDGLRHSGCRREAKK 307
            DS TY+ ++  L +  ++  A       L  G +   K    ++ DGL   G    A  
Sbjct: 428 PDSHTYAIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMYTSLFDGLFKVGQSNAASY 487

Query: 308 IQSKIR 313
           I  ++ 
Sbjct: 488 IYEEME 493



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L+P   T+NI+++G C     + ALR+   ++  G  P+ V Y  L+ GL K  +
Sbjct: 106 MLMLNLSPNRVTYNILIDGHCDCGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAK 165

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +++ +  SG       YT ++    ++      L++L  M + G + D   +  
Sbjct: 166 FDIAKSLMERIRMSGMVVGYRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSV 225

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K G++K A + + +M   G+  + V Y TLI   CK+G +  A+     M + G
Sbjct: 226 LINGFCKAGKIKNAKEVICKMFKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTG 285

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D +   +LI  LC+AG +  A   + +M+ I    N   ++CI++  G  G    A 
Sbjct: 286 HDVDYFICNVLISSLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAF 345

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++F+ M         FTY S++  LCK   L  A KLL
Sbjct: 346 SMFDEMIKLGHCPSHFTYGSLLKGLCKGGNLREAKKLL 383



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 4/251 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++  G+VP +VTYN ++   CK GR + A  ++  +   G   +  TY  ++    +N +
Sbjct: 1   MEGSGYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNR 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
              G  +L  M+++    + F Y T+I   +K  ++  AT    +M+   +  + V+YN 
Sbjct: 61  SAKGYLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNI 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+ +C  G  E A  LLD ME +G   D+  +  L+ GL K      A+  +E +   G
Sbjct: 121 LIDGHCDCGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSG 180

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSAS 271
                 AY  ++D L K G +D ++ + + M       D  T+S +++  CKA ++ +A 
Sbjct: 181 MVVGYRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAK 240

Query: 272 KLLLSCLKSGV 282
           +++    K+G+
Sbjct: 241 EVICKMFKAGL 251



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 4/279 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N +LN  CK      A  +   ++  G   ++ TYN+LI  LCK  R      
Sbjct: 7   VPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNRSAKGYL 66

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK++     APN  TY T++    + RK      + + M     + +   Y  +I    
Sbjct: 67  LLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHC 126

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G  ++A   ++ M   G++ D V+Y  L++   K  K + A  L++ +   G      
Sbjct: 127 DCGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVGYR 186

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV---- 242
            +T +IDGLCK G +  +   L+ M K G   ++  ++ +++   K GKI +A  V    
Sbjct: 187 AYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKM 246

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           F++    +   Y+++++N CK   +  A +   +  ++G
Sbjct: 247 FKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTG 285



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 135/299 (45%), Gaps = 4/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T   N +L+G  +    +   ++F  +Q     P L TYNIL+ G  K   L    
Sbjct: 497 INPDTIAINAVLDGYSRMGKMEKVEKLFIKMQSGSLTPSLATYNILLHGYSKKKDLLKCS 556

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
                +   G +P+ +T  +I+    ++    +G ++L  M  +    D      +I   
Sbjct: 557 KFYNIMTRMGISPDKLTCHSIILGLCKSGMLDVGFKMLKKMIMEDTLVDQLTLNMLITNS 616

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  ++ +A D +      G+  D+ +YN +     +   L  ++LLL +M ++G     
Sbjct: 617 CETDKMGKAFDLLNIKNLLGIIPDVNTYNAIFTGLNRASALRESHLLLHDMLERGITPTS 676

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  LI+G+C+ G+I+GA    + M  IG  S   A + +V  L + GK++ A+ V + 
Sbjct: 677 TQYISLINGMCRMGDIQGAFRLKDEMEAIGVSSWDVAESAMVRGLAQCGKVEEAMLVLDC 736

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M     +    T+++++H LCK  +L  A KL       GV++   A   ++ GL   G
Sbjct: 737 MLQKRLIPTVATFTTLMHMLCKKAKLSEALKLRGKMALYGVKLDVVAYNVLISGLCADG 795



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 4/266 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M  G LTP  AT+NI+L+G  K +      + +  + + G  P+ +T + +I GLCK+G 
Sbjct: 527 MQSGSLTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGM 586

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     +LK++       + +T   ++       K     ++L+     G   D   Y  
Sbjct: 587 LDVGFKMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNA 646

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +     +   L+E+   +  M+  G+      Y +LIN  C+ G ++ A+ L DEME  G
Sbjct: 647 IFTGLNRASALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAIG 706

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                   + ++ GL + G ++ A L L+ M +      +  +  ++  L K  K+  A+
Sbjct: 707 VSSWDVAESAMVRGLAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHMLCKKAKLSEAL 766

Query: 241 NVFESMEVK----DSFTYSSMVHNLC 262
            +   M +     D   Y+ ++  LC
Sbjct: 767 KLRGKMALYGVKLDVVAYNVLISGLC 792



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 142/316 (44%), Gaps = 9/316 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL- 68
           T  +N +L+  CK     +A+ +F  + +   +P+  TY I++ GL + G++  A     
Sbjct: 395 TNIYNTILSETCKRGKLSDAVALFGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALLFFE 454

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           K L     +PN + YT++    F+  +      I   M+ KG   D      V+  + ++
Sbjct: 455 KALARGTLSPNKVMYTSLFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRM 514

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G++++      +M +  +   + +YN L++ Y K+  L       + M + G   DK T 
Sbjct: 515 GKMEKVEKLFIKMQSGSLTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTC 574

Query: 189 TILIDGLCKAG--NIKGARLHLEYMNKIGFD----SNLEAYNCIVDRLGKDGKIDHAINV 242
             +I GLCK+G  ++    L    M     D    + L   +C  D++GK   + +  N+
Sbjct: 575 HSIILGLCKSGMLDVGFKMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNL 634

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                + D  TY+++   L +A  L  +  LL   L+ G+    +   ++++G+   G  
Sbjct: 635 LGI--IPDVNTYNAIFTGLNRASALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDI 692

Query: 303 REAKKIQSKIRMAKIS 318
           + A +++ ++    +S
Sbjct: 693 QGAFRLKDEMEAIGVS 708



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 109/244 (44%), Gaps = 1/244 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D      T N+++   C+      A  +       G +P++ TYN +  GL +A  
Sbjct: 597 MIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNAIFTGLNRASA 656

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR +  +L ++ + G  P +  Y +++    R    +    +   M+  G +        
Sbjct: 657 LRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAIGVSSWDVAESA 716

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + G+++EA   ++ M+   +   + ++ TL+++ CK+ KL  A  L  +M   G
Sbjct: 717 MVRGLAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHMLCKKAKLSEALKLRGKMALYG 776

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG-KDGKIDHA 239
            + D   + +LI GLC  G+   A    E M + G   N   Y  ++D +   +G+++  
Sbjct: 777 VKLDVVAYNVLISGLCADGDALAAFNLYEEMKERGLWPNTTTYCTLIDAISTNEGEVEER 836

Query: 240 INVF 243
           + V+
Sbjct: 837 LLVY 840



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 128/305 (41%), Gaps = 9/305 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +L GLCK      A ++   L       +   YN ++   CK G+L  A  +
Sbjct: 358 PSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNIYNTILSETCKRGKLSDAVAL 417

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS-AMKRKGYTFDGFGYCTVIAAFV 126
             E+      P++ TY  I+    R  K    L     A+ R   + +   Y ++     
Sbjct: 418 FGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMYTSLFDGLF 477

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G+   A+   E+M   G+  D ++ N +++ Y + GK+E    L  +M+         
Sbjct: 478 KVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQSGSLTPSLA 537

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ IL+ G  K  ++         M ++G   +    + I+  L K G +D    + + M
Sbjct: 538 TYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGMLDVGFKMLKKM 597

Query: 247 EVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ--KAVVDGLRHSG 300
            ++D+     T + ++ N C+  ++  A  LL   +K+ + I+       A+  GL  + 
Sbjct: 598 IMEDTLVDQLTLNMLITNSCETDKMGKAFDLL--NIKNLLGIIPDVNTYNAIFTGLNRAS 655

Query: 301 CRREA 305
             RE+
Sbjct: 656 ALRES 660


>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 657

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 154/338 (45%), Gaps = 43/338 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTA 64
           + P    +N +L+GL      D A+ +F  +     V P++V+YNILIKG C+AGR   A
Sbjct: 217 VEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDA 276

Query: 65  RWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY------------ 111
              L E+ +     P+ +TY T+M+C +    + + + +   M+ +G             
Sbjct: 277 MARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLV 336

Query: 112 ---------TFDGFG----------------YCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                     F+G                  Y  +I +  K GR KEA    E+M   G+
Sbjct: 337 IGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGL 396

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           +LD V+Y  ++N  C+ GKL+ A       +++G   +   +T LIDG  KAG +  ++ 
Sbjct: 397 KLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKE 456

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             E M   GF  +   YN ++D L K G++D A  +++ ME     +  +TY+ ++  L 
Sbjct: 457 LFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLF 516

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           K  +   A K   + +  G+    +A + +  GL  SG
Sbjct: 517 KEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSG 554



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 135/305 (44%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            + +++  LCK+      + +F  + K G       Y  LI  + K GR + A  + + +
Sbjct: 332 AYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERM 391

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            DSG   +++TY  I+ C  R  K    +    + + KG   +   Y ++I  F K G +
Sbjct: 392 KDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMV 451

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            ++ +  E+M+  G   D   YN LI+   K G+++ A  L   ME  G +   YT+TIL
Sbjct: 452 DQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTIL 511

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SMEV 248
           IDGL K    + A    + M   G      A+  +   L   GK   A  + +    M V
Sbjct: 512 IDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGV 571

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK- 307
                +  M++ LCKA R   A KL    ++ G  I    +  +++ LR +G    A K 
Sbjct: 572 IPETAHEDMINVLCKAGRFKQACKLADGIVQKGREIPGRVRTMMINALRKAGNTDLAVKL 631

Query: 308 IQSKI 312
           + SKI
Sbjct: 632 VHSKI 636



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 43/247 (17%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKE 163
           AM+  G       Y  ++   V  G L  A +  + M T D V+ D+VSYN LI  YC+ 
Sbjct: 211 AMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRA 270

Query: 164 GKLEAAYLLLDEMEKQ--------------------------------------GFECDK 185
           G+   A   L EM++Q                                      G +  +
Sbjct: 271 GRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQ 330

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + + ++I  LCK G         E M K G  +N   Y  ++D +GK G+   A+ +FE 
Sbjct: 331 HAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFER 390

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      DS TY  +V+ LC+  +L  A     SC + G+ +      +++DG   +G 
Sbjct: 391 MKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGM 450

Query: 302 RREAKKI 308
             ++K++
Sbjct: 451 VDQSKEL 457



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 36/200 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P +  +N++++GL K+   D+A  +++ ++  G    + TY ILI GL     
Sbjct: 461 MIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGL----- 515

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                                         F+  K +  L+   AM  KG T     + T
Sbjct: 516 ------------------------------FKEHKNEEALKFWDAMIDKGITPTAAAFRT 545

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           + +     G+   A   ++++   GV +   ++  +IN+ CK G+ + A  L D + ++G
Sbjct: 546 LASGLCLSGKFSRACRILDELAPMGV-IPETAHEDMINVLCKAGRFKQACKLADGIVQKG 604

Query: 181 FECDKYTHTILIDGLCKAGN 200
            E      T++I+ L KAGN
Sbjct: 605 REIPGRVRTMMINALRKAGN 624


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 143/280 (51%), Gaps = 5/280 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T   +++GLCK  +T+ A R+F  L +     P ++TY  +I G C+  ++  A  
Sbjct: 305 PNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEM 364

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  + + G APN  TYTT++    +   ++   E+++ M  +G++ +   Y  ++    
Sbjct: 365 LLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLC 424

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR++EA   ++    +G+  D V+Y  LI+ +CK+ +++ A +L ++M K G + D +
Sbjct: 425 KKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIH 484

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++T LI   C+   +K + +  E   + G     + Y  ++    ++G +  A+  F  M
Sbjct: 485 SYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRM 544

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                  DS TY +++  LCK  +L  A  L  + ++ G+
Sbjct: 545 SDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGL 584



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 144/283 (50%), Gaps = 5/283 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++ +M+ G CK      + R   G+ + GFV +  T +++++  C+ G +  A 
Sbjct: 198 VQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRAL 257

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W  +   + G  PN I +T +++   +    K   E+L  M  +G+  + + +  +I   
Sbjct: 258 WYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGL 317

Query: 126 VKIGRLKEATDYMEQMV-TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            K G  ++A     ++V ++  + ++++Y  +I+ YC++ K+  A +LL  M++QG   +
Sbjct: 318 CKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPN 377

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV-- 242
             T+T LIDG CKAGN + A   +  MN+ GF  N+  YN IVD L K G++  A  V  
Sbjct: 378 TNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLK 437

Query: 243 --FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             F +    D  TY+ ++   CK   +  A  L    +KSG++
Sbjct: 438 SGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQ 480



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 5/274 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA- 64
           L P    F  M+ GLCK      A  M   +   G+ P + T+  LI GLCK G    A 
Sbjct: 268 LRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAF 327

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R  LK +    H PN +TYT ++    R+ K      +LS MK +G   +   Y T+I  
Sbjct: 328 RLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDG 387

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G  + A + M  M  +G   ++ +YN +++  CK+G+++ AY +L    + G + D
Sbjct: 388 HCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDAD 447

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           K T+TILI   CK   IK A +    M K G   ++ +Y  ++    ++ ++  +   FE
Sbjct: 448 KVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFE 507

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
                  V  + TY+SM+   C+   L  A K  
Sbjct: 508 EAVRFGLVPTNKTYTSMICGYCREGNLRLALKFF 541



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 13/273 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+  +++G CK    + A  +   + + GF P + TYN ++ GLCK GR++ A 
Sbjct: 374 LAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAY 433

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LK    +G   + +TYT ++    +  + K  L + + M + G   D   Y T+IA F
Sbjct: 434 KVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVF 493

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  R+KE+  + E+ V  G+     +Y ++I  YC+EG L  A      M   G   D 
Sbjct: 494 CREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDS 553

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG---KDGKID---HA 239
            T+  LI GLCK   +  AR   + M + G         C V R+    +  KID    A
Sbjct: 554 ITYGALISGLCKQSKLDEARCLYDAMIEKGLTP------CEVTRVTLAYEYCKIDDGCSA 607

Query: 240 INVFESMEVKDSF-TYSSMVHNLCKAKRLPSAS 271
           + V E +E K    T +++V  LC  +++  A+
Sbjct: 608 MVVLERLEKKLWVRTVNTLVRKLCSERKVGMAA 640



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 17/291 (5%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY-TTIM 87
           A+ M   +   G  P   T N ++K + + G +  A  +  E+   G  PN ++Y   ++
Sbjct: 151 AIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVV 210

Query: 88  KCCFRNRKYKLG--LE---ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
             C      KLG  LE    L  M  +G+  D      ++  F + G +  A  Y  +  
Sbjct: 211 GYC------KLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFC 264

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
             G++ +++++  +I   CK G ++ A+ +L+EM  +G++ + YTHT LIDGLCK G  +
Sbjct: 265 EMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTE 324

Query: 203 GA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
            A RL L+ +       N+  Y  ++    +D K++ A  +   M+      ++ TY+++
Sbjct: 325 KAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTL 384

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +   CKA     A +L+    + G         A+VDGL   G  +EA K+
Sbjct: 385 IDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKV 435



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 115/250 (46%), Gaps = 5/250 (2%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           ++K   + GR++ A  ++ E+ + G AP+  T   ++K        +    +   M  +G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              +   Y  ++  + K+G + E+  ++  M+  G  +D  + + ++  +C++G +  A 
Sbjct: 198 VQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRAL 257

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
                  + G   +    T +I+GLCK G++K A   LE M   G+  N+  +  ++D L
Sbjct: 258 WYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGL 317

Query: 231 GKDGKIDHAINVFESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
            K G  + A  +F  +   ++      TY++M+   C+ +++  A  LL    + G+   
Sbjct: 318 CKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPN 377

Query: 286 KSAQKAVVDG 295
            +    ++DG
Sbjct: 378 TNTYTTLIDG 387



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 95/196 (48%), Gaps = 4/196 (2%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ +F +IGR+KEA + + +M   G+     + N ++ +  + G +E A  L DEM  +G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  ++ +++ G CK GN+  +   L  M + GF  +    + IV    + G +  A+
Sbjct: 198 VQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRAL 257

Query: 241 NVFE---SMEVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             F     M ++ +   ++ M+  LCK   +  A ++L   +  G +       A++DGL
Sbjct: 258 WYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGL 317

Query: 297 RHSGCRREAKKIQSKI 312
              G   +A ++  K+
Sbjct: 318 CKKGWTEKAFRLFLKL 333



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 3/176 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   ++  ++   C+ +    +   F    + G VP   TY  +I G C+ G 
Sbjct: 474 MVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGN 533

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR A      + D G A ++ITY  ++    +  K      +  AM  KG T       T
Sbjct: 534 LRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVT 593

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +   + KI     A   +E++     +L + + NTL+   C E K+  A L   ++
Sbjct: 594 LAYEYCKIDDGCSAMVVLERLEK---KLWVRTVNTLVRKLCSERKVGMAALFFHKL 646



 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   LTPC  T   +    CK     +A+ +   L+K  +V    T N L++ LC   +
Sbjct: 579 MIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVR---TVNTLVRKLCSERK 635

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98
           +  A     +L D     N +T    M  C+ + KY L
Sbjct: 636 VGMAALFFHKLLDKDPNVNRVTIAAFMTACYESNKYDL 673


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 146/300 (48%), Gaps = 10/300 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTAR 65
           P   ++NI+LNGLC    +  AL +   +   G    P++V+Y+ +I G  K G L    
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+ D   +PN +TY +I+    + +     +E+L+ M + G   D   Y +++  F
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 168

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+ KEA  ++++M +DGV+ D+V+YN+L++  CK G+   A  + D M K+G + + 
Sbjct: 169 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEI 228

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  L+ G    G +      L+ M + G   N   ++ +V    K  K++ A+ VF  
Sbjct: 229 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 288

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    ++ TY +++  LCK+ R+  A       +  G+    S    V + L H  C
Sbjct: 289 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL----SPGNIVYNSLIHGLC 344



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 152/307 (49%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++  LCK +  D A+ +   + K G +P+ +TYN ++ G C +G+ + A 
Sbjct: 119 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 178

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     +I  +M ++G   +   Y T++  +
Sbjct: 179 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGY 238

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ L+  Y K+ K+E A L+  +M +QG   + 
Sbjct: 239 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 298

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G ++ A L+ E M   G       YN ++  L    K + A  +   
Sbjct: 299 VTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILE 358

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    ++  ++S++ + CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 359 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 418

Query: 302 RREAKKI 308
             EA K+
Sbjct: 419 MDEATKL 425



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++ LCKN     A ++F  + K G  PE+ TY  L++G    G L    
Sbjct: 189 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 248

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G  PN   ++ ++    +  K +  + + S M+++G   +   Y  VI   
Sbjct: 249 GLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGIL 308

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+++A  Y EQM+ +G+    + YN+LI+  C   K E A  L+ EM  +G   + 
Sbjct: 309 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 368

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
                +ID  CK G +  +    + M +IG   ++  Y+ ++D     GK+D A  +  S
Sbjct: 369 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 428

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D  TYS++++  CK  R+  A  L      SGV         ++ GL  +  
Sbjct: 429 MVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRR 488

Query: 302 RREAKKI 308
              AK++
Sbjct: 489 TAAAKEL 495



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 151/312 (48%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    + A+ +F  +++ G  P  VTY  +I  LCK+GR
Sbjct: 254 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 313

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G +P  I Y +++       K++   E++  M  +G   +   + +
Sbjct: 314 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 373

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ DI++Y+TLI+ YC  GK++ A  LL  M   G
Sbjct: 374 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 433

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D  T++ LI+G CK   +K A +    M   G   ++  YN I+  L +  +   A 
Sbjct: 434 MKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 493

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + +S    +  TY+ ++H LCK K    A ++  +     +++       ++D L
Sbjct: 494 ELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDAL 553

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 554 LKVGRNDEAKDL 565



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 144/312 (46%), Gaps = 9/312 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   +++ ++NG  K    D     +  +      P +VTYN +I  LCKA  +  
Sbjct: 82  GDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDK 141

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  SG  P+ +TY +I+     + + K  +  L  M+  G   D   Y +++ 
Sbjct: 142 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 201

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ +I +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 202 YLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 261

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + Y  +IL+    K   ++ A L    M + G + N   Y  ++  L K G+++ A+  F
Sbjct: 262 NHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 321

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M        +  Y+S++H LC   +   A +L+L  L  G+ +      +++D    S
Sbjct: 322 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID----S 377

Query: 300 GCRREAKKIQSK 311
            C +E + I+S+
Sbjct: 378 HC-KEGRVIESE 388



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 43/297 (14%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +++  CK      + ++F  + + G  P+++TY+ LI G C AG++  A  +L 
Sbjct: 368 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLA 427

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+ +TY+T++                             GYC       KI 
Sbjct: 428 SMVSVGMKPDCVTYSTLIN----------------------------GYC-------KIS 452

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+K+A     +M + GV  DI++YN ++    +  +  AA  L   + K G + +  T+ 
Sbjct: 453 RMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYN 512

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA--YNCIVDRLGKDGKIDHAINVFESME 247
           I++ GLCK   +    L + + N    D  LEA  +N ++D L K G+ D A ++F +  
Sbjct: 513 IILHGLCK-NKLTDDALRM-FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFS 570

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               V + +TY  M  N+     L    +L LS   +G  +       +V  L   G
Sbjct: 571 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 627



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 132/295 (44%), Gaps = 20/295 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G C     D A ++   +   G  P+ VTY+ LI G CK  R++ A  +
Sbjct: 401 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVL 460

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+  SG +P+ ITY  I++  F+ R+     E+   + + G   +   Y  ++    K
Sbjct: 461 FREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCK 520

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                +A    + +    ++L+  ++N +I+   K G+ + A  L       G   + +T
Sbjct: 521 NKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWT 580

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI-NVFESM 246
           + ++      A NI G  L LE ++++    ++E   C VD     G ++  +  + +  
Sbjct: 581 YRLM------AENIIGQGL-LEELDQLFL--SMEDNGCTVD----SGMLNFIVRELLQRG 627

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV-----RILKSAQKAVVDGL 296
           E+  + TY SM+     +    +AS L +  L  G      R L    K+ ++ L
Sbjct: 628 EITRAGTYLSMIDEKHFSLEASTAS-LFIDLLSGGKYQEYHRFLPEKYKSFIESL 681



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYN 224
           E A  + DE+ ++G   D +++ IL++GLC     + A   L  M   G D   ++ +Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            +++   K+G +D   + +  M  +    +  TY+S++  LCKA+ +  A ++L + +KS
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 152

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           GV        ++V G   SG  +EA     K+R
Sbjct: 153 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMR 185



 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL     TFNIM++ L K    D A  +F     +G VP   TY ++ + +   G L   
Sbjct: 538 DLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEEL 597

Query: 65  RWILKELGDSG 75
             +   + D+G
Sbjct: 598 DQLFLSMEDNG 608


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 8/308 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  +LNGLCK   T  A+++ R ++     P +V Y+ +I GLCK   +  A  +  E
Sbjct: 116 VSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSE 175

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLG-LEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +      PN ITY T++ C F      +G   +L  M  K    D + +  +I A  K G
Sbjct: 176 MDAREIFPNVITYNTLI-CAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG 234

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
             K A      MV  GV  ++ SYN +IN  CK  +++ A  LL EM  +    D  T+ 
Sbjct: 235 --KNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYN 292

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LIDGLCK+G I  A   +  M+  G  +++  Y  ++D L K+  +D A  +F  M+ +
Sbjct: 293 SLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKER 352

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                 +TY++++  LCK  RL +A +L    L  G  I       ++ GL   G   EA
Sbjct: 353 GIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEA 412

Query: 306 KKIQSKIR 313
             I+SK+ 
Sbjct: 413 LAIKSKME 420



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 6/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+  ++ GLC        L     +    F    V+Y  L+ GLCK G  R A  +
Sbjct: 78  PNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKL 137

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ + D    PN + Y+ I+    +++      ++ S M  +    +   Y T+I AF  
Sbjct: 138 LRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCL 197

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L  A   + +M+   +  D+ +++ LI+  CKEGK   A  +   M + G   + Y+
Sbjct: 198 AGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYS 255

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           + I+I+GLCK   +  A   L  M       +   YN ++D L K G+I  A+N+   M 
Sbjct: 256 YNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMH 315

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
              +  D  TY+S++  LCK + L  A+ L +   + G++       A++DGL   G  +
Sbjct: 316 HRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLK 375

Query: 304 EAKKI 308
            A+++
Sbjct: 376 NAQEL 380



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 142/301 (47%), Gaps = 41/301 (13%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L  L K +Y    + + + +   G    LVT +ILI   C  G++  +  +L ++ 
Sbjct: 13  FNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKIL 72

Query: 73  DSGHAPNAITYTTIMK-CCFRNRKYKL--------------------------------- 98
             G+ PN IT+TT+MK  C +    KL                                 
Sbjct: 73  KLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETR 132

Query: 99  -GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             +++L  ++ +    +   Y  +I    K   + EA D   +M    +  ++++YNTLI
Sbjct: 133 CAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLI 192

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
             +C  G+L  A+ LL EM  +    D YT +ILID LCK G  K A+     M ++G +
Sbjct: 193 CAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMGVN 250

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
            N+ +YN +++ L K  ++D A+N+   M     V D+ TY+S++  LCK+ R+ SA  L
Sbjct: 251 PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNL 310

Query: 274 L 274
           +
Sbjct: 311 M 311



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 3/219 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   ++NIM+NGLCK +  D A+ + R +     VP+ VTYN LI GLCK+GR
Sbjct: 244 MVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGR 303

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A  ++ E+   G   + +TYT+++    +N+       +   MK +G     + Y  
Sbjct: 304 ITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTA 363

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GRLK A +  + ++  G  +D+ +Y  +I+  CKEG  + A  +  +ME  G
Sbjct: 364 LIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNG 423

Query: 181 FECDKYTHTILIDGLC-KAGNIKGARLHLEYMNK--IGF 216
              +  T  I+I  L  K  N K  +L  E + K  +GF
Sbjct: 424 CIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLGF 462



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 122/249 (48%), Gaps = 2/249 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TF+I+++ LCK     NA ++F  + + G  P + +YNI+I GLCK  R
Sbjct: 211 MILKNINPDVYTFSILIDALCKE--GKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKR 268

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+E+      P+ +TY +++    ++ +    L +++ M  +G   D   Y +
Sbjct: 269 VDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTS 328

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K   L +AT    +M   G+Q  + +Y  LI+  CK G+L+ A  L   +  +G
Sbjct: 329 LLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 388

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T+T++I GLCK G    A      M   G   N   +  I+  L +  + D A 
Sbjct: 389 CCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAE 448

Query: 241 NVFESMEVK 249
            +   M  K
Sbjct: 449 KLLHEMIAK 457



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 108/237 (45%), Gaps = 6/237 (2%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           H    I +  I+    + + Y   + +   M  KG   +      +I  F  +G++  + 
Sbjct: 6   HTSPIIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSF 65

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             + +++  G   + +++ TL+   C +G+++      D++  Q F+ ++ ++  L++GL
Sbjct: 66  SLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGL 125

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF--- 252
           CK G  + A   L  +       N+  Y+ I+D L KD  ++ A +++  M+ ++ F   
Sbjct: 126 CKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNV 185

Query: 253 -TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            TY++++   C A +L  A  LL   +   +         ++D L   G  + AK+I
Sbjct: 186 ITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQI 240


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 156/320 (48%), Gaps = 7/320 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKAG 59
           MI   L P + TFN +L  L K+ + + A R+F   +  G V  ++ ++ I+IKG C+ G
Sbjct: 108 MIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFN--ETKGNVKLDVYSFGIMIKGCCEVG 165

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            L     +L ++ + G +PN + YTT++  C +N   + G ++   M       + + Y 
Sbjct: 166 YLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYT 225

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I  F K+G  K+  +  E+M   G+  ++ +YN++I   C +GKL  A+ L DEM ++
Sbjct: 226 VLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRER 285

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G  C+  T+  LI GLC+   +  A   +  M + G   NL +YN ++D     G +D A
Sbjct: 286 GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 345

Query: 240 INVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            ++F  M    +     TY+ ++    +AK     + ++      G+   K     ++D 
Sbjct: 346 SSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDA 405

Query: 296 LRHSGCRREAKKIQSKIRMA 315
           L  S    +A +I S +  A
Sbjct: 406 LVRSDNIEKAFQIYSSMEKA 425



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 8/284 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M+   C +   +NA  +F  +++ G    +VTYN LI GLC+  R+  A 
Sbjct: 252 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAE 311

Query: 66  WILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            ++  +   G +PN I+Y T++   C   N      L   + MK  G +     Y  +IA
Sbjct: 312 RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSL--FNQMKSSGQSPSLATYNILIA 369

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F +       TD + +M   G+    V+Y  L++   +   +E A+ +   MEK G   
Sbjct: 370 GFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVA 429

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D Y + +LI GLC  G++K A    + ++++    N   YN ++    K+G    A+ + 
Sbjct: 430 DIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLL 489

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           + M     V +  +Y+S +  LCK ++   A  LL   ++ G++
Sbjct: 490 KEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLK 533



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 110/221 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   ++N +++G C     D A  +F  ++  G  P L TYNILI G  +A       
Sbjct: 322 LSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVT 381

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++E+   G +P+ +TYT +M    R+   +   +I S+M++ G   D + Y  +I   
Sbjct: 382 DMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGL 441

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +G +KEA+   + +    ++ + V YNT+I  YCKEG    A  LL EM + G   + 
Sbjct: 442 CVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNV 501

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
            ++   I  LCK      A + L+ M ++G   ++  +N I
Sbjct: 502 ASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 4/177 (2%)

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V+LD+ S+  +I   C+ G L+  + +L +ME+ G   +   +T LIDG CK G+I+  +
Sbjct: 147 VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGK 206

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
                M ++   +N   Y  +++   K G     I ++E M+    V + +TY+SM+   
Sbjct: 207 QLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRC 266

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           C   +L +A +L     + GV         ++ GL       EA+++  +++   +S
Sbjct: 267 CNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLS 323



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N M+ G CK   +  ALR+ + + ++G VP + +YN  I  LCK  +   A 
Sbjct: 462 LKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAE 521

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRN 93
            +LK++ + G  P+   +  I K  F N
Sbjct: 522 VLLKDMIELGLKPSISIWNMISKARFDN 549


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 153/296 (51%), Gaps = 11/296 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N++  GLCK    D AL +F  ++++  VP L+TYN L+ G C+AGR+  A  +L+E+
Sbjct: 143 SYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEM 202

Query: 72  --GDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             G  G    P+  +Y T++    + R+      +L  M + G + +   + T++     
Sbjct: 203 IEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCL 262

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L EA    E MV    +   V+Y  LI  + +  +++ A     +M ++G E + YT
Sbjct: 263 TGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYT 322

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ESM 246
           +T LI GLC A  ++ A   L+ M+  G + N+  Y  ++  L K G+I+ A  +F ++M
Sbjct: 323 YTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAM 382

Query: 247 EVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             +      DS+ YS++++ LC+  +   A +  L  ++S +       KA+ DGL
Sbjct: 383 GSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGL 438



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 9/300 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D      T+N  LN L K  +   A ++F  +     +P + TY I+++GLC   +   A
Sbjct: 32  DFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAA 91

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+++      P       ++ C  +N K     E+   +  +  + D   Y  +   
Sbjct: 92  LELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDEC-SLDRISYNMLTYG 150

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM--EKQGFE 182
             K  ++  A     +M  + V   +++YN L+  YC+ G++E A  LL+EM   K+G +
Sbjct: 151 LCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSD 210

Query: 183 C--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D Y++  +I G CKA  +  AR  L  M K G   N+  +N ++D L   GK+D A 
Sbjct: 211 VVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEAN 270

Query: 241 NVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +FE M  ++    + TY+ ++    +A R+  A+   +  L+ GV        A++ GL
Sbjct: 271 AMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGL 330



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 134/307 (43%), Gaps = 37/307 (12%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            D+ P   ++N +++G CK R    A  + R + K G  P +VT+N L+ GLC  G+L  
Sbjct: 209 SDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDE 268

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + + + +    P A+TYT ++    R  +     +    M R+G   + + Y  +I 
Sbjct: 269 ANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIG 328

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE-AAYLLLDEMEKQGFE 182
                 ++++A + +++M + G + ++V+Y  +I   CK G++E A  L  D M  +  +
Sbjct: 329 GLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAK 388

Query: 183 C--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           C  D Y ++ +I  LC+                      LEAY             ++ +
Sbjct: 389 CKPDSYAYSTIIYWLCRQSKF------------------LEAY-------------EYFL 417

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            + ES  V     Y +M   L   + +    K+   CL++    ++  QK     L    
Sbjct: 418 RMVESKLVAKPHIYKAMADGL---ELVQETEKVERVCLEASAHGIELQQKDAPQPLNPHL 474

Query: 301 CRREAKK 307
            RR+A+K
Sbjct: 475 PRRKARK 481



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 3/198 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    +P   TFN +L+GLC     D A  MF  + +    P  VTY +LI G  +A R
Sbjct: 241 MIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALR 300

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     ++   G  PN  TYT ++       K +  LEIL  M   G   +   Y  
Sbjct: 301 IDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTR 360

Query: 121 VIAAFVKIGRLKEATDYMEQMV---TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           VI A  K G+++ AT      +   T   + D  +Y+T+I   C++ K   AY     M 
Sbjct: 361 VIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMV 420

Query: 178 KQGFECDKYTHTILIDGL 195
           +       + +  + DGL
Sbjct: 421 ESKLVAKPHIYKAMADGL 438



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           A +++ +    F Y   + A VK G   +A    + M+      +I +Y  ++   C + 
Sbjct: 27  AARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDA 86

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE--A 222
           K +AA  LL +ME +      +   +L+  LCK G +  A    E   ++  + +L+  +
Sbjct: 87  KTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAA---YELYKRLSDECSLDRIS 143

Query: 223 YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           YN +   L K  +ID A+ VF  ME    V    TY+ +++  C+A R+  A  LL
Sbjct: 144 YNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLL 199


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 149/315 (47%), Gaps = 4/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +LN   K     +ALR+   ++K+G   +L TYNI+I  LCK  R   A  +
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK + +    P+  +Y T++   F   K  L + I + M R+        Y  +I  + +
Sbjct: 322 LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCR 381

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  EA   + +M   GV+   ++Y+ L+N YCK  KL  A  L+  +  +    ++  
Sbjct: 382 NGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTM 441

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +TILIDG C+ G +  A+  L+ M   G D ++  Y+ +++ + K G I     +   M+
Sbjct: 442 YTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQ 501

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + ++  Y+++V   CKA     A K  +   +SG+        A++      G   
Sbjct: 502 KSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIA 561

Query: 304 EAKKIQSKIRMAKIS 318
           EA++ +  +   KIS
Sbjct: 562 EAEQFKQYMSRMKIS 576



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 156/340 (45%), Gaps = 39/340 (11%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +LTP   ++N +++G       + A+ +F  + +    P + TY  LI G C+ GR   A
Sbjct: 329 NLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEA 388

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +L E+  +G  P+ +TY+ ++    ++ K    L+++  ++ +  + +   Y  +I  
Sbjct: 389 RRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDG 448

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F ++G + +A   ++ M+ DG+  D+++Y+ LIN  CK G +     +L  M+K G   +
Sbjct: 449 FCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPN 508

Query: 185 KYTHTILIDGLCKAGNIKGARLHL-----------------------------------E 209
              +T L+   CKAG+ K A  +                                    +
Sbjct: 509 NVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQ 568

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAK 265
           YM+++    ++ ++NCI+D   + G +  A +V+++M       D  TY S++  LC+  
Sbjct: 569 YMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGG 628

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            L  A + ++  L+    I +     ++ G+   G   EA
Sbjct: 629 HLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEA 668



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 153/304 (50%), Gaps = 4/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           + I+++G C+      A ++ + +   G  P+++TY+ LI G+CK G +   + IL  + 
Sbjct: 442 YTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQ 501

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  PN + YTT++    +    K  L+    + R G   +   +  ++ +F + G + 
Sbjct: 502 KSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIA 561

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA  + + M    +  D+ S+N +I+ YC+ G +  A+ + D M + G+  D  T+  L+
Sbjct: 562 EAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLL 621

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            GLC+ G++  A+  + Y+ +     + +  N ++  + K G +D A+++ E M  +   
Sbjct: 622 RGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNIL 681

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D++TY+ ++   CK  ++  A  LL   L+ G+     A   +++GL + G  + A  +
Sbjct: 682 PDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYM 741

Query: 309 QSKI 312
             +I
Sbjct: 742 FQEI 745



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 23/293 (7%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T N +L G+CK+   D AL +   +     +P+  TY IL+ G CK G++  A  +L+ +
Sbjct: 651 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMM 710

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-RKGYTFDGFGYCTVIAAFVKIGR 130
            + G  P+ I YT ++       + K    +   +  ++G   D   Y +++  ++K G+
Sbjct: 711 LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQ 770

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + E    M  M  + V     SYN L++ Y K+G+L     L  +M K+G + D  T+ +
Sbjct: 771 INEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRL 830

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           LI GLC+ G I+ A   LE M   G F  NL A++ ++    +  K+ +A+ +F  M+  
Sbjct: 831 LIFGLCEYGLIEIAVKFLEKMVLEGVFPDNL-AFDILIKAFSEKSKMSNALQLFSYMKWV 889

Query: 248 ------------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                             V      SS+V  LCK  ++  A  +  S +++G+
Sbjct: 890 GDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGM 942



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 134/283 (47%), Gaps = 11/283 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+T C    NI+LN LC       A  M + + K+  +P  VTYN ++    K GR ++A
Sbjct: 229 DVTTC----NIVLNSLCTQGKLSKAESMLQKM-KNCRLPNAVTYNTILNWYVKKGRCKSA 283

Query: 65  RWILKELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             IL ++  +G   +  TY  ++ K C   R  +  L +L  M+    T D   Y T+I 
Sbjct: 284 LRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYL-LLKRMREVNLTPDECSYNTLIH 342

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F   G++  A     QM+   ++  + +Y  LI+ YC+ G+ + A  +L EM+  G   
Sbjct: 343 GFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRP 402

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
            + T++ L++G CK   +  A   ++Y+       N   Y  ++D   + G++  A  + 
Sbjct: 403 SELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQIL 462

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + M       D  TYS++++ +CK   +    ++L    KSGV
Sbjct: 463 KCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGV 505



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 143/304 (47%), Gaps = 5/304 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +LN L     ++      +      F  ++ T NI++  LC  G+L  A  +L+++ +
Sbjct: 199 NNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKN 258

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
               PNA+TY TI+    +  + K  L IL  M++ G   D + Y  +I    K+ R   
Sbjct: 259 C-RLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSAR 317

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +++M    +  D  SYNTLI+ +  EGK+  A  + ++M +Q  +    T+T LID
Sbjct: 318 AYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALID 377

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
           G C+ G    AR  L  M   G   +   Y+ +++   K  K+  A+++ + +  +    
Sbjct: 378 GYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISI 437

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           +   Y+ ++   C+   +  A ++L   L  G+        A+++G+   G   E K+I 
Sbjct: 438 NRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEIL 497

Query: 310 SKIR 313
           S+++
Sbjct: 498 SRMQ 501



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 134/314 (42%), Gaps = 40/314 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++ ++NG+CK         +   +QK G +P  V Y  L+   CKAG 
Sbjct: 465 MLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGH 524

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A     ++  SG   N++ +  ++   +R        +    M R   +FD   +  
Sbjct: 525 AKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNC 584

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY--------------------------- 153
           +I ++ + G + EA    + MV  G   DI +Y                           
Sbjct: 585 IIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKA 644

Query: 154 --------NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                   NTL+   CK G L+ A  L ++M  +    D YT+TIL+DG CK G +  A 
Sbjct: 645 CAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPAL 704

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHN 260
           + L+ M + G   +  AY C+++ L  +G++  A  +F+ +  K     D   Y+SM++ 
Sbjct: 705 ILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNG 764

Query: 261 LCKAKRLPSASKLL 274
             K  ++    +L+
Sbjct: 765 YLKGGQINEIERLM 778



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 16/259 (6%)

Query: 5    DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
            ++ P +A++NI+++G  K       L ++R + K G  P+ VTY +LI GLC+ G +  A
Sbjct: 785  EVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIA 844

Query: 65   RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF-------- 116
               L+++   G  P+ + +  ++K      K    L++ S MK  G     F        
Sbjct: 845  VKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKA 904

Query: 117  --------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
                       +++    K G+++EA      ++  G+   I ++ TL++  CKE K++ 
Sbjct: 905  LGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDD 964

Query: 169  AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
            A+ L   ME  G + D  T+ +LI GLC    I  A    E M   G   N+  Y  +  
Sbjct: 965  AFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTG 1024

Query: 229  RLGKDGKIDHAINVFESME 247
             +   G +     + + +E
Sbjct: 1025 AMYATGTMQDGEKLLKDIE 1043



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 141/329 (42%), Gaps = 59/329 (17%)

Query: 29  ALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT--- 84
           ALRM   + Q+ G       Y + +  L +A     A  +L+ L  +G + +AI  +   
Sbjct: 91  ALRMLDSIVQQSGLDRITHIYCMAVHILVQAQMPSQAMSVLRHLALTGFSCSAIFSSLLR 150

Query: 85  TIMKC---------CFRNRKYKLGLEILSA------MKRKGYTFDGFGYCTVIAAFVKIG 129
           TI +C            N   K G ++L A      M   G+    F    ++ A V I 
Sbjct: 151 TISRCDPTNLFSVDLLVNAYVKEG-KVLDAAAAIFFMDECGFKASLFSCNNILNALVGIN 209

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL----------------------- 166
           + +    ++++ +     LD+ + N ++N  C +GKL                       
Sbjct: 210 KSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNT 269

Query: 167 -----------EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
                      ++A  +LD+MEK G E D YT+ I+ID LCK      A L L+ M ++ 
Sbjct: 270 ILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVN 329

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDSF-TYSSMVHNLCKAKRLPSAS 271
              +  +YN ++     +GKI+ AI +F  M    +K S  TY++++   C+  R   A 
Sbjct: 330 LTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEAR 389

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGL-RHS 299
           ++L     +GVR  +    A+++G  +HS
Sbjct: 390 RVLYEMQITGVRPSELTYSALLNGYCKHS 418



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 17/204 (8%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMF----------------RGLQKHGFVPE 44
            M+   + P    F+I++    +     NAL++F                  ++  G VP 
Sbjct: 851  MVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPS 910

Query: 45   LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
             V  + +++GLCK G++  A  +   +  +G  P   T+TT+M    +  K      +  
Sbjct: 911  EVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQ 970

Query: 105  AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
             M+  G   D   Y  +I        + +A D  E+M + G+  +I +Y TL       G
Sbjct: 971  LMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATG 1030

Query: 165  KLEAAYLLLDEMEKQGFECDKYTH 188
             ++    LL ++E +G     Y H
Sbjct: 1031 TMQDGEKLLKDIEDRGI-VPSYKH 1053


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 15/283 (5%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   TF+I+++G C  +  D+ +++   + + G V   +TY  LI G C+ G L  A  
Sbjct: 385 SPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALD 444

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF---------- 116
           +L+E+  SG  PN +T  T++     N K K  LE+   M++     D            
Sbjct: 445 LLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDV 504

Query: 117 -GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
             Y  +I   +  G+  EA +  E+M   G+  D ++YN++I+  CK+ +L+ A  + D 
Sbjct: 505 QTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDS 564

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M  +GF  D  T T LI+G CK G +         M + G  +N   Y  ++    + G 
Sbjct: 565 MGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGN 624

Query: 236 IDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           I+ A+++F+ M       D+ T  +M+  L   + L  A + L
Sbjct: 625 INGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 145/321 (45%), Gaps = 50/321 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ +++GL K+    +A  +F  +Q+ G  P L TYN +I G C +GR   A+
Sbjct: 244 IKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQ 303

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ +   +P+ +T++ ++    +  K+    E+ + M  +G   +   Y ++I  F
Sbjct: 304 RLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGF 363

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  RL  A      M T G   D+++++ LI+ YC   +++    LL EM ++G   + 
Sbjct: 364 SKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANT 423

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI G C+ GN+  A   L+ M   G   N+   N ++D L  +GK+  A+ +F+ 
Sbjct: 424 ITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKV 483

Query: 246 ME--------------------------------------------------VKDSFTYS 255
           M+                                                  V D+ TY+
Sbjct: 484 MQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYN 543

Query: 256 SMVHNLCKAKRLPSASKLLLS 276
           S++  LCK  RL  A+++  S
Sbjct: 544 SVIDGLCKQSRLDEATQMFDS 564



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 151/315 (47%), Gaps = 5/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F  ++NGLC+      A+ +   + + G  P  +TY  ++ G+CK G   +A  +
Sbjct: 175 PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 234

Query: 68  LKELGD-SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L+++ + S   PN + Y+ I+   +++ +      + S M+ KG + + F Y  +I  F 
Sbjct: 235 LRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFC 294

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             GR  EA   + +M    +  D+V+++ LIN   KEGK   A  L +EM  +G   +  
Sbjct: 295 SSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTI 354

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  +IDG  K   +  A      M   G   ++  ++ ++D      ++D  + +   M
Sbjct: 355 TYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEM 414

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                V ++ TY++++H  C+   L +A  LL   + SGV         ++DGL ++G  
Sbjct: 415 SRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKL 474

Query: 303 REAKKIQSKIRMAKI 317
           ++A ++   ++ +K+
Sbjct: 475 KDALEMFKVMQKSKM 489



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 136/297 (45%), Gaps = 15/297 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T T+N M++G  K    D A RMF  +   G  P+++T++ILI G C A R
Sbjct: 344 MLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKR 403

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E+   G   N ITYTT++    +       L++L  M   G   +     T
Sbjct: 404 VDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNT 463

Query: 121 VIAAFVKIGRLKEATDYMEQM-----------VTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           ++      G+LK+A +  + M             + V+ D+ +YN LI     EGK   A
Sbjct: 464 LLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEA 523

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             L +EM  +G   D  T+  +IDGLCK   +  A    + M   GF  ++  +  +++ 
Sbjct: 524 EELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLING 583

Query: 230 LGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             K G++   + VF  M     V ++ TY +++H  C+   +  A  +    + SGV
Sbjct: 584 YCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGV 640



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 10/273 (3%)

Query: 8   PCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           PC   +F I++   C       AL  F  + K GF P LVT++ L+ GLC   R+  A  
Sbjct: 108 PCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALH 167

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              ++      PN I +TT+M    R  +    + +L  M   G   +   Y T++    
Sbjct: 168 FFHQIC----KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 223

Query: 127 KIGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           K+G    A + + +M     ++ ++V Y+ +I+   K+G+   A  L  EM+++G   + 
Sbjct: 224 KMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNL 283

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  +I+G C +G    A+  L  M +     ++  ++ +++ L K+GK   A  ++  
Sbjct: 284 FTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNE 343

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     + ++ TY+SM+    K  RL +A ++ 
Sbjct: 344 MLPRGIIPNTITYNSMIDGFSKQNRLDAAERMF 376



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 11/215 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK--------HGF---VPELVTYN 49
           MI   + P   T N +L+GLC N    +AL MF+ +QK        H F    P++ TYN
Sbjct: 449 MISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYN 508

Query: 50  ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           ILI GL   G+   A  + +E+   G  P+ ITY +++    +  +     ++  +M  K
Sbjct: 509 ILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSK 568

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           G++ D   + T+I  + K+GR+ +  +   +M   G+  + ++Y TLI+ +C+ G +  A
Sbjct: 569 GFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGA 628

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
             +  EM   G   D  T   ++ GL     +K A
Sbjct: 629 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 663



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 132/295 (44%), Gaps = 11/295 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC   F  +L  + +    D  + + R ++       + ++ ILIK  C   +L  A   
Sbjct: 74  PCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALST 133

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
             ++   G  P+ +T++T++   C  +R  +  L     + +         + T++    
Sbjct: 134 FGKITKLGFHPSLVTFSTLLHGLCVEDRVSE-ALHFFHQICKPNV----IAFTTLMNGLC 188

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDK 185
           + GR+ EA   +++MV DG+Q + ++Y T+++  CK G   +A  LL +ME+    + + 
Sbjct: 189 REGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNV 248

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----N 241
             ++ +IDGL K G    A+     M + G   NL  YNC+++     G+   A      
Sbjct: 249 VIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLRE 308

Query: 242 VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +FE     D  T+S +++ L K  +   A +L    L  G+        +++DG 
Sbjct: 309 MFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGF 363



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 19/211 (9%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           +C ++   V++ R         +M    +  +I S+  LI  +C   KL  A     ++ 
Sbjct: 79  FCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKIT 138

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           K GF     T + L+ GLC    +  A   L + ++I    N+ A+  +++ L ++G++ 
Sbjct: 139 KLGFHPSLVTFSTLLHGLCVEDRVSEA---LHFFHQI-CKPNVIAFTTLMNGLCREGRVV 194

Query: 238 HAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLL-----LSCLKSGVRILKS 287
            A+ + + M V+D       TY ++V  +CK     SA  LL     +S +K  V I   
Sbjct: 195 EAVALLDRM-VEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIY-- 251

Query: 288 AQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
              A++DGL   G + +A+ + S+++   IS
Sbjct: 252 --SAIIDGLWKDGRQTDAQNLFSEMQEKGIS 280



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 81/174 (46%)

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + F +I  L +A D    MV       ++ +  L+ +  +  + +    L  +ME +   
Sbjct: 49  SGFHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIP 108

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           C+ Y+ TILI   C    +  A      + K+GF  +L  ++ ++  L  + ++  A++ 
Sbjct: 109 CNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHF 168

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           F  +   +   ++++++ LC+  R+  A  LL   ++ G++  +     +VDG+
Sbjct: 169 FHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 222


>gi|125606474|gb|EAZ45510.1| hypothetical protein OsJ_30168 [Oryza sativa Japonica Group]
          Length = 651

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 154/338 (45%), Gaps = 43/338 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTA 64
           + P    +N +L+GL      D A+ +F  +     V P++V+YNILIKG C+AGR   A
Sbjct: 263 VEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDA 322

Query: 65  RWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY------------ 111
              L E+ +     P+ +TY T+M+C +    + + + +   M+ +G             
Sbjct: 323 MARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLV 382

Query: 112 ---------TFDGFG----------------YCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                     F+G                  Y  +I +  K GR KEA    E+M   G+
Sbjct: 383 IGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGL 442

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           +LD V+Y  ++N  C+ GKL+ A       +++G   +   +T LIDG  KAG +  ++ 
Sbjct: 443 KLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKE 502

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             E M   GF  +   YN ++D L K G++D A  +++ ME     +  +TY+ ++  L 
Sbjct: 503 LFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLF 562

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           K  +   A K   + +  G+    +A + +  GL  SG
Sbjct: 563 KEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSG 600



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            + +++  LCK+      + +F  + K G       Y  LI  + K GR + A  + + +
Sbjct: 378 AYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERM 437

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            DSG   +++TY  I+ C  R  K    +    + + KG   +   Y ++I  F K G +
Sbjct: 438 KDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMV 497

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            ++ +  E+M+  G   D   YN LI+   K G+++ A  L   ME  G +   YT+TIL
Sbjct: 498 DQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTIL 557

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SMEV 248
           IDGL K    + A    + M   G      A+  +   L   GK   A  + +    M V
Sbjct: 558 IDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGV 617

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKL 273
                +  M++ LCKA R   A KL
Sbjct: 618 IPETAHEDMINVLCKAGRFKQACKL 642



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 43/247 (17%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKE 163
           AM+  G       Y  ++   V  G L  A +  + M T D V+ D+VSYN LI  YC+ 
Sbjct: 257 AMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRA 316

Query: 164 GKLEAAYLLLDEMEKQ--------------------------------------GFECDK 185
           G+   A   L EM++Q                                      G +  +
Sbjct: 317 GRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQ 376

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + + ++I  LCK G         E M K G  +N   Y  ++D +GK G+   A+ +FE 
Sbjct: 377 HAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFER 436

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      DS TY  +V+ LC+  +L  A     SC + G+ +      +++DG   +G 
Sbjct: 437 MKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGM 496

Query: 302 RREAKKI 308
             ++K++
Sbjct: 497 VDQSKEL 503



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 36/174 (20%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P +  +N++++GL K+   D+A  +++ ++  G    + TY ILI GL     
Sbjct: 507 MIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGL----- 561

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                                         F+  K +  L+   AM  KG T     + T
Sbjct: 562 ------------------------------FKEHKNEEALKFWDAMIDKGITPTAAAFRT 591

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           + +     G+   A   ++++   GV +   ++  +IN+ CK G+ + A  L D
Sbjct: 592 LASGLCLSGKFSRACRILDELAPMGV-IPETAHEDMINVLCKAGRFKQACKLAD 644


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 136/287 (47%), Gaps = 5/287 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG 59
            M+     P   T   +++GLCK  +T+ A R+F  L +   + P + TY  +I G CK  
Sbjct: 914  MVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKED 973

Query: 60   RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            +L  A  +   + + G  PN  TYTT++    +   +    E+++ M  +G+  + + Y 
Sbjct: 974  KLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYN 1033

Query: 120  TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
              I +  K  R  EA + + +  + G++ D V+Y  LI   CK+  +  A      M K 
Sbjct: 1034 AAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKT 1093

Query: 180  GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            GFE D   + ILI   C+   +K +    + +  +G     E Y  ++    K+G ID A
Sbjct: 1094 GFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLA 1153

Query: 240  INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +  F +M+    V DSFTY S++  LCK   +  A KL  + +  G+
Sbjct: 1154 LKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGL 1200



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 140/276 (50%), Gaps = 5/276 (1%)

Query: 4    GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            G+L         ML    +    + A+ M   +Q  G  P  +T N +++   + G +  
Sbjct: 742  GNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEY 801

Query: 64   ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            A  +  E+   G  P++ +Y  ++  CFR+ K +     L+ M ++G+  D      ++ 
Sbjct: 802  AENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILT 861

Query: 124  AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            A  + G +  A  Y  +M+  G + +++++ +LI+  CK+G ++ A+ +L+EM + G++ 
Sbjct: 862  ALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKP 921

Query: 184  DKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            + YTHT LIDGLCK G  + A RL L+ +    +  N+  Y  ++    K+ K++ A  +
Sbjct: 922  NVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEML 981

Query: 243  FESMEVKDSF----TYSSMVHNLCKAKRLPSASKLL 274
            F  M+ +  F    TY+++++  CKA     A +L+
Sbjct: 982  FSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELM 1017



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 33/229 (14%)

Query: 3    CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
            CG L     T+ I++   CK    + AL  F  + K GF  ++   NILI   C+  +++
Sbjct: 1058 CG-LEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMK 1116

Query: 63   TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
             +  + + +   G  P   TYT+++ C  +     L L+    MKR G   D F Y ++I
Sbjct: 1117 ESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLI 1176

Query: 123  AAFVKIGRLKEATDYMEQMVTDGV--------------------------------QLDI 150
            +   K   + EA    E M+  G+                                +L I
Sbjct: 1177 SGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWI 1236

Query: 151  VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
             +  TL+   C E K+  A L   ++ ++    D+ T         ++G
Sbjct: 1237 RTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESG 1285



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 4/188 (2%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F +IGRL EA   +  M   G+    ++ N ++ +  + G +E A  + DEM  +G   D
Sbjct: 758 FSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPD 817

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++ +++ G  + G I+ A   L  M + GF  +      I+  L ++G ++ AI  F 
Sbjct: 818 SSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFR 877

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       +   ++S++  LCK   +  A ++L   +++G +       A++DGL   G
Sbjct: 878 KMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRG 937

Query: 301 CRREAKKI 308
              +A ++
Sbjct: 938 WTEKAFRL 945


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 151/316 (47%), Gaps = 8/316 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFN ++ G C+    D A  +F  +   GF  ++V+Y  LI+GLC+AGR
Sbjct: 179 MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 238

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+      P+   Y  ++K      + + GL +L  MK  G+      Y  
Sbjct: 239 IDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 294

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+    +  + KEA + +++M   G+   +V+   +IN YCKEG++  A  +L+ M+ +G
Sbjct: 295 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 354

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + + +T+  L+ G C  G +  A   L  M   G + +   YN ++     DG I+ A 
Sbjct: 355 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAF 414

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME    + D +TY+++++ LCK  R   A  L  S    G++       ++++GL
Sbjct: 415 RLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 474

Query: 297 RHSGCRREAKKIQSKI 312
             SG    A K   K+
Sbjct: 475 CKSGKADIAWKFLEKM 490



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 4/262 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +  ++ GLC     +  L M R +++ G+ P    Y  ++   C+  + + A  +
Sbjct: 252 PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEM 311

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+ + G AP  +T T ++    +  +    L +L  MK +G   + + Y  ++  F  
Sbjct: 312 LQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCN 371

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ +A   + +M   GV  D V+YN LI   C +G +E+A+ LL  ME  G   D+YT
Sbjct: 372 EGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYT 431

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+ LCK G    A    + +   G   N   +N +++ L K GK D A    E M 
Sbjct: 432 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMV 491

Query: 248 ----VKDSFTYSSMVHNLCKAK 265
                 D++TYSS + +LCK K
Sbjct: 492 SAGCTPDTYTYSSFIEHLCKMK 513



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 5/267 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG + P   T+N+++ G C + + ++A R+ R ++  G + +  TYN LI  LCK GR  
Sbjct: 388 CG-VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTD 446

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +   L   G  PNA+T+ +++    ++ K  +  + L  M   G T D + Y + I
Sbjct: 447 QACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI 506

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K+   +E   ++ +M+   V+   V+Y  +I+   KE           EM   G  
Sbjct: 507 EHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCN 566

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+T  +   C  G +  A   L  M+K G   +  AYN ++D     G+ DHA+++
Sbjct: 567 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSI 626

Query: 243 FESM----EVKDSFTYSSMVHNLCKAK 265
            + M     V + FTY  ++ +L + +
Sbjct: 627 LKQMTSVASVPNQFTYFILLRHLVRMR 653



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 150/354 (42%), Gaps = 58/354 (16%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++N LCK+  TD A  +F  L+  G  P  VT+N LI GLCK+G+   A   L+++
Sbjct: 431 TYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKM 490

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  P+  TY++ ++   + +  + GL  +  M +K        Y  VI   +K    
Sbjct: 491 VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNY 550

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
                   +MV+ G   D+V+Y T +  YC EG+L  A  +L EM K G   D   +  L
Sbjct: 551 GLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTL 610

Query: 192 IDG-----------------------------------------------LCKAGNIKGA 204
           +DG                                               L  AG  K  
Sbjct: 611 MDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI 670

Query: 205 RLH-----LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT-----Y 254
            L       + M K  F  N   Y+ I++   +DG+ + A ++   M+ +DS +     Y
Sbjct: 671 ELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMK-EDSISLNEDIY 729

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +++V   CK+KR   A  L+ S ++ G      + + ++ GL   G   +AK+I
Sbjct: 730 TALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEI 783



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 4/262 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  +  +++  C+ R    A  M + + + G  P +VT   +I   CK GR+  A  +
Sbjct: 287 PSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 346

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +   G  PN  TY  +++      K    + +L+ M+  G   D   Y  +I     
Sbjct: 347 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCI 406

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A   +  M  DG+  D  +YN LIN  CK+G+ + A  L D +E +G + +  T
Sbjct: 407 DGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVT 466

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LI+GLCK+G    A   LE M   G   +   Y+  ++ L K       ++    M 
Sbjct: 467 FNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML 526

Query: 248 VKD----SFTYSSMVHNLCKAK 265
            KD    +  Y+ ++H L K +
Sbjct: 527 QKDVKPSTVNYTIVIHKLLKER 548



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 9/268 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARWILKE 70
            F  +L  L +      ALR+F  + +H    P   TYN +I+ LC+   L  A   L  
Sbjct: 119 PFASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSL 178

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  SG  P+A T+ +++    R  +  +  ++   M  +G+  D   Y T+I    + GR
Sbjct: 179 MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 238

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + EA +   +M     Q D+  Y  L+   C   + E   L+L  M++ G+      +  
Sbjct: 239 IDEAVELFGEM----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 294

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           ++D  C+    K A   L+ M + G    +     +++   K+G++  A+ V E M+++ 
Sbjct: 295 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 354

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLL 274
              + +TY+++V   C   ++  A  LL
Sbjct: 355 CKPNVWTYNALVQGFCNEGKVHKAMTLL 382



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 8/241 (3%)

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
           AP A TY  +++   R       L  LS M R G+  D + + ++I  + +  ++  A D
Sbjct: 150 APTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARD 209

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
             ++M   G   D+VSY TLI   C+ G+++ A  L  EM++     D + +  L+ GLC
Sbjct: 210 LFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQP----DMHMYAALVKGLC 265

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SF 252
            A   +   L L  M ++G+  +  AY  +VD   ++ K   A  + + M  K       
Sbjct: 266 NAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVV 325

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           T +++++  CK  R+  A ++L      G +       A+V G  + G   +A  + +K+
Sbjct: 326 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKM 385

Query: 313 R 313
           R
Sbjct: 386 R 386



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 126/320 (39%), Gaps = 62/320 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P T  + I+++ L K R      R +  +   G  P++VTY   ++  C  GR
Sbjct: 525 MLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGR 584

Query: 61  LRTARWILKEL----------------------GDSGHA-------------PNAITYTT 85
           L  A  +L E+                      G + HA             PN  TY  
Sbjct: 585 LNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFI 644

Query: 86  IMKCCFRNRKYKLGLEILSA-----------------MKRKGYTFDGFGYCTVIAAFVKI 128
           +++   R R  +  L +  A                 MK+  +  +   Y +++  F + 
Sbjct: 645 LLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSED 704

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           GR +EAT  +  M  D + L+   Y  L+  +CK  +   A++L+  M + GF     ++
Sbjct: 705 GRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSY 764

Query: 189 TILIDGL-CKAGNIKGARLHLEYMNKIGFDSNLE--AYNCIVDRLGKDGKID---HAINV 242
             L+ GL C+    K   +   +MN    D + +   +  I+D L K G  D     I +
Sbjct: 765 QHLLSGLICEGQTDKAKEI---FMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIM 821

Query: 243 FESMEVKDSF-TYSSMVHNL 261
            E M  + S  TY+ +   L
Sbjct: 822 LERMNCRPSHQTYAMLTEEL 841


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 2/264 (0%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           + G++ P T  +N +L G  K     NA ++   + + G  P+  TY++L+    +AGR 
Sbjct: 151 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRW 210

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCT 120
            +AR +LKE+   G  P++  ++ I+   FR+R +++    +L  M   G   D   Y  
Sbjct: 211 ESARILLKEMEADGVKPSSYVFSRIL-AGFRDRGEWQKAFAVLREMHASGVRPDRHFYNV 269

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K   L  A D  ++M  +G++ D+V++NTLI+ +CK G+ + A  L DEM +  
Sbjct: 270 MIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESN 329

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ I+I+ L +    +G    L  M + G   N+  Y  +VD  G+ G+   A+
Sbjct: 330 CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAV 389

Query: 241 NVFESMEVKDSFTYSSMVHNLCKA 264
           +  E+M+       S+M H L  A
Sbjct: 390 DCIEAMKADGLKPSSTMYHALVNA 413



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 123/279 (44%), Gaps = 13/279 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P    +N+M++   K     +A+  F  +++ G  P++VT+N LI   CK GR
Sbjct: 255 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 314

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +  E+ +S       TY  ++      ++++    +L+ MK +G   +   Y T
Sbjct: 315 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTT 374

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + + GR KEA D +E M  DG++     Y+ L+N Y + G  + A  ++  M   G
Sbjct: 375 LVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADG 434

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E        LI+   +   I  A   L++M + G   ++  Y  ++  L +       +
Sbjct: 435 LEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIR-------V 487

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
             FE + V     Y  M+ + C   R   A  +L S L+
Sbjct: 488 EQFEKVPV----IYEEMITSGCAPDR--KARAMLRSALR 520



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 40/243 (16%)

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT------------------- 112
           G+S   P+A  ++ ++    R R     LE+L++ +  G T                   
Sbjct: 80  GESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRV 139

Query: 113 ------FDGF-----------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                 F  F            Y  ++  +VKIG LK A   +++M   GV  D  +Y+ 
Sbjct: 140 AEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSL 199

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L++ Y + G+ E+A +LL EME  G +   Y  + ++ G    G  + A   L  M+  G
Sbjct: 200 LVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASG 259

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
              +   YN ++D  GK   + HA++ F+ M  +    D  T+++++   CK  R   A 
Sbjct: 260 VRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAI 319

Query: 272 KLL 274
           +L 
Sbjct: 320 ELF 322



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++ D   ++ LI+ + +    +AA  LL   +  G        T LI  L  A  +  A 
Sbjct: 84  LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 143

Query: 206 -LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
            L LE+           AYN ++    K G + +A  V + M       D  TYS +V  
Sbjct: 144 ALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDA 203

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             +A R  SA  LL      GV+        ++ G R  G
Sbjct: 204 YTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 243


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 143/310 (46%), Gaps = 41/310 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +  ++N  CK      A  +F  + +   VP   TY  LI G CKAG 
Sbjct: 288 MLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGE 347

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  ++ ++   G   N + + T+M    +       L + + M++KG+  D F  C 
Sbjct: 348 MKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFT-CN 406

Query: 121 VIAA-FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE---------------- 163
           +IA+ F +  R +EA   +  M   GV  ++VS++ LI++YCKE                
Sbjct: 407 IIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKK 466

Query: 164 -------------------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
                              GK+E AY L++EM+++G   D YT+T LIDG   +GN+  A
Sbjct: 467 GKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRA 526

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
                 M ++G + N+  Y  I+  L KDG+ D A  +++ M     V D   YSS++ +
Sbjct: 527 LELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIAS 586

Query: 261 LCKAKRLPSA 270
           L K   L S 
Sbjct: 587 LHKVGPLVSG 596



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 146/306 (47%), Gaps = 8/306 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++C    P   T+N +LNG  + +       +   ++K+     + TY +LI+   ++ +
Sbjct: 218 LVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSK 277

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           +  A  +  E+   G  P+   YT+I+   C F N K    L     M  +    + + Y
Sbjct: 278 IEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVL--FDEMTERRLVPNAYTY 335

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +I    K G +K A   +  M + GV ++ V +NTL++ YCK+G ++ A  L + M++
Sbjct: 336 GALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQ 395

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +GFE D +T  I+  G C++   + A+  L  M + G   N+ +++ ++D   K+     
Sbjct: 396 KGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAE 455

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A  +F+ ME K       TY++ +   CK  ++  A KL+    + G+        +++D
Sbjct: 456 ARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLID 515

Query: 295 GLRHSG 300
           G R SG
Sbjct: 516 GERASG 521



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 45/314 (14%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARWI 67
           C   F + ++    NR  D++L +F   +K GF + E   +  L+  L ++G +      
Sbjct: 125 CDMLFRVYMD----NRMFDSSLEVFDYARKKGFEIDERSCFEFLL-ALKRSGNMELCVEF 179

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ DSG      ++T ++    +  +      ++  +  KG+      Y T++  +++
Sbjct: 180 LRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIE 239

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--- 184
           I  +    + +  M  + V  ++ +Y  LI  Y +  K+E A  L DEM K+G E D   
Sbjct: 240 IKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYI 299

Query: 185 --------------------------------KYTHTILIDGLCKAGNIKGARLHLEYMN 212
                                            YT+  LI+G CKAG +K A + +  M 
Sbjct: 300 YTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQ 359

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
             G D N   +N ++D   K G ID A+ +   M+ K    D+FT + +    C++ R  
Sbjct: 360 SKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRRE 419

Query: 269 SASKLLLSCLKSGV 282
            A +LLL+  + GV
Sbjct: 420 EAKRLLLTMEERGV 433



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 124/265 (46%), Gaps = 24/265 (9%)

Query: 23  NRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81
           N  T + LR F  L Q     P+L  + IL   L +A +    + +LK + + G+  + +
Sbjct: 45  NLPTRSCLRFFDFLRQNPSRKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNV 104

Query: 82  TY------------TTIMKCC---FR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
                         + + K C   FR    NR +   LE+    ++KG+  D       +
Sbjct: 105 ERIVSSIGGEFNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFL 164

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            A  + G ++   +++ QMV  G+++ + S+  +++  CK+G++  A  L+DE+  +GF+
Sbjct: 165 LALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFK 224

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
               T+  L++G  +  ++ G    L  M K   D N+  Y  +++   +  KI+ A  +
Sbjct: 225 PSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKL 284

Query: 243 FESMEVK----DSFTYSSMVHNLCK 263
           F+ M  K    D + Y+S+++  CK
Sbjct: 285 FDEMLKKGIEPDVYIYTSIINWNCK 309


>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
          Length = 658

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 154/338 (45%), Gaps = 43/338 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTA 64
           + P    +N +L+GL      D A+ +F  +     V P++V+YNILIKG C+AGR   A
Sbjct: 218 VEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDA 277

Query: 65  RWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY------------ 111
              L E+ +     P+ +TY T+M+C +    + + + +   M+ +G             
Sbjct: 278 MARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLV 337

Query: 112 ---------TFDGFG----------------YCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                     F+G                  Y  +I +  K GR KEA    E+M   G+
Sbjct: 338 IGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGL 397

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           +LD V+Y  ++N  C+ GKL+ A       +++G   +   +T LIDG  KAG +  ++ 
Sbjct: 398 KLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKE 457

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             E M   GF  +   YN ++D L K G++D A  +++ ME     +  +TY+ ++  L 
Sbjct: 458 LFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLF 517

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           K  +   A K   + +  G+    +A + +  GL  SG
Sbjct: 518 KEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSG 555



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 135/305 (44%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            + +++  LCK+      + +F  + K G       Y  LI  + K GR + A  + + +
Sbjct: 333 AYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERM 392

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            DSG   +++TY  I+ C  R  K    +    + + KG   +   Y ++I  F K G +
Sbjct: 393 KDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMV 452

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            ++ +  E+M+  G   D   YN LI+   K G+++ A  L   ME  G +   YT+TIL
Sbjct: 453 DQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTIL 512

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SMEV 248
           IDGL K    + A    + M   G      A+  +   L   GK   A  + +    M V
Sbjct: 513 IDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGV 572

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK- 307
                +  M++ LCKA R   A KL    ++ G  I    +  +++ LR +G    A K 
Sbjct: 573 IPETAHEDMINVLCKAGRFKQACKLADGIVQKGREIPGRVRTMMINALRKAGNTDLAVKL 632

Query: 308 IQSKI 312
           + SKI
Sbjct: 633 VHSKI 637



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 43/247 (17%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKE 163
           AM+  G       Y  ++   V  G L  A +  + M T D V+ D+VSYN LI  YC+ 
Sbjct: 212 AMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRA 271

Query: 164 GKLEAAYLLLDEMEKQ--------------------------------------GFECDK 185
           G+   A   L EM++Q                                      G +  +
Sbjct: 272 GRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQ 331

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + + ++I  LCK G         E M K G  +N   Y  ++D +GK G+   A+ +FE 
Sbjct: 332 HAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFER 391

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      DS TY  +V+ LC+  +L  A     SC + G+ +      +++DG   +G 
Sbjct: 392 MKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGM 451

Query: 302 RREAKKI 308
             ++K++
Sbjct: 452 VDQSKEL 458



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 36/200 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P +  +N++++GL K+   D+A  +++ ++  G    + TY ILI GL     
Sbjct: 462 MIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGL----- 516

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                                         F+  K +  L+   AM  KG T     + T
Sbjct: 517 ------------------------------FKEHKNEEALKFWDAMIDKGITPTAAAFRT 546

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           + +     G+   A   ++++   GV +   ++  +IN+ CK G+ + A  L D + ++G
Sbjct: 547 LASGLCLSGKFSRACRILDELAPMGV-IPETAHEDMINVLCKAGRFKQACKLADGIVQKG 605

Query: 181 FECDKYTHTILIDGLCKAGN 200
            E      T++I+ L KAGN
Sbjct: 606 REIPGRVRTMMINALRKAGN 625


>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 511

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 134/268 (50%), Gaps = 5/268 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T NI++ GLC+    D A ++ + L+  G +P+++TYN LI GLC    +  AR +
Sbjct: 175 PVTYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSL 234

Query: 68  LKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L+E+  +G  AP+ ++YT I+    + RK + G  +   M   G   + F +  +I  F 
Sbjct: 235 LREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFG 294

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G +  A     +M+  G   D+ ++ +LIN + +  ++  A  +  +M ++      Y
Sbjct: 295 KLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLY 354

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+++L+ GLC    +  AR  L  +N+         YN ++D   K G +D A  +   M
Sbjct: 355 TYSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEM 414

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSA 270
           EV     D  T++ ++   C   R+P A
Sbjct: 415 EVNRCKPDKLTFTILIIGHCMKGRMPEA 442



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 9/227 (3%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+  P   ++ ++++G CK R  +    +F  +   G  P   T+N LI G  K G + +
Sbjct: 242 GEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMAS 301

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +  ++   G  P+  T+T+++   FR R+    +++   M  K      + Y  +++
Sbjct: 302 ALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSVLVS 361

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
                 RL +A D +  +    +      YN +I+ YCK G ++ A  ++ EME    + 
Sbjct: 362 GLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKP 421

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
           DK T TILI G C  G +  A         IGF   + A  C  D +
Sbjct: 422 DKLTFTILIIGHCMKGRMPEA---------IGFFDKMLAVGCAPDEI 459



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 142/345 (41%), Gaps = 40/345 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++++L  LC++     A  ++  ++  G +P+      L+      GRL  +R +L ++
Sbjct: 74  TYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVSSYAIVGRLDVSRELLADV 133

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +    NA+ Y  +     R  K    + +   + R  Y    +    +I    ++G +
Sbjct: 134 QCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIRGLCRVGEI 193

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTI 190
            EA   ++ + + G   D+++YNTLI+  C   +++ A  LL E+   G F  D  ++T+
Sbjct: 194 DEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPDVVSYTM 253

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           +I G CK   ++   L  + M   G   N   +N ++D  GK G +  A+ ++  M V+ 
Sbjct: 254 IISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQG 313

Query: 250 --------------------------------------DSFTYSSMVHNLCKAKRLPSAS 271
                                                   +TYS +V  LC   RL  A 
Sbjct: 314 CLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHKAR 373

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
            +L    +S +         V+DG   SG   EA KI +++ + +
Sbjct: 374 DILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNR 418



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 107/237 (45%), Gaps = 5/237 (2%)

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
           +TY+ +++   R+  +     +   M+  G   D      +++++  +GRL  + + +  
Sbjct: 73  LTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVSSYAIVGRLDVSRELLAD 132

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           +  + V ++ V YN L N+  ++ K+  A +L  E+ +  ++   YT  ILI GLC+ G 
Sbjct: 133 VQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIRGLCRVGE 192

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-----EVKDSFTYS 255
           I  A   L+ +   G   ++  YN ++  L    ++D A ++   +        D  +Y+
Sbjct: 193 IDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPDVVSYT 252

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            ++   CK +++   S L    + SG         A++DG    G    A  + SK+
Sbjct: 253 MIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKM 309



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 2/200 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P T TFN +++G  K     +AL ++  +   G +P++ T+  LI G  +  +
Sbjct: 274 MINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQ 333

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +  ++ +     +  TY+ ++   C  NR +K   +IL  +         F Y 
Sbjct: 334 VHQAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHK-ARDILRLLNESDIVPQPFIYN 392

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            VI  + K G + EA   + +M  +  + D +++  LI  +C +G++  A    D+M   
Sbjct: 393 PVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGFFDKMLAV 452

Query: 180 GFECDKYTHTILIDGLCKAG 199
           G   D+ T   L   L KAG
Sbjct: 453 GCAPDEITVNNLRSCLLKAG 472


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 43/316 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
             L P   T NIM++ LCK R  + A ++F    + G  P+ VTY  LI GL K G++  
Sbjct: 151 ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDE 210

Query: 64  ARWILKELGDSGHAPNAITYT-----------------------------------TIMK 88
           A  + +++ D+GH  N + YT                                   T M 
Sbjct: 211 AYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMD 270

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           C F+  + + G  I   ++  G+  D   Y  +I    K G+ +E ++    M   G  L
Sbjct: 271 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL 330

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D  +YN +++ +CK GK+  AY +L+EM+++  +    T+  ++DGL K   +  A +  
Sbjct: 331 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLF 390

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
           E     G + N+  Y+ ++D  GK G+ID A  + E M  K    + +T++S++  L KA
Sbjct: 391 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKA 450

Query: 265 KRLPSASKLLLSCLKS 280
           + +  A    L C +S
Sbjct: 451 EEINEA----LVCFQS 462



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 4/305 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P ++T+NI+++ LC     + A R+   ++     P L+T NI++  LCKA +L  A
Sbjct: 117 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 176

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             I +     G  P+ +TY +++    +  +      +   M   G+  +   Y ++I  
Sbjct: 177 YKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRN 236

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   GR ++     ++++  G + D+   NT ++   K G++E   ++ +++   GF  D
Sbjct: 237 FFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPD 296

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +++ILI GL KAG  +        M + GF  +  AYN +VD   K GK+  A  + E
Sbjct: 297 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 356

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+ K       TY ++V  L K  RL  A  L       G+ +      +++DG    G
Sbjct: 357 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 416

Query: 301 CRREA 305
              EA
Sbjct: 417 RIDEA 421



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 142/278 (51%), Gaps = 4/278 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           ++  ++F+ L + G  P+L   N  +  + KAG +   R I +++   G  P+  +Y+ +
Sbjct: 244 EDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSIL 303

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +    +  + +    I  AMK++G+  D   Y  V+  F K G++ +A + +E+M    V
Sbjct: 304 IHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV 363

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q  + +Y  +++   K  +L+ AY+L +E + +G E +   ++ LIDG  K G I  A L
Sbjct: 364 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 423

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-EVK---DSFTYSSMVHNLC 262
            LE M K G   N+  +N ++D L K  +I+ A+  F+SM E+K   +++TYS +++ LC
Sbjct: 424 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLC 483

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           + ++   A        K G+         ++ GL   G
Sbjct: 484 RVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG 521



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 132/267 (49%), Gaps = 4/267 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +++I+++GL K         +F  +++ GF  +   YN ++ G CK+G++  A  I
Sbjct: 295 PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 354

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+ +    P   TY  I+    +  +      +    K KG   +   Y ++I  F K
Sbjct: 355 LEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 414

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+ EA   +E+M+  G+  ++ ++N+L++   K  ++  A +    M++     + YT
Sbjct: 415 VGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYT 474

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ILI+GLC+      A +  + M K G   N+  Y  ++  L K G I  A ++FE  +
Sbjct: 475 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 534

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSA 270
               + D+ ++++++  +  A R   A
Sbjct: 535 ANGGIPDAASFNALIEGMSNANRAMEA 561



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 40/347 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++  M+  LCK      A  +F  ++    VP    YN +I G   AGR   A 
Sbjct: 14  LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAY 73

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+ L + G  P+ +++ +I+ C  + RK    L +   MK+     +   Y  +I   
Sbjct: 74  KLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEP-NSSTYNIIIDML 132

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR++EA   +++M    +  ++++ N +++  CK  KLE AY + +   ++G   D 
Sbjct: 133 CLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDC 192

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY---------------------- 223
            T+  LIDGL K G +  A    E M   G ++N   Y                      
Sbjct: 193 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKE 252

Query: 224 -------------NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
                        N  +D + K G+++    +FE +     + D  +YS ++H L KA +
Sbjct: 253 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 312

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
               S +  +  + G  +   A  AVVDG   SG   +A +I  +++
Sbjct: 313 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK 359



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A + F  L+  G  P+ V+Y  +I  LCKAGRL  A  +  ++      P A  Y T++ 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                 +++   ++L  ++ +G       + +++    K  ++ EA    E M  D  + 
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EP 120

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           +  +YN +I++ C  G++E AY +LDEME      +  T  I++D LCKA  ++ A    
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKA 264
           E  ++ G + +   Y  ++D LGK G++D A  +FE M       +   Y+S++ N    
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 240

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            R     K+    ++ G +   +     +D +  +G   + + I   IR
Sbjct: 241 GRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIR 289


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 152/319 (47%), Gaps = 9/319 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T NI+L GLC     DNAL++F      G   + VTYN +I GLCK GR
Sbjct: 290 MVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGR 349

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL--GLEILSAMKRKGYTFDGFGY 118
              A  +L E+ +    P+  TY  I+ C   + + ++    +  + M  K +  D F  
Sbjct: 350 FEEAFDLLAEMEEKKLGPDCYTYNAIL-CALADAEGQVEKAFQFRNKMVEKSFKPDLFTC 408

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-E 177
             ++      G L  A       ++ G  +D V+YNT+I+  CKEG+ E A+ LL EM E
Sbjct: 409 NILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEE 468

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           K G   D+ T+  +I G C+ G ++ A      M +  F  +L   N ++  L ++G + 
Sbjct: 469 KNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLV 528

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            A+ +F +   K    D+ TY++++  LCK  R   A  LL    +  +        A++
Sbjct: 529 KALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAIL 588

Query: 294 DGLRHSGCRREAKKIQSKI 312
             L  +G R EA++  SKI
Sbjct: 589 CALADAG-RMEAEEFMSKI 606



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 132/271 (48%), Gaps = 8/271 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK--GLCKAGRLRTARWIL 68
           A F  ++    KN+ ++ A+ +   ++     P+  +YN ++    LC++G+   +   L
Sbjct: 194 AIFTNVIKFGVKNKLSE-AIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKL 252

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
            EL +SG  P+ ITY TI+    R  + +   +  + M  K +  D F    ++      
Sbjct: 253 NELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTE 312

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G L  A       ++ G  +D V+YNT+I+  CKEG+ E A+ LL EME++    D YT+
Sbjct: 313 GMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTY 372

Query: 189 TILIDGLCKA-GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             ++  L  A G ++ A      M +  F  +L   N ++  L  +G +D+A+ +F +  
Sbjct: 373 NAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWI 432

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            K    D+ TY++++  LCK  R   A  LL
Sbjct: 433 SKGKAIDAVTYNTIISGLCKEGRFEEAFDLL 463



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 32/228 (14%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----------------- 162
           T I A+V   R   A     +M    ++ ++++ NTLIN   +                 
Sbjct: 140 TSIGAYVSCNRPHHAAQIFNRMKRLHLKPNLLTRNTLINALVRYPSKPSVCLSKAIFTNV 199

Query: 163 -----EGKLEAAYLLLDEMEKQGFEC--DKYTHTILID--GLCKAGNIKGARLHLEYMNK 213
                + KL  A  L+ +M  + F C  D  ++  ++D   LC++G    +   L  + +
Sbjct: 200 IKFGVKNKLSEAIGLIGKM--KDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLE 257

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G   +   YN I+    ++G+++ A      M  K    D FT + ++  LC    L +
Sbjct: 258 SGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDN 317

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           A KL  + +  G  I       ++ GL   G   EA  + +++   K+
Sbjct: 318 ALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKL 365


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 156/340 (45%), Gaps = 39/340 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++ LCKN     A +MF  + K G  PE+ TY  L++G    G L     +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  +G  PN   ++ ++    +  K    + + S M+++G   D   Y TVI    K
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421

Query: 128 IGRLKEATDYMEQMVTD-----------------------------------GVQLDIVS 152
            GR+++A  Y EQM+ +                                   G+ LD + 
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +N++I+ +CKEG++  +  L D M + G + D  T++ LIDG C AG +  A   L  M 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
            +G   +   YN +++   K  +++ A+ +F  ME      D  TY+ ++  L + +R  
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +A +L +   +SG ++  S    ++ GL  +    EA ++
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 156/331 (47%), Gaps = 46/331 (13%)

Query: 13  FNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK-- 69
           F  +L GLC ++ T +A+ +  R + + G +P + +YNIL+KGLC   R + A  +L+  
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 70  -----------------------------------ELGDSGHAPNAITYTTIMKCCFRNR 94
                                              E+ D G  PN +TY++I+    + +
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQ 248

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
                +E+L++M + G   +   Y +++  +   G+ KEA  ++++M +DGV+ D+V+YN
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +L++  CK G+   A  + D M K+G + +  T+  L+ G    G +      L+ M + 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           G   N   ++ ++    K GK+D A+ VF  M  +    D+ TY +++  LCK+ R+  A
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            +     +   +    S    V + L HS C
Sbjct: 429 MRYFEQMIDERL----SPGNIVYNSLIHSLC 455



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 145/312 (46%), Gaps = 9/312 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   ++  ++NG  K    D A   +  +   G +P +VTY+ +I  LCKA  +  
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  PN  TY +I+     + + K  +  L  M   G   D   Y +++ 
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMD 312

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ +I +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + Y  +ILI    K G +  A L    M + G + +   Y  ++  L K G+++ A+  F
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M        +  Y+S++H+LC   +   A +L+L  L  G+ +      +++D    S
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID----S 488

Query: 300 GCRREAKKIQSK 311
            C +E + I+S+
Sbjct: 489 HC-KEGRVIESE 499



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 151/311 (48%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ ++  LCK +  D A+ +   + K+G +P   TYN ++ G C +G+ + A 
Sbjct: 230 ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAI 289

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     ++  +M ++G   +   Y T++  +
Sbjct: 290 GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ LI  Y K+GK++ A L+  +M +QG   D 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G ++ A  + E M           YN ++  L    K D A  +   
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILE 469

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D+  ++S++ + CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 302 RREAKKIQSKI 312
             EA K+ + +
Sbjct: 530 MDEATKLLASM 540



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    D A+ +F  +++ G  P+ VTY  +I  LCK+GR
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D   +P  I Y +++       K+    E++  M  +G   D   + +
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ DI++Y+TLI+ YC  GK++ A  LL  M   G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D  T+  LI+G CK   ++ A +    M   G   ++  YN I+  L +  +   A 
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + ES    +  TY+ ++H LCK      A ++  +   + +++       ++  L
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 665 LKVGRNDEAKDL 676



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 7/249 (2%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
            P L TY ILI   C AGRL      L  +   G   +AI +T ++K    +++    ++
Sbjct: 88  TPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMD 147

Query: 102 I-LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLIN 158
           I L  M + G   + F Y  ++       R +EA + ++ M  DG     D+VSY T+IN
Sbjct: 148 IVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            + KEG L+ AY    EM  +G   +  T++ +I  LCKA  +  A   L  M K G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           N   YN IV      G+   AI   + M       D  TY+S++  LCK  R   A K+ 
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 275 LSCLKSGVR 283
            S  K G++
Sbjct: 328 DSMTKRGLK 336



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 5/246 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ I++   C     D        + K GF  + + +  L+KGLC   R   A
Sbjct: 86  EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145

Query: 65  -RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCT 120
              +L+ +   G  PN  +Y  ++K  C  NR  +  LE+L  M   G     D   Y T
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE-ALELLQMMPDDGGDCPPDVVSYTT 204

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K G L +A     +M+  G+  ++V+Y+++I   CK   ++ A  +L  M K G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  ++ G C +G  K A   L+ M+  G + ++  YN ++D L K+G+   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 241 NVFESM 246
            +F+SM
Sbjct: 325 KMFDSM 330



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G C     D A ++   +   G  P+ VTYN LI G CK  R+  A  +
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+  SG +P+ ITY  I++  F+ R+     E+   +   G   +   Y  ++    K
Sbjct: 572 FREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    + +    +QL+  ++N +I    K G+ + A  L   +   G   D  T
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRT 691

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           ++++ + L + G ++        M + G  +N    N IV +L + G I  A
Sbjct: 692 YSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 43/258 (16%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +++  CK      + ++F  + + G  P+++TY+ LI G C AG++  A  +L 
Sbjct: 479 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLA 538

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+ +TY T++                             GYC       KI 
Sbjct: 539 SMVSVGMKPDCVTYNTLIN----------------------------GYC-------KIS 563

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A     +M + GV  DI++YN ++    +  +  AA  L   + + G + +  T+ 
Sbjct: 564 RMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE--AYNCIVDRLGKDGKIDHAINVFESME 247
           I++ GLCK  N+    L + + N    D  LE   +N ++  L K G+ D A ++F ++ 
Sbjct: 624 IILHGLCK-NNLTDEALRM-FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681

Query: 248 ----VKDSFTYSSMVHNL 261
               V D  TYS M  NL
Sbjct: 682 ANGLVPDVRTYSLMAENL 699



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 2/222 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NG CK    ++AL +FR ++  G  P+++TYNI+++GL +  R
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +   + +SG      TY  I+    +N      L +   +       +   +  
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A +K+GR  EA D    +  +G+  D+ +Y+ +     ++G LE    L   ME+ G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
              +      ++  L + G+I  A  +L  +++  F  +LEA
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHF--SLEA 759



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 42/210 (20%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           M +   D V  ++ +Y  LI   C  G+L+  +  L  + K+GF  D    T L+ GLC 
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 198 AGNIKGA-RLHLEYMNKIGFDSNLEAYN-------------------------------- 224
                 A  + L  M ++G   N+ +YN                                
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPD 198

Query: 225 -----CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
                 +++   K+G +D A   +  M     + +  TYSS++  LCKA+ +  A ++L 
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLT 258

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           S +K+GV        ++V G   SG  +EA
Sbjct: 259 SMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 138/266 (51%), Gaps = 4/266 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK R    A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 127 FNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMH 186

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 246

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 247 LALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALI 306

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 307 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 366

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D+ TY+ +++  CK   +   SKLL
Sbjct: 367 PDARTYTMIINEFCKKGDVWKGSKLL 392



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 113/231 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 155 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 214

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L LEI   M  +    D   Y T+I   
Sbjct: 215 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGL 274

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y  LI+  CKEG L+ A+     M ++    D 
Sbjct: 275 CKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDD 334

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +
Sbjct: 335 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 385



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 109/202 (53%), Gaps = 1/202 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR+  A 
Sbjct: 190 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAL 249

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I K++      P+ ITY T++    +    K   +++  M  KG   D   Y  +I   
Sbjct: 250 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGC 309

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G + D 
Sbjct: 310 CKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDA 369

Query: 186 YTHTILIDGLCKAGNI-KGARL 206
            T+T++I+  CK G++ KG++L
Sbjct: 370 RTYTMIINEFCKKGDVWKGSKL 391



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       ++ + + G+   L  +NIL+   CK   +R A+ +   +   G
Sbjct: 95  VLEHLMKLKYFKLVWGFYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWG 154

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 155 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 214

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 215 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGL 274

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 275 CKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRL-D 333

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 334 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 366



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      KE+
Sbjct: 56  VFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEI 115

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +SG+  +   +  +M    + R  ++   +  A+ + G       Y T++  ++++G L
Sbjct: 116 LESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 175

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM  +G   +  T T L
Sbjct: 176 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 235

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           IDG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M +K  
Sbjct: 236 IDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGL 295

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TY++++   CK   L +A +     ++  +R+   A  A++ GL   G   +A+K
Sbjct: 296 KPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEK 355

Query: 308 I 308
           +
Sbjct: 356 M 356


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 5/284 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG +TP    F+ M+N  C     D+A+ +FR ++K G  P +VTYN +I GLCK GRL 
Sbjct: 191 CG-VTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLD 249

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A    +++      P+ +TY  ++    +  ++     IL  M  +GY  +   Y T+I
Sbjct: 250 EAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLI 309

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             + +IG +  A    + M+++G+  + V+ N+LI  YCK  ++E A  LL+EM   G  
Sbjct: 310 DGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGV 369

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            ++ T T +I  LC       A L +  M    F  N      +V  L ++GK   AI +
Sbjct: 370 INQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIEL 429

Query: 243 F----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +    E     ++ T ++++H LC+A     A+KLL   L+ G+
Sbjct: 430 WYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGL 473



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 159/357 (44%), Gaps = 39/357 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P      ++++GLC+N     A+ ++  L + GF    VT N LI GLC+AG 
Sbjct: 398 MLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGS 457

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTF-- 113
              A  +LKE+ + G   ++I+Y T++  C +  K + G ++   M R+G     YT+  
Sbjct: 458 KEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNM 517

Query: 114 ----------------------------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                                       D + Y  +I  + K  R++E     ++MVT  
Sbjct: 518 LLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMK 577

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++ + V Y TLI  YC+ G +  A+ L D+M  +G      T++ LI GL   G +  A 
Sbjct: 578 IEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSAN 637

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNL 261
             L+ M K G   N+  Y  ++    K G++    ++ + M +     +  TY+ M++  
Sbjct: 638 QLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGH 697

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           CK   + +A+KLL    + G+        A+ +G    G   EA K+   +    IS
Sbjct: 698 CKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGIS 754



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 129/262 (49%), Gaps = 4/262 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N++L+GLC     + A  ++   +K+G  P+  TY I+I G CKA R
Sbjct: 503 MVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANR 562

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     + +E+       NA+ Y T+++    N   +    +   M+ +G       Y +
Sbjct: 563 VEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSS 622

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I     IG +  A   +++M  +G+  ++V Y  LI  YCK G++     +L EM    
Sbjct: 623 LIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINN 682

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +K T+TI+I+G CK GN+K A   L  M + G   +   YN + +   K+GK++ A+
Sbjct: 683 VHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEAL 742

Query: 241 NVFESMEVK----DSFTYSSMV 258
            V + M       D  TY++++
Sbjct: 743 KVCDLMSTGGISLDDITYTTLI 764



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 156/350 (44%), Gaps = 39/350 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++G C+      AL++   +  +G  P  VT N LI+G CK+ ++  A  +
Sbjct: 300 PNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHL 359

Query: 68  LKELGDSGHAPNAITYTTI-----MKCCF------------------------------R 92
           L+E+   G   N  T+T++     +KC F                              +
Sbjct: 360 LEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQ 419

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           N K    +E+   +  KG+  +      +I    + G  +EA   +++M+  G+ LD +S
Sbjct: 420 NGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSIS 479

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YNTLI   CKEGK+E  + L +EM ++G + D YT+ +L+ GLC  G I+ A        
Sbjct: 480 YNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECK 539

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLP 268
           K G   +   Y  ++D   K  +++    +F+ M      +++  Y +++   C+   + 
Sbjct: 540 KNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMR 599

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A +L       G+    +   +++ GL + G    A ++  ++R   +S
Sbjct: 600 EAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLS 649



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 129/288 (44%), Gaps = 4/288 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
              +F  L   G  P L T N L+  L KA  ++ +  +   +   G  P+   ++T++ 
Sbjct: 146 VFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVN 205

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                 +    +E+   M++ G   +   Y  +I    K GRL EA  + E+M  + V+ 
Sbjct: 206 AFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKP 265

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
            +V+Y  LIN   K  + + A  +L EM  +G+  +   +  LIDG C+ GNI  A    
Sbjct: 266 SLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIR 325

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKA 264
           + M   G   N    N ++    K  +++HA ++ E M     V +  T++S++H LC  
Sbjct: 326 DDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLK 385

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            R  SA   ++  L    +        +V GL  +G + EA ++  ++
Sbjct: 386 CRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRL 433



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 135/307 (43%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T N +L+ L K      + ++F  +   G  P++  ++ ++   C  GR+  A 
Sbjct: 158 LFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAI 217

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++   G APN +TY  I+    +N +     +    M+++        Y  +I   
Sbjct: 218 ELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGL 277

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK+ R  EA   +++M   G   + V YNTLI+ YC+ G +  A  + D+M   G   + 
Sbjct: 278 VKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNS 337

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   LI G CK+  ++ A   LE M   G   N   +  ++ RL    + D A+     
Sbjct: 338 VTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIME 397

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M ++    +    + +V  LC+  +   A +L    L+ G         A++ GL  +G 
Sbjct: 398 MLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGS 457

Query: 302 RREAKKI 308
           + EA K+
Sbjct: 458 KEEAAKL 464



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 35/189 (18%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +AT++ +++GL      D+A ++   ++K G  P +V Y  LI G CK G++     IL+
Sbjct: 617 SATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQ 676

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  +   PN ITYT ++                             G+C       K+G
Sbjct: 677 EMSINNVHPNKITYTIMIN----------------------------GHC-------KLG 701

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +K A   + +M   G+  D V+YN L N +CKEGK+E A  + D M   G   D  T+T
Sbjct: 702 NMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYT 761

Query: 190 ILIDGLCKA 198
            LIDG  K 
Sbjct: 762 TLIDGWHKP 770



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 55/122 (45%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P    +  ++ G CK         + + +  +   P  +TY I+I G CK G ++ A 
Sbjct: 648 LSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAA 707

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+   G  P+A+TY  +     +  K +  L++   M   G + D   Y T+I  +
Sbjct: 708 KLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGW 767

Query: 126 VK 127
            K
Sbjct: 768 HK 769


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 140/309 (45%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++N  C+    + A  +   +   G  P + TYN +I GLCK G+   A+ +
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G +P+  TY  ++  C RN        I   M  +G   D   +  +I    K
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 406

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L +A  Y   M   G+  D V Y  LI  +C+ G +  A  + DEM +QG   D  T
Sbjct: 407 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 466

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  +++GLCK   +  A      M + G   +   +  +++   KDG ++ A+ +FE M 
Sbjct: 467 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 526

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++   CK   +   ++L    +   +     +   +++G  + GC  
Sbjct: 527 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 586

Query: 304 EAKKIQSKI 312
           EA ++  ++
Sbjct: 587 EAFRLWDEM 595



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 149/311 (47%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + I++ G C+N     AL++   + + G V ++VTYN ++ GLCK   L  A 
Sbjct: 425 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEAD 484

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  P+  T+TT++    ++      + +   M ++    D   Y T+I  F
Sbjct: 485 ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 544

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   +++  +    M++  +  + +SY  LIN YC  G +  A+ L DEM ++GFE   
Sbjct: 545 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI 604

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   ++ G C+AGN   A   L  M   G   +   YN +++   K+  +D A  +   
Sbjct: 605 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 664

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME    + D  TY+ +++   +  R+  A  ++L  ++ GV   +S   ++++G      
Sbjct: 665 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNN 724

Query: 302 RREAKKIQSKI 312
            +EA ++  ++
Sbjct: 725 LKEAFRVHDEM 735



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 143/316 (45%), Gaps = 4/316 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L PC  T+N ++NGLCK      A  +   + K G  P+  TYNIL+   C+   +  A 
Sbjct: 320 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 379

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+   G  P+ ++++ ++    +N      L+    MK  G   D   Y  +I  F
Sbjct: 380 RIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 439

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA    ++M+  G  LD+V+YNT++N  CKE  L  A  L  EM ++G   D 
Sbjct: 440 CRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 499

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT T LI+G  K GN+  A    E M +     ++  YN ++D   K  +++    ++  
Sbjct: 500 YTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWND 559

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    +  +Y  +++  C    +  A +L    ++ G          +V G   +G 
Sbjct: 560 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 619

Query: 302 RREAKKIQSKIRMAKI 317
             +A +  S + +  I
Sbjct: 620 AVKADEFLSNMLLKGI 635



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 4/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           F++++    + R        FR L+  G    +   N L+ GL K G +  A  I +E+ 
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG   N  T   ++    +N+K +     LS M+ KG   D   Y T+I A+ + G L+
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 306

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA + M+ M   G++  + +YN +IN  CK GK   A  +LDEM K G   D  T+ IL+
Sbjct: 307 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 366

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
              C+  N+  A    + M   G   +L +++ ++  L K+G +D A+  F  M+     
Sbjct: 367 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 426

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D+  Y+ ++   C+   +  A K+    L+ G  +       +++GL       EA ++
Sbjct: 427 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADEL 486

Query: 309 QSKI 312
            +++
Sbjct: 487 FTEM 490



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 2/217 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +L P   T+N +++G CK    +    ++  +      P  ++Y ILI G C  G 
Sbjct: 525 MIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGC 584

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ + G     IT  TI+K   R        E LS M  KG   DG  Y T
Sbjct: 585 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 644

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F+K   +  A   + +M   G+  D+++YN ++N + ++G+++ A L++ +M ++G
Sbjct: 645 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 704

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGF 216
              D+ T+T LI+G     N+K A R+H E + + GF
Sbjct: 705 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR-GF 740



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 91/184 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   ++ I++NG C       A R++  + + GF   ++T N ++KG C+AG 
Sbjct: 560 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 619

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A   L  +   G  P+ ITY T++    +         +++ M+  G   D   Y  
Sbjct: 620 AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNV 679

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + GR++EA   M +M+  GV  D  +Y +LIN +  +  L+ A+ + DEM ++G
Sbjct: 680 ILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 739

Query: 181 FECD 184
           F  D
Sbjct: 740 FVPD 743


>gi|356507504|ref|XP_003522504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Glycine max]
          Length = 555

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 140/294 (47%), Gaps = 19/294 (6%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   +F+ + +GLC  +  D A R+F  +++ GF P+L+ Y++LI G CK GRL  A  
Sbjct: 10  VPSVISFSAIFSGLCHVKRADEAHRLFNVMKERGFQPDLICYSVLINGYCKLGRLEEAIS 69

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L+ L   G A     Y++++   F  R+Y         M +KG   D   Y  +I    
Sbjct: 70  FLRLLERDGLALGIKGYSSLIAGFFSARRYNEAHAWYGRMFKKGIVPDVVLYTILIRGLS 129

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA-YLLLDEMEKQGFECDK 185
             GR+ EA   + +M+  G+  D V YN +I   C  G L+ A  L L+  E QGF  + 
Sbjct: 130 SEGRVGEAAKMLGEMIQIGLVPDAVCYNEIIKGLCDVGLLDRARSLQLEISEHQGFH-NV 188

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            THTI+I  LCK G  + A+     M K+G   ++  +N ++D L K GK++ A  +   
Sbjct: 189 CTHTIIICDLCKRGMAEKAQEIFNKMEKLGCFPSIVTFNALMDGLCKAGKLEEAHLLLYK 248

Query: 246 ME-----------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ME                 V DS      V  +C+A +L  A KLL+    SGV
Sbjct: 249 MEIGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQLLDAYKLLIQLAGSGV 302



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    + I++ GL        A +M   + + G VP+ V YN +IKGLC  G L  AR
Sbjct: 114 IVPDVVLYTILIRGLSSEGRVGEAAKMLGEMIQIGLVPDAVCYNEIIKGLCDVGLLDRAR 173

Query: 66  WILKELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +  E+ +     N  T+T I+   C R    K   EI + M++ G       +  ++  
Sbjct: 174 SLQLEISEHQGFHNVCTHTIIICDLCKRGMAEK-AQEIFNKMEKLGCFPSIVTFNALMDG 232

Query: 125 FVKIGRLKEATDYMEQM-----------VTDGVQ--LDIVSYNTLINLYCKEGKLEAAYL 171
             K G+L+EA   + +M           ++ G    LD V+    +   C+ G+L  AY 
Sbjct: 233 LCKAGKLEEAHLLLYKMEIGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQLLDAYK 292

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
           LL ++   G   D  T+ +LI+G CKA NI GA    + M   G   N   Y  ++D L 
Sbjct: 293 LLIQLAGSGVMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGTLIDGLF 352

Query: 232 KDGKIDHAINVFESM---EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
           + G+ + A  + + M     + SF  Y +++  LC+ KR+  A  L L  LK+    L+ 
Sbjct: 353 RVGREEDAFKIHKHMLKHGCEPSFEVYRALMTWLCRKKRVSQAFSLYLEYLKN----LRG 408

Query: 288 AQKAVVDGLRHSGCRREAKK 307
            +   ++ L     R E ++
Sbjct: 409 REDNSINALEECFVRGEVEQ 428



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 20  LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           +C+     +A ++   L   G +P++VTYN+LI G CKA  +  A  + K++ + G +PN
Sbjct: 281 MCEAGQLLDAYKLLIQLAGSGVMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPN 340

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            +TY T++   FR  + +   +I   M + G       Y  ++    +  R+ +A     
Sbjct: 341 PVTYGTLIDGLFRVGREEDAFKIHKHMLKHGCEPSFEVYRALMTWLCRKKRVSQAFSLYL 400

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           + + +    +  S N L   + + G++E A+  L E++ +  +     +TIL+ G C+A 
Sbjct: 401 EYLKNLRGREDNSINALEECFVR-GEVEQAFRGLLELDFRFRDFALAPYTILLIGFCQAE 459

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCI--VDRLGKDGKIDHAINVF 243
            +  A L    ++K  F+ N+   +C+  +  L ++G++D A+N+F
Sbjct: 460 KVNEALLIFTVLDK--FNININPASCVYLIRGLSENGRLDDAVNIF 503


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 151/316 (47%), Gaps = 12/316 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+NI+++ LC+    + AL +   +++ G  P ++T NI+I  LCKA +L  A
Sbjct: 154 DAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEA 213

Query: 65  RWILKELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             I + + D    PNA+T+++++    KC   +  Y L  ++L      G+      Y +
Sbjct: 214 CSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDC----GHVPGAIVYTS 269

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +F K GR ++     ++MV  G   D+   NT ++   K G+ E    L  E+   G
Sbjct: 270 LIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHG 329

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D  +++ILI GL KAG           M + G   +  AYN ++D   K GK++ A 
Sbjct: 330 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAY 389

Query: 241 NVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + E M+VK       TY S++  L K  RL  A  L      +G+++      +++DG 
Sbjct: 390 QLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGF 449

Query: 297 RHSGCRREAKKIQSKI 312
              G   EA  I  ++
Sbjct: 450 GKVGRIDEAYLIMEEL 465



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 159/382 (41%), Gaps = 74/382 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T NIM++ LCK +  + A  +F G+      P  VT++ LI GL K GR+  A 
Sbjct: 190 LFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAY 249

Query: 66  WILKELGDSGHAPNAITYT-----------------------------------TIMKCC 90
            + +++ D GH P AI YT                                   T M C 
Sbjct: 250 SLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCV 309

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           F+  + + G  +   +   G+  D   Y  +I   VK G   E  +    M   G  LD 
Sbjct: 310 FKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDT 369

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQG---------------------------FEC 183
            +YN +I+ +CK GK+  AY LL+EM+ +G                           FE 
Sbjct: 370 HAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 429

Query: 184 DK--------YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
            K          ++ LIDG  K G I  A L +E + + G   N+  +NC++D L K  +
Sbjct: 430 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 489

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           I+ A+  F+SM+      +  TYS +++ LC+ ++   A        K G++        
Sbjct: 490 INEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTT 549

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           ++ GL  +G   EA  + S+ +
Sbjct: 550 MISGLAKAGNILEASGLFSRFK 571



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 157/313 (50%), Gaps = 6/313 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P     N  ++ + K   T+    +FR +  HGF+P+  +Y+ILI GL KAG       
Sbjct: 296 SPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYE 355

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   + + G   +   Y  ++    ++ K     ++L  MK KG+      Y +VI    
Sbjct: 356 LFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLA 415

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KI RL EA    E+  ++G++L++V Y++LI+ + K G+++ AYL+++E+ ++G   + Y
Sbjct: 416 KIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVY 475

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   L+D L KA  I  A +  + M  +    N   Y+ +++ L +  K + A   ++ M
Sbjct: 476 TWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEM 535

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ-KAVVDGLRHSGC 301
           +      ++ TY++M+  L KA  +  AS  L S  K+   I  SA   A+++GL  +  
Sbjct: 536 QKLGLKPNTITYTTMISGLAKAGNILEASG-LFSRFKANGGIPDSASYNAMIEGLSSANK 594

Query: 302 RREAKKIQSKIRM 314
             +A  +  + R+
Sbjct: 595 AMDAYALFEETRL 607



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 40/266 (15%)

Query: 20  LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           LCK    D A+ +F  L+++  VP    YN +I G   AG+   A  +L+     G  P+
Sbjct: 65  LCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 124

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            I Y  I+ C  + R+ +  L I   MKR                               
Sbjct: 125 VIAYNCILTCLGKKRRVEEALRIFEEMKR------------------------------- 153

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
               D V  ++ +YN LI++ C+EGKL AA  + D+ME+ G   +  T  I+ID LCKA 
Sbjct: 154 ----DAVP-NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQ 208

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYS 255
            ++ A    E M+      N   ++ ++D LGK G++D A +++E M     V  +  Y+
Sbjct: 209 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYT 268

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSG 281
           S++ +  K  R     K+    + +G
Sbjct: 269 SLIRSFFKCGRKEDGHKIYKEMVHTG 294



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 81/189 (42%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
              ++ +++G  K    D A  +   L + G  P + T+N L+  L KA  +  A    +
Sbjct: 439 VVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQ 498

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + D    PN ITY+ ++    R RK+         M++ G   +   Y T+I+   K G
Sbjct: 499 SMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAG 558

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            + EA+    +   +G   D  SYN +I       K   AY L +E   +G      T  
Sbjct: 559 NILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCV 618

Query: 190 ILIDGLCKA 198
           +L+D L KA
Sbjct: 619 VLLDALHKA 627



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 2/221 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+  +++GL K    D A  +F   + +G    +V Y+ LI G  K GR+  A  
Sbjct: 401 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYL 460

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           I++EL   G  PN  T+  ++    +  +    L    +MK      +   Y  +I    
Sbjct: 461 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 520

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++ +  +A  + ++M   G++ + ++Y T+I+   K G +  A  L    +  G   D  
Sbjct: 521 RVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSA 580

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
           ++  +I+GL  A     A    E     G   N+    C+V
Sbjct: 581 SYNAMIEGLSSANKAMDAYALFEETRLKG--CNIHTKTCVV 619



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 18/177 (10%)

Query: 112 TFDGFGYCT-----VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN-------- 158
           +  GFG  +     ++A  VK  +L+EA D ++ M     +    +Y  LI         
Sbjct: 2   SLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLF 61

Query: 159 --LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
             + CK  +L+ A  L +++E+       Y +  +I G   AG    A   LE     G 
Sbjct: 62  PWVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGS 121

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSA 270
             ++ AYNCI+  LGK  +++ A+ +FE M+   V +  TY+ ++  LC+  +L +A
Sbjct: 122 IPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAA 178


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 156/340 (45%), Gaps = 39/340 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++ LCKN     A +MF  + K G  PE+ TY  L++G    G L     +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  +G  PN   ++ ++    +  K    + + S M+++G   D   Y TVI    K
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421

Query: 128 IGRLKEATDYMEQMVTD-----------------------------------GVQLDIVS 152
            GR+++A  Y EQM+ +                                   G+ LD + 
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +N++I+ +CKEG++  +  L D M + G + D  T++ LIDG C AG +  A   L  M 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
            +G   +   YN +++   K  +++ A+ +F  ME      D  TY+ ++  L + +R  
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +A +L +   +SG ++  S    ++ GL  +    EA ++
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 156/331 (47%), Gaps = 46/331 (13%)

Query: 13  FNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK-- 69
           F  ML GLC ++ T +A+ +  R + + G +P + +YNIL+KGLC   R + A  +L+  
Sbjct: 129 FTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMM 188

Query: 70  -----------------------------------ELGDSGHAPNAITYTTIMKCCFRNR 94
                                              E+ D G  PN +TY++I+    + +
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQ 248

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
                +E+L++M + G   +   Y +++  +   G+ KEA  ++++M +DGV+ D+V+YN
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +L++  CK G+   A  + D M K+G + +  T+  L+ G    G +      L+ M + 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           G   N   ++ ++    K GK+D A+ VF  M  +    D+ TY +++  LCK+ R+  A
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            +     +   +    S    V + L HS C
Sbjct: 429 MRYFEQMIDERL----SPGNIVYNSLIHSLC 455



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 145/312 (46%), Gaps = 9/312 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   ++  ++NG  K    D A   +  +   G +P +VTY+ +I  LCKA  +  
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  PN  TY +I+     + + K  +  L  M   G   D   Y +++ 
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMD 312

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ +I +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + Y  +ILI    K G +  A L    M + G + +   Y  ++  L K G+++ A+  F
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M        +  Y+S++H+LC   +   A +L+L  L  G+ +      +++D    S
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID----S 488

Query: 300 GCRREAKKIQSK 311
            C +E + I+S+
Sbjct: 489 HC-KEGRVIESE 499



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 151/311 (48%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ ++  LCK +  D A+ +   + K+G +P   TYN ++ G C +G+ + A 
Sbjct: 230 ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAI 289

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     ++  +M ++G   +   Y T++  +
Sbjct: 290 GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ LI  Y K+GK++ A L+  +M +QG   D 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G ++ A  + E M           YN ++  L    K D A  +   
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILE 469

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D+  ++S++ + CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 302 RREAKKIQSKI 312
             EA K+ + +
Sbjct: 530 MDEATKLLASM 540



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    D A+ +F  +++ G  P+ VTY  +I  LCK+GR
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D   +P  I Y +++       K+    E++  M  +G   D   + +
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ DI++Y+TLI+ YC  GK++ A  LL  M   G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D  T+  LI+G CK   ++ A +    M   G   ++  YN I+  L +  +   A 
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + ES    +  TY+ ++H LCK      A ++  +   + +++       ++  L
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 665 LKVGRNDEAKDL 676



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ I++   C     D        + K GF+ + + +  ++KGLC   R   A
Sbjct: 86  EVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDA 145

Query: 65  -RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTV 121
              +L+ +   G  PN  +Y  ++K    + + +  LE+L  M   G     D   Y TV
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTV 205

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F K G L +A     +M+  G+  ++V+Y+++I   CK   ++ A  +L  M K G 
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             +  T+  ++ G C +G  K A   L+ M+  G + ++  YN ++D L K+G+   A  
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 242 VFESM 246
           +F+SM
Sbjct: 326 MFDSM 330



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G C     D A ++   +   G  P+ VTYN LI G CK  R+  A  +
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+  SG +P+ ITY  I++  F+ R+     E+   +   G   +   Y  ++    K
Sbjct: 572 FREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    + +    +QL+  ++N +I    K G+ + A  L   +   G   D  T
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRT 691

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           ++++ + L + G ++        M + G  +N    N IV +L + G I  A
Sbjct: 692 YSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 43/258 (16%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +++  CK      + ++F  + + G  P+++TY+ LI G C AG++  A  +L 
Sbjct: 479 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLA 538

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+ +TY T++                             GYC       KI 
Sbjct: 539 SMVSVGMKPDCVTYNTLIN----------------------------GYC-------KIS 563

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A     +M + GV  DI++YN ++    +  +  AA  L   + + G + +  T+ 
Sbjct: 564 RMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE--AYNCIVDRLGKDGKIDHAINVFESME 247
           I++ GLCK  N+    L + + N    D  LE   +N ++  L K G+ D A ++F ++ 
Sbjct: 624 IILHGLCK-NNLTDEALRM-FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681

Query: 248 ----VKDSFTYSSMVHNL 261
               V D  TYS M  NL
Sbjct: 682 ANGLVPDVRTYSLMAENL 699



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 2/222 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NG CK    ++AL +FR ++  G  P+++TYNI+++GL +  R
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +   + +SG      TY  I+    +N      L +   +       +   +  
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A +K+GR  EA D    +  +G+  D+ +Y+ +     ++G LE    L   ME+ G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
              +      ++  L + G+I  A  +L  +++  F  +LEA
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHF--SLEA 759



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 42/210 (20%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           M +   D V  ++ +Y  L+   C  G+L+  +  L  + K+GF  D    T ++ GLC 
Sbjct: 79  MARAGADEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCA 138

Query: 198 AGNIKGA-RLHLEYMNKIGFDSNLEAYN-------------------------------- 224
                 A  + L  M ++G   N+ +YN                                
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPD 198

Query: 225 -----CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
                 +++   K+G +D A   +  M     + +  TYSS++  LCKA+ +  A ++L 
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLT 258

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           S +K+GV        ++V G   SG  +EA
Sbjct: 259 SMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 134/272 (49%), Gaps = 4/272 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   T+N ++NGLCK+   + A  +F  + + G  P+  TY  L+   CK G      
Sbjct: 291 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETE 350

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  ++      P+ + ++++M    R+      L   +++K  G   D   Y  +I  +
Sbjct: 351 NIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 410

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA +   +M+  G  +D+V+YNT+++  CK   L  A  L +EM ++G   D 
Sbjct: 411 CRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDS 470

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT TILIDG CK GN++ A    + M +     ++  YN ++D  GK G ID A  ++  
Sbjct: 471 YTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWAD 530

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKL 273
           M  K+      ++S +V+ LC    L  A ++
Sbjct: 531 MVSKEILPTPISFSILVNALCSKGHLSEAFRV 562



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 145/313 (46%), Gaps = 6/313 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + I++ G C+      A+ +   + + G   ++VTYN ++ GLCK   L  A 
Sbjct: 396 LIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 455

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  P++ T T ++    +    +  +E+   MK K    D   Y T++  F
Sbjct: 456 KLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGF 515

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +  A +    MV+  +    +S++ L+N  C +G L  A+ + DEM  +  +   
Sbjct: 516 GKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTV 575

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
                +I G C++GN     + LE M   GF  +  +YN ++    K+  +  A  + + 
Sbjct: 576 MICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKK 635

Query: 246 ME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           ME      V D FTY+S++H  C+  ++  A  +L   ++ GV   +S   ++++G    
Sbjct: 636 MEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQ 695

Query: 300 GCRREAKKIQSKI 312
               EA +   ++
Sbjct: 696 DNLTEAFRFHDEM 708



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N LCK+   +        +Q+ G  P++VTYN LI      G +  A  ++  +
Sbjct: 227 TLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAM 286

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +P   TY T++    ++ KY+   E+ + M R G + D   Y +++    K G  
Sbjct: 287 PSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDA 346

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            E  +    M +  V  D+V ++++++L+ + G L+ A +  + +++ G   D   +TIL
Sbjct: 347 VETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTIL 406

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I G C+ G I  A      M + G   ++  YN I+  L K   +  A  +F  M  +  
Sbjct: 407 IQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGL 466

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             DS+T + ++   CK   L +A +L     +  +++       ++DG    G    AK+
Sbjct: 467 FPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKE 526

Query: 308 IQSKI 312
           I + +
Sbjct: 527 IWADM 531



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 141/308 (45%), Gaps = 4/308 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N ++  L +  + + A R+++ + + G    + T NI++  LCK G++      L E+ +
Sbjct: 194 NALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQE 253

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G  P+ +TY T++         +   E++ AM  KG++   + Y TVI    K G+ + 
Sbjct: 254 KGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYER 313

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A +   +M+  G+  D  +Y +L+   CK+G       +  +M  +    D    + ++ 
Sbjct: 314 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMS 373

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
              ++GN+  A ++   + + G   +   Y  ++    + G I  A+N+   M  +    
Sbjct: 374 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAM 433

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309
           D  TY++++H LCK K L  A KL     + G+         ++DG    G  + A ++ 
Sbjct: 434 DVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELF 493

Query: 310 SKIRMAKI 317
            K++  +I
Sbjct: 494 KKMKEKRI 501



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 8/298 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           + F++++    + R    A   F  L+  G+   +   N LI  L + G +  A  I +E
Sbjct: 156 SVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQE 215

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  SG   N  T   ++    ++ K +     LS ++ KG   D   Y T+I+A+   G 
Sbjct: 216 ISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGL 275

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA + M  M + G    + +YNT+IN  CK GK E A  +  EM + G   D  T+  
Sbjct: 276 MEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 335

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           L+   CK G+          M       +L  ++ ++    + G +D A+  F S++   
Sbjct: 336 LLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 395

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
            + D+  Y+ ++   C+   +  A  L    L+ G  +       ++ GL    C+R+
Sbjct: 396 LIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGL----CKRK 449



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 91/186 (48%), Gaps = 2/186 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   +F+I++N LC   +   A R++  +      P ++  N +IKG C++G 
Sbjct: 531 MVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGN 590

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFDGFGY 118
                  L+++   G  P+ I+Y T++    +         ++  M+ K  G   D F Y
Sbjct: 591 ASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTY 650

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            +++  F +  ++KEA   + +M+  GV  D  +Y +LIN +  +  L  A+   DEM +
Sbjct: 651 NSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQ 710

Query: 179 QGFECD 184
           +GF  D
Sbjct: 711 RGFSPD 716



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 130/301 (43%), Gaps = 17/301 (5%)

Query: 29  ALRMFR--GLQKHGFVPELVT-----------YNILIKGLCKAGRLRTARWILKELGDSG 75
            LRM R  G+ +   V  LV+           +++LI+   +A +LR A      L   G
Sbjct: 126 VLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSVFDLLIRTFVQARKLREAYEAFTLLRSKG 185

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           +  +      ++    R    +L   I   + R G   + +    ++ A  K G++++  
Sbjct: 186 YTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVG 245

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
            ++ ++   GV  DIV+YNTLI+ Y  +G +E A+ L+  M  +GF    YT+  +I+GL
Sbjct: 246 TFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGL 305

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDS 251
           CK G  + A+     M + G   +   Y  ++    K G      N+F  M     V D 
Sbjct: 306 CKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDL 365

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
             +SSM+    ++  L  A     S  ++G+         ++ G    G   EA  ++++
Sbjct: 366 VCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNE 425

Query: 312 I 312
           +
Sbjct: 426 M 426



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 4/213 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+N +L+G  K    D A  ++  +     +P  ++++IL+  LC  G L  A  +  
Sbjct: 505 VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWD 564

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+      P  +   +++K   R+     G   L  M  +G+  D   Y T+I  FVK  
Sbjct: 565 EMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEE 624

Query: 130 RLKEATDYMEQMVTD--GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            + +A   +++M     G+  D+ +YN++++ +C+E +++ A  +L +M ++G   D+ T
Sbjct: 625 NMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRST 684

Query: 188 HTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSN 219
           +T LI+G     N+  A R H E + + GF  +
Sbjct: 685 YTSLINGFVSQDNLTEAFRFHDEMLQR-GFSPD 716



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/265 (18%), Positives = 101/265 (38%), Gaps = 61/265 (23%)

Query: 110 GYTFDGFGYCTV-----IAAFVKIGRLKEATDYMEQMV---------------------- 142
           G+ F  F + ++     I   V+ GRL +A   + +M+                      
Sbjct: 93  GFNFPNFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCG 152

Query: 143 ------------------------------TDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
                                         + G  + I + N LI    + G +E A+ +
Sbjct: 153 SNDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRI 212

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
             E+ + G   + YT  I+++ LCK G ++     L  + + G   ++  YN ++     
Sbjct: 213 YQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSS 272

Query: 233 DGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
            G ++ A  +  +M  K      +TY+++++ LCK  +   A ++    L+SG+    + 
Sbjct: 273 QGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTT 332

Query: 289 QKAVVDGLRHSGCRREAKKIQSKIR 313
            ++++      G   E + I S +R
Sbjct: 333 YRSLLMEACKKGDAVETENIFSDMR 357


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 151/316 (47%), Gaps = 12/316 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+NI+++ LC+    + AL +   +++ G  P ++T NI+I  LCKA +L  A
Sbjct: 399 DAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEA 458

Query: 65  RWILKELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             I + + D    PNA+T+++++    KC   +  Y L  ++L      G+      Y +
Sbjct: 459 CSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDC----GHVPGAIVYTS 514

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +F K GR ++     ++MV  G   D+   NT ++   K G+ E    L  E+   G
Sbjct: 515 LIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHG 574

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  D  +++ILI GL KAG           M + G   +  AYN ++D   K GK++ A 
Sbjct: 575 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAY 634

Query: 241 NVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + E M+VK       TY S++  L K  RL  A  L      +G+++      +++DG 
Sbjct: 635 QLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGF 694

Query: 297 RHSGCRREAKKIQSKI 312
              G   EA  I  ++
Sbjct: 695 GKVGRIDEAYLIMEEL 710



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 159/382 (41%), Gaps = 74/382 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T NIM++ LCK +  + A  +F G+      P  VT++ LI GL K GR+  A 
Sbjct: 435 LFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAY 494

Query: 66  WILKELGDSGHAPNAITYT-----------------------------------TIMKCC 90
            + +++ D GH P AI YT                                   T M C 
Sbjct: 495 SLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCV 554

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           F+  + + G  +   +   G+  D   Y  +I   VK G   E  +    M   G  LD 
Sbjct: 555 FKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDT 614

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQG---------------------------FEC 183
            +YN +I+ +CK GK+  AY LL+EM+ +G                           FE 
Sbjct: 615 HAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 674

Query: 184 DK--------YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
            K          ++ LIDG  K G I  A L +E + + G   N+  +NC++D L K  +
Sbjct: 675 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 734

Query: 236 IDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           I+ A+  F+SM+      +  TYS +++ LC+ ++   A        K G++        
Sbjct: 735 INEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTT 794

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
           ++ GL  +G   EA  + S+ +
Sbjct: 795 MISGLAKAGNILEASGLFSRFK 816



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 157/313 (50%), Gaps = 6/313 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P     N  ++ + K   T+    +FR +  HGF+P+  +Y+ILI GL KAG       
Sbjct: 541 SPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYE 600

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +   + + G   +   Y  ++    ++ K     ++L  MK KG+      Y +VI    
Sbjct: 601 LFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLA 660

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KI RL EA    E+  ++G++L++V Y++LI+ + K G+++ AYL+++E+ ++G   + Y
Sbjct: 661 KIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVY 720

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   L+D L KA  I  A +  + M  +    N   Y+ +++ L +  K + A   ++ M
Sbjct: 721 TWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEM 780

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ-KAVVDGLRHSGC 301
           +      ++ TY++M+  L KA  +  AS  L S  K+   I  SA   A+++GL  +  
Sbjct: 781 QKLGLKPNTITYTTMISGLAKAGNILEASG-LFSRFKANGGIPDSASYNAMIEGLSSANK 839

Query: 302 RREAKKIQSKIRM 314
             +A  +  + R+
Sbjct: 840 AMDAYALFEETRL 852



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 125/280 (44%), Gaps = 40/280 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  M+  LCK    D A+ +F  L+++  VP    YN +I G   AG+   A 
Sbjct: 296 LMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAY 355

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+     G  P+ I Y  I+ C  + R+ +  L I   MKR                 
Sbjct: 356 GLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR----------------- 398

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                             D V  ++ +YN LI++ C+EGKL AA  + D+ME+ G   + 
Sbjct: 399 ------------------DAVP-NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNV 439

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  I+ID LCKA  ++ A    E M+      N   ++ ++D LGK G++D A +++E 
Sbjct: 440 LTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEK 499

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           M     V  +  Y+S++ +  K  R     K+    + +G
Sbjct: 500 MLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG 539



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 4/265 (1%)

Query: 10  TATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           ++  +I L   C K+R    A  + + ++K  F P    Y ILI  L +         + 
Sbjct: 159 SSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILF 218

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
            ++ + G+  N   +TT+++   R  +    L +L  MK      D   Y   I  F K 
Sbjct: 219 HQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKA 278

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G++  +  +  +M + G+  D V+Y ++I + CK  +L+ A  L +++E+       Y +
Sbjct: 279 GKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAY 338

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             +I G   AG    A   LE     G   ++ AYNCI+  LGK  +++ A+ +FE M+ 
Sbjct: 339 NTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR 398

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSA 270
             V +  TY+ ++  LC+  +L +A
Sbjct: 399 DAVPNVPTYNILIDMLCREGKLNAA 423



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 6/236 (2%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           PE   YN L+  + +         IL+E+  SG  P++     ++  C ++RK +   +I
Sbjct: 125 PE--AYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDI 182

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           +  M++  +      Y  +I A  ++           QM   G ++++  + TLI ++ +
Sbjct: 183 IQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAR 242

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           EG+++AA  LLDEM+    + D   + + ID   KAG +  +      M   G   +   
Sbjct: 243 EGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVT 302

Query: 223 YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           Y  ++  L K  ++D A+ +FE +E    V  ++ Y++M+     A +   A  LL
Sbjct: 303 YTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLL 358



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 85/197 (43%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
              ++ +++G  K    D A  +   L + G  P + T+N L+  L KA  +  A    +
Sbjct: 684 VVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQ 743

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + D    PN ITY+ ++    R RK+         M++ G   +   Y T+I+   K G
Sbjct: 744 SMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAG 803

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            + EA+    +   +G   D  SYN +I       K   AY L +E   +G      T  
Sbjct: 804 NILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCV 863

Query: 190 ILIDGLCKAGNIKGARL 206
           +L+D L KA  ++ A +
Sbjct: 864 VLLDALHKAECLEQAAI 880



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 2/221 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+  +++GL K    D A  +F   + +G    +V Y+ LI G  K GR+  A  
Sbjct: 646 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYL 705

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           I++EL   G  PN  T+  ++    +  +    L    +MK      +   Y  +I    
Sbjct: 706 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 765

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++ +  +A  + ++M   G++ + ++Y T+I+   K G +  A  L    +  G   D  
Sbjct: 766 RVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSA 825

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
           ++  +I+GL  A     A    E     G   N+    C+V
Sbjct: 826 SYNAMIEGLSSANKAMDAYALFEETRLKG--CNIHTKTCVV 864


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 134/258 (51%), Gaps = 4/258 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           +L  F+ + +      + +  I+I GLCK GR+  A+ ++ E+   G  PN +TY T++ 
Sbjct: 199 SLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVN 258

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              +   ++   E+L  M+     ++   Y  +I  +   G++ EA    E+M+  GV+ 
Sbjct: 259 AYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEA 318

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           DI  + ++I+  CK G ++ A+ L DE+ ++G   + +T+  LI G C +G +  A + +
Sbjct: 319 DIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLV 378

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M   G D NL  +N +++   K G ID A+ + + ME K    D FTY+++   LCK 
Sbjct: 379 NEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKL 438

Query: 265 KRLPSASKLLLSCLKSGV 282
            R   A + L + ++ GV
Sbjct: 439 NRHEEAKRWLFTMVEKGV 456



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 122/256 (47%), Gaps = 39/256 (15%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN ++NG CK    D ALRM   ++K GF  ++ TYN +  GLCK  R   A+  L  + 
Sbjct: 393 FNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMV 452

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  PNA+++T ++                              +C       K G L 
Sbjct: 453 EKGVDPNAVSFTIMIDI----------------------------HC-------KEGNLV 477

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA    + M   G + ++V+YNTLI+ Y K+GKL+ AY L DEME  G   D YT+T L+
Sbjct: 478 EAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLV 537

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            G C  G ++ A   L  + + G   ++  Y  I+  L K+G+ + A  +++ M      
Sbjct: 538 HGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLT 597

Query: 249 KDSFTYSSMVHNLCKA 264
            D   Y+S+V NL K 
Sbjct: 598 PDDRVYTSLVANLHKT 613



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 39/352 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++N   K    +    M R ++    V    TY +LI+    +G++  A 
Sbjct: 246 IKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAE 305

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++ + G   +   +T+I+    +    K    +   +  +G   +   Y  +I   
Sbjct: 306 KVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGT 365

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+L  A   + +M + G+ +++V +NTLIN YCK+G ++ A  + D MEK+GFE D 
Sbjct: 366 CNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDI 425

Query: 186 YTH-----------------------------------TILIDGLCKAGNIKGARLHLEY 210
           +T+                                   TI+ID  CK GN+  A    + 
Sbjct: 426 FTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQD 485

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M K G   N+  YN ++D   K GK+  A  + + ME      D +TY+++VH  C   +
Sbjct: 486 MKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGK 545

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           +  A  LL    + G+ I      A++ GL   G   EA ++  ++  A ++
Sbjct: 546 VEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLT 597



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   +F IM++  CK      A R+F+ ++K G  P +VTYN LI G  K G+
Sbjct: 451 MVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGK 510

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM--KCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           L+ A  +  E+   G   +  TYTT++  +C F   K +  L +L+ + RKG       Y
Sbjct: 511 LKEAYRLKDEMESIGMTSDIYTYTTLVHGECVF--GKVEEALTLLNEVCRKGLAISIVTY 568

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             +I+   K GR +EA    ++M+  G+  D   Y +L+
Sbjct: 569 TAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLV 607



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 133/318 (41%), Gaps = 33/318 (10%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFV----PELVTYNILIKGLCKAGRLRTARWI 67
           T N++L+    N  T + L  F+ LQK+  +    P+L  + ILI  L KA +    + +
Sbjct: 56  TTNLVLSN--PNLPTRSCLNFFKCLQKNQSLICHKPDLRAHVILISRLFKARKFVVMKNV 113

Query: 68  L-----------------KELGDSGHAPNAITY--TTIMKCCFRNRKYKLGLEILSAMKR 108
           L                   + +  H P  +      + +    N  ++ G ++   M  
Sbjct: 114 LTCYAMDKNLRCSVSDFVSLIDNRFHEPKFVEKLCDMLFRVYVDNSMFEEGFKVFDYMVH 173

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G   D       + A  +  ++  +  + ++MV   V + + S   +I+  CK+G++E 
Sbjct: 174 NGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVER 233

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR--LHLEYMNKIGFDSNLEAYNCI 226
           A  L+ EM  +G + +  T+  L++   K  + +G    L L  M+K+ +  N   Y  +
Sbjct: 234 AKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVY--NAATYTLL 291

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++  G  GKI  A  VFE M  +    D   ++S++   CK   +  A  L     + G+
Sbjct: 292 IEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGL 351

Query: 283 RILKSAQKAVVDGLRHSG 300
                   A++ G  +SG
Sbjct: 352 VANAHTYGALIHGTCNSG 369



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 53/116 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++G  K      A R+   ++  G   ++ TY  L+ G C  G++  A  +
Sbjct: 493 PNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTL 552

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           L E+   G A + +TYT I+    +  + +    +   M   G T D   Y +++A
Sbjct: 553 LNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVA 608


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 156/320 (48%), Gaps = 7/320 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKAG 59
           MI   L P + TFN +L  L K+ + + A R+F   +  G V  ++ ++ I+IKG C+ G
Sbjct: 121 MIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFN--ETKGNVKLDVYSFGIMIKGCCEVG 178

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            L     +L ++ + G +PN + YTT++  C +N   + G ++   M       + + Y 
Sbjct: 179 YLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYT 238

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I  F K+G  K+  +  E+M   G+  ++ +YN++I   C +GKL  A+ L DEM ++
Sbjct: 239 VLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRER 298

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G  C+  T+  LI GLC+   +  A   +  M + G   NL +YN ++D     G +D A
Sbjct: 299 GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 358

Query: 240 INVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            ++F  M    +     TY+ ++    +AK     + ++      G+   K     ++D 
Sbjct: 359 SSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDA 418

Query: 296 LRHSGCRREAKKIQSKIRMA 315
           L  S    +A +I S +  A
Sbjct: 419 LVRSDNIEKAFQIYSSMEKA 438



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 8/284 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N M+   C +   +NA  +F  +++ G    +VTYN LI GLC+  R+  A 
Sbjct: 265 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAE 324

Query: 66  WILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            ++  +   G +PN I+Y T++   C   N      L   + MK  G +     Y  +IA
Sbjct: 325 RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSL--FNQMKSSGQSPSLATYNILIA 382

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F +       TD + +M   G+    V+Y  L++   +   +E A+ +   MEK G   
Sbjct: 383 GFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVA 442

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D Y + +LI GLC  G++K A    + ++++    N   YN ++    K+G    A+ + 
Sbjct: 443 DIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLL 502

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           + M     V +  +Y+S +  LCK ++   A  LL   ++ G++
Sbjct: 503 KEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLK 546



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 110/221 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   ++N +++G C     D A  +F  ++  G  P L TYNILI G  +A       
Sbjct: 335 LSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVT 394

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++E+   G +P+ +TYT +M    R+   +   +I S+M++ G   D + Y  +I   
Sbjct: 395 DMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGL 454

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +G +KEA+   + +    ++ + V YNT+I  YCKEG    A  LL EM + G   + 
Sbjct: 455 CVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNV 514

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
            ++   I  LCK      A + L+ M ++G   ++  +N I
Sbjct: 515 ASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 555



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N M+ G CK   +  ALR+ + + ++G VP + +YN  I+ LCK  +   A 
Sbjct: 475 LKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAE 534

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRN 93
            +LK++ + G  P+   +  I K  F N
Sbjct: 535 VLLKDMIELGLKPSISIWNMISKARFDN 562


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 147/279 (52%), Gaps = 5/279 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D  P   +++I+++ LCKNR  + A+ +F  ++  G  P +VTYN LI G+C +G+
Sbjct: 235 MVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQ 294

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  + KE+ +    P+ +T++ ++    +       L +   M +     D   Y +
Sbjct: 295 WKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSS 354

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K    KE++  + +M++  ++ D+V+++  ++++CK+G +  A  +++ M ++G
Sbjct: 355 LIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERG 414

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  L+DG C    +  AR   + M   G   ++ +YN ++    K  +ID A 
Sbjct: 415 LRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAK 474

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
            +F+ M  K    +S T+++++  LC+A R P A+K L 
Sbjct: 475 QLFDEMSHKGLTPNSITHTTLISGLCQAGR-PYAAKELF 512



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 140/280 (50%), Gaps = 4/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   TF+I+++ LCK      AL +F  + +    P++VTY+ LI G+CK+  
Sbjct: 305 MLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSL 364

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + +  +L E+      P+ +T++  +    +         I++ M  +G   +   Y +
Sbjct: 365 WKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNS 424

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +    ++ EA    + MV  G   D++SYN LI  YCK  +++ A  L DEM  +G
Sbjct: 425 LMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKG 484

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  THT LI GLC+AG    A+   + M   G   +L  Y+ ++    K G +D A+
Sbjct: 485 LTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEAL 544

Query: 241 NVFESM---EVKDSFTYSS-MVHNLCKAKRLPSASKLLLS 276
            +FE++   ++K +      ++  +CKA +L  A +L  S
Sbjct: 545 ALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSS 584



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 6/306 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC   FN +L  L + ++ D+ + ++R ++  G    + T  ILI  LC    +     +
Sbjct: 102 PCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSV 161

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L ++   G  P+ IT+ T++   C   R  +  +E L  +  +GY    + +  ++    
Sbjct: 162 LGKIFKLGFKPSIITFNTLINGLCIEGRIVE-AMEQLDYIMSRGYQPTVYTHTMIVNGLC 220

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KIG+   A  +M++MV    + ++VSY+ +I+  CK   +  A  L   M   G      
Sbjct: 221 KIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVV 280

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LI G+C +G  K A +  + M +     ++  ++ +VD L K+G +  A++VF  M
Sbjct: 281 TYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKM 340

Query: 247 ----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                  D  TYSS++H +CK+     +S LL   L   +R         VD     G  
Sbjct: 341 IQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMV 400

Query: 303 REAKKI 308
            EA+ I
Sbjct: 401 SEAQSI 406



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 144/309 (46%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T  +++NGLCK   T  A+   + + +    PE+V+Y+I+I  LCK   +  A  +
Sbjct: 207 PTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDL 266

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +   G +P  +TY +++     + ++K    +   M       D   +  ++ A  K
Sbjct: 267 FYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCK 326

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + EA     +M+   ++ DIV+Y++LI+  CK    + +  LL+EM  +    D  T
Sbjct: 327 EGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVT 386

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +I +D  CK G +  A+  +  M + G   N+  YN ++D      ++D A  VF+ M 
Sbjct: 387 FSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMV 446

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    D  +Y+ ++   CK++R+  A +L       G+         ++ GL  +G   
Sbjct: 447 NKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPY 506

Query: 304 EAKKIQSKI 312
            AK++  K+
Sbjct: 507 AAKELFKKM 515



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 119/250 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T++ +++G+CK+     +  +   +      P++VT++I +   CK G 
Sbjct: 340 MIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGM 399

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ I+  + + G  PN +TY ++M     + +     ++   M  KG   D   Y  
Sbjct: 400 VSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNI 459

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K  R+ EA    ++M   G+  + +++ TLI+  C+ G+  AA  L  +M   G
Sbjct: 460 LIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHG 519

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T++ L+ G CK G++  A    E + K     N      ++  + K GK++ A 
Sbjct: 520 CPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAK 579

Query: 241 NVFESMEVKD 250
            +F S+ +++
Sbjct: 580 ELFSSLSIEE 589



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 2/185 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+N +++G C +   D A ++F  +   G  P++++YNILIKG CK+ R
Sbjct: 410 MIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSER 469

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A+ +  E+   G  PN+IT+TT++   C   R Y    E+   M   G   D   Y 
Sbjct: 470 IDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYA-AKELFKKMGSHGCPPDLITYS 528

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+++ F K G L EA    E +    ++ + V    L+   CK GKLE A  L   +  +
Sbjct: 529 TLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIE 588

Query: 180 GFECD 184
             + D
Sbjct: 589 ELQPD 593


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 5/304 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           + +FNI++ GLC+    D A  +F  ++  G  P+++TYN LI G C+   +     +LK
Sbjct: 237 SCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLK 296

Query: 70  EL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           EL   +  +P+ +TYT+I+    +  K +    + + M   G   + F +  +I  F K+
Sbjct: 297 ELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKV 356

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G +  A +  E+M+  G   DI+++ +LI+ +C+ GK+E +  L  E+  +    ++YT 
Sbjct: 357 GDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTF 416

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            IL + LCK   +  AR  L  +      +    YN ++D   K G +D A  +   ME 
Sbjct: 417 AILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEE 476

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           K    D  TY+ ++   C   RL  A  +    L +G         +++  L  +G   E
Sbjct: 477 KRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNE 536

Query: 305 AKKI 308
           A +I
Sbjct: 537 AYRI 540



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 102/200 (51%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL+P   T+  +++G CK    + A  +F  +   G  P   T+NILI G  K G + +A
Sbjct: 303 DLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSA 362

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + +E+   G  P+ IT+T+++    R  K +  L++   +  +  + + + +  +  A
Sbjct: 363 ENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNA 422

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K  RL EA  ++  +    +      YN +I+ +CK G ++ A ++L EME++  + D
Sbjct: 423 LCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPD 482

Query: 185 KYTHTILIDGLCKAGNIKGA 204
           K T+TILI G C  G +  A
Sbjct: 483 KITYTILIIGHCMKGRLSEA 502



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 89/199 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   TFNI++NG  K     +A  M+  +   G  P+++T+  LI G C+ G+
Sbjct: 334 MISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGK 393

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +  +  EL     +PN  T+  +     +  +       L  +K +      F Y  
Sbjct: 394 VERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNP 453

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K G + EA   + +M     + D ++Y  LI  +C +G+L  A  + + M   G
Sbjct: 454 VIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTG 513

Query: 181 FECDKYTHTILIDGLCKAG 199
              D  T T LI  L KAG
Sbjct: 514 CAPDSITMTSLISCLLKAG 532



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 35/262 (13%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL------GL 100
           TY+ L++ L + G   +A+ +   +   GH+P+A     ++       K+ +      G+
Sbjct: 139 TYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIARTWVDGV 198

Query: 101 E--------ILSAMKRKGYT----------------FDGFGYCTVIAAFVKIGRLKEATD 136
           E        +L+ + R                    FD   +  +I    +IG++ +A +
Sbjct: 199 EFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFE 258

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE-MEKQGFECDKYTHTILIDGL 195
              +M   G   D+++YNTLIN +C+  +++  + LL E + K     D  T+T +I G 
Sbjct: 259 LFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGY 318

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDS 251
           CK G ++ A +    M   G   N   +N +++  GK G +  A N++E M +     D 
Sbjct: 319 CKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDI 378

Query: 252 FTYSSMVHNLCKAKRLPSASKL 273
            T++S++   C+  ++  + KL
Sbjct: 379 ITFTSLIDGHCRTGKVERSLKL 400


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 156/340 (45%), Gaps = 39/340 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++ LCKN     A +MF  + K G  PE+ TY  L++G    G L     +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  +G  PN   ++ ++    +  K    + + S M+++G   D   Y TVI    K
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421

Query: 128 IGRLKEATDYMEQMVTD-----------------------------------GVQLDIVS 152
            GR+++A  Y EQM+ +                                   G+ LD + 
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +N++I+ +CKEG++  +  L D M + G + D  T++ LIDG C AG +  A   L  M 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
            +G   +   YN +++   K  +++ A+ +F  ME      D  TY+ ++  L + +R  
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +A +L +   +SG ++  S    ++ GL  +    EA ++
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 147/302 (48%), Gaps = 42/302 (13%)

Query: 13  FNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK-- 69
           F  +L GLC ++ T +A+ +  R + + G +P + +YNIL+KGLC   R + A  +L+  
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 70  -----------------------------------ELGDSGHAPNAITYTTIMKCCFRNR 94
                                              E+ D G  PN +TY++I+    + +
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQ 248

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
                +E+L++M + G   +   Y +++  +   G+ KEA  ++++M +DGV+ D+V+YN
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +L++  CK G+   A  + D M K+G + +  T+  L+ G    G +      L+ M + 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           G   N   ++ ++    K GK+D A+ VF  M  +    D+ TY +++  LCK+ R+  A
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 271 SK 272
            +
Sbjct: 429 MR 430



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 4/283 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   ++  ++NG  K    D A   +  +   G +P +VTY+ +I  LCKA  +  
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  PN  TY +I+     + + K  +  L  M   G   D   Y +++ 
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMD 312

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ +I +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + Y  +ILI    K G +  A L    M + G + +   Y  ++  L K G+++ A+  F
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           E M        +  Y+S++H+LC   +   A +L+L  L  G+
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 149/307 (48%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ ++  LCK +  D A+ +   + K+G +P   TYN ++ G C +G+ + A 
Sbjct: 230 ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAI 289

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     ++  +M ++G   +   Y T++  +
Sbjct: 290 GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ LI  Y K+GK++ A L+  +M +QG   D 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G ++ A  + E M           YN ++  L    K D A  +   
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILE 469

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D+  ++S++ + CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 302 RREAKKI 308
             EA K+
Sbjct: 530 MDEATKL 536



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    D A+ +F  +++ G  P+ VTY  +I  LCK+GR
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D   +P  I Y +++       K+    E++  M  +G   D   + +
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ DI++Y+TLI+ YC  GK++ A  LL  M   G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D  T+  LI+G CK   ++ A +    M   G   ++  YN I+  L +  +   A 
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + ES    +  TY+ ++H LCK      A ++  +   + +++       ++  L
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 665 LKVGRNDEAKDL 676



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 5/246 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ I++   C     D        + K GF  + + +  L+KGLC   R   A
Sbjct: 86  EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145

Query: 65  -RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCT 120
              +L+ +   G  PN  +Y  ++K  C  NR  +  LE+L  M   G     D   Y T
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE-ALELLQMMPDDGGDCPPDVVSYTT 204

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K G L +A     +M+  G+  ++V+Y+++I   CK   ++ A  +L  M K G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  ++ G C +G  K A   L+ M+  G + ++  YN ++D L K+G+   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 241 NVFESM 246
            +F+SM
Sbjct: 325 KMFDSM 330



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 7/249 (2%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
            P L TY ILI   C AGRL      L  +   G   +AI +T ++K    +++    ++
Sbjct: 88  TPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMD 147

Query: 102 I-LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLIN 158
           I L  M + G   + F Y  ++       R +EA + ++ M  DG     D+VSY T+IN
Sbjct: 148 IVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            + KEG L+ AY    EM  +G   +  T++ +I  LCKA  +  A   L  M K G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           N   YN IV      G+   AI   + M       D  TY+S++  LCK  R   A K+ 
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 275 LSCLKSGVR 283
            S  K G++
Sbjct: 328 DSMTKRGLK 336



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G C     D A ++   +   G  P+ VTYN LI G CK  R+  A  +
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+  SG +P+ ITY  I++  F+ R+     E+   +   G   +   Y  ++    K
Sbjct: 572 FREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    + +    +QL+  ++N +I    K G+ + A  L   +   G   D  T
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRT 691

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           ++++ + L + G ++        M + G  +N    N IV +L + G I  A
Sbjct: 692 YSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 47/266 (17%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           IC D    T  FN +++  CK      + ++F  + + G  P+++TY+ LI G C AG++
Sbjct: 475 ICLD----TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  +L  +   G  P+ +TY T++                             GYC  
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLIN----------------------------GYC-- 560

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
                KI R+++A     +M + GV  DI++YN ++    +  +  AA  L   + + G 
Sbjct: 561 -----KISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE--AYNCIVDRLGKDGKIDHA 239
           + +  T+ I++ GLCK  N+    L + + N    D  LE   +N ++  L K G+ D A
Sbjct: 616 QLELSTYNIILHGLCK-NNLTDEALRM-FQNLCLTDLQLETRTFNIMIGALLKVGRNDEA 673

Query: 240 INVFESME----VKDSFTYSSMVHNL 261
            ++F ++     V D  TYS M  NL
Sbjct: 674 KDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 2/222 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NG CK    ++AL +FR ++  G  P+++TYNI+++GL +  R
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +   + +SG      TY  I+    +N      L +   +       +   +  
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A +K+GR  EA D    +  +G+  D+ +Y+ +     ++G LE    L   ME+ G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
              +      ++  L + G+I  A  +L  +++  F  +LEA
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHF--SLEA 759



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 97/248 (39%), Gaps = 44/248 (17%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY--MEQMVTDGVQLDIVSYNTLINL 159
           +   + R+G     +G    +A   +       + Y  M +   D V  ++ +Y  LI  
Sbjct: 41  VFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGILIGS 100

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDS 218
            C  G+L+  +  L  + K+GF  D    T L+ GLC       A  + L  M ++G   
Sbjct: 101 CCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIP 160

Query: 219 NLEAYN-------------------------------------CIVDRLGKDGKIDHAIN 241
           N+ +YN                                      +++   K+G +D A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
            +  M     + +  TYSS++  LCKA+ +  A ++L S +K+GV        ++V G  
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 298 HSGCRREA 305
            SG  +EA
Sbjct: 281 SSGQPKEA 288


>gi|357166198|ref|XP_003580632.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Brachypodium distachyon]
          Length = 644

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 144/315 (45%), Gaps = 8/315 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTA 64
           + P   T+N +L+GL      D A+ +F  +     V P++V+YNILIKG C+AGR + A
Sbjct: 204 VEPSRVTYNCLLDGLANAGLLDTAINVFDAMSTEDRVRPDVVSYNILIKGYCRAGRAQDA 263

Query: 65  RWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD--GFGYCTV 121
              L  + +    +P+ +TY T+M+  +    +   + +   M+  G   D     Y  V
Sbjct: 264 MARLAHMREQAELSPDKVTYLTLMQLHYSEGTFSQCIRLFQEMEEMGMGKDIPQHAYVLV 323

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I A  K G+  E     E+M+  G       Y  LI+   K G+   A LL + M+  G 
Sbjct: 324 IGALCKEGKPFEGLAVFERMLKSGYPAKAAMYTALIDTMGKFGRENEAMLLFERMKASGL 383

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E D  T+ ++++ LC+ G +  A L      + G   N   Y  ++D  GK G +D A  
Sbjct: 384 ELDAITYGVIVNCLCRFGKLDEAILCFRNCVEKGIAVNAIFYTSLIDGFGKAGMVDQAQE 443

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +FE M+VK    DS+ Y+ ++  L KA RL  A  L       G          ++DGL 
Sbjct: 444 LFEEMKVKGFVPDSYCYNVLIDGLAKAGRLDDACALYKRMEDDGCDQTVYTYTIIIDGLF 503

Query: 298 HSGCRREAKKIQSKI 312
                 EA K  + +
Sbjct: 504 KKHKNEEAIKFWNTM 518



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 137/317 (43%), Gaps = 45/317 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP ++    ++  L      D  L  +  ++  G  P  VTYN L+ GL  AG L TA 
Sbjct: 171 LTPPSSA--SLIRSLAALGLADELLWAWSAMRLAGVEPSRVTYNCLLDGLANAGLLDTAI 228

Query: 66  WILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +   +       P+ ++Y  ++K                            GYC     
Sbjct: 229 NVFDAMSTEDRVRPDVVSYNILIK----------------------------GYC----- 255

Query: 125 FVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             + GR ++A   +  M     +  D V+Y TL+ L+  EG       L  EME+ G   
Sbjct: 256 --RAGRAQDAMARLAHMREQAELSPDKVTYLTLMQLHYSEGTFSQCIRLFQEMEEMGMGK 313

Query: 184 D--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           D  ++ + ++I  LCK G         E M K G+ +    Y  ++D +GK G+ + A+ 
Sbjct: 314 DIPQHAYVLVIGALCKEGKPFEGLAVFERMLKSGYPAKAAMYTALIDTMGKFGRENEAML 373

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +FE M+      D+ TY  +V+ LC+  +L  A     +C++ G+ +      +++DG  
Sbjct: 374 LFERMKASGLELDAITYGVIVNCLCRFGKLDEAILCFRNCVEKGIAVNAIFYTSLIDGFG 433

Query: 298 HSGCRREAKKIQSKIRM 314
            +G   +A+++  ++++
Sbjct: 434 KAGMVDQAQELFEEMKV 450



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 1/188 (0%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G  K    D A  +F  ++  GFVP+   YN+LI GL KAGRL  A  + K + 
Sbjct: 425 YTSLIDGFGKAGMVDQAQELFEEMKVKGFVPDSYCYNVLIDGLAKAGRLDDACALYKRME 484

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G      TYT I+   F+  K +  ++  + M  KG T     + T        G+  
Sbjct: 485 DDGCDQTVYTYTIIIDGLFKKHKNEEAIKFWNTMIDKGITPTAAAFRTFANGLCLSGKFS 544

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A   ++++   GV +   ++  +IN+ CK G+ + A  L D + ++G E      T++I
Sbjct: 545 RACRILDELAPMGV-IPETAHEDMINVLCKAGRFKQACKLADGIVQKGREIPGRVRTMMI 603

Query: 193 DGLCKAGN 200
             L KAGN
Sbjct: 604 TALRKAGN 611



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   +TP  A F    NGLC +     A R+   L   G +PE   +  +I  LCKAGR
Sbjct: 518 MIDKGITPTAAAFRTFANGLCLSGKFSRACRILDELAPMGVIPE-TAHEDMINVLCKAGR 576

Query: 61  LRTA 64
            + A
Sbjct: 577 FKQA 580


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 137/283 (48%), Gaps = 41/283 (14%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + + GF P++VTY+ +I GLCK G++  A  +++E+ + G  P+  TYT I         
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTII--------- 51

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                                     +    + G++ EA +   +M+  G   + V+YN 
Sbjct: 52  --------------------------VDRLCRAGKVDEADELFHKMIERGCSANTVAYNA 85

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LIN  CK+  +E AY LL+EM  +G+E D  T+  ++ GLC+ G +  A+   + M   G
Sbjct: 86  LINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRG 145

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------FTYSSMVHNLCKAKRLPS 269
           +  ++ AYN ++D L K+GK+  A  +F++M++ D        TY++++   C+ ++   
Sbjct: 146 YSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDE 205

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           A KL    +  G         +++ GL       EA+++  K+
Sbjct: 206 AMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 152/319 (47%), Gaps = 6/319 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P  AT++I+L+G C+       L ++  + +  F P+++  N +I  LCKA +
Sbjct: 248 MVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKK 307

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+E+   G  P+ +TY  ++    +        E+ S M   G   D   Y  
Sbjct: 308 VDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSV 367

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+    K  ++ +A    ++M+   +  D+V++N L++  CK GKL+ A  LLD M +  
Sbjct: 368 VLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHN 427

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T T L+ GLC+      A    +YM + G  +++  +N ++  L ++GK+  A+
Sbjct: 428 VLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQAL 487

Query: 241 NVFESME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
             F+SM         D  TY+++V+ L +A R+  A         SG      A   +++
Sbjct: 488 LFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMN 547

Query: 295 GLRHSGCRREAKKIQSKIR 313
           GLR  G   +A ++   ++
Sbjct: 548 GLRKQGRHIQADRLTQAMK 566



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 6/297 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P  AT+ I+++ LC+    D A  +F  + + G     V YN LI GLCK   +  A 
Sbjct: 41  VNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAY 100

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+   G+ P+ ITY TI+    R  K     +   +M  +GY+ D   Y  ++ A 
Sbjct: 101 KLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL 160

Query: 126 VKIGRLKEATDYME--QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            K G++ EA    +   M    V  D+++YNTLI+ +C+  K + A  L  ++  +G+  
Sbjct: 161 YKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMP 220

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  ++ GL +  N+  A    + M   G   N   Y+ ++    + G +   + ++
Sbjct: 221 DTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELY 280

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           E M  K    D    ++++  LCKAK++  A K+L    K G          ++DGL
Sbjct: 281 EEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGL 337



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 39/273 (14%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++G C+   TD A+++F+ +   G++P+ VTYN ++ GL +   +  A 
Sbjct: 183 VAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAE 242

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K++ DSG APN  TY+ ++                             G+C      
Sbjct: 243 EMFKKMVDSGCAPNGATYSIVLS----------------------------GHC------ 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++G +    +  E+M       D++  N +I++ CK  K++ A+ +L+EM K G   D 
Sbjct: 269 -RVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDV 327

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ IL+DGLCK   +  A      M   G   ++ +Y+ +++ L K  K+  A  +F+ 
Sbjct: 328 VTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDR 387

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           M     V D  T++ ++  LCKA +L  A  LL
Sbjct: 388 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLL 420



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 128/262 (48%), Gaps = 6/262 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++GLCK      AL M   + + G  P++ TY I++  LC+AG++  A  +
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++ + G + N + Y  ++    ++   +   ++L  M  KGY  D   Y T+++   +
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD--EMEKQGFECDK 185
           +G++ EA  + + M + G   D+V+YN L++   KEGK+  A+ L    +M  +    D 
Sbjct: 128 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDL 187

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDG C+      A    + +   G+  +   YN I+  L +   +D A  +F+ 
Sbjct: 188 ITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKK 247

Query: 246 ME----VKDSFTYSSMVHNLCK 263
           M       +  TYS ++   C+
Sbjct: 248 MVDSGCAPNGATYSIVLSGHCR 269



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 2/244 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+L+GLCK    D A  +F  +  +G  P++V+Y++++ GLCK  ++  AR +
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 384

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              + +    P+ +T+  +M    +  K     ++L  M       DG    T++    +
Sbjct: 385 FDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCR 444

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG--FECDK 185
             R  EA    + MV  G   D++ +N ++   C+EGKL  A L    M K    F  D 
Sbjct: 445 DKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDV 504

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T L++ L +AG +  A  + + M   G   +  AYN +++ L K G+   A  + ++
Sbjct: 505 VTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQA 564

Query: 246 MEVK 249
           M+ K
Sbjct: 565 MKEK 568



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   +++++LNGLCK     +A  +F  + +   VP++VT+NIL+ GLCKAG+
Sbjct: 353 MVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGK 412

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ +L  + +    P+ +T TT+M    R+++    + +   M  KG   D   +  
Sbjct: 413 LDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNI 472

Query: 121 VIAAFVKIGRLKEATDYMEQMV-TDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           V+A   + G+L +A  + + MV +DG    D+V+Y TL+N   + G+++ A     +M  
Sbjct: 473 VLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTG 532

Query: 179 QGFECDKYTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSN 219
            G   D   +  L++GL K G +I+  RL  + M + GF S+
Sbjct: 533 SGCAPDYVAYNTLMNGLRKQGRHIQADRL-TQAMKEKGFLSD 573



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 4/179 (2%)

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           M   G + D+V+Y+T+I+  CK GK+  A  +++EM ++G   D  T+TI++D LC+AG 
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSS 256
           +  A      M + G  +N  AYN +++ L KD  I+ A  + E M  K    D+ TY++
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
           ++  LC+  ++  A +   S    G      A   ++D L   G   EA  +   + MA
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMA 179



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           NI+L GLC+      AL  F+ + K    F P++VTY  L+  L +AGR+  A    +++
Sbjct: 471 NIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQM 530

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
             SG AP+ + Y T+M    +  ++     +  AMK KG+  D F
Sbjct: 531 TGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 575


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 142/271 (52%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN++++ LCK      A ++   +   G VP  VTYN L+ GLC  G+L  A  +
Sbjct: 68  PNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSL 127

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  +   PN IT+ T++    ++ +   G+ +L +++ KGY  + F Y ++I+   K
Sbjct: 128 LNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFK 187

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +      ++MV  G + + + Y+ LI+  C+EGK + A   L EM+ +G   + +T
Sbjct: 188 EGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFT 247

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+ G  +AG+I  A L  + M     + +   Y+ +++ L K+GK+  A+ V++ M 
Sbjct: 248 YSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQML 307

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    D   YSSM+H  C A+ +    KL 
Sbjct: 308 SRGIKLDVVAYSSMIHGFCNAQLVEQGMKLF 338



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 123/245 (50%), Gaps = 6/245 (2%)

Query: 19  GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
            LC+    D A+ +FRG+     V +  TY+ L+ GLC  GR+  A  +L E+   G  P
Sbjct: 9   ALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFP 68

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N + +  ++    +        +++  M  KG   +   Y +++      G+L +A   +
Sbjct: 69  NPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLL 128

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
            +MV +    + +++ TL++ + K G+      +L  +E++G+  ++++++ LI GL K 
Sbjct: 129 NRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKE 188

Query: 199 GNIK-GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
           G  + G +L  E + K G   N   Y+ ++D L ++GK D A      M+ K    +SFT
Sbjct: 189 GKGEHGMQLWKEMVEK-GCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFT 247

Query: 254 YSSMV 258
           YSS++
Sbjct: 248 YSSLM 252



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 119/248 (47%), Gaps = 2/248 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TF  +++G  K+    + +R+   L++ G+     +Y+ LI GL K G+
Sbjct: 131 MVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGK 190

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 + KE+ + G  PN I Y+ ++    R  K     E L  MK KG+T + F Y +
Sbjct: 191 GEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSS 250

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + + G + +A    ++M  +      V Y+ LIN  CK GKL+ A ++  +M  +G
Sbjct: 251 LMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRG 310

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            + D   ++ +I G C A  + +G +L  + + +      ++  YN +++       +  
Sbjct: 311 IKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSR 370

Query: 239 AINVFESM 246
           AI++  +M
Sbjct: 371 AIDILNTM 378



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 20/266 (7%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  ++ +++GLC+    D A      ++  G  P   TY+ L+ G  +AG +  A  +
Sbjct: 208 PNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILV 267

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+ D+    + + Y+ ++    +N K K  L +   M  +G   D   Y ++I  F  
Sbjct: 268 WKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCN 327

Query: 128 IGRLKEATDYMEQMV--TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              +++      QM+     +Q D+V+YN L+N +C +  +  A  +L+ M  QG + D 
Sbjct: 328 AQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDF 387

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  I +  L    N+   +   E++++            +V RL K  +   A N+ E 
Sbjct: 388 ITCDIFLKTL--RDNMDPPQDGREFLDE------------LVVRLIKRQRTVGASNIIEV 433

Query: 246 MEVK----DSFTYSSMVHNLCKAKRL 267
           M  K       T++  V  LCK  ++
Sbjct: 434 MLQKFLLPKPSTWALAVQQLCKPMKV 459



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           ++  LC+ GN+  A      M+     ++   Y+ ++  L  +G+ID A+++ + M+V+ 
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 251 SFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           +F     ++ ++  LCK   L  ASKL+ +    G    +    ++V GL
Sbjct: 66  TFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGL 115


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 147/303 (48%), Gaps = 36/303 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ ++L  +CKN   + A+ +   ++  G  P +VTYN++I G+C+ GR+  AR +
Sbjct: 175 PNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDL 234

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  L   G  P+ ++YTT++K    ++++    E+ + M  K    +   +  +I  F +
Sbjct: 235 LNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCR 294

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A   ++QM       +    N +IN  CK+G+++ A+  L+ M   G   D  +
Sbjct: 295 GGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTIS 354

Query: 188 HTILIDGLCKA-----------------------------------GNIKGARLHLEYMN 212
           +T ++ GLC+A                                   G I+ A + +E M 
Sbjct: 355 YTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQ 414

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSAS 271
           + G    +  YN +V+     G ID A+ +F SM  K ++ TY++++  LC A+RL +A+
Sbjct: 415 EHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDAAA 474

Query: 272 KLL 274
           +L+
Sbjct: 475 ELV 477



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 133/266 (50%), Gaps = 7/266 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N ++ G C+  + D A R+   +      P+  TY  LI+ LC  GR+  A  +L ++ 
Sbjct: 113 YNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDML 169

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN +TYT +++   +N  ++  + +L  M+ KG T +   Y  +I    + GR+ 
Sbjct: 170 RRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 229

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A D + ++ + G Q D VSY TL+   C   + +    L  EM ++    ++ T  +LI
Sbjct: 230 DARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLI 289

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
              C+ G ++ A   L+ M +    +N    N +++ + K G++D A     +M      
Sbjct: 290 RFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCN 349

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D+ +Y++++  LC+A+R   A +LL
Sbjct: 350 PDTISYTTVLKGLCRAERWNDAKELL 375



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 155/340 (45%), Gaps = 38/340 (11%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   NI++N +CK    D+A +    +  +G  P+ ++Y  ++KGLC+A R   A+ +LK
Sbjct: 317 TTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLK 376

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF---------DGF---- 116
           E+  +   PN +T+ T +    +    +  + ++  M+  G T          +GF    
Sbjct: 377 EMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQG 436

Query: 117 -------------------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
                               Y T++       RL  A + + +M+      ++V++N L+
Sbjct: 437 HIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLV 496

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           N +C++G L+ A  L+++M + G   +  T+  L DG+ K  + + A   L  +   G  
Sbjct: 497 NFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVS 556

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFE-----SMEVKDSFTYSSMVHNLCKAKRLPSASK 272
            ++  ++ I+  L K+ +++ AI +F       M  K +  Y+ ++  LCK   + +A  
Sbjct: 557 PDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPK-ALVYNKILLGLCKRHEIDNAID 615

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            L   + +G    +S    +++GL   G  +EA+ + S +
Sbjct: 616 FLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSML 655



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 131/279 (46%), Gaps = 7/279 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF++++   C+    + A+++ + + +H         NI+I  +CK GR+  A   
Sbjct: 280 PNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKF 339

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +G  G  P+ I+YTT++K   R  ++    E+L  M R     +   + T I    +
Sbjct: 340 LNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQ 399

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +++A   +EQM   G  + +V+YN L+N +C +G +++A  L   M  +    +  T
Sbjct: 400 KGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKP---NTIT 456

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+ GLC A  +  A   +  M       N+  +N +V+   + G +D AI + E M 
Sbjct: 457 YTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMM 516

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                 +  TY+++   + K      A +LL   +  GV
Sbjct: 517 EHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGV 555



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 127/286 (44%), Gaps = 7/286 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   TFN  +  LC+    + A+ +   +Q+HG    +VTYN L+ G C  G 
Sbjct: 378 MVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGH 437

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A  + + +      PN ITYTT++       +     E+++ M  +    +   +  
Sbjct: 438 IDSALELFRSMP---CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNV 494

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + G L EA + +EQM+  G   ++++YNTL +   K+   E A  LL  +  +G
Sbjct: 495 LVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKG 554

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T + +I  L K   ++ A         IG       YN I+  L K  +ID+AI
Sbjct: 555 VSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAI 614

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +    M     + +  TY  ++  L +   L  A  LL      GV
Sbjct: 615 DFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGV 660



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 7/242 (2%)

Query: 37  QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96
            + G  P++     LI+ LC+ GR   A  +L+    SG   +   Y T++    R    
Sbjct: 67  SRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHL 126

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
                ++ +M       D + Y  +I      GR+ +A   ++ M+  G Q ++V+Y  L
Sbjct: 127 DAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVL 183

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           +   CK    E A  +LDEM  +G   +  T+ ++I+G+C+ G +  AR  L  +   G 
Sbjct: 184 LEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGC 243

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVF-ESME---VKDSFTYSSMVHNLCKAKRLPSASK 272
             +  +Y  ++  L    + D    +F E ME   + +  T+  ++   C+   +  A +
Sbjct: 244 QPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQ 303

Query: 273 LL 274
           +L
Sbjct: 304 VL 305



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           L  +E    AA L+     + G   D Y  T LI  LC+ G    A   L      G   
Sbjct: 49  LIAREDLAGAARLVELSASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPV 108

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEV-KDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
           ++ AYN +V    + G +D A  +  SM V  D++TY+ ++  LC   R+  A  LL   
Sbjct: 109 DVFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDM 168

Query: 278 LKSGVR--------ILKSAQK--------AVVDGLRHSGC 301
           L+ G +        +L++  K        AV+D +R  GC
Sbjct: 169 LRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGC 208


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 143/310 (46%), Gaps = 41/310 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +  ++N  CK      A  +F  + +   VP   TY  LI G CKAG 
Sbjct: 284 MLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGE 343

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  ++ ++   G   N + + T+M    +       L + + M++KG+  D F  C 
Sbjct: 344 MKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFT-CN 402

Query: 121 VIAA-FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE---------------- 163
           +IA+ F +  R +EA   +  M   GV  ++VS++ LI++YCKE                
Sbjct: 403 IIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKK 462

Query: 164 -------------------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
                              GK+E AY L++EM+++G   D YT+T LIDG   +GN+  A
Sbjct: 463 GKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRA 522

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
                 M ++G + N+  Y  I+  L KDG+ D A  +++ M     V D   YSS++ +
Sbjct: 523 LELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIAS 582

Query: 261 LCKAKRLPSA 270
           L K   L S 
Sbjct: 583 LHKVGPLVSG 592



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 146/306 (47%), Gaps = 8/306 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++C    P   T+N +LNG  + +       +   ++K+     + TY +LI+   ++ +
Sbjct: 214 LVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSK 273

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           +  A  +  E+   G  P+   YT+I+   C F N K    L     M  +    + + Y
Sbjct: 274 IEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVL--FDEMTERRLVPNAYTY 331

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +I    K G +K A   +  M + GV ++ V +NTL++ YCK+G ++ A  L + M++
Sbjct: 332 GALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQ 391

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +GFE D +T  I+  G C++   + A+  L  M + G   N+ +++ ++D   K+     
Sbjct: 392 KGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAE 451

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A  +F+ ME K       TY++ +   CK  ++  A KL+    + G+        +++D
Sbjct: 452 ARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLID 511

Query: 295 GLRHSG 300
           G R SG
Sbjct: 512 GERASG 517



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 45/314 (14%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARWI 67
           C   F + ++    NR  D++L +F   +K GF + E   +  L+  L ++G +      
Sbjct: 121 CDMLFRVYMD----NRMFDSSLEVFDYARKKGFEIDERSCFEFLL-ALKRSGNMELCVEF 175

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ DSG      ++T ++    +  +      ++  +  KG+      Y T++  +++
Sbjct: 176 LRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIE 235

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--- 184
           I  +    + +  M  + V  ++ +Y  LI  Y +  K+E A  L DEM K+G E D   
Sbjct: 236 IKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYI 295

Query: 185 --------------------------------KYTHTILIDGLCKAGNIKGARLHLEYMN 212
                                            YT+  LI+G CKAG +K A + +  M 
Sbjct: 296 YTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQ 355

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
             G D N   +N ++D   K G ID A+ +   M+ K    D+FT + +    C++ R  
Sbjct: 356 SKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRRE 415

Query: 269 SASKLLLSCLKSGV 282
            A +LLL+  + GV
Sbjct: 416 EAKRLLLTMEERGV 429



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 124/265 (46%), Gaps = 24/265 (9%)

Query: 23  NRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81
           N  T + LR F  L Q     P+L  + IL   L +A +    + +LK + + G+  + +
Sbjct: 41  NLPTRSCLRFFDFLRQNPSRKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNV 100

Query: 82  TY------------TTIMKCC---FR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
                         + + K C   FR    NR +   LE+    ++KG+  D       +
Sbjct: 101 ERIVSSIGGEFNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFL 160

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            A  + G ++   +++ QMV  G+++ + S+  +++  CK+G++  A  L+DE+  +GF+
Sbjct: 161 LALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFK 220

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
               T+  L++G  +  ++ G    L  M K   D N+  Y  +++   +  KI+ A  +
Sbjct: 221 PSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKL 280

Query: 243 FESMEVK----DSFTYSSMVHNLCK 263
           F+ M  K    D + Y+S+++  CK
Sbjct: 281 FDEMLKKGIEPDVYIYTSIINWNCK 305


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 136/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N  + G C       AL     L   GF  + V+Y  LI GLCK G  R A  +
Sbjct: 138 PDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALEL 197

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +       + + Y+TI+    +++      ++ S M  +  + +   Y  +I+ F  
Sbjct: 198 LRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCI 257

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LK+A     +M ++ +  D+ ++N L++ +CKEG+++ A   L  M KQG + D  T
Sbjct: 258 VGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVT 317

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    +  A+  L  M+  G  + + +YN +++   K   +D A+ +F+ M 
Sbjct: 318 YNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMH 377

Query: 248 VKDSF----TYSSMVHNLCKAKRLPSASKLL 274
            K  F    TY+S++  LCK+ R+  A +L+
Sbjct: 378 HKQIFPNVITYNSLIDGLCKSGRISYALELI 408



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++    T++ +++G C      +A+ +F  +      P++ T+NIL+   CK GR
Sbjct: 236 MVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGR 295

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+  L  +   G  P+ +TY ++M       +  +   IL+ M  +G T     Y  
Sbjct: 296 VKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNI 355

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F KI  + +A    ++M    +  ++++YN+LI+  CK G++  A  L+D M  +G
Sbjct: 356 VINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRG 415

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T++ ++D LCK   +  A   L  +   G   N+  Y  ++D L K G+++ A 
Sbjct: 416 QQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDAR 475

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           N+FE + VK       TY+ M+   C       A  LL
Sbjct: 476 NIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLL 513



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 135/286 (47%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   ++ P   TFNI+++  CK      A      + K G  P++VTYN L+ G C    
Sbjct: 271 MTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNE 330

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ IL  +   G      +Y  ++    + +     +++   M  K    +   Y +
Sbjct: 331 VNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNS 390

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+  A + ++ M   G Q DI++Y+++++  CK   ++ A  LL +++ QG
Sbjct: 391 LIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQG 450

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + YT+TILIDGLCK G ++ AR   E +   G++  +  Y  ++      G  D A+
Sbjct: 451 IRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEAL 510

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++   M+    + D+ TY  ++ +L        A KLL   +  G+
Sbjct: 511 SLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGL 556



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 4/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    FNI++N  C+      A  +   + K G+ P+ +T N  IKG C  G++  A 
Sbjct: 101 IKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQAL 160

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               +L   G   + ++Y T++    +  + +  LE+L  +  K    D   Y T+I + 
Sbjct: 161 NFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSM 220

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   + +A D   +MV+  +  +IV+Y+ LI+ +C  GKL+ A  L ++M  +    D 
Sbjct: 221 CKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDV 280

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  IL+D  CK G +K A+  L  M K G   ++  YN ++D      +++ A ++  +
Sbjct: 281 YTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNT 340

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M          +Y+ +++  CK K +  A KL        +        +++DGL  SG
Sbjct: 341 MSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSG 399



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 145/307 (47%), Gaps = 8/307 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +++ +CK++  ++A  ++  +        +VTY+ LI G C  G+L+ A  +  ++ 
Sbjct: 213 YSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMT 272

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                P+  T+  ++    +  + K     L+ M ++G   D   Y +++  +  +  + 
Sbjct: 273 SENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVN 332

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A   +  M   GV   + SYN +IN +CK   ++ A  L  EM  +    +  T+  LI
Sbjct: 333 MAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLI 392

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS- 251
           DGLCK+G I  A   ++ M+  G   ++  Y+ I+D L K+  +D AI +   +++KD  
Sbjct: 393 DGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALL--IKLKDQG 450

Query: 252 -----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
                +TY+ ++  LCK  RL  A  +    L  G  +  +    ++ G    G   EA 
Sbjct: 451 IRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEAL 510

Query: 307 KIQSKIR 313
            + SK++
Sbjct: 511 SLLSKMK 517



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 39/293 (13%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    F  +L  L K+++    L +F+ ++  G  P  V +NILI   C+ G +  A  
Sbjct: 67  TPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFS 126

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L ++   G+ P+ IT                                     T I  F 
Sbjct: 127 VLAKILKMGYEPDTITLN-----------------------------------TFIKGFC 151

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G++ +A ++ +++V  G  LD VSY TLIN  CK G+  AA  LL  ++ +  + D  
Sbjct: 152 LKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVV 211

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            ++ +ID +CK  N+  A      M      SN+  Y+ ++      GK+  AI +F  M
Sbjct: 212 MYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKM 271

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +    D +T++ +V   CK  R+  A   L   +K G++       +++DG
Sbjct: 272 TSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDG 324



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 107/271 (39%), Gaps = 54/271 (19%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +L+ LCKN   D A+ +   L+  G  P + TY ILI GLCK GRL  AR I
Sbjct: 418 PDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNI 477

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            ++L   G+     TYT +++    +  +   L +LS MK      D   Y  +I +   
Sbjct: 478 FEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFD 537

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNT-------------------------------- 155
                +A   + +M+T G+    + Y +                                
Sbjct: 538 KDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKL 597

Query: 156 -LINLYC---------KEGKLEAAYLLLD---EMEKQGFECDKYTHTILIDGLCKAGNIK 202
            L  +YC         ++  +E   +++    +  KQG+  D  T+T++I G C  G   
Sbjct: 598 LLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHG--- 654

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
                  +   +   S +E   CI D +  D
Sbjct: 655 ------LFDESLALLSKMEVNGCIPDAVTYD 679


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 146/293 (49%), Gaps = 4/293 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F+ +++  C+      AL     + K GF P +VT+  L+ G C   R++ A  ++ ++
Sbjct: 110 SFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQI 169

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G+ PN + Y TI+     NR+    L++L+ M++ G   D   Y ++I      G+ 
Sbjct: 170 VGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKW 229

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             +   +  M+  G+  D+++++ +I+++ KEG+L  A    DEM ++  + +  T+  L
Sbjct: 230 GVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSL 289

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I+GLC  G +  A+  L +M   GF  N   YN +V+   K  ++D A+ +   M     
Sbjct: 290 INGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGV 349

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             D+FTY+++    C+A +  +A K+L   +  GV         ++DGL   G
Sbjct: 350 DGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHG 402



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 152/345 (44%), Gaps = 39/345 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++NG C       A+ +   +   G+ P +V YN +I  LC+  ++ TA  +
Sbjct: 141 PSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDV 200

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G  P+ ITY +++   F + K+ +   ILS M R G   D   +  +I  F K
Sbjct: 201 LNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGK 260

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF------ 181
            G+L EA    ++M+   V  +IV+YN+LIN  C  G L+ A  +L+ M  +GF      
Sbjct: 261 EGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVT 320

Query: 182 -----------------------------ECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
                                        + D +T+  L  G C+AG    A   L  M 
Sbjct: 321 YNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMV 380

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLP 268
             G   ++  +N ++D L + GKI+ A+   E ++  ++     TY+ ++  +CKA ++ 
Sbjct: 381 SCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVE 440

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            A  L  S    GV         ++ GLR      EA ++  K++
Sbjct: 441 DAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKMK 485



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 132/261 (50%), Gaps = 5/261 (1%)

Query: 18  NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           +GL   ++ D AL +F  + +   +P +V ++ L+  + K  +      + + +   G +
Sbjct: 47  SGLHSIKFND-ALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGIS 105

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
            +  +++T++ C  R  +  L L  L  M + G+      + +++  F  + R++EA   
Sbjct: 106 HDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSL 165

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ++Q+V  G + ++V YNT+I+  C+  +++ A  +L+ MEK G   D  T+  LI  L  
Sbjct: 166 VDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFH 225

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
           +G    +   L  M ++G   ++  ++ ++D  GK+G++  A   ++ M  +    +  T
Sbjct: 226 SGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVT 285

Query: 254 YSSMVHNLCKAKRLPSASKLL 274
           Y+S+++ LC    L  A K+L
Sbjct: 286 YNSLINGLCIHGLLDEAKKVL 306



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 35/204 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N ++NGLC +   D A ++   +   GF P  VTYN L+ G CK+ R
Sbjct: 274 MIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKR 333

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A                                   ++IL  M   G   D F Y T
Sbjct: 334 VDDA-----------------------------------MKILCVMSHDGVDGDTFTYNT 358

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +   + + G+   A   + +MV+ GV  DI ++N L++  C+ GK+E A + L++++K  
Sbjct: 359 LYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSE 418

Query: 181 FECDKYTHTILIDGLCKAGNIKGA 204
                 T+ I+I G+CKA  ++ A
Sbjct: 419 TVVGIITYNIIIKGMCKANKVEDA 442



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   TFN++L+GLC++   + AL     LQK   V  ++TYNI+IKG+CKA ++ 
Sbjct: 382 CGVL-PDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVE 440

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
            A ++   L   G +P+ ITYTT+M    R R +    E+   MK+
Sbjct: 441 DAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKMKK 486



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N +  G C+    + A ++   +   G +P++ T+N+L+ GLC+ G++  A   L+
Sbjct: 353 TFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLE 412

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +L  S      ITY  I+K   +  K +    +  ++  KG + D   Y T++    +  
Sbjct: 413 DLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKR 472

Query: 130 RLKEATDYMEQMVTD 144
              EA +   +M  D
Sbjct: 473 LWLEAHELYRKMKKD 487


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1202

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 139/274 (50%), Gaps = 4/274 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +++G CK+   + + ++   ++     P L+T+N L+KGL KAG 
Sbjct: 613 MLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGM 672

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L E+ D G  P+A T++ +      N K    L +       G   + +    
Sbjct: 673 VEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSI 732

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A  K G++++A + + + +  G+  + V YNT+I+ Y ++G L  A + +D MEKQG
Sbjct: 733 LLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQG 792

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   +  LI   C+ G+++ A   +  M   G   ++E YN ++   G+  + D   
Sbjct: 793 MKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCF 852

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           ++ + ME    + +  +Y ++++ LCK  +L  A
Sbjct: 853 DLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEA 886



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 3/260 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P    +N M++G  +      A      ++K G  P+ + YN LI+  C+ G +  A 
Sbjct: 758  LVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAE 817

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              + ++   G +P+  TY  ++    R  ++    ++L  M+  G   +   Y T+I   
Sbjct: 818  QEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCL 877

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             K  +L EA      M   GV  ++  YN LI+  C +GK+E A+   +EM K+G E + 
Sbjct: 878  CKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNL 937

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             T+  LIDGL   G +  A   L  +++ G   ++  YN ++      G +   I ++E 
Sbjct: 938  VTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEE 997

Query: 246  ME---VKDSFTYSSMVHNLC 262
            M+   +K +     ++ +LC
Sbjct: 998  MKTSGIKPTLKTYHLLISLC 1017



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            +++LN   +++    A  +F  L+  G  P   +  +L+  L K  + R    +   + 
Sbjct: 488 LSVLLN---ESKMISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNIL 544

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +S   P+   Y   ++   +      GLE+ + MK    +   F Y  +I    K+ ++K
Sbjct: 545 ESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMK 604

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A    ++M+   +   +++YNTLI+ YCK+G  E ++ + + M+    E    T   L+
Sbjct: 605 DAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLL 664

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
            GL KAG ++ A   L  M   GF  +   ++ + D    + K D A+ V+E+       
Sbjct: 665 KGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLK 724

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +++T S +++ LCK  ++  A ++L   +  G+   +     ++DG    G
Sbjct: 725 MNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKG 776



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 4/236 (1%)

Query: 11   ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             T+N +++GL  N     A  M   + + G  P++ TYN LI G   AG ++    + +E
Sbjct: 938  VTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEE 997

Query: 71   LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            +  SG  P   TY  ++  C +    +L  +I   M  +    D   Y  V+  +   G 
Sbjct: 998  MKTSGIKPTLKTYHLLISLCTK-EGIELTKKIFGEMSLQP---DLLVYNGVLHCYAVHGD 1053

Query: 131  LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            + +A +  +QM+   + LD  +YN+LI    K GKL     L+DEM+ +  E +  T+ I
Sbjct: 1054 MDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDI 1113

Query: 191  LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            ++ G C+  +  GA +    M + G   ++   + +V  L ++ +   A NV   M
Sbjct: 1114 IVKGHCEMKDYMGAYVWYREMQEKGLLLDVCIGDELVSGLKEEWRSKEAENVISEM 1169



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALR---MFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
            L P   T+N +++G    R+  N  R   ++  ++  G  P L TY++LI  LC    + 
Sbjct: 968  LKPDVFTYNSLISGY---RFAGNVQRCIALYEEMKTSGIKPTLKTYHLLI-SLCTKEGIE 1023

Query: 63   TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
              + I    G+    P+ + Y  ++ C   +        +   M  K    D   Y ++I
Sbjct: 1024 LTKKIF---GEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLI 1080

Query: 123  AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               +K+G+L E    +++M    ++ +  +Y+ ++  +C+      AY+   EM+++G  
Sbjct: 1081 LGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGLL 1140

Query: 183  CDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
             D      L+ GL +    K A   +  MN
Sbjct: 1141 LDVCIGDELVSGLKEEWRSKEAENVISEMN 1170


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 141/293 (48%), Gaps = 6/293 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T N +LNGL K  YTD    ++  +++ G  P L T+NIL   LCK G      
Sbjct: 219 FVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVN 278

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+++ + G  P+ +TY T++    R  +      +   M R+G   D   Y  ++   
Sbjct: 279 KFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL 338

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR++EA     +MV  G+  DIV+YNTLI+ YCKEGK++ +  LL +M   G   D 
Sbjct: 339 CKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDS 398

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T  +L++G  K G    A   +  + + G   + + Y+ ++  L ++ +   A N+ E 
Sbjct: 399 FTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLER 458

Query: 246 MEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
           M  KD        Y+ ++ + C+   +  A  L +  +   ++   +  +AV+
Sbjct: 459 MS-KDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVI 510



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 139/281 (49%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFNI+ + LCK+  T    +    +++ GF P++VTYN LI   C+ GRL  A 
Sbjct: 254 IAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAF 313

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++ K +   G  P+ ++YT +M    +  + +   ++   M  +G + D   Y T+I  +
Sbjct: 314 YLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGY 373

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+++E+   +  M+ +G+  D  +   L+  Y KEGK  +A  L+ E+++ G    +
Sbjct: 374 CKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQ 433

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             ++ LI  LC+      A+  LE M+K G    LE YN ++    +   I  A+ +   
Sbjct: 434 DIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKME 493

Query: 246 M---EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M   E+K +  TY +++  L +  R      L+   + SG+
Sbjct: 494 MVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGM 534



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 141/332 (42%), Gaps = 33/332 (9%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI---LIKGLCKAGRLR 62
           L P T   N ++N +C N    N+       + +  +P L    I   L++  C++    
Sbjct: 59  LLPQTQNPNNIVNLICSNLKQHNSNLALLHTEVNALLPHLGAQEISRVLLR--CQSDSFT 116

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-------------- 108
              +      D G  P+   Y  ++     +R +   ++ L  +                
Sbjct: 117 ALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELVKDDLPSEDVFKN 176

Query: 109 -----KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
                +   +D   +  ++ A++++GR++E      +M+  G    +++ N L+N   K 
Sbjct: 177 LILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKL 236

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
              +  + + +EME+ G   + YT  IL   LCK G+       LE M + GFD ++  Y
Sbjct: 237 NYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTY 296

Query: 224 NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           N +++   + G++D A  +++ M     V D  +Y+++++ LCK  R+  A +L    + 
Sbjct: 297 NTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVH 356

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
            G+    S      + L H  C +E K  +S+
Sbjct: 357 RGL----SPDIVTYNTLIHGYC-KEGKMQESR 383



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 126/302 (41%), Gaps = 17/302 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L+P   T+N +++G CK      +  +   +  +G  P+  T  +L++G  K G+
Sbjct: 354 MVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGK 413

Query: 61  LRTARWILKELGDSGHAPNAITYT-TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
             +A  ++ EL   G + +   Y+  I+  C  NR +     +L  M + G+  +   Y 
Sbjct: 414 FLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFA-AKNLLERMSKDGHKPELEIYN 472

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I +F +   + EA     +MV   ++ ++ +Y  +I    +  +      L+ EM   
Sbjct: 473 ELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVAS 532

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D      L  G C+  +I  A   L +  K     + E++N ++      G I   
Sbjct: 533 GMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIAR- 591

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-LKSAQKAVVDGLRH 298
                S+E++D      ++ N               + L S +R+ +K+A  A+ DG+  
Sbjct: 592 -----SLEIQDMMLKMGLLPNPLTCNP--------FAILTSRLRVDVKAANMAIFDGMNA 638

Query: 299 SG 300
           S 
Sbjct: 639 SS 640


>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g38730-like [Brachypodium distachyon]
          Length = 599

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 137/308 (44%), Gaps = 39/308 (12%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A R+F  ++  G  P+      L+  L +A    TA  +  E+G +G A N   Y  ++
Sbjct: 129 DAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKVFNEMGRAGVAMNTHVYNAML 188

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
             C + R       +++ M   G   D F + TVIA +V+ G   EA    E+M  +GV+
Sbjct: 189 HVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERMQDEGVE 248

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            DIV++NT+I+  CKEG+++ A  L  +M     E D  T+T L+DG C+ G++  A   
Sbjct: 249 PDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEAVKL 308

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKI-----------------DHA-----INVF-- 243
            E M   G    +  YN I+ +L +DGK+                 DH      IN +  
Sbjct: 309 REEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADHVTCNTLINSYAK 368

Query: 244 ---------------ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
                          ES    D FTY +++H  CKAK L  A + L   +  G     S 
Sbjct: 369 RGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRGFSPNYSV 428

Query: 289 QKAVVDGL 296
              +VDG 
Sbjct: 429 FSWLVDGF 436



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++GLCK      A ++   +      P+ VTY  L+ G C+ G +  A 
Sbjct: 247 VEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEAV 306

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+   G  P   TY  I++    + K K    +LS M  +    D     T+I ++
Sbjct: 307 KLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADHVTCNTLINSY 366

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +  A    ++M+  G+QLD  +Y  LI+ +CK  +L+ A   L EM  +GF  + 
Sbjct: 367 AKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRGFSPNY 426

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              + L+DG CK  N     L  + + K G   +   Y  ++ RL K G +D A  V   
Sbjct: 427 SVFSWLVDGFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQ 486

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           M+ K    D   Y+++ +    A ++ +AS +L
Sbjct: 487 MQGKGLEVDCLVYATLAYAHLTAGKVAAASDIL 519



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 118/262 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P T T+  +++G C+      A+++   ++  G VP + TYN +I+ LC+ G+
Sbjct: 277 MIAAAVEPDTVTYTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGK 336

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++    +L E+       + +T  T++    +        ++   M   G   D F Y  
Sbjct: 337 MKEVNGLLSEMDGRKVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKA 396

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K   L EA + + +M+  G   +   ++ L++ +CK+   +A  L+ DE+ K+G
Sbjct: 397 LIHGFCKAKELDEAKEALFEMMGRGFSPNYSVFSWLVDGFCKKNNTDAVLLIPDELIKRG 456

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              DK  +  LI  LCK G +  A+  L  M   G + +   Y  +       GK+  A 
Sbjct: 457 LPPDKSVYRSLIRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYATLAYAHLTAGKVAAAS 516

Query: 241 NVFESMEVKDSFTYSSMVHNLC 262
           ++   M  K       + + LC
Sbjct: 517 DILNEMARKQMSVTPQIYNCLC 538



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 4/236 (1%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P + ++ +L      + R   A  +  ++   G AP+A   T ++    R R      ++
Sbjct: 109 PHVPSWLLLALSHSHSARPHDAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKV 168

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
            + M R G   +   Y  ++   +K      A   M +M   GV LD  S+NT+I LY +
Sbjct: 169 FNEMGRAGVAMNTHVYNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVR 228

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           +G    A  + + M+ +G E D  T   +I GLCK G +K A      M     + +   
Sbjct: 229 KGMQYEAMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVT 288

Query: 223 YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           Y  +VD   + G +  A+ + E ME    V    TY++++  LC+  ++   + LL
Sbjct: 289 YTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLL 344



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 64/152 (42%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++G CK +  D A      +   GF P    ++ L+ G CK         I  EL
Sbjct: 393 TYKALIHGFCKAKELDEAKEALFEMMGRGFSPNYSVFSWLVDGFCKKNNTDAVLLIPDEL 452

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+   Y ++++   +     L  ++L  M+ KG   D   Y T+  A +  G++
Sbjct: 453 IKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYATLAYAHLTAGKV 512

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
             A+D + +M    + +    YN L   Y  E
Sbjct: 513 AAASDILNEMARKQMSVTPQIYNCLCTSYGDE 544



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 4/188 (2%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
            R  +A    +QM   G+  D  +   L+    +      A+ + +EM + G   + + +
Sbjct: 125 ARPHDAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKVFNEMGRAGVAMNTHVY 184

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             ++    KA +   A   +  M+  G   +  ++N ++    + G    A+ V E M+ 
Sbjct: 185 NAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERMQD 244

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                D  T+++++H LCK  R+  A++L    + + V         +VDG    G   E
Sbjct: 245 EGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDVGE 304

Query: 305 AKKIQSKI 312
           A K++ ++
Sbjct: 305 AVKLREEM 312


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 145/308 (47%), Gaps = 5/308 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T TFNI++ GLC+    D A  +F+ ++  G +P++VTYN LI GLCKA  ++    
Sbjct: 175 PPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCE 234

Query: 67  ILKELGD-SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           + KE+   S  +P+ +TYT+I+    ++ K K    +   M R G   +   +  +I  F
Sbjct: 235 LFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGF 294

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            KIG + EA     +M       D+V++ +LI+ YC+ G++       + M+ +      
Sbjct: 295 GKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTV 354

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+ +LI+ LCK   +  AR  L  +           YN ++D   K G +D    + + 
Sbjct: 355 YTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKE 414

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME K    D  T++ ++   C   R+  A  +    L +          +++  L  +G 
Sbjct: 415 MEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGM 474

Query: 302 RREAKKIQ 309
             EA +I+
Sbjct: 475 PNEAYRIR 482



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 101/196 (51%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            D +P   T+  +++G CK+     A  +F  + + G  P ++T+N+LI G  K G +  
Sbjct: 243 SDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAE 302

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + +++     + + +T+T+++    R  +   GL+  + MK +  +   + Y  +I 
Sbjct: 303 AEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLIN 362

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  K  RL EA D++ Q+    +      YN +I+ +CK G ++   ++L EME++  + 
Sbjct: 363 ALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDP 422

Query: 184 DKYTHTILIDGLCKAG 199
           DK T TILI G C  G
Sbjct: 423 DKVTFTILIIGHCVKG 438



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 142/340 (41%), Gaps = 40/340 (11%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE------LVT--------------- 47
           C +T+N+++  LC+  + D    +F  +   G +P+      LVT               
Sbjct: 72  CYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLL 131

Query: 48  --------------YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93
                         YN L+  L K  ++  A ++ KE       P+  T+  +++   R 
Sbjct: 132 AEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRV 191

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVS 152
                  E+   M+  G   D   Y T+I    K   ++   +  +++ +      DIV+
Sbjct: 192 GGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVT 251

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           Y ++I+ +CK GK++ A  L +EM + G + +  T  +LIDG  K GNI  A      M 
Sbjct: 252 YTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMA 311

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLP 268
                +++  +  ++D   + G+++H +  +  M+ ++     +TY+ +++ LCK  RL 
Sbjct: 312 YFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLN 371

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            A   L     S +         V+DG   +G   E   I
Sbjct: 372 EARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVI 411



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 40/271 (14%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           TYN+L++ LC+ G       +   +G  GH P++     ++    +   + +  ++L+ +
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEV 134

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           + K                                    V+++   YN L+++  K+ ++
Sbjct: 135 QGKE-----------------------------------VRINSFVYNNLLSVLVKQNQV 159

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
             A  L  E        D +T  ILI GLC+ G +  A    + M   G   ++  YN +
Sbjct: 160 HEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTL 219

Query: 227 VDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ++ L K  ++     +F+ ++ +     D  TY+S++   CK+ ++  AS L    ++SG
Sbjct: 220 INGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSG 279

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           ++        ++DG    G   EA+ +  K+
Sbjct: 280 IQPNVITFNVLIDGFGKIGNIAEAEAMYRKM 310



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++G CK    D    + + +++    P+ VT+ ILI G C  GR+  A 
Sbjct: 385 IIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAI 444

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFR----NRKYKL 98
            I   +  +  AP+ IT  +++ C  +    N  Y++
Sbjct: 445 NIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRI 481


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 4/304 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   + N ++N L ++   D A+ ++R L++ G  P   TY I IK LC+ G    A 
Sbjct: 188 FVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAV 247

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ ++G  PNA+T +T ++    +++  LG E L A++   +  D F Y  VI  F
Sbjct: 248 DVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGF 307

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               +LKEA D    MV +G+  D   Y  LI+ YCK G L  A  L ++M   G + + 
Sbjct: 308 CSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNC 367

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
              + ++  LC+ G         +     G   +   YN +VD L K GK++ A+ +   
Sbjct: 368 VIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNE 427

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+ +    D   Y++++   C   +L  A  +     + G+         +V G   +G 
Sbjct: 428 MKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGL 487

Query: 302 RREA 305
           ++EA
Sbjct: 488 KKEA 491



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 128/279 (45%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +  ++ G C       A  +F  +   G  P+   Y  LI   CKAG L  A  +  
Sbjct: 297 TFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHN 356

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++  +G   N +  ++I++C          ++     +  G   D   Y  V+ A  K+G
Sbjct: 357 DMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLG 416

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +++EA + + +M    + LD+V Y TLI  YC +GKL  A  + +EM+++G E D  T+ 
Sbjct: 417 KVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYN 476

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           IL+ G  + G  K A   L+ +   G   N   +N I++ L   GK+  A     ++E K
Sbjct: 477 ILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDK 536

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288
               YS+MV   CKA     A +L     K G+ + K +
Sbjct: 537 CLENYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKS 575



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 15/217 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P    +  ++   C++     A  +F  L + G  P+++TY ++I G C+   
Sbjct: 599 MLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNC 658

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC-------CFRNRKYKLGLE--------ILSA 105
           LR AR I  ++ + G  P+ ITYT ++           R+ ++  G E          S 
Sbjct: 659 LREARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSE 718

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           MK  G   D   Y  +I +  K   L++A +  ++M+  G+Q DIV+Y  L++  C  G 
Sbjct: 719 MKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGD 778

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
           ++ A  L++EM  +G E D    ++L  G+ KA  ++
Sbjct: 779 MDRAITLVNEMSFKGIEPDSRAMSVLHRGILKARKVQ 815



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 8/287 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+++ LCK    + A+ +   ++      ++V Y  LI G C  G+L  A+ + +E+ 
Sbjct: 405 YNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMK 464

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G  P+ +TY  ++    RN   K  LE+L  +  +G   +   +  +I      G++K
Sbjct: 465 ERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVK 524

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA  ++  +    ++    +Y+ +++ YCK      AY L   + KQG    K +   L+
Sbjct: 525 EAEAFLNTLEDKCLE----NYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLL 580

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
             LC  G    A + LE M  +  + N   Y  ++    +DG +  A  VF+ +      
Sbjct: 581 SSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGIT 640

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            D  TY+ M++  C+   L  A  +     + G++        V+DG
Sbjct: 641 PDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDG 687



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 21/279 (7%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           C   ++ M++G CK  +T  A  +F  L K G + +  +   L+  LC  G    A  +L
Sbjct: 537 CLENYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILL 596

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           + +      PN I Y  ++    R+   K    +   +  +G T D   Y  +I  + ++
Sbjct: 597 ERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRV 656

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----------------EGKLEAAYLL 172
             L+EA D    M   G++ D+++Y  +++ + K                E K++A+   
Sbjct: 657 NCLREARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDAS-PF 715

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
             EM++ G + D   +T+LID  CK  N++ A    + M   G   ++  Y  ++     
Sbjct: 716 WSEMKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCS 775

Query: 233 DGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
            G +D AI +   M  K    DS   S +   + KA+++
Sbjct: 776 RGDMDRAITLVNEMSFKGIEPDSRAMSVLHRGILKARKV 814



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 115/278 (41%), Gaps = 17/278 (6%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A   F  L++ GF   + TY  LI+ LC+    R  + +L E+  S  +      T +  
Sbjct: 80  AWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFD 139

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R    ++  E  S +       D      ++ A+V++G   EA D + Q    G   
Sbjct: 140 V-LREGGGEVEGEHSSVLI---LVLD-----MLVKAYVRVGMFDEAIDALFQTKRRGFVP 190

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
            I+S N L+N   + GK++ A  +   +++ G   + YT+ I I  LC+ GN + A    
Sbjct: 191 HIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVF 250

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M + G + N    +  ++ L    + D       ++       D+F Y++++   C  
Sbjct: 251 REMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSE 310

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            +L  A  + +  +  G+    +    +   L H+ C+
Sbjct: 311 MKLKEAEDVFIDMVNEGI----APDGYIYGALIHAYCK 344


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 142/295 (48%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +++G C     + A      + + G +P + TYN+LI  L    ++  A 
Sbjct: 292 LRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEAD 351

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I+KE+ + G  P+++TY  ++    R    K    +   M  KG       Y ++I   
Sbjct: 352 GIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVL 411

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+K+A D  E++V  G+  D++ +N LI+ +C  G ++ A+ +L EM++     D+
Sbjct: 412 SKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDE 471

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L+ G C+ G ++ AR  +E M   G   +  +YN ++    K G +  A  V + 
Sbjct: 472 VTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDE 531

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M          TY++++  LCK +    A +LL   +  G+    +   ++++G+
Sbjct: 532 MLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 154/311 (49%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++G C     + A  +F  ++  G  P+  TY   I G+CK G+L  A 
Sbjct: 222 IKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEAS 281

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+++ + G  P A+TY T++         ++  +    M R+G       Y  +I A 
Sbjct: 282 GMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHAL 341

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               ++ EA   +++M   G+  D V+YN LIN YC+ G ++ A+ L DEM  +G +  +
Sbjct: 342 FLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTR 401

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T LI  L K G +K A    E + + G   +L  +N ++D    +G +D A  + + 
Sbjct: 402 VTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKE 461

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+    V D  T+++++   C+  ++ +A +L+      G++    +   ++ G    G 
Sbjct: 462 MDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGD 521

Query: 302 RREAKKIQSKI 312
            ++A +++ ++
Sbjct: 522 MKDAFRVRDEM 532



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 138/265 (52%), Gaps = 4/265 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P  +T+N++++ L  +   D A  + + + + G VP+ VTYNILI G C+ G 
Sbjct: 322 MVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGN 381

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  +  E+   G  P  +TYT+++    +  + K   ++   + RKG   D   +  
Sbjct: 382 VKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNA 441

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G +  A   +++M    V  D V++NTL+   C+EGK+EAA  L++EM+ +G
Sbjct: 442 LIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRG 501

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  ++  LI G  K G++K A    + M  IGF+  L  YN ++  L K+ + DHA 
Sbjct: 502 IKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAE 561

Query: 241 NVFESMEVK----DSFTYSSMVHNL 261
            + + M  K    +  TY S++  +
Sbjct: 562 QLLKEMISKGITPNDNTYLSLIEGI 586



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 39/311 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P     N ML+   K+  T+ A  ++  + +      +VT+NI+I  LCK G+L+ A+
Sbjct: 152 VIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAK 211

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +  +   G  PN +TY TI+                             GYC+     
Sbjct: 212 EFIGLMEALGIKPNVVTYNTIIH----------------------------GYCSR---- 239

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR++ A    + M   GV+ D  +Y + I+  CKEGKLE A  +L++M++ G     
Sbjct: 240 ---GRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTA 296

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDG C  GN++ A  + + M + G    +  YN ++  L  D K+D A  + + 
Sbjct: 297 VTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKE 356

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V DS TY+ +++  C+   +  A  L    +  G++  +    +++  L   G 
Sbjct: 357 MSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGR 416

Query: 302 RREAKKIQSKI 312
            ++A  +  KI
Sbjct: 417 MKQADDLFEKI 427



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 108/226 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P + T+NI++NG C+      A  +   +   G  P  VTY  LI  L K GR++ A 
Sbjct: 362 LVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQAD 421

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++   G  P+ I +  ++     N        +L  M +     D   + T++   
Sbjct: 422 DLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGR 481

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+++ A + +E+M + G++ D +SYNTLI+ Y K G ++ A+ + DEM   GF    
Sbjct: 482 CREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTL 541

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
            T+  LI GLCK      A   L+ M   G   N   Y  +++ +G
Sbjct: 542 LTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIG 587



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V Y+ LI   C+  + + A+   D M+ +G     +    ++    K+   + A +    
Sbjct: 122 VLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAE 181

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHA---INVFESMEVKDSF-TYSSMVHNLCKAKR 266
           M ++   S++  +N +++ L K+GK+  A   I + E++ +K +  TY++++H  C   R
Sbjct: 182 MFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGR 241

Query: 267 LPSASKLLLSCLK-SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           +  A +++   +K  GV+       + + G+   G   EA  +  K++
Sbjct: 242 VEGA-RMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMK 288


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 139/295 (47%), Gaps = 4/295 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P   T+  ++ G C+NR  D A  +F  + K G  P  VTY+ LI GLC  GR+  A
Sbjct: 227 DLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEA 286

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+E+ + G  P   TYT  +       +    + ++ +M +KG +     Y  +I+ 
Sbjct: 287 MDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISG 346

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             + G+++ A     +M+ +G+  + V+YN LIN  C EG+   A  + D ME  G   +
Sbjct: 347 LFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLAN 406

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF- 243
             T+  +I GL    +I+ A +    M K G    +  YN ++    K G +++A     
Sbjct: 407 AQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLY 466

Query: 244 ---ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
              ES    D  TY  ++   CK  +L SA+      LK G+   +    A++DG
Sbjct: 467 MMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDG 521



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 144/311 (46%), Gaps = 8/311 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+ + ++ LC     D+A+ + R + K G  P + TY  +I GL +AG++  A 
Sbjct: 298 IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAI 357

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G  PN +TY  ++       ++ + L+I   M+  G   +   Y  +I   
Sbjct: 358 GMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGL 417

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +  +++A     +M+ DG    +V+YNTLI    K G L  A   L  M++   E D+
Sbjct: 418 FGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDE 477

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI G CK G +  A      M K G   N   Y  ++D   K+GKID A+++FE 
Sbjct: 478 RTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFER 537

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME         TY++++  L K  R   A K      + G++       ++++GL    C
Sbjct: 538 MEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGL----C 593

Query: 302 RREAKKIQSKI 312
           +  A  +  KI
Sbjct: 594 KNTATNLAFKI 604



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 129/304 (42%), Gaps = 35/304 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+N ++N LC       AL++F  ++ HG +    TYN +IKGL     +  A 
Sbjct: 368 LVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAM 427

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++   G +P  +TY T++    +          L  MK      D   YC +I+ F
Sbjct: 428 VVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGF 487

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L  AT +  +M+  G+  +  +Y  +I+ YCKEGK++ A  L + ME+ G     
Sbjct: 488 CKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASI 547

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I GL K      A      M + G   N   Y  +++ L K+   + A  +F  
Sbjct: 548 ETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHE 607

Query: 246 MEVKDSF-----------------------------------TYSSMVHNLCKAKRLPSA 270
           ME K+                                     TYS++V  LC+  R   A
Sbjct: 608 MEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEA 667

Query: 271 SKLL 274
           S+L+
Sbjct: 668 SQLV 671



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 133/274 (48%), Gaps = 4/274 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FN +L  L K     +A  ++  +   G  P L+T+N +I  LCK G+++ A  +  ++
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P+A TYT+++    RNRK     E+   M + G   +   Y T+I      GR+
Sbjct: 224 FQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRI 283

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA D +E+M   G++  + +Y   I+  C  G+++ A  L+  M K+G      T+T +
Sbjct: 284 GEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAI 343

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I GL +AG ++ A      M K G   N   YN +++ L  +G+   A+ +F+ ME    
Sbjct: 344 ISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGT 403

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           + ++ TY+ ++  L     +  A  +    LK G
Sbjct: 404 LANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDG 437



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 4/243 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N ++    K  Y +NA R    +++    P+  TY  LI G CK G+L +A  
Sbjct: 439 SPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATS 498

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
              E+   G +PN  TYT ++    +  K  + L +   M+  G +     Y  +I+   
Sbjct: 499 FFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLS 558

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K  R  EA  +  +M   G+Q + ++Y +LIN  CK      A+ +  EMEK+    + +
Sbjct: 559 KGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAH 618

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T LI GLC+ G +  A    E + + G +  ++ Y+ +V  L ++G+ + A  + E+M
Sbjct: 619 TYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENM 674

Query: 247 EVK 249
           + K
Sbjct: 675 KEK 677



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 5/244 (2%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG ++P   T+  M++G CK    D AL +F  ++++G    + TYN +I GL K  R  
Sbjct: 506 CG-ISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFS 564

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A     ++ + G  PN ITYT+++    +N    L  +I   M++K    +   Y ++I
Sbjct: 565 EAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLI 624

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               + G++    D  E++  +G +  I +Y+TL++  C+EG+   A  L++ M+++G  
Sbjct: 625 YGLCQEGKV----DAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLS 680

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
                +  L+   CK+  +  A      M   GF  +L  Y  ++  L    + + A+N+
Sbjct: 681 PSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNI 740

Query: 243 FESM 246
           F+S+
Sbjct: 741 FQSL 744



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 4/230 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+  ++NGLCKN  T+ A ++F  ++K   +P   TY  LI GLC+ G++  A 
Sbjct: 578 LQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA- 636

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              + L ++G  P   TY+T++    R  +     +++  MK KG +     YC+++ A 
Sbjct: 637 ---ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAH 693

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++  A +    M   G Q  +  Y  LI   C   + E A  +   + K+ +  D 
Sbjct: 694 CKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDL 753

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
              T+L+DGL + G+       L  M       +L  Y  +   L K GK
Sbjct: 754 IVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGK 803



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 99/194 (51%), Gaps = 4/194 (2%)

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           + F  + + T++    K   +  A +   Q+ + GV+  ++++NT+IN+ CK+GK++ A 
Sbjct: 158 FGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAV 217

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
           L+ +++ +     D +T+T LI G C+   +  A    + M K G + N   Y+ +++ L
Sbjct: 218 LVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGL 277

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
             +G+I  A+++ E M  K      +TY+  + +LC   R+  A  L+ S  K G     
Sbjct: 278 CNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSV 337

Query: 287 SAQKAVVDGLRHSG 300
               A++ GL  +G
Sbjct: 338 QTYTAIISGLFRAG 351



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSA 270
           G   +L  +N +++ L K GK+  A+ VF  +       D+FTY+S++   C+ ++L  A
Sbjct: 192 GVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKA 251

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            ++    +K G          +++GL + G   EA
Sbjct: 252 FEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEA 286


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 157/342 (45%), Gaps = 39/342 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++ LCKN     A +MF  + K G  PE+ TY  L++G    G L    
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G  PN   ++ ++    +  K    + + S M+++G   D   Y TVI   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 126 VKIGRLKEATDYMEQMVTD-----------------------------------GVQLDI 150
            K GR+++A  Y EQM+ +                                   G+ LD 
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           + +N++I+ +CKEG++  +  L D M + G + D  T++ LIDG C AG +  A   L  
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M  +G   +   YN +++   K  +++ A+ +F  ME      D  TY+ ++  L + +R
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             +A +L +   +SG ++  S    ++ GL  +    EA ++
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 147/302 (48%), Gaps = 42/302 (13%)

Query: 13  FNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK-- 69
           F  +L GLC ++ T +A+ +  R + + G +P + +YNIL+KGLC   R + A  +L+  
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 70  -----------------------------------ELGDSGHAPNAITYTTIMKCCFRNR 94
                                              E+ D G  PN +TY++I+    + +
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQ 248

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
                +E+L++M + G   +   Y +++  +   G+ KEA  ++++M +DGV+ D+V+YN
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +L++  CK G+   A  + D M K+G + +  T+  L+ G    G +      L+ M + 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           G   N   ++ ++    K GK+D A+ VF  M  +    D+ TY +++  LCK+ R+  A
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 271 SK 272
            +
Sbjct: 429 MR 430



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 4/283 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   ++  ++NG  K    D A   +  +   G +P +VTY+ +I  LCKA  +  
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  PN  TY +I+     + + K  +  L  M   G   D   Y +++ 
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMD 312

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ +I +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + Y  +ILI    K G +  A L    M + G + +   Y  ++  L K G+++ A+  F
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           E M        +  Y+S++H+LC   +   A +L+L  L  G+
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 149/307 (48%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ ++  LCK +  D A+ +   + K+G +P   TYN ++ G C +G+ + A 
Sbjct: 230 ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAI 289

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     ++  +M ++G   +   Y T++  +
Sbjct: 290 GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ LI  Y K+GK++ A L+  +M +QG   D 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G ++ A  + E M           YN ++  L    K D A  +   
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILE 469

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D+  ++S++ + CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 302 RREAKKI 308
             EA K+
Sbjct: 530 MDEATKL 536



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    D A+ +F  +++ G  P+ VTY  +I  LCK+GR
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D   +P  I Y +++       K+    E++  M  +G   D   + +
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ DI++Y+TLI+ YC  GK++ A  LL  M   G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D  T+  LI+G CK   ++ A +    M   G   ++  YN I+  L +  +   A 
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + ES    +  TY+ ++H LCK      A ++  +   + +++       ++  L
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 665 LKVGRNDEAKDL 676



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 5/246 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ I++   C     D        + K GF  + + +  L+KGLC   R   A
Sbjct: 86  EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145

Query: 65  -RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCT 120
              +L+ +   G  PN  +Y  ++K  C  NR  +  LE+L  M   G     D   Y T
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE-ALELLQMMPDDGGDCPPDVVSYTT 204

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K G L +A     +M+  G+  ++V+Y+++I   CK   ++ A  +L  M K G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  ++ G C +G  K A   L+ M+  G + ++  YN ++D L K+G+   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 241 NVFESM 246
            +F+SM
Sbjct: 325 KMFDSM 330



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 7/249 (2%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
            P L TY ILI   C AGRL      L  +   G   +AI +T ++K    +++    ++
Sbjct: 88  TPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMD 147

Query: 102 I-LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLIN 158
           I L  M + G   + F Y  ++       R +EA + ++ M  DG     D+VSY T+IN
Sbjct: 148 IVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            + KEG L+ AY    EM  +G   +  T++ +I  LCKA  +  A   L  M K G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           N   YN IV      G+   AI   + M       D  TY+S++  LCK  R   A K+ 
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 275 LSCLKSGVR 283
            S  K G++
Sbjct: 328 DSMTKRGLK 336



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G C     D A ++   +   G  P+ VTYN LI G CK  R+  A  +
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+  SG +P+ ITY  I++  F+ R+     E+   +   G   +   Y  ++    K
Sbjct: 572 FREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    + +    +QL+  ++N +I    K G+ + A  L   +   G   D  T
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRT 691

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           ++++ + L + G ++        M + G  +N    N IV +L + G I  A
Sbjct: 692 YSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 43/258 (16%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +++  CK      + ++F  + + G  P+++TY+ LI G C AG++  A  +L 
Sbjct: 479 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLA 538

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+ +TY T++                             GYC       KI 
Sbjct: 539 SMVSVGMKPDCVTYNTLIN----------------------------GYC-------KIS 563

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A     +M + GV  DI++YN ++    +  +  AA  L   + + G + +  T+ 
Sbjct: 564 RMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE--AYNCIVDRLGKDGKIDHAINVFESME 247
           I++ GLCK  N+    L + + N    D  LE   +N ++  L K G+ D A ++F ++ 
Sbjct: 624 IILHGLCK-NNLTDEALRM-FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681

Query: 248 ----VKDSFTYSSMVHNL 261
               V D  TYS M  NL
Sbjct: 682 ANGLVPDVRTYSLMAENL 699



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 2/222 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NG CK    ++AL +FR ++  G  P+++TYNI+++GL +  R
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +   + +SG      TY  I+    +N      L +   +       +   +  
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A +K+GR  EA D    +  +G+  D+ +Y+ +     ++G LE    L   ME+ G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
              +      ++  L + G+I  A  +L  +++  F  +LEA
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHF--SLEA 759



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 97/248 (39%), Gaps = 44/248 (17%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY--MEQMVTDGVQLDIVSYNTLINL 159
           +   + R+G     +G    +A   +       + Y  M +   D V  ++ +Y  LI  
Sbjct: 41  VFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGILIGS 100

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDS 218
            C  G+L+  +  L  + K+GF  D    T L+ GLC       A  + L  M ++G   
Sbjct: 101 CCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIP 160

Query: 219 NLEAYN-------------------------------------CIVDRLGKDGKIDHAIN 241
           N+ +YN                                      +++   K+G +D A  
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
            +  M     + +  TYSS++  LCKA+ +  A ++L S +K+GV        ++V G  
Sbjct: 221 TYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 298 HSGCRREA 305
            SG  +EA
Sbjct: 281 SSGQPKEA 288


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 137/278 (49%), Gaps = 4/278 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P    +  +++G CK    + A  +F  + K G V    TY +LI GL K G  +   
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGF 253

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++ + G  PN  TY  +M    ++ + K   ++   M+ +G + +   Y T+I   
Sbjct: 254 EMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGL 313

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  +  EA + M+QM +DG+  ++++YNTLI+ +C   KL  A  L  +++ +G     
Sbjct: 314 CREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSL 373

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ IL+ G CK G+  GA   ++ M + G   +   Y  ++D   +   ++ AI +  S
Sbjct: 374 VTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSS 433

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           ME      D  TYS ++H  C   R+  AS+L  S ++
Sbjct: 434 MEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVE 471



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 133/256 (51%), Gaps = 4/256 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ ++++GL KN        M+  +Q+HG  P L TYN ++  LCK GR + A  +  E+
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G + N +TY T++    R  K     E++  MK  G   +   Y T+I  F  + +L
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKL 354

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A      + + G+   +V+YN L++ +CK+G    A  ++ EME++G +  K T+TIL
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTIL 414

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           ID   ++ N++ A      M ++G   ++  Y+ ++      G+++ A  +F+SM  K  
Sbjct: 415 IDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKF 474

Query: 250 --DSFTYSSMVHNLCK 263
             +   Y++MV   CK
Sbjct: 475 EPNEVIYNTMVLGYCK 490



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 137/279 (49%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++N LCK+  T +A ++F  +++ G    +VTYN LI GLC+  +   A  +
Sbjct: 266 PNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEV 325

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  PN ITY T++      RK    L +   +K +G +     Y  +++ F K
Sbjct: 326 MDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCK 385

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A   +++M   G++   V+Y  LI+ + +   +E A  L   ME+ G   D +T
Sbjct: 386 KGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHT 445

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +++LI G C  G +  A    + M +  F+ N   YN +V    K+G    A+ +F  ME
Sbjct: 446 YSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREME 505

Query: 248 VKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            K+      +Y  M+  LCK ++   A  L+   + SG+
Sbjct: 506 EKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGI 544



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 4/234 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++G C  R    AL + R L+  G  P LVTYNIL+ G CK G    A 
Sbjct: 334 INPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAG 393

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++KE+ + G  P+ +TYT ++    R+   +  +++ S+M+  G T D   Y  +I  F
Sbjct: 394 KVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGF 453

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR+ EA+   + MV    + + V YNT++  YCKEG    A  L  EME++    + 
Sbjct: 454 CIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNV 513

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            ++  +I+ LCK    K A   +E M     DS +   + I++ + +     H+
Sbjct: 514 ASYRYMIEVLCKERKSKEAEGLVEKM----IDSGIGPSDSILNLISRAKNDSHS 563



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 151/317 (47%), Gaps = 5/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P +  FN +L  +  +  + N    F    K   V ++ ++ I+IKG C+AG 
Sbjct: 120 MVDKGFVPGSNCFNNLLTFVVGSS-SFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGE 178

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +  +L EL + G +PN + YTT++  C +  + +   ++   M + G   + + Y  
Sbjct: 179 IEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTV 238

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G  K+  +  E+M   GV  ++ +YN ++N  CK+G+ + A+ + DEM ++G
Sbjct: 239 LIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERG 298

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             C+  T+  LI GLC+      A   ++ M   G + NL  YN ++D      K+  A+
Sbjct: 299 VSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKAL 358

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++   ++ +       TY+ +V   CK      A K++    + G++  K     ++D  
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTF 418

Query: 297 RHSGCRREAKKIQSKIR 313
             S    +A +++S + 
Sbjct: 419 ARSDNMEKAIQLRSSME 435


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 151/311 (48%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T  + I++NG C+N     AL+M   + + G V ++VTYN L+ GLC+   L  A 
Sbjct: 395 LVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDAD 454

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+ + G  P+  T TT++    ++      L +   M  +    D   Y T++  F
Sbjct: 455 ELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGF 514

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +++A +    M++  +    +S++ LIN +C  G +  A+ L DEM+++G +   
Sbjct: 515 CKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTL 574

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   +I G  +AGN+  A   L  M   G   +   YN +++   K+   D A  +  +
Sbjct: 575 VTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINN 634

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ME    + +  TY++++    +  R+  A  +L   +  G+   KS   ++++G      
Sbjct: 635 MEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDN 694

Query: 302 RREAKKIQSKI 312
            +EA ++  ++
Sbjct: 695 MKEAFRVHDEM 705



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 136/299 (45%), Gaps = 4/299 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NGLCK    + A R+   +   G  P   T+N ++   C+   +  A 
Sbjct: 290 LKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAE 349

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P+ I++++I+    RN +    L     MK  G   D   Y  +I  +
Sbjct: 350 RVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGY 409

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +   +  A     +MV  G  +D+V+YNTL+N  C+   L+ A  L  EM ++G   D 
Sbjct: 410 CRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDF 469

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT T LI G CK GN+  A    E M       ++  YN ++D   K G+++ A  ++  
Sbjct: 470 YTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYD 529

Query: 246 MEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           M  ++ F    ++S +++  C    +  A +L     + G++        ++ G   +G
Sbjct: 530 MISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAG 588



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 96/184 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   +F+I++NG C       A R++  +++ G  P LVT N +IKG  +AG 
Sbjct: 530 MISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGN 589

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A   L  +   G  P+ ITY T++    +   +     +++ M+ +G   +   Y  
Sbjct: 590 LSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNA 649

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F + GR++EA   + +M+  G+  D  +Y +LIN Y  +  ++ A+ + DEM ++G
Sbjct: 650 ILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRG 709

Query: 181 FECD 184
           F  D
Sbjct: 710 FVPD 713



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 2/217 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P   T+N +++G CK    + A  ++  +      P  ++++ILI G C  G 
Sbjct: 495 MTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGL 554

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ + G  P  +T  TI+K   R        + L+ M  +G   D   Y T
Sbjct: 555 VSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNT 614

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +FVK      A   +  M   G+  ++V+YN ++  + + G+++ A ++L +M  +G
Sbjct: 615 LINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKG 674

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGF 216
              DK T+T LI+G     N+K A R+H E + + GF
Sbjct: 675 INPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQR-GF 710



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 143/334 (42%), Gaps = 39/334 (11%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L  + K  + D A +++    K G +  + T NI++  LCK G+L      L E+ +
Sbjct: 193 NALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEE 252

Query: 74  SGHAPNAITYTTIMKC---------------CFRNRKYKLGLEILSAM----------KR 108
            G   + +TY T++                 C   +  K GL   +A+          +R
Sbjct: 253 KGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYER 312

Query: 109 KGYTFD---GFGYCTVIAAFVKI-------GRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
                D   G G C   A F  +         + EA     +M+  GV  D++S+++++ 
Sbjct: 313 AKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVG 372

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           ++ + G+L  A    ++M+  G   D   +TILI+G C+  ++ GA      M + G   
Sbjct: 373 VFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVM 432

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++  YN +++ L +   +D A  +F+ M       D +T ++++H  CK   +  A  L 
Sbjct: 433 DVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLF 492

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +     ++        ++DG    G   +AK++
Sbjct: 493 ETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKEL 526



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 4/268 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
              F++++    + R        F+ L+K GF   +   N L+  + K G +  A  + +
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           +   SG+  N  T   ++    ++ K       LS M+ KG   D   Y T++ A+ + G
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            + EA   ++ M   G++  + +YN LIN  CKEG  E A  +LDEM   G   +  T  
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFN 333

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            ++   C+  ++  A      M + G   +L +++ IV    ++G++  A+  FE M+  
Sbjct: 334 PMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGV 393

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKL 273
             V D+  Y+ +++  C+   +  A K+
Sbjct: 394 GLVPDTVIYTILINGYCRNDDVSGALKM 421



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            + +  +++   + RK + G E    ++++G+         ++ A VK+G +  A    E
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
             V  G  +++ + N ++N  CK+GKL+   + L EME++G   D  T+  L++  C+ G
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYS 255
            +  A   ++ M   G    L  YN +++ L K+G  + A  V + M       ++ T++
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFN 333

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGV 282
            M+   C+ + +  A ++    L+ GV
Sbjct: 334 PMLVESCRKEDVWEAERVFNEMLQRGV 360



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +V ++ LI  Y +  KL         + K+GF         L+  + K G +  A    E
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
              K G   N+   N +V+ L KDGK+D+       ME K    D  TY+++V+  C+ +
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCR-R 272

Query: 266 RLPSASKLLLSCLKS-GVRILKSAQKAVVDGLRHSGCRREAKKI 308
            L S +  L+ C+   G++       A+++GL   G    AK++
Sbjct: 273 GLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRV 316


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 263 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLI 322

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 323 DGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 382

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    ++G
Sbjct: 383 PDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNG 415



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 119/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    +   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 171 LRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 230

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 231 ELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 290

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG L+AA+     M ++    D 
Sbjct: 291 CKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDD 350

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 351 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKD 410

Query: 246 ME 247
           M+
Sbjct: 411 MQ 412



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G  P  VT+  LI G CK GR
Sbjct: 201 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGR 260

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++      P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 261 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTT 320

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 321 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 380

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 381 LKPDTXTYTMIINEFCKKGDVWKGSKL-LKDMQRNGHAPSVVTYNVLMN 428



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 101/194 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +     +P+L+TYN LI GLCK G 
Sbjct: 236 MLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 295

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G   + ITYTT++  C +        E    M ++    D   Y  
Sbjct: 296 LKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTA 355

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+G +     LL +M++ G
Sbjct: 356 LISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNG 415

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 416 HAPSVVTYNVLMNG 429



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 39/265 (14%)

Query: 48  YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107
           +NIL+   CK G +R A+ +   +   G  P+ ++Y T+M                    
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMN------------------- 183

Query: 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167
                            ++++G L E       M+  GVQ D+ +Y+ LIN  CKE K++
Sbjct: 184 ----------------GYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMD 227

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            A  L DEM  +G   +  T T LIDG CK G +  A    + M       +L  YN ++
Sbjct: 228 DANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI 287

Query: 228 DRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             L K G +  A ++ + M +K    D  TY++++   CK   L +A +     ++  +R
Sbjct: 288 YGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIR 347

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKI 308
           +   A  A++ GL   G   +A+K+
Sbjct: 348 LDDVAYTALISGLCQEGRSVDAEKM 372


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 155/309 (50%), Gaps = 4/309 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P   ++N +++GL  + +T+ AL +F  ++  G  P   TYN+L+    K+ R+     +
Sbjct: 794  PTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDL 853

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              E+   G  PNAIT+  I+    ++      L++   +    ++     Y  +I   +K
Sbjct: 854  YSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLK 913

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             GR ++A    E+M+  G   + V YN LIN + K G+++ A  L  +M K+G   D  +
Sbjct: 914  AGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKS 973

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +TIL++ LC  G I  A  + E +   G D +  +YN I++ LGK  ++D A+++F  M+
Sbjct: 974  YTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMK 1033

Query: 248  VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
             +    D +TY++++ +L  A ++  A K+       G+        A++ G   SG + 
Sbjct: 1034 NRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKD 1093

Query: 304  EAKKIQSKI 312
            +A  +  K+
Sbjct: 1094 QAFSVFKKM 1102



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 119/247 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T++ ++  L +   T   + +   ++  G  P + TY I I+ L +A R
Sbjct: 226 MISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARR 285

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I KE+ D G  P+ ITYT ++       K     E+   M+   ++ D   Y T
Sbjct: 286 IDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYIT 345

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F K+G L+    +  +M  DG   D+V+Y  LI   CK G ++ A+ +LD M  +G
Sbjct: 346 LMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKG 405

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T+  +I GL KA  +  A   LE M  +G      +Y   +D  GK G    AI
Sbjct: 406 IFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAI 465

Query: 241 NVFESME 247
           + FE+M+
Sbjct: 466 DTFETMK 472



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           +++L G C     + AL++++ +   G  P + TY+ L+  L + G  R    +L+E+  
Sbjct: 209 HLLLPGFC-----NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKS 263

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G  PN  TYT  ++   R R+      I   M  +G   D   Y  +I A    G+L +
Sbjct: 264 IGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDK 323

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A +   +M       D V+Y TL++ + K G LE      +EME  G+  D  T+TILI+
Sbjct: 324 AKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIE 383

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKD 250
            LCK+G++  A   L+ M   G   NL  YN ++  L K  ++D A+ + E+ME   VK 
Sbjct: 384 ALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKP 443

Query: 251 S-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           + F+Y   +    K+     A     +  K G+    +A  A +  L  +G   EA+ I
Sbjct: 444 TAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDI 502



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 35/248 (14%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            ++ GD +P   T+  +++GL K   ++ A+++F  +  +G  P  V YNILI G  K+G 
Sbjct: 892  LMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGE 951

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  A  + K++   G  P+  +YT +++C                             C 
Sbjct: 952  IDFACELFKKMVKEGIRPDLKSYTILVECL----------------------------CI 983

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                    GR+ EA  Y E++   G+  D VSYN +IN   K  +L+ A  L  EM+ +G
Sbjct: 984  T-------GRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRG 1036

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               D YT+  LI  L  AG +  A    E +  +G + ++  YN ++      G  D A 
Sbjct: 1037 ISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAF 1096

Query: 241  NVFESMEV 248
            +VF+ M V
Sbjct: 1097 SVFKKMMV 1104



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 132/307 (42%), Gaps = 39/307 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+  +++   K    +   R +  ++  G+ P++VTY ILI+ LCK+G +  A  
Sbjct: 337 SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFD 396

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +   G  PN  TY T++    + R+    LE+L  M+  G     F Y   I  + 
Sbjct: 397 MLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYG 456

Query: 127 K-----------------------------------IGRLKEATDYMEQMVTDGVQLDIV 151
           K                                    GR+ EA D    +   G+  D V
Sbjct: 457 KSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSV 516

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +YN L+  Y K G+++ A  LL EM  +G E D      LI+ L KAG +  A      +
Sbjct: 517 TYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRL 576

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
             +     +  YN ++  LGK+GKI  A+ +F SM       ++ T++S++  L K   +
Sbjct: 577 KNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAV 636

Query: 268 PSASKLL 274
             A K+ 
Sbjct: 637 DLALKMF 643



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 130/268 (48%), Gaps = 5/268 (1%)

Query: 20   LCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
            LCK +   +A  +F    K+ G  P L +YN L+ GL  +     A  + +++  +G  P
Sbjct: 770  LCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHP 829

Query: 79   NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
            N  TY  ++    ++++     ++ S M+ +G   +   +  +I+A VK   L +A D  
Sbjct: 830  NNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLY 889

Query: 139  EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
             ++++        +Y  LI+   K G+ E A  + +EM   G   +   + ILI+G  K+
Sbjct: 890  YELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKS 949

Query: 199  GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTY 254
            G I  A    + M K G   +L++Y  +V+ L   G+ID A+  FE +++     D+ +Y
Sbjct: 950  GEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSY 1009

Query: 255  SSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            + +++ L K++RL  A  L       G+
Sbjct: 1010 NFIINGLGKSRRLDEALSLFSEMKNRGI 1037



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 131/308 (42%), Gaps = 42/308 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P     N ++N L K    D A +MF  L+     P +VTYNIL+ GL K G+
Sbjct: 541 MISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGK 600

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   + +SG  PN IT+ +++ C  +N    L L++   M       D   Y T
Sbjct: 601 ILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNT 660

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I   ++ GR+  A  +  QM    +  D V+  TLI    + G++E A  ++ E   Q 
Sbjct: 661 IIYGLIREGRIDYAFWFFHQM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQA 719

Query: 181 ------------FEC------------------------DKYTHTILIDGLCKAGNIKGA 204
                        EC                        D +    LI  LCK      A
Sbjct: 720 CLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDA 779

Query: 205 R-LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVH 259
           + +  ++   +G    LE+YNC++D L      + A+ +FE M+      ++FTY+ ++ 
Sbjct: 780 QNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLD 839

Query: 260 NLCKAKRL 267
              K+KR+
Sbjct: 840 AHGKSKRI 847



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 142/341 (41%), Gaps = 40/341 (11%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N ML  L + R  ++ + +F  +QK      L TY  + K L   G +  A + L+++ +
Sbjct: 135 NYMLEILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTE 194

Query: 74  ----------------------------------SGHAPNAITYTTIMKCCFRNRKYKLG 99
                                              G  P+  TY+ +M    R    +  
Sbjct: 195 VGFILNAYSYNGLIHLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKI 254

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           + +L  MK  G   + + Y   I A  +  R+ +A    ++M  +G   D+++Y  LI+ 
Sbjct: 255 MNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDA 314

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            C  GKL+ A  L  +M       D+ T+  L+D   K G+++  +     M   G+  +
Sbjct: 315 LCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPD 374

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLL 275
           +  Y  +++ L K G +D A ++ + M  K  F    TY++M+  L KA+RL  A +LL 
Sbjct: 375 VVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLE 434

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316
           +    GV+    +    +D    SG    AK I +   M K
Sbjct: 435 NMESLGVKPTAFSYVLFIDYYGKSG--DPAKAIDTFETMKK 473



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 147/319 (46%), Gaps = 8/319 (2%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L+P + T+N+++    K    D A ++   +   G  P+++  N LI  L KAGR+ 
Sbjct: 509 CG-LSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVD 567

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +   L +   AP  +TY  ++    +  K    LE+  +M   G   +   + +++
Sbjct: 568 AAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLL 627

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K   +  A     +M       D+++YNT+I    +EG+++ A+    +M K+   
Sbjct: 628 DCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQM-KKFLS 686

Query: 183 CDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            D  T   LI G+ + G ++ A ++ +E++++    +N + +  +++ +  + +I+ AI+
Sbjct: 687 PDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAIS 746

Query: 242 VFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKAVVDGL 296
             E +      +D      ++  LCK K+   A  +     K+ G+     +   ++DGL
Sbjct: 747 FAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGL 806

Query: 297 RHSGCRREAKKIQSKIRMA 315
             S    +A ++   ++ A
Sbjct: 807 LGSNFTEKALELFEDMKSA 825



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 119/283 (42%), Gaps = 43/283 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P  A  N  L  L +      A  +F  L K G  P+ VTYN+L+K   KAG++  A 
Sbjct: 476 IMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKAT 535

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+   G  P+ +   +++     N  YK G                     V AA+
Sbjct: 536 QLLSEMISKGCEPDVMIINSLI-----NTLYKAG--------------------RVDAAW 570

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GRLK             +   +V+YN L+    KEGK+  A  L   M + G   + 
Sbjct: 571 KMFGRLKNLK----------LAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNT 620

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L+D L K   +  A      M  +  + ++  YN I+  L ++G+ID+A   F  
Sbjct: 621 ITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQ 680

Query: 246 ME---VKDSFTYSSMVHNLCKAKRLPSASKLLL-----SCLKS 280
           M+     D  T  +++  + +  R+  A K+++     +CL++
Sbjct: 681 MKKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQT 723


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 152/308 (49%), Gaps = 9/308 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T+ FN +L+ LCK+R+ + A ++F  ++K  FVP++ +Y IL++G  K   L     +  
Sbjct: 226 TSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYL 285

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G  P+ +TY  ++    + +KY   +E+   M+ K        YCT+I       
Sbjct: 286 EMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEK 345

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RL EA ++ E+  + G   +  +YN+L+  YC   +++ A+ ++DEM K     +  T+ 
Sbjct: 346 RLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYD 405

Query: 190 ILIDGLCKAGNIKGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           I++  L KA     A    + M N+ G +  +  Y  IV     + ++D A  V++ M+ 
Sbjct: 406 IILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKA 465

Query: 249 KDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVR----ILKSAQKAVVDGLRHSG 300
           K        YS ++ +LC   +L  A K     L +G+R    +  + ++A++D  ++  
Sbjct: 466 KGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDE 525

Query: 301 CRREAKKI 308
               A+KI
Sbjct: 526 ALNLARKI 533



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 109/263 (41%), Gaps = 39/263 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF ++     + R  + A+  F  +++ GF  E   +N L+  LCK+  +  A  +  ++
Sbjct: 193 TFALISRRHARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKM 252

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
                 P+  +YT ++                          +G+G          + RL
Sbjct: 253 KKRRFVPDIKSYTILL--------------------------EGWGKEH------NLLRL 280

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            E   Y+E M  DG + D+V+Y  LI+ YCK  K +AA  L  EME +  +   + +  L
Sbjct: 281 DEV--YLE-MKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTL 337

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           I+GL     +  A    E     GF      YN +V       +ID A  V + M     
Sbjct: 338 INGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSA 397

Query: 249 -KDSFTYSSMVHNLCKAKRLPSA 270
             +S TY  ++H+L KA+R   A
Sbjct: 398 GPNSRTYDIILHHLIKARRTNEA 420



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 2/177 (1%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG  TP   T+N ++   C +   D+A ++   ++KH   P   TY+I++  L KA R  
Sbjct: 360 CG-FTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTN 418

Query: 63  TARWILKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
            A +  +++  + G  P   TY  I++      +  L  ++   MK KG       Y  +
Sbjct: 419 EAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDL 478

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
           I +     +L EA  Y ++M+  G++     ++ L      EGK + A  L  ++ K
Sbjct: 479 ITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNLARKINK 535


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   ++ G C     D A  +F  + + GF  ++ TYN+ I G CK GR+R A  +
Sbjct: 288 PNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRV 347

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+   G  PN +TY +++ C  +  +     EI+  M R G T D    C ++    K
Sbjct: 348 FDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCK 407

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             RL +A     Q+V  G+  D+ SY  LI+  C   ++  A  LL +M  +       T
Sbjct: 408 SKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVT 467

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LIDGLC++G I  A   L  M+  G   +   Y+ ++D L K   +D A+ +F  M 
Sbjct: 468 YSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMI 527

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    D   Y+ M+   CK++R+  A  L 
Sbjct: 528 KRGLEPDVMCYTIMIDGYCKSERIDEAINLF 558



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 4/257 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N+ ++G CK     +A+R+F  + + G VP +VTYN LI  LCKAG +  A  I+K +
Sbjct: 327 TYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTM 386

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG  P+ +T   ++    ++++    + + + +   G T D + Y  +I       R+
Sbjct: 387 HRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRM 446

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + +  M    +   IV+Y+ LI+  C+ G++  A+ LL+EM  +G   D  T++IL
Sbjct: 447 GEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSIL 506

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           +D L K  ++  A      M K G + ++  Y  ++D   K  +ID AIN+F  M +K  
Sbjct: 507 LDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNL 566

Query: 250 --DSFTYSSMVHNLCKA 264
             D  TY+ + + + K+
Sbjct: 567 VPDIVTYTILFNAVFKS 583



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 12/285 (4%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T   N +L GLC N     AL     +  +GF    V+Y ILI GLC+ GR+  A  +L+
Sbjct: 107 TVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLLR 166

Query: 70  ELGDSGHAP--------NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
            +               N + Y+ ++ C  RN     G E  + M   G   + F Y ++
Sbjct: 167 MIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSL 226

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I     +G+  E    +++M+  G+ + +  +  LI+  CK G L  A  + DEM  +G+
Sbjct: 227 IRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGY 286

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E +  T T L+ G C  GN+  AR   + + + GF  ++  YN  +    K G++  A+ 
Sbjct: 287 EPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVR 346

Query: 242 VFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           VF+ M     V +  TY+S++  LCKA  +  A +++ +  +SG+
Sbjct: 347 VFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGL 391



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 143/284 (50%), Gaps = 12/284 (4%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQK------HGFVPE--LVTYNILIKGLCKAGRLR 62
            ++ I++NGLC+N   + A+ + R ++K       GF  +  +V Y+I+I  LC+ G + 
Sbjct: 143 VSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVD 202

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
                  E+  +G  PN  TY ++++      K+  G  ++  M R+G     + +  +I
Sbjct: 203 EGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLI 262

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K G L EA +  ++MV  G + +IV+   L+  YC +G ++ A  L D + + GF+
Sbjct: 263 DGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFK 322

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D +T+ + I G CK G ++ A    + M + G   N+  YN ++D L K G++  A  +
Sbjct: 323 RDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEI 382

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            ++M       D  T   ++  LCK+KRL  A  L    ++SG+
Sbjct: 383 VKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGL 426



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 111/229 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++ LCK      A  + + + + G  P++VT  IL+ GLCK+ RL  A 
Sbjct: 356 VVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAI 415

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  +L +SG  P+  +YT ++  C  +R+    + +L  M  K        Y  +I   
Sbjct: 416 LLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGL 475

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GR+  A   + +M   G   D ++Y+ L++   K+  L+ A  L ++M K+G E D 
Sbjct: 476 CRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDV 535

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
             +TI+IDG CK+  I  A      M+      ++  Y  + + + K G
Sbjct: 536 MCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSG 584



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 103/195 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   T  I+L+GLCK++  D A+ +F  L + G  P++ +Y ILI G C + R+  A 
Sbjct: 391 LTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAM 450

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+++      P+ +TY+ ++    R+ +      +L+ M  KG   D   Y  ++ A 
Sbjct: 451 NLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDAL 510

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   L EA     QM+  G++ D++ Y  +I+ YCK  +++ A  L  EM  +    D 
Sbjct: 511 WKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDI 570

Query: 186 YTHTILIDGLCKAGN 200
            T+TIL + + K+G+
Sbjct: 571 VTYTILFNAVFKSGS 585



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 12/196 (6%)

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F  +G +  +     +++  G  LD V+ NT++   C  G +  A    DE+   GF  +
Sbjct: 82  FFHLGHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLN 141

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKI------GF--DSNLEAYNCIVDRLGKDGKI 236
           + ++ ILI+GLC+ G +  A   L  + K       GF    N+  Y+ ++D L ++G +
Sbjct: 142 EVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFV 201

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
           D     +  M       + FTY S++  LC   +      L+   ++ G+ +       +
Sbjct: 202 DEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVL 261

Query: 293 VDGLRHSGCRREAKKI 308
           +DGL  +G   EA+++
Sbjct: 262 IDGLCKNGMLVEAREM 277



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 35/160 (21%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   T++ +++GLC++    NA R+   +   G +P+ +TY+IL+  L K   L  A
Sbjct: 460 NLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEA 519

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++  ++   G  P+ + YT ++                             GYC     
Sbjct: 520 VFLFNQMIKRGLEPDVMCYTIMID----------------------------GYC----- 546

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
             K  R+ EA +   +M    +  DIV+Y  L N   K G
Sbjct: 547 --KSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSG 584



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P    + IM++G CK+   D A+ +FR +     VP++VTY IL   + K+G 
Sbjct: 526 MIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGS 585

Query: 61  LRTARWILKELGDSGHAPNAITY 83
                  +  + D    P  + Y
Sbjct: 586 NSYEWKFVNVIRDINPPPRVLKY 608


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 144/312 (46%), Gaps = 37/312 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++  LC+    D A+++   + +HG +P++VTY+ ++ GLC  GR+  A  +
Sbjct: 300 PDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVEL 359

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  L   G  P+ I YTT++K      +++   E+++ M       D   + TVIA+  +
Sbjct: 360 LSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQ 419

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A   +EQM  +G   DIV+YN++I+  C E  ++ A  LL  ++  G + D  T
Sbjct: 420 KGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVT 479

Query: 188 HTILIDGLCKAGNIKGAR------LH-----------------------------LEYMN 212
              L+ GLC     + A       +H                             L+ M 
Sbjct: 480 FNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMA 539

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--VKDSFTYSSMVHNLCKAKRLPSA 270
           + G   N   YN +VD L K GK   A+ +   M     D  TY++++ N+ KA ++  A
Sbjct: 540 ENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEA 599

Query: 271 SKLLLSCLKSGV 282
             LL   + +G+
Sbjct: 600 LDLLRVMVSNGL 611



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 144/312 (46%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P T TFN ++  LC      +AL +F  +   G  P +VTY+IL+   CKA   R A 
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAM 217

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+   G  P+ +TY  ++            L ILS +   G   D   Y  V+ + 
Sbjct: 218 VLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSL 277

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               R KE  +   +M ++    D V++NT++   C++G ++ A  ++D M + G   D 
Sbjct: 278 CGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDI 337

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ ++DGLC  G +  A   L  +   G   +  AY  ++  L    + +HA  +   
Sbjct: 338 VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAE 397

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       D  T+++++ +LC+   +  A K++    ++G         +++DGL +  C
Sbjct: 398 MVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERC 457

Query: 302 RREAKKIQSKIR 313
             +A ++ S ++
Sbjct: 458 IDDAMELLSNLQ 469



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 133/279 (47%), Gaps = 6/279 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++GLC  R  D+A+ +   LQ +G  P++VT+N L+KGLC   R   A  +
Sbjct: 440 PDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQL 499

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +  S   P+A T+ T++    +       +E L  M   G   +   Y  V+ A +K
Sbjct: 500 MVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLK 559

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +EA   +  M T+G   D+++YNT+I+   K GK+E A  LL  M   G   D  T
Sbjct: 560 AGKTQEALKLLSGM-TNGTP-DLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTIT 617

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L  G+C+      A   L  +  +G   +   YN I+    ++ + D AI+ F  M 
Sbjct: 618 YRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMV 677

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
               + D  TY  ++  L     L  A +LL++    GV
Sbjct: 678 SSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGV 716



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 131/267 (49%), Gaps = 7/267 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N M+NG C+    ++A R+  G+    F P+  T+N LI+ LC  GR+  A  +  ++
Sbjct: 132 TYNTMVNGYCRAGRIEDARRLISGMP---FPPDTFTFNPLIRALCVRGRVPDALAVFDDM 188

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +P+ +TY+ ++    +   Y+  + +L  M+ KG   D   Y  +I A    G +
Sbjct: 189 LHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDV 248

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + +  + + G + D V+Y  ++   C   + +    L  EM       D+ T   +
Sbjct: 249 DEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTI 308

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           +  LC+ G +  A   +++M++ G   ++  Y+ I+D L   G++D A+ +   ++    
Sbjct: 309 VTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGC 368

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLL 274
             D+  Y++++  LC  ++   A +L+
Sbjct: 369 KPDTIAYTTVLKGLCSIEQWEHAEELM 395



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 16/296 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + PC    NI++  LC      +A R+F  L   G    +VTYN ++ G C+AGR+  AR
Sbjct: 98  VVPC----NILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDAR 150

Query: 66  WILKELGDSGHAPNAITYTTIMKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++  +      P+  T+  +++  C R R     L +   M  +G +     Y  ++ A
Sbjct: 151 RLISGM---PFPPDTFTFNPLIRALCVRGRVPD-ALAVFDDMLHRGCSPSVVTYSILLDA 206

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K    ++A   +++M   G + DIV+YN LIN  C EG ++ A  +L ++   G + D
Sbjct: 207 TCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPD 266

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+T ++  LC +   K        M       +   +N IV  L + G +D AI V +
Sbjct: 267 AVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVD 326

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            M     + D  TYSS++  LC   R+  A +LL      G +    A   V+ GL
Sbjct: 327 HMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL 382



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 42/202 (20%)

Query: 115 GFGYC---TVIAAFVKIGRL---KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
           G G C    V+   + I RL       D      T G    +V+YNT++N YC+ G++E 
Sbjct: 89  GSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATLGASATVVTYNTMVNGYCRAGRIED 148

Query: 169 AYLLL--------------------------------DEMEKQGFECDKYTHTILIDGLC 196
           A  L+                                D+M  +G      T++IL+D  C
Sbjct: 149 ARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATC 208

Query: 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSF 252
           KA   + A + L+ M   G + ++  YN +++ +  +G +D A+N+   +       D+ 
Sbjct: 209 KASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAV 268

Query: 253 TYSSMVHNLCKAKRLPSASKLL 274
           TY+ ++ +LC ++R     +L 
Sbjct: 269 TYTPVLKSLCGSERWKEVEELF 290



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 63/140 (45%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N +++ + K    + AL + R +  +G  P+ +TY  L  G+C+      A  
Sbjct: 577 TPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIR 636

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  L D G +P+A  Y  I+    +N +  + ++  + M   G   D   Y  ++ A  
Sbjct: 637 MLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALA 696

Query: 127 KIGRLKEATDYMEQMVTDGV 146
               L EA   +  + + GV
Sbjct: 697 YECLLDEAKQLLVNLCSLGV 716



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L+P T T+  +  G+C+   TD A+RM   LQ  G  P+   YN ++ G C+  R
Sbjct: 606 MVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWR 665

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
              A      +  SG  P+  TY  +++
Sbjct: 666 TDIAIDCFAHMVSSGCMPDESTYIILLE 693


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 4/258 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +L GLC     D+A++++   +  G +  + TY I+++G CKA R+    
Sbjct: 531 IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVE 590

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  EL       N+I Y  I+K   +N      L++L  MK KG   +   Y ++I   
Sbjct: 591 NLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGV 650

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             IG +++A   +++M  +G   ++V Y  LI  YCK G+++ A     EM       +K
Sbjct: 651 CNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNK 710

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+T++IDG CK GN++ A   L  M + G   ++  YN + +   K   +D+A  V + 
Sbjct: 711 FTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQ 770

Query: 246 MEVK----DSFTYSSMVH 259
           M  +    D  TY+++VH
Sbjct: 771 MATEGLPVDEITYTTLVH 788



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 136/276 (49%), Gaps = 4/276 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T N +++GLC       A R+ + + + G   + +TYN LI G C  G++     + +E
Sbjct: 466 VTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREE 525

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+  TY  +++      K    +++    K  G   +   Y  ++  + K  R
Sbjct: 526 MTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANR 585

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +++  +   ++++  ++L+ + YN +I  +C+ G + AA  LL+ M+ +G   +  T++ 
Sbjct: 586 IEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSS 645

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248
           LI G+C  G ++ A+  ++ M K GF  N+  Y  ++    K G++D A + +  M    
Sbjct: 646 LIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFN 705

Query: 249 --KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              + FTY+ M+   CK   +  A+ LL+   +SG+
Sbjct: 706 IHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGI 741



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 155/352 (44%), Gaps = 39/352 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    FN +++G CK    + AL++   +      P  VT   L++G CK+ +
Sbjct: 316 MIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQ 375

Query: 61  LRTARWILKELGDSG---HAPN----------------AITYT---------------TI 86
           +  A   L+E+  SG   H  N                A  +T               T+
Sbjct: 376 IEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTM 435

Query: 87  MKCCF-RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           + C   ++ K+    E+   +  KG          +I      G+L EA+  +++M+  G
Sbjct: 436 LVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERG 495

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           + +D ++YN LI  +C EGK+E  + L +EM K+G + D YT+  L+ GLC  G +  A 
Sbjct: 496 LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAI 555

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
              +     G  SN+  Y  +++   K  +I+   N+F  +  K    +S  Y+ ++   
Sbjct: 556 KLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAH 615

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           C+   + +A +LL +    G+    +   +++ G+ + G   +AK +  ++R
Sbjct: 616 CQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMR 667



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 138/297 (46%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +F  ++N LCK    +NA+ +F  ++K G  P +VTYN +I GLC+ GRL  A  +
Sbjct: 218 PDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFEL 277

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++   G  PN  TY  ++    +   +     IL  M   G+  +   +  +I  + K
Sbjct: 278 KEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCK 337

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G ++ A    + M++  +    V+  +L+  +CK  ++E A   L+E+   G       
Sbjct: 338 MGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDN 397

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              ++  LCK      A    + M    F  +      +V  L KDGK   A  ++  + 
Sbjct: 398 CYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLL 457

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            K S     T ++++H LC A +LP AS+++   L+ G+ + +    A++ G  + G
Sbjct: 458 EKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEG 514



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 7/306 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N  L+ L K    +    +FR +   G  P++ ++  +I  LCK G++  A  +
Sbjct: 184 PSLKTCNFXLSSLVKANEFEKCCEVFR-VMSEGACPDVFSFTNVINALCKGGKMENAIEL 242

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G +PN +TY  I+    +N +     E+   M  KG   +   Y  +I   +K
Sbjct: 243 FMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIK 302

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +    +    +++M+  G   ++V +N LI+ YCK G +E A  + D M  +       T
Sbjct: 303 LNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVT 362

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              L+ G CK+  I+ A   LE +   G   + +    +V  L K  +  H+   F  M 
Sbjct: 363 LYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRY-HSAFRFTKMM 421

Query: 248 VKDSFTYSS-----MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +  +F  S      +V  LCK  +   A++L    L+ G    K    A++ GL  +G  
Sbjct: 422 LSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKL 481

Query: 303 REAKKI 308
            EA +I
Sbjct: 482 PEASRI 487



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 97/189 (51%), Gaps = 8/189 (4%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +  +NI++   C+N     AL++   ++  G +P   TY+ LI G+C  G +  A+ ++ 
Sbjct: 605 SIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLID 664

Query: 70  ELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           E+   G  PN + YT ++    K    +      LE++S         + F Y  +I  +
Sbjct: 665 EMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP----NKFTYTVMIDGY 720

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +++A + + +M   G+  D+V+YN L N +CK   ++ A+ + D+M  +G   D+
Sbjct: 721 CKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDE 780

Query: 186 YTHTILIDG 194
            T+T L+ G
Sbjct: 781 ITYTTLVHG 789



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   T+ +M++G CK    + A  +   +++ G VP++VTYN+L  G CKA  
Sbjct: 701 MISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKAND 760

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM 87
           +  A  +  ++   G   + ITYTT++
Sbjct: 761 MDNAFKVCDQMATEGLPVDEITYTTLV 787


>gi|293336971|ref|NP_001167873.1| uncharacterized protein LOC100381578 [Zea mays]
 gi|223944573|gb|ACN26370.1| unknown [Zea mays]
 gi|414585240|tpg|DAA35811.1| TPA: hypothetical protein ZEAMMB73_503732 [Zea mays]
          Length = 640

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 161/355 (45%), Gaps = 43/355 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAG 59
           M    + P   T+N +L+GL      D A+ +F  +  +H   P++V+YNILIKG C+AG
Sbjct: 195 MRLAGVEPSRLTYNCLLDGLVNADLLDTAINVFDAMSTEHRVRPDVVSYNILIKGYCRAG 254

Query: 60  RLRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYK-------------LGLEI--- 102
           R + A   L ++ +    AP+ +TY T+M+  +    +              +G EI   
Sbjct: 255 RTQDAMARLADMREHAELAPDKVTYLTLMQRHYSEATFPQCIALFQEMEERGMGKEIPQH 314

Query: 103 -----LSAMKRKGYTFDGFG----------------YCTVIAAFVKIGRLKEATDYMEQM 141
                + A+ + G  F+                   Y  +I +  K GR KEA    E+M
Sbjct: 315 AYVLVIGALSKDGKPFEALAVFERMSKRGCPANAAMYTALIDSMGKFGREKEAMALFERM 374

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
              G++LD V+Y  ++N  C+ G LE A        ++G   +   +T LIDG  K G +
Sbjct: 375 KATGIELDAVTYGVVVNCLCRFGNLEEALACFRSCVEKGVAVNAIFYTSLIDGFGKTGMV 434

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
             A+   E M   GF  +   YN ++D L K G+ D A   ++ ME     +  +TY+ +
Sbjct: 435 DQAKELFEEMVAKGFVPDSYCYNVLIDALVKAGRTDDACAFYKRMEDDGCDQTVYTYTIL 494

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  L K  +   A K   S +  G+    +A +A+ +GL  SG    A +I  ++
Sbjct: 495 IDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRALSNGLCLSGKFSRAWRILDEL 549



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 1/188 (0%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++G  K    D A  +F  +   GFVP+   YN+LI  L KAGR   A    K + 
Sbjct: 421 YTSLIDGFGKTGMVDQAKELFEEMVAKGFVPDSYCYNVLIDALVKAGRTDDACAFYKRME 480

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G      TYT ++   F+  K +  L+   +M  KG T     +  +       G+  
Sbjct: 481 DDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRALSNGLCLSGKFS 540

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A   ++++   GV +   ++  +IN+ CK G+ + A  L D + ++G E      T++I
Sbjct: 541 RAWRILDELAPMGV-IPETAHEDMINVLCKTGRFKQACKLADGIVQKGREIPGRVRTMMI 599

Query: 193 DGLCKAGN 200
           + L KAGN
Sbjct: 600 NALRKAGN 607


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 146/312 (46%), Gaps = 9/312 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++  ++NG  K   +D A   +  +   G +P++VTYN +I  LCKA  +  
Sbjct: 190 GGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDK 249

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  P+ +TY +I+     + + K  +  L  M+  G   D   Y  ++ 
Sbjct: 250 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ +I +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D Y  +ILI    K G +  A L    M + G + N   Y  ++  L K G+++ A+  F
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M        +  Y+S++H LC   +   A +L+L  L  G+ +      +++D    S
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID----S 485

Query: 300 GCRREAKKIQSK 311
            C +E + I+S+
Sbjct: 486 HC-KEGRVIESE 496



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 152/312 (48%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    D A+ +F  +++ G  P  VTY  +I  LCK+GR
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G +P  I Y +++       K++   E++  M  +G   +   + +
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 481

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    E MV  GV+ ++++YNTLIN YC  GK++ A  LL  M   G
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + +  T++ LI+G CK   ++ A +  + M   G   ++  YN I+  L +  +   A 
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + ES    +  TY+ ++H LCK K    A ++  +     +++       ++D L
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 662 LKVGRNDEAKDL 673



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 154/309 (49%), Gaps = 4/309 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++  LCK +  D A+ +   + K+G +P+ +TYN ++ G C +G+ + A 
Sbjct: 227 ILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 286

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY+ +M    +N +     +I  +M ++G   +   Y T++  +
Sbjct: 287 GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGY 346

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  D   ++ LI  Y K+GK++ A L+  +M +QG   + 
Sbjct: 347 ATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNA 406

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G ++ A L+ E M   G       YN ++  L    K + A  +   
Sbjct: 407 VTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILE 466

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    ++  ++S++ + CK  R+  + KL    ++ GV+        +++G   +G 
Sbjct: 467 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGK 526

Query: 302 RREAKKIQS 310
             EA K+ S
Sbjct: 527 MDEAMKLLS 535



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 148/315 (46%), Gaps = 6/315 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++++++ LCKN     A ++F  + K G  PE+ TY  L++G    G L    
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G  P+   ++ ++    +  K    + + S M+++G   +   Y  VI   
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+++A  Y EQM+ +G+    + YN+LI+  C   K E A  L+ EM  +G   + 
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
                +ID  CK G +  +    E M +IG   N+  YN +++     GK+D A+ +   
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       ++ TYS++++  CK  R+  A  L      SGV         ++ GL  +  
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT-- 594

Query: 302 RREAKKIQSKIRMAK 316
           RR A   +  +R+ +
Sbjct: 595 RRTAAAKELYVRITE 609



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 47/333 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            F  +L GLC ++ T +A+ +  R + + G +P + +YNIL+KGLC   R + A  +L  
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183

Query: 71  LGDS---GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + D    G  P+ ++YTT++   F+             M  +G   D   Y ++IAA  K
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A + +  MV +GV  D ++YN++++ YC  G+ + A   L +M   G E D  T
Sbjct: 244 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVT 303

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD------------------- 228
           +++L+D LCK G    AR   + M K G    +  Y  ++                    
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363

Query: 229 ----------------RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
                              K GK+D A+ VF  M  +    ++ TY +++  LCK+ R+ 
Sbjct: 364 RNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            A       +  G+    S    V + L H  C
Sbjct: 424 DAMLYFEQMIDEGL----SPGNIVYNSLIHGLC 452



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 10/287 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ I++   C+    D        + K GF  + + +  L+KGLC   R   A
Sbjct: 82  EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 141

Query: 65  -RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM---KRKGYTFDGFGYC 119
              +L+ + + G  PN  +Y  ++K  C  NR  +  LE+L  M   +  G   D   Y 
Sbjct: 142 MDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQE-ALELLHMMADDRGGGSPPDVVSYT 200

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           TVI  F K G   +A     +M+  G+  D+V+YN++I   CK   ++ A  +L+ M K 
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN 260

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T+  ++ G C +G  K A   L+ M   G + ++  Y+ ++D L K+G+   A
Sbjct: 261 GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEA 320

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             +F+SM  +    +  TY +++        L     LL   +++G+
Sbjct: 321 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 367



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 112/249 (44%), Gaps = 8/249 (3%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P+L TY ILI   C+AGRL      L  +   G   +AI +T ++K    +++    ++I
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 103 -LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD---GVQLDIVSYNTLIN 158
            L  M   G   + F Y  ++       R +EA + +  M  D   G   D+VSY T+IN
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            + KEG  + AY    EM  +G   D  T+  +I  LCKA  +  A   L  M K G   
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           +   YN I+      G+   AI   + M       D  TYS ++  LCK  R   A K+ 
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324

Query: 275 LSCLKSGVR 283
            S  K G++
Sbjct: 325 DSMTKRGLK 333



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 43/297 (14%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +++  CK      + ++F  + + G  P ++TYN LI G C AG++  A  +L 
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  PN +TY+T++                             GYC       KI 
Sbjct: 536 GMVSVGLKPNTVTYSTLIN----------------------------GYC-------KIS 560

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A    ++M + GV  DI++YN ++    +  +  AA  L   + + G + +  T+ 
Sbjct: 561 RMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA--YNCIVDRLGKDGKIDHAINVFESME 247
           I++ GLCK   +    L + + N    D  LEA  +N ++D L K G+ D A ++F +  
Sbjct: 621 IILHGLCK-NKLTDDALQM-FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFS 678

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               V + +TY  M  N+     L    +L LS   +G  +       +V  L   G
Sbjct: 679 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 735



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 20/295 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG C     D A+++  G+   G  P  VTY+ LI G CK  R+  A  +
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVL 568

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+  SG +P+ ITY  I++  F+ R+     E+   +   G   +   Y  ++    K
Sbjct: 569 FKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 628

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                +A    + +    ++L+  ++N +I+   K G+ + A  L       G   + +T
Sbjct: 629 NKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWT 688

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI-NVFESM 246
           + ++      A NI G  L LE ++++    ++E   C VD     G ++  +  + +  
Sbjct: 689 YRLM------AENIIGQGL-LEELDQLFL--SMEDNGCTVD----SGMLNFIVRELLQRG 735

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-----VRILKSAQKAVVDGL 296
           E+  + TY SM+     +    +AS L +  L  G      R L    K+ ++ L
Sbjct: 736 EITRAGTYLSMIDEKHFSLEASTAS-LFIDLLSGGKYQEYYRFLPEKYKSFIESL 789



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 8/239 (3%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P+  TY  ++ CC R  +  LG   L  + +KG+  D   +  ++       R  +A D 
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 138 MEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFECDKYTHTILID 193
           + + +T+ G   ++ SYN L+   C E + + A  LL  M      G   D  ++T +I+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVK 249
           G  K G+   A      M   G   ++  YN I+  L K   +D A+ V  +M     + 
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           D  TY+S++H  C + +   A   L      GV         ++D L  +G   EA+KI
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 45/257 (17%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY--MEQMVTDGVQLDIVSYNTLINL 159
           +   + R+G     +G    +A   +       + Y  M +   D V  D+ +Y  LI  
Sbjct: 37  VFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGC 96

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDS 218
            C+ G+L+  +  L  + K+GF  D    T L+ GLC       A  + L  M ++G   
Sbjct: 97  CCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIP 156

Query: 219 NLEAYNCIV---------------------DRLG-----------------KDGKIDHAI 240
           N+ +YN ++                     DR G                 K+G  D A 
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + +  M     + D  TY+S++  LCKA+ +  A ++L + +K+GV        +++ G 
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276

Query: 297 RHSGCRREAKKIQSKIR 313
             SG  +EA     K+R
Sbjct: 277 CSSGQPKEAIGFLKKMR 293



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL     TFNIM++ L K    D A  +F     +G VP   TY ++ + +   G L   
Sbjct: 646 DLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEEL 705

Query: 65  RWILKELGDSG 75
             +   + D+G
Sbjct: 706 DQLFLSMEDNG 716


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 154/325 (47%), Gaps = 7/325 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    FN ++ G  ++   + A  +++ + + G+ P+ V+Y+ILI GL K G+
Sbjct: 142 MMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGK 201

Query: 61  LRTARWILKELG--DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           L  +  IL E+    +G+ PN IT++T++    R  + +  LE+  +M   G   + + Y
Sbjct: 202 LDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTY 261

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME- 177
            T+IA   +  ++ +A +  E+M    +  D V+YN+LI  YCK G ++ A  L  EM  
Sbjct: 262 TTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSG 321

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
             G +    T   LIDG CK G +  A   +  M   G  ++   Y  ++  L +  K+D
Sbjct: 322 GAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLD 381

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            A+ V++ M  K    D  +  S V  LCK   +  A  +  +  KSG        + + 
Sbjct: 382 EALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILS 441

Query: 294 DGLRHSGCRREAKKIQSKIRMAKIS 318
           + L   G   +A+K+    +   I+
Sbjct: 442 ESLIKLGRVEDAQKLMEPAKARDIT 466



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 160/353 (45%), Gaps = 43/353 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARW 66
           P   T+N+++N  C       AL +F+ +++   V P+  TYN LI GLC +G    AR 
Sbjct: 43  PSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARK 102

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRK----YKLGLEILSA----------------- 105
           +L E+ D   A N  TY++I+K   +  K    YK+  E+++A                 
Sbjct: 103 LLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFA 162

Query: 106 --------------MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV--TDGVQLD 149
                         M   GY  D   Y  +I    KIG+L E+   + +M     G   +
Sbjct: 163 RSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPN 222

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +++++TLI+  C+ G+LE A  +   M + G + +KYT+T LI GLC+A  +  AR   E
Sbjct: 223 VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFE 282

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-----VKDSFTYSSMVHNLCKA 264
            M +     +  AYN ++    K G +D A  ++  M           T+++++   CK 
Sbjct: 283 KMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKL 342

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            +L  A++L+      G+       + ++ GL  +    EA ++  ++R  K 
Sbjct: 343 GKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKF 395



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 149/304 (49%), Gaps = 7/304 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            ++ ++  L K      AL +F  ++    VP LVTYN+LI   C AG    A  + + +
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 72  GDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
                  P+  TY T++     +   +   ++LS M+ K    + F Y ++I + VK  +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            +E+   +E+M+  G   D+ ++N ++  + +   +E A  +   M + G++ D  ++ I
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 191 LIDGLCKAGNIKGAR--LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-E 247
           LI GL K G +  +   L    M   G+  N+  ++ ++  L + G+++ A+ VF SM E
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 251

Query: 248 V---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                + +TY++++  LC+A+++  A +L     ++ +     A  +++ G    G   E
Sbjct: 252 AGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDE 311

Query: 305 AKKI 308
           A+K+
Sbjct: 312 AEKL 315



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 5/205 (2%)

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           G  Y  V+ +  K G L +A +  E M ++     +V+YN LIN  C  G+   A  L  
Sbjct: 10  GDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQ 69

Query: 175 EMEKQG-FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            M+++   E D++T+  LI GLC +GN +GAR  L  M      +N+  Y+ I+  L K+
Sbjct: 70  SMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKE 129

Query: 234 GKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            K + +  V E M       D F ++ ++    ++  +  A ++    ++SG +    + 
Sbjct: 130 AKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSY 189

Query: 290 KAVVDGLRHSGCRREAKKIQSKIRM 314
             ++ GL   G   E+ KI S++ M
Sbjct: 190 HILIHGLAKIGKLDESLKILSEMAM 214


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 140/283 (49%), Gaps = 5/283 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+   L P   T   +++GLCK  +T+ A R+F  L K   + P + TY ++I G CK G
Sbjct: 277 MVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEG 336

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +L  + + G APN  TYTT++    R   +    E+++ MK +G+  + + Y 
Sbjct: 337 KLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYN 396

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I  F K G++++A   +    + G+  D V+Y  LI  +CK+G +  A  L ++M + 
Sbjct: 397 AIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAEN 456

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D  T+T +I   C+   ++ ++   +    IG     + Y  ++    + GK   A
Sbjct: 457 SCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSA 516

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           + VFE M     + D  TY +++  LCK  RL  A  L  + L
Sbjct: 517 LKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETML 559



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 140/294 (47%), Gaps = 12/294 (4%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIK-GLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
            A  M   L+ HG    + T N +++ GL +      AR     +G     P+A ++  +
Sbjct: 131 EATDMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQAFDGMGVR---PDARSFRAL 187

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +  C +  +++    +L+AM R+G++ D      V+ AF + GR ++      +MV  G 
Sbjct: 188 VLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGN 247

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-R 205
             ++V+Y   ++  CK G ++ A+ +L+EM  +G + + YTHT LIDGLCK G  + A R
Sbjct: 248 PPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFR 307

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI----NVFESMEVKDSFTYSSMVHNL 261
           L L+ +    +  N+  Y  ++    K+GK+  A      + E     ++ TY++++   
Sbjct: 308 LFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGH 367

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
           C+      A +L+      G         A++ G    G  ++A K+   +RMA
Sbjct: 368 CRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKV---LRMA 418



 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + PC  T   +    C+   T  A+    GL K     +    + L++ L     
Sbjct: 558 MLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKRQ---QAHAADALVRKLSAVDN 614

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           L  A   LK + D  +A +  TYT+ +  C+ + +Y L  EI   + ++
Sbjct: 615 LDAASLFLKNVLDKHYAVDHATYTSFINSCYESNRYALASEISEKISKR 663


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 142/271 (52%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN++++ LCK      A ++   +   G VP  VTYN L+ GLC  G+L  A  +
Sbjct: 243 PNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSL 302

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  +   PN IT+ T++    ++ +   G+ +L +++ KGY  + F Y ++I+   K
Sbjct: 303 LNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFK 362

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+ +      ++MV  G + + + Y+ LI+  C+EGK + A   L EM+ +G   + +T
Sbjct: 363 EGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFT 422

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+ G  +AG+I  A L  + M     + +   Y+ +++ L K+GK+  A+ V++ M 
Sbjct: 423 YSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQML 482

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            +    D   YSSM+H  C A+ +    KL 
Sbjct: 483 SRGIKLDVVAYSSMIHGFCNAQLVEQGMKLF 513



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 132/260 (50%), Gaps = 6/260 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            ++ P   +FN+++  LC+    D A+ +FRG+     V +  TY+ L+ GLC  GR+  
Sbjct: 169 SNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDE 228

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L E+   G  PN + +  ++    +        +++  M  KG   +   Y +++ 
Sbjct: 229 AVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVH 288

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
                G+L +A   + +MV +    + +++ TL++ + K G+      +L  +E++G+  
Sbjct: 289 GLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRG 348

Query: 184 DKYTHTILIDGLCKAGNIK-GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           ++++++ LI GL K G  + G +L  E + K G   N   Y+ ++D L ++GK D A   
Sbjct: 349 NEFSYSSLISGLFKEGKGEHGMQLWKEMVEK-GCKPNTIVYSALIDGLCREGKPDEAKEY 407

Query: 243 FESMEVK----DSFTYSSMV 258
              M+ K    +SFTYSS++
Sbjct: 408 LIEMKNKGHTPNSFTYSSLM 427



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 119/248 (47%), Gaps = 2/248 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TF  +++G  K+    + +R+   L++ G+     +Y+ LI GL K G+
Sbjct: 306 MVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGK 365

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 + KE+ + G  PN I Y+ ++    R  K     E L  MK KG+T + F Y +
Sbjct: 366 GEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSS 425

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + + G + +A    ++M  +      V Y+ LIN  CK GKL+ A ++  +M  +G
Sbjct: 426 LMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRG 485

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            + D   ++ +I G C A  + +G +L  + + +      ++  YN +++       +  
Sbjct: 486 IKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSR 545

Query: 239 AINVFESM 246
           AI++  +M
Sbjct: 546 AIDILNTM 553



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 135/316 (42%), Gaps = 9/316 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV-TYNILIKGLCKAG 59
           M C +      +F IM     K      AL +F  +       + V ++N ++  + + G
Sbjct: 91  MKCENRVFIEKSFIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEG 150

Query: 60  RLRTARWILKELGDSGH----APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
               A      + DS       PN +++  ++K   R       +E+   M  +    DG
Sbjct: 151 CFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADG 210

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
           + Y T++      GR+ EA   +++M  +G   + V++N LI+  CK+G L  A  L+D 
Sbjct: 211 YTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDN 270

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M  +G   ++ T+  L+ GLC  G +  A   L  M       N   +  +VD   K G+
Sbjct: 271 MFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGR 330

Query: 236 IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
               + V  S+E K    + F+YSS++  L K  +     +L    ++ G +       A
Sbjct: 331 ALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSA 390

Query: 292 VVDGLRHSGCRREAKK 307
           ++DGL   G   EAK+
Sbjct: 391 LIDGLCREGKPDEAKE 406



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 20/266 (7%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  ++ +++GLC+    D A      ++  G  P   TY+ L+ G  +AG +  A  +
Sbjct: 383 PNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILV 442

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+ D+    + + Y+ ++    +N K K  L +   M  +G   D   Y ++I  F  
Sbjct: 443 WKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCN 502

Query: 128 IGRLKEATDYMEQMV--TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              +++      QM+     +Q D+V+YN L+N +C +  +  A  +L+ M  QG + D 
Sbjct: 503 AQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDF 562

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  I +  L    N+   +   E++++            +V RL K  +   A N+ E 
Sbjct: 563 ITCDIFLKTL--RDNMDPPQDGREFLDE------------LVVRLIKRQRTVGASNIIEV 608

Query: 246 MEVK----DSFTYSSMVHNLCKAKRL 267
           M  K       T++  V  LCK  ++
Sbjct: 609 MLQKFLLPKPSTWALAVQQLCKPMKV 634



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINL 159
           ++L  MK +   F    +  +  A+ K    ++A D   +M  +   +  + S+NT++N+
Sbjct: 86  QLLHQMKCENRVFIEKSFIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNV 145

Query: 160 YCKEG----KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
             +EG     LE    ++D       + +  +  ++I  LC+ GN+  A      M+   
Sbjct: 146 VIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRN 205

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT----YSSMVHNLCKAKRLPSAS 271
             ++   Y+ ++  L  +G+ID A+++ + M+V+ +F     ++ ++  LCK   L  AS
Sbjct: 206 CVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRAS 265

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGL 296
           KL+ +    G    +    ++V GL
Sbjct: 266 KLVDNMFLKGCVPNEVTYNSLVHGL 290


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 4/258 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +L GLC     D+A++++   +  G +  + TY I+++G CKA R+    
Sbjct: 554 IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVE 613

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  EL       N+I Y  I+K   +N      L++L  MK KG   +   Y ++I   
Sbjct: 614 NLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGV 673

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             IG +++A   +++M  +G   ++V Y  LI  YCK G+++ A     EM       +K
Sbjct: 674 CNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNK 733

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+T++IDG CK GN++ A   L  M + G   ++  YN + +   K   +D+A  V + 
Sbjct: 734 FTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQ 793

Query: 246 MEVK----DSFTYSSMVH 259
           M  +    D  TY+++VH
Sbjct: 794 MATEGLPVDEITYTTLVH 811



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 136/276 (49%), Gaps = 4/276 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T N +++GLC       A R+ + + + G   + +TYN LI G C  G++     + +E
Sbjct: 489 VTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREE 548

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+  TY  +++      K    +++    K  G   +   Y  ++  + K  R
Sbjct: 549 MTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANR 608

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +++  +   ++++  ++L+ + YN +I  +C+ G + AA  LL+ M+ +G   +  T++ 
Sbjct: 609 IEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSS 668

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248
           LI G+C  G ++ A+  ++ M K GF  N+  Y  ++    K G++D A + +  M    
Sbjct: 669 LIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFN 728

Query: 249 --KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              + FTY+ M+   CK   +  A+ LL+   +SG+
Sbjct: 729 IHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGI 764



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 152/354 (42%), Gaps = 43/354 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    FN +++G CK    + AL++   +      P  VT   L++G CK+ +
Sbjct: 339 MIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQ 398

Query: 61  LRTARWILKELGDSG---HAPNAITYTTIMKCC--------FRNRKYKL----------- 98
           +  A   L+E+  SG   H  N   Y+ +   C        FR  K  L           
Sbjct: 399 IEHAENALEEILSSGLSIHPDNC--YSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLL 456

Query: 99  ---------------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
                            E+   +  KG          +I      G+L EA+  +++M+ 
Sbjct: 457 TMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLE 516

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
            G+ +D ++YN LI  +C EGK+E  + L +EM K+G + D YT+  L+ GLC  G +  
Sbjct: 517 RGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDD 576

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVH 259
           A    +     G  SN+  Y  +++   K  +I+   N+F  +  K    +S  Y+ ++ 
Sbjct: 577 AIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIK 636

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             C+   + +A +LL +    G+    +   +++ G+ + G   +AK +  ++R
Sbjct: 637 AHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMR 690



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +F  ++N LCK    +NA+ +F  ++K G  P +VTYN +I GLC+ GRL  A  +
Sbjct: 241 PDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFEL 300

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +++   G  PN  TY  ++    +   +     +L  M   G+  +   +  +I  + K
Sbjct: 301 KEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCK 360

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G ++ A    + M++  +    V+  +L+  +CK  ++E A   L+E+   G       
Sbjct: 361 MGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDN 420

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              ++  LCK      A    + M    F  +      +V  L KDGK   A  ++  + 
Sbjct: 421 CYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLL 480

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            K S     T ++++H LC A +LP AS+++   L+ G+ + +    A++ G  + G
Sbjct: 481 EKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEG 537



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 135/306 (44%), Gaps = 7/306 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N +L+ L K    +    +FR +   G  P++ ++  +I  LCK G++  A  +
Sbjct: 207 PSLKTCNFLLSSLVKANEFEKCCEVFR-VMSEGACPDVFSFTNVINALCKGGKMENAIEL 265

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G +PN +TY  I+    +N +     E+   M  KG   +   Y  +I   +K
Sbjct: 266 FMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIK 325

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +    +    +++M+  G   ++V +N LI+ YCK G +E A  + D M  +       T
Sbjct: 326 LNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVT 385

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              L+ G CK+  I+ A   LE +   G   + +    +V  L K  +  H+   F  M 
Sbjct: 386 LYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRY-HSAFRFTKMM 444

Query: 248 VKDSFTYSS-----MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +  +F  S      +V  LCK  +   A++L    L+ G    K    A++ GL  +G  
Sbjct: 445 LSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKL 504

Query: 303 REAKKI 308
            EA +I
Sbjct: 505 PEASRI 510



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 97/189 (51%), Gaps = 8/189 (4%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           +  +NI++   C+N     AL++   ++  G +P   TY+ LI G+C  G +  A+ ++ 
Sbjct: 628 SIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLID 687

Query: 70  ELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           E+   G  PN + YT ++    K    +      LE++S         + F Y  +I  +
Sbjct: 688 EMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP----NKFTYTVMIDGY 743

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +++A + + +M   G+  D+V+YN L N +CK   ++ A+ + D+M  +G   D+
Sbjct: 744 CKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDE 803

Query: 186 YTHTILIDG 194
            T+T L+ G
Sbjct: 804 ITYTTLVHG 812



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   T+ +M++G CK    + A  +   +++ G VP++VTYN+L  G CKA  
Sbjct: 724 MISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKAND 783

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM 87
           +  A  +  ++   G   + ITYTT++
Sbjct: 784 MDNAFKVCDQMATEGLPVDEITYTTLV 810


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 149/345 (43%), Gaps = 39/345 (11%)

Query: 8   PCTATFNIMLNGLCK--------------------------NRYTDNALR---------M 32
           P T T+ IM+NGLCK                          N   D  ++          
Sbjct: 273 PTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKT 332

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
            R + ++G  P++ TYN LI G C+ G++  A  +L+     G +PN ++YT ++    +
Sbjct: 333 LRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCK 392

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
             K     ++   M  KG+  D   Y  ++   V  G +  A    ++MV  GV  D   
Sbjct: 393 QGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANV 452

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN L+N  CK+G+L AA LLL EM  Q    D +    L+DG  + G +  A+   E   
Sbjct: 453 YNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTI 512

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G D  +  YN ++    K G ++ A+   + M+      D FTYS+++    K   L 
Sbjct: 513 AKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLH 572

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           +A KL    +K   +       ++++G   +G    A+K   ++R
Sbjct: 573 NALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMR 617



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 142/298 (47%), Gaps = 4/298 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           IM+ GLCK R  +   ++       G +P +V YN L+ G  K G +  A  + KEL   
Sbjct: 210 IMVRGLCKERKVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMK 269

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P   TY  ++    +   +K    +L  MK +G   +   Y +++ A +K G   E 
Sbjct: 270 GFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEV 329

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              +  +  +G + DI +YNTLI+  C++GK+  A  LL+   K+G   +K ++T LI  
Sbjct: 330 GKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHV 389

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKD 250
            CK G    A      M + G   +L AY  +V  L   G++D A+ V + M     + D
Sbjct: 390 YCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPD 449

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +  Y+ +++ LCK  RL +A  LL+  L   + +       +VDG    G   EAKK+
Sbjct: 450 ANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKL 507



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 120/255 (47%), Gaps = 4/255 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GL      D AL +   + + G +P+   YN+L+ GLCK GRL  A+ +L E
Sbjct: 416 VAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVE 475

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +     + +A    T++    R+ K     ++      KG      GY  +I  + K G 
Sbjct: 476 MLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGM 535

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + +A   +++M       D  +Y+T+I+ Y K+  L  A  L  +M KQ  + +  T+T 
Sbjct: 536 MNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTS 595

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           LI+G C+ G+   A    E M   G   N+  Y  ++    K+GKI  A + FE M    
Sbjct: 596 LINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGKISKACSFFELMLLNR 655

Query: 248 -VKDSFTYSSMVHNL 261
            + +  T++ +++ L
Sbjct: 656 CIPNDVTFNYLINGL 670



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 118/269 (43%), Gaps = 4/269 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   ++  +++  CK      A  +F G+ + G   +LV Y  L+ GL  AG +  A 
Sbjct: 376 LSPNKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVAL 435

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++ + G  P+A  Y  +M    +  +      +L  M  +  + D F   T++  F
Sbjct: 436 TVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGF 495

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++ G+L EA    E  +  G+   +V YN +I  YCK G +  A   +  M+      D+
Sbjct: 496 IRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDE 555

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T++ +IDG  K  ++  A      M K     N+  Y  +++   + G    A   FE 
Sbjct: 556 FTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEE 615

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSA 270
           M       +  TY+ ++   CK  ++  A
Sbjct: 616 MRSSGLKPNVVTYTILIGCFCKEGKISKA 644



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 139/329 (42%), Gaps = 20/329 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           M+   + P    +N+++NGLC K R +   L +   L ++  +   V+   L+ G  + G
Sbjct: 441 MVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSAT-LVDGFIRHG 499

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A+ + +     G  P  + Y  ++K   +       L  +  MK   ++ D F Y 
Sbjct: 500 KLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYS 559

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I  +VK   L  A     QMV    + ++V+Y +LIN +C+ G    A    +EM   
Sbjct: 560 TIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSS 619

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + +  T+TILI   CK G I  A    E M       N   +N +++ L  +     +
Sbjct: 620 GLKPNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVS 679

Query: 240 INVFESMEVKDSF------------------TYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               ES+E+K S                    Y+S++  LC  K + +A +L       G
Sbjct: 680 NKANESLEIKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKG 739

Query: 282 VRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           +     +  A+V GL   G  +E K   S
Sbjct: 740 IFPDPVSFAALVYGLCLEGRSKEWKNTIS 768



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 8/232 (3%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           + P+ I    ++    + +K ++  ++   M ++   +D +  C ++    K  +++E  
Sbjct: 166 YLPDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNYSVCIMVRGLCKERKVEEGR 225

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             +      G   +IV YNTL++ Y K G +E A  L  E++ +GF     T+ I+I+GL
Sbjct: 226 KLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGL 285

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHAIN---VFESMEVKDS 251
           CK  N K     L  M + G D N++ YN IVD   K G KI+       + E+    D 
Sbjct: 286 CKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDI 345

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            TY++++   C+  ++  A +LL   +K G+    S  K     L H  C++
Sbjct: 346 TTYNTLISGSCRDGKVHEAEELLEHAIKRGL----SPNKLSYTPLIHVYCKQ 393


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 117/238 (49%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +FNI+L+G CK R  D+A ++   + K GF P +V+Y   I+  CK    R    I  E+
Sbjct: 271 SFNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEM 330

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +    PN ITYT  M    + ++    LE+   MK      D   Y ++I    + GRL
Sbjct: 331 QEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRL 390

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           K+A D  E M   GV  D+++YNT+I   C   + E A  LL  ME+   + D  T+  L
Sbjct: 391 KDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPL 450

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           +   C+   IK  +  L +M K     +L  Y  +V  L K GK++ A + FE M +K
Sbjct: 451 LKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMK 508



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 136/286 (47%), Gaps = 11/286 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRL 61
           CG + P     + +LN  C +     AL +F   +   G+V     Y++++  L +  + 
Sbjct: 125 CG-VNPTNNLISQLLNRFCNDWVP--ALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKKF 181

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
                ++KE+ +     + +T   +M+   R   ++  +E    +++ G   D      +
Sbjct: 182 SFMWELVKEMENLEGYVSLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALNVL 241

Query: 122 IAAFVKIGRLKEA-TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           + A VK G ++ A + +ME    D + +D  S+N L++ YCK  KL+ A  ++DEM+KQG
Sbjct: 242 MDALVKEGSVEHAYSAFME--FKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQG 299

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F+ +  ++T  I+  CK  + +        M +     N+  Y   +  LGK  +++ A+
Sbjct: 300 FQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKAL 359

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            V+E M+    V D+  YSS++  L ++ RL  A  +     K GV
Sbjct: 360 EVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGV 405



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 124/288 (43%), Gaps = 32/288 (11%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N++++ L K    ++A   F   +    V +  ++NIL+ G CKA +L  AR I+ E+ 
Sbjct: 238 LNVLMDALVKEGSVEHAYSAFMEFKDSIHV-DFQSFNILLHGYCKARKLDDARKIMDEMD 296

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN ++YT  ++   + + ++    I S M+ K    +   Y   + A  K  ++ 
Sbjct: 297 KQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVN 356

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +A +  E M ++    D   Y++LI +  + G+L+ A+ + ++M+KQG   D  T+  +I
Sbjct: 357 KALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMI 416

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
              C          HLE  N +     +E  +C                        D  
Sbjct: 417 TSACT---------HLEEENALKLLRRMEEDSC----------------------KPDIQ 445

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           TY+ ++   C+ KR+     LL    K+ + I       +V GL  SG
Sbjct: 446 TYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSG 493



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 53/105 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N M+   C +   +NAL++ R +++    P++ TY  L+K  C+  R++  +
Sbjct: 405 VSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLK 464

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           ++L  +  +  + +  TY  ++    ++ K +L       M  KG
Sbjct: 465 FLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKG 509


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 141/281 (50%), Gaps = 12/281 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           + P   + N+++   CKN  T D A+ +FR +  HG  P+  TY  LI GLC+   +  A
Sbjct: 180 IPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEA 239

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +L+E+   G +P+ +TYT+I+    +       + +L  MK K    + F Y +++  
Sbjct: 240 KELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDG 299

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K G    A D +E M+   ++ +++SY+TL+N  C EGK+  A  + D M+ QGF+ D
Sbjct: 300 FCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPD 359

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYM-------NKIGFDSNLEAYNCIVDRLGKDGKID 237
              +  +++ LC     + A   L+ M       N+I +  ++  +N ++  L      +
Sbjct: 360 AGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSN 419

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            A  ++ S+  +       T++S++   C  K LP  S++L
Sbjct: 420 RAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRIL 460



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK-AGRLRTARW 66
           P   ++  +L  L +     +A R +R ++K G  P + + N+LIK  CK +G +  A  
Sbjct: 147 PTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMH 206

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + + + + G  P++ TY T++    R R      E+L  M+ KG +     Y ++I    
Sbjct: 207 LFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLC 266

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++  + EA   +E M    ++ ++ +Y++L++ +CK G    A  +L+ M ++    +  
Sbjct: 267 QLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMI 326

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +++ L++GLC  G I  A    + M   GF  +   Y  IV+ L    +   A N  + M
Sbjct: 327 SYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEM 386

Query: 247 EV----KDSFTYS-------SMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +     +  T+S        ++H LC       A +L LS L  G+ I
Sbjct: 387 VLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISI 435



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 128/281 (45%), Gaps = 5/281 (1%)

Query: 39  HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98
           +GF  +L T++++I  L  A + R A  +L  + +           +I +   R  K   
Sbjct: 73  NGFKHDLNTFSLMISKLISANQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRIHKPLD 132

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            + +   M+          Y +V+A  V+  +LK A  +   M   G+   + S N LI 
Sbjct: 133 SIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIK 192

Query: 159 LYCK-EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
            +CK  G ++ A  L   M   G E D YT+  LI+GLC+  +I  A+  L+ M   G  
Sbjct: 193 AFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCS 252

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKL 273
            ++  Y  I+  L +   +D A+ + E M+ K+     FTYSS++   CK      A  +
Sbjct: 253 PSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDI 312

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           L   ++  +R    +   +++GL + G   EA +I  ++++
Sbjct: 313 LELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKL 353



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 15/184 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   +++ +LNGLC     + AL +F  ++  GF P+   Y  ++  LC   R
Sbjct: 316 MIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSR 375

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFR-----------NRKYKLGLEILSAMKRK 109
            + A   L E+   G  PN IT++  ++   R           NR ++L L +L+    +
Sbjct: 376 FQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLT----R 431

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           G +     + +++  F     L + +  +++MV +G       ++T++N +C E K   A
Sbjct: 432 GISITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVNCFCDERKACDA 491

Query: 170 YLLL 173
             LL
Sbjct: 492 MKLL 495



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 7/183 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T++ +++G CK  ++  A  +   + +    P +++Y+ L+ GLC  G++  A
Sbjct: 285 NIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEA 344

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-------KRKGYTFDGFG 117
             I   +   G  P+A  Y  I+ C     +++     L  M        R  ++     
Sbjct: 345 LEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRT 404

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           +  VI     I     A      ++T G+ + + ++N+L+  +C +  L     +LDEM 
Sbjct: 405 HNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMV 464

Query: 178 KQG 180
             G
Sbjct: 465 ING 467


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 132/274 (48%), Gaps = 4/274 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N++++G C+    ++A+ +++ L K G  P  V +  LI G CKA R   A+
Sbjct: 252 MQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAK 311

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G AP    Y ++M   FR+   +  L +   M R G   D F    V+   
Sbjct: 312 GMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGL 371

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G++  A  +++ +  DGV L+  +YN LI+ YC+ G LE A      M + G E + 
Sbjct: 372 CDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNV 431

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +++ LIDG  K G ++ A      M   G + N+  Y  ++    K+G ID A  + + 
Sbjct: 432 VSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKE 491

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLL 275
           M       ++ T S +V  LC+  R+  A + ++
Sbjct: 492 MIENGISPNAITVSVLVDGLCRENRVQEAVRFVM 525



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP  A   +++  L +    D AL +FR L+    +P L   N ++ GL KA R   A  
Sbjct: 117 TPAPA-LGVLVIALSQMGLLDEALYVFRRLRT---LPALPACNAVLDGLVKARRPGCAWE 172

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  E+   G  P+ +TY T++  C          E+   M  +    +   Y T+I A  
Sbjct: 173 LFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALC 232

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G + +A    + M   G+Q +  +YN L++ +C+   + +A +L  E+ K G   +  
Sbjct: 233 EEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAV 292

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
             T LIDG CKA     A+     M + G    +  YN ++D   + G    A+ +++ M
Sbjct: 293 IFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEM 352

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
                  D FT S +V  LC   ++  A + L    + GV +  +A  A++D
Sbjct: 353 TRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALID 404



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 102/262 (38%), Gaps = 52/262 (19%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T +I++ GLC       A R  +G+Q+ G       YN LI   C+ G L  A 
Sbjct: 357 LCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEAL 416

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
                + + G  PN ++Y++++    +  K ++ + I + M  KG   +   Y  +I   
Sbjct: 417 ATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGH 476

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA---------------- 169
            K G +  A    ++M+ +G+  + ++ + L++  C+E +++ A                
Sbjct: 477 AKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIH 536

Query: 170 ---------------------------YL---------LLDEMEKQGFECDKYTHTILID 193
                                      YL         L   M K G   D +T+T+LI 
Sbjct: 537 SVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIR 596

Query: 194 GLCKAGNIKGARLHLEYMNKIG 215
           G C  G +  A +    M KIG
Sbjct: 597 GQCMLGYVLNAMMLYADMMKIG 618



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 17/164 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  +++G  KN   D A R+ + + ++G  P  +T ++L+ GLC+  R
Sbjct: 457 MVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENR 516

Query: 61  LRTA-RWILKELG---DSGHA-------------PNAITYTTIMKCCFRNRKYKLGLEIL 103
           ++ A R++++  G      H+             PN++ Y T++   + + ++    ++ 
Sbjct: 517 VQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLF 576

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           S M++ G   D F Y  +I     +G +  A      M+  GV+
Sbjct: 577 SYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVK 620


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 5/283 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P  + FN +L+ LCK+R+ + A  +F  ++   F P++ +Y IL++G  +   L    
Sbjct: 210 LQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLD 269

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ D G  P+A+TY  ++    + R+Y   +E+   M+          YCT+I   
Sbjct: 270 EVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGL 329

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
               RL EA  + E+    G   +  +YN ++  YC+  +++ AY ++DEM K G     
Sbjct: 330 GSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQT 389

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            T+ I++  L KA   K A R+     ++ G + ++  Y  +V     + ++D A+ V++
Sbjct: 390 RTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWD 449

Query: 245 SMEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            M+ K        +S+++++LC   +L  A K     L  G+R
Sbjct: 450 EMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIR 492



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 1/231 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ I++N  CK R  D A+ +F  ++ +  +P    Y  LI GL    RL  A   
Sbjct: 282 PDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQF 341

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +    SG  P A TY  ++    ++ +      I+  M++ G       Y  ++   +K
Sbjct: 342 FERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIK 401

Query: 128 IGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             R KEA    + M ++ G +  + +Y  ++ ++C E +++ A  + DEM+ +G     +
Sbjct: 402 ARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMH 461

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
             + LI+ LC    +  A  +   M  +G       ++ +   L  +GK D
Sbjct: 462 MFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQD 512



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 39/267 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF ++     + R    A+  F  ++K G  P L  +N L+  LCK+  +  A+ +  ++
Sbjct: 181 TFALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKM 240

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D    P+  +YT ++                          +G+G    +    ++ R 
Sbjct: 241 KDRKFRPDIKSYTILL--------------------------EGWGQEQNLLRLDEVYR- 273

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
                   +M  +G + D V+Y  LIN +CK  + +AA  L  +ME        + +  L
Sbjct: 274 --------EMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTL 325

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           I+GL     +  A    E     GF      YN +V    +  ++D A  + + M     
Sbjct: 326 INGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGV 385

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLL 274
              + TY  ++H+L KA+R   A ++ 
Sbjct: 386 GPQTRTYDIILHHLIKARRTKEAYRVF 412


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK+T+T LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 319 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D  TY+ +++  CK   +   SKLL    ++G
Sbjct: 379 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNG 411



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 119/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D  +Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   ++  Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 197 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K   +++  M  KG   D F Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 317 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 377 LKPDIGTYTMIINEFCKKGDVWKGSKL-LKEMQRNGHAPSVVTYNVLMN 424



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 101/194 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +      P+L+TYN LI GLCK G 
Sbjct: 232 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+  TYTT++  C +        E    M ++    D   Y  
Sbjct: 292 LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTA 351

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ DI +Y  +IN +CK+G +     LL EM++ G
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNG 411

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 412 HAPSVVTYNVLMNG 425



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 227 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-D 345

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378


>gi|222631493|gb|EEE63625.1| hypothetical protein OsJ_18442 [Oryza sativa Japonica Group]
          Length = 390

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 131/242 (54%), Gaps = 4/242 (1%)

Query: 39  HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98
           +G  P++VTY+ LI GLC AG++  A  +L  + + G  PNA TYT I+       +   
Sbjct: 4   NGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHE 63

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
              +L+ M   G+      Y  ++ A  K+G  +E    +E+    G   D+++Y++ ++
Sbjct: 64  AKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMD 123

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
             CK G+++ ++ L+D+M   G +  + T  IL+DG+C++     A+  LE   ++G+D+
Sbjct: 124 GLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDA 183

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           N+  YN ++ +L  + +    + +F  M  K    +S+T++ +VH+LCK  RL  A  LL
Sbjct: 184 NVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLL 243

Query: 275 LS 276
            S
Sbjct: 244 RS 245



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 4/172 (2%)

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           MV +GV  D+V+Y+TLI+  C  G++  A  +LD M ++G + + +T+T ++   C  G 
Sbjct: 1   MVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGR 60

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSS 256
           I  A+  L  M   GF  +   YN +V+ L K G  +    + E    K    D  TYSS
Sbjct: 61  IHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSS 120

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +  LCKA R+  +  L+   L +G++  +     ++DG+  S     AK++
Sbjct: 121 YMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRL 172



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 65/266 (24%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T++  ++GLCK    D +  +   +  +G  P  VT NIL+ G+C++     A+ 
Sbjct: 112 TPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKR 171

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+   + G   N + Y T+M+      ++   +++ + M +KG   + + +  V+ +  
Sbjct: 172 LLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLC 231

Query: 127 KIGRLKEATDYME--------------------------------QMVTDGVQLDIVSYN 154
           K+GRL +A   +                                 QM+  G+  + ++Y+
Sbjct: 232 KLGRLHKALFLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYS 291

Query: 155 TLINLYCKEGK----------------LEAAYL----------LLDEMEK-------QGF 181
            +I+  C+E K                  +A+L          +L ++         QGF
Sbjct: 292 LVIDCLCREEKFLVALCCFYQSLEDDFFPSAFLSIIRGLIVGGMLGQLHTLIGCVLGQGF 351

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLH 207
             + Y +  LI  LCK G  +   ++
Sbjct: 352 IIEVYIYQELIKALCKNGYCQSVEMY 377



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 5/159 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P + TFNI+++ LCK      AL + R  +   FV  ++TYN LI+ L  +G      
Sbjct: 216 IAPNSWTFNIVVHSLCKLGRLHKALFLLRSKE---FVATVITYNTLIRHLSISGEGNEVC 272

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++ + G APN ITY+ ++ C  R  K+ + L          +    F   ++I   
Sbjct: 273 LLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSAF--LSIIRGL 330

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           +  G L +    +  ++  G  +++  Y  LI   CK G
Sbjct: 331 IVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNG 369


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 9/311 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   +++ ++NG  K    D     +  +      P +VTYN +I  LCKA  +  
Sbjct: 6   GDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDK 65

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  SG  P+ +TY +I+     + + K  +  L  M+  G   D   Y +++ 
Sbjct: 66  AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 125

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ DI +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 126 YLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 185

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + Y  +IL+    K   ++ A L    M + G + N   Y  ++D L K G+++ A+  F
Sbjct: 186 NHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYF 245

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M  +    DS  Y+S++H+LC   +   A +L L  L  G+ +      +++D    S
Sbjct: 246 EQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIID----S 301

Query: 300 GCRREAKKIQS 310
            C +E + I+S
Sbjct: 302 HC-KEGRVIES 311



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 144/282 (51%), Gaps = 4/282 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++  LCK +  D A+ +   + K G +P+ +TYN ++ G C +G+ + A 
Sbjct: 43  ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 102

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     +I  +M ++G   D   Y T++  +
Sbjct: 103 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGY 162

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ L+  Y K+ K+E A L+  +M +QG   + 
Sbjct: 163 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 222

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +ID LCK+G ++ A L+ E M   G   +   YN ++  L    K + A  +F  
Sbjct: 223 VTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLE 282

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           M  +     +  ++S++ + CK  R+  + KL    ++ GV+
Sbjct: 283 MLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVK 324



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 2/247 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++G C +     A+   + ++  G  P++VTYN L+  LCK GR
Sbjct: 73  MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 132

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR I   +   G  P+  TY T+++             +L  M R G   + + +  
Sbjct: 133 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 192

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ A+ K  +++EA     +M   G+  + V+Y T+I++ CK G++E A L  ++M  +G
Sbjct: 193 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 252

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              D   +  LI  LC      K   L LE +++ G   +   +N I+D   K+G++  +
Sbjct: 253 LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR-GICLSTIFFNSIIDSHCKEGRVIES 311

Query: 240 INVFESM 246
           + +F+ M
Sbjct: 312 VKLFDLM 318



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 35/217 (16%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++ LCKN     A ++F  + K G  P++ TY  L++G    G L    
Sbjct: 113 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMH 172

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  +  +G  PN   ++ ++    +  K +  + + S M+++G   +   Y TVI   
Sbjct: 173 GLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVL 232

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI---------------------------- 157
            K GR+++A  Y EQM+ +G++ D + YN+LI                            
Sbjct: 233 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 292

Query: 158 -------NLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                  + +CKEG++  +  L D M + G + D  T
Sbjct: 293 IFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPDIIT 329



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 75/152 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    + A+ +F  +++ G  P  VTY  +I  LCK+GR
Sbjct: 178 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 237

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G  P++I Y +++       K++   E+   M  +G       + +
Sbjct: 238 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNS 297

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           +I +  K GR+ E+    + MV  GV+ DI++
Sbjct: 298 IIDSHCKEGRVIESVKLFDLMVRIGVKPDIIT 329



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
            ++ +Y+ +++   K+G +D   + +  M  K    +  TY+S++  LCKA+ +  A ++
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEV 69

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           L + +KSGV        ++V G   SG  +EA     K+R
Sbjct: 70  LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMR 109


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 120/241 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P   T N +LNGL K  YTD    ++  +++ G  P L T+NIL   LCK G      
Sbjct: 264 FVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVN 323

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+++ + G  P+ +TY T++    R  +      +   M R+G   D   Y  ++   
Sbjct: 324 KFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL 383

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR++EA     +MV  G+  DIV+YNTLI+ YCKEGK++ +  LL +M   G   D 
Sbjct: 384 CKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDS 443

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T  +L++G  K G    A   +  + + G   + + Y+ ++  L ++ +   A N+ E 
Sbjct: 444 FTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLER 503

Query: 246 M 246
           M
Sbjct: 504 M 504



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFNI+ + LCK+  T    +    +++ GF P++VTYN LI   C+ GRL  A 
Sbjct: 299 IAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAF 358

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++ K +   G  P+ ++YT +M    +  + +   ++   M  +G + D   Y T+I  +
Sbjct: 359 YLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGY 418

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+++E+   +  M+ +G+  D  +   L+  Y KEGK  +A  L+ E+++ G    +
Sbjct: 419 CKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQ 478

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
             ++ LI  LC+      A+  LE M++ G    LE YN ++
Sbjct: 479 DIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELI 520



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 141/332 (42%), Gaps = 33/332 (9%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI---LIKGLCKAGRLR 62
           L P T   N ++N +C N    N+       + +  +P L    I   L++  C++    
Sbjct: 104 LLPQTQNPNNIVNLICSNLKQHNSNLALLHTEVNALLPHLGAQEISRVLLR--CQSDSFT 161

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-------------- 108
              +      D G  P+   Y  I+     +R +   ++ L  +                
Sbjct: 162 ALSFFNWVKNDLGLRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVELVKDDLPGEDVFKN 221

Query: 109 -----KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
                +   +D   +  ++ A++++GR++E      +M+  G    +++ N L+N   K 
Sbjct: 222 LILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKL 281

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
              +  + + +EME+ G   + YT  IL   LCK G+       LE M + GFD ++  Y
Sbjct: 282 NYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTY 341

Query: 224 NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           N +++   + G++D A  +++ M     V D  +Y+++++ LCK  R+  A +L    + 
Sbjct: 342 NTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVH 401

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
            G+    S      + L H  C +E K  +S+
Sbjct: 402 RGL----SPDIVTYNTLIHGYC-KEGKMQESR 428



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 120/276 (43%), Gaps = 6/276 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L+P   T+N +++G CK      +  +   +  +G  P+  T  +L++G  K G+
Sbjct: 399 MVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGK 458

Query: 61  LRTARWILKELGDSGHAPNAITYT-TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
             +A  ++ EL   G + +   Y+  I+  C  NR +     +L  M + G+  +   Y 
Sbjct: 459 FLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFA-AKNLLERMSQDGHKXELEIYN 517

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I +F +   + EA     +MV   ++ ++ +Y  +J    +  +      L+ EM   
Sbjct: 518 ELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVAS 577

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D      L  G C+  +I  A   L +  K     + E++N ++      G I  +
Sbjct: 578 GXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAKGDIARS 637

Query: 240 INVFESM----EVKDSFTYSSMVHNLCKAKRLPSAS 271
           + + + M     + +  T   ++  L KA+R+ SAS
Sbjct: 638 LEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVDSAS 673



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 14/201 (6%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ ++  LC+      A  +   + + G   EL  YN LIK  C+   +  A  +  E+ 
Sbjct: 481 YSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMV 540

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-------GFGYCTVIAAF 125
           D    PN  TY  ++ C  R  +   G  ++  M   G   D        +GYC      
Sbjct: 541 DKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICRALFYGYC------ 594

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +   + +A   +     +    D  S+N LI +   +G +  +  + D M K G   + 
Sbjct: 595 -RENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNP 653

Query: 186 YTHTILIDGLCKAGNIKGARL 206
            T   +IDGL KA  +  A L
Sbjct: 654 LTCKYVIDGLWKARRVDSASL 674


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 110/214 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 165 LRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 224

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 225 ELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 284

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M  +G++ D ++Y TLI+  CKEG +E A+     M ++    D 
Sbjct: 285 CKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDD 344

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
             +T LI GLC+ G    A   L  M  +G   N
Sbjct: 345 VVYTALISGLCQEGRSVDAEKMLREMLSVGLKPN 378



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 31/271 (11%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI++   CK      A  +   + K G  P +V++N LI G  + G L     +   + 
Sbjct: 137 FNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMH 196

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 197 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVD 256

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G+L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 257 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLI 316

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252
           DG CK G+++ A  H + M                        I   I +       D  
Sbjct: 317 DGCCKEGDMETAFEHQKRM------------------------IQENIRL-------DDV 345

Query: 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            Y++++  LC+  R   A K+L   L  G++
Sbjct: 346 VYTALISGLCQEGRSVDAEKMLREMLSVGLK 376



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 142/301 (47%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F+ ++    ++ +  +A+  +R  ++H F   L T   +++ L K    +      KE+
Sbjct: 66  VFSGLITAYLESGFLRDAIECYRLTREHKFWVPLDTCRKVLEHLMKLKYFKLVWGFYKEI 125

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+  +   +  +M+   +    ++   +L+A+ + G       + T+I  ++++G L
Sbjct: 126 LECGYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDL 185

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            E       M   GVQ D+ +Y+ LIN  CKE K++ A  L DEM  +G   +  T T L
Sbjct: 186 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTL 245

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           IDG CK G +  A    + M       +L  YN ++  L K G++  A ++ + M ++  
Sbjct: 246 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGL 305

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TY++++   CK   + +A +     ++  +R+      A++ GL   G   +A+K
Sbjct: 306 KPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEK 365

Query: 308 I 308
           +
Sbjct: 366 M 366



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 9/219 (4%)

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           GY    + +  ++  F K G ++ A   +  +   G++  +VS+NTLIN Y + G L+  
Sbjct: 129 GYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEG 188

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           + L   M   G + D YT+++LI+GLCK   +  A    + M   G   N   +  ++D 
Sbjct: 189 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDG 248

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K+G++D A+ +++ M  +    D  TY+++++ LCK   L  A  L+      G++  
Sbjct: 249 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPD 308

Query: 286 KSAQKAVVDGL-----RHSGCRREAKKIQSKIRMAKISH 319
           K     ++DG        +    + + IQ  IR+  + +
Sbjct: 309 KITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVY 347


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 128/243 (52%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G +   + +FN++++G C+ R  DNA +    +++HGF P++ +Y   I+        R 
Sbjct: 259 GSIPLSSRSFNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRK 318

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              +L+E+ ++G  PNA+TYT++M    +  + +  LE+   MK  G   D   Y ++I 
Sbjct: 319 VDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIF 378

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GRLK+A D  E M   GV  D+V+YN++I+  C   + E A  LL EME    + 
Sbjct: 379 ILGKAGRLKDACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKP 438

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+  L+   CK   +K  +  L++M K     +L  Y+ +V+ L K GK++ A +  
Sbjct: 439 NVGTYHRLLKMCCKKKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFL 498

Query: 244 ESM 246
           E M
Sbjct: 499 EEM 501



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 124/296 (41%), Gaps = 46/296 (15%)

Query: 23  NRYTDN---ALRMFR---GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76
           NR++++   AL  F+    L  +   PEL  YN+++  L K     +   +++E+     
Sbjct: 135 NRFSNDWVPALGFFKWAKSLTGYRHSPEL--YNLMVDILGKCRSFDSMSELVEEMARLEG 192

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA-- 134
                T T +M+   R RK++  +E    M++ G   D      +I A VK   ++ A  
Sbjct: 193 YVTLETMTKVMRRLARARKHEDAIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHK 252

Query: 135 --------------------------TDY------MEQMVTDGVQLDIVSYNTLINLYCK 162
                                      D+      ME M   G + D+ SY   I  Y  
Sbjct: 253 VVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGH 312

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           E        +L+EM + G   +  T+T ++  L KAG ++ A    E M   G  ++   
Sbjct: 313 ERDFRKVDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPF 372

Query: 223 YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           Y+ ++  LGK G++  A +VFE M     V+D  TY+SM+   C   R  +A +LL
Sbjct: 373 YSSMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLL 428



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 7/187 (3%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  ++ M+  L K     +A  +F  + K G V ++VTYN +I   C   R  TA  +LK
Sbjct: 370 TPFYSSMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLK 429

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ D    PN  TY  ++K C + ++ K+   +L  M +   + D   Y  ++ A  K G
Sbjct: 430 EMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSG 489

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++++A  ++E+MV  G      +   L       G+LE+  +L +++  + +  D+++  
Sbjct: 490 KVEDAYSFLEEMVLRGFTPKPSTLKKLA------GELESKSMLEEKVRVEEW-MDRFSQN 542

Query: 190 ILIDGLC 196
           ++  GL 
Sbjct: 543 LIRPGLS 549


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 140/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 145 FNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 265 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 325 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    + G
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 127/256 (49%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 232

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A   +++M   G++ D ++Y TLI+  CKEG L++A+     M ++    D+
Sbjct: 293 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 412

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 413 MQ-RDGHVPSVVTYNV 427



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K    ++  M  KG   D   Y T
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 322

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKL-LKEMQRDGHVPSVVTYNVLMN 430



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 101/194 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +      P+L+TYN LI GLCK G 
Sbjct: 238 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 297

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+ ITYTT++  C +        E    M ++    D   Y  
Sbjct: 298 LKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTA 357

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+G +     LL EM++ G
Sbjct: 358 LISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 418 HVPSVVTYNVLMNG 431



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWG 172

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 232

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 292

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 293 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL-D 351

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 352 EVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 142/301 (47%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F+ ++    ++ +  +A+  +R  ++H F   + T   +++ L K    +      +E+
Sbjct: 74  VFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEI 133

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+  +   +  +M    ++   +L   +  A+ + G       Y T++  ++++G L
Sbjct: 134 LECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 193

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            E       M+  GVQ D+ +Y+ LIN  CKE K++ A  L DEM  +G   +  T T L
Sbjct: 194 DEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 253

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           IDG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M VK  
Sbjct: 254 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGL 313

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TY++++   CK   L SA +     ++  +R+ + A  A++ GL   G   +A+K
Sbjct: 314 KPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEK 373

Query: 308 I 308
           +
Sbjct: 374 M 374


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 143/315 (45%), Gaps = 10/315 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N++++  C+      A  +   + K G  P +V Y  LI GLC   +
Sbjct: 177 MVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESK 236

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + +++ DSG  PN  TY  +M    +    K  L +   M   G   +   +  
Sbjct: 237 LMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGI 296

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A  K+  L  A  +  QM   GV  ++V +N+LI+ Y K G    A  LL EMEK  
Sbjct: 297 LIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFK 356

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T++ILI   C+ G ++ A   L+ M K G  +N   YN ++D   K+G ++ A+
Sbjct: 357 ISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKAL 416

Query: 241 NVFESMEV----------KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
            +F++ +            D+  Y+ M+     AK +     L    +K G+   +   +
Sbjct: 417 EIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQ 476

Query: 291 AVVDGLRHSGCRREA 305
            V  G + +G  + A
Sbjct: 477 VVRRGYQDNGYLKSA 491



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 124/305 (40%), Gaps = 39/305 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P     N +LNGL K    D    ++  +      P +VTYN+L+   C+ G +  A+ +
Sbjct: 149 PAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSL 208

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+   G  P  + YTT++                             G C+       
Sbjct: 209 ISEMVKKGIEPTVVIYTTLIH----------------------------GLCSE------ 234

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +L EA     QM   GV  ++ +YN L++ YCK   ++ A  L   M   G + +  T
Sbjct: 235 -SKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVT 293

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             ILID LCK   +  AR     M K G   N+  +N ++D   K G    A ++   ME
Sbjct: 294 FGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEME 353

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D FTYS ++ N C+   +  A  +L    K GV        +++DG    G   
Sbjct: 354 KFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNME 413

Query: 304 EAKKI 308
           +A +I
Sbjct: 414 KALEI 418


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK+T+T LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    + G
Sbjct: 385 PDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDG 417



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGAN 232

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D  +Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 293 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKE 412

Query: 246 MEVKDSFTYSSMVHNL 261
           M  +D    S + +N+
Sbjct: 413 MH-RDGHAPSVVTYNV 427



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++      P+ ITY T++    +    K   +++  M  KG   D F Y T
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 322

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG++L L+ M++ G   ++  YN +++
Sbjct: 383 LKPDTGTYTMIINEFCKKGDVWKGSKL-LKEMHRDGHAPSVVTYNVLMN 430



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 100/194 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +     +P+L+TYN LI GLCK G 
Sbjct: 238 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 297

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+  TYTT++  C +        E    M ++    D   Y  
Sbjct: 298 LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTA 357

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+G +     LL EM + G
Sbjct: 358 LISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDG 417

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 418 HAPSVVTYNVLMNG 431



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++  A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGAN 232

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 293 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-D 351

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 133/246 (54%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N+++NG C+    D A  + + ++ +G  P +  Y+ L+ GLCK G+L  A+
Sbjct: 301 IVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAK 360

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+  SG  P+A+TYT+++    RN K    +E+L  MK  G   D   +  ++   
Sbjct: 361 GVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGL 420

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+ +EA D +E++   GV L+  SY  ++N   ++ +L+ A  LL  M ++GF+   
Sbjct: 421 CREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHY 480

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L+  LCKAG +  A + L  + ++GF   LE +  ++  + ++ K+ +   + + 
Sbjct: 481 ATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLICRERKLLYVFELLDE 540

Query: 246 MEVKDS 251
           + V ++
Sbjct: 541 LVVTNT 546



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 146/288 (50%), Gaps = 10/288 (3%)

Query: 5   DLT--PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRL 61
           DLT  P    FNI++   CKN   D+A  +   ++   F  P LVTY+ L+ GLC+ GR+
Sbjct: 226 DLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRV 285

Query: 62  RTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + A  + +E+    H  P+ +TY  ++    R  K      ++  MK  G   + + Y  
Sbjct: 286 KEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSA 345

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K+G+L++A   + ++   G++ D V+Y +LIN  C+ GK + A  LL+EM++ G
Sbjct: 346 LVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENG 405

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D  T  +L+ GLC+ G  + A   +E + + G   N  +Y  +++ L +  ++  A 
Sbjct: 406 CQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAK 465

Query: 241 NVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +   M ++  F     T + ++  LCKA  +  A+  L   ++ G +
Sbjct: 466 ELLGLM-LRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQ 512



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 130/261 (49%), Gaps = 7/261 (2%)

Query: 55  LCKAGRLRTAR-WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
           L  + R+  AR  +L    D    PN   +  ++K   +N       EI+  M+   +++
Sbjct: 207 LLDSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSY 266

Query: 114 DGF-GYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEAAYL 171
                Y T++    + GR+KEA D  E+MV+ D +  D ++YN LIN +C+ GK + A  
Sbjct: 267 PNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARN 326

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
           ++  M+  G   + Y ++ L+DGLCK G ++ A+  L  +   G   +   Y  +++ L 
Sbjct: 327 VIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLC 386

Query: 232 KDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
           ++GK D AI + E M+      DS T++ ++  LC+  +   A  ++    + GV + K 
Sbjct: 387 RNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKG 446

Query: 288 AQKAVVDGLRHSGCRREAKKI 308
           + + V++ L      + AK++
Sbjct: 447 SYRIVLNSLTQKCELKRAKEL 467



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 6/192 (3%)

Query: 127 KIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECD 184
           K G L  A + +E+M        ++V+Y+TL++  C+ G+++ A+ L +EM  +     D
Sbjct: 245 KNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPD 304

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ +LI+G C+ G    AR  +++M   G   N+  Y+ +VD L K GK++ A  V  
Sbjct: 305 PLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLA 364

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            ++      D+ TY+S+++ LC+  +   A +LL    ++G +        ++ GL   G
Sbjct: 365 EIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREG 424

Query: 301 CRREAKKIQSKI 312
              EA  +  K+
Sbjct: 425 KFEEALDMVEKL 436



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGLCKAGNIKGA-RL 206
           ++  +N L+  +CK G L++A+ +++EM    F   +  T++ L+DGLC+ G +K A  L
Sbjct: 232 NVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDL 291

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             E +++     +   YN +++   + GK D A NV + M+      + + YS++V  LC
Sbjct: 292 FEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLC 351

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           K  +L  A  +L     SG++       ++++ L  +G   EA ++  +++
Sbjct: 352 KVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMK 402


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 39/357 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T++ ++  L K R ++  + + + ++  G  P + T+ I I+ L +AG+
Sbjct: 218 MVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGK 277

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I + + D G  P+ +TYT ++       + +   E+   MK  G+  D   Y T
Sbjct: 278 IDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYIT 337

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   G L    ++  QM  DG   D+V++  L+++ CK    + A+   D M KQG
Sbjct: 338 LLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG 397

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T+  LI GL +AG I+ A   L+ M  +G       Y   +D  GK G+   A+
Sbjct: 398 ILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAV 457

Query: 241 NVFESMEVK---------------------------------------DSFTYSSMVHNL 261
             FE M+ K                                       DS TY+ M+   
Sbjct: 458 ETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCY 517

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            K  ++  A  LL   +++G         +++D L  +G   EA ++  +++  K+S
Sbjct: 518 SKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 135/272 (49%), Gaps = 4/272 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            ++P  A++N ++  L +  YT+ A  +F+ ++  G  P+  T+N+L+    K+G++    
Sbjct: 784  ISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELF 843

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + KE+      P+AITY  ++    ++      L+    +    +      Y  +I   
Sbjct: 844  ELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGL 903

Query: 126  VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             K+GRL+EA    E+M   G + +   +N LIN Y K G  E A  L   M  +G   D 
Sbjct: 904  AKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDL 963

Query: 186  YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             ++TIL+D LC AG +  A  +   +   G D +  AYN I++ LGK  +++ A+ ++  
Sbjct: 964  KSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNE 1023

Query: 246  ME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            M     V D +TY+S++ NL  A  +  A ++
Sbjct: 1024 MRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 140/306 (45%), Gaps = 4/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N +++ L ++ +   AL ++R +   G  P L TY+ L+  L K         +LKE+
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  PN  T+T  ++   R  K     EI   M  +G   D   Y  +I A    G+L
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQL 313

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A +   +M  +G + D V Y TL++ +   G L+       +ME  G+  D  T TIL
Sbjct: 314 ENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTIL 373

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           +D LCKA +   A    + M K G   NL  YN ++  L + G+I+ A+ + ++ME    
Sbjct: 374 VDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGV 433

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
              ++TY + +    K+     A +        G+     A  A +  L   G  REAK 
Sbjct: 434 QPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKT 493

Query: 308 IQSKIR 313
           + + +R
Sbjct: 494 MFNGLR 499



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 115/248 (46%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI     P   T+NI+++ L K+   D AL  F  L    F P   TY  LI GL K GR
Sbjct: 849  MISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGR 908

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L  A  + +E+ D G  PN   +  ++    +    +   ++   M  +G   D   Y  
Sbjct: 909  LEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI 968

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++      GR+ EA  Y  ++ + G+  D ++YN +IN   K  ++E A  L +EM  +G
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               D YT+  L+  L  AG ++ A+   E +   G + ++  YN ++         +HA 
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAY 1088

Query: 241  NVFESMEV 248
             V+++M V
Sbjct: 1089 TVYKNMMV 1096



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 125/287 (43%), Gaps = 39/287 (13%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D     +  ++  G++P++VT+ IL+  LCKA     A      +   G  PN  TY T+
Sbjct: 349 DTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK------------------- 127
           +    R  + +  L++L  M+  G     + Y T I  F K                   
Sbjct: 409 ICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGI 468

Query: 128 ----------------IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
                           +GRL+EA      +  +G+  D V+YN ++  Y K G+++ A  
Sbjct: 469 VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVN 528

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
           LL EM + G E D      LID L KAG +  A    + M  +     +  YN ++  LG
Sbjct: 529 LLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLG 588

Query: 232 KDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           K+G++  AI +FESM  K    ++ ++++++   CK   +  A K+ 
Sbjct: 589 KEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMF 635



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 128/268 (47%), Gaps = 3/268 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+   ++   K+  T  A+  F  ++  G VP +V  N  +  L + GRLR A+
Sbjct: 433 VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   L ++G AP+++TY  +MKC  +  +    + +LS M R G   D     ++I + 
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR+ EA    ++M    +   +V+YNTL++   KEG+++ A  L + M  +    + 
Sbjct: 553 YKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNT 612

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +   L+D  CK   ++ A      M  +    ++  YN ++  L K+ K++HA   F  
Sbjct: 613 ISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ 672

Query: 246 MEV---KDSFTYSSMVHNLCKAKRLPSA 270
           ++     D  T  +++  L K  ++  A
Sbjct: 673 LKKSMHPDHVTICTLLPGLVKCGQIGDA 700



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 130/286 (45%), Gaps = 4/286 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++K GFV    +YN LI  L ++G    A  + + +   G  P+  TY+ +M    + R 
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRD 242

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            ++ + +L  M+  G   + + +   I    + G++ EA +   +M  +G   D+V+Y  
Sbjct: 243 SEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTV 302

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+  C  G+LE A  L  +M+  G + D+  +  L+D     G++   +     M   G
Sbjct: 303 LIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADG 362

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
           +  ++  +  +VD L K    D A   F+ M     + +  TY++++  L +A R+  A 
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           KLL +    GV+         +D    SG   +A +   K++   I
Sbjct: 423 KLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGI 468



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 126/267 (47%), Gaps = 8/267 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P + T+N+M+    K    D A+ +   + ++G  P+++  N LI  L KAGR+  A 
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + D   +P  +TY T++    +  + +  +E+  +M  K  + +   + T++  F
Sbjct: 563 QMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCF 622

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   ++ A     +M     + D+++YNT+I    KE K+  A+    ++ K+    D 
Sbjct: 623 CKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL-KKSMHPDH 681

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            T   L+ GL K G I  A  +  ++M ++ F  N   +  ++     + ++D AI   E
Sbjct: 682 VTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAE 741

Query: 245 SMEV-----KDSFTYSSMVHNLCKAKR 266
            + +     +DSF    +V  LCK KR
Sbjct: 742 ELVLNGICREDSFLI-PLVRVLCKHKR 767



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 151/384 (39%), Gaps = 77/384 (20%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P     N +++ L K    D A +MF  ++     P +VTYN L+ GL K GR
Sbjct: 533 MIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGR 592

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A  + + +     +PN I++ T++ C  +N + +L L++ S M       D   Y T
Sbjct: 593 VQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNT 652

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL-EAAYLLLDEMEKQ 179
           VI   +K  ++  A  +  Q+    +  D V+  TL+    K G++ +A  +  D M + 
Sbjct: 653 VIYGLIKENKVNHAFWFFHQL-KKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQV 711

Query: 180 GF------------------ECDK---YTHTILIDGLCKAGN---------------IKG 203
            F                  E DK   +   ++++G+C+  +               +  
Sbjct: 712 RFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYA 771

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRL--------------------------------- 230
            ++  ++  K+G    L +YNC++  L                                 
Sbjct: 772 YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 231 --GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             GK GKI     +++ M  +    D+ TY+ ++ +L K+  L  A       + S  R 
Sbjct: 832 VHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRP 891

Query: 285 LKSAQKAVVDGLRHSGCRREAKKI 308
                  ++DGL   G   EA ++
Sbjct: 892 TPRTYGPLIDGLAKVGRLEEAMRL 915



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%)

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           TY TI K        +    +L+ M++ G+  + + Y  +I   ++ G   EA +   +M
Sbjct: 159 TYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRM 218

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
           V++G++  + +Y+ L+    K+   E   +LL EME  G   + YT TI I  L +AG I
Sbjct: 219 VSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKI 278

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             A      M+  G   +L  Y  ++D L   G++++A  +F  M+
Sbjct: 279 DEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMK 324



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 4/184 (2%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           +   M++K    D   Y T+  A    G L++ T  + +M   G  L+  SYN LI+L  
Sbjct: 144 VFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLI 203

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           + G    A  +   M  +G +    T++ L+  L K  + +   + L+ M  +G   N+ 
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSC 277
            +   +  LG+ GKID A  +F  M+ +    D  TY+ ++  LC A +L +A +L +  
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323

Query: 278 LKSG 281
             +G
Sbjct: 324 KANG 327



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 37/81 (45%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            + P   T+N ++  L      + A RM+  LQ  G  P++ TYN LI+G   +     A 
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAY 1088

Query: 66   WILKELGDSGHAPNAITYTTI 86
             + K +   G  PN  TY  +
Sbjct: 1089 TVYKNMMVDGCNPNIGTYAQL 1109


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 158/304 (51%), Gaps = 6/304 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I G +   +  +N +++G C+    D A+++   + + G VP+LVTYNIL+   C+ G 
Sbjct: 215 VIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGM 274

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +++ +  SG  P+  +Y  ++K  C  N   +  L ++  M+ KG   D   Y 
Sbjct: 275 VDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMC-DVVSYN 333

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           TVI AF K  R ++  +  E+M   G++ D+V++N LI+ + +EG       LLDEM K 
Sbjct: 334 TVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKM 393

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               D   +T ++D LCK G +  A      M + G + ++ +YN +++   K  ++  A
Sbjct: 394 RVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDA 453

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +++F+ M+ K    D  TY  +V  L + K++  A ++    ++ G  + +   + +V+ 
Sbjct: 454 MHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHLSETLVNA 513

Query: 296 LRHS 299
           ++ S
Sbjct: 514 IQSS 517



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 136/297 (45%), Gaps = 10/297 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D   C A    ++ GLC     D A  +  G+ K G     + YN LI G C+ GR+  A
Sbjct: 188 DYKACVA----LVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKA 243

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             I   +  +G  P+ +TY  ++  C         + ++  M+R G   D + Y  ++  
Sbjct: 244 MKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKG 303

Query: 125 FVKIGRLKEATDYM-EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           F K   +  A   M E+M T G+  D+VSYNT+I  +CK  +    Y L +EM  +G   
Sbjct: 304 FCKANMVDRAHLMMVERMQTKGM-CDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRP 362

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T  ILID   + G+    +  L+ M K+    +   Y  +VD L K+GK+D A +VF
Sbjct: 363 DMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVF 422

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             M       D  +Y+++++  CK  R+  A  L       G+   +   K +V GL
Sbjct: 423 RDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGL 479



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 138/302 (45%), Gaps = 10/302 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P    FN  LN LC+    + AL +F  +   G  P++V+Y I+I  LC A R   A 
Sbjct: 115 FVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAA 174

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + L D G +P+      ++       +  L  E++  + + G   +   Y  +I  F
Sbjct: 175 KVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGF 234

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++GR+ +A      M   G   D+V+YN L+N  C+EG ++ A  L++ ME+ G E D 
Sbjct: 235 CRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDL 294

Query: 186 YTHTILIDGLCKAGNIKGARLHL-EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           Y++  L+ G CKA  +  A L + E M   G   ++ +YN ++    K  +      +FE
Sbjct: 295 YSYNELLKGFCKANMVDRAHLMMVERMQTKGM-CDVVSYNTVITAFCKARRTRKGYELFE 353

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA--QKAVVDGLRH 298
            M  K    D  T++ ++    +        KLL    K  +R+L       AVVD L  
Sbjct: 354 EMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTK--MRVLPDCIFYTAVVDHLCK 411

Query: 299 SG 300
           +G
Sbjct: 412 NG 413



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 133/282 (47%), Gaps = 4/282 (1%)

Query: 40  GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           GFVP++  +N  +  LC+  RL TA  +   +   G  P+ ++YT I+      +++   
Sbjct: 114 GFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEA 173

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
            ++   +  KG + D      ++      GR+  A + +  ++  GV+++ + YN LI+ 
Sbjct: 174 AKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDG 233

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           +C+ G+++ A  +   M + G   D  T+ IL++  C+ G +  A   +E M + G + +
Sbjct: 234 FCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPD 293

Query: 220 LEAYNCIVDRLGKDGKIDHA-INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 275
           L +YN ++    K   +D A + + E M+ K   D  +Y++++   CKA+R     +L  
Sbjct: 294 LYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFE 353

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
                G+R        ++D     G     KK+  ++   ++
Sbjct: 354 EMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRV 395



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 7/254 (2%)

Query: 34  RGLQKHGFVPELVTYNILIKGLCKAGR---LRTARWILKELGDSGHAPNAITYTTIMKCC 90
           R +   GF     TY+  I  LC A     L     +L ++   G  P+   + T +   
Sbjct: 70  RHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLL 129

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            R  + +  LE+  +M  KG   D   Y  +I A     R  EA     +++  G+  D 
Sbjct: 130 CRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDY 189

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +   L+   C  G+++ AY L+  + K G + +   +  LIDG C+ G +  A     +
Sbjct: 190 KACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAF 249

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M++ G   +L  YN +++   ++G +D A+ + E+ME      D ++Y+ ++   CKA  
Sbjct: 250 MSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANM 309

Query: 267 LPSASKLLLSCLKS 280
           +  A  +++  +++
Sbjct: 310 VDRAHLMMVERMQT 323



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 8/193 (4%)

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA-YLLLD 174
             Y + I+  VK G + +A    +QM     ++  V YN  I +  +  +L  A +    
Sbjct: 11  LAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRR 70

Query: 175 EMEKQGFECDKYTHTILIDGLCKA-GNIKGARLH--LEYMNKIGFDSNLEAYNCIVDRLG 231
            +  +GF    +T++  I  LC A  NI    +H  L  M+ +GF  ++ A+N  ++ L 
Sbjct: 71  HVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLC 130

Query: 232 KDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
           +  +++ A+ +F SM  K    D  +Y+ ++  LC AKR   A+K+    +  G+     
Sbjct: 131 RQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYK 190

Query: 288 AQKAVVDGLRHSG 300
           A  A+V GL   G
Sbjct: 191 ACVALVVGLCSGG 203


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN++++ LCK      A ++   +   G VP  VTYN L+ GLC  G+L  A  +
Sbjct: 238 PNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSL 297

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++  +   PN +T+ T++       +   G  +L +++ +G+  + + Y ++I+   K
Sbjct: 298 LNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCK 357

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  +A +  ++MV  G   + + Y+ LI+  C+EGKL+ A   L EM+ +G+  + +T
Sbjct: 358 EGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFT 417

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+ G  +AG+   A L  + M       N   Y+ +++ L KDGK   A+ V++ M 
Sbjct: 418 YSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQML 477

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +    D   YSSM+H  C A  +    KL    L  G
Sbjct: 478 SRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQG 515



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 4/294 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T++ +++GLCK    D A+ +   +Q  G  P LV +N+LI  LCK G L  A  
Sbjct: 202 APDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAK 261

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           ++  +   G  PN +TY  ++       K +  + +L+ M       +   + T+I  FV
Sbjct: 262 LVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFV 321

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             GR  + T  +  +   G + +   Y++LI+  CKEGK   A  L  EM  +G   +  
Sbjct: 322 MQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTI 381

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            ++ LIDGLC+ G +  AR  L  M   G+  N   Y+ ++    + G    AI V++ M
Sbjct: 382 VYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEM 441

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                + +   YS +++ LCK  +   A  +    L  G+++   A  +++ G 
Sbjct: 442 ANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGF 495



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 129/264 (48%), Gaps = 4/264 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   TFN+++  +C+    D A+ +FR +      P+  TY+ L+ GLCK  R+  A
Sbjct: 165 NIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEA 224

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+   G  PN + +  ++    +        +++  M  KG   +   Y  ++  
Sbjct: 225 VSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHG 284

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G+L++A   + QMV++    + V++ TLIN +  +G+      +L  +E +G   +
Sbjct: 285 LCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGN 344

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           +Y ++ LI GLCK G    A    + M   G   N   Y+ ++D L ++GK+D A     
Sbjct: 345 EYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLS 404

Query: 245 SMEVK----DSFTYSSMVHNLCKA 264
            M+ K    +SFTYSS++    +A
Sbjct: 405 EMKNKGYLPNSFTYSSLMRGYFEA 428



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 110/248 (44%), Gaps = 2/248 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TF  ++NG        +  R+   L+  G       Y+ LI GLCK G+
Sbjct: 301 MVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGK 360

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + KE+   G  PN I Y+ ++    R  K       LS MK KGY  + F Y +
Sbjct: 361 FNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSS 420

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  + + G   +A    ++M  +    + V Y+ LIN  CK+GK   A ++  +M  +G
Sbjct: 421 LMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRG 480

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            + D   ++ +I G C A  + +G +L  + +        ++  YN +++       I  
Sbjct: 481 IKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFR 540

Query: 239 AINVFESM 246
           AI++   M
Sbjct: 541 AIDILNIM 548



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 131/300 (43%), Gaps = 55/300 (18%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            ++ +++GLCK    + A+ +++ +   G  P  + Y+ LI GLC+ G+L  AR  L E+
Sbjct: 347 VYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEM 406

Query: 72  GDSGHAPNAITYTTIMKCCF-----------------------------------RNRKY 96
            + G+ PN+ TY+++M+  F                                   ++ K+
Sbjct: 407 KNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKF 466

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYN 154
              L +   M  +G   D   Y ++I  F     +++      QM+  G  VQ D+++YN
Sbjct: 467 MEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYN 526

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
            L+N +C +  +  A  +L+ M  QG + D  T  I +  L +  N+   +   E++++ 
Sbjct: 527 ILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRE--NMNPPQDGREFLDE- 583

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
                      +V RL K  +   A  + E M  K     + T++ +V  +CK K +  A
Sbjct: 584 -----------LVVRLVKRQRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNVRKA 632



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 4/240 (1%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           PNA+T+  ++K   R       +E+   +  +    D + Y T++    K  R+ EA   
Sbjct: 168 PNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSL 227

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           +++M  +G   ++V++N LI+  CK+G L  A  L+D M  +G   ++ T+  L+ GLC 
Sbjct: 228 LDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCL 287

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
            G ++ A   L  M       N   +  +++     G+      V  S+E +    + + 
Sbjct: 288 KGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYV 347

Query: 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           YSS++  LCK  +   A +L    +  G         A++DGL   G   EA+   S+++
Sbjct: 348 YSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMK 407


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 140/274 (51%), Gaps = 6/274 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++++++G  K   T+ A  ++  ++     P   T NI+I GLCKAGR   ++
Sbjct: 499 LKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQ 558

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK+L   G  P  +TY  I+    +       L + + M + G + + F Y  +I  F
Sbjct: 559 DRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGF 618

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   +  A   M++M   G++LD+  Y  LI+ +C++G +  A  LL E+++ G   +K
Sbjct: 619 CKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNK 678

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             ++ +I G  K  N++ A  LH   +N+ G   +L+ Y  ++  L K+GK+  A  ++ 
Sbjct: 679 VVYSSMISGFRKLQNMEAALHLHKRMINE-GIPCDLQIYTTLISGLLKEGKLLFASELYA 737

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            M  K    D  TYS ++H LC   +L +A K+L
Sbjct: 738 EMLAKGIMPDLITYSVLIHGLCNKGQLENAQKIL 771



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 146/296 (49%), Gaps = 6/296 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T NI++NGLCK   T  +    + L + GF+P  +TYN +I G  K G + +A
Sbjct: 533 NIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSA 592

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  E+   G +PN  TYT ++    ++    L L+++  MK KG   D   YC +I  
Sbjct: 593 LAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDG 652

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F + G +  A+  + ++   G+  + V Y+++I+ + K   +EAA  L   M  +G  CD
Sbjct: 653 FCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCD 712

Query: 185 KYTHTILIDGLCKAGNIK-GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
              +T LI GL K G +   + L+ E + K G   +L  Y+ ++  L   G++++A  + 
Sbjct: 713 LQIYTTLISGLLKEGKLLFASELYAEMLAK-GIMPDLITYSVLIHGLCNKGQLENAQKIL 771

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           E M+ K      F Y++++    K   L  A +L    L  G+    +    +V+G
Sbjct: 772 EDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNG 827



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 147/315 (46%), Gaps = 5/315 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ +++   CKN   D A  ++  ++     P +   N LI+G  KA     A  +
Sbjct: 362 PNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKL 421

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E    G A N  TY +++    +  K      I   M RKG       Y  +I    +
Sbjct: 422 FDEAVACGIA-NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQ 480

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +  A     +M+  G++ ++++Y+ L++ Y K+G  E A+ L D M  +      +T
Sbjct: 481 QGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFT 540

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
             I+I+GLCKAG    ++  L+ + + GF      YNCI+D   K+G ++ A+ V+  M 
Sbjct: 541 CNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMC 600

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 + FTY+++++  CK+  +  A K++      G+ +  +   A++DG    G   
Sbjct: 601 KIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMV 660

Query: 304 EAKKIQSKIRMAKIS 318
            A ++ S+++   +S
Sbjct: 661 NASQLLSELQEVGLS 675



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 151/336 (44%), Gaps = 39/336 (11%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +L+ LCK      A  ++  + + G  P +V+YN +I G C+ G + +A  +  E+
Sbjct: 435 TYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEM 494

Query: 72  GDSGHAPNAITYTTIMKCCFR--NRKYKLGL----------------------------- 100
            + G  PN ITY+ +M   F+  + +Y  GL                             
Sbjct: 495 LEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRT 554

Query: 101 ----EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
               + L  + ++G+      Y  +I  FVK G +  A     +M   GV  ++ +Y  L
Sbjct: 555 SESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNL 614

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           IN +CK   ++ A  ++DEM+ +G E D   +  LIDG C+ G++  A   L  + ++G 
Sbjct: 615 INGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGL 674

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK 272
             N   Y+ ++    K   ++ A+++ + M  +    D   Y++++  L K  +L  AS+
Sbjct: 675 SPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASE 734

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           L    L  G+         ++ GL + G    A+KI
Sbjct: 735 LYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKI 770



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 3/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  D+ PC    NI L+ L KN     A  ++  +   G   +  T +++I+   + G+
Sbjct: 180 LIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGK 239

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A    +E  + G   +A  Y+ +++   +       L +L  M+ KG+      +  
Sbjct: 240 LEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTR 299

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI   +K G++ EA     +M++ G  +++V   TL+  YCK+G L++A  L D+M + G
Sbjct: 300 VIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENG 359

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+ ++I+  CK GN+  A      M        +   N ++    K    + A 
Sbjct: 360 ICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEAS 419

Query: 241 NVFESM---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +F+      + + FTY+S++  LCK  ++  A  +    ++ GVR
Sbjct: 420 KLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVR 465



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 35/231 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+  ++NG CK+   D AL++   ++  G   ++  Y  LI G C+ G +  A 
Sbjct: 604 VSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNAS 663

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L EL + G +PN + Y++++    + +  +  L +   M  +G   D   Y T+I+  
Sbjct: 664 QLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGL 723

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSY-------------------------------- 153
           +K G+L  A++   +M+  G+  D+++Y                                
Sbjct: 724 LKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTV 783

Query: 154 ---NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
              NTLI  + KEG L+ A+ L +EM  +G   D  T+ IL++G  K GN+
Sbjct: 784 FIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 118/282 (41%), Gaps = 4/282 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D    +  FN +LN   K +  ++A+  F  L +   VP L   NI +  L K   +R A
Sbjct: 149 DFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREA 208

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R +  ++   G   +  T + +++   R  K +         K KG   D   Y  VI A
Sbjct: 209 RDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEA 268

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K      A   + +M   G     V +  +I +  K+GK+  A  +  EM   G   +
Sbjct: 269 VCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMN 328

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
               T L+ G CK G++  A    + MN+ G   N   Y  I++   K+G +D A  ++ 
Sbjct: 329 VVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYN 388

Query: 245 SMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            M+ KD     F  +S++    KA+    ASKL    +  G+
Sbjct: 389 QMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI 430



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++++++GLC     +NA ++   + +    P +  YN LI G  K G 
Sbjct: 739 MLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGN 798

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM 87
           L+ A  +  E+ D G  P+  TY  ++
Sbjct: 799 LQEAFRLHNEMLDKGLVPDDTTYDILV 825


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 137/271 (50%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLC   +   AL     +   GF  + V+Y  LI GLCK GR+  A  +
Sbjct: 138 PNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQL 197

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK +      PNA+ Y  I+    + +      ++ S M  K  + D F   ++I  F  
Sbjct: 198 LKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCI 257

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LKEA   + +M+ + +   + +++ L++ +CKEGK++ A ++L    K+    D  T
Sbjct: 258 MGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVT 317

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG C    I  A+   + M   G  +N+++Y  +++ L K   +D A+N+FE M 
Sbjct: 318 YNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMR 377

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
               + +  TY+S++  L K  ++    KL+
Sbjct: 378 CRKIIPNVVTYNSLIDGLGKLGKISCVLKLV 408



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 99/184 (53%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++  M+NGLCK +  D A+ +F  ++    +P +VTYN LI GL K G++     ++ E+
Sbjct: 352 SYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEM 411

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  PN ITY +I+    +N      + +L+ +K +G   D + Y  +I    + G+L
Sbjct: 412 HDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKL 471

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A    E ++  G  LD+ +Y  +I  +C +G  +AA  LL +ME  G   +  T+ I+
Sbjct: 472 EDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIV 531

Query: 192 IDGL 195
           I  L
Sbjct: 532 ILSL 535



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 145/312 (46%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N++++ +CK +  ++A  ++  +      P+  T N LI G C  G+L+ A 
Sbjct: 206 VQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAV 265

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++      P   T++ ++    +  K K    +L    +K    D   Y +++  +
Sbjct: 266 GLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGY 325

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +  + +A D  + M + GV  ++ SY T+IN  CK   ++ A  L +EM  +    + 
Sbjct: 326 CLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNV 385

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LIDGL K G I      ++ M+  G   N+  YN I+D L K+  +D AI +  +
Sbjct: 386 VTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTN 445

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++ +    D +TY+ ++  LC++ +L  A K+    L  G  +       ++ G    G 
Sbjct: 446 LKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGL 505

Query: 302 RREAKKIQSKIR 313
              A  + SK+ 
Sbjct: 506 FDAALALLSKME 517



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 136/286 (47%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++ P   TF+I+++  CK      A  M     K   + ++VTYN L+ G C    
Sbjct: 271 MILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKE 330

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ I   +   G   N  +YTT++    + +     + +   M+ +    +   Y +
Sbjct: 331 INKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNS 390

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+G++      +++M   G   +I++YN++++  CK   ++ A  LL  ++ QG
Sbjct: 391 LIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQG 450

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D YT+T+LI GLC++G ++ A+   E +   G++ ++  Y  ++      G  D A+
Sbjct: 451 IRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAAL 510

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +   ME    + ++ TY  ++ +L +      A KLL   +  G+
Sbjct: 511 ALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGL 556



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 45/336 (13%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    FN +L+ L K ++   AL + + ++ +G V +  T+NILI    + G    +  
Sbjct: 67  TPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFS 126

Query: 67  ILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           +  ++   G  PNAIT+ T++K  C +   ++  L     +  +G+  D   Y T+I   
Sbjct: 127 VFGKILKKGFDPNAITFNTLIKGLCLKGHIHQ-ALNFHDKVVAQGFHLDQVSYGTLINGL 185

Query: 126 VKIGRL-----------------------------------KEATDYMEQMVTDGVQLDI 150
            K+GR+                                    +A D   QMV   +  D 
Sbjct: 186 CKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDD 245

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            + N+LI  +C  G+L+ A  LL +M  +      YT +IL+D  CK G +K A++ L  
Sbjct: 246 FTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGV 305

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
             K     ++  YN ++D      +I+ A ++F+SM     + +  +Y++M++ LCK K 
Sbjct: 306 TMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKM 365

Query: 267 LPSASKLL--LSCLKSGVRILKSAQKAVVDGLRHSG 300
           +  A  L   + C K    ++     +++DGL   G
Sbjct: 366 VDEAVNLFEEMRCRKIIPNVV--TYNSLIDGLGKLG 399



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 132/280 (47%), Gaps = 5/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T N ++ G C       A+ +   +      P + T++IL+   CK G+
Sbjct: 236 MVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGK 295

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A+ +L          + +TY ++M      ++     +I  +M  +G   +   Y T
Sbjct: 296 VKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTT 355

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    KI  + EA +  E+M    +  ++V+YN+LI+   K GK+     L+DEM  +G
Sbjct: 356 MINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRG 415

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  ++D LCK  ++  A   L  +   G   ++  Y  ++  L + GK++ A 
Sbjct: 416 QPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQ 475

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLS 276
            VFE + VK    D +TY+ M+   C  K L  A+  LLS
Sbjct: 476 KVFEDLLVKGYNLDVYTYTVMIQGFC-VKGLFDAALALLS 514



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 132/276 (47%), Gaps = 9/276 (3%)

Query: 27  DNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           +N +  F  L  H    P ++ +N ++  L KA    TA  + +++  +G   +  T+  
Sbjct: 51  NNLISSFNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNI 110

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++ C  +     L   +   + +KG+  +   + T+I      G + +A ++ +++V  G
Sbjct: 111 LINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQG 170

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA- 204
             LD VSY TLIN  CK G++ AA  LL  ++ +  + +   + ++ID +CKA  +  A 
Sbjct: 171 FHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAF 230

Query: 205 ----RLHLEYMNKIGFDSNLEAYN-CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVH 259
               ++  + ++   F  N   Y  CI+ +L +   + H + + E++  +  +T+S +V 
Sbjct: 231 DLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKM-ILENINPR-MYTFSILVD 288

Query: 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             CK  ++  A  +L   +K  + +      +++DG
Sbjct: 289 AFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDG 324


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 2/264 (0%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           + G++ P T  +N +L G  K     NA ++   + + G  P+  TY++L+    +AGR 
Sbjct: 284 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRW 343

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCT 120
            +AR +LKE+   G  P++  ++ I+   FR+R +++    +L  M   G   D   Y  
Sbjct: 344 ESARILLKEMEADGVKPSSYVFSRIL-AGFRDRGEWQKAFAVLREMHASGVRPDRHFYNV 402

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K   L  A D  ++M  +G++ D+V++NTLI+ +CK G+ + A  L DEM +  
Sbjct: 403 MIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESN 462

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ I+I+ L +    +G    L  M + G   N+  Y  +VD  G+ G+   A+
Sbjct: 463 CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAV 522

Query: 241 NVFESMEVKDSFTYSSMVHNLCKA 264
           +  E+M+        +M H L  A
Sbjct: 523 DCIEAMKADGLKPSPTMYHALVNA 546



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 15/280 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P    +N+M++   K     +A+  F  +++ G  P++VT+N LI   CK GR
Sbjct: 388 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 447

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE-ILSAMKRKGYTFDGFGYC 119
              A  +  E+ +S       TY  ++      ++++ G+E +L+ MK +G   +   Y 
Sbjct: 448 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWE-GVEAMLAEMKEQGLVPNIITYT 506

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  + + GR KEA D +E M  DG++     Y+ L+N Y + G  + A  ++  M   
Sbjct: 507 TLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRAD 566

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E        LI+   +   I  A   L++M + G   ++  Y  ++  L +       
Sbjct: 567 GLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIR------- 619

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           +  FE + V     Y  M+ + C   R   A  +L S L+
Sbjct: 620 VEQFEKVPV----IYEEMITSGCAPDR--KARAMLRSALR 653



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 123/280 (43%), Gaps = 43/280 (15%)

Query: 30  LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA---RWILKELGDSGHAPNAITYTTI 86
           LR+   L++H F+P+L +Y+ L+  L        A     +L +L +S   P+A  ++ +
Sbjct: 168 LRLLGLLREHSFLPDLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSDL 227

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYT-------------------------FDGF----- 116
           +    R R     LE+L++ +  G T                         F  F     
Sbjct: 228 ISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGE 287

Query: 117 ------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
                  Y  ++  +VKIG LK A   +++M   GV  D  +Y+ L++ Y + G+ E+A 
Sbjct: 288 IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESAR 347

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
           +LL EME  G +   Y  + ++ G    G  + A   L  M+  G   +   YN ++D  
Sbjct: 348 ILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTF 407

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           GK   + HA++ F+ M  +    D  T+++++   CK  R
Sbjct: 408 GKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 447



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++ D   ++ LI+ + +    +AA  LL   +  G        T LI  L  A  +  A 
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276

Query: 206 -LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
            L LE+           AYN ++    K G + +A  V + M       D  TYS +V  
Sbjct: 277 ALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDA 336

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             +A R  SA  LL      GV+        ++ G R  G
Sbjct: 337 YTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 376


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 149/341 (43%), Gaps = 39/341 (11%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+N ++   C+    + A  +   +   G  P L TYN +I GLCK GR   A+ IL E
Sbjct: 154 VTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIE 213

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + + G +P+  TY T++    R   +    EI   M R+G   D   + ++IA F +   
Sbjct: 214 MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRH 273

Query: 131 LKEATDYM-----------------------------------EQMVTDGVQLDIVSYNT 155
           L +A  Y                                    ++M+  G  LD+++YNT
Sbjct: 274 LDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNT 333

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           ++N  CKE  L  A  L DEM ++G   D YT T LI G C+ GN+  A      M +  
Sbjct: 334 ILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN 393

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAKRLPSAS 271
              ++ AYN ++D   K G+++ A  +++ M  +  F    TY  +++  C    +  A 
Sbjct: 394 IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAF 453

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +L    ++ G++        V+ G   SG   +A +   ++
Sbjct: 454 RLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRM 494



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N LCK+   D+       ++ +G   ++VTYN LI   C+ G L  A  I+  +
Sbjct: 120 TLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSM 179

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  P+  TY  I+    +  +Y     IL  M   G + D   Y T++    +    
Sbjct: 180 ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNF 239

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA +   +M+  GV  D+VS+++LI ++ +   L+ A +   +M+K G   D   +T+L
Sbjct: 240 SEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVL 299

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           + G C+ GN+  A    + M + G   ++ AYN I++ L K+  +  A  +F+ M     
Sbjct: 300 MHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGA 359

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + D +T+++++H  C+   +  A  L  +  +  ++    A   ++DG    G   +A +
Sbjct: 360 LPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASE 419

Query: 308 IQSKIRMAKI 317
           +   +   KI
Sbjct: 420 LWDGMISRKI 429



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 145/294 (49%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + ++++G C+N     AL++   + + G V +++ YN ++ GLCK   L  A 
Sbjct: 289 LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDAD 348

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  P+  T+TT++    ++      L +   M ++    D   Y T+I  F
Sbjct: 349 KLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGF 408

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +++A++  + M++  +  + ++Y  LIN YC  G +  A+ L D M ++G +   
Sbjct: 409 CKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTL 468

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   +I G C++G+   A   L  M   G   +  +YN +++   ++  +D A      
Sbjct: 469 VTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINK 528

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           ME    + D  TY+ +++  C+  R+  A  +L   ++ G+   +S   A+++G
Sbjct: 529 MEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALING 582



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 114/239 (47%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  +++G C++     AL +F  + +    P++V YN LI G CK G +  A  +
Sbjct: 361 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 420

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +      PN ITY  ++              +   M  KG         TVI  + +
Sbjct: 421 WDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCR 480

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G   +A +++ +M+  GV  D +SYNTLIN + +E  ++ A+L +++MEK+G   D  T
Sbjct: 481 SGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIIT 540

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           + ++++G C+ G ++ A L L  M + G + +   Y  +++       ++ A    + M
Sbjct: 541 YNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEM 599



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 2/213 (0%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P    +N +++G CK    + A  ++ G+      P  +TY ILI   C  G +  A
Sbjct: 393 NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEA 452

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +   + + G  P  +T  T++K   R+       E L  M  KG   D   Y T+I  
Sbjct: 453 FRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLING 512

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           FV+   + +A  ++ +M  +G+  DI++YN ++N +C++G+++ A L+L +M ++G   D
Sbjct: 513 FVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPD 572

Query: 185 KYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGF 216
           + T+T LI+G     N+  A R H E + + GF
Sbjct: 573 RSTYTALINGHVTQDNLNEAFRFHDEMLQR-GF 604



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 136/299 (45%), Gaps = 4/299 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +CG+       F++++    + R        FR L+  G++  +   N L+ GL K   +
Sbjct: 40  MCGNCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWV 99

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  + +E+  SG   N  T   ++    ++ K+      LS M+  G   D   Y T+
Sbjct: 100 ELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTL 159

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I A+ + G L+EA + M  M   G++  + +YN +IN  CK+G+   A  +L EM   G 
Sbjct: 160 IGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGL 219

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D  T+  L+   C+  N   A+     M + G   +L +++ ++    ++  +D A+ 
Sbjct: 220 SPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALV 279

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            F  M+    V D+  Y+ ++H  C+   +  A K+    L+ G  +   A   +++GL
Sbjct: 280 YFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGL 338



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 39/330 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++NGLCK      A  +   +   G  P+  TYN L+   C+      A+
Sbjct: 184 LKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAK 243

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I  E+   G  P+ +++++++    RNR     L     MK+ G   D   Y  ++  +
Sbjct: 244 EIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY 303

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + EA    ++M+  G  LD+++YNT++N  CKE  L  A  L DEM ++G   D 
Sbjct: 304 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 363

Query: 186 YTHTILI-----------------------------------DGLCKAGNIKGARLHLEY 210
           YT T LI                                   DG CK G ++ A    + 
Sbjct: 364 YTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDG 423

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDSF-TYSSMVHNLCKAKR 266
           M       N   Y  +++     G +  A  +++ M    +K +  T ++++   C++  
Sbjct: 424 MISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGD 483

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              A + L   +  GV     +   +++G 
Sbjct: 484 SSKADEFLGRMIAKGVAPDHISYNTLINGF 513



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 90/184 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+ I++N  C   +   A R++  + + G  P LVT N +IKG C++G 
Sbjct: 424 MISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGD 483

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A   L  +   G AP+ I+Y T++    R          ++ M+++G   D   Y  
Sbjct: 484 SSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNV 543

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+  F + GR++EA   + +M+  G+  D  +Y  LIN +  +  L  A+   DEM ++G
Sbjct: 544 VMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRG 603

Query: 181 FECD 184
           F  D
Sbjct: 604 FAPD 607


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 147/316 (46%), Gaps = 35/316 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFN ++ G C+    D A  +F  +   GF  ++V+Y  LI+G C+ GR
Sbjct: 37  MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGR 96

Query: 61  LRTA-------------------------------RWILKELGDSGHAPNAITYTTIMKC 89
           +  A                                 +L+ + + G  P+   Y  ++  
Sbjct: 97  IDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDF 156

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
               RK K   E+L  M  KG          VI A+ K GR+ +A   +E M   G + +
Sbjct: 157 RCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPN 216

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           + +YN L+  +C EGK+  A  LL++M   G   D  T+ +LI G C  G+I+ A   L 
Sbjct: 217 VWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLR 276

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            M   G  ++   YN +++ L KDG+ D A ++F+S+E +    ++ T++S+++ LCK+ 
Sbjct: 277 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSG 336

Query: 266 RLPSASKLLLSCLKSG 281
           ++  A K L   + +G
Sbjct: 337 KVDIAWKFLEKMVSAG 352



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 4/262 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +  ++ GLCK    +  L M R +++ G+ P    Y  ++   C   + + A  +
Sbjct: 110 PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEM 169

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+ + G AP  +T T ++    +  +    L +L  MK +G   + + Y  ++  F  
Sbjct: 170 LQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCN 229

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++ +A   + +M   GV  D V+YN LI   C +G +E+A+ LL  ME  G   D+YT
Sbjct: 230 EGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYT 289

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI+ LCK G    A    + +   G   N   +N +++ L K GK+D A    E M 
Sbjct: 290 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMV 349

Query: 248 ----VKDSFTYSSMVHNLCKAK 265
                 D++TYSS + +LCK K
Sbjct: 350 SAGCTPDTYTYSSFIEHLCKMK 371



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 144/297 (48%), Gaps = 10/297 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L PC  T   ++N  CK     +ALR+   ++  G  P + TYN L++G C  G++  A 
Sbjct: 178 LAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAM 237

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G  P+A+TY  +++    +   +    +L  M+  G   D + Y  +I A 
Sbjct: 238 ALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 297

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR  +A    + + T G++ + V++N+LIN  CK GK++ A+  L++M   G   D 
Sbjct: 298 CKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDT 357

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           YT++  I+ LCK   +KG++  L ++ ++       +   Y  ++ +L K+         
Sbjct: 358 YTYSSFIEHLCK---MKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART 414

Query: 243 FESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +  M       D  TY++ +   C   RL  A  +L+   K+GV +   A   ++DG
Sbjct: 415 WGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDG 471



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 127/268 (47%), Gaps = 5/268 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +CG + P   T+N+++ G C + + ++A R+ R ++  G + +  TYN LI  LCK GR 
Sbjct: 245 VCG-VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 303

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  +   L   G  PNA+T+ +++    ++ K  +  + L  M   G T D + Y + 
Sbjct: 304 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSF 363

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I    K+   +E   ++ +M+   V+   V+Y  +I+   KE           EM   G 
Sbjct: 364 IEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGC 423

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D  T+T  +   C  G +  A   L  M+K G   +  AYN ++D     G+ DHA++
Sbjct: 424 NPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVS 483

Query: 242 VFESM----EVKDSFTYSSMVHNLCKAK 265
           + + M     V + FTY  ++ +L + +
Sbjct: 484 ILKQMTSVASVPNQFTYFILLRHLVRMR 511



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 151/354 (42%), Gaps = 58/354 (16%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++N LCK+  TD A  +F  L+  G  P  VT+N LI GLCK+G++  A   L+++
Sbjct: 289 TYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKM 348

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  P+  TY++ ++   + +  + GL  +  M +K        Y  VI   +K    
Sbjct: 349 VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNY 408

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
                   +MV+ G   D+V+Y T +  YC EG+L  A  +L EM K G   D   +  L
Sbjct: 409 GLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTL 468

Query: 192 IDG-----------------------------------------------LCKAGNIKGA 204
           +DG                                               L  AG  K  
Sbjct: 469 MDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI 528

Query: 205 RLH-----LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT-----Y 254
            L       + M K  F  N   Y+ I++   +DG+ + A ++   M+ +DS +     Y
Sbjct: 529 ELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMK-EDSISLNEDIY 587

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +++V   CK+KR   A  L+ S ++ G      + + ++ GL   G   +AK+I
Sbjct: 588 TALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEI 641



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 146/324 (45%), Gaps = 35/324 (10%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++  LC+     +ALR    + + G+ P+  T+N LI G C+  ++  AR +  ++
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 72  GDSGHAPNAITYTTIMK-CCFRNR------------------------------KYKLGL 100
              G A + ++Y  +++  C   R                              + + GL
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGL 132

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
            +L  MK  G+      Y  V+       + KEA + +++M   G+   +V+   +IN Y
Sbjct: 133 LMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAY 192

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           CKEG++  A  +L+ M+ +G + + +T+  L+ G C  G +  A   L  M   G + + 
Sbjct: 193 CKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDA 252

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
             YN ++     DG I+ A  +   ME    + D +TY+++++ LCK  R   A  L  S
Sbjct: 253 VTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDS 312

Query: 277 CLKSGVRILKSAQKAVVDGLRHSG 300
               G++       ++++GL  SG
Sbjct: 313 LETRGIKPNAVTFNSLINGLCKSG 336



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 4/262 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T  +  +++  C  R    A  M + + + G  P +VT   +I   CK GR+  A  +
Sbjct: 145 PSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 204

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +   G  PN  TY  +++      K    + +L+ M+  G   D   Y  +I     
Sbjct: 205 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCI 264

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++ A   +  M  DG+  D  +YN LIN  CK+G+ + A  L D +E +G + +  T
Sbjct: 265 DGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVT 324

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LI+GLCK+G +  A   LE M   G   +   Y+  ++ L K       ++    M 
Sbjct: 325 FNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML 384

Query: 248 VKD----SFTYSSMVHNLCKAK 265
            KD    +  Y+ ++H L K +
Sbjct: 385 QKDVKPSTVNYTIVIHKLLKER 406



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 113/241 (46%), Gaps = 8/241 (3%)

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           TY  +++   R       L  LS M R G+  D + + ++I  + +  ++  A D  ++M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
              G   D+VSY  LI  +C+ G+++ A  L  EM++     D + +  L+ GLCKAG  
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQP----DMHMYAALVKGLCKAGRG 128

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD----SFTYSSM 257
           +   L L  M ++G+  +  AY  +VD    + K   A  + + M  K       T +++
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           ++  CK  R+  A ++L      G +       A+V G  + G   +A  + +K+R+  +
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGV 248

Query: 318 S 318
           +
Sbjct: 249 N 249



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 115/267 (43%), Gaps = 17/267 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+ P T  + I+++ L K R      R +  +   G  P++VTY   ++  C  GR
Sbjct: 383 MLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGR 442

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +L E+  +G   + + Y T+M       +    + IL  M       + F Y  
Sbjct: 443 LNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFI 502

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-----------------SYNTLINLYCKE 163
           ++   V++  +++        V   ++L  V                 +Y++++  + ++
Sbjct: 503 LLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSED 562

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
           G+ E A  L+  M++     ++  +T L+   CK+     A + +  M + GF  +L +Y
Sbjct: 563 GRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSY 622

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVKD 250
             ++  L  +G+ D A  +F +   KD
Sbjct: 623 QHLLSGLICEGQTDKAKEIFMNSRWKD 649



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 99/267 (37%), Gaps = 55/267 (20%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+   +   C     + A  +   + K+G   + + YN L+ G    G+
Sbjct: 418 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 477

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA--------------- 105
              A  ILK++      PN  TY  +++   R R  +  L +  A               
Sbjct: 478 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLF 537

Query: 106 --MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
             MK+  +  +   Y +++  F + GR +EAT  +  M  D + L+   Y  L+  +CK 
Sbjct: 538 DVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKS 597

Query: 164 GKLEAAYLLLDEMEKQGF-----------------------------------ECDKYTH 188
            +   A++L+  M + GF                                     D+   
Sbjct: 598 KRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVW 657

Query: 189 TILIDGLCKAGNIKGAR---LHLEYMN 212
            ++IDGL K G+   +R   + LE MN
Sbjct: 658 KVIIDGLIKKGHSDISREMIIMLERMN 684


>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 5/281 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++N  C +    +A  +F  + +    P +VT+  LI GLC   RL  A  
Sbjct: 145 TPDVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFR 204

Query: 67  ILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           + +++    +  PNA  Y ++MK   R  +  L  E+   M       D   Y T+IAA 
Sbjct: 205 LKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAAL 264

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+GR  E    +E+M  +G + D V+YN +I+ +C E   EAAY +L+EM  +G + D 
Sbjct: 265 FKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDV 324

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++ ++I GLCK G  + A    E M + G   ++ +Y  + D L +  + + A  + + 
Sbjct: 325 ISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDE 384

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           M  K     S + +  V  LC+   L    K+L S +K  V
Sbjct: 385 MVFKGYAPKSASKTKFVEALCQEGNLELLCKVLNSLVKGNV 425



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   TF  +++GLC +   D A R+   + K     P    Y  L+KGLC+   L  A  
Sbjct: 181 PNVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFE 240

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + KE+  +    ++  Y+T++   F+  +      +L  M+  G   D   Y  +I+ F 
Sbjct: 241 LKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFC 300

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
                + A   +E+MV  G + D++SYN +I+  CKEGK   A  L ++M ++G   D  
Sbjct: 301 NEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVG 360

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++ IL DGLC+      A   L+ M   G+     +    V+ L ++G ++    V  S+
Sbjct: 361 SYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASKTKFVEALCQEGNLELLCKVLNSL 420

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
               V D   +S  V  +CK ++L + S+L+
Sbjct: 421 VKGNVIDGDAWSLAVSKVCKKEKLSNGSELV 451



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 114/269 (42%), Gaps = 39/269 (14%)

Query: 32  MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK-CC 90
           +  G+ K    P++ TYN+LI   C +G L  A  +  E+      PN +T+ T++   C
Sbjct: 136 ILSGIDKFA-TPDVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLC 194

Query: 91  FRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
             +R    ++L  +++     K    + F Y +++    ++  L  A +  ++MV + ++
Sbjct: 195 GDSRLDEAFRLKEDMVKVFNVKP---NAFVYASLMKGLCRVNELSLAFELKKEMVANKLR 251

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
           LD   Y+TLI    K G+ +  +++L+EM + G + D  T+  +I G C   + + A   
Sbjct: 252 LDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGV 311

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRL 267
           LE M   G   ++ +YN I+                                 LCK  + 
Sbjct: 312 LEEMVAKGCKPDVISYNVII-------------------------------SGLCKEGKW 340

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             A+ L     + G      + + + DGL
Sbjct: 341 REANDLFEDMPRRGCTPDVGSYRILFDGL 369



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 1/197 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L   +  ++ ++  L K    D    +   ++++G  P+ VTYN +I G C    
Sbjct: 245 MVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKD 304

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L+E+   G  P+ I+Y  I+    +  K++   ++   M R+G T D   Y  
Sbjct: 305 FEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRI 364

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +     +  +  EA   +++MV  G      S    +   C+EG LE    +L+ + K G
Sbjct: 365 LFDGLCEGMQFNEAAFILDEMVFKGYAPKSASKTKFVEALCQEGNLELLCKVLNSLVK-G 423

Query: 181 FECDKYTHTILIDGLCK 197
              D    ++ +  +CK
Sbjct: 424 NVIDGDAWSLAVSKVCK 440



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 40/170 (23%)

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+ +YN LIN  C  G L  A+ + DEM ++    +  T   LI GLC            
Sbjct: 147 DVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCG----------- 195

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVK-DSFTYSSMVHNLCK 263
                                   D ++D A  + E M     VK ++F Y+S++  LC+
Sbjct: 196 ------------------------DSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCR 231

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
              L  A +L    + + +R+       ++  L   G + E   +  ++R
Sbjct: 232 VNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMR 281


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 2/264 (0%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           + G++ P T  +N +L G  K     NA ++   + + G  P+  TY++L+    +AGR 
Sbjct: 284 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRW 343

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCT 120
            +AR +LKE+   G  P++  ++ I+   FR+R +++    +L  M   G   D   Y  
Sbjct: 344 ESARILLKEMEADGVKPSSYVFSRIL-AGFRDRGEWQKAFAVLREMHASGVRPDRHFYNV 402

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K   L  A D  ++M  +G++ D+V++NTLI+ +CK G+ + A  L DEM +  
Sbjct: 403 MIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESN 462

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ I+I+ L +    +G    L  M + G   N+  Y  +VD  G+ G+   A+
Sbjct: 463 CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAV 522

Query: 241 NVFESMEVKDSFTYSSMVHNLCKA 264
           +  E+M+        +M H L  A
Sbjct: 523 DCIEAMKADGLKPSPTMYHALVNA 546



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 15/280 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P    +N+M++   K     +A+  F  +++ G  P++VT+N LI   CK GR
Sbjct: 388 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 447

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE-ILSAMKRKGYTFDGFGYC 119
              A  +  E+ +S       TY  ++      ++++ G+E +L+ MK +G   +   Y 
Sbjct: 448 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWE-GVEAMLAEMKEQGLVPNIITYT 506

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  + + GR KEA D +E M  DG++     Y+ L+N Y + G  + A  ++  M   
Sbjct: 507 TLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRAD 566

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E        LI+   +   I  A   L++M + G   ++  Y  ++  L +       
Sbjct: 567 GLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIR------- 619

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           +  FE + V     Y  M+ + C   R   A  +L S L+
Sbjct: 620 VEQFEKVPV----IYEEMITSGCAPDR--KARAMLRSALR 653



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 123/280 (43%), Gaps = 43/280 (15%)

Query: 30  LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA---RWILKELGDSGHAPNAITYTTI 86
           LR+   L++H F+P+L +Y+ L+  L        A     +L +L +S   P+A  ++ +
Sbjct: 168 LRLLGLLREHSFLPDLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSDL 227

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYT-------------------------FDGF----- 116
           +    R R     LE+L++ +  G T                         F  F     
Sbjct: 228 ISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGE 287

Query: 117 ------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
                  Y  ++  +VKIG LK A   +++M   GV  D  +Y+ L++ Y + G+ E+A 
Sbjct: 288 IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESAR 347

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
           +LL EME  G +   Y  + ++ G    G  + A   L  M+  G   +   YN ++D  
Sbjct: 348 ILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTF 407

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           GK   + HA++ F+ M  +    D  T+++++   CK  R
Sbjct: 408 GKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 447



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           ++ D   ++ LI+ + +    +AA  LL   +  G        T LI  L  A  +  A 
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276

Query: 206 -LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
            L LE+           AYN ++    K G + +A  V + M       D  TYS +V  
Sbjct: 277 ALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDA 336

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             +A R  SA  LL      GV+        ++ G R  G
Sbjct: 337 YTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 376


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 118/242 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 156 LRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDAN 215

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 216 EMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGL 275

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D ++Y TLI+  CKEG LE A+     M ++    D 
Sbjct: 276 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDD 335

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+      A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 336 VAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKE 395

Query: 246 ME 247
           M+
Sbjct: 396 MQ 397



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 135/266 (50%), Gaps = 4/266 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V++N L+ G  + G +     +   + 
Sbjct: 128 FNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMH 187

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 247

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 248 LAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 307

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           DG CK G+++ A  H + M +     +  AY  ++  L ++ +   A  V   M      
Sbjct: 308 DGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLK 367

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D+ TY+ +++  CK   + + SKLL
Sbjct: 368 PDTGTYTMIINEFCKKGDVWTGSKLL 393



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 130/272 (47%), Gaps = 4/272 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +  A+ +   +   G
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWG 155

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ +++ T+M    R      G  + +AM   G   D + Y  +I    K  ++ +A 
Sbjct: 156 LRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDAN 215

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 216 EMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGL 275

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
           CK G++K A   ++ M+  G   +   Y  ++D   K+G ++ A    + M  +    D 
Sbjct: 276 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDD 335

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             Y++++  LC+ +R   A K+L   L  G++
Sbjct: 336 VAYTALISGLCQEERYLDAEKVLREMLSVGLK 367


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 5/298 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  ++N  C+      A ++      +G  P   TY +LI G CK G++  A  +L ++ 
Sbjct: 285 YTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQ 344

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G   N I + T++    R       L+I +AM++ G   D + Y T+     ++ RL 
Sbjct: 345 GQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLD 404

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +  M+  GV  + V+Y TLI+++CK+G +  A  L  EM ++G      T+ ++I
Sbjct: 405 EAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMI 464

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS- 251
           DG  K G+I+ A    + M K GF  ++  Y  +V     +GK+D A+ +FE M+ + + 
Sbjct: 465 DGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTE 524

Query: 252 ---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
                Y++++  L K  R  +A +L    LK+G+    S   A+V  L H+  R++ K
Sbjct: 525 PNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL-HTDNRKDVK 581



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 148/313 (47%), Gaps = 6/313 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G ++P  A+  ++++GLCK+   D+A R+   + +HG     + YN L+    +      
Sbjct: 173 GSVSPLAAS--VVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGR 230

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            + IL+ + + G      TYT ++      R       + + MK      D + Y  VI 
Sbjct: 231 VQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVIN 290

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A+ + G ++ A   +++ V +GV+ +  +Y  LIN +CK G++EAA +LL +M+ QG   
Sbjct: 291 AYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGL 350

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           ++     +IDG C+ G +  A      M K+G + ++  YN +   L +  ++D A  + 
Sbjct: 351 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLL 410

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
             M     V +  TY++++   CK   +  A +L     + G          ++DG    
Sbjct: 411 HIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKK 470

Query: 300 GCRREAKKIQSKI 312
           G  REA++ + ++
Sbjct: 471 GSIREAERFRKEM 483



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 6/264 (2%)

Query: 24  RYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           R  D A  + R L    G V  L   ++++ GLCK+GR+  AR +L ++   G + NA+ 
Sbjct: 156 RLADAAGLLERALGSCPGSVSPLAA-SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALC 214

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
           Y +++ C  R +      EIL  M+ +G       Y  ++ +      + +      +M 
Sbjct: 215 YNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMK 274

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
            + V  D+  Y  +IN YC+ G +  A  +LDE    G E ++ T+ +LI+G CK G ++
Sbjct: 275 ANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQME 334

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMV 258
            A + L  M   G   N   +N ++D   + G +D A+ +  +ME      D +TY+++ 
Sbjct: 335 AAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLA 394

Query: 259 HNLCKAKRLPSASKLLLSCLKSGV 282
             LC+  RL  A  LL   ++ GV
Sbjct: 395 CGLCRVNRLDEAKTLLHIMIEMGV 418



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 119/260 (45%), Gaps = 4/260 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+ +++NG CK    + A  +   +Q  G     + +N +I G C+ G +  A 
Sbjct: 313 VEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDAL 372

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   +   G   +  TY T+     R  +      +L  M   G   +   Y T+I+  
Sbjct: 373 KIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIH 432

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + EA     +M   G    +V+YN +I+ Y K+G +  A     EMEK+GF  D 
Sbjct: 433 CKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDV 492

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+  L+ G C  G +  A    E M + G + N+ AY  ++  L K+G+ + A  +++ 
Sbjct: 493 YTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDD 552

Query: 246 M----EVKDSFTYSSMVHNL 261
           M     + D   YS++V +L
Sbjct: 553 MLKAGLIPDDSLYSALVGSL 572



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  +++  CK+     A R+FR + + G  P +VTYN++I G  K G 
Sbjct: 413 MIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGS 472

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A    KE+   G  P+  TY +++     N K  + L++   MK++G   +   Y  
Sbjct: 473 IREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTA 532

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           +I+   K GR + A    + M+  G+  D   Y+ L+
Sbjct: 533 LISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 569


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 151/303 (49%), Gaps = 6/303 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            ++  +++G C+    D AL +F  +++ G  P++ TY +L+   C+ G+   A    +E
Sbjct: 261 VSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEE 320

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           + ++G  PN  TYT ++    +  K   G+E+LS M  KG       +  +I  + K G 
Sbjct: 321 MVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGM 380

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +++A   ++ M  + V  +  +YN LI  +C++  ++ A  LL++M +     +  T+  
Sbjct: 381 MEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNT 440

Query: 191 LIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           LI GLCKA  +  A RLH   M K GF  +   +   +D L K GK++ A  VFES++ K
Sbjct: 441 LIHGLCKARVVDSAWRLH-HLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEK 499

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               + F Y++++   CKA++   A  L    L  G          ++DGLR  G   +A
Sbjct: 500 HAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDA 559

Query: 306 KKI 308
             +
Sbjct: 560 MSL 562



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 149/317 (47%), Gaps = 4/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   +FN M+N  CK      A   F GL K GF  +  TY  LI G CK   
Sbjct: 181 MLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHE 240

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + + +   G   N ++YT ++       K    LE+   MK  G   D   Y  
Sbjct: 241 LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTV 300

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++AAF ++G+  EA  + E+MV +G++ ++ +Y  LI+ +CK GK++    +L  M ++G
Sbjct: 301 LVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKG 360

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                     LIDG CK G ++ A   L+ M       N   YN ++    +   +D A+
Sbjct: 361 LVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAM 420

Query: 241 ----NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                ++E+    +  TY++++H LCKA+ + SA +L    +K G    +    A +D L
Sbjct: 421 ALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCL 480

Query: 297 RHSGCRREAKKIQSKIR 313
              G   +A ++   ++
Sbjct: 481 CKMGKVEQAHQVFESLK 497



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 123/247 (49%), Gaps = 4/247 (1%)

Query: 32  MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
           +F+ +   G  P L+++N ++   CK G +  A+     L   G   ++ TYT+++    
Sbjct: 177 LFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYC 236

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           +  +     ++   M ++G   +   Y  +I  F ++G++ EA +   QM  DG   D+ 
Sbjct: 237 KIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVP 296

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y  L+  +C+ GK   A    +EM + G E + YT+T+LID  CK G +      L  M
Sbjct: 297 TYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTM 356

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRL 267
            + G  S++  +N ++D   K G ++ AI V +SM++     +S TY+ ++   C+ K +
Sbjct: 357 LEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSM 416

Query: 268 PSASKLL 274
             A  LL
Sbjct: 417 DRAMALL 423



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 147/318 (46%), Gaps = 6/318 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+ ++++  CK    D  + M   + + G V  +V +N LI G CK G 
Sbjct: 321 MVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGM 380

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCF-RNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  +L  +  +   PN+ TY  ++ C F R +     + +L+ M     + +   Y 
Sbjct: 381 MEDAICVLDSMKLNKVCPNSRTYNELI-CGFCRKKSMDRAMALLNKMYENKLSPNLVTYN 439

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I    K   +  A      M+ DG   D  ++   I+  CK GK+E A+ + + ++++
Sbjct: 440 TLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEK 499

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             E +++ +T LIDG CKA     A L  + M   G   N   +N ++D L K+GK++ A
Sbjct: 500 HAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDA 559

Query: 240 INVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +++ + M   D+     TY+ ++  + +      A+  L   + SG +       A +  
Sbjct: 560 MSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKA 619

Query: 296 LRHSGCRREAKKIQSKIR 313
               G   EA+++  KI+
Sbjct: 620 YCRQGRLLEAEEMVVKIK 637



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 150/368 (40%), Gaps = 65/368 (17%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT------------------ 47
           L+P   T+N +++GLCK R  D+A R+   + K GFVP+  T                  
Sbjct: 431 LSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAH 490

Query: 48  -----------------YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                            Y  LI G CKA +   A  + K +   G  PN+IT+  ++   
Sbjct: 491 QVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGL 550

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
            +  K +  + ++  M +         Y  +I   ++      A  +++QM++ G Q ++
Sbjct: 551 RKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNV 610

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA------ 204
           V+Y   I  YC++G+L  A  ++ +++++G   D + + +L++     G +  A      
Sbjct: 611 VTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIR 670

Query: 205 ------------------RLHLEYMNKIGFDSNLEAYNCIVD--RLGKDGKIDHAINVFE 244
                              L  E  NK G   +L + N  VD   + K    +    +FE
Sbjct: 671 MFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFE 730

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M     V +  TYS ++  LCK + L  A +L     +SG+   ++   +++      G
Sbjct: 731 KMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLG 790

Query: 301 CRREAKKI 308
              EA ++
Sbjct: 791 MHEEALRL 798



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 23/267 (8%)

Query: 22  KNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80
            N +   AL  F+ +  +HGF+  + +Y  L+  L + G LR A  +             
Sbjct: 79  PNLHPLTALNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLRAAENV------------- 125

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
               +++K C  + + +  L +L+      ++     Y  +     + G + E     + 
Sbjct: 126 --RNSMIKSCVSSHEARFVLNLLT---HHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKD 180

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           M+ DGV+ +++S+NT++N +CK G +  A      + K GF CD +T+T LI G CK   
Sbjct: 181 MLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHE 240

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSS 256
           +  A    E M + G   N  +Y  ++    + GKID A+ +F  M+      D  TY+ 
Sbjct: 241 LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTV 300

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVR 283
           +V   C+  +   A K     +++G+ 
Sbjct: 301 LVAAFCEVGKETEALKFFEEMVENGIE 327



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 9/246 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+   +   C+      A  M   +++ G + +   Y++L+      G+
Sbjct: 601 MISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQ 660

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +A  +L  + D+G  P+  TY+ ++K     +  K G+         G   +      
Sbjct: 661 LDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGM---------GLDLNSTNISV 711

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
             A   KI   +  T   E+MV  G   ++ +Y+ LI   CK   L  A+ L + M++ G
Sbjct: 712 DNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESG 771

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               +  H  L+   CK G  + A   L+ M +    ++LE+Y  +V  L + G  + A 
Sbjct: 772 ISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAE 831

Query: 241 NVFESM 246
            +F S+
Sbjct: 832 EIFRSL 837



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 77/160 (48%)

Query: 32  MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
           +F  + + G VP + TY+ LIKGLCK   L  A  +   + +SG +P+   + +++  C 
Sbjct: 728 LFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCC 787

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           +   ++  L +L +M    +      Y  ++    + G  ++A +    +++ G   D V
Sbjct: 788 KLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEV 847

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +  L++   ++G ++    L D MEK G      THT+L
Sbjct: 848 VWKVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTML 887



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 62/142 (43%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T++ ++ GLCK  +   A R+F  +++ G  P    +N L+   CK G    A  
Sbjct: 738 VPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALR 797

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  + +  H  +  +Y  ++   F     +   EI  ++   GY +D   +  ++   V
Sbjct: 798 LLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLV 857

Query: 127 KIGRLKEATDYMEQMVTDGVQL 148
           + G + E +   + M   G +L
Sbjct: 858 RKGYVDECSQLRDIMEKTGCRL 879



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 13/210 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG--LCKAGRLRTAR 65
           P   T++I+L  L           +F    K G   +L + NI +    + K        
Sbjct: 678 PSRQTYSILLKHL-----------IFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIIT 726

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +++ + G  PN  TY+ ++K   +     L   + + MK  G +     + +++++ 
Sbjct: 727 MLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSC 786

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G  +EA   ++ M+       + SY  L+    ++G  E A  +   +   G+  D+
Sbjct: 787 CKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDE 846

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
               +L+DGL + G +       + M K G
Sbjct: 847 VVWKVLLDGLVRKGYVDECSQLRDIMEKTG 876


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 133/294 (45%), Gaps = 27/294 (9%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFNI++NGLC       A  + + ++++GFVP +VTYN L+   CK GR + A  +
Sbjct: 231 PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIEL 290

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G   +  TY   +     N +      +L  M+++  + +   Y T+I  FVK
Sbjct: 291 IDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVK 350

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE----- 182
            G++  A     +M    +  + V+YN LI  +C  G  E A  LLD ME  G       
Sbjct: 351 EGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEHG 410

Query: 183 ------------------CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
                              D +T  +L+  LC+ G +  A   L +M++IG   N   Y+
Sbjct: 411 NVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYD 470

Query: 225 CIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           CI++  G  G   +A + F+ M    +    FTY S++  LCK   L  A K L
Sbjct: 471 CIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFL 524



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 148/333 (44%), Gaps = 28/333 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MIC  +     T+N+ ++ LC N  +  A  + + ++K    P  VTYN LI G  K G+
Sbjct: 294 MICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGK 353

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+     +PN +TY  ++        ++  L +L  M+  G   +  G  T
Sbjct: 354 IGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEHGNVT 413

Query: 121 -----------------------VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
                                  ++++  + G+L EA  ++  M   G+  + ++Y+ +I
Sbjct: 414 EAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCII 473

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           N Y   G    A+   D+M K G     +T+  L+ GLCK GN+  A+  L  ++ I   
Sbjct: 474 NGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGA 533

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKL 273
            +   YN ++    K G +  A+ +F+ M     + DS+TYSS++  LC+  +  +A  L
Sbjct: 534 VDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCL 593

Query: 274 LLSCLKSGVRILKSAQ-KAVVDGLRHSGCRREA 305
             + +  G           +VDGL  +G  + A
Sbjct: 594 FGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAA 626



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 5/310 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T N++++ LC++     A +    + + G VP  +TY+ +I G    G    A     ++
Sbjct: 433 TCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDM 492

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+  TY +++K   +        + L+ +       D   Y T++A   K G L
Sbjct: 493 IKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNL 552

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYTHTI 190
            EA    ++MV + V  D  +Y++L+   C++GK + A  L    M +     +   +T 
Sbjct: 553 HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTC 612

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           L+DGL KAG+ K A    E M K G   +  A+N I+D   + G++  A + F +M    
Sbjct: 613 LVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWG 672

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
              +  TY+ ++H   K + L     L  + ++ G+   K    +++ GL  SG      
Sbjct: 673 VCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGV 732

Query: 307 KIQSKIRMAK 316
           K+  K+ M +
Sbjct: 733 KLLGKMIMEE 742



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 16/275 (5%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G L P    +  +++GL K  +   A   F  + K G  P+ V +N +I    + G++  
Sbjct: 601 GTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMK 660

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A      +   G  PN  TY  ++    + +     L + S M R+G   D   + ++I 
Sbjct: 661 ANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLIL 720

Query: 124 AFVKIGR------------LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
              K G             ++E+T  + +M+ +GV      Y TLIN  C+ G ++ A+ 
Sbjct: 721 GLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFK 780

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
           L DEME  GF   +   + ++ GL   G  + A L L++M ++     +  +  ++ R  
Sbjct: 781 LKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFC 840

Query: 232 KDGKIDHAINVFESMEV----KDSFTYSSMVHNLC 262
           +D KI  A+ +   ME+     D   Y+ ++  +C
Sbjct: 841 RDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMC 875



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 149/330 (45%), Gaps = 17/330 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+  ++ P + T++ +L GLC+      A+ +F      G   P  V Y  L+ GL KAG
Sbjct: 562 MVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAG 621

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
             + A +  +E+   G  P+ + +  I+  C R  +     +  S M+  G   +   Y 
Sbjct: 622 HPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYN 681

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK------------LE 167
            ++  F K   L         M+ +G+  D +++++LI    K G             +E
Sbjct: 682 ILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIME 741

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 227
            + ++L EM + G       +  LI+G+C+ G+I+GA    + M  +GF S+  A + +V
Sbjct: 742 ESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMV 801

Query: 228 DRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             L   GK + A+ V + M     +    T+++++H  C+  ++  A KL       G++
Sbjct: 802 RGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLK 861

Query: 284 ILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           +   A   ++ G+  +G    A ++  ++R
Sbjct: 862 LDVVAYNVLIMGMCANGDSAAAFELYEEMR 891



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 115/268 (42%), Gaps = 12/268 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR------- 60
           P  AT+NI+L+G  K +     L ++  + + G  P+ +T++ LI GL K+G        
Sbjct: 675 PNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKL 734

Query: 61  -----LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115
                +  +  +L E+ ++G  P    Y T++    R    +   ++   M+  G+    
Sbjct: 735 LGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHE 794

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
                ++   +  G+ ++A   ++ M+   +   I ++ TL++ +C++ K+  A  L   
Sbjct: 795 VAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGV 854

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           ME  G + D   + +LI G+C  G+   A    E M       N+  Y  +VD +     
Sbjct: 855 MELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANN 914

Query: 236 IDHAINVFESMEVKDSFTYSSMVHNLCK 263
           +     +   ++ +   ++     +L K
Sbjct: 915 LIQGEKLLTDLQERGLISWGGSTQHLDK 942



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 36/207 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P  A +  ++NG+C+      A ++   ++  GF    V  + +++GL   G+
Sbjct: 750 MLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGK 809

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L  +      P   T+TT+M    R+ K      I  A+K KG          
Sbjct: 810 TEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAK------IAEALKLKGV--------- 854

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                               M   G++LD+V+YN LI   C  G   AA+ L +EM  + 
Sbjct: 855 --------------------MELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRD 894

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARL 206
              +  T+ +L+D +  A N I+G +L
Sbjct: 895 LCPNITTYAVLVDAISAANNLIQGEKL 921



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           ++ LI +Y KEG ++ A    + +   GF+   YT  +++  + K    +        M+
Sbjct: 166 FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMS 225

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G   N+  +N +++ L  +G +  A N+ + ME    V    TY+++++  CK  R  
Sbjct: 226 DKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYK 285

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           +A +L+   +  G+          +D L  +    +A  +  K+R   IS
Sbjct: 286 AAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMIS 335


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 124/244 (50%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I   L     ++N+++N  C+ +  DNA   FR +Q  G VP LVT+N LI G CK G 
Sbjct: 420 LISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGA 479

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +L+ L ++G  P+  T+++I+    + ++ +  LE  + M   G   +   Y  
Sbjct: 480 IDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNI 539

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +   IG +  +   + +M  +G+  D  SYN LI ++C+  K+E A  L D M + G
Sbjct: 540 LIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSG 599

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D YT++  I+ L ++G ++ A+     M   G   +    N I+  L +   ++ A 
Sbjct: 600 LNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQ 659

Query: 241 NVFE 244
           N+ E
Sbjct: 660 NIIE 663



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 159/411 (38%), Gaps = 114/411 (27%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++G+CK    D ALR+ R ++  G  P + TY +LI+G C A R+  A  + + +
Sbjct: 216 TYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETM 275

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS--------------------------- 104
            DSG  PN  T   ++   FR       LE+LS                           
Sbjct: 276 KDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLAN 335

Query: 105 -------------AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME------------ 139
                         + R GY      +  V+A  VK   L+E  D  E            
Sbjct: 336 NSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIG 395

Query: 140 -----------------------QMVTDGVQLDIVSYN---------------------- 154
                                  Q+++DG+  ++ SYN                      
Sbjct: 396 AYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDM 455

Query: 155 -------------TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
                        TLIN +CK+G ++ A  LL+ + + G + D +T + ++DGLC+    
Sbjct: 456 QVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRT 515

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
           + A      M + G + N   YN ++  L   G +  ++ +   M+      D+++Y+++
Sbjct: 516 EEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNAL 575

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +   C+  ++  A KL  S  +SG+        A ++ L  SG   EAKK+
Sbjct: 576 IQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKM 626



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 133/273 (48%), Gaps = 4/273 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++  L KN + +   R++  L   G +  + +YN++I   C+A  +  A    +++   G
Sbjct: 400 LIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRG 459

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             PN +T+ T++    ++       ++L ++   G   D F + +++    +I R +EA 
Sbjct: 460 VVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEAL 519

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +   +M+  G+  + V YN LI   C  G +  +  LL  M+K+G   D Y++  LI   
Sbjct: 520 ECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIF 579

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDS 251
           C+   ++ A+   + M++ G + +   Y+  ++ L + G+++ A  +F SME      DS
Sbjct: 580 CRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDS 639

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
           +  + ++  L + + +  A  ++  C + G+ +
Sbjct: 640 YICNLIIKILVQQEYVEEAQNIIERCRQKGISL 672



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 104/214 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN ++NG CK+   D A ++   L ++G  P++ T++ ++ GLC+  R   A 
Sbjct: 460 VVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEAL 519

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E+ + G  PNA+ Y  +++           +++L  M+++G + D + Y  +I  F
Sbjct: 520 ECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIF 579

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++ ++++A    + M   G+  D  +Y+  I    + G+LE A  +   ME  G   D 
Sbjct: 580 CRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDS 639

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           Y   ++I  L +   ++ A+  +E   + G   N
Sbjct: 640 YICNLIIKILVQQEYVEEAQNIIERCRQKGISLN 673



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 143/336 (42%), Gaps = 46/336 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P T  +N +++ L K+   D A   F+ +     V +  TYN LI G+CK G +  A 
Sbjct: 175 LSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEAL 234

Query: 66  WILKELGDSGHAPNAITYTT---------------------------------------I 86
            +++++ D GH PN  TYT                                        +
Sbjct: 235 RLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVHGV 294

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
            +C   ++  +L  E L   + +          TV+         KE   ++ +++  G 
Sbjct: 295 FRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMVVFLRRVLGRGG 354

Query: 147 QLDIVS-YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-AGNIKGA 204
                S +N ++    K  +L     + + + KQG +     +  LI+ L K     +G 
Sbjct: 355 YFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGD 414

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
           R++ + ++  G  SN+ +YN I++   +   +D+A   F  M+V+    +  T++++++ 
Sbjct: 415 RVYGQLISD-GLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLING 473

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            CK   +  A KLL S L++G++       ++VDGL
Sbjct: 474 HCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGL 509



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 74/152 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P    +NI++  LC       ++++ R +QK G  P+  +YN LI+  C+  +
Sbjct: 525 MIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNK 584

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A+ +   +  SG  P+  TY+  ++    + + +   ++  +M+  G + D +    
Sbjct: 585 VEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNL 644

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
           +I   V+   ++EA + +E+    G+ L+ + 
Sbjct: 645 IIKILVQQEYVEEAQNIIERCRQKGISLNSIP 676



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 6/172 (3%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW---ILKELGDSGHAPNAITYTT 85
           ++ + R L+  GF    VT ++L   L   GRL  A +   +  ++   G +P    Y  
Sbjct: 128 SVDLLRELRNLGF---RVTEDLLCALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNA 184

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    ++    L       M       D F Y T+I    K+G + EA   + QM   G
Sbjct: 185 LIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKG 244

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
              ++ +Y  LI  +C   +++ A+ + + M+  G   ++ T   L+ G+ +
Sbjct: 245 HFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVHGVFR 296



 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 10/129 (7%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +  L N   ++G    +  LL E+   GF   + T  +L   L   G +  A        
Sbjct: 112 HRALRNTLHRKGPALLSVDLLRELRNLGF---RVTEDLLCALLASWGRLGLANYSAHVFC 168

Query: 213 KIGF---DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
           +I F         YN ++D L K   ID A   F+ M     V D FTY++++H +CK  
Sbjct: 169 QISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVG 228

Query: 266 RLPSASKLL 274
            +  A +L+
Sbjct: 229 VVDEALRLV 237


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 146/306 (47%), Gaps = 6/306 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN+++NGL K      A  + + + K G      TYN LI G CK G L  A  +
Sbjct: 270 PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALAL 329

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G +P   ++ TIM    +  K     + LS M +K    D   Y T+I  F +
Sbjct: 330 WEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCR 389

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G + EA   ++++    +  +IV+YNTLI+  C+ G LE A  L ++M  +G   D  T
Sbjct: 390 LGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVT 449

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC-IVDRLGKDGKIDHAINVFESM 246
           +T+L++G CK GN+  A+   + M  +G   +  AY   IV  L K G    A  + E M
Sbjct: 450 YTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGEL-KLGDTAKAFKLQEEM 508

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             K    D  TY+  V+ LCK   L  A +LL   ++ G         + +     +G  
Sbjct: 509 LTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHL 568

Query: 303 REAKKI 308
           RE ++I
Sbjct: 569 REGREI 574



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 5/243 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +   + G  K   T  A ++   +   GF P+++TYN+ + GLCK G L  A 
Sbjct: 478 LAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAG 537

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+++   GH P+ +TYT+ M     N   + G EI   M  +G T     Y  +I A 
Sbjct: 538 ELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAH 597

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GRL  A  Y  +M   GV  ++++YN LIN +CK  K++ A     EM+++G   +K
Sbjct: 598 ALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNK 657

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNK-IGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           YT+TILI+  C  G  + A RL+ + + K I  DS    +  ++ +L KD K+  A+   
Sbjct: 658 YTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSC--THGALLKKLDKDYKV-QAVQFI 714

Query: 244 ESM 246
           ES+
Sbjct: 715 ESL 717



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 147/328 (44%), Gaps = 9/328 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P   ++N ++ G C+      A  +   L+       +VTYN LI GLC+ G 
Sbjct: 368 MLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGD 427

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L TA  + +++ + G  P+ +TYT ++    +     +  E    M   G   D F Y  
Sbjct: 428 LETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTA 487

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I   +K+G   +A    E+M+T G   D+++YN  +N  CK G LE A  LL +M + G
Sbjct: 488 RIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDG 547

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+T  +    + G+++  R     M   G    +  Y  ++     +G++D A+
Sbjct: 548 HVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAM 607

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD-- 294
             F  M+    V +  TY+ +++  CK +++  A K  +   + G+   K     +++  
Sbjct: 608 AYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINEN 667

Query: 295 ---GLRHSGCRREAKKIQSKIRMAKISH 319
              G      R  A+ +  +IR    +H
Sbjct: 668 CNMGKWQEALRLYAQMLGKRIRPDSCTH 695



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 39/309 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ML+  CK      AL +   +Q+ G  P  VT+N+LI GL K G L+ A+ +
Sbjct: 235 PTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGL 294

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++E+  +G   +  TY  ++  C                          GYC       K
Sbjct: 295 IQEMAKAGLRVSPYTYNPLI--C--------------------------GYC-------K 319

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G L EA    E+MVT GV   + S+NT++  +CKEGK+  A   L +M K+    D  +
Sbjct: 320 KGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIIS 379

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G C+ GNI  A + L+ +       N+  YN ++D L + G ++ A+ + E M 
Sbjct: 380 YNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMI 439

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY+ +V+  CK   +  A +     L  G+   + A  A + G    G   
Sbjct: 440 NRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTA 499

Query: 304 EAKKIQSKI 312
           +A K+Q ++
Sbjct: 500 KAFKLQEEM 508



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 129/270 (47%), Gaps = 4/270 (1%)

Query: 30  LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89
           L +F  + ++ F+P++   N ++K L     L  A  + + +G+ G  P   TY T++  
Sbjct: 187 LLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHS 246

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
             +  + +  L+++  M+ +G       +  +I    K G L++A   +++M   G+++ 
Sbjct: 247 FCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVS 306

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
             +YN LI  YCK+G L  A  L +EM  +G      +H  ++ G CK G +  AR  L 
Sbjct: 307 PYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLS 366

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-SF---TYSSMVHNLCKAK 265
            M K     ++ +YN ++    + G I  A  + + +  ++ SF   TY++++  LC+  
Sbjct: 367 DMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLG 426

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            L +A KL    +  G+         +V+G
Sbjct: 427 DLETALKLKEDMINRGIHPDVVTYTVLVNG 456



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 91/206 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+N+ +NGLCK    + A  + + + + G VP+ VTY   +    + G 
Sbjct: 508 MLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGH 567

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR  R I  ++   G  P  +TYT ++     N +    +     M+ KG   +   Y  
Sbjct: 568 LREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNV 627

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K+ ++ +A  +  +M   G+  +  +Y  LIN  C  GK + A  L  +M  + 
Sbjct: 628 LINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKR 687

Query: 181 FECDKYTHTILIDGLCKAGNIKGARL 206
              D  TH  L+  L K   ++  + 
Sbjct: 688 IRPDSCTHGALLKKLDKDYKVQAVQF 713



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   T+   ++   +N +      +F  +   G  P +VTY +LI      GR
Sbjct: 543 MIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGR 602

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A     E+ + G  PN ITY  ++    + RK     +    M+ KG   + + Y  
Sbjct: 603 LDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTI 662

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
           +I     +G+ +EA     QM+   ++ D  ++  L+    K+ K++A   +
Sbjct: 663 LINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKDYKVQAVQFI 714


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 150/309 (48%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T   ++   CK +  + A  ++ G+ + G +P++VT + L+ GLC+ GR   A  +
Sbjct: 257 PSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYAL 316

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   G APN +TY T +    + ++    L +L  M  +G   D   Y TV+    K
Sbjct: 317 FREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGK 376

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+++EA D +   ++D +  + V+Y  L++ +C+ G ++ A  +L +ME++    +  T
Sbjct: 377 EGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVT 436

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
            + +++GL K G I  A  ++  M   G   N+  Y  ++D   K    + A++V+  M 
Sbjct: 437 FSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDML 496

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 ++F   S+V+ L K   +  A  L     + G+ +       ++DGL  +G   
Sbjct: 497 HEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMP 556

Query: 304 EAKKIQSKI 312
            A K+  ++
Sbjct: 557 AALKVGQEL 565



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 141/294 (47%), Gaps = 4/294 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P  AT+N M++  C+   T  AL++   ++     P L+TY  L+ GL +AG +  A+
Sbjct: 605 LEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAK 664

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           ++L E+  +G  P  +TY  +++ C  +R   + LE+   M   G   D   Y T++   
Sbjct: 665 YLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVL 724

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G  ++AT  +++M+  G+  D +++N LI  +CK   L+ A+    +M  QG   + 
Sbjct: 725 CCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNI 784

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L+ GL  AG I  A   +  M K+G + N   Y+ +V    K      A+ ++  
Sbjct: 785 ATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCE 844

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M     +  + TY+S++ +  KA  +  A +L     + GV    S    +++G
Sbjct: 845 MVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNG 898



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 138/274 (50%), Gaps = 4/274 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ ++++  C+    D A +M   +++    P +VT++ ++ GL K G +  A
Sbjct: 394 NITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKA 453

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
              ++++ DSG APN +TY T++   F+ +  +  L++   M  +G   + F   +++  
Sbjct: 454 AGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNG 513

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G ++EA    + M   G+ LD V+Y TL++   K G + AA  +  E+ ++    D
Sbjct: 514 LRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPD 573

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              + + I+ LC+ G    A+  L+ M   G + +   YN ++    ++G    A+ +  
Sbjct: 574 AVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLN 633

Query: 245 SME---VKDSF-TYSSMVHNLCKAKRLPSASKLL 274
            M+   +K +  TY+++V  L +A  +  A  LL
Sbjct: 634 EMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLL 667



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 131/278 (47%), Gaps = 4/278 (1%)

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
           +V +N LI G CK   +  A  +++ +   G + + + Y T++   F +       E+  
Sbjct: 189 VVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAE 248

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            MK  G       + T+I  + K+ R++EA    E MV  GV  D+V+ + L++  C++G
Sbjct: 249 RMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDG 308

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           +   AY L  EM+K G   +  T+   ID L K   +  +   L  M   G   +L  Y 
Sbjct: 309 RFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYT 368

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++DRLGK+GKI+ A +V           +  TY+ +V   C+A  +  A ++LL   + 
Sbjct: 369 TVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEK 428

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            V        ++++GL   GC  +A     K++ + I+
Sbjct: 429 SVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIA 466



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 145/335 (43%), Gaps = 39/335 (11%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N +++G CK +    AL +   +   G   ++V YN L+ G   +G    A  + + + 
Sbjct: 192 WNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMK 251

Query: 73  DSGHAPNAITYTTI---------MKCCF--------------------------RNRKYK 97
             G  P+ +T+TT+         ++  F                          R+ ++ 
Sbjct: 252 ADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFS 311

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
               +   M + G   +   YCT I +  K+ R+ E+   + +MV+ GV +D+V Y T++
Sbjct: 312 EAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVM 371

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +   KEGK+E A  +L          +  T+T+L+D  C+AGNI GA   L  M +    
Sbjct: 372 DRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVS 431

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            N+  ++ I++ L K G I  A      M+      +  TY +++    K +   +A  +
Sbjct: 432 PNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDV 491

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               L  GV        ++V+GLR +G   EA+ +
Sbjct: 492 YRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEAL 526



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 120/261 (45%), Gaps = 4/261 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  +++G  K +  + AL ++R +   G        + L+ GL K G +  A 
Sbjct: 465 IAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAE 524

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + K++G+ G   + + Y T+M   F+       L++   +  +  + D   Y   I   
Sbjct: 525 ALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCL 584

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++G+  EA  ++++M   G++ D  +YNT+I+  C+EG    A  LL+EM+    + + 
Sbjct: 585 CRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNL 644

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T L+ GL +AG ++ A+  L  M   GF      Y  ++            + V E 
Sbjct: 645 ITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHEL 704

Query: 246 MEV----KDSFTYSSMVHNLC 262
           M       D   Y+++VH LC
Sbjct: 705 MMGAGLHADITVYNTLVHVLC 725



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 154/356 (43%), Gaps = 39/356 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T + +++GLC++     A  +FR + K G  P  VTY   I  L K  R
Sbjct: 285 MVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQR 344

Query: 61  LRTARWILKE-------------------LGDSG----------HA------PNAITYTT 85
           +  +  +L E                   LG  G          HA      PN +TYT 
Sbjct: 345 VNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTV 404

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    R        ++L  M+ K  + +   + +++   VK G + +A  YM +M   G
Sbjct: 405 LVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSG 464

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  ++V+Y TLI+ + K    EAA  +  +M  +G E + +    L++GL K GNI+ A 
Sbjct: 465 IAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAE 524

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ESME---VKDSFTYSSMVHNL 261
              + M + G   +   Y  ++D L K G +  A+ V  E ME     D+  Y+  ++ L
Sbjct: 525 ALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCL 584

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           C+  +   A   L     +G+   ++    ++      G   +A K+ ++++ + I
Sbjct: 585 CRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSI 640



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 101/214 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T TFN ++ G CK+ + DNA   +  +   G  P + T+N L+ GL  AGR
Sbjct: 740 MLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGR 799

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++ E+   G  PN +TY  ++    +       L +   M  KG+      Y +
Sbjct: 800 IGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNS 859

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ F K G + +A +   +M   GV     +Y+ L+N + K        +LL +M++ G
Sbjct: 860 LISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELG 919

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           F+  K T + +     K G    AR  L+ + K+
Sbjct: 920 FKPSKGTISSMSRAFSKPGMTWEARRLLKTLFKV 953



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 17/254 (6%)

Query: 42  VP-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP----NAITYTTIMKCCFRNRKY 96
           VP + +T N +I   C    LR A  +L+    SG  P    + ++Y   +         
Sbjct: 76  VPGDPLTLNSIILSYCSLHALRPALSLLRS--SSGPQPQVAADTVSYNIFLAGLSEQGHG 133

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV----TDGVQLDIVS 152
           +L   +LS M ++G  +DG    T +    + G + EA    E +V     DG  L +V 
Sbjct: 134 RLAPPVLSEMCKRGVPWDGVTMSTALVGLSRTGLVGEAAALAEMLVRGRGIDG--LGVVG 191

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +N LI+ YCK   + AA  +++ M  QG   D   +  L+ G   +G+   A    E M 
Sbjct: 192 WNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMK 251

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLP 268
             G + ++  +  ++    K  +I+ A  ++E M     + D  T S++V  LC+  R  
Sbjct: 252 ADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFS 311

Query: 269 SASKLLLSCLKSGV 282
            A  L     K GV
Sbjct: 312 EAYALFREMDKIGV 325



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 96/232 (41%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M     TP   T+  +L     +R     L +   +   G   ++  YN L+  LC  G 
Sbjct: 670 MASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGM 729

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            R A  +L E+   G AP+ IT+  ++    ++          + M  +G + +   + T
Sbjct: 730 TRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNT 789

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      GR+ EA   + +M   G++ + ++Y+ L+  Y K+     A  L  EM  +G
Sbjct: 790 LLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKG 849

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           F     T+  LI    KAG +  A+     M + G       Y+ +++   K
Sbjct: 850 FIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSK 901


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 152/300 (50%), Gaps = 4/300 (1%)

Query: 10   TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            T ++N ++ GL      D A  +F  +++ G  P+  TYN+L+  + K+ R+     + +
Sbjct: 834  TGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQE 893

Query: 70   ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            E+   G+    +TY TI+    ++R+ +  +++   +  +G++     Y  ++   +K G
Sbjct: 894  EMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAG 953

Query: 130  RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            R+++A +   +M+  G + +   YN L+N +   G  E    L  +M  QG   D  ++T
Sbjct: 954  RIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYT 1013

Query: 190  ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            I+ID LCKAG +     +   + ++G + +L  YN ++D LGK  +++ A+++F  M+  
Sbjct: 1014 IIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 1073

Query: 248  --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              V + +TY+S++ +L KA +   A K+    L  G +       A++ G   SG    A
Sbjct: 1074 GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSA 1133



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 153/312 (49%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++ I +  L + R  D A R+   ++  G  P+++T+ +LI+ LC AGR+  A+
Sbjct: 305 VKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAK 364

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++  S   P+ +TY T++     N + +  +EI +AMK  GY  +   Y  VI A 
Sbjct: 365 DVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDAL 424

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++GR+ EA +  ++M   G+  +  SYN+LI+ + K  +   A  L   M+  G + + 
Sbjct: 425 CQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNG 484

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YTH + I+   K+G    A    E M   G   ++ A N ++  L K G++  A  VF  
Sbjct: 485 YTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHE 544

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++      D+ TY+ M+    KA +   A K+    +++          +++D L  +G 
Sbjct: 545 LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGR 604

Query: 302 RREAKKIQSKIR 313
             EA +I  +++
Sbjct: 605 GDEAWQIFYQLK 616



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 114/248 (45%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            T+N +++GL K+R  + A+ ++  L   GF P   TY  L+ GL KAGR+  A  +  E+
Sbjct: 906  TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 965

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             + G   N   Y  ++         +    +   M  +G   D   Y  +I    K G+L
Sbjct: 966  LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 1025

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             +   Y  Q++  G++ D+++YN LI+   K  +LE A  L +EM+K+G   + YT+  L
Sbjct: 1026 NDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSL 1085

Query: 192  IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
            I  L KAG    A    E +   G+  N+  YN ++      G  D A   +  M V   
Sbjct: 1086 ILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGC 1145

Query: 252  FTYSSMVH 259
               SS  H
Sbjct: 1146 LPNSSTCH 1153



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 144/293 (49%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T  + +N   K+  +  A++ +  ++  G VP++V  N ++ GL K+GRL  A+ +
Sbjct: 482 PNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRV 541

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             EL   G +P+ ITYT ++KCC +  K+   ++I   M       D     ++I    K
Sbjct: 542 FHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYK 601

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  EA     Q+    ++    +YNTL+    +EGK++    LL+EM    +  +  T
Sbjct: 602 AGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLIT 661

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++D LCK G +  A   L  M   G   +L +YN ++  L K+ + + A ++F  M+
Sbjct: 662 YNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMK 721

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLS-CLKSGVRILKSAQKAVVDGL 296
              + D  T  +++ +  K   +  A  ++    L+ G +  +S+  ++++G+
Sbjct: 722 KVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGI 774



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 145/311 (46%), Gaps = 4/311 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++  L K+ +   AL +++ +   G VP + TY++L+    K   + T  W+L+E+
Sbjct: 241 TYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 300

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN  +YT  ++   + R++     IL+ M+ +G   D   +  +I      GR+
Sbjct: 301 EAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRI 360

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D   +M     + D V+Y TL++ +   G+ ++   + + M+  G+  +   +T +
Sbjct: 361 SDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAV 420

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           ID LC+ G +  A    + M + G      +YN ++    K  +   A+ +F+ M++   
Sbjct: 421 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGP 480

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             + +T+   ++   K+     A +        G+     A  AV+ GL  SG    AK+
Sbjct: 481 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 540

Query: 308 IQSKIRMAKIS 318
           +  +++   +S
Sbjct: 541 VFHELKAMGVS 551



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 152/382 (39%), Gaps = 74/382 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +  P     N +++ L K    D A ++F  L++    P   TYN L+ GL + G+
Sbjct: 580 MIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGK 639

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-- 118
           ++    +L+E+  S + PN ITY TI+ C  +N      L++L +M  KG   D   Y  
Sbjct: 640 VKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNT 699

Query: 119 --------------------------------CTVIAAFVKIGRLKEA------------ 134
                                           CT++ +FVKIG +KEA            
Sbjct: 700 VIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPG 759

Query: 135 ------------------------TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
                                    ++ E + + G+ LD      LI   CK+ K   A+
Sbjct: 760 SKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAH 819

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            L+ + +  G      ++  LI GL     I  A      M ++G   +   YN ++D +
Sbjct: 820 ELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 879

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
           GK  +I+  + V E M  K       TY++++  L K++RL  A  L  + +  G     
Sbjct: 880 GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 939

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
                ++DGL  +G   +A+ +
Sbjct: 940 CTYGPLLDGLLKAGRIEDAENL 961



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 123/269 (45%), Gaps = 4/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF  +  GL       +A      +++ G V    TYN L+  L K+G  R A  + K
Sbjct: 204 VGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYK 263

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+  TY+ +M    + R  +  L +L  M+  G   + + Y   I    +  
Sbjct: 264 VMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAR 323

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R  EA   + +M  +G + D++++  LI + C  G++  A  +  +M+K   + D+ T+ 
Sbjct: 324 RFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYI 383

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            L+D     G  +        M   G++ N+ AY  ++D L + G++  A+ +F+ M+  
Sbjct: 384 TLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 443

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             V + ++Y+S++    KA R   A +L 
Sbjct: 444 GIVPEQYSYNSLISGFLKADRFGDALELF 472



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 150/340 (44%), Gaps = 41/340 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +  P   T+N +L+ LCKN   ++AL M   +   G +P+L +YN +I GL K  R
Sbjct: 650 MYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEER 709

Query: 61  ----------------------------------LRTARWILKE-LGDSGHAPNAITYTT 85
                                             ++ A  I+KE     G   +  +  +
Sbjct: 710 YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHS 769

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +M+   +    +  +E    +   G T D F  C +I    K  +  EA + +++  + G
Sbjct: 770 LMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFG 829

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V L   SYN+LI     E  ++ A  L  EM++ G   D++T+ +L+D + K+  I+   
Sbjct: 830 VSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEML 889

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHN 260
              E M++ G++S    YN I+  L K  +++ AI+++ ++ +   F     TY  ++  
Sbjct: 890 KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL-MSQGFSPTPCTYGPLLDG 948

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           L KA R+  A  L    L+ G +   +    +++G R +G
Sbjct: 949 LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAG 988



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 39/331 (11%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+  +L+    N  + + + ++  ++  G+   +V Y  +I  LC+ GR+  A
Sbjct: 374 DQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 433

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  E+   G  P   +Y +++    +  ++   LE+   M   G   +G+ +   I  
Sbjct: 434 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINY 493

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K G   +A    E M + G+  D+V+ N ++    K G+L  A  +  E++  G   D
Sbjct: 494 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 553

Query: 185 KYTHTI-----------------------------------LIDGLCKAGNIKGARLHLE 209
             T+T+                                   LID L KAG    A     
Sbjct: 554 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFY 613

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAK 265
            + ++  +     YN ++  LG++GK+   +++ E M       +  TY++++  LCK  
Sbjct: 614 QLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNG 673

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +  A  +L S    G     S+   V+ GL
Sbjct: 674 AVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 704



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 1/162 (0%)

Query: 9    CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
            CT  +NI+LNG      T+    +F+ +   G  P++ +Y I+I  LCKAG+L       
Sbjct: 974  CT-IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYF 1032

Query: 69   KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
            ++L + G  P+ ITY  ++    ++++ +  + + + M++KG   + + Y ++I    K 
Sbjct: 1033 RQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKA 1092

Query: 129  GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
            G+  EA    E+++T G + ++ +YN LI  Y   G  ++AY
Sbjct: 1093 GKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAY 1134



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 131/302 (43%), Gaps = 4/302 (1%)

Query: 16   MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
            ++ G+ K   T+ ++     +   G   +      LIK LCK  +   A  ++K+    G
Sbjct: 770  LMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFG 829

Query: 76   HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             +    +Y +++          +   + + MK  G   D F Y  ++ A  K  R++E  
Sbjct: 830  VSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEML 889

Query: 136  DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
               E+M   G +   V+YNT+I+   K  +LE A  L   +  QGF     T+  L+DGL
Sbjct: 890  KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGL 949

Query: 196  CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
             KAG I+ A      M + G  +N   YN +++     G  +   ++F+ M  +    D 
Sbjct: 950  LKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDI 1009

Query: 252  FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311
             +Y+ ++  LCKA +L          L+ G+         ++DGL  S    EA  + ++
Sbjct: 1010 KSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNE 1069

Query: 312  IR 313
            ++
Sbjct: 1070 MQ 1071



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P   T+N++++GL K++  + A+ +F  +QK G VP L TYN LI  L KAG+   A 
Sbjct: 1040 LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAG 1099

Query: 66   WILKELGDSGHAPNAITYTTIMK 88
             + +EL   G  PN  TY  +++
Sbjct: 1100 KMYEELLTKGWKPNVFTYNALIR 1122


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 143/277 (51%), Gaps = 5/277 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKE 70
            ++ M++   ++     AL++F+ ++K G  P L+TYN +I    K G  L+ A  I +E
Sbjct: 236 AYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEE 295

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+ IT+ +++  C R   ++    + + M+R+G   D F Y T+I A  K G+
Sbjct: 296 MQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQ 355

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++ A   M  M    +  ++V+Y+T+I+ Y K G  E A  L  +M++ G   D+ ++  
Sbjct: 356 MELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNT 415

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           LID   K G    A    + M ++G  +++  YN ++D  GK GK   A  +F+ M+   
Sbjct: 416 LIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEG 475

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            V +  TYS+++    KA     A+ + +   ++G++
Sbjct: 476 LVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLK 512



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 138/285 (48%), Gaps = 13/285 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTA 64
           P   T+N +++  C     D   AL +F  +QK G  P+ +T+N LI  +C  G L   +
Sbjct: 267 PNLITYNTIIDA-CGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLI-AVCSRGSLWEDS 324

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           + +  E+   G   +  TY T++    +  + +L   I+S+M+ K  + +   Y T+I  
Sbjct: 325 QRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDG 384

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K+G  +EA      M   GV+ D VSYNTLI++Y K G+ + A     +ME+ G + D
Sbjct: 385 YGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKAD 444

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  LID   K G  K A    + M   G   N+  Y+ ++D   K G    A ++F 
Sbjct: 445 VVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIF- 503

Query: 245 SMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +E K      D   YSS++ + CK   +  A  LL    ++G++
Sbjct: 504 -VEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQ 547



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++ +CK    + A  +   ++     P +VTY+ +I G  K G    A  +  ++
Sbjct: 342 TYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDM 401

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +SG  P+ ++Y T++    +  ++   L     M+R G   D   Y  +I A+ K G+ 
Sbjct: 402 KESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKY 461

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           K+A    ++M  +G+  ++++Y+ LI+ Y K G  + A  +  E ++ G + D   ++ L
Sbjct: 462 KDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSL 521

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH--------AINVF 243
           ID  CK G ++ A + L+ M + G   N+  YN ++D  G++G++D+         INVF
Sbjct: 522 IDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVF 581



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 137/285 (48%), Gaps = 19/285 (6%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P   T++ M++G  K    + A+ ++  +++ G  P+ V+YN LI    K GR   A
Sbjct: 370 NISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDA 429

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
               K++   G   + +TY  ++    +  KYK    +   MK +G   +   Y  +I A
Sbjct: 430 LTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDA 489

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K G  ++AT    +    G++ D+V Y++LI+  CK G +E A +LL EM + G + +
Sbjct: 490 YSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPN 549

Query: 185 KYTHTILIDGLCKAG---NIKGAR--LHLEYMNKIGFDS------NLEAYNCIVDRLGKD 233
             T+  LID   + G   N++ A+  + +   NK+G  S       L +     D  G  
Sbjct: 550 IVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTG-- 607

Query: 234 GKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
             +  A++VF  M+      +  T+S++++   +   L  AS LL
Sbjct: 608 --VLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVLL 650


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 153/313 (48%), Gaps = 8/313 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+ + +   C+    D+A  ++  + + G +P++VT + L+ GLCK GR   A 
Sbjct: 240 VEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAY 299

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+   G APN +TY  ++    + ++    L +L  +  +G   D   Y  ++   
Sbjct: 300 ALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWL 359

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++ EA D     ++D    + V+Y  LI+  CK G ++ A  +L EME++    + 
Sbjct: 360 CKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNV 419

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR----LGKDGKID--HA 239
            T + +I+GL K G +  A  ++  M + G D N+  Y  ++D     LG++  +D  H 
Sbjct: 420 VTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHE 479

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + + E +EV + F   S+V+ L K  ++  A  L     + GV +       ++DGL  +
Sbjct: 480 M-LCEGVEV-NKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKT 537

Query: 300 GCRREAKKIQSKI 312
           G    A K+  ++
Sbjct: 538 GNLPAAFKVGQEL 550



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 150/343 (43%), Gaps = 41/343 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N M+    +   T  AL++  G+++    P L+TY+ LI GL +AG +  A+
Sbjct: 590 LKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAK 649

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI----------------------- 102
           ++L E+  SG +P ++T+  +++ C + R+  L LEI                       
Sbjct: 650 YLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVL 709

Query: 103 ------------LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                       L  M  +G   D   +  +I    K G L  A    +QM+  G+  ++
Sbjct: 710 CYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNV 769

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN-IKGARLHLE 209
            ++NTL+      G++  + ++L+EM+K+G E    T+ IL+ G  K  N ++  RL+ E
Sbjct: 770 ATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCE 829

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            + K GF   +  YN ++    K G +  A  +F  M+    +  S TY  +V    K +
Sbjct: 830 MVGK-GFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLR 888

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
                 K L    + G    K    ++       G   EA+++
Sbjct: 889 NGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEARRL 931



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 144/310 (46%), Gaps = 4/310 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  +++ LCK    D A  MFR        P  VTY +LI  LCKAG +  A  +L E+ 
Sbjct: 352 YTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEME 411

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           +   +PN +T+++I+    +        + +  MK +G   +   Y TVI    K    +
Sbjct: 412 EKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQE 471

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A D   +M+ +GV+++    ++L+N   K GK+E A  L  EM ++G   D   +T LI
Sbjct: 472 AALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLI 531

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           DGL K GN+  A    + + +     +   YN  ++ L   GK   A +  E M+     
Sbjct: 532 DGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLK 591

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++M+    +  +   A KLL    +S ++        ++ GL  +G   +AK +
Sbjct: 592 PDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYL 651

Query: 309 QSKIRMAKIS 318
            +++  +  S
Sbjct: 652 LNEMSSSGFS 661



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 4/279 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+ ++++ LCK    D A ++   +++    P +VT++ +I GL K G +  A  
Sbjct: 381 TPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATD 440

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            ++E+ + G  PN +TY T++   F+    +  L++   M  +G   + F   +++    
Sbjct: 441 YMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLK 500

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G++++A     +M   GV LD V+Y TLI+   K G L AA+ +  E+ ++    D  
Sbjct: 501 KNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAV 560

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + + I+ LC  G  K A   LE M   G   +   YN ++    ++GK   A+ +   M
Sbjct: 561 VYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGM 620

Query: 247 E---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +   +K +  TYS+++  L +A  +  A  LL     SG
Sbjct: 621 KRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSG 659



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 150/335 (44%), Gaps = 39/335 (11%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N +++G CK    + A  +   ++  G   ++V YN L+ GLC+AG +  AR ++  + 
Sbjct: 177 WNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMK 236

Query: 73  DSGHAPNAITYTT-IMKCCFRNR----------------------------------KYK 97
             G  PN +TYT  I++ C RN                                   ++ 
Sbjct: 237 RDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFS 296

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
               +   M++ G   +   YC +I    K  R  E+   + ++V+ GV +D++ Y  L+
Sbjct: 297 EAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALM 356

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +  CKEGK++ A  +           +  T+T+LID LCKAGN+ GA   L  M +    
Sbjct: 357 DWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSIS 416

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
            N+  ++ I++ L K G +  A +    M+ +    +  TY +++    K     +A  +
Sbjct: 417 PNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDV 476

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
               L  GV + K    ++V+GL+ +G   +A+ +
Sbjct: 477 YHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEAL 511



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 143/297 (48%), Gaps = 10/297 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP--ELVTYNILIKGLCKAGRLRTARWILK 69
           T N +L GLC++   D A  +   + + G +   ++V +N L+ G CK G + TA  + +
Sbjct: 139 TVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAE 198

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G   + + Y +++    R  +     +++  MKR G   +   Y   I  + +  
Sbjct: 199 RMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRN 258

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            + +A    E+MV  GV  D+V+ + L+   CK+G+   AY L  EMEK G   +  T+ 
Sbjct: 259 AVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYC 318

Query: 190 ILIDGLCKA--GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +LID L KA  GN +   L  E +++ G   +L  Y  ++D L K+GKID A ++F    
Sbjct: 319 MLIDTLAKAQRGN-ESLSLLGEVVSR-GVVMDLIMYTALMDWLCKEGKIDEAKDMFRHAL 376

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                 +  TY+ ++  LCKA  +  A ++L    +  +        ++++GL   G
Sbjct: 377 SDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRG 433



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 153/356 (42%), Gaps = 39/356 (10%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP----------------- 43
           M+   + P   T + ++ GLCK+     A  +FR ++K G  P                 
Sbjct: 270 MVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQR 329

Query: 44  ------------------ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                             +L+ Y  L+  LCK G++  A+ + +      H PN +TYT 
Sbjct: 330 GNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTV 389

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    +        ++LS M+ K  + +   + ++I   VK G + +ATDYM +M   G
Sbjct: 390 LIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERG 449

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  ++V+Y T+I+   K    EAA  +  EM  +G E +K+    L++GL K G I+ A 
Sbjct: 450 IDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAE 509

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
                MN+ G   +   Y  ++D L K G +  A  V + +  K    D+  Y+  ++ L
Sbjct: 510 ALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCL 569

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           C   +   A   L     +G++  +     ++      G   +A K+ + ++ + I
Sbjct: 570 CMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSI 625



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 144/318 (45%), Gaps = 6/318 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C  +       + ++NGL KN   + A  +FR + + G + + V Y  LI GL K G 
Sbjct: 480 MLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGN 539

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  + +EL +    P+A+ Y   + C     K K     L  M+  G   D   Y T
Sbjct: 540 LPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNT 599

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IAA  + G+  +A   +  M    ++ ++++Y+TLI    + G +E A  LL+EM   G
Sbjct: 600 MIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSG 659

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHL-EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           F     TH  ++   C  G      L + E+M   G  +++  YN +V  L  +G    A
Sbjct: 660 FSPTSLTHRRVLQA-CSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKA 718

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + V E M       D+ T+++++    K+  L +A       L  G+    +    ++ G
Sbjct: 719 MVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGG 778

Query: 296 LRHSGCRREAKKIQSKIR 313
           L  +G   E+  + ++++
Sbjct: 779 LESAGRIGESDMVLNEMK 796



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 129/296 (43%), Gaps = 39/296 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY----------------- 48
           ++P   TF+ ++NGL K  +   A    R +++ G  P +VTY                 
Sbjct: 415 ISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAAL 474

Query: 49  ------------------NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
                             + L+ GL K G++  A  + +E+ + G   + + YTT++   
Sbjct: 475 DVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGL 534

Query: 91  FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           F+        ++   +  K    D   Y   I     +G+ KEA  ++E+M + G++ D 
Sbjct: 535 FKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQ 594

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           V+YNT+I    +EGK   A  LL+ M++   + +  T++ LI GL +AG ++ A+  L  
Sbjct: 595 VTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNE 654

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
           M+  GF      +  ++    +  + D  + + E M       D   Y+++V  LC
Sbjct: 655 MSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLC 710



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 134/313 (42%), Gaps = 4/313 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P    +N+ +N LC    +  A      +Q  G  P+ VTYN +I    + G+   A
Sbjct: 554 NLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKA 613

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L  +  S   PN ITY+T++   F     +    +L+ M   G++     +  V+ A
Sbjct: 614 LKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQA 673

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             +  R     +  E M+  G+  DI  YNTL+ + C  G    A ++L+EM  +G   D
Sbjct: 674 CSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPD 733

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T   LI G  K+G++  A    + M   G   N+  +N ++  L   G+I  +  V  
Sbjct: 734 TITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLN 793

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+ +     + TY  +V    K      A +L    +  G     S   A++      G
Sbjct: 794 EMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVG 853

Query: 301 CRREAKKIQSKIR 313
              +AK++ ++++
Sbjct: 854 MMSQAKELFNEMQ 866



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 144/316 (45%), Gaps = 9/316 (2%)

Query: 10  TATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           T ++N++++G   +      AL     + K G   + VT N ++ GLC+ GR+  A  + 
Sbjct: 103 TVSYNVVMSGFSEQGGLAPEAL--LAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALA 160

Query: 69  KELGDSG--HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           + +   G     + + + +++    +    +    +   MK +G   D  GY +++A   
Sbjct: 161 EVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLC 220

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G +  A D ++ M  DGV+ ++V+Y   I  YC+   ++ A+ L +EM ++G   D  
Sbjct: 221 RAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVV 280

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T + L+ GLCK G    A      M KIG   N   Y  ++D L K  + + ++++   +
Sbjct: 281 TLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEV 340

Query: 247 ----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                V D   Y++++  LCK  ++  A  +    L             ++D L  +G  
Sbjct: 341 VSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNV 400

Query: 303 REAKKIQSKIRMAKIS 318
             A+++ S++    IS
Sbjct: 401 DGAEQVLSEMEEKSIS 416



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 4/233 (1%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           +C D+T     +N ++  LC N  T  A+ +   +   G  P+ +T+N LI G  K+G L
Sbjct: 695 LCADIT----VYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHL 750

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A     ++   G +PN  T+ T++       +      +L+ MK++G       Y  +
Sbjct: 751 DNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDIL 810

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           +  + K     EA     +MV  G    + +YN LI+ + K G +  A  L +EM+ +G 
Sbjct: 811 VTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGV 870

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
                T+ IL+ G  K  N    R  L+ M + GF  +    + I     K G
Sbjct: 871 LPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPG 923



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 42/218 (19%)

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS------------ 152
           A+ R   + D   Y  V++ F + G L      + +M   GV  D V+            
Sbjct: 93  ALLRSSESVDTVSYNVVMSGFSEQGGLAPEA-LLAEMCKRGVPFDAVTVNTVLVGLCRDG 151

Query: 153 -------------------------YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                                    +N+L++ YCK G +E A+ + + M+ QG   D   
Sbjct: 152 RVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVG 211

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+ GLC+AG +  AR  ++ M + G + N+  Y   +    +   +D A +++E M 
Sbjct: 212 YNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMV 271

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            K    D  T S++V  LCK  R   A  L     K G
Sbjct: 272 RKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIG 309



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P  +T+N +++   K      A  +F  +Q  G +P   TY+IL+ G  K   
Sbjct: 830 MVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRN 889

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKC 89
               R  LK++ + G +P+  T ++I + 
Sbjct: 890 GTEVRKFLKDMKEKGFSPSKGTLSSISRA 918


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 128/280 (45%), Gaps = 7/280 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHG---FVPELVTYNILIKGLCKAGRLRTARWIL 68
           ++NI+L GLC  +  + AL +   +   G     P +VTY  +I GLCKA  +  A+ + 
Sbjct: 166 SYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVF 225

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           + + D G  PN  TYT ++       K+K  +++L  M   G   D   Y  ++    K 
Sbjct: 226 QHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKN 285

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           GR  EA +  + ++  G++  +  Y  L++ Y  EG L   +  LD M + G   D +  
Sbjct: 286 GRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIF 345

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-- 246
            I+ +   K   I  A    + M +      +  Y  ++D L K G++D A+  F  M  
Sbjct: 346 NIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMIN 405

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
                D F +SS+V+ LC   +   A KL    L  G+R+
Sbjct: 406 EGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRL 445



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + ++L+ LCKN     A  +F  L + G  P +  Y IL+ G    G L    
Sbjct: 268 LQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMH 327

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L  +  +G +P+   +  +     +       + I   M+++  +     Y  +I A 
Sbjct: 328 SFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDAL 387

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+GR+ +A     QM+ +GV  DI  +++L+   C   K E A  L  E+  QG   + 
Sbjct: 388 CKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNA 447

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA---INV 242
               IL+  LC+ G +  A+  ++ M ++    ++ +YN +VD     G+ID A   ++V
Sbjct: 448 AFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDV 507

Query: 243 FESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
             S+ +K D FTY++++H  CKA+R+  A  L    L  G+         ++ GL   G 
Sbjct: 508 MVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGR 567

Query: 302 RREAKKI 308
             EAK++
Sbjct: 568 FCEAKEL 574



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 135/280 (48%), Gaps = 4/280 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P    FNIM N   K    D A+ +F  +++    P +V Y  LI  LCK GR
Sbjct: 333 MVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGR 392

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     ++ + G  P+   +++++       K++   ++   +  +G   +   +  
Sbjct: 393 VDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNI 452

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + GR+ EA   ++ M+   V+ D++SYNTL++ +C  G+++ A  LLD M   G
Sbjct: 453 LMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIG 512

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D++T+  L+ G CKA  I  A      M   G    +  YN I+  L + G+   A 
Sbjct: 513 LKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAK 572

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
              +N+  +    D +TY+ +++ LC+   +  A K+  S
Sbjct: 573 ELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQS 612



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 141/310 (45%), Gaps = 6/310 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G  TP   T+  +++GLCK +  D A  +F+ +   G  P   TY  LI G    G+ + 
Sbjct: 196 GSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKE 255

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              +L+E+   G  P+ + Y  ++    +N +      I  ++ RKG       Y  ++ 
Sbjct: 256 VVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLH 315

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            +   G L E   +++ MV +GV  D   +N + N Y K+  ++ A  + D+M +Q    
Sbjct: 316 GYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSP 375

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
               +  LID LCK G +  A L    M   G   ++  ++ +V  L    K + A  +F
Sbjct: 376 GVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLF 435

Query: 244 -----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
                + + +  +F ++ ++ NLC+  R+  A +L+   L+  VR    +   +VDG   
Sbjct: 436 FEVLDQGIRLNAAF-FNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCL 494

Query: 299 SGCRREAKKI 308
           +G   EA K+
Sbjct: 495 TGRIDEAAKL 504



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 141/334 (42%), Gaps = 39/334 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P    +  +++ LCK    D+A+  F  +   G  P++  ++ L+ GLC   +   A 
Sbjct: 373 LSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAE 432

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G   NA  +  +M    R  +      ++  M R     D   Y T++   
Sbjct: 433 KLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGH 492

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF---- 181
              GR+ EA   ++ MV+ G++ D  +YNTL++ YCK  +++ AY L  EM  +G     
Sbjct: 493 CLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGV 552

Query: 182 -------------------------------ECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                                          +CD YT+TI+++GLC+   +  A    + 
Sbjct: 553 VTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQS 612

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           +       ++   N ++  L K G+ + A+++F ++     V D  TY  +  NL K   
Sbjct: 613 LCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGS 672

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           L    +L  +  ++G         A+V  L H G
Sbjct: 673 LEELDELFSAMEENGTAPNSRMLNALVRWLLHRG 706



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 2/222 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +L+G CK R  D+A  +FR +   G  P +VTYN ++ GL + GR
Sbjct: 508 MVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGR 567

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +   + ++    +  TYT I+    RN       ++  ++  K    D F    
Sbjct: 568 FCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINI 627

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A +K GR ++A D    +   G+  D+ +Y  +     KEG LE    L   ME+ G
Sbjct: 628 MIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENG 687

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
              +      L+  L   G+I  A ++L  +++  F  +LEA
Sbjct: 688 TAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKNF--SLEA 727



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 124/275 (45%), Gaps = 21/275 (7%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-------GHAPN 79
           D+AL++F  +  +     + T+N L+  + +A R  +A  ++  L +          AP+
Sbjct: 33  DDALKLFDEMLTYARPASVRTFNRLLTVVSRA-RCSSASELVVSLFNRMIRECSVKVAPS 91

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG---FGYCTVIAAFVKIGRLKEATD 136
           + TYT ++ C  R  + K G      + + G++ +    FG   ++       R+ EATD
Sbjct: 92  SCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFG--QLLKGLCDAKRVDEATD 149

Query: 137 -YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---FECDKYTHTILI 192
             + +M   G  L+++SYN L+   C E + E A  L+  M   G      +  T+T +I
Sbjct: 150 ILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVI 209

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           DGLCKA  +  A+   ++M   G   N   Y C++      GK    + + + M      
Sbjct: 210 DGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQ 269

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            D   Y+ ++  LCK  R   A  +  S ++ G++
Sbjct: 270 PDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIK 304


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 161/334 (48%), Gaps = 49/334 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +++G C+ +  D A  +   ++ + FVP++ TY+ILI GLC+A RL  AR +L  L
Sbjct: 294 TYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTL 353

Query: 72  GDSGH-APNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            +     PN ++Y T++    K    N  Y+L LE+++A    G   D   Y T+I    
Sbjct: 354 RNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTA----GQHPDVVTYSTLIRGLC 409

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             GR  EA  Y+E+MV   +   +  Y+++I+  C+ G+L+AA  + D M   G + +  
Sbjct: 410 NAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLA 469

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF--- 243
            +  LI GLCK G +  A+L ++ M + G   +   Y  ++  L +  + D A +++   
Sbjct: 470 VYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRS 529

Query: 244 --ESMEVKDS-------------------------------FTYSSMVHNLCKAKRLPSA 270
             + +E+ ++                               F Y++++ +LCK   L  A
Sbjct: 530 LEQGIEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEA 589

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
            +LL   + +G++       + VD L  + CR++
Sbjct: 590 RQLLEDMIGAGIK----PDGSTVDALVGAMCRQD 619



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 13/305 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T   +LN LCK+   + ALR F   +K   +P   T+ ILI GL +A R
Sbjct: 151 MVDRGLRPVVLTCKFLLNALCKSGNLELALRYF---EKMSSIPCAATWTILIDGLFRAIR 207

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A +  +E+  +   PN  TYT ++    +  K      +L  M           Y +
Sbjct: 208 VDEACYYFEEMKHTA-IPNNWTYTVVINGLVKAGKVAEAERVLQEMPVPTLA----NYTS 262

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    K G + +A   +E M   G Q D ++YNTLI+ +C+  +++ AY LL+EM+   
Sbjct: 263 VIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSND 322

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           F  D +T+ ILI GLC+A  +  AR  L  + N+     N+ +YN ++D   K  +++ A
Sbjct: 323 FVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDA 382

Query: 240 INVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F  M    +  D  TYS+++  LC A R   A   L   +   +        +V+ G
Sbjct: 383 YQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISG 442

Query: 296 LRHSG 300
           L  +G
Sbjct: 443 LCRAG 447



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 154/351 (43%), Gaps = 39/351 (11%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    ++ +++GLC+    D A  +F  +  +G  P L  YN LI GLCK GR
Sbjct: 424 MVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGR 483

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM-----------KCCFRNRKYKLGLEI------- 102
           L  A+  +KE+ + G +P+ +TY T++            C    R  + G+EI       
Sbjct: 484 LCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNV 543

Query: 103 --------------LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                         L  +   G +   F Y TVI +  K   L EA   +E M+  G++ 
Sbjct: 544 VIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKP 603

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D  + + L+   C++ K   A   L+EM + G +    T++ L++ L KAG    A + L
Sbjct: 604 DGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVL 663

Query: 209 EYM--NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
             +  +   F   L     I     +D +++ A NV + ++    ++    Y++++  L 
Sbjct: 664 RRLISHTSCFPDELWYVGLIAAYSNQD-QVEEARNVLQELKSKWGIQSIVAYNTLLKGLF 722

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           + + L    +LL    ++   + ++    ++ G    G    A ++ S+++
Sbjct: 723 RTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMK 773



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 12/286 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T++ ++ GLC       A      +     +P++  Y+ +I GLC+AG 
Sbjct: 389 MVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGE 448

Query: 61  LRTARWILKELGDSGHAPNAITYTT-IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A  +   +  +G  PN   Y + I   C   R     L +   M  +G + DG  Y 
Sbjct: 449 LDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRV-KEMTERGCSPDGVTYG 507

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI-NLYCKEGKLEAAYLLLDEMEK 178
           T+I    +  R  EA D   + +  G+++   S N +I +L C    LE A  +L  +  
Sbjct: 508 TLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRC----LEQAQRVLRVVLA 563

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G     + +  +I+ LCK  N+  AR  LE M   G   +    + +V  + +  K   
Sbjct: 564 TGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVV 623

Query: 239 AINVFESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKS 280
           A+   E M     K S  TYS++++ L KA + PS + ++L  L S
Sbjct: 624 AMAFLEEMVRLGSKPSVGTYSTLLNALFKAGK-PSEAHVVLRRLIS 668



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 3/210 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +  ++  LCK      A ++   +   G  P+  T + L+  +C+  +   A  
Sbjct: 567 SPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMA 626

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAF 125
            L+E+   G  P+  TY+T++   F+  K      +L  +      F D   Y  +IAA+
Sbjct: 627 FLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAY 686

Query: 126 VKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               +++EA + ++++ +  G+Q  IV+YNTL+    +   L+  Y LL EM++  F  +
Sbjct: 687 SNQDQVEEARNVLQELKSKWGIQ-SIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVN 745

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           + T  ILI G C+ G    A   L  M K+
Sbjct: 746 EATFNILIQGFCRLGQTDRAVRVLSEMKKV 775


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  +   L ++G+ +D    + E + V   
Sbjct: 319 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    + G
Sbjct: 379 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 411



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 119/242 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 227 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A   +++M   G++ D ++Y TLI+  CKEG L++A+     M ++    D+
Sbjct: 287 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T L  GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 347 VAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 116/216 (53%), Gaps = 2/216 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 197 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K    ++  M  KG   D   Y T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  L +  C+EG+   A  +L EM   G
Sbjct: 317 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIG 215
            + D  T+T++I+  CK G++ KG++L L+ M + G
Sbjct: 377 LKPDARTYTMIINEFCKKGDVWKGSKL-LKEMQRDG 411



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 227 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 287 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL-D 345

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y+++   LC+  R   A K+L   L  G++
Sbjct: 346 EVAYTALXSGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  + +GLC+   + +A +M R +   G  P+  TY ++I   CK G +     +LKE
Sbjct: 347 VAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GH P+ +T
Sbjct: 407 MQRDGHVPSVVT 418


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 150/289 (51%), Gaps = 8/289 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P T TFN+++  LC +   D+A  +F  + + G  P   ++ IL++G C+AG 
Sbjct: 47  MVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGF 106

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 +L E+   G +PN + Y T++    +  K     +++  M++ G + D   +  
Sbjct: 107 TSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNA 166

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGV----QLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            I+A    G++ EA+     M  D V    Q +I++YN ++  +CKEG LE A  L ++M
Sbjct: 167 RISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKM 226

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           +      ++ ++ I + GL + G +  A+L L+ M  +G + N+ +YN ++D L K+G +
Sbjct: 227 KVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVL 286

Query: 237 DHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             A  +   M     + D+ TY++++H  C   ++  A+ +L   ++ G
Sbjct: 287 FDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDG 335



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 139/309 (44%), Gaps = 27/309 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   ++NI+++GLCKN    +A  + R +   G +P+ VTY  L+ G C  G+
Sbjct: 261 MVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGK 320

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+E+   G +PN  T   ++   ++  +     E+L  M  KGY  D      
Sbjct: 321 VSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNI 380

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQL-----------------------DIVSYNTLI 157
           VI      G+L +A + +  M T G                          D++SY+T+I
Sbjct: 381 VIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTII 440

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           +  CK G++  A     EM  +  + D   + + I   CK G I  A   L+ M K G +
Sbjct: 441 SGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCN 500

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
             L+ YN ++  LG   +I     + + M  +    D   Y++++ +LC+  R+  A  +
Sbjct: 501 KTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSV 560

Query: 274 LLSCLKSGV 282
           L   L+ G+
Sbjct: 561 LDEMLQKGI 569



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 152/332 (45%), Gaps = 32/332 (9%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-----------------------VPELV 46
           T T NI+++GLC N   D A+ +  G+  HG                        +P+L+
Sbjct: 375 TVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLI 434

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           +Y+ +I GLCKAGR+  A+    E+      P++  Y   +    +  K      +L  M
Sbjct: 435 SYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDM 494

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           ++KG       Y ++I       ++ E    +++M   GV  D+  YN +++  C+ G++
Sbjct: 495 EKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRV 554

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY-MNKIGFDSNLEAYNC 225
           + A  +LDEM ++G   +  + +ILI   CKA +        E  +N  G    L  Y+ 
Sbjct: 555 KDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEAL--YSL 612

Query: 226 IVDRLGKDGKIDHAINVFE-----SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
             + L   G++  A  +FE     S +V + F Y  ++ +LCK ++L  AS +L   +  
Sbjct: 613 TFNELLVGGEVVKAKELFETALDRSFDVGN-FLYKDLIDHLCKDEKLDDASGILHKLIDK 671

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           G     ++   V+DGL   G + EA ++  K+
Sbjct: 672 GYWFDPASFMPVIDGLGKRGNKHEADELAEKM 703



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 145/334 (43%), Gaps = 27/334 (8%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++NI L GL +      A  + + +   G  P + +YNI++ GLCK G L  AR +++ +
Sbjct: 237 SYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLM 296

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG  P+ +TYTT++       K      +L  M R G + + +    ++ +  K GR+
Sbjct: 297 TSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRI 356

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-------- 183
            EA + +++M   G  +D V+ N +I+  C  GKL+ A  +++ M   G           
Sbjct: 357 SEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSY 416

Query: 184 ---------------DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
                          D  +++ +I GLCKAG +  A+     M       +   Y+  + 
Sbjct: 417 IGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIH 476

Query: 229 RLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
              K+GKI  A  V + ME K       TY+S++  L    ++     L+    + GV  
Sbjct: 477 SFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSP 536

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
             S    V+  L   G  ++A  +  ++    IS
Sbjct: 537 DVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGIS 570



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 1/246 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L P +A +++ ++  CK     +A R+ + ++K G    L TYN LI GL    +
Sbjct: 459 MMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQ 518

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     ++ E+ + G +P+   Y  ++       + K    +L  M +KG + +   +  
Sbjct: 519 IFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSI 578

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I AF K      A D + ++  +        Y+   N     G++  A  L +    + 
Sbjct: 579 LIKAFCKACDFS-AVDEIFEIALNVCGHKEALYSLTFNELLVGGEVVKAKELFETALDRS 637

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F+   + +  LID LCK   +  A   L  +   G+  +  ++  ++D LGK G    A 
Sbjct: 638 FDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEAD 697

Query: 241 NVFESM 246
            + E M
Sbjct: 698 ELAEKM 703


>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
 gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
          Length = 534

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 17/291 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           M      P  AT+N++L   C +   D  +ALR+FR + K    P++ +YN +I GLC+ 
Sbjct: 154 MRAAGFAPTAATYNVLLKAQCSDAAADIKDALRLFRNIPK----PDVCSYNTIIDGLCRR 209

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           GRL  A  +  E+     AP  +TYTT++    R   +   L+I   M R+G + +   Y
Sbjct: 210 GRLAAALEMFSEMVGKCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTY 269

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            ++I    K GR   A + M++M+ +    + ++Y+++I+  CKE  L  A  +LD M  
Sbjct: 270 SSLIDGLCKGGRAASALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRL 329

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY-------NCIVDRLG 231
           QG + D      LI GLC AG    A  +L+ M   G + N   +       N ++  L 
Sbjct: 330 QGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMILAGIEPNRVTWSLHTRINNTVLTALC 389

Query: 232 KDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
             G++  A  V++S   +    D  T+  +V +  K K +  A+ ++L  L
Sbjct: 390 AKGELGRAFQVYQSTRTRSISTDPTTFHLLVESFSKKKNMEKAAHVVLDML 440



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 111/285 (38%), Gaps = 17/285 (5%)

Query: 41  FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI----TYTTIMKCCFRNRKY 96
             P   T ++L   L  AG L  A  +L      G  P+       +  +++   R  + 
Sbjct: 51  ITPSPATVSLLTSRLASAGHLPLATSLLSR--SRGVFPSVAALEPPFLGLLRAFSRTHRP 108

Query: 97  KLGLEIL-SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
              L +  SA            Y  V+AA V    L  A   +  M   G      +YN 
Sbjct: 109 LAALHLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNV 168

Query: 156 LINLYCKEGK--LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           L+   C +    ++ A  L   + K     D  ++  +IDGLC+ G +  A      M  
Sbjct: 169 LLKAQCSDAAADIKDALRLFRNIPKP----DVCSYNTIIDGLCRRGRLAAALEMFSEMVG 224

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
                 +  Y  ++  L ++G  D A+ +F+ M  +    +  TYSS++  LCK  R  S
Sbjct: 225 KCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLIDGLCKGGRAAS 284

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
           A +L+   +K           +V+DGL       EA ++  ++R+
Sbjct: 285 ALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRL 329


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 122/232 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P T T+NI++   C +    +A  +F  + K G +P++ TY+IL++GLC+  +++TA 
Sbjct: 234 ISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTAL 293

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L E+ + G+ P+A+TY T++    R    +    +LS MK  G   D   Y TVI  F
Sbjct: 294 GVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGF 353

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + GR  +A   +  M  +G   + +SY TL+N  C EGK + A   ++EM   GF    
Sbjct: 354 CREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHI 413

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
             + +LI GLC  G +  A   L  M K     +   ++ ++ R+ +D + +
Sbjct: 414 SIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRICEDSQTE 465



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 131/260 (50%), Gaps = 4/260 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN++L  L +++  + AL +F+ L + G  P   TYNILI+  C + +L  A ++
Sbjct: 201 PLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFL 260

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G  P+  TY+ +M+   R  + K  L +L  M  KGY  D   Y T++ +  +
Sbjct: 261 FNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCR 320

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              L+EA   + +M   G   D+++YNT+I  +C+EG+   A  +L +M + G   +  +
Sbjct: 321 KMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALS 380

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L++GLC  G    A+  +E M   GF  ++  Y+ ++  L  +GK+  A  V   M 
Sbjct: 381 YRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMT 440

Query: 248 ----VKDSFTYSSMVHNLCK 263
                    T+S ++  +C+
Sbjct: 441 KQTLAPHESTWSVLLMRICE 460



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 97/199 (48%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I++ GLC+      AL +   +   G+VP+ +TYN L+  LC+   LR A  +
Sbjct: 271 PDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRL 330

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G  P+ I Y T++    R  +     +IL  M   G   +   Y T++     
Sbjct: 331 LSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCN 390

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+  EA D++E+M+++G    I  Y+ LI   C EGK+  A  +L  M KQ     + T
Sbjct: 391 EGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHEST 450

Query: 188 HTILIDGLCKAGNIKGARL 206
            ++L+  +C+    +   L
Sbjct: 451 WSVLLMRICEDSQTEAREL 469



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 128/288 (44%), Gaps = 5/288 (1%)

Query: 37  QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96
           ++ GF     TY+ LI  L +A + +T   +++++   G       +  I++        
Sbjct: 125 RQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMP 184

Query: 97  KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
              ++    M   GY      +  ++   ++   L+ A    +++   G+  +  +YN L
Sbjct: 185 NEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNIL 244

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           I  +C   KL  AY L ++M KQG   D  T++IL+ GLC+   +K A   L+ M   G+
Sbjct: 245 IRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGY 304

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASK 272
             +   YN +++ L +   +  A  +   M+V     D   Y++++   C+  R   A +
Sbjct: 305 VPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQ 364

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK-IQSKIRMAKISH 319
           +L    ++G      + + +V+GL + G   EAK  ++  I    I H
Sbjct: 365 ILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPH 412



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 13/226 (5%)

Query: 98  LGLEILS-AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
           L +EI   A ++ G+      Y T+I    +  + K     ++QM  DG       +  +
Sbjct: 115 LAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDI 174

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           I +Y + G    A     +M + G+E       +L+  L +   ++ A    + +++ G 
Sbjct: 175 IEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGI 234

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
             N   YN ++       K+ HA  +F  M     + D  TYS ++  LC+  ++ +A  
Sbjct: 235 SPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALG 294

Query: 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCR----REAKKIQSKIRM 314
           +L   L  G            + L +S CR    REA ++ SK+++
Sbjct: 295 VLDEMLNKGY----VPDALTYNTLLNSLCRKMNLREAYRLLSKMKV 336


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 154/339 (45%), Gaps = 41/339 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T N +++GLCK +  D A  + + +     +P   TYN LI G   +G+   A 
Sbjct: 283 IPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAV 342

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ILKE+   G  PN +TY+ ++ C  ++  +    EI ++M + G   +   Y +++  +
Sbjct: 343 RILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGY 402

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L +  +  + MV +G++     +N  I  YCK G+L+ A L  ++M++QGF  D 
Sbjct: 403 ATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDI 462

Query: 186 YTHTILIDGLCKAGNI------------------------------------KGARLHLE 209
             +T +IDGLCK G +                                    K   L  E
Sbjct: 463 VAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYE 522

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            M++ G   N+  +N ++D+L K+GK+  A  +F+ M       +  +Y++M+H    A 
Sbjct: 523 MMDR-GIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAG 581

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
            +    KLL   L  G++        ++DG+   G + +
Sbjct: 582 EVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPD 620



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  +++G  K      A  +F  +  HG  P +VT N +I GLCK   +  A  +
Sbjct: 250 PNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 309

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++ D    PN  TY +++     + ++   + IL  M R G   +   Y  +I    K
Sbjct: 310 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCK 369

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G   EA +    M+  G + +  +Y +L++ Y  EG L     + D M + G    ++ 
Sbjct: 370 SGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHV 429

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
             I I   CK G +  A L    M + GF  ++ AY  ++D L K G++D A++ F  M 
Sbjct: 430 FNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMI 489

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D  T+++++H      +   A +L    +  G+    +   +++D L   G   
Sbjct: 490 DDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVT 549

Query: 304 EAKKI 308
           EA+K+
Sbjct: 550 EARKL 554



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 16/246 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI +   CK    D A   F  +Q+ GF+P++V Y  +I GLCK GR
Sbjct: 418 MVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGR 477

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A     ++ D G +P+ IT+ T++     + K++   E+   M  +G   +   + +
Sbjct: 478 LDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNS 537

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G++ EA    + M   G + ++VSYNT+I+ Y   G++     LLD+M   G
Sbjct: 538 MIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIG 597

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T   L+DG                M  +G   ++     ++D   +DG+I+  +
Sbjct: 598 LKPTAVTFNTLLDG----------------MVSMGLKPDVVTCKTLIDSCCEDGRIEDIL 641

Query: 241 NVFESM 246
            +F  M
Sbjct: 642 TLFREM 647



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           TF  +L  LC  + T +A+ +  R + + G  P++ +Y  L+KGLC   +   A  ++  
Sbjct: 181 TFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHM 240

Query: 71  LGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           + + G    PN ++YTT++   F+         +   M   G   +     +VI    K+
Sbjct: 241 MAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKV 300

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
             + +A   ++QM+ + +  +  +YN+LI+ Y   G+   A  +L EM + G   +  T+
Sbjct: 301 QAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTY 360

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           ++LID LCK+G    AR     M + G   N   Y  ++     +G +    NV + M V
Sbjct: 361 SMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLM-V 419

Query: 249 KDSFTYSSMVHNL-----CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++       V N+     CK  RL  AS       + G      A   V+DGL
Sbjct: 420 QNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGL 472



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 10/282 (3%)

Query: 29  ALRMFRGLQKHG---FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           A+ MF  + + G     P++ T+ ILI   C AG L      L ++  +G    A+T+T 
Sbjct: 125 AVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTP 184

Query: 86  IMKC-CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           +++  C   R       +L  M   G T D F Y T++       + +EA + +  M  D
Sbjct: 185 LLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAED 244

Query: 145 G--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
           G     ++VSY T+I+ + KEG +  AY L  +M   G   +  T   +IDGLCK   + 
Sbjct: 245 GDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMD 304

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMV 258
            A   L+ M       N   YN ++      G+   A+ + + M    +  +  TYS ++
Sbjct: 305 KAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLI 364

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             LCK+     A ++  S ++SG +   S   +++ G    G
Sbjct: 365 DCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEG 406



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 19/207 (9%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +  +++GLCK    D+A+  F  +   G  P+++T+N LI G    G+   A  +
Sbjct: 460 PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEEL 519

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+ D G  PN  T+ +++   F+  K     ++   M R G   +   Y T+I  +  
Sbjct: 520 FYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFI 579

Query: 128 IGRLKEATDYMEQM-------------------VTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G + E    ++ M                   V+ G++ D+V+  TLI+  C++G++E 
Sbjct: 580 AGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIED 639

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGL 195
              L  EM  +  + D  T  I + G+
Sbjct: 640 ILTLFREMLGKADKTDTITENIKLRGV 666


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 142/306 (46%), Gaps = 7/306 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T NI++N  C       A  +   + K G+ P   T+  LI+GLC  G++  A  +  
Sbjct: 45  TYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFD 104

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G  P+ +TY T++    ++R+    L + S M  KG + + F Y ++I     +G
Sbjct: 105 KMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILG 164

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA---AYLLLDEMEKQGFECDKY 186
             KEA      M+   +  D +++NTL++  CKEG ++    A  L +EM +QG   D  
Sbjct: 165 HWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTV 224

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  LI GLC  G ++ A      M   G   +L  Y  + D L K+ ++  A+ + + +
Sbjct: 225 TYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVI 284

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           E      D   YS ++  +C+A  L +A  L       G+         +++GL   G  
Sbjct: 285 EGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLL 344

Query: 303 REAKKI 308
            EA K+
Sbjct: 345 AEASKL 350



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 126/260 (48%), Gaps = 3/260 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  ++NGLCK+R    AL +F  +   G  P   TY+ LI GLC  G  + A  +
Sbjct: 113 PDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRL 172

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKL---GLEILSAMKRKGYTFDGFGYCTVIAA 124
              +      P+ +T+ T++    +    ++    + +   M ++G   D   Y T+I  
Sbjct: 173 FYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHG 232

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
              +GRL++A     +MV  G   D+V+Y  L +  CK  +L  A +LL  +E    + D
Sbjct: 233 LCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPD 292

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            + ++I++DG+C+AG ++ AR     ++  G   ++  Y  +++ L + G +  A  +F 
Sbjct: 293 IHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFG 352

Query: 245 SMEVKDSFTYSSMVHNLCKA 264
            M+  D  +YS+   N  K 
Sbjct: 353 EMDENDIESYSTFSRNAFKG 372



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 137/312 (43%), Gaps = 7/312 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ +L  + + ++    L +++ +   G      T NILI   C   RL  A  +
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G+ P+  T+TT+++      K    L++   M  +G+  D   Y T+I    K
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             +L EA      M+  G+  +  +Y++LI+  C  G  + A  L   M  +    D+ T
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 188 HTILIDGLCKAGNIK---GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              L+D LCK G I+    A    E M++ G   +   YN ++  L   G++  AI +F 
Sbjct: 188 FNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFH 247

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M    ++ D  TY  +   LCK  RL  A  LL     + +         V+DG+  +G
Sbjct: 248 EMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAG 307

Query: 301 CRREAKKIQSKI 312
               A+ + SK+
Sbjct: 308 ELEAARDLFSKL 319



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 3/185 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKN---RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 57
           MI   + P   TFN +++ LCK    +  D A+ +F  + + G +P+ VTYN LI GLC 
Sbjct: 176 MIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCH 235

Query: 58  AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
            GRLR A  +  E+   G  P+ +TY  +     +N +    + +L  ++      D   
Sbjct: 236 VGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHI 295

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y  V+    + G L+ A D   ++ + G+  D+ +Y  +IN  C++G L  A  L  EM+
Sbjct: 296 YSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMD 355

Query: 178 KQGFE 182
           +   E
Sbjct: 356 ENDIE 360


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 156/340 (45%), Gaps = 39/340 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++ LCKN     A +MF  + K G  PE+ TY  L++G    G L     +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +  +G  PN   ++ ++    +  K    + + S M+++G   D   Y TVI    K
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421

Query: 128 IGRLKEATDYMEQMVTD-----------------------------------GVQLDIVS 152
            GR+++A  Y EQM+ +                                   G+ LD + 
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           +N++I+ +CKEG++  +  L D M + G + +  T++ LIDG C AG +  A   L  M 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
            +G   +   YN +++   K  +++ A+ +F  ME      D  TY+ ++  L + +R  
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +A +L +   +SG ++  S    ++ GL  +    EA ++
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 155/331 (46%), Gaps = 46/331 (13%)

Query: 13  FNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK-- 69
           F  +L GLC ++ T +A+ +  R + + G +P + +YNIL+KGLC   R + A  +L+  
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 70  -----------------------------------ELGDSGHAPNAITYTTIMKCCFRNR 94
                                              E+ D G  PN +TY +I+    + +
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQ 248

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
                +E+L++M + G   +   Y +++  +   G+ KEA  ++++M +DGV+ D+V+YN
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +L++  CK G+   A  + D M K+G + +  T+  L+ G    G +      L+ M + 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           G   N   ++ ++    K GK+D A+ VF  M  +    D+ TY +++  LCK+ R+  A
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDA 428

Query: 271 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            +     +   +    S    V + L HS C
Sbjct: 429 MRYFEQMIDERL----SPGNIVYNSLIHSLC 455



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 145/312 (46%), Gaps = 9/312 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   ++  ++NG  K    D A   +  +   G +P +VTYN +I  LCKA  +  
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDK 252

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  PN  TY +I+     + + K  +  L  M   G   D   Y +++ 
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMD 312

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ +I +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + Y  +ILI    K G +  A L    M + G + +   Y  ++  L K G+++ A+  F
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M        +  Y+S++H+LC   +   A +L+L  L  G+ +      +++D    S
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID----S 488

Query: 300 GCRREAKKIQSK 311
            C +E + I+S+
Sbjct: 489 HC-KEGRVIESE 499



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 151/311 (48%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++  LCK +  D A+ +   + K+G +P   TYN ++ G C +G+ + A 
Sbjct: 230 ILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAI 289

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY ++M    +N +     ++  +M ++G   +   Y T++  +
Sbjct: 290 GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  +   ++ LI  Y K+GK++ A L+  +M +QG   D 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G ++ A  + E M           YN ++  L    K D A  +   
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILE 469

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    D+  ++S++ + CK  R+  + KL    ++ GV+        ++DG   +G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGK 529

Query: 302 RREAKKIQSKI 312
             EA K+ + +
Sbjct: 530 MDEATKLLASM 540



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++    K    D A+ +F  +++ G  P+ VTY  +I  LCK+GR
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D   +P  I Y +++       K+    E++  M  +G   D   + +
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    + MV  GV+ +I++Y+TLI+ YC  GK++ A  LL  M   G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + D  T+  LI+G CK   ++ A +    M   G   ++  YN I+  L +  +   A 
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + ES    +  TY+ ++H LCK      A ++  +   + +++       ++  L
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 665 LKVGRNDEAKDL 676



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 118/246 (47%), Gaps = 5/246 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ I++   C     D        + K GF  + + +  L+KGLC   R   A
Sbjct: 86  EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145

Query: 65  -RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCT 120
              +L+ +   G  PN  +Y  ++K  C  NR  +  LE+L  M   G     D   Y T
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE-ALELLQMMPDDGGDCPPDVVSYTT 204

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K G L +A     +M+  G+  ++V+YN++I   CK   ++ A  +L  M K G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  ++ G C +G  K A   L+ M+  G + ++  YN ++D L K+G+   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 241 NVFESM 246
            +F+SM
Sbjct: 325 KMFDSM 330



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 114/249 (45%), Gaps = 7/249 (2%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
            P L TY ILI   C AGRL      L  +   G   +AI +T ++K    +++    ++
Sbjct: 88  TPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMD 147

Query: 102 I-LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLIN 158
           I L  M + G   + F Y  ++       R +EA + ++ M  DG     D+VSY T+IN
Sbjct: 148 IVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            + KEG L+ AY    EM  +G   +  T+  +I  LCKA  +  A   L  M K G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           N   YN IV      G+   AI   + M       D  TY+S++  LCK  R   A K+ 
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 275 LSCLKSGVR 283
            S  K G++
Sbjct: 328 DSMTKRGLK 336



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +++G C     D A ++   +   G  P+ VTYN LI G CK  R+  A  +
Sbjct: 512 PNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+  SG +P+ ITY  I++  F+ R+     E+   +   G   +   Y  ++    K
Sbjct: 572 FREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA    + +    +QL+  ++N +I    K G+ + A  L   +   G   D  T
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRT 691

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           ++++ + L + G ++        M + G  +N    N IV +L + G I  A
Sbjct: 692 YSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 43/258 (16%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +++  CK      + ++F  + + G  P ++TY+ LI G C AG++  A  +L 
Sbjct: 479 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLA 538

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+ +TY T++                             GYC       KI 
Sbjct: 539 SMVSVGMKPDCVTYNTLIN----------------------------GYC-------KIS 563

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A     +M + GV  DI++YN ++    +  +  AA  L   + + G + +  T+ 
Sbjct: 564 RMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE--AYNCIVDRLGKDGKIDHAINVFESME 247
           I++ GLCK  N+    L + + N    D  LE   +N ++  L K G+ D A ++F ++ 
Sbjct: 624 IILHGLCK-NNLTDEALRM-FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681

Query: 248 ----VKDSFTYSSMVHNL 261
               V D  TYS M  NL
Sbjct: 682 ANGLVPDVRTYSLMAENL 699



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 2/222 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NG CK    ++AL +FR ++  G  P+++TYNI+++GL +  R
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +   + +SG      TY  I+    +N      L +   +       +   +  
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A +K+GR  EA D    +  +G+  D+ +Y+ +     ++G LE    L   ME+ G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
              +      ++  L + G+I  A  +L  +++  F  +LEA
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHF--SLEA 759



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 42/210 (20%)

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           M +   D V  ++ +Y  LI   C  G+L+  +  L  + K+GF  D    T L+ GLC 
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 198 AGNIKGA-RLHLEYMNKIGFDSNLEAYN-------------------------------- 224
                 A  + L  M ++G   N+ +YN                                
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPD 198

Query: 225 -----CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
                 +++   K+G +D A   +  M     + +  TY+S++  LCKA+ +  A ++L 
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLT 258

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           S +K+GV        ++V G   SG  +EA
Sbjct: 259 SMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 154/313 (49%), Gaps = 6/313 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I   ++P   ++N ++ G C+    + A ++++ +  +GF P  VT+ IL+ G  K G 
Sbjct: 393 VIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGD 452

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  I   + D+   P   T   I+K  C   R ++ G ++ +    +G+      Y 
Sbjct: 453 IENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFE-GRDLFNKFVSQGFVPTCMPYN 511

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I  F+K G +  A++   +M   G+    V+Y +LI+ +CK   ++ A  LL++M+++
Sbjct: 512 TIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRK 571

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D   +  LIDG CK  ++K A   L  +   G   N   YN ++        ++ A
Sbjct: 572 GLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEA 631

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           I++++ M  +    D  TY+S++  L K+ RL  AS +    L  G+     A   +++G
Sbjct: 632 IDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLING 691

Query: 296 LRHSGCRREAKKI 308
           L + G    A+KI
Sbjct: 692 LCNKGQFENARKI 704



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 133/295 (45%), Gaps = 39/295 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            ++ P   T  I++ GLCK   +     +F      GFVP  + YN +I G  K G +  
Sbjct: 466 ANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINL 525

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD--------- 114
           A  + +E+ + G  P+ +TYT+++    +     L L++L+ MKRKG   D         
Sbjct: 526 ASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLID 585

Query: 115 --------------------------GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                                      F Y ++I  F  +  ++EA D  ++MV +G+  
Sbjct: 586 GFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPC 645

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+ +Y +LI+   K G+L  A  +  EM  +G   D   HT+LI+GLC  G  + AR  L
Sbjct: 646 DLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKIL 705

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVH 259
           E MN      ++  YN ++    K+G +  A  + + M     V D+ TY  +V+
Sbjct: 706 EDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVN 760



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 134/305 (43%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN +L+ LCK    + A  ++  +   G  P +V+YN +I G C+   +  A  + KE+
Sbjct: 369 TFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEM 428

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D+G  PNA+T+T +M   F+    +    I   MK             +I    K GR 
Sbjct: 429 LDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRS 488

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            E  D   + V+ G     + YNT+I+ + KEG +  A  +  EM + G      T+T L
Sbjct: 489 FEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSL 548

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDG CK  NI  A   L  M + G   +++AY  ++D   K   +  A  +   +     
Sbjct: 549 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL 608

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             + F Y+SM+        +  A  L    +  G+        +++DGL  SG    A  
Sbjct: 609 SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASD 668

Query: 308 IQSKI 312
           I +++
Sbjct: 669 IHTEM 673



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 166/385 (43%), Gaps = 75/385 (19%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++    K      ALR+   +   G    L     L+KG C  G LR+A  +
Sbjct: 226 PPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVL 285

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDG------- 115
           + E+ +SG  PN +TY+ ++  C +N   +   E  S MK KG     Y+ +        
Sbjct: 286 VNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLK 345

Query: 116 ----------------------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
                                 F + T+++   K G++ EA +  ++++  G+  ++VSY
Sbjct: 346 CQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSY 405

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID-------------------- 193
           N +I  +C++  + AA  +  EM   GF  +  T TIL+D                    
Sbjct: 406 NNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKD 465

Query: 194 ---------------GLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
                          GLCKAG + +G  L  +++++ GF      YN I+D   K+G I+
Sbjct: 466 ANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQ-GFVPTCMPYNTIIDGFIKEGNIN 524

Query: 238 HAINVFESM-EV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            A NV+  M EV     + TY+S++   CK   +  A KLL    + G+++   A   ++
Sbjct: 525 LASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLI 584

Query: 294 DGLRHSGCRREAKKIQSKIRMAKIS 318
           DG       + A ++ +++R A +S
Sbjct: 585 DGFCKRRDMKSAHELLNELRGAGLS 609



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 128/305 (41%), Gaps = 5/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           + N +L G  K +   NA  MF    + G    + T+N L+  LCK G++  A  +  E+
Sbjct: 335 SLNSILEGYLKCQSWQNAFTMFNDALESGLA-NVFTFNTLLSWLCKEGKMNEACNLWDEV 393

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN ++Y  I+    R        ++   M   G+T +   +  ++  + K G +
Sbjct: 394 IAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDI 453

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A     +M    +     +   +I   CK G+      L ++   QGF      +  +
Sbjct: 454 ENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTI 513

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           IDG  K GNI  A      M ++G   +   Y  ++D   K   ID A+ +   M+ K  
Sbjct: 514 IDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGL 573

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D   Y +++   CK + + SA +LL     +G+   +    +++ G ++     EA  
Sbjct: 574 KMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAID 633

Query: 308 IQSKI 312
           +  K+
Sbjct: 634 LYKKM 638



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 5/197 (2%)

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
           C   N  Y L L  L  M+  G+      + +VI A VK G + EA    + MV  G  +
Sbjct: 204 CLKPNSGYALSL--LREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSM 261

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++    +L+  YC +G L +A +L++E+ + G   +K T+++LIDG CK GNI+ A    
Sbjct: 262 NLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFY 321

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ESME--VKDSFTYSSMVHNLCKAK 265
             M   G  S++ + N I++   K     +A  +F +++E  + + FT+++++  LCK  
Sbjct: 322 SEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEG 381

Query: 266 RLPSASKLLLSCLKSGV 282
           ++  A  L    +  G+
Sbjct: 382 KMNEACNLWDEVIAKGI 398



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 137/327 (41%), Gaps = 40/327 (12%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++I ++ LC    +  AL + R ++  G++P   T+  +I    K G +  A  +  ++ 
Sbjct: 196 YSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMV 255

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G + N    T++MK        +  L +++ +   G   +   Y  +I    K G ++
Sbjct: 256 NCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIE 315

Query: 133 EATDYMEQMVTDGVQ----------------------------------LDIVSYNTLIN 158
           +A ++  +M T G++                                   ++ ++NTL++
Sbjct: 316 KAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLS 375

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFD 217
             CKEGK+  A  L DE+  +G   +  ++  +I G C+  NI  A +++ E ++  GF 
Sbjct: 376 WLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDN-GFT 434

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            N   +  ++D   K G I++A ++F  M+    +    T   ++  LCKA R      L
Sbjct: 435 PNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDL 494

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSG 300
               +  G          ++DG    G
Sbjct: 495 FNKFVSQGFVPTCMPYNTIIDGFIKEG 521



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P      +++NGLC     +NA ++   +     +P ++ YN LI G  K G 
Sbjct: 673 MLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGN 732

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
           L+ A  +  E+ D G  P+ ITY  ++   F+
Sbjct: 733 LQEAFRLHDEMLDRGLVPDNITYDILVNGKFK 764



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 42/206 (20%)

Query: 119 CTVIAAF---VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-------------- 161
           CT +  F   ++ G + EA  +  Q    GV+LD  +Y+  ++L C              
Sbjct: 159 CTKLYNFPLDIQEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLRE 218

Query: 162 ---------------------KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
                                KEG +  A  L D+M   G   +    T L+ G C  GN
Sbjct: 219 MRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGN 278

Query: 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSS 256
           ++ A + +  +++ G   N   Y+ ++D   K+G I+ A   +  M+ K      ++ +S
Sbjct: 279 LRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNS 338

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGV 282
           ++    K +   +A  +    L+SG+
Sbjct: 339 ILEGYLKCQSWQNAFTMFNDALESGL 364


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 156/315 (49%), Gaps = 14/315 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTAR 65
           P   +  I+L GLC    +  AL +   +   G   +P +V+Y+ +I GL K G    A 
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAY 218

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +E+ D    PN + Y++I+    + +     +E+   M + G T + F Y +++  F
Sbjct: 219 ATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGF 278

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+L EA  ++E+M ++GV+ ++V+Y++ ++  CK G+   A  + D M K+G + D 
Sbjct: 279 CSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDI 338

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA----YNCIVDRLGKDGKIDHAIN 241
            T++ L+ G      I+GA + +  +  +   S+++     +N ++    K GK+D A+ 
Sbjct: 339 TTYSSLLHGYA----IEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAML 394

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           VF  M  +    +  TYS++++  CK  R+ +A  L    + +GV         ++ GL 
Sbjct: 395 VFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLF 454

Query: 298 HSGCRREAKKIQSKI 312
            +G    AK+   +I
Sbjct: 455 RTGRTATAKEFYVQI 469



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 115/234 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    ++ ++  LCK +  D A+ +   + K+G  P   TY  L+ G C +G+L  A 
Sbjct: 229 ILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAI 288

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+++  +G  PN +TY++ M    +N +     +I  +M ++G   D   Y +++  +
Sbjct: 289 KFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGY 348

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E     + MV   +Q D   +NTLI    K+GK++ A L+  +M +QG + + 
Sbjct: 349 AIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNC 408

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            T++ LI+G CK   ++ A    + M   G   N   YN ++  L + G+   A
Sbjct: 409 VTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATA 462



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 130/282 (46%), Gaps = 4/282 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   +++ +++GL K    D A   +R +     +P +V Y+ +I  LCK   +  
Sbjct: 192 GGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDK 251

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +   +  +G  PN  TYT+++     + +    ++ L  M   G   +   Y + + 
Sbjct: 252 AMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMD 311

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + MV  G++ DI +Y++L++ Y  EG L   + L D M +   + 
Sbjct: 312 YLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQP 371

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D Y    LI    K G +  A L    M + G   N   Y+ +++   K  ++++A+ +F
Sbjct: 372 DHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALF 431

Query: 244 ESM---EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           + M    V  +F TY+ M+  L +  R  +A +  +  +KSG
Sbjct: 432 QEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSG 473



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 125/262 (47%), Gaps = 9/262 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA- 64
           +TP   T+ I++   C     D        + K GF  E + +N L+KGLC   R   A 
Sbjct: 86  VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAM 145

Query: 65  RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTV 121
             +L+ + +    PN  ++T I+K  C  NR  +  LE+L  M   G     +   Y TV
Sbjct: 146 DIVLRGMTELSCVPNVFSHTIILKGLCHENRSQE-ALELLHMMADDGGGCLPNVVSYSTV 204

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I   +K G   +A     +M+   +  ++V Y+++I   CK   ++ A  + D M K G 
Sbjct: 205 IDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGV 264

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             + +T+T L+ G C +G +  A   LE M   G + N+  Y+  +D L K+G+   A  
Sbjct: 265 TPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARK 324

Query: 242 VFESMEVK----DSFTYSSMVH 259
           +F+SM  +    D  TYSS++H
Sbjct: 325 IFDSMVKRGLKPDITTYSSLLH 346



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 10/210 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+  +++G C +     A++    +  +G  P +VTY+  +  LCK GR
Sbjct: 259 MVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGR 318

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM-----KCCFRNRKYKLGLEILSAMKRKGYTFDG 115
              AR I   +   G  P+  TY++++     +           L + S M+   Y F+ 
Sbjct: 319 CTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFN- 377

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
               T+I A  K G++ EA     +M   G++ + V+Y+TLIN YCK  ++E A  L  E
Sbjct: 378 ----TLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQE 433

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           M   G   +  T+ I++ GL + G    A+
Sbjct: 434 MVSNGVSPNFITYNIMLQGLFRTGRTATAK 463



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 84/180 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T++  ++ LCKN     A ++F  + K G  P++ TY+ L+ G    G 
Sbjct: 294 MCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGA 353

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     +   +  S   P+   + T++    +  K    + + S M+++G   +   Y T
Sbjct: 354 LVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYST 413

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + KI R++ A    ++MV++GV  + ++YN ++    + G+   A     ++ K G
Sbjct: 414 LINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSG 473



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 15/294 (5%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI-----LKELGDSGHAPNAI 81
           ++AL +F  L + G    + + N     L    R   A  +     +   G S   P   
Sbjct: 35  EDALDVFDELLRRGIGAPIRSLN---GALADVARDNPAAAVSRFNRMARAGASMVTPTVH 91

Query: 82  TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
           TY  ++ CC    +  LG   L  + +KG+  +   +  ++       R  +A D + + 
Sbjct: 92  TYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRG 151

Query: 142 VTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKA 198
           +T+     ++ S+  ++   C E + + A  LL  M   G  C  +  +++ +IDGL K 
Sbjct: 152 MTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKG 211

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTY 254
           G+   A      M       N+  Y+ I+  L K   +D A+ V + M       + FTY
Sbjct: 212 GDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTY 271

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +S+VH  C + +L  A K L     +GV        + +D L  +G   EA+KI
Sbjct: 272 TSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKI 325


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 8/307 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C   +P  A  + ++ GL K    + AL + + +   G  P L  YN LI  LCK  +
Sbjct: 323 MLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRK 382

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +   +G  G  PN +TY+ ++    R  K    L  L  M   G     + Y +
Sbjct: 383 FHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNS 442

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G +  A  +M +M+   ++  +V+Y +L+  YC +GK+  A  L  EM  +G
Sbjct: 443 LINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                YT T L+ GL +AG I+ A      M +     N   YN +++   ++G +  A 
Sbjct: 503 IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAF 562

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + M     V D+++Y  ++H LC   +  S +K+ +  L  G   L    +    GL
Sbjct: 563 EFLKEMTEKGIVPDTYSYRPLIHGLCLTGQ-ASEAKVFVDGLHKGNCEL---NEICYTGL 618

Query: 297 RHSGCRR 303
            H  CR 
Sbjct: 619 LHGFCRE 625



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 129/277 (46%), Gaps = 4/277 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   L P   T+  ++ G C     + ALR++  +   G  P + T+  L+ GL +AG 
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGL 522

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A  +  E+ +    PN +TY  +++            E L  M  KG   D + Y  
Sbjct: 523 IRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRP 582

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I      G+  EA  +++ +     +L+ + Y  L++ +C+EGKLE A  +  EM ++G
Sbjct: 583 LIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRG 642

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D   + +LIDG  K  + K     L+ M+  G   +   Y  ++D   K G    A 
Sbjct: 643 VDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAF 702

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            +++ M     V +  TY+++++ LCKA  +  A  L
Sbjct: 703 GIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVL 739



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 6/307 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL P   T+  ++ GLCK +  +  L M   +    F P     + L++GL K G++  A
Sbjct: 292 DLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEA 351

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             ++K + D G +PN   Y  ++    + RK+     +   M + G   +   Y  +I  
Sbjct: 352 LNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDM 411

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F + G+L  A  ++ +MV  G++L +  YN+LIN +CK G + AA   + EM  +  E  
Sbjct: 412 FCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPT 471

Query: 185 KYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
             T+T L+ G C  G I K  RL+ E   K G   ++  +  ++  L + G I  A+ +F
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTGK-GIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530

Query: 244 ESM---EVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
             M    VK +  TY+ M+   C+   +  A + L    + G+     + + ++ GL  +
Sbjct: 531 NEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLT 590

Query: 300 GCRREAK 306
           G   EAK
Sbjct: 591 GQASEAK 597



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 145/312 (46%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +  ++  LC+ +    A  M   ++  G    +V YN+LI GLCK  +
Sbjct: 218 MVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQK 277

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K+L      P+ +TY T++    + +++++GLE++  M    ++       +
Sbjct: 278 VWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSS 337

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K G+++EA + ++++V  GV  ++  YN LI+  CK  K   A LL D M K G
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG 397

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T++ILID  C+ G +  A   L  M   G   ++  YN +++   K G I  A 
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                M  K       TY+S++   C   ++  A +L       G+         ++ GL
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517

Query: 297 RHSGCRREAKKI 308
             +G  R+A K+
Sbjct: 518 FRAGLIRDAVKL 529



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 117/241 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++I+++  C+    D AL     +   G    +  YN LI G CK G +  A 
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             + E+ +    P  +TYT++M       K    L +   M  KG     + + T+++  
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G +++A     +M    V+ + V+YN +I  YC+EG +  A+  L EM ++G   D 
Sbjct: 518 FRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDT 577

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           Y++  LI GLC  G    A++ ++ ++K   + N   Y  ++    ++GK++ A++V + 
Sbjct: 578 YSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQE 637

Query: 246 M 246
           M
Sbjct: 638 M 638



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 134/283 (47%), Gaps = 6/283 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+N+M+ G C+      A    + + + G VP+  +Y  LI GLC  G+   A
Sbjct: 537 NVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA 596

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           +  +  L       N I YT ++    R  K +  L +   M ++G   D   Y  +I  
Sbjct: 597 KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDG 656

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            +K    K     +++M   G++ D V Y ++I+   K G  + A+ + D M  +G   +
Sbjct: 657 SLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPN 716

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID--HAINV 242
           + T+T +I+GLCKAG +  A +    M  +    N   Y C +D L K G++D   A+ +
Sbjct: 717 EVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTK-GEVDMQKAVEL 775

Query: 243 FESM---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             ++    + ++ TY+ ++   C+  R+  AS+L+   +  GV
Sbjct: 776 HNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGV 818



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 125/273 (45%), Gaps = 4/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T + +L+GL K R+   A+ +F  +   G  P++  Y  +I+ LC+   L  A+
Sbjct: 188 LLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAK 247

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  +  +G   N + Y  ++    + +K    + I   +  K    D   YCT++   
Sbjct: 248 EMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGL 307

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+   +   + M++M+         + ++L+    K GK+E A  L+  +   G   + 
Sbjct: 308 CKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNL 367

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           + +  LID LCK      A L  + M KIG   N   Y+ ++D   + GK+D A++    
Sbjct: 368 FVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGE 427

Query: 246 M---EVKDS-FTYSSMVHNLCKAKRLPSASKLL 274
           M    +K S + Y+S+++  CK   + +A   +
Sbjct: 428 MVDTGLKLSVYPYNSLINGHCKFGDISAAEGFM 460



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  M++   K      A  ++  +   G VP  VTY  +I GLCKAG +  A 
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-----KGYTFDGFGYCT 120
            +  ++      PN +TY      CF +   K  +++  A++      KG   +   Y  
Sbjct: 738 VLCSKMQPVSSVPNQVTYG-----CFLDILTKGEVDMQKAVELHNAILKGLLANTATYNM 792

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F + GR++EA++ + +M+ DGV  D ++Y T+IN  C+   ++ A  L + M ++G
Sbjct: 793 LIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKG 852

Query: 181 FECDKYTHTILIDGLCKAGNIKGA 204
              D+  +  LI G C AG +  A
Sbjct: 853 IRPDRVAYNTLIHGCCVAGEMGKA 876



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 130/316 (41%), Gaps = 39/316 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T ++  +++GLC       A     GL K       + Y  L+ G C+ G+L  A 
Sbjct: 573 IVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEAL 632

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+   G   + + Y  ++    +++  KL   +L  M  +G   D   Y ++I A 
Sbjct: 633 SVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAK 692

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK------- 178
            K G  KEA    + M+ +G   + V+Y  +IN  CK G +  A +L  +M+        
Sbjct: 693 SKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQ 752

Query: 179 ----------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                                       +G   +  T+ +LI G C+ G I+ A   +  
Sbjct: 753 VTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITR 812

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
           M   G   +   Y  +++ L +   +  AI ++ SM  K    D   Y++++H  C A  
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGE 872

Query: 267 LPSASKLLLSCLKSGV 282
           +  A++L    L+ G+
Sbjct: 873 MGKATELRNEMLRQGL 888



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 132/288 (45%), Gaps = 5/288 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           F++++    ++R   + + +F+ +  K   +PE+ T + L+ GL K      A  +  ++
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+   YT +++     +      E+++ M+  G   +   Y  +I    K  ++
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA    + +    ++ D+V+Y TL+   CK  + E    ++DEM    F   +   + L
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSL 338

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           ++GL K G I+ A   ++ +   G   NL  YN ++D L K  K   A  +F+ M     
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGL 398

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +  TYS ++   C+  +L +A   L   + +G+++      ++++G
Sbjct: 399 RPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 14/188 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY----NILIKG-- 54
           MI     P   T+  ++NGLCK  + + A  +   +Q    VP  VTY    +IL KG  
Sbjct: 708 MINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEV 767

Query: 55  -LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
            + KA  L  A  ILK     G   N  TY  +++   R  + +   E+++ M   G + 
Sbjct: 768 DMQKAVELHNA--ILK-----GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSP 820

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D   Y T+I    +   +K+A +    M   G++ D V+YNTLI+  C  G++  A  L 
Sbjct: 821 DCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELR 880

Query: 174 DEMEKQGF 181
           +EM +QG 
Sbjct: 881 NEMLRQGL 888



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T+  M+N LC+      A+ ++  + + G  P+ V YN LI G C AG 
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGE 872

Query: 61  LRTARWILKELGDSGHAPNAITYTT 85
           +  A  +  E+   G  PN  T  T
Sbjct: 873 MGKATELRNEMLRQGLIPNNKTSRT 897


>gi|388490582|gb|AFK33357.1| unknown [Medicago truncatula]
          Length = 389

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 145/313 (46%), Gaps = 38/313 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N++L GLCK   T++A+++F+ L + GF P +V++NIL++ LC  GR   A  +
Sbjct: 57  PNLVSYNVLLTGLCKEGRTEDAIKLFKELPEKGFKPCVVSHNILLRSLCYEGRWDEAYEL 116

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G AP+ +TY  ++     + + +   ++L  M + G+      Y  +IA   K
Sbjct: 117 MAGMDRDGQAPSVVTYNVLITSLSIDGRIEQAFKVLDEMTKSGFKVSANSYNPIIARLCK 176

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTL------------------------------- 156
            GR+      ++QM+     L+  +YN +                               
Sbjct: 177 EGRVDLVVQCLDQMINRRFHLNGGTYNAIALLCERGMVKEAFLILERLGKKQNYPISDFY 236

Query: 157 ---INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
              I L C++G    A+ +L EM   GF  D YT++ LI G+C+ G +  A      + +
Sbjct: 237 KNVITLLCRKGSTYPAFQILYEMTVHGFTPDSYTYSSLIRGMCREGMLDEALQIFGILEE 296

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G+  +++ YN ++  L K  +ID +I +F+ M  K    +  TY+  V  L   + +  
Sbjct: 297 HGYVPHVDNYNALILGLCKSQRIDMSIEIFQMMVNKGCMPNEMTYNIFVEALAFEEEMEL 356

Query: 270 ASKLLLSCLKSGV 282
           A+ LL      GV
Sbjct: 357 AATLLNELYLKGV 369



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 5/273 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T++I++    K R  D A+++   +   G  P LV+YN+L+ GLCK GR   A 
Sbjct: 20  LVPNVVTYSILIEAAYKERGVDEAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEDAI 79

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KEL + G  P  +++  +++      ++    E+++ M R G       Y  +I + 
Sbjct: 80  KLFKELPEKGFKPCVVSHNILLRSLCYEGRWDEAYELMAGMDRDGQAPSVVTYNVLITSL 139

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR+++A   +++M   G ++   SYN +I   CKEG+++     LD+M  + F  + 
Sbjct: 140 SIDGRIEQAFKVLDEMTKSGFKVSANSYNPIIARLCKEGRVDLVVQCLDQMINRRFHLNG 199

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+   I  LC+ G +K A L LE + K       + Y  ++  L + G    A  +   
Sbjct: 200 GTYNA-IALLCERGMVKEAFLILERLGKKQNYPISDFYKNVITLLCRKGSTYPAFQILYE 258

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLL 274
           M V     DS+TYSS++  +C+   L  A ++ 
Sbjct: 259 MTVHGFTPDSYTYSSLIRGMCREGMLDEALQIF 291



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 95/188 (50%)

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           G+L  +  IL  L   G  PN +TY+ +++  ++ R     +++L  +  KG   +   Y
Sbjct: 3   GKLNQSMQILDRLIKKGLVPNVVTYSILIEAAYKERGVDEAMKLLDDIIAKGGKPNLVSY 62

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             ++    K GR ++A    +++   G +  +VS+N L+   C EG+ + AY L+  M++
Sbjct: 63  NVLLTGLCKEGRTEDAIKLFKELPEKGFKPCVVSHNILLRSLCYEGRWDEAYELMAGMDR 122

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
            G      T+ +LI  L   G I+ A   L+ M K GF  +  +YN I+ RL K+G++D 
Sbjct: 123 DGQAPSVVTYNVLITSLSIDGRIEQAFKVLDEMTKSGFKVSANSYNPIIARLCKEGRVDL 182

Query: 239 AINVFESM 246
            +   + M
Sbjct: 183 VVQCLDQM 190



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 61/110 (55%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M     TP + T++ ++ G+C+    D AL++F  L++HG+VP +  YN LI GLCK+ R
Sbjct: 259 MTVHGFTPDSYTYSSLIRGMCREGMLDEALQIFGILEEHGYVPHVDNYNALILGLCKSQR 318

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           +  +  I + + + G  PN +TY   ++      + +L   +L+ +  KG
Sbjct: 319 IDMSIEIFQMMVNKGCMPNEMTYNIFVEALAFEEEMELAATLLNELYLKG 368



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 90/176 (51%), Gaps = 4/176 (2%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G+L ++   +++++  G+  ++V+Y+ LI    KE  ++ A  LLD++  +G + +  ++
Sbjct: 3   GKLNQSMQILDRLIKKGLVPNVVTYSILIEAAYKERGVDEAMKLLDDIIAKGGKPNLVSY 62

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-- 246
            +L+ GLCK G  + A    + + + GF   + ++N ++  L  +G+ D A  +   M  
Sbjct: 63  NVLLTGLCKEGRTEDAIKLFKELPEKGFKPCVVSHNILLRSLCYEGRWDEAYELMAGMDR 122

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             +     TY+ ++ +L    R+  A K+L    KSG ++  ++   ++  L   G
Sbjct: 123 DGQAPSVVTYNVLITSLSIDGRIEQAFKVLDEMTKSGFKVSANSYNPIIARLCKEG 178


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 144/312 (46%), Gaps = 39/312 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P    FNI  +   K    D A+ +F  +++HG  P+ V+Y  LI  LCK GR
Sbjct: 21  MVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGR 80

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     ++ + G  PN + +++++                            +G C+
Sbjct: 81  VDDAEVKFNQMINEGVTPNIVVFSSLV----------------------------YGLCS 112

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                  I + ++  +   +M+  G+  +IV +NT++   CKEG++     L+D +E  G
Sbjct: 113 -------IDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG 165

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  ++  LIDG C AG I  A   LE M  +G   N  +YN ++    K G+ID A 
Sbjct: 166 VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAY 225

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++F  M          TY++++H L + KR   A +L L+ + SG +        +++GL
Sbjct: 226 SLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGL 285

Query: 297 RHSGCRREAKKI 308
             S C  EA K+
Sbjct: 286 CKSNCVDEAFKM 297



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 145/313 (46%), Gaps = 6/313 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   ++  +++ LCK    D+A   F  +   G  P +V ++ L+ GLC   +     
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ + G  PN + + TI+    +  +   G  ++ +++  G   D   Y T+I   
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 180

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G + EA+  +E MV+ G++ +  SYNTL++ YCK G++++AY L  +M   G     
Sbjct: 181 CLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGV 240

Query: 186 YTHTILIDGLCKAGNIKGAR-LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            T+  ++ GL +      A+ L+L  +N  G    +  YN I++ L K   +D A  +F+
Sbjct: 241 VTYNTILHGLFQTKRFSEAKELYLNMINS-GTKWGIYTYNTILNGLCKSNCVDEAFKMFQ 299

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           S+  K    +  T++ M+  L K  R   A  L  +   +G+       + V + L   G
Sbjct: 300 SLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEG 359

Query: 301 CRREAKKIQSKIR 313
              E   + S + 
Sbjct: 360 SLEEFDSLFSAME 372



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 112/237 (47%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           C  + P   ++N +++G C     D A ++  G+   G  P   +YN L+ G CKAGR+ 
Sbjct: 163 CMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRID 222

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
           +A  + +++  +G  P  +TY TI+   F+ +++    E+   M   G  +  + Y T++
Sbjct: 223 SAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTIL 282

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K   + EA    + + + G+QL+I+++  +I    K G+ E A  L   +   G  
Sbjct: 283 NGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLV 342

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            D  T+ ++ + L + G+++        M K G   N +  N +V RL   G I  A
Sbjct: 343 PDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 399



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 108/239 (45%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P + ++N +L+G CK    D+A  +FR +  +G  P +VTYN ++ GL +  R
Sbjct: 196 MVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKR 255

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +   + +SG      TY TI+    ++       ++  ++  KG   +   +  
Sbjct: 256 FSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTI 315

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I A +K GR ++A D    +  +G+  D+V+Y  +     +EG LE    L   MEK G
Sbjct: 316 MIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNG 375

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +      L+  L   G+I  A  +L  +++  F       + ++     D    HA
Sbjct: 376 TAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHA 434


>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
          Length = 418

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 132/266 (49%), Gaps = 5/266 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+NI++N  C +    +A  +F  + +    P +VT+  LI GLC+  RL  A  
Sbjct: 145 TPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASR 204

Query: 67  ILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           + +++    +  PNA  Y ++MK   R  +  L  E+   M       D   Y T+IAA 
Sbjct: 205 LKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAAL 264

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+GR  E    +E+M  +G + D V+YN +I+ +C E   EAAY +L+EM  +G + D 
Sbjct: 265 FKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDV 324

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++ ++I GLCK G  + A    E M + G   ++ +Y  + D L +  + + A  + + 
Sbjct: 325 ISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDE 384

Query: 246 MEVK----DSFTYSSMVHNLCKAKRL 267
           M  K     S + +  V  LC  + L
Sbjct: 385 MVFKGYAPKSASXTKFVEALCSGREL 410



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 40/264 (15%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D    PN  TY  ++  C  + +      +   M RK    +   + T+I+   +  RL 
Sbjct: 141 DKFATPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLD 200

Query: 133 EATDYME------------------------------------QMVTDGVQLDIVSYNTL 156
           EA+   E                                    +MV + ++LD   Y+TL
Sbjct: 201 EASRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTL 260

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           I    K G+ +  +++L+EM + G + D  T+  +I G C   + + A   LE M   G 
Sbjct: 261 IAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGC 320

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
             ++ +YN I+  L K+GK   A ++FE M       D  +Y  +   LC+  +   A+ 
Sbjct: 321 KPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAF 380

Query: 273 LLLSCLKSGVRILKSAQKAVVDGL 296
           +L   +  G     ++    V+ L
Sbjct: 381 ILDEMVFKGYAPKSASXTKFVEAL 404



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 30/165 (18%)

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           ++ +YN LIN  C  G+L  A+ + DEM ++    +  T   LI GLC+           
Sbjct: 147 NVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCR----------- 195

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLP 268
                   DS L+       RL +D      + VF      ++F Y+S++  LC+   L 
Sbjct: 196 --------DSRLDE----ASRLKED-----MVKVFNVK--PNAFVYASLMKGLCRVNELS 236

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            A +L    + + +R+       ++  L   G + E   +  ++R
Sbjct: 237 LAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMR 281


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 8/314 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T T+N +++  C+      A  +   ++  G    +VT N ++ GLC+AGR   A  
Sbjct: 243 PPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALE 302

Query: 67  ILKE---LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             +E   +   G   NA+TY+T++          + +E+      +G++ D   Y T+I+
Sbjct: 303 FFREKRTVWPEGKG-NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMIS 361

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + GRL++A      M   G +LD  +YN LI  +C++ +L  AY LL EM++ G   
Sbjct: 362 GLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRP 421

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  L+ G CKAG+       L  M   G   ++  +  +V    K GKID A+ + 
Sbjct: 422 DVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRIL 481

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            SM+      ++  Y++++  LCK   +  A +L     +  V    +   A++ GLR  
Sbjct: 482 RSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDK 541

Query: 300 GCRREAKKIQSKIR 313
               +A ++  ++R
Sbjct: 542 NMPEKAFELMDQMR 555



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 151/347 (43%), Gaps = 51/347 (14%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGR 60
           C  + P   T+ I++NGLCK     +ALR+  G+ +      P++VT N ++ GLCK+GR
Sbjct: 165 CASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGR 224

Query: 61  LRTARWILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMK----------- 107
           ++ A   +++   S H   PN +TY  ++    R     +  E++  M+           
Sbjct: 225 VQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTL 284

Query: 108 -----------RKGYTFDGF---------------GYCTVIAAFVKIGRLKEATDYMEQM 141
                      R G   + F                Y T++ A +    +  A +   + 
Sbjct: 285 NTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEK 344

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
           +++G   D + Y T+I+   + G+LE A  +   M++ GF+ D   + ILI G C+   +
Sbjct: 345 MSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRL 404

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS-----FTYSS 256
             A   L+ M ++G   ++  YN ++    K G    A++      + D       T+ +
Sbjct: 405 HEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF-AAVDELLGKMIDDGCQPSVITFGT 463

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +VH  CK  ++  A ++L S  +SG+         ++D L    C+R
Sbjct: 464 LVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFL----CKR 506



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 41/281 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWI 67
           T N ++ GLC+   T  AL  FR  +K    PE     VTY+ L+  L     +  A  +
Sbjct: 283 TLNTIVGGLCRAGRTGAALEFFR--EKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMEL 340

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E    GH+P+AI Y T++    +  + +    + S+MK  G+  D   Y  +IA F +
Sbjct: 341 FHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCR 400

Query: 128 IGRLKEATDYMEQM-----------------------------------VTDGVQLDIVS 152
             RL EA + +++M                                   + DG Q  +++
Sbjct: 401 KKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVIT 460

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           + TL++ YCK GK++ A  +L  M++ G   +   +  LID LCK G++  A    + M 
Sbjct: 461 FGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMK 520

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT 253
           +    +N+  +N ++  L      + A  + + M  +  F 
Sbjct: 521 EKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFP 561



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 135/304 (44%), Gaps = 52/304 (17%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARWILKEL 71
           FN +L  L + R      R++  +Q    V P++VTY IL+ GLCKAGR+          
Sbjct: 139 FNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRV---------- 188

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCTVIAAFVKIG 129
           GD+                         L +L  M R+      D     TV+    K G
Sbjct: 189 GDA-------------------------LRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSG 223

Query: 130 RLKEATDYMEQMVTD--GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           R++EA  ++EQ ++   G   + V+YN LI+ +C+ G +  AY L+++ME +G   +  T
Sbjct: 224 RVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVT 283

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVF- 243
              ++ GLC+AG   GA L      +  +     N   Y+ +V  L     +  A+ +F 
Sbjct: 284 LNTIVGGLCRAGR-TGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFH 342

Query: 244 ESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           E M      D+  Y +M+  L +A RL  A  +  S  ++G ++   A   ++ G     
Sbjct: 343 EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGF---- 398

Query: 301 CRRE 304
           CR++
Sbjct: 399 CRKK 402



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TF  +++G CK    D ALR+ R + + G  P  V YN LI  LCK G 
Sbjct: 449 MIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGD 508

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ +     N  T+  ++K        +   E++  M R+   F  +    
Sbjct: 509 VDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQM-REERCFPDYVTVD 567

Query: 121 VIAAFVK-IGRLKEATDYMEQ 140
           V+  ++  IG       +M+Q
Sbjct: 568 VLMEWLPVIGETDRLKRFMQQ 588


>gi|297849764|ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338605|gb|EFH69022.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 804

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 144/279 (51%), Gaps = 10/279 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG L P   + NI++NGLC       AL +   + KHG  P+ VTYNIL+KG    G + 
Sbjct: 270 CG-LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILVKGFHLLGMIS 328

Query: 63  TARWILKELGDSGHAPNAITYTTIM--KCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYC 119
            A  +++++ D G +P+ ITYT ++  +C   N    +GL +L  M  +G+       Y 
Sbjct: 329 GAGEVIQDMLDKGLSPDVITYTILLCGQCQLGN--IDMGLILLKDMLSRGFELKSIIPYS 386

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +++   K GR+ EA      +   G+  D+V+Y+ +I+  CK GK + A  + DEM  +
Sbjct: 387 VMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYSIVIHGLCKLGKFDMAVRVYDEMCYK 446

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
               +  T   ++ GLC+ G +  AR  L+ +   G   ++  YN ++D   K G I+ A
Sbjct: 447 RILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISSGDTLDIILYNIVIDGYAKSGCIEEA 506

Query: 240 INVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           + +F    ES    +  T++S+++  CK + +  A K+L
Sbjct: 507 LELFKVAIESGITPNVATFNSLIYGYCKTQNIAEARKIL 545



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 141/309 (45%), Gaps = 40/309 (12%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+ P   +FN +++  CK  + D A   F  + K G VP + ++NILI GLC  G +  A
Sbjct: 236 DIGPSVVSFNSIMSSYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEA 295

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  ++   G  P+++TY  ++K                                    
Sbjct: 296 LELASDMNKHGVEPDSVTYNILVK-----------------------------------G 320

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F  +G +  A + ++ M+  G+  D+++Y  L+   C+ G ++   +LL +M  +GFE  
Sbjct: 321 FHLLGMISGAGEVIQDMLDKGLSPDVITYTILLCGQCQLGNIDMGLILLKDMLSRGFELK 380

Query: 185 K-YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
               +++++ GLCK G +  A      +   G   +L AY+ ++  L K GK D A+ V+
Sbjct: 381 SIIPYSVMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYSIVIHGLCKLGKFDMAVRVY 440

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M  K    +S T  +++  LC+   L  A  LL S + SG  +       V+DG   S
Sbjct: 441 DEMCYKRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISSGDTLDIILYNIVIDGYAKS 500

Query: 300 GCRREAKKI 308
           GC  EA ++
Sbjct: 501 GCIEEALEL 509



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 147/370 (39%), Gaps = 52/370 (14%)

Query: 1   MICGDLTPCTATFNIML------------------------------------NGLCKNR 24
           M+   L+P   T+ I+L                                    +GLCK  
Sbjct: 337 MLDKGLSPDVITYTILLCGQCQLGNIDMGLILLKDMLSRGFELKSIIPYSVMLSGLCKTG 396

Query: 25  YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84
             D AL +F  L+ +G  P+LV Y+I+I GLCK G+   A  +  E+      PN+ T  
Sbjct: 397 RVDEALSLFYDLEAYGLTPDLVAYSIVIHGLCKLGKFDMAVRVYDEMCYKRILPNSRTLG 456

Query: 85  TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
            IM    +         +L ++   G T D   Y  VI  + K G ++EA +  +  +  
Sbjct: 457 AIMLGLCQKGMLLEARSLLDSLISSGDTLDIILYNIVIDGYAKSGCIEEALELFKVAIES 516

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G+  ++ ++N+LI  YCK   +  A  +LD ++  G      ++T L+D     G+IK  
Sbjct: 517 GITPNVATFNSLIYGYCKTQNIAEARKILDVIKLYGLVPSVVSYTTLMDAYANCGSIKSI 576

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID---------------HAINVFESMEV- 248
                 M   G       Y+ I   L +  K++               H +   ES  + 
Sbjct: 577 EELRREMKAEGIPPTNVTYSVIFKGLCRGWKLENCNQVLRERILEKFNHVLRDMESEGIT 636

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY++++  LC+ K L  A +L        +    +    ++D L   GC R+A + 
Sbjct: 637 PDQITYNTIIQYLCRVKHLSRAFELFKKMKSQNLDPTSATYNILIDSLCIYGCIRKADRF 696

Query: 309 QSKIRMAKIS 318
              ++   +S
Sbjct: 697 LYSLQKRNVS 706



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 22/270 (8%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+++G  K+   + AL +F+   + G  P + T+N LI G CK   +  AR IL  + 
Sbjct: 490 YNIVIDGYAKSGCIEEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEARKILDVIK 549

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P+ ++YTT+M         K   E+   MK +G       Y  +     +  +L+
Sbjct: 550 LYGLVPSVVSYTTLMDAYANCGSIKSIEELRREMKAEGIPPTNVTYSVIFKGLCRGWKLE 609

Query: 133 EATDYMEQ------------MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                + +            M ++G+  D ++YNT+I   C+   L  A+ L  +M+ Q 
Sbjct: 610 NCNQVLRERILEKFNHVLRDMESEGITPDQITYNTIIQYLCRVKHLSRAFELFKKMKSQN 669

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T+ ILID LC  G I+ A   L  + K     +  AY  ++      G  + A+
Sbjct: 670 LDPTSATYNILIDSLCIYGCIRKADRFLYSLQKRNVSLSKFAYTTVIKAHCVKGDPEMAV 729

Query: 241 NVFESM-------EVKDSFTYSSMVHNLCK 263
            +F  +        ++D   YS++++ LC+
Sbjct: 730 ILFNQLLDRGFNVSIRD---YSAVINRLCR 756



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 110/237 (46%), Gaps = 12/237 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP  ATFN ++ G CK +    A ++   ++ +G VP +V+Y  L+      G +++  
Sbjct: 518 ITPNVATFNSLIYGYCKTQNIAEARKILDVIKLYGLVPSVVSYTTLMDAYANCGSIKSIE 577

Query: 66  WILKELGDSGHAPNAITYTTIMK----------C--CFRNRKYKLGLEILSAMKRKGYTF 113
            + +E+   G  P  +TY+ I K          C    R R  +    +L  M+ +G T 
Sbjct: 578 ELRREMKAEGIPPTNVTYSVIFKGLCRGWKLENCNQVLRERILEKFNHVLRDMESEGITP 637

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D   Y T+I    ++  L  A +  ++M +  +     +YN LI+  C  G +  A   L
Sbjct: 638 DQITYNTIIQYLCRVKHLSRAFELFKKMKSQNLDPTSATYNILIDSLCIYGCIRKADRFL 697

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
             ++K+     K+ +T +I   C  G+ + A +    +   GF+ ++  Y+ +++RL
Sbjct: 698 YSLQKRNVSLSKFAYTTVIKAHCVKGDPEMAVILFNQLLDRGFNVSIRDYSAVINRL 754



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 25/282 (8%)

Query: 33  FRGLQKHGFVPELVTYNILIKGLCKAGRLRT---ARWILKELGDSGHAPNAITYTTIMKC 89
           FR  +  G V +++ +         + RLR    + +ILK++ D     +  +Y +++  
Sbjct: 136 FRKWESTGLVWDMLLF--------LSSRLRMVDESLYILKKMKDRNLNVSTQSYNSVL-- 185

Query: 90  CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149
            +  R+     ++   +K K    +   Y TV+    +  +L++A  ++       +   
Sbjct: 186 -YNFRETDKMWDVYKEIKDK----NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPS 240

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209
           +VS+N++++ YCK G ++ A      + K G     Y+H ILI+GLC  G+I  A     
Sbjct: 241 VVSFNSIMSSYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELAS 300

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 265
            MNK G + +   YN +V      G I  A  V + M  K    D  TY+ ++   C+  
Sbjct: 301 DMNKHGVEPDSVTYNILVKGFHLLGMISGAGEVIQDMLDKGLSPDVITYTILLCGQCQLG 360

Query: 266 RLPSASKLLLSCLKSGVRILKS--AQKAVVDGLRHSGCRREA 305
            +     LL   L  G   LKS      ++ GL  +G   EA
Sbjct: 361 NIDMGLILLKDMLSRGFE-LKSIIPYSVMLSGLCKTGRVDEA 401



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 65/145 (44%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP   T+N ++  LC+ ++   A  +F+ ++     P   TYNILI  LC  G +R A 
Sbjct: 635 ITPDQITYNTIIQYLCRVKHLSRAFELFKKMKSQNLDPTSATYNILIDSLCIYGCIRKAD 694

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L  L     + +   YTT++K        ++ + + + +  +G+      Y  VI   
Sbjct: 695 RFLYSLQKRNVSLSKFAYTTVIKAHCVKGDPEMAVILFNQLLDRGFNVSIRDYSAVINRL 754

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDI 150
            +     E+  +   M++ G+  D+
Sbjct: 755 CRRHLAIESKYFFCLMLSRGISPDL 779


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 5/280 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T   +++GLCK  +T+ A R+F  L +  G+ P + TY  +I G CK  +L  A  
Sbjct: 327 PNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEM 386

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  + + G  PN  TYTT++    +   +    E++  M ++G++ + + Y  +I    
Sbjct: 387 LLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLC 446

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G L EA   + ++   G+Q D V+Y  L++++C++     + +  ++M K GF  D +
Sbjct: 447 KKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIH 506

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++T LI   C+   +K +    E    +G     + Y  ++    + G    A+ +F+ M
Sbjct: 507 SYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRM 566

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                  DS TY +++  LCK  +L  A  L  + +  G+
Sbjct: 567 SNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 130/263 (49%), Gaps = 5/263 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   +F +M+   C       A +    + + GF+ +  T  ++I   C+ G +    
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVV 279

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++ + G APN I +T ++    +    K   E+L  M R+G+  + + + T+I   
Sbjct: 280 GYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGL 339

Query: 126 VKIGRLKEATDYMEQMV-TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            K G  ++A     ++V +DG + ++ +Y  +IN YCKE KL  A +LL  M++QG   +
Sbjct: 340 CKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN 399

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+T LIDG CK GN   A   ++ M K GF  N+  YN I+D L K G +D A  +  
Sbjct: 400 TNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLN 459

Query: 245 SMEVK----DSFTYSSMVHNLCK 263
            + V     D  TY+ ++   C+
Sbjct: 460 KVSVHGLQADGVTYTILMSVHCR 482



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 148/302 (49%), Gaps = 5/302 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           M+    +N     A+ M   +Q  G V    T N ++      G +  A  +  E+   G
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRG 219

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            +P+ +++  ++  C    +     + L+AM  +G+  D      +I AF + G +    
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVV 279

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
            Y  +MV  G+  +++++  LIN  CK+G ++ A+ LL+EM ++G++ + YTHT LIDGL
Sbjct: 280 GYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGL 339

Query: 196 CKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKD 250
           CK G  + A RL L+ +   G+  N+  Y  +++   K+ K++ A  +   M+    V +
Sbjct: 340 CKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN 399

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           + TY++++   CK      A +L+    K G         A++DGL   G   EA ++ +
Sbjct: 400 TNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLN 459

Query: 311 KI 312
           K+
Sbjct: 460 KV 461



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 122/273 (44%), Gaps = 13/273 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+  +++G CK      A  +   + K GF P + TYN +I GLCK G L  A 
Sbjct: 396 LVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAY 455

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G   + +TYT +M    R       L   + M + G+T D   Y T+I+ F
Sbjct: 456 RLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXF 515

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  ++KE+    E+ V+ G+     +Y ++I  YC+ G    A  L   M   G   D 
Sbjct: 516 CRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDS 575

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG------KDGKIDHA 239
            T+  LI GLCK   +  AR   + M   G         C V RL       K      A
Sbjct: 576 ITYGALISGLCKESKLDDARNLYDAMMDKGLSP------CEVTRLTLAYEYCKKDDSSTA 629

Query: 240 INVFESMEVKDSF-TYSSMVHNLCKAKRLPSAS 271
           INV + +E +    T +++V  LC   +L  A+
Sbjct: 630 INVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAA 662



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 32/198 (16%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I+++  C+   T+ +L  F  + K GF P++ +Y  LI   C+  +++ +  + +E
Sbjct: 471 VTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEE 530

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
               G  P   TYT+++    R     L +++   M   G   D   Y  +I+   K  +
Sbjct: 531 AVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESK 590

Query: 131 LKEATDYMEQMVTDGVQ-------------------------LD-------IVSYNTLIN 158
           L +A +  + M+  G+                          LD       I + NTL+ 
Sbjct: 591 LDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVR 650

Query: 159 LYCKEGKLEAAYLLLDEM 176
             C EGKL+ A L   ++
Sbjct: 651 KLCSEGKLDMAALFFHKL 668



 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+PC  T   +    CK   +  A+ +   L+K  ++    T N L++ LC  G+L  A 
Sbjct: 606 LSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIR---TVNTLVRKLCSEGKLDMAA 662

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
               +L D     N +T    M  C+ + KY L  E+
Sbjct: 663 LFFHKLLDKEPNVNRVTLLGFMNKCYESNKYGLVSEL 699


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 146/299 (48%), Gaps = 4/299 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N +++GLCK +  D A+ + + +   G +P+  TYNI+I+G C  G+
Sbjct: 226 MMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQ 285

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +LK++  SG  P+ +TY+ +++   +  +      +  +M RKG   +   Y  
Sbjct: 286 LEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHI 345

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +   G L +  D ++ M+ DG+  +  ++N LI  Y K G ++ A     EM + G
Sbjct: 346 LLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG 405

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GKDGKID 237
              D  +++ +I  LCK G ++ A  H   M   G   N+ ++  ++  L   G+  K++
Sbjct: 406 LRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVE 465

Query: 238 H-AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             A  +       D+   ++++ NLCK  R+  A       +  GV+    +   ++DG
Sbjct: 466 ELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDG 524



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 155/346 (44%), Gaps = 39/346 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P T T+NIM+ G C     + A+R+ + +   G  P++VTY++LI+  CK GR   AR
Sbjct: 266 VMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEAR 325

Query: 66  WILKELGDSGHAPNAITYTTIMK----------------------CCFRNRKYKL----- 98
            +   +   G  PN+  Y  ++                         F +R + +     
Sbjct: 326 SVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAY 385

Query: 99  --------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                    +   + M++ G   D   Y TVI    K GR+++A  +  QMV++G+  +I
Sbjct: 386 AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNI 445

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
           +S+ +LI+  C  G+ +    L  EM  +G   D      ++D LCK G +  A+   + 
Sbjct: 446 ISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDM 505

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           +  IG   ++ +YN ++D     GK+D +I   + M       DS+TY+S+++   K  R
Sbjct: 506 VIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGR 565

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  A  L     +  V+        ++ GL  +G    A+++  K+
Sbjct: 566 VEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKM 611



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 7/271 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV---PELVTYNILIKGLCKAGRLRT 63
           TP   ++N ++ GLC  + +  AL +   +   G     P +V+YN +I G  K G +  
Sbjct: 159 TPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDK 218

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A ++  E+   G  P+ +TY +++    + +     + IL  M  KG   D   Y  +I 
Sbjct: 219 AYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIR 278

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            +  +G+L+EA   +++M   G+Q D+V+Y+ LI  YCK G+   A  + D M ++G + 
Sbjct: 279 GYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKP 338

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +   + IL+ G    G +   R  L+ M + G      A+N ++    K G +D A+  F
Sbjct: 339 NSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAF 398

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSA 270
             M       D  +YS+++H LCK  R+  A
Sbjct: 399 TEMRQNGLRPDVVSYSTVIHILCKTGRVEDA 429



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 150/310 (48%), Gaps = 41/310 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            FNI++    K+   D A+  F  ++++G  P++V+Y+ +I  LCK GR+  A +   ++
Sbjct: 377 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQM 436

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN I++T+++       ++K   E+   M  +G   D     T++    K GR+
Sbjct: 437 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRV 496

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH--- 188
            EA D+ + ++  GV+ D+VSYNTLI+ YC  GK++ +   LD M   G   D +T+   
Sbjct: 497 VEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSL 556

Query: 189 --------------------------------TILIDGLCKAGNIKGAR-LHLEYMNKIG 215
                                            I++ GL +AG I  AR L+++ +++ G
Sbjct: 557 LNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDR-G 615

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
               +E YN ++  L ++  +D A+ +FE +  K    D  T+S +++ L K  R+  A 
Sbjct: 616 TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAK 675

Query: 272 KLLLSCLKSG 281
            L  + +  G
Sbjct: 676 SLFSAMVLRG 685



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P + T+N +LNG  KN   ++AL ++R + +       +T NI++ GL +AGR
Sbjct: 541 MVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGR 600

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +  ++ D G      TY T++     N      L +   ++ K +  D   +  
Sbjct: 601 IVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSI 660

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI A +K+GR+ EA      MV  G   D+++Y+ +I  + +EG LE +  L   MEK G
Sbjct: 661 VINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNG 720

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
              D +   I++  L + G+++ A  +L  +++  F  +LEA
Sbjct: 721 CAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNF--SLEA 760



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 116/261 (44%), Gaps = 8/261 (3%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+ +F  + + G         ILI+  C  GRL  A         +G     +T   ++K
Sbjct: 75  AVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIK 134

Query: 89  -CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-- 145
             C  NR       +   M   GYT D F Y  +I       + +EA + +  M  DG  
Sbjct: 135 GLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGY 194

Query: 146 -VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
               ++VSYNT+I+ + KEG+++ AY L  EM  QG   D  T+  LIDGLCKA  +  A
Sbjct: 195 NCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKA 254

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
              L++M   G   +   YN ++      G+++ A+ + + M       D  TYS ++  
Sbjct: 255 VAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQY 314

Query: 261 LCKAKRLPSASKLLLSCLKSG 281
            CK  R   A  +  S ++ G
Sbjct: 315 YCKIGRCAEARSVFDSMVRKG 335



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 8/290 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +    A   I++   C     D A   F    K G+  + VT N LIKGLC   R
Sbjct: 82  MVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNR 141

Query: 61  LRTA-RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY---TFDGF 116
              A   + + + + G+ P+  +Y  ++K     +K +  LE+L  M   G    + +  
Sbjct: 142 TDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVV 201

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y TVI  F K G + +A     +M+  G+  D+V+YN+LI+  CK   ++ A  +L  M
Sbjct: 202 SYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHM 261

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G   D  T+ I+I G C  G ++ A   L+ M+  G   ++  Y+ ++    K G+ 
Sbjct: 262 FDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRC 321

Query: 237 DHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             A +VF+SM    +  +S  Y  ++H       L     LL   ++ G+
Sbjct: 322 AEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGI 371



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 118/247 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P     N +++ LCK      A   F  +   G  P++V+YN LI G C  G+
Sbjct: 471 MINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGK 530

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +   L  +   G  P++ TY +++   F+N + +  L +   M RK   F       
Sbjct: 531 MDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNI 590

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + GR+  A +   +MV  G QL I +YNT++   C+   ++ A  + +++  + 
Sbjct: 591 MLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKE 650

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           FE D  T +I+I+ L K G I  A+     M   G   ++  Y+ ++    ++G ++ + 
Sbjct: 651 FELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESD 710

Query: 241 NVFESME 247
           N+F SME
Sbjct: 711 NLFLSME 717



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 8/193 (4%)

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           L + + + M R G          +I  F  +GRL  A       +  G ++  V+ N LI
Sbjct: 74  LAVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLI 133

Query: 158 NLYCKEGKLEAAY-LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
              C   + + A  ++   M + G+  D +++  LI GLC     + A   L +M   G 
Sbjct: 134 KGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGG 193

Query: 217 ---DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPS 269
                N+ +YN ++D   K+G++D A  +F  M       D  TY+S++  LCKA+ +  
Sbjct: 194 YNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDK 253

Query: 270 ASKLLLSCLKSGV 282
           A  +L      GV
Sbjct: 254 AVAILQHMFDKGV 266


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +  + DK T+T LI
Sbjct: 246 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLI 305

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 306 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLK 365

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            DS TY+ +++  CK   +   SKLL    + G
Sbjct: 366 PDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDG 398



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 154 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 214 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 273

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A   +++M    ++ D ++Y TLI+  CKEG L++A+     M ++    D+
Sbjct: 274 CKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE 333

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 334 VAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKE 393

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 394 MQ-RDGHVPSVVTYNV 408



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 184 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 243

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K    ++  M  K    D   Y T
Sbjct: 244 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTT 303

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 304 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVG 363

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 364 LKPDSRTYTMIINEFCKKGDVWKGSKL-LKEMQRDGHVPSVVTYNVLMN 411



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 131/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 153

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 154 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 213

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 214 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 273

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+      +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 274 CKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL-D 332

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 333 EVAYTALISGLCQEGRSVDAEKMLREMLNVGLK 365



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 99/194 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +      P+L+TYN LI GLCK G 
Sbjct: 219 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 278

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+      P+ ITYTT++  C +        E    M ++    D   Y  
Sbjct: 279 LKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTA 338

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M+  G++ D  +Y  +IN +CK+G +     LL EM++ G
Sbjct: 339 LISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDG 398

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 399 HVPSVVTYNVLMNG 412


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 138/266 (51%), Gaps = 4/266 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 141 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 200

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +   + T+I    K GR+ 
Sbjct: 201 ASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVD 260

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK+T+T LI
Sbjct: 261 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLI 320

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 321 DGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLX 380

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D+ TY+ +++  CK   +   SKLL
Sbjct: 381 PDAGTYTMIINEFCKKGDVWKGSKLL 406



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 116/241 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 169 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGAN 228

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 229 ELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 288

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D  +Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 289 CKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDD 348

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 349 VAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLLKE 408

Query: 246 M 246
           M
Sbjct: 409 M 409



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 1/207 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+++++NGLCK    D A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 199 MLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGR 258

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++      P+ ITY T++    +    K   +++  M  KG   D F Y T
Sbjct: 259 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTT 318

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A  + ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 319 LIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 378

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARL 206
              D  T+T++I+  CK G++ KG++L
Sbjct: 379 LXPDAGTYTMIINEFCKKGDVWKGSKL 405



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 6/272 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 109 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 168

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++  A 
Sbjct: 169 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGAN 228

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 229 ELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 288

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 289 CKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRL-D 347

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              Y++++  LC+  R   A K+L   L  G+
Sbjct: 348 DVAYTALISGLCQEGRSVDAEKMLREMLSVGL 379



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 9/219 (4%)

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           GY    + +  ++  F K G ++ A    + +   G++  +VSYNTL+N Y + G L+  
Sbjct: 133 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 192

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           + L   M   G   D YT+++LI+GLCK   + GA    + M   G   N   +  ++D 
Sbjct: 193 FRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDG 252

Query: 230 LGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K+G++D A+ +++ M     + D  TY+++++ LCK   L  A  L+      G++  
Sbjct: 253 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPD 312

Query: 286 KSAQKAVVDGLRHSGCRREA-----KKIQSKIRMAKISH 319
           K     ++DG    G    A     + IQ  IR+  +++
Sbjct: 313 KFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAY 351


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 8/314 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T T+N +++  C+      A  +   ++  G    +VT N ++ GLC+AGR   A  
Sbjct: 243 PPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALE 302

Query: 67  ILKE---LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             +E   +   G   NA+TY+T++          + +E+      +G++ D   Y T+I+
Sbjct: 303 FFREKRTVWPEGKG-NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMIS 361

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + GRL++A      M   G +LD  +YN LI  +C++ +L  AY LL EM++ G   
Sbjct: 362 GLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRP 421

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  L+ G CKAG+       L  M   G   ++  +  +V    K GKID A+ + 
Sbjct: 422 DVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRIL 481

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            SM+      ++  Y++++  LCK   +  A +L     +  V    +   A++ GLR  
Sbjct: 482 RSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDK 541

Query: 300 GCRREAKKIQSKIR 313
               +A ++  ++R
Sbjct: 542 NMPEKAFELMDQMR 555



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGR 60
           C  + P   T+ I++NGLCK     +ALR+  G+ +      P++VT N ++ GLCK+GR
Sbjct: 165 CASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGR 224

Query: 61  LRTARWILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           ++ A   +++   S H   PN +TY  ++    R     +  E++  M+ +G   +    
Sbjct: 225 VQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTL 284

Query: 119 CTVIAAFVKIGRLKEATDYMEQ--MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            T++    + GR   A ++  +   V    + + V+Y+TL+        +  A  L  E 
Sbjct: 285 NTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEK 344

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
             +G   D   +  +I GL +AG ++ A      M + GF  + +AYN ++    +  ++
Sbjct: 345 MSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRL 404

Query: 237 DHAINVFESM-EV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             A  + + M EV    D  TY++++   CKA    +  +LL   +  G
Sbjct: 405 HEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDG 453



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 41/281 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWI 67
           T N ++ GLC+   T  AL  FR  +K    PE     VTY+ L+  L     +  A  +
Sbjct: 283 TLNTIVGGLCRAGRTGAALEFFR--EKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMEL 340

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E    GH+P+AI Y T++    +  + +    + S+MK  G+  D   Y  +IA F +
Sbjct: 341 FHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCR 400

Query: 128 IGRLKEATDYMEQM-----------------------------------VTDGVQLDIVS 152
             RL EA + +++M                                   + DG Q  +++
Sbjct: 401 KKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVIT 460

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           + TL++ YCK GK++ A  +L  M++ G   +   +  LID LCK G++  A    + M 
Sbjct: 461 FGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMK 520

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT 253
           +    +N+  +N ++  L      + A  + + M  +  F 
Sbjct: 521 EKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFP 561



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 135/305 (44%), Gaps = 52/305 (17%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARWILKE 70
            FN +L  L + R      R++  +Q    V P++VTY IL+ GLCKAGR+         
Sbjct: 138 AFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRV--------- 188

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCTVIAAFVKI 128
            GD+                         L +L  M R+      D     TV+    K 
Sbjct: 189 -GDA-------------------------LRVLDGMSRQDLDIRPDVVTLNTVVDGLCKS 222

Query: 129 GRLKEATDYMEQMVTD--GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           GR++EA  ++EQ ++   G   + V+YN LI+ +C+ G +  AY L+++ME +G   +  
Sbjct: 223 GRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIV 282

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVF 243
           T   ++ GLC+AG   GA L      +  +     N   Y+ +V  L     +  A+ +F
Sbjct: 283 TLNTIVGGLCRAGRT-GAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELF 341

Query: 244 -ESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            E M      D+  Y +M+  L +A RL  A  +  S  ++G ++   A   ++ G    
Sbjct: 342 HEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGF--- 398

Query: 300 GCRRE 304
            CR++
Sbjct: 399 -CRKK 402



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 49/109 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TF  +++G CK    D ALR+ R + + G  P  V YN LI  LCK G 
Sbjct: 449 MIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGD 508

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           +  A  +  E+ +     N  T+  ++K        +   E++  M+ +
Sbjct: 509 VDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREE 557


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 155/305 (50%), Gaps = 8/305 (2%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             ++NI++ GL +N   + A+ ++  L K G  PE  TY +LI GLCK GRL  A  I K
Sbjct: 361 VVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFK 420

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E  D     +A  Y++++    +  +    + I++ M ++GY  D      +I  FV+  
Sbjct: 421 EAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRAS 480

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           +L++A ++  +M   G    IVSYNTLI   CK  +   AY  + EM ++ ++ D  T +
Sbjct: 481 KLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCS 540

Query: 190 ILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           +L+DGLC+   I+ A  L  + ++K GF  ++  YN ++  L    K++ A+ ++  M+ 
Sbjct: 541 LLMDGLCQEKKIEMALNLWQQALDK-GFKPDITMYNILMHGLCSVCKLEDALQLYSHMKR 599

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
              V +  T ++++  L K +    AS++    LK G+     +    + GL    C R 
Sbjct: 600 STCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGL--CSCSRI 657

Query: 305 AKKIQ 309
           +  I+
Sbjct: 658 SDAIE 662



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 135/267 (50%), Gaps = 5/267 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NIM+NGLCK    D +L ++  + K+    ++ TY+ LI GLC+AG +  A  +
Sbjct: 255 PNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRV 314

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+ +S    +A+T+  ++    R  K K   E+   M ++        Y  +I    +
Sbjct: 315 YKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQ-TVVSYNILIKGLFE 373

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+++EA    E +   G + +  +Y  LI+  CK G+L  A  +  E E    + D Y 
Sbjct: 374 NGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYA 433

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ ++DGLCK G +  A   +  M+K G+  +    N +++   +  K++ AIN F  ME
Sbjct: 434 YSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREME 493

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSA 270
            K       +Y++++  LCKA+R   A
Sbjct: 494 CKGCSPTIVSYNTLIKGLCKAERFSEA 520



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 6/313 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D++P   T+NI++   CK +  + A+ +   +      P++ +Y  LI G+ K G L  A
Sbjct: 146 DVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGA 205

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYCTVIA 123
             +  E+   G   +   Y  ++   F++  Y  G EI   + +    +     Y  +I 
Sbjct: 206 LKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMIN 265

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  E+ +  E+M  +  + D+ +Y++LI+  C+ G ++ A  +  E+ +     
Sbjct: 266 GLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVV 325

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  TH  +++G C+AG IK +      M K    + + +YN ++  L ++GK++ AI+++
Sbjct: 326 DAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQT-VVSYNILIKGLFENGKVEEAISIW 384

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E +  K    +S TY  ++H LCK  RL  A K+         ++   A  ++VDGL   
Sbjct: 385 ELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKE 444

Query: 300 GCRREAKKIQSKI 312
           G   EA  I +++
Sbjct: 445 GRMDEAISIVNQM 457



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 144/311 (46%), Gaps = 14/311 (4%)

Query: 8   PCTATFNI-MLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRTAR 65
           PC     + ++    KN+ ++ AL  F+ +Q   G  P + +YN L+    +      A 
Sbjct: 77  PCKEDVALTVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAE 136

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
              +       +PN  TY  ++K   + ++ +  + +L  M  +    D F Y T+I   
Sbjct: 137 SFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGM 196

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK+G L  A    ++M   GV  D+  YN LI+ + K G  +    + + + K   +C  
Sbjct: 197 VKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVK---DCSV 253

Query: 186 Y----THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           Y    T+ I+I+GLCK G    +    E M K   + ++  Y+ ++  L + G ID A+ 
Sbjct: 254 YPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVR 313

Query: 242 VF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           V+    ES  V D+ T+++M++  C+A ++  + +L +   K   + + S    ++ GL 
Sbjct: 314 VYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYN-ILIKGLF 372

Query: 298 HSGCRREAKKI 308
            +G   EA  I
Sbjct: 373 ENGKVEEAISI 383



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T +++++GLC+ +  + AL +++     GF P++  YNIL+ GLC   +
Sbjct: 527 MLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCK 586

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +   +  S   PN +T  T+M+  ++ R Y+   EI   + + G   D   Y  
Sbjct: 587 LEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNI 646

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
            I       R+ +A +++   +  G+    V++N L+
Sbjct: 647 TIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNILV 683



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 90/192 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C   +P   ++N ++ GLCK      A    + + +  + P+++T ++L+ GLC+  +
Sbjct: 492 MECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKK 551

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + ++  D G  P+   Y  +M       K +  L++ S MKR     +     T
Sbjct: 552 IEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNT 611

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K+   ++A++  + ++ DG+  DI+SYN  I   C   ++  A   L++   +G
Sbjct: 612 LMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRG 671

Query: 181 FECDKYTHTILI 192
                 T  IL+
Sbjct: 672 ILPTAVTWNILV 683



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T N ++ GL K R  + A  ++  + K G  P++++YNI IKGLC   R+  A  
Sbjct: 603 VPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIE 662

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNR 94
            L +  + G  P A+T+  +++     R
Sbjct: 663 FLNDALNRGILPTAVTWNILVRAAVNFR 690


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 154/313 (49%), Gaps = 6/313 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I   ++P   ++N ++ G C+    + A ++++ +  +GF P  VT+ IL+ G  K G 
Sbjct: 275 VIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGD 334

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +  A  I   + D+   P   T   I+K  C   R ++ G ++ +    +G+      Y 
Sbjct: 335 IENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFE-GRDLFNKFVSQGFVPTCMPYN 393

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T+I  F+K G +  A++   +M   G+    V+Y +LI+ +CK   ++ A  LL++M+++
Sbjct: 394 TIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRK 453

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D   +  LIDG CK  ++K A   L  +   G   N   YN ++        ++ A
Sbjct: 454 GLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEA 513

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           I++++ M  +    D  TY+S++  L K+ RL  AS +    L  G+     A   +++G
Sbjct: 514 IDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLING 573

Query: 296 LRHSGCRREAKKI 308
           L + G    A+KI
Sbjct: 574 LCNKGQFENARKI 586



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 133/295 (45%), Gaps = 39/295 (13%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
            ++ P   T  I++ GLCK   +     +F      GFVP  + YN +I G  K G +  
Sbjct: 348 ANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINL 407

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + +E+ + G  P+ +TYT+++    +     L L++L+ MKRKG   D   Y T+I 
Sbjct: 408 ASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLID 467

Query: 124 AFVK-----------------------------------IGRLKEATDYMEQMVTDGVQL 148
            F K                                   +  ++EA D  ++MV +G+  
Sbjct: 468 GFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPC 527

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+ +Y +LI+   K G+L  A  +  EM  +G   D   HT+LI+GLC  G  + AR  L
Sbjct: 528 DLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKIL 587

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVH 259
           E MN      ++  YN ++    K+G +  A  + + M     V D+ TY  +V+
Sbjct: 588 EDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVN 642



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 134/305 (43%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TFN +L+ LCK    + A  ++  +   G  P +V+YN +I G C+   +  A  + KE+
Sbjct: 251 TFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEM 310

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D+G  PNA+T+T +M   F+    +    I   MK             +I    K GR 
Sbjct: 311 LDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRS 370

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            E  D   + V+ G     + YNT+I+ + KEG +  A  +  EM + G      T+T L
Sbjct: 371 FEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSL 430

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           IDG CK  NI  A   L  M + G   +++AY  ++D   K   +  A  +   +     
Sbjct: 431 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL 490

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             + F Y+SM+        +  A  L    +  G+        +++DGL  SG    A  
Sbjct: 491 SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASD 550

Query: 308 IQSKI 312
           I +++
Sbjct: 551 IHTEM 555



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 166/385 (43%), Gaps = 75/385 (19%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF  ++    K      ALR+   +   G    L     L+KG C  G LR+A  +
Sbjct: 108 PPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVL 167

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDG------- 115
           + E+ +SG  PN +TY+ ++  C +N   +   E  S MK KG     Y+ +        
Sbjct: 168 VNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLK 227

Query: 116 ----------------------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
                                 F + T+++   K G++ EA +  ++++  G+  ++VSY
Sbjct: 228 CQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSY 287

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG------------------- 194
           N +I  +C++  + AA  +  EM   GF  +  T TIL+DG                   
Sbjct: 288 NNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKD 347

Query: 195 ----------------LCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
                           LCKAG + +G  L  +++++ GF      YN I+D   K+G I+
Sbjct: 348 ANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQ-GFVPTCMPYNTIIDGFIKEGNIN 406

Query: 238 HAINVFESM-EV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            A NV+  M EV     + TY+S++   CK   +  A KLL    + G+++   A   ++
Sbjct: 407 LASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLI 466

Query: 294 DGLRHSGCRREAKKIQSKIRMAKIS 318
           DG       + A ++ +++R A +S
Sbjct: 467 DGFCKRRDMKSAHELLNELRGAGLS 491



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 132/282 (46%), Gaps = 7/282 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP     NI+L  + +   T  A  +   +   G   +  T +++++   K G +  A 
Sbjct: 1   MTPSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAE 60

Query: 66  WILKELGDSGHAPNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
               +    G   +   Y+  +   C   N  Y L L  L  M+  G+      + +VI 
Sbjct: 61  QHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSL--LREMRAAGWIPPEGTFTSVIT 118

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A VK G + EA    + MV  G  +++    +L+  YC +G L +A +L++E+ + G   
Sbjct: 119 ACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVP 178

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +K T+++LIDG CK GNI+ A      M   G  S++ + N I++   K     +A  +F
Sbjct: 179 NKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMF 238

Query: 244 -ESME--VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +++E  + + FT+++++  LCK  ++  A  L    +  G+
Sbjct: 239 NDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGI 280



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 128/305 (41%), Gaps = 5/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           + N +L G  K +   NA  MF    + G    + T+N L+  LCK G++  A  +  E+
Sbjct: 217 SLNSILEGYLKCQSWQNAFTMFNDALESGLA-NVFTFNTLLSWLCKEGKMNEACNLWDEV 275

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN ++Y  I+    R        ++   M   G+T +   +  ++  + K G +
Sbjct: 276 IAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDI 335

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A     +M    +     +   +I   CK G+      L ++   QGF      +  +
Sbjct: 336 ENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTI 395

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           IDG  K GNI  A      M ++G   +   Y  ++D   K   ID A+ +   M+ K  
Sbjct: 396 IDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGL 455

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D   Y +++   CK + + SA +LL     +G+   +    +++ G ++     EA  
Sbjct: 456 KMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAID 515

Query: 308 IQSKI 312
           +  K+
Sbjct: 516 LYKKM 520



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 4/199 (2%)

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
           E+ + M   G T D F    ++ A +K G + EA  +  Q    GV+LD  +Y+  ++L 
Sbjct: 26  ELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFLQAKARGVELDQEAYSIFVHLL 85

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           C +     A  LL EM   G+   + T T +I    K GN+  A    + M   G   NL
Sbjct: 86  CLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNL 145

Query: 221 EAYNCIVDRLGKDGKIDHAI----NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276
                ++      G +  A+     + ES  V +  TYS ++   CK   +  A +    
Sbjct: 146 AVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSE 205

Query: 277 CLKSGVRILKSAQKAVVDG 295
               G+R    +  ++++G
Sbjct: 206 MKTKGIRSSVYSLNSILEG 224



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P      +++NGLC     +NA ++   +     +P ++ YN LI G  K G 
Sbjct: 555 MLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGN 614

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
           L+ A  +  E+ D G  P+ ITY  ++   F+
Sbjct: 615 LQEAFRLHDEMLDRGLVPDNITYDILVNGKFK 646


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 144/339 (42%), Gaps = 41/339 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGRLRTARW 66
           P    +N M+  L      +    ++  +   G   P+ VTY+ LI   CK GR  +A W
Sbjct: 188 PTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIW 247

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E+ D+G  P A  YT +M   F+       L +   M+ +    D F Y  +I    
Sbjct: 248 LLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLG 307

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-------- 178
           K GRL EA ++  +M  +G + D V  N +IN   K G+L+ A  L +EME         
Sbjct: 308 KAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVV 367

Query: 179 ----------------------------QGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
                                        G     +T++ILIDG CK    + A + LE 
Sbjct: 368 TYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEE 427

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
           M++ GF     AY  ++D LGK  + D A  +F+ ++       +  Y+ M+ +L KA R
Sbjct: 428 MDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGR 487

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           L  A  L     + G      A  A++ GL  +G   EA
Sbjct: 488 LDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEA 526



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 114/227 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T++I+++G CK   T+ A+ +   + + GF P    Y  LI  L KA R   A 
Sbjct: 398 ISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAN 457

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +EL ++  + +A  Y  ++K   +  +    +++   M R G T + + Y  +++  
Sbjct: 458 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGL 517

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G L EA   M +M   G   DI SYN ++N   K G  + A  +L  M++   + D 
Sbjct: 518 ARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDA 577

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
            ++  ++  L  AG  + A   ++ MN IGFD +L  Y+ I++ +GK
Sbjct: 578 VSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGK 624



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 7/265 (2%)

Query: 8   PCTATFNIMLNGL--CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           P   T+N ++  L   K+R ++ +   F  ++  G  P   TY+ILI G CK  R   A 
Sbjct: 364 PSVVTYNTIIKALFESKSRVSEIS-SWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAM 422

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+ + G  P    Y +++    + ++Y L  E+   +K    +     Y  +I   
Sbjct: 423 MLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHL 482

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GRL +A D  ++M   G   ++ +YN L++   + G L+ A   +  M+  G   D 
Sbjct: 483 GKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDI 542

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            ++ I+++ L K G    A   L  M +     +  +YN ++  L   G  + A  + + 
Sbjct: 543 NSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKE 602

Query: 246 MEV----KDSFTYSSMVHNLCKAKR 266
           M       D  TYSS++  + K  +
Sbjct: 603 MNAIGFDYDLITYSSILEAIGKVDQ 627



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 63/124 (50%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    +N +++GL +    D AL   R +Q HG +P++ +YNI++  L K G    A  
Sbjct: 504 TPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMG 563

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +  S   P+A++Y T++        ++   +++  M   G+ +D   Y +++ A  
Sbjct: 564 MLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIG 623

Query: 127 KIGR 130
           K+ +
Sbjct: 624 KVDQ 627


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           AT N +++GLC+ +    A  + R +   G   + +TYNI+I+G CK  ++  A  +  +
Sbjct: 478 ATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDD 537

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+A  + +I+       K +  L +L  MK +G   D   Y T+I  + K   
Sbjct: 538 MIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKD 597

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +++A +Y+ +++  G++ + V YN LI  Y + G +  A  +LD ME  G +    T+  
Sbjct: 598 IQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCS 657

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           L+  +C AG +  A+   E   K   +  +  Y  ++  L K GK+D A+N FE M  + 
Sbjct: 658 LMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRS 717

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              +  TY+++++  CK+     ASKL    + SG+
Sbjct: 718 IPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGI 753



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 145/323 (44%), Gaps = 5/323 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNR-YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           M+   +T  +  FN ++ GL +     ++ +R+   + K G  P         K LC+  
Sbjct: 397 MLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGR 456

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R + A  I  ++ + G   N  T   ++      +  K   E+L  M  KG   D   Y 
Sbjct: 457 RHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYN 516

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +I    K  +++EA    + M+  G + D   +N++I+ YC  GK+E A  LL +M+ +
Sbjct: 517 IMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIE 576

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D  ++  +IDG CKA +I+ A  +L  +   G   N   YN ++   G++G I  A
Sbjct: 577 GVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGA 636

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           I V ++ME       + TY S++H +C A  +  A  +     K+ + +       ++ G
Sbjct: 637 IGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQG 696

Query: 296 LRHSGCRREAKKIQSKIRMAKIS 318
           L   G   EA     ++R   I 
Sbjct: 697 LCKIGKMDEAMNYFEEMRSRSIP 719



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 2/261 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    FN +++  C     + AL +   ++  G  P++V+Y  +I G CKA  
Sbjct: 538 MIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKD 597

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A   L EL   G  PNA+ Y  ++    RN      + +L  M+  G       YC+
Sbjct: 598 IQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCS 657

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G + EA    EQ   + +++ +V Y  +I   CK GK++ A    +EM  + 
Sbjct: 658 LMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRS 717

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +K T+T L+   CK+GN + A    + M   G   +  +YN +V    +   +D AI
Sbjct: 718 IPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKAI 777

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
              ++ E+    T +  + N+
Sbjct: 778 E--KAAEISSIMTQNDCLDNV 796



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 142/323 (43%), Gaps = 40/323 (12%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N++++ LCK+   D A+R+   +++    P +VT+ ILI GL ++ R      +L+E+ 
Sbjct: 269 YNLLMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREME 328

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  PN +    ++    R   +   + +   M  K        Y  +  A  K G ++
Sbjct: 329 GLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEME 388

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLI-NLYCKEGKLEAAYLLLDEMEKQGFE--------C 183
            A   +E+M++ G+ +    +N+++  L  + G+LE+   L+ EM K+G +        C
Sbjct: 389 RAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTAC 448

Query: 184 DKY---------------------------THTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            K                            T   LI GLC+  N+KGA   L  M   G 
Sbjct: 449 TKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGM 508

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASK 272
           + +   YN ++    KD KI+ A+ + + M  K    D++ ++S++H  C   ++  A  
Sbjct: 509 ELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALH 568

Query: 273 LLLSCLKSGVRILKSAQKAVVDG 295
           LL      GV+    +   ++DG
Sbjct: 569 LLGQMKIEGVQPDVVSYGTIIDG 591



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 133/293 (45%), Gaps = 15/293 (5%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL------QKHGFVPELVTYNILIKGLC 56
           C  +TP   ++  M+  LCK    D+  ++   L      Q  G VP    YN+L+  LC
Sbjct: 222 CKTVTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVP----YNLLMDALC 277

Query: 57  KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
           K+GR+  A  +   + +S  AP+ +T+  ++    R+ ++     +L  M+  G T +  
Sbjct: 278 KSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEV 337

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
               +I    + G   EA    ++MV+  ++   V+YN +    CKEG++E A  +L+EM
Sbjct: 338 ICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEM 397

Query: 177 EKQGFECDKYTHTILIDGLC-KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
              G          ++ GL  + G ++     +  M K G   N         +L +  +
Sbjct: 398 LSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRR 457

Query: 236 IDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
              A+ ++  M  K    +  T ++++H LC+ K +  A+++L + +  G+ +
Sbjct: 458 HQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMEL 510



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 7/254 (2%)

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-KGYTFDGFG 117
           G LR A      L     +P+  T   +++   R        ++   M+  K  T +G+ 
Sbjct: 172 GSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYS 231

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI--VSYNTLINLYCKEGKLEAAYLLLDE 175
           Y ++I A  K+G++ +    +  ++  G+Q     V YN L++  CK G+++ A  L   
Sbjct: 232 YTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGR 291

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           ME+        T  ILI+GL ++         L  M  +G   N    N ++D   + G 
Sbjct: 292 MEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGH 351

Query: 236 IDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
              AI +F+ M  K+    + TY+ +   LCK   +  A ++L   L +G+ I      +
Sbjct: 352 FTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNS 411

Query: 292 VVDGLRHSGCRREA 305
           VV GL     R E+
Sbjct: 412 VVAGLLQRTGRLES 425


>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic [Vitis vinifera]
 gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
          Length = 567

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 147/298 (49%), Gaps = 11/298 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N++L GLCK   T+ A++ FR L   GF P +V+YNIL++ LC  GR   A+ +
Sbjct: 235 PNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKEL 294

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+     +P+ +T+  ++     + +    LE+L  M R  +      Y  +IA   K
Sbjct: 295 LAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCK 354

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++      ++QM+      +  +YN  I + C+EGK++ A+ ++  +   G + +  T
Sbjct: 355 EGKVDLVVKCLDQMMYRRCNPNEGTYNA-IAVLCEEGKVQEAFSIIQSL---GNKQNSST 410

Query: 188 HTI---LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           H     +I  LC+ GN   A   L  M K GF  +   Y+ ++  L  +G +D A+ +F 
Sbjct: 411 HDFYKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFS 470

Query: 245 SMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
            ME      D   +++++  LCK ++   +  +    +K G    ++    +V+G+ H
Sbjct: 471 IMEENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAH 528



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 119/246 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    TP  A+   ++N LCK      A+++   ++++G+    VTYN L++GLC  G 
Sbjct: 123 MIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGN 182

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  +  IL +    G  PN  TY+ +++  ++ R     + +L  +  KG   +   Y  
Sbjct: 183 LSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNV 242

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K GR +EA  +   + + G   ++VSYN L+   C EG+ E A  LL EM+   
Sbjct: 243 LLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMDGGE 302

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T  ILI  L   G    A   L+ M++  F +   +YN I+ RL K+GK+D  +
Sbjct: 303 RSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVDLVV 362

Query: 241 NVFESM 246
              + M
Sbjct: 363 KCLDQM 368



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 126/263 (47%), Gaps = 8/263 (3%)

Query: 20  LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           LCK+     A ++   +   G  P+  +   L+  LCK G +  A  +++++ + G+  N
Sbjct: 107 LCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTN 166

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
            +TY ++++    +      L+IL    +KG   + F Y  ++ A  K     EA   ++
Sbjct: 167 TVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLD 226

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           ++V  G + ++VSYN L+   CKEG+ E A     ++  +GF  +  ++ IL+  LC  G
Sbjct: 227 EIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEG 286

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYS 255
             + A+  L  M+      ++  +N ++  L   G+ D A+ V + M        + +Y+
Sbjct: 287 RWEKAKELLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYN 346

Query: 256 SMVHNLCKAKRLPSASKLLLSCL 278
            ++  LCK  ++     L++ CL
Sbjct: 347 PIIARLCKEGKV----DLVVKCL 365



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 1/254 (0%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G+ +P   TFNI++  L  +  TD AL +   + +  F     +YN +I  LCK G++  
Sbjct: 301 GERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVDL 360

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
               L ++      PN  TY  I   C    K +    I+ ++  K  +     Y  VI+
Sbjct: 361 VVKCLDQMMYRRCNPNEGTYNAIAVLC-EEGKVQEAFSIIQSLGNKQNSSTHDFYKGVIS 419

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +  + G    A   + +M   G   D  +Y++LI   C EG L+ A  +   ME+     
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRP 479

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D      LI GLCK      + +  E M K G+  N   Y  IV+ +    +++ A  V 
Sbjct: 480 DVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAVL 539

Query: 244 ESMEVKDSFTYSSM 257
           + + ++ +   S++
Sbjct: 540 KELYLRQAVGRSTL 553



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 97/197 (49%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           L+  LCK+ ++R A  +++ +  SG  P+  + T ++    +       ++++  M+  G
Sbjct: 103 LMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYG 162

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           Y  +   Y +++      G L ++   +++ +  G+  ++ +Y+ L+    KE   + A 
Sbjct: 163 YPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAI 222

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            LLDE+  +G + +  ++ +L+ GLCK G  + A      +   GF  N+ +YN ++  L
Sbjct: 223 RLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSL 282

Query: 231 GKDGKIDHAINVFESME 247
             +G+ + A  +   M+
Sbjct: 283 CYEGRWEKAKELLAEMD 299



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 6/220 (2%)

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           RL  A   L+ +   GH P+    T +M    ++ K +   +++  M   G T D     
Sbjct: 77  RLNDAFLYLEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGTTPDPASCT 136

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++    K G +  A   +E+M   G   + V+YN+L+   C  G L  +  +LD+  K+
Sbjct: 137 FLVNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKK 196

Query: 180 GFECDKYTHTILIDGLCKA-GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           G   + +T++ L++   K  G  +  RL  E + K G   NL +YN ++  L K+G+ + 
Sbjct: 197 GLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAK-GGKPNLVSYNVLLTGLCKEGRTEE 255

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           A+  F  +  K    +  +Y+ ++ +LC   R   A +LL
Sbjct: 256 AMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELL 295



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 4/214 (1%)

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  M  KG+  DG     ++    K  ++++AT  ME M+  G   D  S   L+N  CK
Sbjct: 85  LEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCK 144

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
            G +  A  L+++ME+ G+  +  T+  L+ GLC  GN+  +   L+   K G   N+  
Sbjct: 145 RGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFT 204

Query: 223 YNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           Y+ +++   K+   D AI + + +  K    +  +Y+ ++  LCK  R   A +      
Sbjct: 205 YSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLP 264

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             G      +   ++  L + G   +AK++ +++
Sbjct: 265 SKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEM 298


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 152/322 (47%), Gaps = 20/322 (6%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NI+LN LC           F G+ + G+ P +VTYN LIKGLC   R+  A  +   +
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165

Query: 72  GDSGHAPNAITYTTIMK-CCFR---NRKYKLGLEILSAMKRKGYT--FDGFGYCTVIAAF 125
              G  P+ +TY T++K  C     N   KL  E+L+ + R       +   Y  ++   
Sbjct: 166 QKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGL 225

Query: 126 VKIGRLKEATDYMEQMVT----------DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175
            K+GR  EA    E+M T           G+Q D+V++N LI+  CKEGK+  A  LL  
Sbjct: 226 CKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGV 285

Query: 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           M + G   D  T+  LI+G C  G++  AR     M   G + ++ +YN +++   K  K
Sbjct: 286 MIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLK 345

Query: 236 IDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291
           ++ A+ ++  M +     +  TY S++  +  A ++  A KL       G+         
Sbjct: 346 VEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGI 405

Query: 292 VVDGLRHSGCRREAKKIQSKIR 313
            +DGL  + C  EA K+ ++++
Sbjct: 406 FLDGLCKNDCLFEAMKLFTELK 427



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 151/328 (46%), Gaps = 24/328 (7%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N ++ GLC       A R+F  +QK G  P++VTY  LIKGLC  G +  A  
Sbjct: 136 SPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALK 195

Query: 67  ILKE-LGDSGH-----APNAITYTTIM------------KCCFRNRKYKLGLEILSAMKR 108
           + +E L D         PN ITY  I+            K  F   K + G+ I + M  
Sbjct: 196 LHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ-GM-IPNEMLD 253

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
           +G   D   +  +I    K G++ EA   +  M+  G+  D+V+YN+LI  +C  G L +
Sbjct: 254 QGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNS 313

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  L   M  +G E D  ++ +LI+G  K   ++ A      M  +G   N+  Y+ ++ 
Sbjct: 314 ARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLK 373

Query: 229 RLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            +   GK+D A  +F  M+     ++S+TY   +  LCK   L  A KL      S  ++
Sbjct: 374 GIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKL 433

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQSKI 312
                  ++DGL  +G    A ++  K+
Sbjct: 434 EIENLNCLIDGLCKAGKLETAWELFEKL 461



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 122/250 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+N ++ G C     ++A  +F  +   G  P++++YN+LI G  K  +
Sbjct: 286 MIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLK 345

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+   G  PN ITY +++K  F   K     ++ S MK  G   + + Y  
Sbjct: 346 VEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGI 405

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +    K   L EA     ++ +   +L+I + N LI+  CK GKLE A+ L +++  +G
Sbjct: 406 FLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG 465

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+TI+I G C+ G +  A + ++ M   G   ++  YN ++    +  K++  +
Sbjct: 466 HEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVV 525

Query: 241 NVFESMEVKD 250
            +   M  KD
Sbjct: 526 QLLHRMAQKD 535



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 133/278 (47%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TFN++++ LCK      A ++   + + G VP+LVTYN LI+G C  G 
Sbjct: 251 MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGD 310

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +AR +   +   G  P+ I+Y  ++    +  K +  +++ + M   G   +   Y +
Sbjct: 311 LNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 370

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++      G++ +A      M   G+  +  +Y   ++  CK   L  A  L  E++   
Sbjct: 371 LLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSN 430

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F+ +      LIDGLCKAG ++ A    E ++  G + N+  Y  ++    ++G++D A 
Sbjct: 431 FKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKAN 490

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            + + ME      D  TY++++    ++ +L    +LL
Sbjct: 491 VLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLL 528



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 138/313 (44%), Gaps = 20/313 (6%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           N    +AL  F  + +    P L ++N L+ GL K         +  ++  SG + +  T
Sbjct: 47  NVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
              ++ C     + + G    + + R+GY+ +   Y T+I       R+ EAT    +M 
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLL----LDEMEKQGFEC--DKYTHTILIDGLC 196
             G   D+V+Y TLI   C  G +  A  L    L+++ +    C  +  T+ I++DGLC
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226

Query: 197 KAGNIKGARLHLEYM-------NKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVF--- 243
           K G    A+   E M       N++   G   ++  +N ++D L K+GK+  A  +    
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM 286

Query: 244 -ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            ES  V D  TY+S++   C    L SA +L +S    G      +   +++G   +   
Sbjct: 287 IESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKV 346

Query: 303 REAKKIQSKIRMA 315
            EA K+ +++ + 
Sbjct: 347 EEAMKLYNEMLLV 359


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 8/314 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T T+N +++  C+      A  +   ++  G    +VT N ++ GLC+AGR   A  
Sbjct: 243 PPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALE 302

Query: 67  ILKE---LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             +E   +   G   NA+TY+T++          + +E+      +G++ D   Y T+I+
Sbjct: 303 FFREKRTVWPEGKG-NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMIS 361

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + GRL++A      M   G +LD  +YN LI  +C++ +L  AY LL EM++ G   
Sbjct: 362 GLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRP 421

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  L+ G CKAG+       L  M   G   ++  +  +V    K GKID A+ + 
Sbjct: 422 DVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRIL 481

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
            SM+      ++  Y++++  LCK   +  A +L     +  V    +   A++ GLR  
Sbjct: 482 RSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDK 541

Query: 300 GCRREAKKIQSKIR 313
               +A ++  ++R
Sbjct: 542 NMPEKAFELMDQMR 555



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 144/326 (44%), Gaps = 47/326 (14%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGR 60
           C  + P   T+ I++NGLCK     +ALR+  G+ +      P++VT N ++ GLCK+GR
Sbjct: 165 CASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGR 224

Query: 61  LRTARWILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMK----------- 107
           ++ A   +++   S H   PN +TY  ++    R     +  E++  M+           
Sbjct: 225 VQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTL 284

Query: 108 -----------RKGYTFDGF---------------GYCTVIAAFVKIGRLKEATDYMEQM 141
                      R G   + F                Y T++ A +    +  A +   + 
Sbjct: 285 NTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEK 344

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
           +++G   D + Y T+I+   + G+LE A  +   M++ GF+ D   + ILI G C+   +
Sbjct: 345 MSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRL 404

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS-----FTYSS 256
             A   L+ M ++G   ++  YN ++    K G    A++      + D       T+ +
Sbjct: 405 HEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF-AAVDELLGKMIDDGCQPSVITFGT 463

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGV 282
           +VH  CK  ++  A ++L S  +SG+
Sbjct: 464 LVHGYCKVGKIDEALRILRSMDESGI 489



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 41/281 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWI 67
           T N ++ GLC+   T  AL  FR  +K    PE     VTY+ L+  L     +  A  +
Sbjct: 283 TLNTIVGGLCRAGRTGAALEFFR--EKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMEL 340

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E    GH+P+AI Y T++    +  + +    + S+MK  G+  D   Y  +IA F +
Sbjct: 341 FHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCR 400

Query: 128 IGRLKEATDYMEQM-----------------------------------VTDGVQLDIVS 152
             RL EA + +++M                                   + DG Q  +++
Sbjct: 401 KKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVIT 460

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           + TL++ YCK GK++ A  +L  M++ G   +   +  LID LCK G++  A    + M 
Sbjct: 461 FGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMK 520

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT 253
           +    +N+  +N ++  L      + A  + + M  +  F 
Sbjct: 521 EKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFP 561



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 135/304 (44%), Gaps = 52/304 (17%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARWILKEL 71
           FN +L  L + R      R++  +Q    V P++VTY IL+ GLCKAGR+          
Sbjct: 139 FNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRV---------- 188

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCTVIAAFVKIG 129
           GD+                         L +L  M R+      D     TV+    K G
Sbjct: 189 GDA-------------------------LRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSG 223

Query: 130 RLKEATDYMEQMVTD--GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           R++EA  ++EQ ++   G   + V+YN LI+ +C+ G +  AY L+++ME +G   +  T
Sbjct: 224 RVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVT 283

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVF- 243
              ++ GLC+AG   GA L      +  +     N   Y+ +V  L     +  A+ +F 
Sbjct: 284 LNTIVGGLCRAGR-TGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFH 342

Query: 244 ESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           E M      D+  Y +M+  L +A RL  A  +  S  ++G ++   A   ++ G     
Sbjct: 343 EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGF---- 398

Query: 301 CRRE 304
           CR++
Sbjct: 399 CRKK 402



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P   TF  +++G CK    D ALR+ R + + G  P  V YN LI  LCK G 
Sbjct: 449 MIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGD 508

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  E+ +     N  T+  ++K        +   E++  M R+   F  +    
Sbjct: 509 VDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQM-REERCFPDYVTVD 567

Query: 121 VIAAFVK-IGRLKEATDYMEQ 140
           V+  ++  IG       +M+Q
Sbjct: 568 VLMEWLPVIGETDRLKRFMQQ 588


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 5/280 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T   +++GLCK  +T+ A R+F  L +  G+ P + TY  +I G CK  +L  A  
Sbjct: 327 PNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEM 386

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  + + G  PN  TYTT++    +   +    E++  M ++G++ + + Y  +I    
Sbjct: 387 LLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLC 446

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G L EA   + ++   G+Q D V+Y  L++++C++     + +  ++M K GF  D +
Sbjct: 447 KKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIH 506

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           ++T LI   C+   +K +    E    +G     + Y  ++    + G    A+ +F+ M
Sbjct: 507 SYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRM 566

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                  DS TY +++  LCK  +L  A  L  + +  G+
Sbjct: 567 SNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 5/263 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   +F +M+   C       A R    + + GF+ +  T  ++I   C+ G +    
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVV 279

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               ++ + G APN I +T ++    +    K   E+L  M R+G+  + + + T+I   
Sbjct: 280 GYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGL 339

Query: 126 VKIGRLKEATDYMEQMV-TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            K G  ++A     ++V +DG + ++ +Y  +IN YCKE KL  A +LL  M++QG   +
Sbjct: 340 CKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN 399

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+T LIDG CK GN   A   ++ M K GF  N+  YN I+D L K G +D A  +  
Sbjct: 400 TNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLN 459

Query: 245 SMEV----KDSFTYSSMVHNLCK 263
            + V     D  TY+ ++   C+
Sbjct: 460 KVSVHGLQADGVTYTILMSVHCR 482



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 148/302 (49%), Gaps = 5/302 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           M+    +N     A+ M   +Q  G VP   T N ++      G +  A  +  E+   G
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRG 219

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
            +P+ +++  ++  C    +       L+AM  +G+  D      +I AF + G +    
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVV 279

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
            Y  +MV  G+  +++++  LIN  CK+G ++ A+ LL+EM ++G++ + YTHT LIDGL
Sbjct: 280 GYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGL 339

Query: 196 CKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKD 250
           CK G  + A RL L+ +   G+  N+  Y  +++   K+ K++ A  +   M+    V +
Sbjct: 340 CKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN 399

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           + TY++++   CK      A +L+    K G         A++DGL   G   EA ++ +
Sbjct: 400 TNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLN 459

Query: 311 KI 312
           K+
Sbjct: 460 KV 461



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 122/273 (44%), Gaps = 13/273 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+  +++G CK      A  +   + K GF P + TYN +I GLCK G L  A 
Sbjct: 396 LVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAY 455

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L ++   G   + +TYT +M    R       L   + M + G+T D   Y T+I+ F
Sbjct: 456 RLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTF 515

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  ++KE+    E+ V+ G+     +Y ++I  YC+ G    A  L   M   G   D 
Sbjct: 516 CRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDS 575

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG------KDGKIDHA 239
            T+  LI GLCK   +  AR   + M   G         C V RL       K      A
Sbjct: 576 ITYGALISGLCKESKLDDARNLYDAMMDKGLSP------CEVTRLTLAYEYCKKDDSSTA 629

Query: 240 INVFESMEVKDSF-TYSSMVHNLCKAKRLPSAS 271
           INV + +E +    T +++V  LC   +L  A+
Sbjct: 630 INVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAA 662



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 32/198 (16%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I+++  C+   T+ +L  F  + K GF P++ +Y  LI   C+  +++ +  + +E
Sbjct: 471 VTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEE 530

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
               G  P   TYT+++    R     L +++   M   G   D   Y  +I+   K  +
Sbjct: 531 AVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESK 590

Query: 131 LKEATDYMEQMVTDGVQ-------------------------LD-------IVSYNTLIN 158
           L +A +  + M+  G+                          LD       I + NTL+ 
Sbjct: 591 LDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVR 650

Query: 159 LYCKEGKLEAAYLLLDEM 176
             C EGKL+ A L   ++
Sbjct: 651 KLCSEGKLDMAALFFHKL 668



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+PC  T   +    CK   +  A+ +   L+K  ++    T N L++ LC  G+L  A 
Sbjct: 606 LSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIR---TVNTLVRKLCSEGKLDMAA 662

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
               +L D     N +T    M  C+ + KY L  E+
Sbjct: 663 LFFHKLLDKEPNVNRVTLLGFMNKCYESNKYGLVSEL 699


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 146/311 (46%), Gaps = 4/311 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   T+N ++NGLCK+   + A  +F  + + G  P+  TY  L+   CK G +    
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETE 360

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+ + ++++M    R+      L   +++K  G   D   Y  +I  +
Sbjct: 361 KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 420

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G +  A +   +M+  G  +D+V+YNT+++  CK   L  A  L +EM ++    D 
Sbjct: 421 CRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDS 480

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT TILIDG CK GN++ A    + M +     ++  YN ++D  GK G ID A  ++  
Sbjct: 481 YTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWAD 540

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  K+      +YS +V+ LC    L  A ++    +   ++       +++ G   SG 
Sbjct: 541 MVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGN 600

Query: 302 RREAKKIQSKI 312
             + +    K+
Sbjct: 601 ASDGESFLEKM 611



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 143/313 (45%), Gaps = 6/313 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    + I++ G C+      A+ +   + + G   ++VTYN ++ GLCK   L  A 
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 465

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ +    P++ T T ++    +    +  +E+   MK K    D   Y T++  F
Sbjct: 466 KLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGF 525

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+G +  A +    MV+  +    +SY+ L+N  C +G L  A+ + DEM  +  +   
Sbjct: 526 GKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTV 585

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
                +I G C++GN       LE M   GF  +  +YN ++    ++  +  A  + + 
Sbjct: 586 MICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKK 645

Query: 246 ME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           ME      V D FTY+S++H  C+  ++  A  +L   ++ GV   +S    +++G    
Sbjct: 646 MEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705

Query: 300 GCRREAKKIQSKI 312
               EA +I  ++
Sbjct: 706 DNLTEAFRIHDEM 718



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T NIM+N LCK+   +        +Q+ G  P++VTYN LI      G +  A  ++  +
Sbjct: 237 TLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM 296

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +P   TY T++    ++ KY+   E+ + M R G + D   Y +++    K G +
Sbjct: 297 PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDV 356

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            E       M +  V  D+V ++++++L+ + G L+ A +  + +++ G   D   +TIL
Sbjct: 357 VETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTIL 416

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I G C+ G I  A      M + G   ++  YN I+  L K   +  A  +F  M  +  
Sbjct: 417 IQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERAL 476

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             DS+T + ++   CK   L +A +L     +  +R+       ++DG    G    AK+
Sbjct: 477 FPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKE 536

Query: 308 IQSKI 312
           I + +
Sbjct: 537 IWADM 541



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 125/265 (47%), Gaps = 4/265 (1%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N ++  L +  + + A  +++ + + G    + T NI++  LCK G++      L ++ +
Sbjct: 204 NALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQE 263

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
            G  P+ +TY T++         +   E+++AM  KG++   + Y TVI    K G+ + 
Sbjct: 264 KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYER 323

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A +   +M+  G+  D  +Y +L+   CK+G +     +  +M  +    D    + ++ 
Sbjct: 324 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMS 383

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249
              ++GN+  A ++   + + G   +   Y  ++    + G I  A+N+   M  +    
Sbjct: 384 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAM 443

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLL 274
           D  TY++++H LCK K L  A KL 
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLF 468



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 8/298 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           + F++++    + R    A   F  L+  GF   +   N LI  L + G +  A  + +E
Sbjct: 166 SVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQE 225

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +  SG   N  T   ++    ++ K +     LS ++ KG   D   Y T+I+A+   G 
Sbjct: 226 ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA + M  M   G    + +YNT+IN  CK GK E A  +  EM + G   D  T+  
Sbjct: 286 MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 345

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME--- 247
           L+   CK G++         M       +L  ++ ++    + G +D A+  F S++   
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405

Query: 248 -VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
            + D+  Y+ ++   C+   +  A  L    L+ G  +       ++ GL    C+R+
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGL----CKRK 459



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 91/186 (48%), Gaps = 2/186 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P   +++I++N LC   +   A R++  +      P ++  N +IKG C++G 
Sbjct: 541 MVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGN 600

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFDGFGY 118
                  L+++   G  P+ I+Y T++    R         ++  M+ +  G   D F Y
Sbjct: 601 ASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTY 660

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            +++  F +  ++KEA   + +M+  GV  D  +Y  +IN +  +  L  A+ + DEM +
Sbjct: 661 NSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQ 720

Query: 179 QGFECD 184
           +GF  D
Sbjct: 721 RGFSPD 726



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 108/213 (50%), Gaps = 4/213 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+N +L+G  K    D A  ++  +     +P  ++Y+IL+  LC  G L  A  +  
Sbjct: 515 VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWD 574

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+      P  +   +++K   R+     G   L  M  +G+  D   Y T+I  FV+  
Sbjct: 575 EMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREE 634

Query: 130 RLKEATDYMEQMVTD--GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            + +A   +++M  +  G+  D+ +YN++++ +C++ +++ A ++L +M ++G   D+ T
Sbjct: 635 NMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRST 694

Query: 188 HTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSN 219
           +T +I+G     N+  A R+H E + + GF  +
Sbjct: 695 YTCMINGFVSQDNLTEAFRIHDEMLQR-GFSPD 726



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 4/200 (2%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N   +  +++   + RK +   E  + ++ KG+T        +I + V+IG ++ A    
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           +++   GV +++ + N ++N  CK+GK+E     L +++++G   D  T+  LI      
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTY 254
           G ++ A   +  M   GF   +  YN +++ L K GK + A  VF  M       DS TY
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343

Query: 255 SSMVHNLCKAKRLPSASKLL 274
            S++   CK   +    K+ 
Sbjct: 344 RSLLMEACKKGDVVETEKVF 363


>gi|302765375|ref|XP_002966108.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
 gi|300165528|gb|EFJ32135.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
          Length = 382

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 7/283 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P     +I+++GLCK + + + LR FR +Q  G V + V Y +L+ GL K  RL  A
Sbjct: 8   NMVPNMFLCSILIDGLCKAKRSIDVLRCFRTMQGAGIVADTVIYTVLLSGLWKEKRLDQA 67

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             IL E+ D G  PN +TY +++    +N +     E+   MK    +     Y T++  
Sbjct: 68  LAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECS-PLVTYNTLLDG 126

Query: 125 FVKIGRLKE--ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               G+L+   A + +E M   G   D+++   L++  CKE K+ AA+ +L EM   G  
Sbjct: 127 LFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCKESKVAAAWEVLCEMLDAGCV 186

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +  T   L+ GLC+A  +  A   +  M   G   N+  Y  ++D L K G++  A N+
Sbjct: 187 PNLVTSKSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNL 246

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +E M       D  TYS+++  LCK  R+  A  LL   ++ G
Sbjct: 247 YEVMTGDGCDADVVTYSTLIDGLCKGGRVDEAHLLLARMVRMG 289



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 135/260 (51%), Gaps = 6/260 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNAL--RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
            T+N +L+GL      ++A+   +   ++  G  P+++T  IL+ GLCK  ++  A  +L
Sbjct: 118 VTYNTLLDGLFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCKESKVAAAWEVL 177

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
            E+ D+G  PN +T  +++    R R+    L ++  M  +G T +   Y T+I    K+
Sbjct: 178 CEMLDAGCVPNLVTSKSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKV 237

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           GR+K+A +  E M  DG   D+V+Y+TLI+  CK G+++ A+LLL  M + G      T+
Sbjct: 238 GRVKDAGNLYEVMTGDGCDADVVTYSTLIDGLCKGGRVDEAHLLLARMVRMGTPSSTLTY 297

Query: 189 TIL-IDG-LCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            +   +G + K  ++ KG  +H++   K G+  +    N +VD   K G +  A  VF S
Sbjct: 298 NLQHFEGKMVKVDSLEKGMAIHIQAAEK-GYKRDDFLSNTLVDMYAKCGSMVEAERVFRS 356

Query: 246 MEVKDSFTYSSMVHNLCKAK 265
           M      +++ ++     AK
Sbjct: 357 MPCHSLVSWTVLMLGYVLAK 376



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C   TP   T+  +++GLCK     +A  ++  +   G   ++VTY+ LI GLCK GR
Sbjct: 215 MTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTGDGCDADVVTYSTLIDGLCKGGR 274

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL-----GLEILSAMKRKGYTFDG 115
           +  A  +L  +   G   + +TY       F  +  K+     G+ I      KGY  D 
Sbjct: 275 VDEAHLLLARMVRMGTPSSTLTYNLQH---FEGKMVKVDSLEKGMAIHIQAAEKGYKRDD 331

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQM 141
           F   T++  + K G + EA      M
Sbjct: 332 FLSNTLVDMYAKCGSMVEAERVFRSM 357


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 133/271 (49%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ ++L+GLCK R    A  +   +   G VP +VTYN LI GLC+ GR      +
Sbjct: 194 PGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKL 253

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++    H+P+  TYT ++    ++ K   G ++L     KG   +   Y  +I  + K
Sbjct: 254 LEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCK 313

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G +K A D ++ M  + V   + ++N +I+ +C  GK+  A   L +M   G   +  T
Sbjct: 314 GGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVT 373

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LI G C  G  K A   L+ M + G   + + Y   +D L  +G+++ A ++F  + 
Sbjct: 374 FNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLP 433

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           +K     +  Y+S+VH  C+   + SA  L+
Sbjct: 434 MKGIKAHNVIYTSLVHGYCQVGDIDSAFGLM 464



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 135/287 (47%), Gaps = 4/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++ GLC+    D+  ++   ++     P+  TY  ++ GLCK G+
Sbjct: 222 MVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGK 281

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L E    G A   +TY  ++    +    K  L++L  MKR         +  
Sbjct: 282 VGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNE 341

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F   G++ +A  ++ QM   G+  + V++N+LI+  C  G+ + A  LLD ME+ G
Sbjct: 342 VIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYG 401

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D+ T+ I ID LC  G ++ A      +   G  ++   Y  +V    + G ID A 
Sbjct: 402 VLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAF 461

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            + E M     + D  TY++++  LCK KRL  A  LL    K G+ 
Sbjct: 462 GLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIE 508



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 10/296 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++ I++ GLC     D+A R+F  + +    P + TY +L+ GLCK  R+  A  +L E+
Sbjct: 163 SYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEM 222

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  PN +TY  ++    +  ++    ++L  M+ + ++ D + Y  V+    K G++
Sbjct: 223 VNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKV 282

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
                 + + +  GV L++++YN LIN YCK G ++AA  +L  M++        T   +
Sbjct: 283 GHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEV 342

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I G C  G +  A   L  M   G   N   +N ++      G+   A+ + + ME    
Sbjct: 343 IHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGV 402

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK-SGVRILKSAQKAVVDGLRHSGCR 302
           + D  TY+  +  LC   +L  A   L SCL   G++    A   +   L H  C+
Sbjct: 403 LPDRQTYAIFIDALCDEGQLEEAHS-LFSCLPMKGIK----AHNVIYTSLVHGYCQ 453



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 147/309 (47%), Gaps = 9/309 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N ++N  CK     +A      +++ G  P+  TYN L+ GLC+AG L  A  
Sbjct: 87  PPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACG 146

Query: 67  ILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF-GYCTVIAA 124
           +  ++    G   +  +YT ++K      +      + + M R G+   G   Y  ++  
Sbjct: 147 LFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSR-GWCRPGVHTYTVLLDG 205

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K+ R+ EA   + +MV  GV  ++V+YN LI   C+EG+ +    LL++ME Q    D
Sbjct: 206 LCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPD 265

Query: 185 KYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
            +T+T ++ GLCK G +  GA++  E + K G    +  YN +++   K G +  A++V 
Sbjct: 266 CWTYTQVVHGLCKHGKVGHGAKVLHEAIGK-GVALEVLTYNALINGYCKGGDMKAALDVL 324

Query: 244 ESME---VKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           + M+   V     T++ ++H  C   ++  A   L     +G+        +++ G    
Sbjct: 325 QLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSV 384

Query: 300 GCRREAKKI 308
           G R+ A ++
Sbjct: 385 GERKIALRL 393



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 6/259 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFN +++G C       A+     +   G  P  VT+N LI G C  G  + A 
Sbjct: 332 VNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIAL 391

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  + + G  P+  TY   +       + +    + S +  KG       Y +++  +
Sbjct: 392 RLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGY 451

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++G +  A   ME+M ++    D+ +YNTLI+  CK  +L+ A  LLD+M+KQG E   
Sbjct: 452 CQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTT 511

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV-----DRLGKDGKIDHA- 239
            T  ILI  +        A    E M   G   + + Y   +     +   K+  ID A 
Sbjct: 512 CTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAV 571

Query: 240 INVFESMEVKDSFTYSSMV 258
           + + E+    D  TY++++
Sbjct: 572 VEMHEAGVFPDVETYNAII 590



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 5/227 (2%)

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
           SG  PN  TY T++    +          L  M+  G   D F Y  ++    + G L  
Sbjct: 84  SGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAA 143

Query: 134 ATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           A     QM    G   D  SY  LI   C  G+++ A  +  +M +       +T+T+L+
Sbjct: 144 ACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLL 203

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
           DGLCK   +  A   L  M   G   N+  YN ++  L ++G+ D    + E ME++   
Sbjct: 204 DGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHS 263

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            D +TY+ +VH LCK  ++   +K+L   +  GV +      A+++G
Sbjct: 264 PDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALING 310



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 130/328 (39%), Gaps = 61/328 (18%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P T TFN +++G C       ALR+   ++++G +P+  TY I I  LC  G+L  A 
Sbjct: 367 LSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAH 426

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   L   G   + + YT+++    +         ++  M  +    D   Y T+I   
Sbjct: 427 SLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGL 486

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K+ RL  A D +++M   G++    ++N LI     + K   A  + ++M   G + DK
Sbjct: 487 CKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDK 546

Query: 186 YTHTILI-----DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV------------- 227
            T+T+ I     +G  K  NI  A +    M++ G   ++E YN I+             
Sbjct: 547 QTYTLKISTDWFEGATKEENIDMAVVE---MHEAGVFPDVETYNAIIKAYVDAGLKEKAF 603

Query: 228 ------------------------------------DRLGKDGKIDHAINVFESMEVKDS 251
                                               +++ K   + +   +FE M   D+
Sbjct: 604 FAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDA 663

Query: 252 F----TYSSMVHNLCKAKRLPSASKLLL 275
                TY +++  LC   RL     LLL
Sbjct: 664 APGISTYKALLRGLCNQCRLEEVEWLLL 691



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 5/183 (2%)

Query: 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200
           M+  G   +  +YNTLIN +CK   L  A   L  M + G   D +T+  L+ GLC+AG 
Sbjct: 81  MLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGL 140

Query: 201 IKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYS 255
           +  A  L ++   + G   +  +Y  ++  L   G+ID A  VF  M          TY+
Sbjct: 141 LAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYT 200

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
            ++  LCK +R+  A  LL   +  GV        A++ GL   G   +  K+  K+ + 
Sbjct: 201 VLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQ 260

Query: 316 KIS 318
           + S
Sbjct: 261 RHS 263



 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 14/206 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTD--------------NALRMFRGLQKHGFVPELV 46
           M+   + P   T++I+LN +C    +D              N   +F  + +    P + 
Sbjct: 609 MLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGIS 668

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           TY  L++GLC   RL    W+L ++  +    +      ++ C      Y+   E   +M
Sbjct: 669 TYKALLRGLCNQCRLEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSM 728

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
             + +       C +++     G    A      M+  G   D V +  LI+   ++G  
Sbjct: 729 AHQSFQPGLKSCCLLLSGLCDSGDHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHA 788

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILI 192
            A   +L  M+ +       T+  L+
Sbjct: 789 GACLEMLSVMDAKKCVASTRTYASLV 814



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 18/241 (7%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK--C---- 89
           + + G  P++ TYN +IK    AG    A +   ++      P+  TY+ ++   C    
Sbjct: 574 MHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDD 633

Query: 90  --CFRNRK-YKLG-----LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141
              F N K +K+       E+   M           Y  ++       RL+E    + +M
Sbjct: 634 SDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKM 693

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
             + + LD    + L+  YC       A      M  Q F+    +  +L+ GLC +G+ 
Sbjct: 694 QGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDSGDH 753

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSM 257
             A      M  +G++ +   +  ++D L + G     + +   M+ K     + TY+S+
Sbjct: 754 GMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDAKKCVASTRTYASL 813

Query: 258 V 258
           V
Sbjct: 814 V 814


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 4/305 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ I+++G C     +NA+++   +   G  P    Y  ++  LC  G +  A  +
Sbjct: 289 PDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRV 348

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++++       +   YTT++                  M+RKG   DG  Y T+I    +
Sbjct: 349 VEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCR 408

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              L+EA   +++M    + +D V+Y  LI+ YCK GK+  A+ + + M ++G   +  T
Sbjct: 409 AVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVT 468

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L DGLCK G+++ A   L  M+  G + N   YN +++ L K G ++ A+     M+
Sbjct: 469 YTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMD 528

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D +TY++++  LCK+  L  A  LL   L  G++        +++G   SG   
Sbjct: 529 TACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVE 588

Query: 304 EAKKI 308
             KK+
Sbjct: 589 GGKKL 593



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 147/306 (48%), Gaps = 4/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  M+NGLC+    + A ++ + +       + VTY +LI G CK G++  A  +   +
Sbjct: 398 TYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAM 457

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN +TYT +     +    +   E+L  M  KG   +   Y ++I    K G L
Sbjct: 458 VQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL 517

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           ++A   M  M T  ++ D+ +Y TLI+  CK G L+ A+ LL EM  +G +    T+ +L
Sbjct: 518 EQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVL 577

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD- 250
           ++G C +G ++G +  L++M +     N   YN ++ +   +  +     +++ M  +D 
Sbjct: 578 MNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDV 637

Query: 251 ---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
                TY+ ++   CKA+ +  A       ++ G R+  ++  A++  L       EA++
Sbjct: 638 GPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARE 697

Query: 308 IQSKIR 313
           +   +R
Sbjct: 698 LFHDMR 703



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 137/278 (49%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G + P    +  ++  LC   +  +ALR+   + +   + +   Y  ++ G C  G 
Sbjct: 317 MVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGD 376

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L +AR    E+   G A + +TYTT++    R  + +   ++L  M  +    D   Y  
Sbjct: 377 LVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTV 436

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G++ EA      MV  GV  ++V+Y  L +  CK+G ++AA  LL EM  +G
Sbjct: 437 LIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKG 496

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E +  T+  LI+GLCKAG ++ A   +  M+      ++  Y  ++D L K G +D A 
Sbjct: 497 LELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAH 556

Query: 241 NVFESM---EVKDSF-TYSSMVHNLCKAKRLPSASKLL 274
           ++ + M    +K +  TY+ +++  C + R+    KLL
Sbjct: 557 SLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLL 594



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 4/267 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           A +  +L+G C      +A R F  +Q+ G   + VTY  +I GLC+A  L  A  +L+E
Sbjct: 362 ALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQE 421

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +       + +TYT ++    +  K     ++ +AM ++G T +   Y  +     K G 
Sbjct: 422 MWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGD 481

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++ A + + +M   G++L+  +YN+LIN  CK G LE A   + +M+    + D YT+T 
Sbjct: 482 VQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTT 541

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           LID LCK+G++  A   L+ M   G    +  YN +++     G+++    + + M  K 
Sbjct: 542 LIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKN 601

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKL 273
              ++ TY+S++   C    + S +++
Sbjct: 602 IHPNAATYNSLMKQYCIENNMKSTTEI 628



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 152/314 (48%), Gaps = 15/314 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P     N +L+ L      D A+ +F+ L        + +YNIL+K LC AGR++ AR
Sbjct: 228 ISPSPEACNAVLSRLP----LDEAIELFQELPHKN----VCSYNILLKALCDAGRVKDAR 279

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+     AP+ +TY  ++       + +  +++L  M   G   +   Y +V+A  
Sbjct: 280 QLFDEMAS---APDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALL 336

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G + +A   +E MV   V LD   Y T+++ +C +G L +A    DEM+++G   D 
Sbjct: 337 CDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDG 396

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+T +I+GLC+A  ++ A   L+ M     D +   Y  ++D   K GK+  A  +  +
Sbjct: 397 VTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNA 456

Query: 246 M----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M       +  TY+++   LCK   + +A++LL      G+ +      ++++GL  +G 
Sbjct: 457 MVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGY 516

Query: 302 RREAKKIQSKIRMA 315
             +A +  + +  A
Sbjct: 517 LEQAMRTMADMDTA 530



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 1/261 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP   T+  + +GLCK      A  +   +   G      TYN LI GLCKAG 
Sbjct: 457 MVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGY 516

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A   + ++  +   P+  TYTT++    ++        +L  M  KG       Y  
Sbjct: 517 LEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNV 576

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   GR++     ++ M+   +  +  +YN+L+  YC E  +++   +   M  + 
Sbjct: 577 LMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRD 636

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              ++ T+ ILI G CKA N+K A    + M + GF     +Y+ ++  L K  K   A 
Sbjct: 637 VGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEAR 696

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
            +F  M  K+  T  S V++ 
Sbjct: 697 ELFHDMR-KEGLTAESDVYDF 716



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N+++NG C +   +   ++   + +    P   TYN L+K  C    
Sbjct: 562 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENN 621

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +++   I K +      PN  TY  ++K   + R  K  L     M +KG+      Y  
Sbjct: 622 MKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSA 681

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           +I    K  +  EA +    M  +G+  +   Y+  I+L   E  LE+   L DE+
Sbjct: 682 LIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDEL 737


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 6/295 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N +++ LCK R    AL + + +   G  P+ +T++ LI GLC+ GR++ A 
Sbjct: 360 LPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAE 419

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +L+E       PN  +YT+++   C R  +  +   +L  M  +G+T D   +  +I  
Sbjct: 420 RLLRETTRWELNPNLSSYTSLIHGFCVRG-EVIVASNLLVEMMERGHTPDVVTFGALIHG 478

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            V  G++ EA    E+M    +  D   YN LI+  CK+  L AA  L++EM +Q    D
Sbjct: 479 LVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPD 538

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           KY +T LIDG  +  ++  AR   E+M + G   ++  YN ++    + G ++ A+    
Sbjct: 539 KYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMS 598

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           +M     + D FTY++++    K   +  A  LL   +K   +    A  ++++G
Sbjct: 599 TMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLING 653



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 121/262 (46%), Gaps = 4/262 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   TF  +++GL        AL +   +     +P+   YN+LI GLCK   L  AR 
Sbjct: 466 TPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARN 525

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +++E+ +    P+   YTT++    RN       +I   M++KG   D  GY  +I  + 
Sbjct: 526 LIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYC 585

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G + EA + M  M   G   D  +Y TLI  Y K+G +  A  LL +M K+  + +  
Sbjct: 586 QFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVV 645

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            ++ LI+G CK G+   A      M   G   N+  Y  ++  L K  K+  A   FE M
Sbjct: 646 AYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYM 705

Query: 247 EV----KDSFTYSSMVHNLCKA 264
            +     + +T  S+V  LC +
Sbjct: 706 LLNQCSPNDYTLHSLVTGLCNS 727



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 131/310 (42%), Gaps = 39/310 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M  G   P   TF+ +++GLC+      A R+ R   +    P L +Y  LI G C  G 
Sbjct: 390 MFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGE 449

Query: 61  LRTARWILKELGDSGHAPNAIT-----------------------------------YTT 85
           +  A  +L E+ + GH P+ +T                                   Y  
Sbjct: 450 VIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNV 509

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    + +       ++  M  +    D + Y T+I  F++   L EA    E M   G
Sbjct: 510 LISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKG 569

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  D+V YN +I  YC+ G +  A   +  M K G   D++T+T LI G  K GNI GA 
Sbjct: 570 IHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGAL 629

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNL 261
             L  M K     N+ AY+ +++   K G  D A  +F SME +  F    TY+ ++ +L
Sbjct: 630 SLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSL 689

Query: 262 CKAKRLPSAS 271
            K  ++  A+
Sbjct: 690 FKKDKVVRAA 699



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 4/311 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    +N++++G C+       + +   ++  G +P +VTY  L+  L + G L     
Sbjct: 291 VPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIAS 350

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E+ +    PN   Y +++    + R     L +L  M   G   D   + T+I+   
Sbjct: 351 LLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLC 410

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + GR++EA   + +     +  ++ SY +LI+ +C  G++  A  LL EM ++G   D  
Sbjct: 411 QEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVV 470

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T   LI GL  AG +  A L  E M       +   YN ++  L K   +  A N+ E M
Sbjct: 471 TFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEM 530

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
             +    D + Y++++    + + L  A K+     + G+        A++ G    G  
Sbjct: 531 LEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMM 590

Query: 303 REAKKIQSKIR 313
            EA +  S +R
Sbjct: 591 NEAVECMSTMR 601



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 35/211 (16%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P    +  +++G  +N   D A ++F  +++ G  P++V YN +IKG C+ G 
Sbjct: 530 MLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGM 589

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   +  +   G  P+  TYTT+                                  
Sbjct: 590 MNEAVECMSTMRKVGRIPDEFTYTTL---------------------------------- 615

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I  + K G +  A   +  M+    Q ++V+Y++LIN YCK G  +AA  L   ME QG
Sbjct: 616 -IGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQG 674

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
              +  T+TILI  L K   +  A ++ EYM
Sbjct: 675 LFPNVITYTILIGSLFKKDKVVRAAMYFEYM 705



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 133/333 (39%), Gaps = 74/333 (22%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +M+ GLC     +  L++       G VP  V YN+LI G C+ G +     +L E+   
Sbjct: 264 VMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAK 323

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P  +TY T+M                S + RKG                KI  L   
Sbjct: 324 GLLPTVVTYGTLM----------------SWLGRKG-------------DLEKIASL--L 352

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
           ++  E+ +   VQ+    YN++I+  CK      A ++L +M   G + D  T + LI G
Sbjct: 353 SEMRERRLPPNVQI----YNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISG 408

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAY-----------------NCIVDRLGKD---- 233
           LC+ G ++ A   L    +   + NL +Y                 N +V+ + +     
Sbjct: 409 LCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPD 468

Query: 234 --------------GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
                         G++  A+ V E M  +    D+  Y+ ++  LCK K LP+A  L+ 
Sbjct: 469 VVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIE 528

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             L+  V   K     ++DG   +    EA+KI
Sbjct: 529 EMLEQNVHPDKYVYTTLIDGFIRNESLDEARKI 561


>gi|242090439|ref|XP_002441052.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
 gi|241946337|gb|EES19482.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
          Length = 548

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 139/279 (49%), Gaps = 5/279 (1%)

Query: 1   MICGDLTPCTATFNIMLNGL-CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           M    + P TA   +++    C+  + D A  + R +  +G  P++VTY+ LI GLC AG
Sbjct: 123 MAADGVVPDTAACTVLVGVYACRLHWFDAAYEVVRWMAANGVAPDVVTYSTLISGLCSAG 182

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+  A  +L  + + G  PNA TYT I+     +       ++L  M   G+      Y 
Sbjct: 183 RVAEALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKDLLETMVAAGFAPSTATYN 242

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++ A  K    +E    +E+    G   D ++Y+T ++  CK G+++ +  L+D+M   
Sbjct: 243 VLVEALCKACAFEEVDKLLEESSAKGWTPDTITYSTYMDGLCKNGRVDKSLALVDKMLSV 302

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   ++ T  IL+DG+C+      A+  LE   +IG+  N+  YN ++ RL  + +    
Sbjct: 303 GLRPNEITLNILLDGVCRRSTAWAAKCLLECSAEIGWHVNVVNYNTVMRRLCDERRWLAV 362

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           + +F  M  K    +S+T+S ++H+LCK  +L  A  LL
Sbjct: 363 VKLFVDMVKKGIAPNSWTFSIVIHSLCKLGKLHEALCLL 401



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 9/309 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +L+  C +     A  +   +   GF P   TYN+L++ LCKA        +
Sbjct: 201 PNAHTYTPILHAYCTSGMIHEAKDLLETMVAAGFAPSTATYNVLVEALCKACAFEEVDKL 260

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E    G  P+ ITY+T M    +N +    L ++  M   G   +      ++    +
Sbjct: 261 LEESSAKGWTPDTITYSTYMDGLCKNGRVDKSLALVDKMLSVGLRPNEITLNILLDGVCR 320

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                 A   +E     G  +++V+YNT++   C E +  A   L  +M K+G   + +T
Sbjct: 321 RSTAWAAKCLLECSAEIGWHVNVVNYNTVMRRLCDERRWLAVVKLFVDMVKKGIAPNSWT 380

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +I+I  LCK G +  A   L  +    F +N+  YN ++  L   GK   A  +   M 
Sbjct: 381 FSIVIHSLCKLGKLHEA---LCLLGSEEFVANVVTYNTLIRHLNFLGKSCEAYLLLHEMI 437

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            K    +  TYS ++  LCK  +   A   L  C++ G+   K+A  +++ GL   G  R
Sbjct: 438 EKGIAPNDITYSLLIDCLCKEGKFLVALSCLNQCIEGGLS--KAAVSSILRGLIAGGKLR 495

Query: 304 EAKKIQSKI 312
           E + +   I
Sbjct: 496 ELQALIGWI 504



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 3/241 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P TAT+N+++  LCK    +   ++       G+ P+ +TY+  + GLCK GR
Sbjct: 229 MVAAGFAPSTATYNVLVEALCKACAFEEVDKLLEESSAKGWTPDTITYSTYMDGLCKNGR 288

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  +  ++ ++   G  PN IT   ++    R         +L      G+  +   Y T
Sbjct: 289 VDKSLALVDKMLSVGLRPNEITLNILLDGVCRRSTAWAAKCLLECSAEIGWHVNVVNYNT 348

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V+       R          MV  G+  +  +++ +I+  CK GKL  A  LL   E   
Sbjct: 349 VMRRLCDERRWLAVVKLFVDMVKKGIAPNSWTFSIVIHSLCKLGKLHEALCLLGSEE--- 405

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
           F  +  T+  LI  L   G    A L L  M + G   N   Y+ ++D L K+GK   A+
Sbjct: 406 FVANVVTYNTLIRHLNFLGKSCEAYLLLHEMIEKGIAPNDITYSLLIDCLCKEGKFLVAL 465

Query: 241 N 241
           +
Sbjct: 466 S 466



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 34/260 (13%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP T T++  ++GLCKN   D +L +   +   G  P  +T NIL+ G+C+      A+ 
Sbjct: 270 TPDTITYSTYMDGLCKNGRVDKSLALVDKMLSVGLRPNEITLNILLDGVCRRSTAWAAKC 329

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+   + G   N + Y T+M+     R++   +++   M +KG   + + +  VI +  
Sbjct: 330 LLECSAEIGWHVNVVNYNTVMRRLCDERRWLAVVKLFVDMVKKGIAPNSWTFSIVIHSLC 389

Query: 127 KIGRLKEA-------------TDY-------------------MEQMVTDGVQLDIVSYN 154
           K+G+L EA               Y                   + +M+  G+  + ++Y+
Sbjct: 390 KLGKLHEALCLLGSEEFVANVVTYNTLIRHLNFLGKSCEAYLLLHEMIEKGIAPNDITYS 449

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
            LI+  CKEGK   A   L++  + G    K   + ++ GL   G ++  +  + ++   
Sbjct: 450 LLIDCLCKEGKFLVALSCLNQCIEGGL--SKAAVSSILRGLIAGGKLRELQALIGWILGQ 507

Query: 215 GFDSNLEAYNCIVDRLGKDG 234
           GF  ++  Y  ++    K G
Sbjct: 508 GFIIDVYMYQELIISFCKKG 527



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P + TF+I+++ LCK      AL +   L    FV  +VTYN LI+ L   G+
Sbjct: 369 MVKKGIAPNSWTFSIVIHSLCKLGKLHEALCL---LGSEEFVANVVTYNTLIRHLNFLGK 425

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L E+ + G APN ITY+ ++ C  +  K+ + L  L+     G +       +
Sbjct: 426 SCEAYLLLHEMIEKGIAPNDITYSLLIDCLCKEGKFLVALSCLNQCIEGGLSKAAVS--S 483

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
           ++   +  G+L+E    +  ++  G  +D+  Y  LI  +CK+G
Sbjct: 484 ILRGLIAGGKLRELQALIGWILGQGFIIDVYMYQELIISFCKKG 527



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLY-CKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           A   +  M  DGV  D  +   L+ +Y C+    +AAY ++  M   G   D  T++ LI
Sbjct: 116 ALAVLNAMAADGVVPDTAACTVLVGVYACRLHWFDAAYEVVRWMAANGVAPDVVTYSTLI 175

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            GLC AG +  A   L+ M + G   N   Y  I+      G I  A ++ E+M      
Sbjct: 176 SGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKDLLETMVAAGFA 235

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
             + TY+ +V  LCKA       KLL
Sbjct: 236 PSTATYNVLVEALCKACAFEEVDKLL 261


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 145/312 (46%), Gaps = 9/312 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G   P   ++  ++NG  K   +D A   +  +   G +P++VTYN +I  LCKA  +  
Sbjct: 190 GGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDK 249

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  P+ +TY +I+     + + K  +  L  M+  G   D   Y  ++ 
Sbjct: 250 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ +I +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D Y  +ILI      G +  A L    M + G + N   Y  ++  L K G+++ A+  F
Sbjct: 370 DHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E M        +  Y+S++H LC   +   A +L+L  L  G+ +      +++D    S
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID----S 485

Query: 300 GCRREAKKIQSK 311
            C +E + I+S+
Sbjct: 486 HC-KEGRVIESE 496



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 151/312 (48%), Gaps = 4/312 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    F+I++         D A+ +F  +++ G  P  VTY  +I  LCK+GR
Sbjct: 362 MVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A    +++ D G +P  I Y +++       K++   E++  M  +G   +   + +
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 481

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +  K GR+ E+    E MV  GV+ ++++YNTLIN YC  GK++ A  LL  M   G
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
            + +  T++ LI+G CK   ++ A +  + M   G   ++  YN I+  L +  +   A 
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 240 ---INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              + + ES    +  TY+ ++H LCK K    A ++  +     +++       ++D L
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661

Query: 297 RHSGCRREAKKI 308
              G   EAK +
Sbjct: 662 LKVGRNDEAKDL 673



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 8/316 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++++++ LCKN     A ++F  + K G  PE+ TY  L++G    G L    
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +L  +  +G  P+   + +I+ C + N+ K    + + S M+++G   +   Y  VI  
Sbjct: 357 GLLDLMVRNGIHPDHYVF-SILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGI 415

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR+++A  Y EQM+ +G+    + YN+LI+  C   K E A  L+ EM  +G   +
Sbjct: 416 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
                 +ID  CK G +  +    E M +IG   N+  YN +++     GK+D A+ +  
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 245 SMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M       ++ TYS++++  CK  R+  A  L      SGV         ++ GL  + 
Sbjct: 536 GMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT- 594

Query: 301 CRREAKKIQSKIRMAK 316
            RR A   +  +R+ +
Sbjct: 595 -RRTAAAKELYVRITE 609



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 153/309 (49%), Gaps = 4/309 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++  LCK +  D A+ +   + K+G +P+ +TYN ++ G C +G+ + A 
Sbjct: 227 ILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 286

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             LK++   G  P+ +TY+ +M    +N +     +I  +M ++G   +   Y T++  +
Sbjct: 287 GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGY 346

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L E    ++ MV +G+  D   ++ LI  Y  +GK++ A L+  +M +QG   + 
Sbjct: 347 ATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNA 406

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  +I  LCK+G ++ A L+ E M   G       YN ++  L    K + A  +   
Sbjct: 407 VTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILE 466

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M  +    ++  ++S++ + CK  R+  + KL    ++ GV+        +++G   +G 
Sbjct: 467 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGK 526

Query: 302 RREAKKIQS 310
             EA K+ S
Sbjct: 527 MDEAMKLLS 535



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 145/333 (43%), Gaps = 47/333 (14%)

Query: 12  TFNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            F  +L GLC ++ T +A+ +  R + + G +P + +YNIL+KGLC   R + A  +L  
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183

Query: 71  LGDS---GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + D    G  P+ ++YTT++   F+             M  +G   D   Y ++IAA  K
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A + +  MV +GV  D ++YN++++ YC  G+ + A   L +M   G E D  T
Sbjct: 244 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVT 303

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD------------------- 228
           +++L+D LCK G    AR   + M K G    +  Y  ++                    
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363

Query: 229 ----------------RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
                                GK+D A+ VF  M  +    ++ TY +++  LCK+ R+ 
Sbjct: 364 RNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
            A       +  G+    S    V + L H  C
Sbjct: 424 DAMLYFEQMIDEGL----SPGNIVYNSLIHGLC 452



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 146/318 (45%), Gaps = 10/318 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ I++   C+    D        + K GF  + + +  L+KGLC   R   A
Sbjct: 82  EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 141

Query: 65  -RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM---KRKGYTFDGFGYC 119
              +L+ + + G  PN  +Y  ++K  C  NR  +  LE+L  M   +  G   D   Y 
Sbjct: 142 MDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQE-ALELLHMMADDRGGGSPPDVVSYT 200

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           TVI  F K G   +A     +M+  G+  D+V+YN++I   CK   ++ A  +L+ M K 
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN 260

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T+  ++ G C +G  K A   L+ M   G + ++  Y+ ++D L K+G+   A
Sbjct: 261 GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEA 320

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F+SM  +    +  TY +++        L     LL   +++G+         ++  
Sbjct: 321 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICA 380

Query: 296 LRHSGCRREAKKIQSKIR 313
             + G   +A  + SK+R
Sbjct: 381 YANQGKVDQAMLVFSKMR 398



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 43/297 (14%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN +++  CK      + ++F  + + G  P ++TYN LI G C AG++  A  +L 
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  PN +TY+T++                             GYC       KI 
Sbjct: 536 GMVSVGLKPNTVTYSTLIN----------------------------GYC-------KIS 560

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A    ++M + GV  DI++YN ++    +  +  AA  L   + + G + +  T+ 
Sbjct: 561 RMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA--YNCIVDRLGKDGKIDHAINVFESME 247
           I++ GLCK   +    L + + N    D  LEA  +N ++D L K G+ D A ++F +  
Sbjct: 621 IILHGLCK-NKLTDDALQM-FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFS 678

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
               V + +TY  M  N+     L    +L LS   +G  +       +V  L   G
Sbjct: 679 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 735



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 20/295 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++NG C     D A+++  G+   G  P  VTY+ LI G CK  R+  A  +
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVL 568

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            KE+  SG +P+ ITY  I++  F+ R+     E+   +   G   +   Y  ++    K
Sbjct: 569 FKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 628

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                +A    + +    ++L+  ++N +I+   K G+ + A  L       G   + +T
Sbjct: 629 NKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWT 688

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI-NVFESM 246
           + ++      A NI G  L LE ++++    ++E   C VD     G ++  +  + +  
Sbjct: 689 YRLM------AENIIGQGL-LEELDQLFL--SMEDNGCTVD----SGMLNFIVRELLQRG 735

Query: 247 EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-----VRILKSAQKAVVDGL 296
           E+  + TY SM+     +    +AS L +  L  G      R L    K+ ++ L
Sbjct: 736 EITRAGTYLSMIDEKHFSLEASTAS-LFIDLLSGGKYQEYYRFLPEKYKSFIESL 789



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 45/257 (17%)

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY--MEQMVTDGVQLDIVSYNTLINL 159
           +   + R+G     +G    +A   +       + Y  M +   D V  D+ +Y  LI  
Sbjct: 37  VFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGC 96

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDS 218
            C+ G+L+  +  L  + K+GF  D    T L+ GLC       A  + L  M ++G   
Sbjct: 97  CCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIP 156

Query: 219 NLEAYNCIV---------------------DRLG-----------------KDGKIDHAI 240
           N+ +YN ++                     DR G                 K+G  D A 
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           + +  M     + D  TY+S++  LCKA+ +  A ++L + +K+GV        +++ G 
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276

Query: 297 RHSGCRREAKKIQSKIR 313
             SG  +EA     K+R
Sbjct: 277 CSSGQPKEAIGFLKKMR 293



 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           DL     TFNIM++ L K    D A  +F     +G VP   TY ++ + +   G L   
Sbjct: 646 DLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEEL 705

Query: 65  RWILKELGDSG 75
             +   + D+G
Sbjct: 706 DQLFLSMEDNG 716


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 148/306 (48%), Gaps = 5/306 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   TFN +++G CK    D A+ +   ++K    P ++T+N L+ GLCKA R+  A
Sbjct: 131 NLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEA 190

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRK-YKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           R +L E+  +G  P+  TY+ I     ++       L++      KG   D +    ++ 
Sbjct: 191 RCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLN 250

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G++++A + ++ +V  G+    V YNT++N YC+ G ++ A L +++ME +G   
Sbjct: 251 GLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRP 310

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +      +ID  C+   I  A   ++ M   G   ++E YN ++D  G+         + 
Sbjct: 311 NCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQIL 370

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           E ME      +  +Y S+++ LCK  ++  A  +L   +  GV    +    ++DG    
Sbjct: 371 EEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTV 430

Query: 300 GCRREA 305
           G  REA
Sbjct: 431 GKLREA 436



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 130/280 (46%), Gaps = 34/280 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    +N++++G C       ALR F  + K+G    +VTYN LIKGLCK G+
Sbjct: 408 MVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGK 467

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-----TF-- 113
           L+ A  +   +  +GH P+ ITY +++         +  LE+   MK+ G      TF  
Sbjct: 468 LKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHP 527

Query: 114 ---------------------------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
                                      D   Y  +I  + + G +++A    ++MV  GV
Sbjct: 528 LISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGV 587

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + D  +YN+LI  + KEGKL     L+D+M+ +G   +  T+++LI G C   +  GA +
Sbjct: 588 RPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYV 647

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
               M + GF  N+   N +   L KDG++  A ++   M
Sbjct: 648 WYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEM 687



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 42/272 (15%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+ +F  +++   VP +  YN+LI GLCK  R+R A  +  E+      PN +T+ T++ 
Sbjct: 85  AMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLID 144

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
                                       GYC       K G +  A    E+M  + V+ 
Sbjct: 145 ----------------------------GYC-------KAGEVDVAIGLRERMKKEKVEP 169

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
            I+++N+L++  CK  ++E A  +L+E++  GF  D +T++I+ DGL K+ +  GA L L
Sbjct: 170 SIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDL 229

Query: 209 EYMNKIGFDSNLEAYNC--IVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLC 262
            Y   IG    ++ Y C  +++ L K+GK++ A  V +S+     V     Y+++V+  C
Sbjct: 230 -YREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYC 288

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           +   +  A   +      G+R    A  +V+D
Sbjct: 289 QIGDMDRAILTIEQMESRGLRPNCIAFNSVID 320



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 106/242 (43%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N ++NG C+    D A+     ++  G  P  + +N +I   C+   +  A 
Sbjct: 273 LVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAE 332

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             +K++   G AP+  TY  ++    R   +    +IL  M+  G   +   Y ++I   
Sbjct: 333 EWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCL 392

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G++ EA   +  MV  GV  +   YN LI+  C  GKL  A    DEM K G     
Sbjct: 393 CKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATI 452

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI GLCK G +K A      +   G   ++  YN ++      G     + ++E+
Sbjct: 453 VTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYET 512

Query: 246 ME 247
           M+
Sbjct: 513 MK 514



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 138/286 (48%), Gaps = 6/286 (2%)

Query: 16  MLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           ML  +C +++       ++  +++ G +P      ++++ L ++ +      + KE+   
Sbjct: 1   MLLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGL 60

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P+ + Y   M    +    KL +E+   MKR+    + F Y  +I    K  R+++A
Sbjct: 61  GFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDA 120

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
                +M    +  + V++NTLI+ YCK G+++ A  L + M+K+  E    T   L+ G
Sbjct: 121 EKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSG 180

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK-DGKIDHAINVFESMEVK---- 249
           LCKA  I+ AR  L  +   GF  +   Y+ I D L K D     A++++     K    
Sbjct: 181 LCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKI 240

Query: 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           D++T S +++ LCK  ++  A ++L S ++ G+   +     +V+G
Sbjct: 241 DNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNG 286



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 125/278 (44%), Gaps = 5/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+NI+++G  +        ++   ++++G  P +++Y  LI  LCK G+
Sbjct: 338 MVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGK 397

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +L+++   G  PNA  Y  ++       K +  L     M + G       Y +
Sbjct: 398 ILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNS 457

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K+G+LKEA +    + + G   D+++YN+LI+ Y   G  +    L + M+K G
Sbjct: 458 LIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLG 517

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            +    T   LI G  K G IK        M ++    +   YN ++    + G +  A 
Sbjct: 518 LKPTINTFHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAF 576

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLL 274
           ++ + M       D+ TY+S++    K  +L     L+
Sbjct: 577 SLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLV 614



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 1/177 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF+ +++G C          +F  + +    P+ V YN +I    + G ++ A 
Sbjct: 518 LKPTINTFHPLISG-CSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAF 576

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+ D G  P+  TY +++    +  K     +++  MK KG   +   Y  +I   
Sbjct: 577 SLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGH 636

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
             +     A  +  +M+ +G   ++   N L     K+G+L+ A  +  EM   G +
Sbjct: 637 CDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMD 693



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 2/147 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +L+P    +N M++   +  +   A  + + +   G  P+  TYN LI G  K G+
Sbjct: 547 MLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGK 606

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L   + ++ ++   G  P A TY+ +++     + +         M   G+       C 
Sbjct: 607 LSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGF-LPNVCICN 665

Query: 121 VIA-AFVKIGRLKEATDYMEQMVTDGV 146
            ++    K GRL+EA     +M+ +G+
Sbjct: 666 ELSTGLRKDGRLQEAQSICSEMIANGM 692


>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 121/246 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P  A++  ++N LCK      A+++   ++  G+    VTYN L+KGLC  G 
Sbjct: 123 MISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGN 182

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  +   L  L   G  PNA TY+++++  ++ R     + +L  +  KG   +   Y  
Sbjct: 183 LNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNV 242

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    K GR++EA    + + + G   ++VSYN L+   C EG+ E A  LL EM  + 
Sbjct: 243 LLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRE 302

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                 T+ ILI  L   G I+ A   ++ M    F     +YN I+ RL K+GK++  +
Sbjct: 303 RSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVV 362

Query: 241 NVFESM 246
           N  + M
Sbjct: 363 NCLDQM 368



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 131/256 (51%), Gaps = 4/256 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  LCK+     A+R+   +   G +P+  +Y  L+  LCK G +  A  +++++ DSG
Sbjct: 103 LLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSG 162

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           +  N +TY T++K    +      L+ L  + +KG   + F Y +++ A  K   + EA 
Sbjct: 163 YPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAM 222

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             +++++  G Q ++VSYN L+   CKEG++E A  L   +  +GF  +  ++ IL+  L
Sbjct: 223 RLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSL 282

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDS 251
           C  G  + A   L  MN      ++  YN ++  L   GKI+ A+ V + M +      +
Sbjct: 283 CYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTA 342

Query: 252 FTYSSMVHNLCKAKRL 267
            +Y+ ++  LCK  ++
Sbjct: 343 TSYNPIIARLCKEGKV 358



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 155/315 (49%), Gaps = 7/315 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N++L GLCK    + A+R+F+ L   GF P +V+YNIL++ LC  GR   A  +
Sbjct: 235 PNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANEL 294

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+     +P+ +TY  ++     + K +  L+++  M    +      Y  +IA   K
Sbjct: 295 LAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCK 354

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKY 186
            G+++   + ++QM+      +  ++N  I + C EGK++ A+ L+  +  KQ      Y
Sbjct: 355 EGKVEAVVNCLDQMIFGRCSPNEGTFNA-IAVLCYEGKVQEAFSLIQSLGNKQNSSIHDY 413

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
              + +  LCK GN   A L L  M K GF  +   Y+ ++  L  +G +  A+ +F+ +
Sbjct: 414 YKGV-VSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLL 472

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           E      D   +++++   CK+ R   + ++    ++ G    ++    +V+G+ H   +
Sbjct: 473 EEDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEK 532

Query: 303 REAKKIQSKIRMAKI 317
             A ++  ++ + ++
Sbjct: 533 ELAAEVLRELHLRQV 547



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 123/241 (51%), Gaps = 4/241 (1%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           K+G  P++V    L+  LCK+ +++ A  +++ +   G  P+A +YT ++    +     
Sbjct: 90  KNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVG 149

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             ++++  M+  GY  +   Y T++      G L ++  ++++++  G+  +  +Y++L+
Sbjct: 150 YAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLL 209

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
               KE  +  A  LLDE+  +G + +  ++ +L+ GLCK G I+ A    + +   GF 
Sbjct: 210 EAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFS 269

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKL 273
            N+ +YN ++  L  +G+ + A  +   M  ++      TY+ ++ +L    ++  A ++
Sbjct: 270 PNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQV 329

Query: 274 L 274
           +
Sbjct: 330 I 330



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 108/219 (49%), Gaps = 4/219 (1%)

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+  A + L+ +  +GH P+ +  T ++    ++ K K  + ++  M   G   D   Y 
Sbjct: 77  RISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYT 136

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++    K G +  A   +E+M   G   + V+YNTL+   C  G L  +   LD + ++
Sbjct: 137 FLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQK 196

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   + +T++ L++   K   +  A   L+ +   G   NL +YN ++  L K+G+I+ A
Sbjct: 197 GLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEA 256

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           I +F+++  K    +  +Y+ ++ +LC   R   A++LL
Sbjct: 257 IRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELL 295



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 10/191 (5%)

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+ +A  ++E +V +G + D+V    L+   CK  K++ A  +++ M   G   D  ++T
Sbjct: 77  RISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYT 136

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            L++ LCK GN+  A   +E M   G+ +N   YN +V  L   G ++ ++   + +   
Sbjct: 137 FLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQK 196

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             V ++FTYSS++    K + +  A +LL   +  G +    +   ++ GL   G     
Sbjct: 197 GLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEG----- 251

Query: 306 KKIQSKIRMAK 316
            +I+  IR+ K
Sbjct: 252 -RIEEAIRLFK 261



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 107/251 (42%), Gaps = 1/251 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+NI++  L  +   + AL++   +    F P   +YN +I  LCK G++     
Sbjct: 304 SPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVN 363

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            L ++     +PN  T+  I   C+   K +    ++ ++  K  +     Y  V++   
Sbjct: 364 CLDQMIFGRCSPNEGTFNAIAVLCYEG-KVQEAFSLIQSLGNKQNSSIHDYYKGVVSCLC 422

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G    A   + +M   G   D  +Y++LI   C EG L  A  +   +E+  +  D  
Sbjct: 423 KKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDID 482

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
               LI G CK+     +    E M + G+  +   Y  +V+ +  + + + A  V   +
Sbjct: 483 NFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVLREL 542

Query: 247 EVKDSFTYSSM 257
            ++   + S++
Sbjct: 543 HLRQVMSQSTV 553



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 4/125 (3%)

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           ++ ++  A+  L+ + K G + D    T L+  LCK+  +K A   +E M   G   +  
Sbjct: 74  RDMRISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAA 133

Query: 222 AYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
           +Y  +V+ L K G + +A+ + E ME      ++ TY+++V  LC    L  + + L   
Sbjct: 134 SYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRL 193

Query: 278 LKSGV 282
           ++ G+
Sbjct: 194 MQKGL 198


>gi|449508786|ref|XP_004163411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17670-like [Cucumis sativus]
          Length = 464

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 141/275 (51%), Gaps = 5/275 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T ++ +  LC     D A+ + + L +    P++ TYN L+K LCK+  
Sbjct: 151 MVTNGFNPDKVTADLAVRSLCSVGLVDEAVELVKELSQKHTPPDIYTYNHLVKQLCKSRA 210

Query: 61  LRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L T    + E+  S G  P+ +TYT ++     +   +  + ++S + ++G+  D F Y 
Sbjct: 211 LSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYN 270

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  +  +GR  EA    ++M   G++ D+V++NTLI    K G+++ A   LD M + 
Sbjct: 271 TIMKGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNTLIFGLSKSGRVKEARNFLDIMAEM 330

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T+T L++G+C+ GN  GA   L+ M   G + N   YN ++  L K   +D  
Sbjct: 331 GHFPDAVTYTSLMNGMCREGNALGALSLLKEMEAKGCNPNSCTYNTLLHGLSKSRLLDRG 390

Query: 240 INVFESMEVKD----SFTYSSMVHNLCKAKRLPSA 270
           I ++  M+  D    + +YS+ V  LC++ R+  A
Sbjct: 391 IELYGLMKSCDMKLETASYSTFVRALCRSGRIAEA 425



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 42/264 (15%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P   T+ I+++ +C +     A+R+   L K GF P+   YN ++KG C  GR  
Sbjct: 225 CG-AKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGA 283

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  + K++ + G  P+ +T+ T++                            FG     
Sbjct: 284 EAIGVYKKMKEVGLEPDVVTFNTLI----------------------------FG----- 310

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K GR+KEA ++++ M   G   D V+Y +L+N  C+EG    A  LL EME +G  
Sbjct: 311 --LSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNALGALSLLKEMEAKGCN 368

Query: 183 CDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            +  T+  L+ GL K+  + +G  L+   M          +Y+  V  L + G+I  A  
Sbjct: 369 PNSCTYNTLLHGLSKSRLLDRGIELY-GLMKSCDMKLETASYSTFVRALCRSGRIAEAYE 427

Query: 242 VF----ESMEVKDSFTYSSMVHNL 261
            F    ES  + D   Y S+   L
Sbjct: 428 AFDYAVESKSLTDVSAYLSLESTL 451



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 44/270 (16%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNAL----RMFRGLQKHGFVPELVTYNILIKGLCK 57
           +    +P  +TF+I+L+    NR  D+ L    ++   +  +GF P+ VT ++ ++ LC 
Sbjct: 115 VQPSFSPDQSTFHILLS-TSGNR-PDSTLASVQQILNFMVTNGFNPDKVTADLAVRSLCS 172

Query: 58  AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
            G +  A  ++KEL      P+  TY  ++K   ++R        LS +    Y F    
Sbjct: 173 VGLVDEAVELVKELSQKHTPPDIYTYNHLVKQLCKSRA-------LSTV----YNF---- 217

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
                               +E   + G + D+V+Y  LI+  C    L  A  L+  + 
Sbjct: 218 -------------------IVEMRSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLY 258

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           K+GF+ D + +  ++ G C  G    A    + M ++G + ++  +N ++  L K G++ 
Sbjct: 259 KEGFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNTLIFGLSKSGRVK 318

Query: 238 HAINVFESM----EVKDSFTYSSMVHNLCK 263
            A N  + M       D+ TY+S+++ +C+
Sbjct: 319 EARNFLDIMAEMGHFPDAVTYTSLMNGMCR 348



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
           +IL+ M   G+  D       + +   +G + EA + ++++       DI +YN L+   
Sbjct: 146 QILNFMVTNGFNPDKVTADLAVRSLCSVGLVDEAVELVKELSQKHTPPDIYTYNHLVKQL 205

Query: 161 CKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           CK   L   Y  + EM    G + D  T+TILID +C + N++ A   +  + K GF  +
Sbjct: 206 CKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPD 265

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESM-EV---KDSFTYSSMVHNLCKAKRLPSASKLL 274
              YN I+      G+   AI V++ M EV    D  T+++++  L K+ R+  A   L
Sbjct: 266 CFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNTLIFGLSKSGRVKEARNFL 324



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 13/220 (5%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SGH P      T+ K        KL    +SA K     F+   + +++ ++  I  L 
Sbjct: 48  SSGH-PEKPKLPTVFKSASLADAKKLYSSFISATKAP---FNLRVHNSLLQSYASIATLN 103

Query: 133 EATDYMEQM--VTDGVQLDIVSYNTLINLYC--KEGKLEAAYLLLDEMEKQGFECDKYTH 188
           ++  ++  M  V      D  +++ L++      +  L +   +L+ M   GF  DK T 
Sbjct: 104 DSISFLRHMSKVQPSFSPDQSTFHILLSTSGNRPDSTLASVQQILNFMVTNGFNPDKVTA 163

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            + +  LC  G +  A   ++ +++     ++  YN +V +L K   +    N    M  
Sbjct: 164 DLAVRSLCSVGLVDEAVELVKELSQKHTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRS 223

Query: 249 -----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                 D  TY+ ++ N+C +  L  A +L+    K G +
Sbjct: 224 SCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFK 263


>gi|449434442|ref|XP_004135005.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17670-like [Cucumis sativus]
          Length = 464

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 141/275 (51%), Gaps = 5/275 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T ++ +  LC     D A+ + + L +    P++ TYN L+K LCK+  
Sbjct: 151 MVTNGFNPDKVTADLAVRSLCSVGLVDEAVELVKELSQKHTPPDIYTYNHLVKQLCKSRA 210

Query: 61  LRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L T    + E+  S G  P+ +TYT ++     +   +  + ++S + ++G+  D F Y 
Sbjct: 211 LSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYN 270

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           T++  +  +GR  EA    ++M   G++ D+V++NTLI    K G+++ A   LD M + 
Sbjct: 271 TIMKGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNTLIFGLSKSGRVKEARNFLDIMAEM 330

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D  T+T L++G+C+ GN  GA   L+ M   G + N   YN ++  L K   +D  
Sbjct: 331 GHFPDAVTYTSLMNGMCREGNALGALSLLKEMEAKGCNPNSCTYNTLLHGLSKSRLLDRG 390

Query: 240 INVFESMEVKD----SFTYSSMVHNLCKAKRLPSA 270
           I ++  M+  D    + +YS+ V  LC++ R+  A
Sbjct: 391 IELYGLMKSCDMKLETASYSTFVRALCRSGRIAEA 425



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 116/264 (43%), Gaps = 42/264 (15%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P   T+ I+++ +C +     A+R+   L K GF P+   YN ++KG C  GR  
Sbjct: 225 CG-AKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGA 283

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  + K++ + G  P+ +T+ T++                            FG     
Sbjct: 284 EAIGVYKKMKEVGLEPDVVTFNTLI----------------------------FG----- 310

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K GR+KEA ++++ M   G   D V+Y +L+N  C+EG    A  LL EME +G  
Sbjct: 311 --LSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNALGALSLLKEMEAKGCN 368

Query: 183 CDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
            +  T+  L+ GL K+  + +G  L+   M          +Y+  V  L + G+I  A  
Sbjct: 369 PNSCTYNTLLHGLSKSRLLDRGIELY-GLMKSCDMKLETASYSTFVRALCRSGRIAEAYE 427

Query: 242 VF----ESMEVKDSFTYSSMVHNL 261
           VF    ES  + D   Y S+   L
Sbjct: 428 VFDYAVESKSLTDVSAYLSLESTL 451



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
           +IL+ M   G+  D       + +   +G + EA + ++++       DI +YN L+   
Sbjct: 146 QILNFMVTNGFNPDKVTADLAVRSLCSVGLVDEAVELVKELSQKHTPPDIYTYNHLVKQL 205

Query: 161 CKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           CK   L   Y  + EM    G + D  T+TILID +C + N++ A   +  + K GF  +
Sbjct: 206 CKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPD 265

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESM-EV---KDSFTYSSMVHNLCKAKRLPSASKLL 274
              YN I+      G+   AI V++ M EV    D  T+++++  L K+ R+  A   L
Sbjct: 266 CFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNTLIFGLSKSGRVKEARNFL 324



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 13/220 (5%)

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SGH P      T+ K        KL    +SA K     F+   + +++ ++  I  L 
Sbjct: 48  SSGH-PEKPKLPTVFKSASLADAKKLYSSFVSATKAP---FNLRVHNSLLQSYASIATLN 103

Query: 133 EATDYMEQM--VTDGVQLDIVSYNTLINLYC--KEGKLEAAYLLLDEMEKQGFECDKYTH 188
           ++  ++  M  V      D  +++ L++      +  L +   +L+ M   GF  DK T 
Sbjct: 104 DSISFLRHMSKVQPSFSPDQSTFHILLSTSGNRPDSTLASVQQILNFMVTNGFNPDKVTA 163

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            + +  LC  G +  A   ++ +++     ++  YN +V +L K   +    N    M  
Sbjct: 164 DLAVRSLCSVGLVDEAVELVKELSQKHTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRS 223

Query: 249 -----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
                 D  TY+ ++ N+C +  L  A +L+    K G +
Sbjct: 224 SCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFK 263


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 5/232 (2%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG----RLRT 63
            P   T+NI++N LCK    ++A  +   +Q      ++VTYN LI GLC+ G    R+  
Sbjct: 1765 PDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVER 1824

Query: 64   ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
            A  + +E+ D GH P ++TYT ++    R +  +   ++L  M   G  FD   Y  +I 
Sbjct: 1825 AFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLIN 1884

Query: 124  AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
             F K G + +A D   +M T G   D+V+YN++++ +CK GK+E A  L  EM+ +G   
Sbjct: 1885 RFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFP 1944

Query: 184  DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
            +  T+T + D   KAG ++ A  +L  M K G    + +Y  ++  + K GK
Sbjct: 1945 NGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAI-SYVALISTICKLGK 1995



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 7/278 (2%)

Query: 13   FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            +NI+L  LCK+     AL +   +      P++ TYNILI  LCK GRL  A+ +++ + 
Sbjct: 1735 YNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQ 1794

Query: 73   DSGHAPNAITYTTIMK--CCFRNRKYKL--GLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
                  + +TY T++   C   N ++++     +   M  KG+T     Y  VI A +++
Sbjct: 1795 ARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRV 1854

Query: 129  GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
               ++A   ++ M  +G   D+V+YN LIN + K G ++ A  L  EM  +G   D  T+
Sbjct: 1855 KMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTY 1914

Query: 189  TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
              ++DG CKAG ++ A      M   G   N   Y  I D   K G++  A      M  
Sbjct: 1915 NSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRK 1974

Query: 248  --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              + D+ +Y +++  +CK  +     +LL   L+ G +
Sbjct: 1975 EGLVDAISYVALISTICKLGKGKLGFQLLREMLEKGFK 2012



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 142/325 (43%), Gaps = 50/325 (15%)

Query: 3    CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRL 61
            CG L+      +I+++ L   R  +  ++ F     +HG+      +N L++ L    + 
Sbjct: 1623 CGKLST-----DIVVDVLNHARDVEPTIQFFEWCHGRHGYTHTAFAFNRLLEFLVNKRQY 1677

Query: 62   RTARWIL-KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L  E   S    NA TY+TI++    + + +  L +L  MK+     +   Y  
Sbjct: 1678 KRAHQMLIAESKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNI 1737

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++    K G+ KEA D +  M T     DI +YN LIN  CK G+LE A  L++ M+ + 
Sbjct: 1738 ILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARE 1797

Query: 181  FECDKYTHTILIDGLCKAGNIK-------------------------------------- 202
               D  T+  LI GLC+ GN +                                      
Sbjct: 1798 CPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMD 1857

Query: 203  -GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
              A+  L+ M++ G   +L  YN +++R  K G +D A+++F  M     + D  TY+S+
Sbjct: 1858 EQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSI 1917

Query: 258  VHNLCKAKRLPSASKLLLSCLKSGV 282
            V   CKA ++  A+KL       G+
Sbjct: 1918 VDGFCKAGKVEEANKLFAEMKARGI 1942



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 115/207 (55%), Gaps = 1/207 (0%)

Query: 7    TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            TP + T+ ++++ L + +  + A ++   + ++G   +LVTYN+LI    KAG +  A  
Sbjct: 1838 TPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMD 1897

Query: 67   ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            +  E+   G  P+ +TY +I+    +  K +   ++ + MK +G   +G  Y ++  A +
Sbjct: 1898 LFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACL 1957

Query: 127  KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            K GR+++A  Y+ +M  +G+ +D +SY  LI+  CK GK +  + LL EM ++GF+ +  
Sbjct: 1958 KAGRMQDAHAYLVEMRKEGL-VDAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLV 2016

Query: 187  THTILIDGLCKAGNIKGARLHLEYMNK 213
            T  ++ + L K  N   A++ ++ + +
Sbjct: 2017 TFNVVFEALSKESNTDDAKIMIQELRQ 2043


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 145/279 (51%), Gaps = 6/279 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+ ++++GLCK    + A  +F  + + G  P+++ Y+ LI GL KAGR
Sbjct: 132 MVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGR 191

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR ++  +   G  P A+ YT+I+    +  + +  ++ +  M+R+        Y  
Sbjct: 192 VDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSF 251

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  ++ +G+++EA   ME+M       D +SY   I      G+ E A  + + M ++G
Sbjct: 252 IVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG 311

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + D +T+ I+ID  CK G++  A   L  M+K     N   Y  I+D   K  +++ A+
Sbjct: 312 CKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEAL 371

Query: 241 NVFESMEVKD-----SFTYSSMVHNLCKAKRLPSASKLL 274
            +++ + +KD     + TY+++++ LCK K++  A +LL
Sbjct: 372 ELYQRI-LKDGILPSTVTYNTVINALCKLKKMDEALELL 409



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 142/293 (48%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+  +++GL K    D  L  +  +      P L+TY +L+ GLCKA ++  A  +
Sbjct: 104 PDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDV 163

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+   GH P+ I Y++++    +  +     +++  M  +G       Y +++A   K
Sbjct: 164 FEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCK 223

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR++EA   +++M    ++  + +Y+ ++  Y   GK+E A+ +++EM  +    D  +
Sbjct: 224 CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTIS 283

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T+ I+ L   G  + A    E M + G   ++  Y  I+D   K+G +  A +V   M+
Sbjct: 284 YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMD 343

Query: 248 ---VK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
              VK + + Y+ ++    K+ RL  A +L    LK G+         V++ L
Sbjct: 344 KAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINAL 396



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 134/281 (47%), Gaps = 6/281 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++GL K    D A ++   +   G  P  V Y  ++ GLCK GR++ A   
Sbjct: 174 PDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKT 233

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++E+      P   TY+ I+       K +    ++  M  +    D   Y   I A   
Sbjct: 234 IQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYS 293

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IGR +EA    E MV  G + D+ +Y  +I+ +CKEG + AA  +L  M+K   + ++Y 
Sbjct: 294 IGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYI 353

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +T+++DG  K+  ++ A    + + K G   +   YN +++ L K  K+D A+ +   M 
Sbjct: 354 YTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQ 413

Query: 247 ----EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
               E++ S  TYS ++H L K      A  LL   + +GV
Sbjct: 414 RRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGV 454



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 145/322 (45%), Gaps = 19/322 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNAL-----------RMFRGLQKHGFVPELVTYNILIKG 54
           +T   AT  ++L+ LC  R  D A+           R+F  ++     P+ VTY  ++ G
Sbjct: 60  ITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIE----APDSVTYTAIVDG 115

Query: 55  LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           L KAG         +++  S   P  +TYT ++    +  K +   ++   M RKG+  D
Sbjct: 116 LFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPD 175

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
              Y ++I    K GR+ EA   ++ M+  G     V+Y +++   CK G+++ A   + 
Sbjct: 176 IIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQ 235

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           EM ++       T++ ++ G    G ++ A   +E M       +  +Y   ++ L   G
Sbjct: 236 EMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIG 295

Query: 235 KIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
           + + A  VFE+M  K    D  TY  ++ N CK   + +A+ +L    K+ V+  +    
Sbjct: 296 RREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYT 355

Query: 291 AVVDGLRHSGCRREAKKIQSKI 312
            ++DG   S    EA ++  +I
Sbjct: 356 MIMDGFVKSSRLEEALELYQRI 377



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 128/276 (46%), Gaps = 7/276 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T++ ++ G       + A  +   +      P+ ++Y + I+ L   GR   A  + + +
Sbjct: 248 TYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETM 307

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G  P+  TY  I+    +         +L  M +     + + Y  ++  FVK  RL
Sbjct: 308 VEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRL 367

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME--KQGFECDKYTHT 189
           +EA +  ++++ DG+    V+YNT+IN  CK  K++ A  LL EM+  K+  E    T++
Sbjct: 368 EEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYS 427

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
           ++I GL K G  + A   L  M   G   +   Y  ++  L   GK+  A+ + E M   
Sbjct: 428 MIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKA 487

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
               D  TY ++V  LC++  + +A  LL   +++G
Sbjct: 488 GIFPDDHTYGTLVQILCRSD-VDAAWDLLQEMMRNG 522



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 125/314 (39%), Gaps = 49/314 (15%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +L  L +     +AL  F   Q     P + ++NIL++G            +L+E+  
Sbjct: 1   NSLLLALVRGGQLSDALGFF---QSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKA 57

Query: 74  SG------------------------------------------HAPNAITYTTIMKCCF 91
            G                                           AP+++TYT I+   F
Sbjct: 58  RGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLF 117

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           +   Y  GLE    M           Y  ++    K  +++ A D  E+M+  G + DI+
Sbjct: 118 KAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDII 177

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +Y++LI+   K G+++ A  L+D M  +G       +T ++ GLCK G I+ A   ++ M
Sbjct: 178 AYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEM 237

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
            +      ++ Y+ IV      GK++ A  V E M       D+ +Y+  +  L    R 
Sbjct: 238 RRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRR 297

Query: 268 PSASKLLLSCLKSG 281
             A K+  + ++ G
Sbjct: 298 EEAEKVFETMVEKG 311



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 20/203 (9%)

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +++ A V+ G+L +A  + +  +++    ++ S+N L+  +      E    LL EM+ +
Sbjct: 2   SLLLALVRGGQLSDALGFFQSSISEP---NVSSFNILLRGFAARDDFEVVNALLREMKAR 58

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-----NLEA-----YNCIVDR 229
           G   +  TH +++  LC   ++  A   + Y N    ++      +EA     Y  IVD 
Sbjct: 59  GITSNGATHGVILSALCARRDLDKA---VSYFNSRTEEACRLFEAIEAPDSVTYTAIVDG 115

Query: 230 LGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
           L K G  D  +  +E M          TY+ +V  LCKA ++  A  +    ++ G +  
Sbjct: 116 LFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPD 175

Query: 286 KSAQKAVVDGLRHSGCRREAKKI 308
             A  +++DGL  +G   EA+K+
Sbjct: 176 IIAYSSLIDGLSKAGRVDEARKL 198



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   T++++++GL K    + A  +   +  +G +P+  TY  LI+ L  AG++  A
Sbjct: 418 ELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRA 477

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             +L+E+  +G  P+  TY T+++   R+       ++L  M R G+T + F +  V
Sbjct: 478 MELLEEMLKAGIFPDDHTYGTLVQILCRS-DVDAAWDLLQEMMRNGHTPNEFTFKAV 533



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  ++  L        A+ +   + K G  P+  TY  L++ LC++  
Sbjct: 449 MIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSD- 507

Query: 61  LRTARW-ILKELGDSGHAPNAITYTTIMK 88
              A W +L+E+  +GH PN  T+  + K
Sbjct: 508 -VDAAWDLLQEMMRNGHTPNEFTFKAVEK 535


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 150/319 (47%), Gaps = 5/319 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           LTP   T+N ++ GLCKN     A +    L   G  P+  TYN LI G CK G L+ A 
Sbjct: 282 LTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAE 341

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL+     G  P+  TY +++    +N +    L + +A   KG       Y  +I   
Sbjct: 342 KILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGL 401

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G + +A   M +M  +G   DI +YN +IN  CK G +  A  L+++   +G+  D 
Sbjct: 402 CQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDV 461

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T   LIDG CK   ++     L  M   G   ++  YN +++ L K  K +  +  FE+
Sbjct: 462 FTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFET 521

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M     V +  TY+ +  +LCKA ++  A  L+   L  G+     +   ++ G  ++G 
Sbjct: 522 MVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGD 581

Query: 302 RREAKKIQSKI-RMAKISH 319
            + A ++  ++    K+SH
Sbjct: 582 LKGAYQLFRRMGEQYKVSH 600



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 141/293 (48%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  +TFN +L+ LCK      + R+   + K G    L T+NI I+GLC+ G L  A  +
Sbjct: 214 PDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSM 273

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G  P+ +TY T++    +N       + L  +   G   DGF Y T+I  + K
Sbjct: 274 LDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCK 333

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G L+ A   ++  +  G   D  +Y +LIN  C+  +++ A  L +    +G +     
Sbjct: 334 MGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVIL 393

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           + +LI GLC+ G I  A   +  M++ G  S++  YN +++ L K G +  A N+     
Sbjct: 394 YNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAI 453

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               V D FT+++++   CK  ++ +  ++L      GV        +V++GL
Sbjct: 454 AKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGL 506



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++N ++N L ++ Y   A ++F  ++  G VP++ T+ I IK  C+  R  +A  +
Sbjct: 109 PSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRL 168

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G   NA+ Y T++   +         E+ + M R G   D   +  ++    K
Sbjct: 169 LNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCK 228

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G ++E+   + +++  G+  ++ ++N  I   C++G L  A  +LD + ++G   D  T
Sbjct: 229 KGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVT 288

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +  LI GLCK  N+  A  +L  +   G + +   YN ++D   K G + +A  + +   
Sbjct: 289 YNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAI 348

Query: 247 ---EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               V D FTY S+++ LC+   +  A  L  + L  G++        ++ GL   G   
Sbjct: 349 CKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLIL 408

Query: 304 EAKKIQSKI 312
           +A ++ +++
Sbjct: 409 QALQMMNEM 417



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 134/278 (48%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           ++ G L P   T+N +++G CK     NA ++ +G    GFVP+  TY  LI GLC+   
Sbjct: 312 LVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDE 371

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +       G  P  I Y  ++K   +       L++++ M   G + D + Y  
Sbjct: 372 IDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNL 431

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI    K+G + +A + M   +  G   D+ ++NTLI+ YCK+ K+E    +L++M   G
Sbjct: 432 VINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHG 491

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  +++GL KA   +      E M + G   N   YN + + L K GK++ A+
Sbjct: 492 VTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEAL 551

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           ++ + +  K    D+ ++++++        L  A +L 
Sbjct: 552 DLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLF 589



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 7/305 (2%)

Query: 2   ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 61
           IC    P   T+  ++NGLC+N   D AL +F      G  P ++ YN+LIKGLC+ G +
Sbjct: 348 ICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLI 407

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  ++ E+ ++G + +  TY  ++    +         +++    KGY  D F + T+
Sbjct: 408 LQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTL 467

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  + K  +++     + +M + GV  D+++YN+++N   K  K E      + M ++G 
Sbjct: 468 IDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGC 527

Query: 182 ECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             +K T+ IL + LCKAG +  A  L  E +NK G   +  ++  I+     +G +  A 
Sbjct: 528 VPNKITYNILTESLCKAGKVNEALDLVDEILNK-GITPDTVSFATIISGFANNGDLKGAY 586

Query: 241 NVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +F  M  +      + TY+ M++   +   L    KL L     G        + ++DG
Sbjct: 587 QLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDG 646

Query: 296 LRHSG 300
              +G
Sbjct: 647 FCITG 651



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 153/331 (46%), Gaps = 41/331 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N+++NGLCK     +A  +       G+VP++ T+N LI G CK  ++ T   IL ++
Sbjct: 428 TYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKM 487

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ ITY +++    +  K +  +E    M  KG   +   Y  +  +  K G++
Sbjct: 488 WSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKV 547

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------------ 179
            EA D +++++  G+  D VS+ T+I+ +   G L+ AY L   M +Q            
Sbjct: 548 NEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNI 607

Query: 180 ------------------------GFECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKI 214
                                   G   D YT+ ++IDG C  GN   G +  LE + K 
Sbjct: 608 MINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEK- 666

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA-KRLPSASKL 273
           GF  +L  +  +++ L    ++  A+++   M V +      +V+++ +A K++ +A K+
Sbjct: 667 GFIPSLTTFGRVINCLCVQHRVHEAVDIIHFM-VHNGIV-PEVVNSISEADKKVVAAPKI 724

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           ++  L     I   A + + DG+R    +++
Sbjct: 725 VVEDLLKRSCITYYAYELLYDGIRDKKTQKQ 755



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 136/272 (50%), Gaps = 4/272 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+ +F  +  +   P +++YN ++  L ++G  + A  +   + + G  P+  T+T  +K
Sbjct: 95  AVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIK 154

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R ++    L +L+ M  +G   +   YCTV+A F +     EA +    M+  G+  
Sbjct: 155 SFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFP 214

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D+ ++N L++  CK+G+++ +  LL+++ K+G   + +T  I I GLC+ G + GA   L
Sbjct: 215 DVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSML 274

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKA 264
           + + + G   ++  YN ++  L K+  +  A      +       D FTY++++   CK 
Sbjct: 275 DSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKM 334

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             L +A K+L   +  G    +    ++++GL
Sbjct: 335 GMLQNAEKILQGAICKGFVPDEFTYCSLINGL 366



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 119/261 (45%), Gaps = 4/261 (1%)

Query: 52  IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
           +K   + G+++ A  + + +      P+ ++Y  IM     +  +K   ++   MK  G 
Sbjct: 83  MKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGI 142

Query: 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171
             D + +   I +F +  R   A   +  MV+ G QL+ V+Y T++  + +E     AY 
Sbjct: 143 VPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYE 202

Query: 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231
           L ++M + G   D  T   L+  LCK G ++ +   L  + K G  SNL  +N  +  L 
Sbjct: 203 LFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLC 262

Query: 232 KDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 287
           + G +  A+++ +S+       D  TY++++  LCK   +  A K L   +  G+     
Sbjct: 263 RKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGF 322

Query: 288 AQKAVVDGLRHSGCRREAKKI 308
               ++DG    G  + A+KI
Sbjct: 323 TYNTLIDGYCKMGMLQNAEKI 343



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 4/169 (2%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y   + ++ + G+++EA D  E+M     +  ++SYN ++N+  + G  + A+ +   M+
Sbjct: 79  YIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMK 138

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
             G   D YT TI I   C+      A   L  M   G   N  AY  +V    ++    
Sbjct: 139 NVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRV 198

Query: 238 HAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            A  +F  M       D  T++ ++H LCK   +  + +LL   LK G+
Sbjct: 199 EAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGM 247



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           TAT+NIM+N   +        ++F  +   G  P+  TY ++I G C  G   +    L 
Sbjct: 602 TATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLL 661

Query: 70  ELGDSGHAPNAITYTTIMKC-CFRNRKYKLGLEILSAMKRKG 110
           E+ + G  P+  T+  ++ C C ++R ++  ++I+  M   G
Sbjct: 662 EMIEKGFIPSLTTFGRVINCLCVQHRVHE-AVDIIHFMVHNG 702



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M  G   P T T+ +M++G C    TD+  +    + + GF+P L T+  +I  LC   R
Sbjct: 628 MGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHR 687

Query: 61  LRTARWILKELGDSGHAPNAI 81
           +  A  I+  +  +G  P  +
Sbjct: 688 VHEAVDIIHFMVHNGIVPEVV 708


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 178/387 (45%), Gaps = 74/387 (19%)

Query: 6   LTPCTATFNIMLNGLCKN-----------------------RYT------------DNAL 30
            +P   T+NI++  LC                          YT            D+A+
Sbjct: 177 FSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAM 236

Query: 31  RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA-------------------------- 64
           R+   +   G  P++ TYN++++G+CK G +  A                          
Sbjct: 237 RLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNE 296

Query: 65  -RW-----ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
            RW     ++ ++   G  PN +TY+ ++    R+ K    +++L  MK KG   D + Y
Sbjct: 297 GRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCY 356

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
             +I+AF K G++  A  +++ M++ G   DIV+YNT++   CK+G+ + A  +  ++E+
Sbjct: 357 DPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEE 416

Query: 179 QGFECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
            G   +  ++  +   L  +G+ I+   + LE ++  G D +   YN ++  L +DG +D
Sbjct: 417 VGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSN-GVDPDRITYNSLISSLCRDGMVD 475

Query: 238 HAINVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293
            AI +   ME  +      +Y+ ++  LCKA R+  A ++L   + +G +  ++    +V
Sbjct: 476 EAIGLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLV 535

Query: 294 DGLRHSGCRREAKKI-QSKIRMAKISH 319
           +G+ ++G R  A ++ +S + M  IS 
Sbjct: 536 EGVGYAGWRSYAVELAKSLVSMNAISQ 562



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 152/334 (45%), Gaps = 36/334 (10%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P +  +N +++G C++   D A R+   ++  GF P++VTYNILI  LC  G+L  A  +
Sbjct: 144 PDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKV 203

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + +L +    P  ITYT +++    +      + +L  M  +G   D + Y  ++    K
Sbjct: 204 MDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCK 263

Query: 128 IGRLKEATDY--------------------------------MEQMVTDGVQLDIVSYNT 155
            G +  A ++                                M  M+  G + +IV+Y+ 
Sbjct: 264 RGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSV 323

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+  C++GK   A  +L  M+++G   D Y +  LI   CK G +  A   ++ M   G
Sbjct: 324 LISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAG 383

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
           +  ++  YN I+  L K G+ D A+N+F+ +E      ++ +Y++M   L  +     A 
Sbjct: 384 WLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRAL 443

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            ++L  L +GV   +    +++  L   G   EA
Sbjct: 444 TMILEMLSNGVDPDRITYNSLISSLCRDGMVDEA 477



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 133/302 (44%), Gaps = 39/302 (12%)

Query: 17  LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76
           LN LCK      AL     + K G+ P+++    LIKGL  + R   A  +++ L   G 
Sbjct: 84  LNRLCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYGD 143

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
            P++  Y  ++    R+ ++     ++  MK +G++ D   Y  +I +    G+L  A  
Sbjct: 144 -PDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALK 202

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196
            M+Q++ D     +++Y  LI      G ++ A  LLDEM  +G + D YT+ +++ G+C
Sbjct: 203 VMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMC 262

Query: 197 KAGNIK---------------------------------GARLHLEYMNKIGFDSNLEAY 223
           K G +                                  G RL  + + K G + N+  Y
Sbjct: 263 KRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVK-GCEPNIVTY 321

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           + ++  L +DGK   A++V   M+ K    D++ Y  ++   CK  ++  A   +   + 
Sbjct: 322 SVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMIS 381

Query: 280 SG 281
           +G
Sbjct: 382 AG 383



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 11/202 (5%)

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           +++ Y F    +   +    K G+  EA  ++EQMV  G + D++    LI       + 
Sbjct: 69  QQQHYDFRDTHHMKALNRLCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRT 128

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
           E A  +++ +E+ G + D + +  +I G C++     A   +  M   GF  ++  YN +
Sbjct: 129 EKAVRVMEILEQYG-DPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNIL 187

Query: 227 VDRLGKDGKIDHAINVFESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           +  L   GK+D A+ V + + ++D+      TY+ ++        +  A +LL   +  G
Sbjct: 188 IGSLCARGKLDLALKVMDQL-LEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRG 246

Query: 282 VRILKSAQKAVVDGLRHSGCRR 303
           ++        +V G+    C+R
Sbjct: 247 LQPDMYTYNVIVRGM----CKR 264


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 142/301 (47%), Gaps = 4/301 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+ G L P   T+N +++G C     D A      +   G +  LVTYN+ I  L   GR
Sbjct: 312 MLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGR 371

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  ++KE+ + G  P+A+T+  ++    R    K    +L  M  KG       Y +
Sbjct: 372 MGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTS 431

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K  R+KEA     ++  +G+  DI+ +N LI+ +C  G ++ A+ LL EM+   
Sbjct: 432 LIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMK 491

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D+ T+  L+ G C+ G ++ AR  L+ M + G   +  +YN ++    K G +  A 
Sbjct: 492 VLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAF 551

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            V + M          TY++++  LCK +    A +LL   +  G+    S   ++++ +
Sbjct: 552 RVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611

Query: 297 R 297
            
Sbjct: 612 E 612



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +++G C       A  +F+ ++  G  P+  TYN  I GLCK GRL  A  +
Sbjct: 249 PNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGL 308

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++ + G  PNA+TY  ++                  M  KG       Y   I A   
Sbjct: 309 ICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFM 368

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ +A + +++M   G+  D V++N LIN YC+ G  + A+ LLDEM  +G +    T
Sbjct: 369 EGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVT 428

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T LI  L K   +K A      + + G   ++  +N ++D    +G ID A  + + M+
Sbjct: 429 YTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMD 488

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
               + D  TY++++   C+  ++  A +LL    + G++    +   ++ G    G  +
Sbjct: 489 NMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMK 548

Query: 304 EAKKIQSKI 312
           +A +++ ++
Sbjct: 549 DAFRVRDEM 557



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 105/203 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  ++  L K      A  +F  +Q+ G +P+++ +N LI G C  G 
Sbjct: 417 MVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGN 476

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +LKE+ +    P+ ITY T+M+   R  K +   ++L  MKR+G   D   Y T
Sbjct: 477 IDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNT 536

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ + K G +K+A    ++M+T G    I++YN LI   CK  + E A  LL EM  +G
Sbjct: 537 LISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKG 596

Query: 181 FECDKYTHTILIDGLCKAGNIKG 203
              D  T+  +I+ +    +++G
Sbjct: 597 ITPDDSTYLSIIEAMETVDDLEG 619



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 142/308 (46%), Gaps = 4/308 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  F++++   C+ +  + AL  F  +++ GFVP + T N ++    K  R + A  +  
Sbjct: 146 TLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYA 205

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+       +  T+  ++    +  K K   E +  M+  G   +   Y T+I      G
Sbjct: 206 EMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRG 265

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           + + A    + M   G++ D  +YN+ I+  CKEG+LE A  L+ +M + G   +  T+ 
Sbjct: 266 KFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYN 325

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            LIDG C  G++  A  + + M   G  ++L  YN  +  L  +G++  A N+ + M  K
Sbjct: 326 ALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREK 385

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
               D+ T++ +++  C+      A  LL   +  G++       +++  L      +EA
Sbjct: 386 GMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEA 445

Query: 306 KKIQSKIR 313
             + SKI+
Sbjct: 446 DALFSKIQ 453



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 65/129 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ G C+    + A ++   +++ G  P+ ++YN LI G  K G ++ A  +
Sbjct: 494 PDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRV 553

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+  +G  P  +TY  +++   +N++ +   E+L  M  KG T D   Y ++I A   
Sbjct: 554 RDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMET 613

Query: 128 IGRLKEATD 136
           +  L+   D
Sbjct: 614 VDDLEGNDD 622


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 4/266 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N ++ G+CK+++ ++A  ++  +   G  P +VTY+ LI G    G+L+ A  +  ++ 
Sbjct: 80  YNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII 139

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                P+  T+  ++    ++RK K G  + + M ++G   D   Y +++  +  +  + 
Sbjct: 140 LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVN 199

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A      M   GV  DI SYN LIN +CK  K++ A  L +EM  +    +  T+  LI
Sbjct: 200 TAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLI 259

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV---FESMEVK 249
           DGL K+G I  A   ++ M+  G   N+  YN I+D L K  ++D AI +   F+   ++
Sbjct: 260 DGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQ 319

Query: 250 DS-FTYSSMVHNLCKAKRLPSASKLL 274
            S +TY+ ++  LCK  RL  A  + 
Sbjct: 320 PSMYTYTILIDGLCKGGRLKDARNIF 345



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 142/293 (48%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       A      L   GF  + V+Y  LI GLCK G  R A  +
Sbjct: 5   PNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDL 64

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +       NA+ Y T++    +++      ++ S M  KG + +   Y  +I+ F  
Sbjct: 65  LQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFV 124

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LK+A D   +++ + ++ D  ++N L++ +CK+ K++    +   M KQG   D  T
Sbjct: 125 VGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVT 184

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  L+DG      +  A+     M + G + ++ +YN +++   K  K+D A+N+F  M 
Sbjct: 185 YNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMH 244

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
               + +  TY+S++  L K+ R+  A +L+      GV        +++D L
Sbjct: 245 CKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDAL 297



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 109/205 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  ++ P   TFNI+++G CK+R       +F  + K G +P++VTYN L+ G      
Sbjct: 138 IILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKE 197

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + TA+ I   +   G  P+  +Y  ++    + +K    + + + M  K    +   Y +
Sbjct: 198 VNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNS 257

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+  A   ++QM   GV  +I++YN++I+   K  +++ A  L+ + + QG
Sbjct: 258 LIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQG 317

Query: 181 FECDKYTHTILIDGLCKAGNIKGAR 205
            +   YT+TILIDGLCK G +K AR
Sbjct: 318 IQPSMYTYTILIDGLCKGGRLKDAR 342



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 117/246 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ +++G        +A+ +F  +      P+  T+NIL+ G CK  +
Sbjct: 103 MVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRK 162

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++  + +   +   G  P+ +TY +++      ++      I + M + G   D   Y  
Sbjct: 163 MKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNI 222

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F KI ++ +A +   +M    +  ++V+YN+LI+   K G++  A  L+D+M  +G
Sbjct: 223 LINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRG 282

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  +ID L K   +  A   +      G   ++  Y  ++D L K G++  A 
Sbjct: 283 VPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDAR 342

Query: 241 NVFESM 246
           N+FE +
Sbjct: 343 NIFEDL 348


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 5/284 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF+ ++    K R T+    +   ++  G  P + TY I I+ L +AGR
Sbjct: 220 MVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGR 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I+K + D G  P+ +TYT ++       K    +E+   MK   +  D   Y T
Sbjct: 280 IDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYIT 339

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   G L    ++  +M  DG   D++++  L+N  CK G ++ A+ LLD M KQG
Sbjct: 340 MLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQG 399

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T+  LI GL +   +  A      M  +G       Y   +D  GK G+ D A+
Sbjct: 400 VLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKAL 459

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
             FE M+++    +    ++ +++L +  RL  A K++ + LKS
Sbjct: 460 ETFEKMKIRGIAPNIVACNASLYSLAEMGRLREA-KVIFNRLKS 502



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 121/248 (48%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MIC    P T T NI++  L K+   D AL +F  L    F P   TY  L+ GL K+GR
Sbjct: 851  MICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGR 910

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            L  A+ + +E+ D G  PN   Y  ++    +        E+   M R+G   D   Y +
Sbjct: 911  LEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTS 970

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            ++    + GR+ +A  Y E++   G+ LD ++YN +I+   +  ++E A  L DEM+ +G
Sbjct: 971  LVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRG 1030

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               D +T+  LI  L  AG ++ A    E +  IG + N+  YN ++      G  D A 
Sbjct: 1031 INPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAY 1090

Query: 241  NVFESMEV 248
             V++ M V
Sbjct: 1091 AVYKRMMV 1098



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 148/309 (47%), Gaps = 4/309 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P   ++N ++ G       + A  +F  ++  G  P++ TYN+L+    K+G++     +
Sbjct: 788  PTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFEL 847

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             +++  S   PN IT+  I+    ++      L++   +    ++     Y  ++   +K
Sbjct: 848  YEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLK 907

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             GRL+EA +  E+MV  G + +   YN LIN + K G +  A  L   M ++G   D  +
Sbjct: 908  SGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKS 967

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +T L+  LC+AG +  A  + E + + G   +  AYN ++D LG+  +I+ A+ +++ M+
Sbjct: 968  YTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQ 1027

Query: 248  VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
             +    D FTY+S++ NL  A  +  A KL       G+        A++ G   SG   
Sbjct: 1028 SRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSD 1087

Query: 304  EAKKIQSKI 312
             A  +  ++
Sbjct: 1088 SAYAVYKRM 1096



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 140/303 (46%), Gaps = 9/303 (2%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           ++ +GLC+      AL M+R +   G  P L T++ L+    K     T + +L+E+   
Sbjct: 204 LLQSGLCRE-----ALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESL 258

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  PN  TYT  ++   R  +      I+  M+  G   D   Y  +I A    G+L +A
Sbjct: 259 GLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDA 318

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
            +   +M     + D V+Y T+++ +   G L        EME  G+  D  T TIL++ 
Sbjct: 319 MELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNA 378

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKD 250
           LCKAGNI  A   L+ M K G   NL  YN ++  L +  ++D A+++F +ME    V  
Sbjct: 379 LCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPT 438

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           ++TY   +    K+ R   A +        G+     A  A +  L   G  REAK I +
Sbjct: 439 AYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFN 498

Query: 311 KIR 313
           +++
Sbjct: 499 RLK 501



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 39/306 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF I++N LCK    D A  +   ++K G +P L TYN LI GL +  RL  A  +
Sbjct: 367 PDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDL 426

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE-------------------------- 101
              +   G  P A TY   +    ++ +    LE                          
Sbjct: 427 FNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAE 486

Query: 102 ---------ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
                    I + +K  G   D   Y  ++  + K G++ EA + +  M  +  + DI+ 
Sbjct: 487 MGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIV 546

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
            N+LIN   K G+++ A+ +   ++         T+  LI GL K G ++ A      M 
Sbjct: 547 INSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMT 606

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLP 268
             G   N   +N I+D L K+ ++D A+ +   M     + D  T+++++H L   KR+ 
Sbjct: 607 GNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVS 666

Query: 269 SASKLL 274
            A  L 
Sbjct: 667 DAIWLF 672



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 7/276 (2%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P   T+ ++++ LC     D+A+ +F  ++     P+ VTY  ++      G L 
Sbjct: 295 CG---PDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLG 351

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
             +    E+   G+AP+ IT+T ++    +         +L  M+++G   +   Y T+I
Sbjct: 352 RVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLI 411

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +  +++ RL +A D    M T GV     +Y   I+ Y K G+ + A    ++M+ +G  
Sbjct: 412 SGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIA 471

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            +       +  L + G ++ A++    +   G   +   YN ++    K G++D AI +
Sbjct: 472 PNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIEL 531

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
              M       D    +S+++ L KA R+  A K+ 
Sbjct: 532 LSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMF 567



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 39/278 (14%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           ++  G+ P+++T+ IL+  LCKAG +  A  +L  +   G  PN  TY T++    R  +
Sbjct: 360 MEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNR 419

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIA-------------------------------- 123
               L++ + M+  G     + Y   I                                 
Sbjct: 420 LDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNA 479

Query: 124 ---AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
              +  ++GRL+EA     ++ ++G+  D V+YN ++  Y K G+++ A  LL +M +  
Sbjct: 480 SLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQ 539

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            E D      LI+ L KAG +  A      +  +     +  YN ++  LGK+G++  A+
Sbjct: 540 CEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAM 599

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            +F SM       ++ T+++++  LCK   +  A K+L
Sbjct: 600 ELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKML 637



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 11/271 (4%)

Query: 51   LIKGLCKAGRLRTARWIL----KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
            +IK LCK  +   A+ +     KELG     P   +Y  +++        ++   + + M
Sbjct: 760  IIKVLCKHKQALVAQSVFIRFTKELGVK---PTLESYNFLIEGFLGVHNDEMAWNLFTEM 816

Query: 107  KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
            K  G   D F Y  ++ A  K G++ E  +  EQM+    + + +++N +I    K   L
Sbjct: 817  KNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSL 876

Query: 167  EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
            + A  L  ++    F     T+  L+DGL K+G ++ A+   E M   G   N   YN +
Sbjct: 877  DKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNIL 936

Query: 227  VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            ++  GK G ++ A  +F+ M  +    D  +Y+S+V  LC+A R+  A        ++G+
Sbjct: 937  INGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGL 996

Query: 283  RILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             +   A   ++DGL  S    EA  +  +++
Sbjct: 997  YLDSIAYNLMIDGLGRSHRIEEALTLYDEMQ 1027



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 103/211 (48%), Gaps = 2/211 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P + T+N+M+    K    D A+ +   + ++   P+++  N LI  L KAGR+  A 
Sbjct: 505 LAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAW 564

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   L D   AP  +TY T++    +  + +  +E+ ++M   G   +   + T++   
Sbjct: 565 KMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCL 624

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   +  A   + +M T     D++++NT+I+    E ++  A  L  +M+K     D 
Sbjct: 625 CKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM-LTPDC 683

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIG 215
            T   L+ G+ K G ++ A ++  ++++++G
Sbjct: 684 VTLCTLLPGVVKNGLMEDAFKIAEDFVHRLG 714



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            + P   T+N ++  L      + A +++  LQ  G  P + TYN LI+G   +G   +A 
Sbjct: 1031 INPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAY 1090

Query: 66   WILKELGDSGHAPNAITYTTI 86
             + K +   G +PN  T+  +
Sbjct: 1091 AVYKRMMVGGCSPNTGTFAQL 1111


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 148/286 (51%), Gaps = 5/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++ G C     D A+ +   +   G  P+ V+Y  ++  LC+  R
Sbjct: 342 MVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKR 401

Query: 61  LRTARWILKELG-DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L   R ++K++  DS   P+ +TY ++++   ++      LEIL   ++  +  D   Y 
Sbjct: 402 LNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYS 461

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++ A+ K G++++A + + +M + G   D+V+Y ++++ +C+ GKL+ A  ++ +M K 
Sbjct: 462 AIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKH 521

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             + +  T+T  ++GLC+ G    AR  +    +  +  N   Y+ +V  L ++GK++ A
Sbjct: 522 HCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEA 581

Query: 240 INVFESMEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            +V   M  K  F      + +VH+LC+  +   A++LL  C+  G
Sbjct: 582 CDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKG 627



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 5/302 (1%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           C   F  ++    +     +A+++   +QK G  P L   N  I  L     L+ A    
Sbjct: 280 CPEAFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFA 339

Query: 69  KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           + +   G APN +TY  ++K      +    +E++  M  KG + D   Y TV+    + 
Sbjct: 340 ERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRD 399

Query: 129 GRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            RL E  + +++M TD   L D V+YN+LI +  K G  + A  +L E EK  F+ DK  
Sbjct: 400 KRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVE 459

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ ++   CK G I+ A+  +  M   G D ++  Y  ++D   + GK+D A  + + M 
Sbjct: 460 YSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMY 519

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 ++ TY++ ++ LC+  +   A K++    +            VV GLR  G   
Sbjct: 520 KHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLN 579

Query: 304 EA 305
           EA
Sbjct: 580 EA 581



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 123/259 (47%), Gaps = 4/259 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           ++ +++  CK      A  +   +   G  P++VTY  ++ G C+ G+L  A+ +++++ 
Sbjct: 460 YSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMY 519

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
                PNA+TYTT +    RN K     ++++  + + +T +   Y  V+    + G+L 
Sbjct: 520 KHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLN 579

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA D + +M+  G   + V  N L++  C++GK   A  LL E   +G   +    T +I
Sbjct: 580 EACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVI 639

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EV 248
            G C+  +++ A   L+ M       +   Y  ++D L K  +I+ A  +   M     V
Sbjct: 640 HGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLV 699

Query: 249 KDSFTYSSMVHNLCKAKRL 267
               TY S++H  C+  R+
Sbjct: 700 PSPVTYRSVIHQYCRKGRV 718



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 147/303 (48%), Gaps = 10/303 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N ++  L K+ + D AL + +  +K  F  + V Y+ ++   CK G+++ A+
Sbjct: 418 LLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAK 477

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+   G  P+ +TYT+++    R  K     +++  M +     +   Y T +   
Sbjct: 478 ELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGL 537

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+  EA   M     +    + ++Y+ +++   +EGKL  A  ++ EM  +GF  + 
Sbjct: 538 CRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNP 597

Query: 186 YTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
               +L+  LC+ G  + A +L  E MNK G   N+  +  ++    +   ++ A+++ +
Sbjct: 598 VEINLLVHSLCRDGKPREANQLLKECMNK-GCAVNVVNFTTVIHGFCQKDDLEAALSLLD 656

Query: 245 SMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M +     D+ TY++++  L K  R+  A++L +  L+ G+       ++V+    H  
Sbjct: 657 DMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVI----HQY 712

Query: 301 CRR 303
           CR+
Sbjct: 713 CRK 715



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 4/233 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+   LNGLC+N  +  A +M    ++  + P  +TY++++ GL + G+L  A  +
Sbjct: 525 PNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDV 584

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++E+   G  PN +    ++    R+ K +   ++L     KG   +   + TVI  F +
Sbjct: 585 VREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQ 644

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              L+ A   ++ M       D V+Y  LI+   K  ++E A  L  +M +QG      T
Sbjct: 645 KDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVT 704

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHA 239
           +  +I   C+ G ++     L+ M     F +   AYN ++++L K G ++ A
Sbjct: 705 YRSVIHQYCRKGRVEDLLKLLKKMLLKSRFQT---AYNLVIEKLCKFGYLEEA 754



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 39/229 (17%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T++++++GL +    + A  + R +   GF P  V  N+L+  LC+ G+ R A  
Sbjct: 559 TPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQ 618

Query: 67  ILKELGDSGHA-----------------------------------PNAITYTTIMKCCF 91
           +LKE  + G A                                   P+ +TYT ++    
Sbjct: 619 LLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALA 678

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDI 150
           +  + +   E+   M R+G       Y +VI  + + GR+++    +++M+     Q   
Sbjct: 679 KTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLKKMLLKSRFQ--- 735

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
            +YN +I   CK G LE A  LL E+ +     D  T  +L++     G
Sbjct: 736 TAYNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVG 784



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 44/253 (17%)

Query: 102 ILSAMKRKGYTF--DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
           IL  M R+      + FG+  V+ ++ + GRL++A   +  M   GV+ ++   NT I++
Sbjct: 268 ILRLMTRRRIQLCPEAFGF--VMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHI 325

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA--------------- 204
                +L+ A    + M   G   +  T+  LI G C    +  A               
Sbjct: 326 LVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPD 385

Query: 205 ---------------RLH--LEYMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAINVF 243
                          RL+   E + K+  DS L      YN ++  L K G  D A+ + 
Sbjct: 386 KVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEIL 445

Query: 244 ESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
           +  E      D   YS++VH  CK  ++  A +L+      G         +V+DG    
Sbjct: 446 QEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRI 505

Query: 300 GCRREAKKIQSKI 312
           G   +AKK+  ++
Sbjct: 506 GKLDQAKKMMQQM 518



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 4/168 (2%)

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
           Y  D   Y  ++    K    + A   +  M    +QL   ++  ++  Y + G+L  A 
Sbjct: 242 YRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVMVSYSRAGRLRDAM 301

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            +L  M+K G E +       I  L     +K A    E M  IG   N+  YNC++   
Sbjct: 302 KVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGY 361

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
               ++D A+ + + M  K    D  +Y +++  LC+ KRL    +L+
Sbjct: 362 CNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELI 409


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 148/320 (46%), Gaps = 20/320 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P T+T++ ++  LC     +NA  +F+ ++  G VP++ TY ILI    KAG 
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A   L E+   G  P  +TYTT++    + +K  +  E+   M  KG   +   Y  
Sbjct: 540 IKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTA 599

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLD----------------IVSYNTLINLYCKEG 164
           +I  + K G +++A     +M  D    D                +V+Y  L++  CK  
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAH 659

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K++ A  LL+ M   G E +   +  LIDG CKA  +  A+     M + G++ N+  Y+
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYS 719

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++DRL KD ++D  + V   M       +   Y+ M+  L K  +   A KL+L   + 
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779

Query: 281 GVRILKSAQKAVVDGLRHSG 300
           G +       A++DG   +G
Sbjct: 780 GCKPNVVTYTAMIDGFGKAG 799



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 149/357 (41%), Gaps = 61/357 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    FN +++  CK+     A ++ + ++K    P  V YNILI  +C  G 
Sbjct: 369 MIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGE 428

Query: 61  L-----------------------------------------RTARWILKELGDSGHAPN 79
           L                                           A  ++ E+  +G  P+
Sbjct: 429 LPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPD 488

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
             TY+ ++       + +    +   MK  G   D + Y  +I  F K G +K+A ++++
Sbjct: 489 TSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLD 548

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           +MV DG +  +V+Y TLI+ Y K  K+  A  L + M  +G   +  T+T LIDG CK+G
Sbjct: 549 EMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSG 608

Query: 200 NIKGA----------------RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           NI+ A                 ++ +  N +    N+  Y  +VD L K  K+  A ++ 
Sbjct: 609 NIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLL 668

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           E+M V     ++  Y +++   CKA +L  A ++    ++ G         +++D L
Sbjct: 669 ETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRL 725



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 144/324 (44%), Gaps = 20/324 (6%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P T  +N M++GLC+  + + A+     ++    +P + TY IL+ G     +L   
Sbjct: 303 DFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRC 362

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK----RKGYTFDGFGYCT 120
           + IL  +   G  P+   + +++    ++  +    ++L  M+    + GY      Y  
Sbjct: 363 KRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVV----YNI 418

Query: 121 VIAAFVKIGRLKEATDY------MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           +I +    G L     +        +M++ G  L+ V+  +     C  GK E AY ++ 
Sbjct: 419 LIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIH 478

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           EM   GF  D  T++ +I  LC A  ++ A    + M   G   ++  Y  ++D   K G
Sbjct: 479 EMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAG 538

Query: 235 KIDHAINVFESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            I  A N  + M V+D       TY++++H   KAK++  A++L    +  G        
Sbjct: 539 IIKQAHNWLDEM-VRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITY 597

Query: 290 KAVVDGLRHSGCRREAKKIQSKIR 313
            A++DG   SG   +A +I +++R
Sbjct: 598 TALIDGYCKSGNIEKACQIYARMR 621



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 136/323 (42%), Gaps = 39/323 (12%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P T  ++ +++G CK    D A  +F  + + G+ P + TY+ LI  L K  RL     +
Sbjct: 678  PNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKV 737

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            L ++ ++  APN + YT ++    +  K     +++  M+ KG   +   Y  +I  F K
Sbjct: 738  LSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGK 797

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM----------- 176
             G++ +  +   +M + G   + V+Y  LIN  C  G L+ AY LL+EM           
Sbjct: 798  AGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSS 857

Query: 177  ----------------------EKQGFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMN- 212
                                  EK G       + +LID   KAG ++ A  LH E ++ 
Sbjct: 858  YCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISA 917

Query: 213  KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLP 268
             +   +    Y  ++       KIDHA  +F  M     + D  T+  ++  L + +R  
Sbjct: 918  SMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWE 977

Query: 269  SASKLLLSCLKSGVRILKSAQKA 291
             A +L  S  +  +  L+   K 
Sbjct: 978  EALQLSDSLCQMDINWLRREDKP 1000



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 19/280 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL--------------- 45
           MI     P   T+  +++G CK+   + A +++  ++    +P++               
Sbjct: 585 MIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPN 644

Query: 46  -VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
            VTY  L+ GLCKA +++ AR +L+ +   G  PN I Y  ++    +  K     E+  
Sbjct: 645 VVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFH 704

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            M  +GY  + + Y ++I    K  RL      + +M+ +    +IV Y  +I+   K  
Sbjct: 705 KMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVA 764

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K + AY L+  ME++G + +  T+T +IDG  KAG +         M   G   N   Y 
Sbjct: 765 KTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYT 824

Query: 225 CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA 264
            +++     G +D A  + E  E+K ++ +   V + CK 
Sbjct: 825 VLINHCCATGHLDEAYALLE--EMKQTY-WPKHVSSYCKV 861



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 138/347 (39%), Gaps = 66/347 (19%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C+N   + AL     L+  G+ P  +TYN L++   +A +L TA+ + +E+ 
Sbjct: 209 LNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS 268

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G + +  T     +   +  K++   E LS ++++ +  +   Y  +I+   +    +
Sbjct: 269 ELGLSMDEFTLGFFAQALCKVGKWR---EALSLIEKEDFVPNTILYNKMISGLCEASFFE 325

Query: 133 EATDYMEQ-----------------------------------MVTDGVQLDIVSYNTLI 157
           EA D++ +                                   M+ +G       +N+L+
Sbjct: 326 EAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLV 385

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           + YCK      AY LL +MEK   +     + ILI  +C  G + G          + F+
Sbjct: 386 HAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGP---------VTFE 436

Query: 218 SNLEAYNCIVDR---------------LGKDGKIDHAINVFESME----VKDSFTYSSMV 258
              +AYN ++                 L   GK + A  V   M     V D+ TYS ++
Sbjct: 437 LAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVI 496

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             LC A R+ +A  L      +GV         ++D    +G  ++A
Sbjct: 497 GFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQA 543



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 101/258 (39%), Gaps = 10/258 (3%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           +R  +  LR  RG  K      L   N+LI+  C+ G    A   L  L D G+ P  +T
Sbjct: 187 DRVPEEFLREIRGDDKEVLGKLL---NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMT 243

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
           Y  +++   R  K      +   M   G + D F       A  K+G+ +EA   +E+  
Sbjct: 244 YNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK-- 301

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
            +    + + YN +I+  C+    E A   L+ M       +  T+ IL+ G      + 
Sbjct: 302 -EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLG 360

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDSF-TYSSMV 258
             +  L  M   G   +   +N +V    K     +A  + + M   E K  +  Y+ ++
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420

Query: 259 HNLCKAKRLPSASKLLLS 276
            ++C    LP      L+
Sbjct: 421 GSICSGGELPGPVTFELA 438


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 151/300 (50%), Gaps = 4/300 (1%)

Query: 10   TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            T  +N ++ GL      D A  +F  +++ G  P+  TYN+L+  + K+ R+     + +
Sbjct: 755  TGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQE 814

Query: 70   ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            E+   G+    +TY TI+    ++R+ +  +++   +  +G++     Y  ++   +K G
Sbjct: 815  EMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAG 874

Query: 130  RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            R+++A +   +M+  G + +   YN L+N +   G  E    L  +M  QG   D  ++T
Sbjct: 875  RIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYT 934

Query: 190  ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            I+ID LCKAG +     +   + ++G + +L  YN ++D LGK  +++ A+++F  M+  
Sbjct: 935  IIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 994

Query: 248  --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              V + +TY+S++ +L KA +   A K+    L  G +       A++ G   SG    A
Sbjct: 995  GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSA 1054



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 152/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++ I +  L + +  D A R+   ++  G  P+++T+ +LI+ LC AGR+  A+ +
Sbjct: 228 PNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDV 287

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++  S   P+ +TY T++     N   +  +EI +AMK  GY  +   Y  VI A  +
Sbjct: 288 FWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQ 347

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+ EA +  ++M   G+  +  SYN+LI+ + K  +   A  L   M+  G + + YT
Sbjct: 348 VGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYT 407

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           H + I+   K+G    A    E M   G   ++ A N ++  L K G++  A  VF  ++
Sbjct: 408 HVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELK 467

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D+ TY+ M+    KA +   A K+    +++       A  +++D L  +G   
Sbjct: 468 AMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGD 527

Query: 304 EAKKIQSKIR 313
           EA +I  +++
Sbjct: 528 EAWRIFYQLK 537



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 118/254 (46%), Gaps = 4/254 (1%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            T+N +++GL K+R  + A+ ++  L   GF P   TY  L+ GL KAGR+  A  +  E+
Sbjct: 827  TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 886

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             + G   N   Y  ++         +    +   M  +G   D   Y  +I    K G+L
Sbjct: 887  LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 946

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             +   Y  Q++  G++ D+++YN LI+   K  +LE A  L +EM+K+G   + YT+  L
Sbjct: 947  NDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSL 1006

Query: 192  IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
            I  L KAG    A    E +   G+  N+  YN ++      G  D A   +  M V   
Sbjct: 1007 ILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGC 1066

Query: 249  -KDSFTYSSMVHNL 261
              +S TY  + + L
Sbjct: 1067 LPNSSTYMQLPNQL 1080



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 153/315 (48%), Gaps = 12/315 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T  + +N   K+  +  A++ +  ++  G VP++V  N ++ GL K+GRL  A+ +
Sbjct: 403 PNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRV 462

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             EL   G +P+ ITYT ++KCC +  K+   ++I   M       D     ++I    K
Sbjct: 463 FHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYK 522

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  EA     Q+    ++    +YNTL+    +EGK++    LL+EM    +  +  T
Sbjct: 523 AGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLIT 582

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++D LCK G +  A   L  M   G   +L +YN ++  L K+ + + A ++F  M+
Sbjct: 583 YNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMK 642

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLS-CLKSGVRILKSAQKAVVDG-LRHSGCR 302
              + D  T  +++ +  K   +  A  ++    L+ G +  +S+  ++++G L+ +G  
Sbjct: 643 KVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAG-- 700

Query: 303 REAKKIQSKIRMAKI 317
                I+  I  A+I
Sbjct: 701 -----IEKSIEFAEI 710



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 144/311 (46%), Gaps = 4/311 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++  L K+ +   AL ++R +   G VP + TY++L+    K   + T  W+L+E+
Sbjct: 162 TYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 221

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN  +YT  ++   + +++     IL+ M+ +G   D   +  +I      GR+
Sbjct: 222 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 281

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D   +M     + D V+Y TL++ +   G  ++   + + M+  G+  +   +T +
Sbjct: 282 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 341

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           ID LC+ G +  A    + M + G      +YN ++    K  +   A+ +F+ M++   
Sbjct: 342 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 401

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             + +T+   ++   K+     A +        G+     A  AV+ GL  SG    AK+
Sbjct: 402 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 461

Query: 308 IQSKIRMAKIS 318
           +  +++   +S
Sbjct: 462 VFHELKAMGVS 472



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 151/382 (39%), Gaps = 74/382 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +  P     N +++ L K    D A R+F  L++    P   TYN L+ GL + G+
Sbjct: 501 MIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGK 560

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-- 118
           ++    +L+E+  S + PN ITY TI+ C  +N      L++L +M  KG   D   Y  
Sbjct: 561 VKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNT 620

Query: 119 --------------------------------CTVIAAFVKIGRLKEA------------ 134
                                           CT++ +FVKIG +KEA            
Sbjct: 621 VIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPG 680

Query: 135 ------------------------TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
                                    ++ E + + G+ LD      LI   CK+ K   A+
Sbjct: 681 SKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAH 740

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            L+ + +  G       +  LI GL     I  A      M ++G   +   YN ++D +
Sbjct: 741 ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 800

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
           GK  +I+  + V E M  K       TY++++  L K++RL  A  L  + +  G     
Sbjct: 801 GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 860

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
                ++DGL  +G   +A+ +
Sbjct: 861 CTYGPLLDGLLKAGRIEDAENL 882



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 124/269 (46%), Gaps = 4/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF  +  GL       +A      +++ G V    TYN L+  L K+G  R A  + +
Sbjct: 125 VGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYR 184

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+  TY+ +M    + R  +  L +L  M+  G   + + Y   I    +  
Sbjct: 185 VMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAK 244

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R  EA   + +M  +G + D++++  LI + C  G++  A  +  +M+K   + D+ T+ 
Sbjct: 245 RFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYI 304

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            L+D     G+ +        M   G++ N+ AY  ++D L + G++  A+ +F+ M+  
Sbjct: 305 TLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 364

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             V + ++Y+S++    KA R   A +L 
Sbjct: 365 GIVPEQYSYNSLISGFLKADRFGDALELF 393



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 149/340 (43%), Gaps = 41/340 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA-- 58
           M   +  P   T+N +L+ LCKN   ++AL M   +   G +P+L +YN +I GL K   
Sbjct: 571 MYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEER 630

Query: 59  --------------------------------GRLRTARWILKE-LGDSGHAPNAITYTT 85
                                           G ++ A  I+K+     G   +  +  +
Sbjct: 631 YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHS 690

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +M+   +    +  +E    +   G T D F  C +I    K  +  EA + +++  + G
Sbjct: 691 LMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFG 750

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V L    YN+LI     E  ++ A  L  EM++ G   D++T+ +L+D + K+  I+   
Sbjct: 751 VSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEML 810

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHN 260
              E M++ G++S    YN I+  L K  +++ AI+++ ++ +   F     TY  ++  
Sbjct: 811 KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL-MSQGFSPTPCTYGPLLDG 869

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           L KA R+  A  L    L+ G +   +    +++G R +G
Sbjct: 870 LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAG 909



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 1/162 (0%)

Query: 9    CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
            CT  +NI+LNG      T+    +F+ +   G  P++ +Y I+I  LCKAG+L       
Sbjct: 895  CT-IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYF 953

Query: 69   KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
            ++L + G  P+ ITY  ++    ++++ +  + + + M++KG   + + Y ++I    K 
Sbjct: 954  RQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKA 1013

Query: 129  GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
            G+  EA    E+++T G + ++ +YN LI  Y   G  ++AY
Sbjct: 1014 GKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAY 1055



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 39/331 (11%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+  +L+    N  + + + ++  ++  G+   +V Y  +I  LC+ GR+  A
Sbjct: 295 DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 354

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  E+   G  P   +Y +++    +  ++   LE+   M   G   +G+ +   I  
Sbjct: 355 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINY 414

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K G   +A    E M + G+  D+V+ N ++    K G+L  A  +  E++  G   D
Sbjct: 415 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 474

Query: 185 KYTHTI-----------------------------------LIDGLCKAGNIKGARLHLE 209
             T+T+                                   LID L KAG    A     
Sbjct: 475 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFY 534

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAK 265
            + ++  +     YN ++  LG++GK+   +++ E M       +  TY++++  LCK  
Sbjct: 535 QLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNG 594

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +  A  +L S    G     S+   V+ GL
Sbjct: 595 AVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 625



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 118/267 (44%), Gaps = 4/267 (1%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           LIK LCK  +   A  ++K+    G +     Y +++          +   + + MK  G
Sbjct: 726 LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 785

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              D F Y  ++ A  K  R++E     E+M   G +   V+YNT+I+   K  +LE A 
Sbjct: 786 CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 845

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            L   +  QGF     T+  L+DGL KAG I+ A      M + G  +N   YN +++  
Sbjct: 846 DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 905

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
              G  +   ++F+ M  +    D  +Y+ ++  LCKA +L          L+ G+    
Sbjct: 906 RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDL 965

Query: 287 SAQKAVVDGLRHSGCRREAKKIQSKIR 313
                ++DGL  S    EA  + ++++
Sbjct: 966 ITYNLLIDGLGKSKRLEEAVSLFNEMQ 992



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P   T+N++++GL K++  + A+ +F  +QK G VP L TYN LI  L KAG+   A 
Sbjct: 961  LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAG 1020

Query: 66   WILKELGDSGHAPNAITYTTIMK 88
             + +EL   G  PN  TY  +++
Sbjct: 1021 KMYEELLTKGWKPNVFTYNALIR 1043


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 148/320 (46%), Gaps = 20/320 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P T+T++ ++  LC     +NA  +F+ ++  G VP++ TY ILI    KAG 
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++ A   L E+   G  P  +TYTT++    + +K  +  E+   M  KG   +   Y  
Sbjct: 540 IKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTA 599

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLD----------------IVSYNTLINLYCKEG 164
           +I  + K G +++A     +M  D    D                +V+Y  L++  CK  
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAH 659

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K++ A  LL+ M   G E +   +  LIDG CKA  +  A+     M + G++ N+  Y+
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYS 719

Query: 225 CIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            ++DRL KD ++D  + V   M       +   Y+ M+  L K  +   A KL+L   + 
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779

Query: 281 GVRILKSAQKAVVDGLRHSG 300
           G +       A++DG   +G
Sbjct: 780 GCKPNVVTYTAMIDGFGKAG 799



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 149/357 (41%), Gaps = 61/357 (17%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P    FN +++  CK+     A ++ + ++K    P  V YNILI  +C  G 
Sbjct: 369 MIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGE 428

Query: 61  L-----------------------------------------RTARWILKELGDSGHAPN 79
           L                                           A  ++ E+  +G  P+
Sbjct: 429 LPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPD 488

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
             TY+ ++       + +    +   MK  G   D + Y  +I  F K G +K+A ++++
Sbjct: 489 TSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLD 548

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           +MV DG +  +V+Y TLI+ Y K  K+  A  L + M  +G   +  T+T LIDG CK+G
Sbjct: 549 EMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSG 608

Query: 200 NIKGA----------------RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           NI+ A                 ++ +  N +    N+  Y  +VD L K  K+  A ++ 
Sbjct: 609 NIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLL 668

Query: 244 ESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           E+M V     ++  Y +++   CKA +L  A ++    ++ G         +++D L
Sbjct: 669 ETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRL 725



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 144/324 (44%), Gaps = 20/324 (6%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P T  +N M++GLC+  + + A+     ++    +P + TY IL+ G     +L   
Sbjct: 303 DFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRC 362

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK----RKGYTFDGFGYCT 120
           + IL  +   G  P+   + +++    ++  +    ++L  M+    + GY      Y  
Sbjct: 363 KRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVV----YNI 418

Query: 121 VIAAFVKIGRLKEATDY------MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           +I +    G L     +        +M++ G  L+ V+  +     C  GK E AY ++ 
Sbjct: 419 LIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIH 478

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           EM   GF  D  T++ +I  LC A  ++ A    + M   G   ++  Y  ++D   K G
Sbjct: 479 EMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAG 538

Query: 235 KIDHAINVFESMEVKDS-----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
            I  A N  + M V+D       TY++++H   KAK++  A++L    +  G        
Sbjct: 539 IIKQAHNWLDEM-VRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITY 597

Query: 290 KAVVDGLRHSGCRREAKKIQSKIR 313
            A++DG   SG   +A +I +++R
Sbjct: 598 TALIDGYCKSGNIEKACQIYARMR 621



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 147/339 (43%), Gaps = 24/339 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL--------------- 45
           MI     P   T+  +++G CK+   + A +++  ++    +P++               
Sbjct: 585 MIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPN 644

Query: 46  -VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104
            VTY  L+ GLCKA +++ AR +L+ +   G  PN I Y  ++    +  K     E+  
Sbjct: 645 VVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFH 704

Query: 105 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164
            M   GY  + + Y ++I    K  RL      + +M+ +    +IV Y  +I+   K  
Sbjct: 705 KMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVA 764

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           K + AY L+  ME++G + +  T+T +IDG  KAG +         M   G   N   Y 
Sbjct: 765 KTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYT 824

Query: 225 CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA-----KRLPSASKLLLSCLK 279
            +++     G +D A  + E  E+K ++ +   V + CK      +    +  LL    K
Sbjct: 825 VLINHCCATGHLDEAYALLE--EMKQTY-WPKHVSSYCKVIEGYKREFILSLGLLEEVEK 881

Query: 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
           +G   +    K ++D    +G    A ++  ++  A +S
Sbjct: 882 NGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMS 920



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 138/347 (39%), Gaps = 66/347 (19%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C+N   + AL     L+  G+ P  +TYN L++   +A +L TA+ + +E+ 
Sbjct: 209 LNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS 268

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G + +  T     +   +  K++   E LS ++++ +  +   Y  +I+   +    +
Sbjct: 269 ELGLSMDEFTLGFFAQALCKVGKWR---EALSLIEKEDFVPNTILYNKMISGLCEASFFE 325

Query: 133 EATDYMEQ-----------------------------------MVTDGVQLDIVSYNTLI 157
           EA D++ +                                   M+ +G       +N+L+
Sbjct: 326 EAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLV 385

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           + YCK      AY LL +MEK   +     + ILI  +C  G + G          + F+
Sbjct: 386 HAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGP---------VTFE 436

Query: 218 SNLEAYNCIVDR---------------LGKDGKIDHAINVFESME----VKDSFTYSSMV 258
              +AYN ++                 L   GK + A  V   M     V D+ TYS ++
Sbjct: 437 LAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVI 496

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             LC A R+ +A  L      +GV         ++D    +G  ++A
Sbjct: 497 GFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQA 543



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 35/233 (15%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +  M++GL K   TD A ++   +++ G  P +VTY  +I G  KAG+
Sbjct: 741 MLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK-CCFR--------------------------- 92
           +     + +E+G  G APN +TYT ++  CC                             
Sbjct: 801 VDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCK 860

Query: 93  -----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
                 R++ L L +L  +++ G       Y  +I  FVK GRL+ A +  +++++  + 
Sbjct: 861 VIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMS 920

Query: 148 LDIVS--YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
           +      Y +LI  +    K+  A+ L  +M + G   D  T   L+ GL + 
Sbjct: 921 MAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRV 973



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 101/258 (39%), Gaps = 10/258 (3%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82
           +R  +  LR  RG  K      L   N+LI+  C+ G    A   L  L D G+ P  +T
Sbjct: 187 DRVPEEFLREIRGDDKEVLGKLL---NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMT 243

Query: 83  YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142
           Y  +++   R  K      +   M   G + D F       A  K+G+ +EA   +E+  
Sbjct: 244 YNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK-- 301

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
            +    + + YN +I+  C+    E A   L+ M       +  T+ IL+ G      + 
Sbjct: 302 -EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLG 360

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDSF-TYSSMV 258
             +  L  M   G   +   +N +V    K     +A  + + M   E K  +  Y+ ++
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420

Query: 259 HNLCKAKRLPSASKLLLS 276
            ++C    LP      L+
Sbjct: 421 GSICSGGELPGPVTFELA 438


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 150/312 (48%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N +++G+CK+++ ++A  ++         P++ TYN LI G C  G+L+ A 
Sbjct: 329 VQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAI 388

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P+  T++ ++    ++   K    +L+ M ++    D   Y +++  +
Sbjct: 389 DLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGY 448

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +  + +A      M   GV  ++ SYN +IN +CK   ++ A  L  EM  +    D 
Sbjct: 449 CLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDV 508

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ LIDGLCK+G I  A   ++ M+  G   ++  YN I+D L K   +D AI +   
Sbjct: 509 ITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTK 568

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++ +    D  TY+ +V  LC++ +L  A K+    L  G  +   A   ++ G    G 
Sbjct: 569 LKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGL 628

Query: 302 RREAKKIQSKIR 313
             EA  + SK+ 
Sbjct: 629 FDEALALLSKME 640



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 133/271 (49%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T    + G C       AL     +   GF  + V+Y  LI GLCK G  + A  +
Sbjct: 261 PDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALEL 320

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+        P+ + Y TI+    +++      ++ S    K    D F Y  +I+ F  
Sbjct: 321 LRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCI 380

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LK+A D   +M +  +  D+ +++ L++ +CK+G ++ A  +L  M KQ  + D  T
Sbjct: 381 VGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVT 440

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ L+DG C    +  A      M+  G  +N+++YN +++   K   +D A+ +F+ M 
Sbjct: 441 YSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMH 500

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            K    D  TYSS++  LCK+ R+  A +L+
Sbjct: 501 HKQIFPDVITYSSLIDGLCKSGRISYALELV 531



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   ++ P   TF+I+++G CK+     A  +   + K    P++VTY+ L+ G C    
Sbjct: 394 MTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE 453

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I   +   G   N  +Y  ++    + +     +++   M  K    D   Y +
Sbjct: 454 VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K GR+  A + +++M   G Q DI++YN++++  CK+  ++ A  LL +++ QG
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+TIL+ GLC++G ++ AR   E +   G++ ++ AY  ++      G  D A+
Sbjct: 574 IRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEAL 633

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +   ME    + D+ TY  ++ +L +      A KLL   +  G+ +  +        +
Sbjct: 634 ALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLVALTDDLVASILV 693

Query: 297 RHSGCRREA 305
           R + C R A
Sbjct: 694 RRTWCARLA 702



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 127/267 (47%), Gaps = 4/267 (1%)

Query: 38  KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97
           K+G+ P+ +T    IKG C  G++  A     ++   G   + ++Y T++    +  + K
Sbjct: 256 KNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETK 315

Query: 98  LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
             LE+L     K    D   Y T+I    K   + +A D   + V+  +  D+ +YN LI
Sbjct: 316 AALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALI 375

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           + +C  GKL+ A  L ++M  +    D YT +IL+DG CK GNIK A+  L  M K    
Sbjct: 376 SGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIK 435

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            ++  Y+ ++D      +++ A ++F +M       +  +Y+ M++  CK K +  A KL
Sbjct: 436 PDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKL 495

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSG 300
                   +        +++DGL  SG
Sbjct: 496 FKEMHHKQIFPDVITYSSLIDGLCKSG 522



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 134/328 (40%), Gaps = 35/328 (10%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP    F  +L  L K+++    L + + ++  G     +  NILI   C+ G +  A  
Sbjct: 107 TPPDIEFGKILGSLVKSKHYHTVLSLSQKMEFKGIKLNFLNCNILINSFCQLGLIPFAFS 166

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYK------LGLEILSAMKR-------KGYTF 113
           +L            + +  I+K CF  +  +        + IL   KR       +   F
Sbjct: 167 VLTR---------GVYWIEILKDCFDRKNLEDFKRLCWIVLILWDFKRLFLKDFLQSRLF 217

Query: 114 DGFGYCTVIAAFVK--------IGRLKEATDYME-QMVTDGVQLDIVSYNTLINLYCKEG 164
           +      ++  + K        +   + + +Y   +++ +G + D ++  T I  +C +G
Sbjct: 218 NVLHSFKILIEYHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIKGFCLKG 277

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           ++  A    D++   GF  D+ ++  LI+GLCK G  K A   L   +      ++  YN
Sbjct: 278 QIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYN 337

Query: 225 CIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            I+D + KD  ++ A +++     K    D FTY++++   C   +L  A  L       
Sbjct: 338 TIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSK 397

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +         +VDG    G  +EAK +
Sbjct: 398 NIIPDVYTFSILVDGFCKDGNIKEAKNV 425


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 139/298 (46%), Gaps = 4/298 (1%)

Query: 15  IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74
           +M+ GLC     +   R+       G VP  V YN+LI G C+ G +     +L E+   
Sbjct: 281 VMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMK 340

Query: 75  GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134
           G  P  +TY  I+    R         +L  MK +G + +   Y TVI A  K     +A
Sbjct: 341 GIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQA 400

Query: 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194
              + QMV      D+V++NTLI  +C+EG +E A  LL E  ++  E ++ ++T LI G
Sbjct: 401 LAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHG 460

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKD 250
            C  G +  A   L  M   G   ++     ++  L   G++D A+ V E M     + D
Sbjct: 461 FCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPD 520

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +  Y+ ++  LCK + L +A  LL+  L+  V+  K     ++DG   S    +A+KI
Sbjct: 521 ANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKI 578



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 137/279 (49%), Gaps = 6/279 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P    +N ++  LCK R    AL +   +    F P++VT+N LI   C+ G +  A 
Sbjct: 377 LSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEAL 436

Query: 66  WILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            +L+E       PN ++YT ++   C R  +  +  ++L  M  +G+T D      +I  
Sbjct: 437 KLLREAIRRELEPNQLSYTPLIHGFCVRG-EVMVASDLLVEMIGRGHTPDVVTLGALIHG 495

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            V  G++ EA    E+M    V  D   YN LI+  CK+  L AA  LL EM +Q  + D
Sbjct: 496 LVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPD 555

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           K+ +T LIDG  ++  +  AR   E+M + G   ++ AYN ++    K G ++ A+    
Sbjct: 556 KFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMS 615

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           SM     + D FTY++++    K   + +A + L   +K
Sbjct: 616 SMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMK 654



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 123/302 (40%), Gaps = 39/302 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TFN ++   C+    + AL++ R   +    P  ++Y  LI G C  G 
Sbjct: 407 MVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGE 466

Query: 61  LRTARWILKELGDSGHAPNAIT-----------------------------------YTT 85
           +  A  +L E+   GH P+ +T                                   Y  
Sbjct: 467 VMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNV 526

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           ++    + R       +L  M  +    D F Y T+I  F++  +L +A    E M   G
Sbjct: 527 LISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKG 586

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
              DIV+YN +I  YCK G +  A + +  M K G   D++T+T LIDG  K G+IK A 
Sbjct: 587 GYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAAL 646

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT----YSSMVHNL 261
             L  M K     N+  Y  ++      G  D A  +F SM+ +  F     Y+ ++ +L
Sbjct: 647 RFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSL 706

Query: 262 CK 263
            K
Sbjct: 707 FK 708



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 117/261 (44%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    TP   T   +++GL  +   D AL +   + +   +P+   YN+LI GLCK   
Sbjct: 477 MIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRM 536

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A+ +L E+ +    P+   YTT++    R+ K     +I   M+ KG   D   Y  
Sbjct: 537 LSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNA 596

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + K G + EA   M  M   G   D  +Y TLI+ Y K+G ++AA   L +M K+ 
Sbjct: 597 MIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRR 656

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+  LI G C  GN   A +    M   G   N+  Y  ++  L K  K   A 
Sbjct: 657 CKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAA 716

Query: 241 NVFESMEVKDSFTYSSMVHNL 261
             FE M +       + +H L
Sbjct: 717 AYFEHMLLNHCSPNDATMHYL 737



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 142/311 (45%), Gaps = 4/311 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    +N++++G C+       L +   ++  G +P +VTY  +I  L +   L     
Sbjct: 308 VPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIES 367

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E+ + G +PN   Y T++    + R     L +L+ M    +  D   + T+IAAF 
Sbjct: 368 LLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFC 427

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G ++EA   + + +   ++ + +SY  LI+ +C  G++  A  LL EM  +G   D  
Sbjct: 428 REGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVV 487

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-ES 245
           T   LI GL  +G +  A +  E M +     +   YN ++  L K   +  A N+  E 
Sbjct: 488 TLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEM 547

Query: 246 MEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +E K   D F Y++++    ++ +L  A K+     + G      A  A++ G   SG  
Sbjct: 548 LEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMM 607

Query: 303 REAKKIQSKIR 313
            EA    S +R
Sbjct: 608 NEAVMCMSSMR 618



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 128/310 (41%), Gaps = 54/310 (17%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N++++GLCK R    A  +   + +    P+   Y  LI G  ++ +L  AR
Sbjct: 517 VMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDAR 576

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I + + + G   + + Y  ++K   ++      +  +S+M++ G   D F Y T+I  +
Sbjct: 577 KIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGY 636

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G +K A  ++  M+    + +IV+Y +LI  YC  G  ++A +L   M+ +G   + 
Sbjct: 637 AKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNV 696

Query: 186 YTHTILIDGL-------------------------------------CKAGNI------- 201
             +T+LI  L                                     C+ G I       
Sbjct: 697 VHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDT 756

Query: 202 -----KGARLHL-EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS 251
                K A L + + +   G D  + AYN I+  L +   +  A+ + E M  K    D 
Sbjct: 757 DQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDP 816

Query: 252 FTYSSMVHNL 261
            T+ S+++  
Sbjct: 817 VTFLSLLYGF 826



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 4/170 (2%)

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           D +  C ++      GR++E    +E    +G     V YN LI+ YC+ G +    LLL
Sbjct: 275 DDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLL 334

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            EME +G      T+  +I  L +  ++      L  M + G   N++ YN ++  L K 
Sbjct: 335 GEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKC 394

Query: 234 GKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
                A+ V   M       D  T+++++   C+   +  A KLL   ++
Sbjct: 395 RSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIR 444



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 15/102 (14%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRY---------TDNA------LRMFRGLQKHGFVPEL 45
           M+    +P  AT + ++NGL   RY         TD A      L +F+GL   G  P +
Sbjct: 722 MLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRI 781

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
             YN +I  LC+   L  A  + +++ + G  P+ +T+ +++
Sbjct: 782 SAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLL 823


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 132/271 (48%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF I++N LCK    + A  +   ++K G +P L TYN LI GL +A RL  A  +
Sbjct: 367 PDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDL 426

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +   G  P A TY  ++    ++      LE    MK +G   +       + +  +
Sbjct: 427 FSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAE 486

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GRL EA     ++ + G+  D V+YN ++  Y K G+++ A  LL EM K   E D   
Sbjct: 487 MGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIV 546

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              LID L KAG ++ A      M ++     +  YN ++  LGK+G+I  A+ +FESM 
Sbjct: 547 INSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMN 606

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
                 ++ T+++++  LCK   +  A K+ 
Sbjct: 607 GHGCSPNTITFNTLLDCLCKNDEVDLALKMF 637



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 4/286 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF+ ++    K R     + +   ++  G  P + TY I I+ L + G+
Sbjct: 220 MVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGK 279

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I+K + D G  P+ +TYT ++      RK    + + + MK   +  D   Y T
Sbjct: 280 IDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVT 339

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F   G L +      +M  DG   D+V++  L+N  CK G++  A+ LLD M KQG
Sbjct: 340 LLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQG 399

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T+  LI GL +A  +  A      M  +G +     Y  ++D  GK G    A+
Sbjct: 400 VLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKAL 459

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             FE M+ +    +    ++ +++L +  RL  A  +      SG+
Sbjct: 460 ETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGL 505



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 117/236 (49%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N +++ L ++ +   AL ++R +   G  P L T++ L+    K   ++T   +L+E+
Sbjct: 196 SYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEM 255

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN  TYT  ++   R+ K      I+  M   G   D   Y  +I A     +L
Sbjct: 256 ESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKL 315

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A     +M +   + D V+Y TL++ +   G L+    +  EME  G+  D  T TIL
Sbjct: 316 DDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTIL 375

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ LCKAG I  A   L+ M K G   NL  YN ++  L +  ++D A+++F +ME
Sbjct: 376 VNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNME 431



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 39/309 (12%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P T T+N +++   K+   +    ++  +   G  P  +TYN++I  L K+ RL  A  +
Sbjct: 823  PDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDL 882

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
               L     +P   T+                          G   DG          +K
Sbjct: 883  YYNLVSGDFSPTPCTF--------------------------GPLIDG---------LLK 907

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             GRL +A +  + MV  G + +   YN L+N Y K G ++ A      M K+G   D  +
Sbjct: 908  SGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKS 967

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +TIL+D LC AG +  A  + E + + G D +L AYN +++ LG+  + + A+++F  M+
Sbjct: 968  YTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQ 1027

Query: 248  ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                V D +TY+S++ NL     +  A K+       G++       A++ G   SG   
Sbjct: 1028 NRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSE 1087

Query: 304  EAKKIQSKI 312
             A  I  K+
Sbjct: 1088 LAYGIYKKM 1096



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 5/300 (1%)

Query: 20   LCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
            LCK++ T  A  +F    K  G  P L  YN+LI G  +   +  A  + +E+  +G AP
Sbjct: 764  LCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAP 823

Query: 79   NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
            +  TY +++    ++ K     ++   M  +G   +   Y  VI+  VK  RL +A D  
Sbjct: 824  DTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLY 883

Query: 139  EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
              +V+        ++  LI+   K G+L+ A+ + D M   G   +   + IL++G  K 
Sbjct: 884  YNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKL 943

Query: 199  GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTY 254
            G++  A    + M K G   +L++Y  +VD L   G++D A++ FE ++      D   Y
Sbjct: 944  GHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAY 1003

Query: 255  SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314
            + M++ L +++R   A  L       G+        +++  L   G   EA KI  +++ 
Sbjct: 1004 NLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQF 1063



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 110/241 (45%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P T T+N++++ L K+   D A+ ++  L    F P   T+  LI GL K+GRL  A  +
Sbjct: 858  PNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEM 917

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
               +   G  PN+  Y  ++    +        E    M ++G   D   Y  ++     
Sbjct: 918  FDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCI 977

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             GR+ +A  Y E++   G+  D+V+YN +IN   +  + E A  L  EM+ +G   D YT
Sbjct: 978  AGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYT 1037

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +  LI  L   G I+ A    E +  IG   N+  YN ++      G  + A  +++ M 
Sbjct: 1038 YNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMM 1097

Query: 248  V 248
            V
Sbjct: 1098 V 1098



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 131/310 (42%), Gaps = 42/310 (13%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           CG   P   T+ ++++ LC  R  D+A+ +F  ++     P+ VTY  L+      G L 
Sbjct: 295 CG---PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLD 351

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
               I  E+   G+AP+ +T+T +                                   +
Sbjct: 352 KVEKIWTEMEADGYAPDVVTFTIL-----------------------------------V 376

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
            A  K GR+ EA D ++ M   GV  ++ +YNTLI+   +  +L+ A  L   ME  G E
Sbjct: 377 NALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVE 436

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
              YT+ +LID   K+G+   A    E M   G   N+ A N  +  L + G++  A  +
Sbjct: 437 PTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAM 496

Query: 243 FESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F  ++      DS TY+ M+    K  ++  A KLL    K           +++D L  
Sbjct: 497 FNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYK 556

Query: 299 SGCRREAKKI 308
           +G   EA ++
Sbjct: 557 AGRVEEAWQM 566



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 137/295 (46%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+ ++++   K+ +   AL  F  ++  G  P +V  N  +  L + GRL  A+
Sbjct: 435 VEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAK 494

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  EL  SG AP+++TY  +MKC  +  +    +++LS M +     D     ++I   
Sbjct: 495 AMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTL 554

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K GR++EA     +M    +   +V+YN L+    KEG+++ A  L + M   G   + 
Sbjct: 555 YKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNT 614

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T   L+D LCK   +  A      M  +    ++  +N I+    K  +I +AI +F  
Sbjct: 615 ITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQ 674

Query: 246 MEV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCL-KSGVRILKSAQKAVVDGL 296
           M+     D  T  +++  + K+ ++  A ++      + G  I +S  + V+ G+
Sbjct: 675 MKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGI 729



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 133/287 (46%), Gaps = 4/287 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           +++ GFV    +YN LI  L ++G  + A  + + +   G  P+  T++ +M    + R 
Sbjct: 185 MREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRN 244

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
            K  + +L  M+  G   + + Y   I    + G++ EA   M++M  DG   D+V+Y  
Sbjct: 245 IKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTV 304

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           LI+  C   KL+ A  L  +M+    + DK T+  L+D     G++         M   G
Sbjct: 305 LIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADG 364

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
           +  ++  +  +V+ L K G+I+ A ++ ++M     + +  TY++++  L +A RL  A 
Sbjct: 365 YAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDAL 424

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            L  +    GV         ++D    SG   +A +   K++   I+
Sbjct: 425 DLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIA 471



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 145/345 (42%), Gaps = 42/345 (12%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   T+NI+L GL K      A+++F  +  HG  P  +T+N L+  LCK   +  A
Sbjct: 574 NLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLA 633

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  ++      P+ +T+ TI+    +  + K  + +   MK K    D    CT++  
Sbjct: 634 LKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMK-KLLRPDHVTLCTLLPG 692

Query: 125 FVKIGRLKEA--------------------TDYM----------------EQMVTDGVQL 148
            +K G++++A                     D M                E++V   +  
Sbjct: 693 VIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICK 752

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCKAGNIKGARLH 207
           D      +I + CK  K   A  +  +  K+ G +     + +LIDG  +  N++ A   
Sbjct: 753 DDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNL 812

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
            E M   G   +   YN ++D  GK GKI+   ++++ M  +    ++ TY+ ++ NL K
Sbjct: 813 FEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVK 872

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           + RL  A  L  + +             ++DGL  SG   +A ++
Sbjct: 873 SNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEM 917



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 2/183 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P +A +NI++NG  K  + D A   F+ + K G  P+L +Y IL+  LC AGR+  A   
Sbjct: 928  PNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHY 987

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++L  +G  P+ + Y  ++    R+++ +  L +   M+ +G   D + Y ++I     
Sbjct: 988  FEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGI 1047

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            +G ++EA    E++   G++ ++ +YN LI  Y   G  E AY +  +M   G  CD  T
Sbjct: 1048 VGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGG--CDPNT 1105

Query: 188  HTI 190
             T 
Sbjct: 1106 GTF 1108



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 39/257 (15%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
           N  TY  I K  F     +     L  M+  G+  + + Y  +I   ++ G  KEA +  
Sbjct: 158 NVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVY 217

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
            +MV++G++  + +++ L+    K   ++    LL+EME  G   + YT+TI I  L + 
Sbjct: 218 RRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRD 277

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----------- 247
           G I  A   ++ M+  G   ++  Y  ++D L    K+D A+ +F  M+           
Sbjct: 278 GKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTY 337

Query: 248 ----------------------------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
                                         D  T++ +V+ LCKA R+  A  LL +  K
Sbjct: 338 VTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRK 397

Query: 280 SGVRILKSAQKAVVDGL 296
            GV         ++ GL
Sbjct: 398 QGVLPNLHTYNTLISGL 414


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 147/304 (48%), Gaps = 5/304 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  ++N  C+      A  +F     +G  P   TY +LI G CK G++  A  +L ++ 
Sbjct: 240 YTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQ 299

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G   N I + T++    R       L++ +AM++ G   D + Y T+     ++ R+ 
Sbjct: 300 GRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMA 359

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA   +  M+  GV  + V+Y TLI+++CKEG +  A  L  EM  +G      T+ +++
Sbjct: 360 EAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMM 419

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS- 251
           DG  K G+I+ A    + M K G   ++  Y  +V     +GK+D A+ +FE M+ + + 
Sbjct: 420 DGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTE 479

Query: 252 ---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
                Y++++  L K  R   A +L    LK+G+    S   A+V  L H+  R++    
Sbjct: 480 PNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSL-HTDNRKDIHHK 538

Query: 309 QSKI 312
           Q K+
Sbjct: 539 QIKV 542



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 118/238 (49%), Gaps = 4/238 (1%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           ++++ G CK+GR+  AR +L E+   G   NA+ Y +++ C  R +      E+L  M+ 
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMEN 195

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
            G       Y  ++ +    G + +    +++M    V  D+  Y  +IN YC+ G +  
Sbjct: 196 GGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRR 255

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  + DE    G E ++ T+ +LI+G CK G ++ A + L  M   G   N   +N ++D
Sbjct: 256 ASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMID 315

Query: 229 RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              + G +D+A+ V  +ME      D +TY+++   LC+  R+  A  LL   ++ GV
Sbjct: 316 GYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGV 373



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 148/317 (46%), Gaps = 14/317 (4%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G ++P  A+  ++++G CK+   D+A  +   + +HG     + YN L+   C   R   
Sbjct: 128 GSVSPLAAS--VVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLD--CYVRRKDD 183

Query: 64  ARW--ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
           AR   +L+ + + G      TYT ++              ++  MK K    D + Y  V
Sbjct: 184 ARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAV 243

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I A+ + G ++ A++  ++ V +G++ +  +Y  LIN +CK G++EAA +LL +M+ +G 
Sbjct: 244 INAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGV 303

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN------CIVDRLGKDGK 235
             ++     +IDG C+ G +  A      M K+G + ++  YN      C V+R+ +   
Sbjct: 304 GHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKT 363

Query: 236 IDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + H +   E     +  TY++++   CK   +  A +L       G          ++DG
Sbjct: 364 LLHIM--IEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDG 421

Query: 296 LRHSGCRREAKKIQSKI 312
               G  REA++ + ++
Sbjct: 422 YIKKGSIREAERFRKEM 438



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P   T+  +++  CK      A R+FR +   G +P +VTYN+++ G  K G 
Sbjct: 368 MIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGS 427

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A    KE+   G  P+  TY +++     N K  + L++   MK +G   +   Y  
Sbjct: 428 IREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTA 487

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157
           +I+   K GR +EA    + M+  G+  D   Y+ L+
Sbjct: 488 LISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALV 524


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 135/295 (45%), Gaps = 39/295 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T +F+I+++GLC     D AL +FR + + G    ++ YN LI  L  + RL     +
Sbjct: 415 PXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLL 474

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI------------------------- 102
           LKE+  SG  P   T+ +I  C  R       L++                         
Sbjct: 475 LKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCK 534

Query: 103 ----------LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
                     L+ M R+G+  D   Y   I  FVKI  + +A +    +   G   D+V+
Sbjct: 535 RKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVA 594

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YNTLIN +CK  ++  A+ +LDEM  +G      T+ +LIDG CK G+I  A   L  M 
Sbjct: 595 YNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMV 654

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
               + N+  Y  ++D L   G+ D AI+++  M  K    +  ++ +++H LCK
Sbjct: 655 GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCK 709



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 129/277 (46%), Gaps = 3/277 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N +   LC+      AL M R ++ HG  P +  Y +L+K LCK  R   A   
Sbjct: 485 PTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNF 544

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ + Y+  +    + +     LEI   +  +GY  D   Y T+I  F K
Sbjct: 545 LAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCK 604

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + R+ EA D +++MV  G+   +V+YN LI+ +CK G ++ A+  L  M  +  E +  T
Sbjct: 605 VKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVIT 664

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +T LIDGLC AG    A      M   G   N  ++  ++  L K G  D A+  F  M 
Sbjct: 665 YTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMG 724

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             E  D+  Y +++ +    K    A ++L   +  G
Sbjct: 725 ERETPDTIVYVALITSFISNKNPTLAFEILKEMVAKG 761



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 35/213 (16%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    ++  ++G  K +  D AL +FR +   G+ P++V YN LI G CK  R
Sbjct: 548 MVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKR 607

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  IL E+   G  P+ +TY  ++                             G+C 
Sbjct: 608 VSEAHDILDEMVAKGLVPSVVTYNLLID----------------------------GWC- 638

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                 K G + +A   + +MV    + ++++Y TLI+  C  G+ + A  L +EM  +G
Sbjct: 639 ------KNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKG 692

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
              ++ +   LI GLCK G    A L+   M +
Sbjct: 693 CSPNRISFIALIHGLCKCGWPDAALLYFREMGE 725



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 128/267 (47%), Gaps = 23/267 (8%)

Query: 54  GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
            + K+G +      LKE+ DSG  P+  T T++++    +RK+   L + + +  +G+  
Sbjct: 168 AISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWV- 226

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           DG     ++  F K G + +A + +E+M   G++L+  ++  LI+ + ++ +++ A  L 
Sbjct: 227 DGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLF 286

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            +M+K GF  D   +  LI GLC    I+ A   L  M ++G D +++  + ++    ++
Sbjct: 287 KKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEE 346

Query: 234 GKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLS------------- 276
             I   I   E +E  D+      Y+S+++ L   K +  A  LL +             
Sbjct: 347 VDIYRLIE--ERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVN 404

Query: 277 ---CLKSGVRILKSAQKAVVDGLRHSG 300
               +K  VR   ++   V+DGL ++G
Sbjct: 405 KFFMVKEMVRPXTTSFSIVIDGLCNTG 431



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 131/306 (42%), Gaps = 24/306 (7%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF ++++G  +    D AL++F+ +QK GF P++  Y+ LI GLC    +  A  +L E+
Sbjct: 265 TFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEM 324

Query: 72  GDSGHAPNAITYTTIMKCCFRNRK-YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            + G  P+    + ++  C      Y+L  E L  +  +        Y +V+   V    
Sbjct: 325 KELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDTEAMLL---LYNSVLNGLVNGKS 381

Query: 131 LKEA------------TDYMEQ----MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           + +A            TD  E     MV + V+    S++ +I+  C  GKL+ A  L  
Sbjct: 382 VDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFR 441

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
           +M + G + +   +  LID L  +  ++   L L+ M   GF      +N I   L +  
Sbjct: 442 DMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRRE 501

Query: 235 KIDHAINVFESMEVKDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
            +  A+++   M V         Y+ +V  LCK KR   A   L   ++ G      A  
Sbjct: 502 DVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYS 561

Query: 291 AVVDGL 296
           A +DG 
Sbjct: 562 AAIDGF 567



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+  +++GLC     D+A+ ++  ++  G  P  +++  LI GLCK G 
Sbjct: 653 MVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGW 712

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
              A    +E+G+    P+ I Y  ++     N+   L  EIL  M  KG
Sbjct: 713 PDAALLYFREMGER-ETPDTIVYVALITSFISNKNPTLAFEILKEMVAKG 761


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 7/285 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG---FVPELVTYNILIKGLCKAGRLRT 63
           TP   +++I+L G C  +  + AL +   +   G     P +VTY  +I GLCKA  +  
Sbjct: 161 TPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDR 220

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A+ + + + D G  PN  TYT ++       K+K  +++L  M   G   D + Y  ++ 
Sbjct: 221 AKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLD 280

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA +  + ++  G++ ++  Y  L++ Y  EG L   +  LD M   G   
Sbjct: 281 YLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSP 340

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D +   I+     K   I  A    + M +     N+  Y  ++D L K G++D A+  F
Sbjct: 341 DHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKF 400

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
             M       D F +SS+V+ LC   +   A +L    L  G+R+
Sbjct: 401 NQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRL 445



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 150/316 (47%), Gaps = 4/316 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P    FNIM     K    D A+ +F  +++    P +VTY  LI  LCK GR
Sbjct: 333 MVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGR 392

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A     ++ D G  P+   +++++       K++   E+   +  +G   D   + T
Sbjct: 393 VDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNT 452

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    + GR+ EA   ++ M+  GV+ D++SYNTL++ +C  G+++ A  LLD +   G
Sbjct: 453 LMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIG 512

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + DK T+  L+ G CKA  I  A      M   G   ++  YN I+  L + G+   A 
Sbjct: 513 LKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAK 572

Query: 241 NVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ++ SM       + +TY+ +++ LCK   +  A K+  S     +++       ++  L
Sbjct: 573 ELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGAL 632

Query: 297 RHSGCRREAKKIQSKI 312
              G + +A  + + I
Sbjct: 633 LKGGRKEDAMDLFATI 648



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 144/313 (46%), Gaps = 4/313 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G  TP   T+  +++GLCK +  D A  +F+ +   G  P   TY  LI G    G+ + 
Sbjct: 196 GSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKE 255

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              +L+E+   G  P+   Y  ++    +N +      I  ++ RKG   +   Y  ++ 
Sbjct: 256 VVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLH 315

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            +   G L E   +++ MV +GV  D   +N +   Y K+  ++ A  + D+M +Q    
Sbjct: 316 GYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSP 375

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +  T+  LID LCK G +  A L    M   G   ++  ++ +V  L    K + A  +F
Sbjct: 376 NIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELF 435

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
             +  +    D+  +++++ NLC+  R+  A +L+   L+ GVR    +   +VDG   +
Sbjct: 436 FEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLT 495

Query: 300 GCRREAKKIQSKI 312
           G   EA K+   I
Sbjct: 496 GRIDEAAKLLDVI 508



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  FN ++  LC+      A R+   + + G  P++++YN L+ G C  GR+  A  +L 
Sbjct: 447 TVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLD 506

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+ +TY T++    + R+      +   M  KG T D   Y T++    + G
Sbjct: 507 VIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTG 566

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R  EA +    M+    Q++I +YN +IN  CK   ++ A+ +   +  +  + D +T  
Sbjct: 567 RFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTAN 626

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           I+I  L K G  + A      ++  G   ++E Y  I + L K+G ++    +F +ME  
Sbjct: 627 IMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEEN 686

Query: 250 DSFTYSSMVHNLCK 263
            +   S M++ L +
Sbjct: 687 GTAPNSRMLNALVR 700



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 146/347 (42%), Gaps = 41/347 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T+  +++ LCK    D+A+  F  +   G  P++  ++ L+ GLC   +   A 
Sbjct: 373 LSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAE 432

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ D G   + + + T+M    R  +      ++  M R G   D   Y T++   
Sbjct: 433 ELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGH 492

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              GR+ EA   ++ +V+ G++ D V+YNTL++ YCK  +++ AY L  EM  +G   D 
Sbjct: 493 CLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDV 552

Query: 186 YTHTILIDGLCKAGNIKGAR-LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            T+  ++ GL + G    A+ L+L  +N      N+  YN I++ L K+  +D A  +F 
Sbjct: 553 VTYNTILHGLFQTGRFSEAKELYLSMINS-RTQMNIYTYNIIINGLCKNNFVDEAFKMFH 611

Query: 245 SM---------------------------------------EVKDSFTYSSMVHNLCKAK 265
           S+                                        V D  TY  +  NL K  
Sbjct: 612 SLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEG 671

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            L    +L  +  ++G         A+V  L H G    A    SK+
Sbjct: 672 SLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKL 718



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 2/217 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N +L+G CK R  D+A  +FR +   G  P++VTYN ++ GL + GR   A+
Sbjct: 513 LKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAK 572

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + +S    N  TY  I+    +N       ++  ++  K    D F    +I A 
Sbjct: 573 ELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGAL 632

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K GR ++A D    +   G+  D+ +Y  +     KEG LE    L   ME+ G   + 
Sbjct: 633 LKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNS 692

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
                L+  L   G+I  A  +L  +++  F  +LEA
Sbjct: 693 RMLNALVRWLLHRGDINRAGAYLSKLDEKNF--SLEA 727



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 121/273 (44%), Gaps = 17/273 (6%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-------GHAPN 79
           ++AL++F  +  H     +  +N L+  + +A R  +A  ++  L +          AP+
Sbjct: 33  NDALKLFDEMLTHARPASVRAFNQLLTAVSRA-RCSSASELVVSLFNRMIRECSIKVAPS 91

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATD-Y 137
           + TYT ++ C  R  + K G      + + G+   D   +  ++       R+ EATD  
Sbjct: 92  SFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDIL 151

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---FECDKYTHTILIDG 194
           + +M   G   D+ SY+ L+  +C E + E A  LL  M   G      +  T+T +IDG
Sbjct: 152 LRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDG 211

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KD 250
           LCKA  +  A+   ++M   G   N   Y C++      GK    + + + M       D
Sbjct: 212 LCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPD 271

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            + Y+ ++  LCK  R   A  +  S ++ G++
Sbjct: 272 CYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIK 304


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 139/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 265 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 325 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +    KLL    + G
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGXKLLKEMQRDG 417



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 127/256 (49%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 232

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A   +++M   G++ D ++Y TLI+  CKEG L++A+     M ++    D+
Sbjct: 293 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKE 412

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 413 MQ-RDGHVPSVVTYNV 427



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K    ++  M  KG   D   Y T
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 322

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG +L L+ M + G   ++  YN +++
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGXKL-LKEMQRDGHVPSVVTYNVLMN 430



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 101/194 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +      P+L+TYN LI GLCK G 
Sbjct: 238 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 297

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+ ITYTT++  C +        E    M ++    D   Y  
Sbjct: 298 LKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTA 357

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+G +     LL EM++ G
Sbjct: 358 LISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDG 417

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 418 HVPSVVTYNVLMNG 431



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWG 172

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 232

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 292

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 293 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL-D 351

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 352 EVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 141/301 (46%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F+ ++    ++ +  +A+  +R  ++H F     T   +++ L K    +      +E+
Sbjct: 74  VFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEI 133

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G+  +   +  +M    ++   +J   +  A+ + G       Y T++  ++++G L
Sbjct: 134 LECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 193

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            E       M+  GVQ D+ +Y+ LIN  CKE K++ A  L DEM  +G   +  T T L
Sbjct: 194 DEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 253

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           IDG CK G +  A    + M       +L  YN ++  L K G +  A ++ + M VK  
Sbjct: 254 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGL 313

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TY++++   CK   L SA +     ++  +R+ + A  A++ GL   G   +A+K
Sbjct: 314 KPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEK 373

Query: 308 I 308
           +
Sbjct: 374 M 374


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 124/256 (48%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDAN 232

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+      PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 233 KLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G+Q D ++Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 293 CKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 412

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 413 MQ-RDGHVPSVVTYNV 427



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 138/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     ++   M  K    +G  + T+I    K GR+ 
Sbjct: 205 ASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVD 264

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A  L+DEM  +G + DK T+T LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLI 324

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    + G
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A ++F  +     VP  VT+  LI G CK GR
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGR 262

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++      P+ ITY T++    +    K   +++  M  KG   D   Y T
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTT 322

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKL-LKEMQRDGHVPSVVTYNVLMN 430



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 102/194 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +     +P+L+TYN LI GLCK G 
Sbjct: 238 MLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 297

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+ ITYTT++  C +        E    M ++    D   Y  
Sbjct: 298 LKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTA 357

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+G +     LL EM++ G
Sbjct: 358 LISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 418 HVPSVVTYNVLMNG 431



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 130/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDAN 232

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              ++M+   +  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 233 KLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 293 CKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-D 351

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P   TFN  ++ LCK+  + +A  +F+ +   G +P+LV+Y+IL+ G    GR
Sbjct: 360 MTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGR 419

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 +   + D G   N   +  ++    +       + + + M+ +G   D   Y T
Sbjct: 420 FADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYST 479

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+AF ++GRL +A +   QM++ G++ + V Y++LI+ +C  G L  A  L+ EM  +G
Sbjct: 480 LISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKG 539

Query: 181 FECDKYTH-TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                    + +I  LC  G +  A      +  IG    +  +N ++D     GK++ A
Sbjct: 540 IPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA 599

Query: 240 INVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             V ++M       D  TY+++V   CK+ ++     L    L   V+        V+DG
Sbjct: 600 FGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDG 659

Query: 296 LRHSGCRREAKKI 308
           L H+G    AKK+
Sbjct: 660 LFHAGRTSAAKKM 672



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 7/278 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA-RWILKE 70
           T+ I+++  C+ R  D     F  L + G     +  N  +K LC A R   A   +L  
Sbjct: 158 TYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHR 217

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTVIAAFVKI 128
           + D G  PNAI+Y T++K    + + +  L+++  M ++G   + D   + TVI  F K 
Sbjct: 218 MSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQ 277

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           G + +A + + +MV  GV+ D+V+YN++++  CK   ++ A L+L +M  +G E D  T+
Sbjct: 278 GEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTY 337

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           T +I G   +G+ K +      M   G    +  +N  +  L K G+   A  +F+ M  
Sbjct: 338 TAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTT 397

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           K    D  +YS ++H      R    + L  S    G+
Sbjct: 398 KGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGI 435



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 141/312 (45%), Gaps = 6/312 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTA 64
            P   ++N ++  LC +  +  AL M + + K G    P++V++N +I G  K G +  A
Sbjct: 224 VPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKA 283

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             ++ E+   G  P+ +TY +I+    + R       +L  M  KG   DG  Y  +I  
Sbjct: 284 CNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHG 343

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           +   G  KE+     +M + G+   IV++N+ ++  CK G+ + A  +   M  +G   D
Sbjct: 344 YSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPD 403

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +++IL+ G    G           M   G  +N   +N ++    K G +D A+ VF 
Sbjct: 404 LVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFT 463

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+ +    D  TYS+++   C+  RL  A +     +  G+        +++ G    G
Sbjct: 464 EMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHG 523

Query: 301 CRREAKKIQSKI 312
              +AK++ S++
Sbjct: 524 DLVKAKELVSEM 535



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 140/332 (42%), Gaps = 40/332 (12%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G  +P   +FN +++G  K      A  +   + + G  P++VTYN ++  LCKA  +  
Sbjct: 258 GRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDK 317

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+++ D G  P+ +TYT I+     +  +K   ++   M  KG       + + ++
Sbjct: 318 AELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMS 377

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSY------------------------------ 153
           +  K GR K+A +  + M T G   D+VSY                              
Sbjct: 378 SLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVA 437

Query: 154 -----NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
                N LI+ + K G ++ A L+  EM+ QG   D  T++ LI   C+ G +  A    
Sbjct: 438 NCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKF 497

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCK 263
             M  IG + N   Y+ ++      G +  A  +   M  K     +   +SS++H+LC 
Sbjct: 498 SQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCN 557

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             R+  A  +    +  G R       +++DG
Sbjct: 558 EGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDG 589



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 141/344 (40%), Gaps = 75/344 (21%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++   K    D A+ +F  +Q  G  P++VTY+ LI   C+ GRL  A     ++ 
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-------------------- 112
             G  PN + Y +++     +       E++S M  KG                      
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRV 561

Query: 113 ---FDGFG-------------YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
               D F              + ++I  +  +G++++A   ++ MV+ G++ D+V+YNTL
Sbjct: 562 MDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTL 621

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           ++ YCK GK++   +L  EM  +  +    T++I++DGL  AG    A+     M   G 
Sbjct: 622 VSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGT 681

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESM--------------------------EVKD 250
             +++ Y  ++  L ++   D AI +F  +                          E  D
Sbjct: 682 AVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEAND 741

Query: 251 SF-------------TYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            F             TY  M+HNL K   +  A  +  S  KSG
Sbjct: 742 LFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSG 785



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 4/223 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++G CK+   D+ L +FR +      P  VTY+I++ GL  AGR
Sbjct: 606 MVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGR 665

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +  E+ DSG A +  TY  ++K   RN      + +   +      FD     T
Sbjct: 666 TSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNT 725

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI A  K+ R +EA D    + T G+  ++ +Y  +I+   KEG +E A  +   MEK G
Sbjct: 726 VINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSG 785

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEA 222
                     +I  L + G+I  A     YM+K+ G   +LEA
Sbjct: 786 CAPSSRLLNDIIRMLLQKGDIVKAGY---YMSKVDGTIISLEA 825



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 101/240 (42%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ +++ LC      +A  +F  +   G  P +VT+N LI G C  G++  A  +
Sbjct: 543 PNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGV 602

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +   G  P+ +TY T++    ++ K   GL +   M  K        Y  V+     
Sbjct: 603 LDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFH 662

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR   A     +M+  G  +DI +Y  L+   C+    + A  L  ++     + D   
Sbjct: 663 AGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITI 722

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              +I+ L K    + A      ++  G   N+  Y  ++  L K+G ++ A  +F SME
Sbjct: 723 LNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSME 782



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 95/229 (41%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN +++G C     + A  +   +   G  P++VTYN L+ G CK+G++     +
Sbjct: 578 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLIL 637

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            +E+      P  +TY+ ++   F   +     ++   M   G   D   Y  ++    +
Sbjct: 638 FREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 697

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
                EA     ++     + DI   NT+IN   K  + E A  L   +   G   +  T
Sbjct: 698 NDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVST 757

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           + ++I  L K G+++ A      M K G   +    N I+  L + G I
Sbjct: 758 YGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI 806



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 50/304 (16%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-----------LRTARWILKELGDS 74
           TD+A  +F  L + G        N  +  L +A             L     I +E    
Sbjct: 90  TDDAHHLFDELLRQGTPVHNPALNGFLAALARAPDSVSCSNGPALVLALFNRICREEAGP 149

Query: 75  GHAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
             AP ++ TY  +M CC R R+  LG    + + R G         T +       R  E
Sbjct: 150 RVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDE 209

Query: 134 ATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           A D +   ++D G   + +SYNT+I   C + + + A  ++  M K+G  C         
Sbjct: 210 AVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSP------- 262

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249
                                     ++ ++N ++    K G++  A N+   M  K   
Sbjct: 263 --------------------------DVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVE 296

Query: 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            D  TY+S+V  LCKA+ +  A  +L   +  GV        A++ G   SG  +E+ K+
Sbjct: 297 PDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKM 356

Query: 309 QSKI 312
             K+
Sbjct: 357 FRKM 360



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 70/154 (45%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+ I+L GLC+N  TD A+ +F  L       ++   N +I  L K  R   A  +   +
Sbjct: 687 TYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAI 746

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG  PN  TY  ++    +    +    + S+M++ G          +I   ++ G +
Sbjct: 747 STSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI 806

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
            +A  YM ++    + L+  + + L++L+  +GK
Sbjct: 807 VKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGK 840


>gi|356551785|ref|XP_003544254.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g09900-like [Glycine max]
          Length = 603

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 24/318 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+N ++ G+C     D  +R  + L  +G+ P++++Y I++  L   GR
Sbjct: 286 MVSKECKPNVVTYNALIKGICNEGRLDEVIRFLKNLPSYGYQPDVISYTIVLHSLSSGGR 345

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGY 118
              A  +L  +   G + N +T+ T++   F  +K  LG    +L  + +   T +   Y
Sbjct: 346 WTDAMKLLASMLCKGCSLNVVTFNTLIN--FLCQKGLLGKAFNVLEMIXKHVCTPNSISY 403

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
              I  F       E + Y+E MV+ G   DIV+YN L+   CK+ K++ A  +L ++  
Sbjct: 404 NPSIGGFCN-----EKSXYLEIMVSRGCYPDIVTYNILLAALCKDRKVDDAVEILKQLSF 458

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
           +G + D  T++I+IDGL K G    A   LE     G   NL  +  +V  + + GK+  
Sbjct: 459 KGLKPDVITYSIIIDGLLKVGKTDLALELLEEACTKGLKPNLITFTSVVGGISRKGKVHE 518

Query: 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           AI +F  +E      ++F Y+ ++  LCK ++              G +  ++    +V 
Sbjct: 519 AIKIFHFLEGLGIRPNAFAYNLIIMGLCKTQQ-----------TSRGCKPTEATYNILVK 567

Query: 295 GLRHSGCRREAKKIQSKI 312
           G+   G  +EA K+ S++
Sbjct: 568 GITSEGXPKEASKLWSEL 585



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 139/311 (44%), Gaps = 11/311 (3%)

Query: 3   CGDLTPCTATFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELVTYNILIKGLCKAGRL 61
           C  ++P    ++ +L  LC        + +  R LQ   + P++VTY  LI   CK  R+
Sbjct: 218 CMSVSPNGINYDTILRSLCDRCKLKQGMEVLDRQLQIKCY-PDVVTYTELIDAACKDSRV 276

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A  +L E+      PN +TY  ++K      +    +  L  +   GY  D   Y  V
Sbjct: 277 GQAMKLLIEMVSKECKPNVVTYNALIKGICNEGRLDEVIRFLKNLPSYGYQPDVISYTIV 336

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           + +    GR  +A   +  M+  G  L++V++NTLIN  C++G L  A+ +L+ + K   
Sbjct: 337 LHSLSSGGRWTDAMKLLASMLCKGCSLNVVTFNTLINFLCQKGLLGKAFNVLEMIXKHVC 396

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             +  ++   I G C   +      +LE M   G   ++  YN ++  L KD K+D A+ 
Sbjct: 397 TPNSISYNPSIGGFCNEKS-----XYLEIMVSRGCYPDIVTYNILLAALCKDRKVDDAVE 451

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           + + +  K    D  TYS ++  L K  +   A +LL      G++       +VV G+ 
Sbjct: 452 ILKQLSFKGLKPDVITYSIIIDGLLKVGKTDLALELLEEACTKGLKPNLITFTSVVGGIS 511

Query: 298 HSGCRREAKKI 308
             G   EA KI
Sbjct: 512 RKGKVHEAIKI 522



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 125/275 (45%), Gaps = 16/275 (5%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY---------NILIKG 54
           G++ PC      +++  CK   T NA R+   L++ G V ++  Y         N+LI G
Sbjct: 143 GNIMPCVIACTALISEFCKIGRTKNATRIMGILEESGAVIDITIYNFFCLPKKNNVLIGG 202

Query: 55  LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
            C +G +  A  +L  +  S   PN I Y TI++      K K G+E+L    +     D
Sbjct: 203 YCXSGEVEEALRVLDCMSVS---PNGINYDTILRSLCDRCKLKQGMEVLDRQLQIKCYPD 259

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
              Y  +I A  K  R+ +A   + +MV+   + ++V+YN LI   C EG+L+     L 
Sbjct: 260 VVTYTELIDAACKDSRVGQAMKLLIEMVSKECKPNVVTYNALIKGICNEGRLDEVIRFLK 319

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            +   G++ D  ++TI++  L   G    A   L  M   G   N+  +N +++ L + G
Sbjct: 320 NLPSYGYQPDVISYTIVLHSLSSGGRWTDAMKLLASMLCKGCSLNVVTFNTLINFLCQKG 379

Query: 235 KIDHAINVFESME----VKDSFTYSSMVHNLCKAK 265
            +  A NV E +       +S +Y+  +   C  K
Sbjct: 380 LLGKAFNVLEMIXKHVCTPNSISYNPSIGGFCNEK 414



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 11/173 (6%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+NI+L  LCK+R  D+A+ + + L   G  P+++TY+I+I GL K G+   A  +
Sbjct: 428 PDIVTYNILLAALCKDRKVDDAVEILKQLSFKGLKPDVITYSIIIDGLLKVGKTDLALEL 487

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E    G  PN IT+T+++    R  K    ++I   ++  G   + F Y  +I    K
Sbjct: 488 LEEACTKGLKPNLITFTSVVGGISRKGKVHEAIKIFHFLEGLGIRPNAFAYNLIIMGLCK 547

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                       Q  + G +    +YN L+     EG  + A  L  E+  +G
Sbjct: 548 -----------TQQTSRGCKPTEATYNILVKGITSEGXPKEASKLWSELYSKG 589


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 12/272 (4%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P    +N ++ G C     D AL+    + + G    + TYN+L+  L   GR   
Sbjct: 213 GEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASD 272

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+E+  +G +P+  TY  ++    +    K  LE+   M RKG       Y ++I 
Sbjct: 273 AYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIY 332

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           AF + G+++E     +  V  G++ D+V YN LIN +C  G +E A+ ++ EMEK+    
Sbjct: 333 AFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPP 392

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+  LI G C  G +  AR  ++ M K G   +L         L K+G+ D A N+ 
Sbjct: 393 DDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLG--------LCKNGQGDDAENLM 444

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSAS 271
           + M  K    D  TY S++  L       SA+
Sbjct: 445 KEMVGKGITPDDSTYISLIEGLTTVDEQMSAA 476



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 141/316 (44%), Gaps = 45/316 (14%)

Query: 9   CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           CT TFNIML  LC       AL + R + +    P  VTYN +I G C  GR++ A  ++
Sbjct: 115 CTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEVM 170

Query: 69  KELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFV 126
           +E+ + G  AP+  TY T++    +  + +   ++   M  +G        Y  +I  + 
Sbjct: 171 REMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYC 230

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G+L  A  Y E MV  GV + + +YN L++    +G+   AY +L+EM++ G   D +
Sbjct: 231 DRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVF 290

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV------------DRLGK-- 232
           T+ ILI+G CK GN K A    E M++ G  +    Y  ++            DRL K  
Sbjct: 291 TYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVA 350

Query: 233 ---------------------DGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267
                                 G ++ A  +   ME K    D  TY++++   C   RL
Sbjct: 351 VKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRL 410

Query: 268 PSASKLLLSCLKSGVR 283
             A  L+    K G++
Sbjct: 411 DEARGLIDEMTKRGIQ 426


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 156/332 (46%), Gaps = 46/332 (13%)

Query: 12  TFNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK- 69
            F  +L GLC ++ T +A+ +  R + + G +P + +YNIL+KGLC   R + A  +L+ 
Sbjct: 128 AFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQM 187

Query: 70  ------------------------------------ELGDSGHAPNAITYTTIMKCCFRN 93
                                               E+ D G  PN +TY++I+    + 
Sbjct: 188 MPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKA 247

Query: 94  RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153
           +     +E+L++M + G   +   Y +++  +   G+ KEA  ++++M +DGV+ D+V+Y
Sbjct: 248 QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTY 307

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
           N+L++  CK G+   A  + D M K+G + +  T+  L+ G    G +      L+ M +
Sbjct: 308 NSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 367

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G   N   ++ ++    K GK+D A+ VF  M  +    D+ TY +++  LCK+ R+  
Sbjct: 368 NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVED 427

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           A +     +   +    S    V + L HS C
Sbjct: 428 AMRYFEQMIDERL----SPGNIVYNSLIHSLC 455



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 126/278 (45%), Gaps = 4/278 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           GD  P   ++  ++NG  K    D A   +  +   G +P +VTY+ +I  LCKA  +  
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L  +  +G  PN  TY +I+     + + K  +  L  M   G   D   Y +++ 
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMD 312

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR  EA    + M   G++ +I +Y TL+  Y  +G L   + LLD M + G   
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           + Y  +ILI    K G +  A L    M + G + +   Y  ++  L K G+++ A+  F
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSC 277
           E M        +  Y+S++H+LC   +   A    L C
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLKC 470



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 115/248 (46%), Gaps = 7/248 (2%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P L TY ILI   C AGRL      L  +   G   +AI +T ++K    +++    ++I
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 103 -LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINL 159
            L  M + G   + F Y  ++       R +EA + ++ M  DG     D+VSY T+IN 
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           + KEG L+ AY    EM  +G   +  T++ +I  LCKA  +  A   L  M K G   N
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLL 275
              YN IV      G+   AI   + M       D  TY+S++  LCK  R   A K+  
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 276 SCLKSGVR 283
           S  K G++
Sbjct: 329 SMTKRGLK 336



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 5/246 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++TP   T+ I++   C     D        + K GF  + + +  L+KGLC   R   A
Sbjct: 86  EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145

Query: 65  -RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKG--YTFDGFGYCT 120
              +L+ +   G  PN  +Y  ++K  C  NR  +  LE+L  M   G     D   Y T
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE-ALELLQMMPDDGGDCPPDVVSYTT 204

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K G L +A     +M+  G+  ++V+Y+++I   CK   ++ A  +L  M K G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+  ++ G C +G  K A   L+ M+  G + ++  YN ++D L K+G+   A 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 241 NVFESM 246
            +F+SM
Sbjct: 325 KMFDSM 330



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 34/231 (14%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD- 136
           PN  TY  ++  C    +  LG   L  + +KG+  D   +  ++       R  +A D 
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDG 194
            + +M   G   ++ SYN L+   C E + + A  LL  M   G +C  D  ++T +I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTY 254
             K G++               D     Y+ ++DR    G + + +            TY
Sbjct: 209 FFKEGDL---------------DKAYGTYHEMLDR----GILPNVV------------TY 237

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           SS++  LCKA+ +  A ++L S +K+GV        ++V G   SG  +EA
Sbjct: 238 SSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 145/314 (46%), Gaps = 43/314 (13%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T NIM++ LCK +  + A  MF    + G  P  VTY  LI GL K G +  A 
Sbjct: 422 LFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAY 481

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD----------- 114
            + + + D+GH  N + YT++++  F + + + G +I   M R+G   D           
Sbjct: 482 RLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCV 541

Query: 115 -----------------GFG-------YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
                            G+G       Y  +I    K G+ +E +     M   G  LD 
Sbjct: 542 FKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDA 601

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            +YN +++ +CK GKL+ AY +L+EM+ +       T+  +IDGL K   +  A +  E 
Sbjct: 602 RAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEE 661

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 266
               G + N+  Y+ ++D  GK G+ID A  + E M  K    + +T++S++  L KA+ 
Sbjct: 662 AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEE 721

Query: 267 LPSASKLLLSCLKS 280
           +  A    L C +S
Sbjct: 722 INEA----LICFQS 731



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 140/305 (45%), Gaps = 4/305 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P ++T+NI+++ LC     + A  +   ++  G  P L+T NI++  LCKA +   A
Sbjct: 386 DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPA 445

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             + +     G  PN++TY +++    +         +   M   G+  +   Y ++I  
Sbjct: 446 YEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRN 505

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F   GR ++     ++M   G Q D+   NT ++   K G +E    + ++++  GF  D
Sbjct: 506 FFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPD 565

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             +++ILI GL KAG  +        M + GF  +  AYN +VD   K GK+D A  V E
Sbjct: 566 VRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLE 625

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M+VK       TY S++  L K  RL  A  L       G+ +      +++DG    G
Sbjct: 626 EMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVG 685

Query: 301 CRREA 305
              EA
Sbjct: 686 RIDEA 690



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 144/314 (45%), Gaps = 39/314 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+  +++GL K    D+A R+F  +   G     V Y  LI+     GR      I
Sbjct: 459 PNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKI 518

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRN----------------------RKYKL---GL-- 100
            KE+   G  P+     T M C F+                       R Y +   GL  
Sbjct: 519 FKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTK 578

Query: 101 --------EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
                    I  AMK++G+  D   Y  V+  F K G+L +A + +E+M    V   + +
Sbjct: 579 AGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVAT 638

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           Y ++I+   K  +L+ AY+L +E + +G E +   ++ LIDG  K G I  A L LE M 
Sbjct: 639 YGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMM 698

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM-EVK---DSFTYSSMVHNLCKAKRLP 268
           K G   N+  +N ++D L K  +I+ A+  F+SM E+K   +++TYS +++ LC+ ++  
Sbjct: 699 KKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYN 758

Query: 269 SASKLLLSCLKSGV 282
            A        K G+
Sbjct: 759 KAFVFWQEMQKQGL 772



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 5/260 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +N+ ++   K    D A + F  L+  G  P+ V+Y  +I  LCKAGRL  A 
Sbjct: 248 LEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAE 307

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++      P A  Y T++       +++   ++L  +K +G       + +++   
Sbjct: 308 ELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCL 367

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ EA    E M  D  + +  +YN +I++ C  GK+E AY++ DEME  G   + 
Sbjct: 368 GKKRKVDEALTLFEAMKKDA-EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNL 426

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T  I++D LCKA   + A    E  ++ G + N   Y  ++D LGK G +D A  +FE+
Sbjct: 427 LTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFEN 486

Query: 246 M----EVKDSFTYSSMVHNL 261
           M       +   Y+S++ N 
Sbjct: 487 MLDTGHNANPVVYTSLIRNF 506



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 138/312 (44%), Gaps = 38/312 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  + + +++  + + R  + AL + R +Q+ G+   +  +  L++ L + GR+  A  +
Sbjct: 180 PAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALAL 239

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+  S   P+ + Y   + C  +     +  +    +K +G   D   Y ++I    K
Sbjct: 240 VDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCK 299

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG------- 180
            GRL EA +   QM T+       +YNT+I  Y   G+ E AY LLD+++++G       
Sbjct: 300 AGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVS 359

Query: 181 ---------------------------FECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
                                       E +  T+ I+ID LC AG ++ A +  + M  
Sbjct: 360 FNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEH 419

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G   NL   N +VDRL K  K + A  +FE+   +    +S TY S++  L K   +  
Sbjct: 420 AGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDD 479

Query: 270 ASKLLLSCLKSG 281
           A +L  + L +G
Sbjct: 480 AYRLFENMLDTG 491



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 152/352 (43%), Gaps = 40/352 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++  M+  LCK      A  +F  ++    VP    YN +I G   AG+   A 
Sbjct: 283 LKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAY 342

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L +L + G  P+ +++ +I+ C  + RK    L +  AMK+     +   Y  +I   
Sbjct: 343 KLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEP-NSSTYNIIIDML 401

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G+++EA    ++M   G+  ++++ N +++  CK  K E AY + +   ++G   + 
Sbjct: 402 CMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNS 461

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY---------------------- 223
            T+  LIDGL K GN+  A    E M   G ++N   Y                      
Sbjct: 462 VTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKE 521

Query: 224 -------------NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKR 266
                        N  +D + K G ++    +FE ++    + D  +YS ++H L KA +
Sbjct: 522 MNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ 581

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
               S +  +  + G  +   A  AVVDG   SG   +A ++  ++++ ++ 
Sbjct: 582 ARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVP 633



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 129/258 (50%), Gaps = 3/258 (1%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +++ L + R  D+A R+   +++  F P    Y +LI  + +A +   A  +L+++ + G
Sbjct: 153 LVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVG 212

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           +      +TT+++   R  + +  L ++  +K      D   Y   I  F K G +  A 
Sbjct: 213 YEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAW 272

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
            +  ++ + G++ D VSY ++I + CK G+L  A  L  +ME +      Y +  +I G 
Sbjct: 273 KFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGY 332

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSF 252
             AG  + A   L+ + + G   ++ ++N I+  LGK  K+D A+ +FE+M+     +S 
Sbjct: 333 GSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSS 392

Query: 253 TYSSMVHNLCKAKRLPSA 270
           TY+ ++  LC A ++  A
Sbjct: 393 TYNIIIDMLCMAGKVEEA 410



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 1/263 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P  AT+  +++GL K    D A  +F   +  G    ++ Y+ LI G  K GR+  A 
Sbjct: 632 VPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAY 691

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL+E+   G  PN  T+ ++M    +  +    L    +MK    + + + Y  +I   
Sbjct: 692 LILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGL 751

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++ +  +A  + ++M   G+  ++V+Y T+I    K G +  A  L +  +  G   D 
Sbjct: 752 CRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDA 811

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV-FE 244
            +   LI+G+  A     A    E     G   N++A   ++D L K   ++ A  V F 
Sbjct: 812 ASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKAECLEQAAVVGFG 871

Query: 245 SMEVKDSFTYSSMVHNLCKAKRL 267
              V+  F ++  +  L  A +L
Sbjct: 872 ENTVRHFFQWTEGLDLLLSAGQL 894



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+E+   G+         ++    R R+      +++AM+R  +      Y  +I A  
Sbjct: 134 VLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMA 193

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  + + A + + QM   G ++ +  + TL+    +EG++E A  L+DE++    E D  
Sbjct: 194 EARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIV 253

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
            + + ID   KAGN+  A      +   G   +  +Y  ++  L K G++  A  +F  M
Sbjct: 254 LYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQM 313

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           E    V  ++ Y++M+     A +  +A KLL
Sbjct: 314 ETERAVPCAYAYNTMIMGYGSAGQFENAYKLL 345


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 1/245 (0%)

Query: 6   LTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           L P ++ +FN++++G C+ R  DNA +    +++ GF P++ +Y   I+  C     R  
Sbjct: 258 LIPLSSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKV 317

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L+E+ ++G  PNA+TYTT+M    +  +    LE+   MK  G   D   Y  +I  
Sbjct: 318 DQVLEEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFI 377

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GRLK+A D  E M   GV  D+V+YNT+I+  C   + E A  LL EME    + +
Sbjct: 378 LGKAGRLKDACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPN 437

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  L+   CK   +K  +  L++M K     +L  Y+ +V+ L K GK+  A +  E
Sbjct: 438 VGTYHPLLKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLE 497

Query: 245 SMEVK 249
            M +K
Sbjct: 498 EMVLK 502



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 131/278 (47%), Gaps = 28/278 (10%)

Query: 23  NRYTDN---ALRMFRGLQKH-GF--VPELVTYNILIKGLCKAGRLRTARWILKELG--DS 74
           NR++++   AL  F+  +   G+   PEL    + I G CK+        +++E+   + 
Sbjct: 132 NRFSNDWVPALGFFKWAKSQTGYRHSPELCNLMVDILGKCKS--FDPMSDLVEEMAKLEQ 189

Query: 75  GHAPNAITYTTIMKCCFR---NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           G+    +T  T+ K   R    RK++  +E    M + G   D      +I A VK    
Sbjct: 190 GY----VTLETMAKVIRRLAKARKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVK---- 241

Query: 132 KEATDYMEQMVTDG---VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
            ++ ++  ++V +    + L   S+N L++ +C+  K + A   +++M++ GFE D +++
Sbjct: 242 GDSVEHAHKVVLEFKGLIPLSSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSY 301

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           T  I+  C   + +     LE M + G   N   Y  ++  LGK G++  A+ V+E M+ 
Sbjct: 302 TSFIEAYCHERDFRKVDQVLEEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKC 361

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              V D+  YS M+  L KA RL  A  +     K GV
Sbjct: 362 DGCVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQGV 399



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M C      T  ++ M+  L K     +A  +F  + K G V ++VTYN +I   C   R
Sbjct: 359 MKCDGCVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNTMISTACAHSR 418

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
             TA  +LKE+ D    PN  TY  ++K C + ++ K+   +L  M +   + D   Y  
Sbjct: 419 EETALRLLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSL 478

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDG 145
           ++ A  K G++ +A  ++E+MV  G
Sbjct: 479 LVNALCKTGKVADAYSFLEEMVLKG 503



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 51/101 (50%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N M++  C +   + ALR+ + ++     P + TY+ L+K  CK  R++  +++L  +
Sbjct: 405 TYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKVLKFLLDHM 464

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT 112
             +  +P+  TY+ ++    +  K       L  M  KG+T
Sbjct: 465 FKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGFT 505


>gi|224113637|ref|XP_002316529.1| predicted protein [Populus trichocarpa]
 gi|222859594|gb|EEE97141.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 144/313 (46%), Gaps = 3/313 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M  G + P + T+N +++G CK      A  +   + K    P + TY  +I+G  +AG 
Sbjct: 302 MSAGSIKPNSVTYNSLIDGFCKIGGITVAEELRNEMMKIDIEPNVRTYATMIEGYSRAGC 361

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  +  E+ + G  PN++ Y +IM   +          + + M  K    D F    
Sbjct: 362 LEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDVDGASLVFTDMSDKQIPLDKFTCSI 421

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +     + G +  A  ++ Q++ + +  D  S+N LIN  CK     AA  LL  M  +G
Sbjct: 422 LTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARMYVRG 481

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA- 239
              D  T   LIDG CK GNI+ A    + M K     NL  YN I++ L KDG +D A 
Sbjct: 482 LVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNLLVYNSIINGLCKDGLVDVAR 541

Query: 240 --INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
             ++V + M + D+ TY+++++      +   A KL      +G+    +    V+  L 
Sbjct: 542 SLVDVLQRMGLVDTITYNTLINGYFNCGKFDKAFKLSTLMQNAGILASSATYNTVIKFLC 601

Query: 298 HSGCRREAKKIQS 310
             GC +EAK++ +
Sbjct: 602 KFGCVQEAKELMT 614



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 162/348 (46%), Gaps = 43/348 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK-- 69
           TFN++++ LCK+     AL +F  + K G  P +VT+N+++ G CK G +  A  +++  
Sbjct: 240 TFNVVVHALCKDCKLQEALSVFYRILKSGIWPNVVTFNMMVDGACKMGDMDLALKLVRKM 299

Query: 70  ELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           E+  +G   PN++TY +++    +     +  E+ + M +     +   Y T+I  + + 
Sbjct: 300 EIMSAGSIKPNSVTYNSLIDGFCKIGGITVAEELRNEMMKIDIEPNVRTYATMIEGYSRA 359

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT- 187
           G L+EA    ++MV  G+  + V YN++++    EG ++ A L+  +M  +    DK+T 
Sbjct: 360 GCLEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDVDGASLVFTDMSDKQIPLDKFTC 419

Query: 188 ----------------------------------HTILIDGLCKAGNIKGARLHLEYMNK 213
                                             H ILI+ LCK+ N   AR  L  M  
Sbjct: 420 SILTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARMYV 479

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPS 269
            G   ++  +  ++D   K+G I+ A+ V++ M    E  +   Y+S+++ LCK   L  
Sbjct: 480 RGLVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNLLVYNSIINGLCK-DGLVD 538

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            ++ L+  L+    +       +++G  + G   +A K+ + ++ A I
Sbjct: 539 VARSLVDVLQRMGLVDTITYNTLINGYFNCGKFDKAFKLSTLMQNAGI 586



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 122/262 (46%), Gaps = 5/262 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T +I+  GLC+N Y   AL+    + ++  + +  ++NILI  LCK+     AR +L  +
Sbjct: 418 TCSILTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARM 477

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ +T+ T++    +    +  +++   M +     +   Y ++I    K G +
Sbjct: 478 YVRGLVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNLLVYNSIINGLCKDGLV 537

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A   ++ +   G+ +D ++YNTLIN Y   GK + A+ L   M+  G      T+  +
Sbjct: 538 DVARSLVDVLQRMGL-VDTITYNTLINGYFNCGKFDKAFKLSTLMQNAGILASSATYNTV 596

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I  LCK G ++ A+  +  M   G   +   Y  +V  + K+   +  I + + M +K  
Sbjct: 597 IKFLCKFGCVQEAKELMTMMVLWGVLPDNITYRTLVININKNCSAEEVIELHDYMVLKGV 656

Query: 250 --DSFTYSSMVHNLCKAKRLPS 269
             D  TY ++V  L + +   S
Sbjct: 657 VPDKLTYENIVSPLLQEESATS 678



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 147/312 (47%), Gaps = 17/312 (5%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N  L+ L K         +++ +  +G++  + T+N+++  LCK  +L+ A  +   + 
Sbjct: 206 WNNFLSHLIKVNEIHRFWIVYKEMVSYGYMENVNTFNVVVHALCKDCKLQEALSVFYRIL 265

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGL------EILSAMKRKGYTFDGFGYCTVIAAFV 126
            SG  PN +T+  ++    +     L L      EI+SA   K    +   Y ++I  F 
Sbjct: 266 KSGIWPNVVTFNMMVDGACKMGDMDLALKLVRKMEIMSAGSIKP---NSVTYNSLIDGFC 322

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           KIG +  A +   +M+   ++ ++ +Y T+I  Y + G LE A  L DEM ++G   +  
Sbjct: 323 KIGGITVAEELRNEMMKIDIEPNVRTYATMIEGYSRAGCLEEALRLCDEMVERGLLPNSV 382

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC-IVDR-LGKDGKIDHAI---- 240
            +  ++  L   G++ GA L    M+       L+ + C I+ R L ++G I  A+    
Sbjct: 383 VYNSIMHWLYMEGDVDGASLVFTDMSDKQIP--LDKFTCSILTRGLCRNGYITTALKFLN 440

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            V E+  ++D+F+++ +++ LCK+    +A +LL      G+         ++DG    G
Sbjct: 441 QVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARMYVRGLVPDVVTFGTLIDGHCKEG 500

Query: 301 CRREAKKIQSKI 312
               A ++  K+
Sbjct: 501 NIESAVQVYDKM 512



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 122/262 (46%), Gaps = 5/262 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P +  +N +++ L      D A  +F  +       +  T +IL +GLC+ G + TA 
Sbjct: 377 LLPNSVVYNSIMHWLYMEGDVDGASLVFTDMSDKQIPLDKFTCSILTRGLCRNGYITTAL 436

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L ++ ++    +A ++  ++    ++  +    ++L+ M  +G   D   + T+I   
Sbjct: 437 KFLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARMYVRGLVPDVVTFGTLIDGH 496

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G ++ A    ++MV    + +++ YN++IN  CK+G ++ A  L+D +++ G   D 
Sbjct: 497 CKEGNIESAVQVYDKMVKGEEKPNLLVYNSIINGLCKDGLVDVARSLVDVLQRMGL-VDT 555

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+  LI+G    G    A      M   G  ++   YN ++  L K G +  A  +   
Sbjct: 556 ITYNTLINGYFNCGKFDKAFKLSTLMQNAGILASSATYNTVIKFLCKFGCVQEAKELMTM 615

Query: 246 M----EVKDSFTYSSMVHNLCK 263
           M     + D+ TY ++V N+ K
Sbjct: 616 MVLWGVLPDNITYRTLVININK 637



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 1/192 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   TF  +++G CK    ++A++++  + K    P L+ YN +I GLCK G +  AR
Sbjct: 482 LVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNLLVYNSIINGLCKDGLVDVAR 541

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++  L   G   + ITY T++   F   K+    ++ + M+  G       Y TVI   
Sbjct: 542 SLVDVLQRMGLV-DTITYNTLINGYFNCGKFDKAFKLSTLMQNAGILASSATYNTVIKFL 600

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G ++EA + M  MV  GV  D ++Y TL+    K    E    L D M  +G   DK
Sbjct: 601 CKFGCVQEAKELMTMMVLWGVLPDNITYRTLVININKNCSAEEVIELHDYMVLKGVVPDK 660

Query: 186 YTHTILIDGLCK 197
            T+  ++  L +
Sbjct: 661 LTYENIVSPLLQ 672



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 21/224 (9%)

Query: 100 LEILSAMKRKGYTFDGFGYC--------TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
           LE+L A+       + +G C         ++ A  +IG    A + ++++  +G  + I 
Sbjct: 151 LEVLEALN------NSYGICESNHAVFDALVRACTQIGATVGACEVIKKLQIEGCWVTIH 204

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           ++N  ++   K  ++   +++  EM   G+  +  T  +++  LCK   ++ A      +
Sbjct: 205 AWNNFLSHLIKVNEIHRFWIVYKEMVSYGYMENVNTFNVVVHALCKDCKLQEALSVFYRI 264

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-------KDSFTYSSMVHNLCKA 264
            K G   N+  +N +VD   K G +D A+ +   ME+        +S TY+S++   CK 
Sbjct: 265 LKSGIWPNVVTFNMMVDGACKMGDMDLALKLVRKMEIMSAGSIKPNSVTYNSLIDGFCKI 324

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             +  A +L    +K  +         +++G   +GC  EA ++
Sbjct: 325 GGITVAEELRNEMMKIDIEPNVRTYATMIEGYSRAGCLEEALRL 368


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 142/273 (52%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 142 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAML 201

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 202 ASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVD 261

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  ++M++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK+T+T LI
Sbjct: 262 FAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 321

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 322 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLK 381

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    ++G
Sbjct: 382 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNG 414



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 117/242 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +  + D   R+   +   G +P++ TY++LI GLCK  ++  A 
Sbjct: 170 LRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDAN 229

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +    +EI   M  +    D   Y T+I   
Sbjct: 230 ELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGL 289

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D  +Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 290 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 349

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +  LI GLC+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 350 VAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKE 409

Query: 246 ME 247
           M+
Sbjct: 410 MQ 411



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G +P  VT+  LI G CK GR
Sbjct: 200 MLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGR 259

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K +      P+ ITY T++    +    K   +++  M  KG   D F Y T
Sbjct: 260 VDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 319

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 320 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVG 379

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 380 LKPDTGTYTMIINEFCKKGDVWKGSKL-LKEMQRNGHAPSVVTYNVLMN 427



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 101/194 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +     +P+L+TYN LI GLCK G 
Sbjct: 235 MLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGD 294

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+  TYTT++  C +        E    M ++    D   Y  
Sbjct: 295 LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAA 354

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK+G +     LL EM++ G
Sbjct: 355 LISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNG 414

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 415 HAPSVVTYNVLMNG 428



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 110 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 169

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 170 LRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDAN 229

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +   M  Q    D  T+  LI GL
Sbjct: 230 ELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGL 289

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 290 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-D 348

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 349 DVAYAALISGLCQEGRSVDAEKMLREMLSVGLK 381


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 140/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K      +   M  KG   +G  + T+I    K GR+ 
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK+T+T LI
Sbjct: 246 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 305

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 306 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 365

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +V+  CK   +   SKLL    + G
Sbjct: 366 PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDG 398



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 154 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGAN 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 214 GLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 273

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D  +Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 274 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 333

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  IV+   K G +     + + 
Sbjct: 334 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKE 393

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 394 MQ-RDGHAPSVVTYNV 408



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 184 MLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGR 243

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++      P+ ITY T++    +    K   +++  M  KG   D F Y T
Sbjct: 244 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 303

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 304 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 363

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++++  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 364 LKPDTGTYTMIVNEFCKKGDVWKGSKL-LKEMQRDGHAPSVVTYNVLMN 411



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 101/194 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +     +P+L+TYN LI GLCK G 
Sbjct: 219 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 278

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+  TYTT++  C +        E    M ++    D   Y  
Sbjct: 279 LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTA 338

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  ++N +CK+G +     LL EM++ G
Sbjct: 339 LISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDG 398

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 399 HAPSVVTYNVLMNG 412



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 130/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 153

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++  A 
Sbjct: 154 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGAN 213

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 214 GLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 273

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 274 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-D 332

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 333 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 365


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 148/294 (50%), Gaps = 13/294 (4%)

Query: 11  ATFNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           AT  +++  LC K R+ D +   FR + + G  P +V Y   I GLCK   ++ A  +L+
Sbjct: 209 ATCTVVVRSLCEKGRFKDVS-EFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLE 267

Query: 70  ELGDSGHAPNAITYTTIM----KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           E+   G  PN  T+TT++    K  +  R ++L L+++   K   Y  +   Y  +I  +
Sbjct: 268 EMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLI---KSSSYKPNVHTYTVMIGGY 324

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+L  A   + +MV  G++ +  +Y TLI  +CK G  + A+ L+++M+++GF  + 
Sbjct: 325 CREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNI 384

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+  +IDG CK G I+ A   L      G   +   Y  ++    K G I +A+++F+ 
Sbjct: 385 YTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDR 444

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           M       D   Y+S++   C+ +++  + K    CL  G+   K    +++ G
Sbjct: 445 MVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAG 498



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 141/302 (46%), Gaps = 13/302 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTARW 66
           P    +   ++GLCK RY   A  +   +   G  P + T+  LI GLCK G   R  R 
Sbjct: 241 PNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRL 300

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
            LK +  S + PN  TYT ++    R  K      +L  M  +G   +   Y T+I    
Sbjct: 301 FLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHC 360

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G    A + M +M  +G   +I +YN +I+ +CK+GK++ AY +L     QG + DK 
Sbjct: 361 KGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKI 420

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES- 245
           T+TILI   CK G+I  A    + M + G   ++EAY  ++    +  +++ +   F+  
Sbjct: 421 TYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKC 480

Query: 246 -----MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV---RILKSAQKAVVDGLR 297
                +  K   TY+SM+   CK  R   A ++    +++G     IL  +   VV   R
Sbjct: 481 LMIGLLPTKQ--TYTSMIAGYCKVGRSTMALRVFERMVQNGCFADSILMCSNN-VVSATR 537

Query: 298 HS 299
           HS
Sbjct: 538 HS 539



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 3/269 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAG 59
           M+   L P   T   +++GLCK  +T+ A R+F  L K   + P + TY ++I G C+ G
Sbjct: 269 MVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREG 328

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  +L  + + G  PN  TYTT++    +   +    E+++ MK++G+  + + Y 
Sbjct: 329 KLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYN 388

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            VI  F K G+++EA   +    + G++ D ++Y  LI  +CK+G +  A  L D M + 
Sbjct: 389 AVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVEN 448

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   D   +T LI   C+   ++ ++   +    IG     + Y  ++    K G+   A
Sbjct: 449 GCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMA 508

Query: 240 INVFESMEVKDSFTYSSMV--HNLCKAKR 266
           + VFE M     F  S ++  +N+  A R
Sbjct: 509 LRVFERMVQNGCFADSILMCSNNVVSATR 537



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 131/282 (46%), Gaps = 11/282 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   +F  ++   C+    +    +   + ++GF  +  T  ++++ LC+ GR +     
Sbjct: 171 PDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEF 230

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            + + + G  PN + YT  +    + R  K    +L  M  +G   + + + T+I    K
Sbjct: 231 FRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCK 290

Query: 128 IGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           IG  + A   +++ + +   + ++ +Y  +I  YC+EGKL  A +LL  M +QG + +  
Sbjct: 291 IGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTN 350

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           T+T LI G CK G+   A    E MNK+   GF  N+  YN ++D   K GKI  A  V 
Sbjct: 351 TYTTLIGGHCKGGSFDRA---FELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVL 407

Query: 244 ESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
                +    D  TY+ ++   CK   +  A  L    +++G
Sbjct: 408 RMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENG 449



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 142/294 (48%), Gaps = 8/294 (2%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
             A  M   ++ HG    + T N +++   + G    AR +   +  +G  P+  ++  +
Sbjct: 120 PEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRAL 179

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +  C R  K +    +L+AM R G++ D      V+ +  + GR K+ +++  +M+  G 
Sbjct: 180 VVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGT 239

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-R 205
             ++V+Y   I+  CK   ++ A+ +L+EM  +G + + YTHT LIDGLCK G  + A R
Sbjct: 240 PPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFR 299

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVKDSFTYSSMVHNL 261
           L L+ +    +  N+  Y  ++    ++GK+  A    + + E     ++ TY++++   
Sbjct: 300 LFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGH 359

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315
           CK      A +L+    + G         AV+DG    G  +EA K+   +RMA
Sbjct: 360 CKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKV---LRMA 410



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 112/268 (41%), Gaps = 5/268 (1%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           ++    +AGRL  A  ++ E+   G      T   +++       +    ++   M R G
Sbjct: 109 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 168

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              D   +  ++    + G+++E    +  M   G  LD  +   ++   C++G+ +   
Sbjct: 169 VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 228

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
                M + G   +   +T  IDGLCK   +K A   LE M   G   N+  +  ++D L
Sbjct: 229 EFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 288

Query: 231 GKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
            K G  + A  +F  +    S+     TY+ M+   C+  +L  A  LL+  ++ G++  
Sbjct: 289 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 348

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            +    ++ G    G    A ++ +K++
Sbjct: 349 TNTYTTLIGGHCKGGSFDRAFELMNKMK 376



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 59/222 (26%)

Query: 118 YCTVIAAFV--------------------KIGRLKEATDYMEQMVTDGVQL--------- 148
           Y T   AFV                    + GRL EA D + +M + G+ L         
Sbjct: 86  YVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVL 145

Query: 149 --------------------------DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
                                     D  S+  L+ + C+EGK+E    LL  M + GF 
Sbjct: 146 RVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFS 205

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T T+++  LC+ G  K        M ++G   N+  Y   +D L K   +  A +V
Sbjct: 206 LDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHV 265

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
            E M  +    + +T+++++  LCK      A +L L  +KS
Sbjct: 266 LEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKS 307


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 125/246 (50%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G + P  ++FN +++G CK R  + A  M + +++HGF P ++TY  LI+  C     +T
Sbjct: 258 GSVPPDESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQT 317

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
              IL E+   G  PN ITYT +M    +  + +  L+I   ++  G   D   Y ++I 
Sbjct: 318 VYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIY 377

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              + GRL++A   +++M   GV+  + ++NTLI+  C   + E A  +L +ME+Q  + 
Sbjct: 378 ILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKP 437

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+T L+   CK   IK  R  + +M +     +   Y  +V  L ++GK   +    
Sbjct: 438 DIKTYTPLLKLCCKRQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCLFL 497

Query: 244 ESMEVK 249
           E M +K
Sbjct: 498 EEMVLK 503



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 130/325 (40%), Gaps = 39/325 (12%)

Query: 23  NRYTDNALRMFRGLQKHGFVPELVTYNILIK----------------------------- 53
           +R+TD A+  F  + + G V +    N+L+                              
Sbjct: 209 SRWTD-AIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSF 267

Query: 54  -----GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
                G CKA  +  AR ++KE+ + G  P+ ITYT++++     + ++    IL+ M+ 
Sbjct: 268 NTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRS 327

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
           KG   +   Y  V+ A  K GR +EA D  +++  DG   D   YN+LI +  + G+LE 
Sbjct: 328 KGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLED 387

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
           A  ++D+M   G      T   LI   C     + A   L  M +     +++ Y  ++ 
Sbjct: 388 ANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLK 447

Query: 229 RLGKDGKID----HAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
              K   I        ++F      D  TY+ +V  LC+  +   +   L   +  G   
Sbjct: 448 LCCKRQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCLFLEEMVLKGFAP 507

Query: 285 LKSAQKAVVDGLRHSGCRREAKKIQ 309
            K     V + L  +      KKIQ
Sbjct: 508 KKETFDLVAEKLDKANLHSAKKKIQ 532



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 118/256 (46%), Gaps = 6/256 (2%)

Query: 32  MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91
           M+ G Q+ G+     +YN ++  L K  +      ++ ++ + G   +  T T +M+   
Sbjct: 148 MWAGAQE-GYRHSADSYNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLA 206

Query: 92  RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151
              ++   ++  + M + G   D      ++    K   +K A    +++    V  D  
Sbjct: 207 GASRWTDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQEL-RGSVPPDES 265

Query: 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           S+NTL++ +CK   +  A  ++ EME+ GF+    T+T LI+  C   + +     L  M
Sbjct: 266 SFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEM 325

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
              G   N+  Y  ++  LGK G+   A+++F+ +       D+  Y+S+++ L +A RL
Sbjct: 326 RSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRL 385

Query: 268 PSASKLLLSCLKSGVR 283
             A+ ++     +GVR
Sbjct: 386 EDANSVVDKMRMTGVR 401


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P    FNI++N   +    D A+ +F  +Q  G +P+ VT+  +I  LC+ GR
Sbjct: 323 MVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 382

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-C 119
           L  A      + D G  P+   Y  +++ C  + +     E++S M  K     G  Y  
Sbjct: 383 LDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFS 442

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++I    K GR+ E  D M+ MV  G + ++V++N+L+  YC  G +E A+ LLD M   
Sbjct: 443 SIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASI 502

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G E + Y +  L+DG CK G I  A      M   G       YN I+  L +  +   A
Sbjct: 503 GIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAA 562

Query: 240 INVF----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +F    ES       TY  ++  LC+      A+ LL       V+        V+  
Sbjct: 563 KKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISA 622

Query: 296 LRHSGCRREAKKIQSKI 312
           +   G R+EAK++ + I
Sbjct: 623 MLKVGRRQEAKELFAAI 639



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 160/387 (41%), Gaps = 75/387 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++ G         ++R+F+ +   G +P +V  N  I  LC+  R
Sbjct: 218 MVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNR 277

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM-----KCCFRNRKYKLGLE-------------- 101
           ++ A+ I   +   G  PN I+Y+T++     + CF N    + L               
Sbjct: 278 IKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNI 337

Query: 102 ----------------ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                           I   M+ KG   D   + TVI++  +IGRL +A      MV  G
Sbjct: 338 LINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG 397

Query: 146 VQL----------------------DIVS--------------YNTLINLYCKEGKLEAA 169
           V                        +++S              ++++IN   KEG++   
Sbjct: 398 VPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEG 457

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             ++D M + G   +  T   L++G C  GN++ A   L+ M  IG + N   Y  +VD 
Sbjct: 458 KDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDG 517

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K+G+ID A+ VF  M  K     S  Y+ ++H L +A+R  +A K+    ++SG  + 
Sbjct: 518 YCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVS 577

Query: 286 KSAQKAVVDGLRHSGCRREAKKIQSKI 312
                 V+ GL  + C  EA  +  K+
Sbjct: 578 IQTYGVVLGGLCRNNCTDEANMLLEKL 604



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 5/288 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   ++P   T+N +++GLCK +    + R+   +   G  P   TYN LI G   AG 
Sbjct: 183 MIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGM 242

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + +  + KE+  SG  P  +   + +    R+ + K   +I  +M  KG   +   Y T
Sbjct: 243 WKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYST 302

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +   G        +  MV+ G+  +   +N LIN Y + G ++ A L+ ++M+ +G
Sbjct: 303 LLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKG 362

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T   +I  LC+ G +  A     +M  IG   +   Y C++      G++  A 
Sbjct: 363 MIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAK 422

Query: 241 NVFESMEVKDSFT-----YSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            +   M  KD        +SS+++NL K  R+     ++   +++G R
Sbjct: 423 ELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQR 470



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 148/310 (47%), Gaps = 4/310 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+NI+++   +    + AL +F  L + G  P++ +YN LI G  K G +  A  
Sbjct: 119 APTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYE 178

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  ++ +   +P+ +TY +++    + ++      +L  M   G   +   Y ++I  + 
Sbjct: 179 LFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYS 238

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G  KE+    ++M + G+   +V+ N+ I+  C+  +++ A  + D M  +G + +  
Sbjct: 239 TAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNII 298

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +++ L+ G    G        +  M   G   N   +N +++   + G +D A+ +FE M
Sbjct: 299 SYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDM 358

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           +    + D+ T+++++ +LC+  RL  A       +  GV   ++  + ++ G  + G  
Sbjct: 359 QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGEL 418

Query: 303 REAKKIQSKI 312
            +AK++ S++
Sbjct: 419 VKAKELISEM 428



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 6/233 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++G CKN   D+AL +FR +   G  P  V YNI++ GL +A R   A+
Sbjct: 504 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAK 563

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +  E+ +SG   +  TY  ++    RN    +  + LE L AM  K   FD   +  VI
Sbjct: 564 KMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK---FDIITFNIVI 620

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           +A +K+GR +EA +    + T G+   + +YN +I+   KE   E A  L   +EK G  
Sbjct: 621 SAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRA 680

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
            D      ++  L K   +  A  +L  +++          + +     ++GK
Sbjct: 681 PDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREGK 733



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 129/311 (41%), Gaps = 7/311 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    F+ ++N L K         +   + + G  P +VT+N L++G C  G +  A  
Sbjct: 435 PPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 494

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +   G  PN   Y T++    +N +    L +   M  KG       Y  ++    
Sbjct: 495 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLF 554

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  R   A     +M+  G  + I +Y  ++   C+    + A +LL+++     + D  
Sbjct: 555 QARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII 614

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  I+I  + K G  + A+     ++  G    +  YN ++  L K+   + A N+F S+
Sbjct: 615 TFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISV 674

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL--RHSG 300
           E      DS   + +V  L K   +  AS   LS +      L+++  +++  L  R   
Sbjct: 675 EKSGRAPDSRLLNHIVRMLLKKAEVAKASN-YLSIIDENNLTLEASTISLLASLFSREGK 733

Query: 301 CRREAKKIQSK 311
           CR   K + +K
Sbjct: 734 CREHIKLLPAK 744



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 6/202 (2%)

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
           R  RW       +  AP   TY  ++ C  R  + +L L +   + R G   D   Y T+
Sbjct: 106 RMDRWACPHA--AADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTL 163

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F K G + +A +   +M+   V  D+V+YN+LI+  CK  ++  +  +L++M   G 
Sbjct: 164 IDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGI 223

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             +  T+  LI G   AG  K +    + M+  G    +   N  +  L +  +I  A +
Sbjct: 224 RPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKD 283

Query: 242 VFESMEVK----DSFTYSSMVH 259
           +F+SM +K    +  +YS+++H
Sbjct: 284 IFDSMVLKGPKPNIISYSTLLH 305



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 78/165 (47%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI    T    T+ ++L GLC+N  TD A  +   L       +++T+NI+I  + K GR
Sbjct: 569 MIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGR 628

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A+ +   +   G  P   TY  ++    +   Y+    +  ++++ G   D      
Sbjct: 629 RQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNH 688

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           ++   +K   + +A++Y+  +  + + L+  + + L +L+ +EGK
Sbjct: 689 IVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREGK 733


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 12/310 (3%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            T NI L  LCK    +   R  + L   HGF P++VTY+ LIK   K G L  A  +++
Sbjct: 381 VTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMR 440

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+G  G   N IT  TI+    + RK      +L++  ++G+  D   Y T+I  F +  
Sbjct: 441 EMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREE 500

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           ++++A +  ++M    +   + ++N+LI   C  GK E A    DE+ + G   D  T  
Sbjct: 501 KVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFN 560

Query: 190 ILIDGLCKAGNIKGARLHLEYMN---KIGFDSNLEAYNCIVDRLGKDGKIDHAINVF--- 243
            +I G CK G ++ A    E+ N   K  F  +    N +++ L K+G  + A+N F   
Sbjct: 561 SIILGYCKEGRVEKA---FEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTL 617

Query: 244 -ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
            E  EV D+ TY++M+   CK K+L  A  LL    + G+   +    + +  L   G  
Sbjct: 618 IEEREV-DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKL 676

Query: 303 REAKKIQSKI 312
            E  ++  K 
Sbjct: 677 SETDELLKKF 686



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 152/306 (49%), Gaps = 5/306 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P   T+NI++NGLC        L +   ++     P++VTYN LI G  + G    A
Sbjct: 305 NVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEA 364

Query: 65  RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           R +++++ + G   N +T+   +K  C   ++  +  ++   +   G++ D   Y T+I 
Sbjct: 365 RKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIK 424

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A++K+G L  A + M +M   G++++ ++ NT+++  CKE KL+ A+ LL+   K+GF  
Sbjct: 425 AYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIV 484

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D+ T+  LI G  +   ++ A    + M K+     +  +N ++  L   GK + A+  F
Sbjct: 485 DEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKF 544

Query: 244 ----ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
               ES  + D  T++S++   CK  R+  A +     +K   +        +++GL   
Sbjct: 545 DELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKE 604

Query: 300 GCRREA 305
           G   +A
Sbjct: 605 GMTEKA 610



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 141/300 (47%), Gaps = 5/300 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +L  + K     +   +   ++K+G VP  VTYN L+ G CK G L+ A 
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAF 295

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I++ +  +   P+  TY  ++         + GLE++ AMK      D   Y T+I   
Sbjct: 296 QIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC 355

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-EKQGFECD 184
            ++G   EA   MEQM  DGV+ + V++N  +   CKE K EA    + E+ +  GF  D
Sbjct: 356 FELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPD 415

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  LI    K G++ GA   +  M + G   N    N I+D L K+ K+D A N+  
Sbjct: 416 IVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLN 475

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           S      + D  TY +++    + +++  A ++     K  +    S   +++ GL H G
Sbjct: 476 SAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHG 535



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 13/307 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDN-----ALRMFRGLQKHGFVPELVTYNILIKGL 55
           MI   L P   T N +L GL   RY  +     A  +F  + K G    + T+N+L+ G 
Sbjct: 157 MIRLKLKPNLLTCNTLLIGLV--RYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGY 214

Query: 56  CKAGRLRTARWILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           C  G+L  A  +L+ +  +    P+ +TY TI+K   +  +     E+L  MK+ G   +
Sbjct: 215 CLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPN 274

Query: 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
              Y  ++  + K+G LKEA   +E M    V  D+ +YN LIN  C  G +     L+D
Sbjct: 275 RVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMD 334

Query: 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            M+    + D  T+  LIDG  + G    AR  +E M   G  +N   +N  +  L K+ 
Sbjct: 335 AMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEE 394

Query: 235 KIDHAI-NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           K +     V E +++     D  TY +++    K   L  A +++    + G+++     
Sbjct: 395 KREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITL 454

Query: 290 KAVVDGL 296
             ++D L
Sbjct: 455 NTILDAL 461



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 128/268 (47%), Gaps = 10/268 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK---AGRLRTA 64
           P  A F+I L+          AL++F+ + +    P L+T N L+ GL +   +  + +A
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIA 123
           R +  ++   G + N  T+  ++       K +  L +L  M  +     D   Y T++ 
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILK 248

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A  K GRL +  + +  M  +G+  + V+YN L+  YCK G L+ A+ +++ M++     
Sbjct: 249 AMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLP 308

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D  T+ ILI+GLC AG+++     ++ M  +    ++  YN ++D   + G    A  + 
Sbjct: 309 DLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLM 368

Query: 244 ESMEVKDSFTYSSMVHN-----LCKAKR 266
           E ME  D    + + HN     LCK ++
Sbjct: 369 EQME-NDGVKANQVTHNISLKWLCKEEK 395



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 1/168 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP  +TFN ++ GLC +  T+ A+  F  L + G +P+  T+N +I G CK GR+  A 
Sbjct: 517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAF 576

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               E       P+  T   ++    +    +  L   + +  +    D   Y T+I+AF
Sbjct: 577 EFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEE-REVDTVTYNTMISAF 635

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
            K  +LKEA D + +M   G++ D  +YN+ I+L  ++GKL     LL
Sbjct: 636 CKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELL 683



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 12/247 (4%)

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR---LKE 133
            P+   +   +       K  + L+I   M R     +     T++   V+      +  
Sbjct: 128 PPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISS 187

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILI 192
           A +  + MV  GV L++ ++N L+N YC EGKLE A  +L+ M  +     D  T+  ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
             + K G +   +  L  M K G   N   YN +V    K G +  A  + E M+    +
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL--LSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
            D  TY+ +++ LC A  +    +L+  +  LK    ++      ++DG    G   EA+
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVV--TYNTLIDGCFELGLSLEAR 365

Query: 307 KIQSKIR 313
           K+  ++ 
Sbjct: 366 KLMEQME 372



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK---AGNIKGARLHLE 209
           ++  ++ Y  EGK   A  +  +M +   + +  T   L+ GL +   + +I  AR   +
Sbjct: 134 FDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFD 193

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--EVK---DSFTYSSMVHNLCKA 264
            M KIG   N++ +N +V+    +GK++ A+ + E M  E K   D+ TY++++  + K 
Sbjct: 194 DMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKK 253

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
            RL    +LLL   K+G+   +     +V G    G  +EA +I   ++   +
Sbjct: 254 GRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNV 306


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 5/287 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG 59
            M+     P   T   +++GLCK  +T+ A R+F  L +   + P + TY  +I G CK  
Sbjct: 927  MVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEE 986

Query: 60   RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
            +L  A  + + + + G  PN  TYTT++    +   +    E++  M  +G+  +   Y 
Sbjct: 987  KLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYN 1046

Query: 120  TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            +++    K GR +EA   +     + ++ D V+Y  LI+  CK   +  A + L++M K 
Sbjct: 1047 SIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKV 1106

Query: 180  GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
            GF+ D + +T LI   C+   +K +    + + K+G     E Y  ++    ++ K+  A
Sbjct: 1107 GFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLA 1166

Query: 240  INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +  F+ M       DS +Y +++  LCK  RL  A +L  + +  G+
Sbjct: 1167 VKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGL 1213



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 137/281 (48%), Gaps = 5/281 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P + T+  ++ G C+N     A R    + + GFV +  T  ++I   C+   +  A W 
Sbjct: 829  PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWF 888

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              ++   G +PN I Y++++    +    K   E+L  M + G+  + + + ++I    K
Sbjct: 889  FHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCK 948

Query: 128  IGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
             G  + A   +++ + +D  + ++ +Y  +I+ YCKE KL  A +L + M++QG   +  
Sbjct: 949  KGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTN 1008

Query: 187  THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV---- 242
            T+T LIDG CKAGN   A   +E M+  GF  N   YN IVD L K G+ + A  +    
Sbjct: 1009 TYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTG 1068

Query: 243  FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            F++    D  TY+ ++   CK   +  A   L    K G +
Sbjct: 1069 FQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQ 1109



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 141/308 (45%), Gaps = 5/308 (1%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTA 64
            L+P    ++ M++GLCK      A  +   + K+G+ P + T+  LI GLCK G   R  
Sbjct: 897  LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 956

Query: 65   RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            R  LK +    + PN  TYT ++    +  K      +   MK +G   +   Y T+I  
Sbjct: 957  RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 1016

Query: 125  FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
              K G   +A + ME M  +G   +  +YN++++  CK G+ E A+ LL+   +   E D
Sbjct: 1017 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD 1076

Query: 185  KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              T+TILI   CK  ++  A + L  M K+GF  ++  Y  ++    +   +  +  +F+
Sbjct: 1077 GVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFD 1136

Query: 245  SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             +          TY+SM+   C+ K++  A K        G      +  A++ GL    
Sbjct: 1137 EVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKES 1196

Query: 301  CRREAKKI 308
               EA+++
Sbjct: 1197 RLDEARQL 1204



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P   T+  M++G CK      A  +F  +++ G VP   TY  LI G CKAG    A  +
Sbjct: 970  PNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYEL 1029

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            ++ + + G  PN  TY +I+    +  + +   ++L+   +     DG  Y  +I+   K
Sbjct: 1030 MELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCK 1089

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
               + +A  ++ +M   G Q DI  Y TLI  +C++  ++ +  L DE+ K G    K T
Sbjct: 1090 RADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKET 1149

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
            +T +I G C+   +  A    + M+  G   +  +Y  ++  L K+ ++D A  ++++M 
Sbjct: 1150 YTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMI 1209

Query: 248  VKD----SFTYSSMVHNLCKAKRLPSASKLL 274
             K       T  ++ +  CK +   SA  +L
Sbjct: 1210 DKGLSPCEVTRVTLTYEYCKTEDFASAMVIL 1240



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 29   ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW---ILKELGDSGHAPNAITYTT 85
            A+ M   ++  G V   +T  ++ + +  A  +R   +   +  E+   G  P++ TY  
Sbjct: 780  AVDMILDMRNQGLV---LTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 836

Query: 86   IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
            I+    RN         +  M  +G+  D      +I AF +   +  A  +  ++   G
Sbjct: 837  IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 896

Query: 146  VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA- 204
            +  ++++Y+++I+  CK G ++ A+ LL+EM K G++ + YTHT LI GLCK G  + A 
Sbjct: 897  LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 956

Query: 205  RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
            RL L+ +    +  N+  Y  ++    K+ K+  A  +FE M+    V ++ TY++++  
Sbjct: 957  RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 1016

Query: 261  LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
             CKA     A +L+      G         ++VDGL   G   EA K+
Sbjct: 1017 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKL 1064



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 93/206 (45%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P T T+N +++GLCK    + A ++     ++    + VTY ILI   CK   +  A   
Sbjct: 1040 PNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVF 1099

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
            L ++   G  P+   YTT++    R    K   ++   + + G       Y ++I  + +
Sbjct: 1100 LNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCR 1159

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              ++  A  + ++M   G   D +SY  LI+  CKE +L+ A  L D M  +G    + T
Sbjct: 1160 EKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVT 1219

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNK 213
               L    CK  +   A + LE +NK
Sbjct: 1220 RVTLTYEYCKTEDFASAMVILERLNK 1245



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 3/185 (1%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            T+ I+++  CK    + AL     + K GF P++  Y  LI   C+   ++ +  +  E+
Sbjct: 1079 TYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEV 1138

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
               G AP   TYT+++    R +K  L ++    M   G   D   Y  +I+   K  RL
Sbjct: 1139 IKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRL 1198

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             EA    + M+  G+    V+  TL   YCK     +A ++L+ + K+ +   +  HT L
Sbjct: 1199 DEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLW--IRTVHT-L 1255

Query: 192  IDGLC 196
            I  LC
Sbjct: 1256 IRKLC 1260



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 41/200 (20%)

Query: 121 VIAAFVKIGRLKEATDYM-----------------------------------EQMVTDG 145
           ++  F +IG+LKEA D +                                   ++M   G
Sbjct: 767 MVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARG 826

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V  D  +Y  +I  YC+ G +  A   + EM ++GF  D  T T++I   C+   +  A 
Sbjct: 827 VYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAV 886

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS-----FTYSSMVHN 260
                + K+G   NL  Y+ ++  L K G +  A  + E M VK+      +T++S++H 
Sbjct: 887 WFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEM-VKNGWKPNVYTHTSLIHG 945

Query: 261 LCKAKRLPSASKLLLSCLKS 280
           LCK      A +L L  ++S
Sbjct: 946 LCKKGWTERAFRLFLKLIRS 965



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P   T+  M+ G C+ +    A++ F+ +  HG  P+ ++Y  LI GLCK  RL  AR
Sbjct: 1143 LAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEAR 1202

Query: 66   WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
             +   + D G +P  +T  T+     +   +   + IL  + +K
Sbjct: 1203 QLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKK 1246


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 155/346 (44%), Gaps = 41/346 (11%)

Query: 8   PCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   TF  ++NG C  NR+ + A+ +   +   G+ P +V YN +I  LC+ G++ TA  
Sbjct: 147 PSIVTFGSLVNGFCHVNRFYE-AMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALD 205

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +LK +   G  P+ +TY +++   F +  + +   ILS M R G + D   +  +I  + 
Sbjct: 206 VLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYG 265

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF----- 181
           K G+L EA     +M+   V  +IV+YN+LIN  C  G L+ A  +L+ +  +GF     
Sbjct: 266 KEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAV 325

Query: 182 ------------------------------ECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
                                         + D +T+  L  G C+AG    A   L  M
Sbjct: 326 TYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRM 385

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
              G   ++  +N ++D L   GKI  A+   E ++    V    TY+ ++  LCKA ++
Sbjct: 386 VSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKV 445

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             A  L  S    GV         ++ GLR     REA ++  K++
Sbjct: 446 EDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQ 491



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 4/289 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F  +++  C+      AL     + K GF P +VT+  L+ G C   R   A  ++ ++
Sbjct: 116 SFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQI 175

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G+ PN + Y TI+       +    L++L  MK+ G   D   Y ++I      G  
Sbjct: 176 VGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTW 235

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             +   +  M+  G+  D+++++ LI++Y KEG+L  A    +EM ++    +  T+  L
Sbjct: 236 GVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSL 295

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I+GLC  G +  A+  L  +   GF  N   YN +++   K  ++D  + +   M     
Sbjct: 296 INGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGV 355

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             D+FTY+++    C+A +  +A K+L   +  GV         ++DGL
Sbjct: 356 DGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGL 404



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 104/199 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   TF+ +++   K      A + +  + +    P +VTYN LI GLC  G L  A+
Sbjct: 250 ISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAK 309

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  L   G  PNA+TY T++    + ++   G++IL  M R G   D F Y T+   +
Sbjct: 310 KVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGY 369

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G+   A   + +MV+ GV  D+ ++N L++  C  GK+  A + L++++K       
Sbjct: 370 CQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGI 429

Query: 186 YTHTILIDGLCKAGNIKGA 204
            T+ I+I GLCKA  ++ A
Sbjct: 430 ITYNIIIKGLCKADKVEDA 448



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 6/280 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    F+ +L  + K    +  + +FR L+  G   +L ++  LI   C+  RL  A   
Sbjct: 77  PSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSC 136

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L ++   G  P+ +T+ +++   C  NR Y+  + ++  +   GY  +   Y T+I +  
Sbjct: 137 LGKMMKLGFEPSIVTFGSLVNGFCHVNRFYE-AMSLVDQIVGLGYEPNVVIYNTIIDSLC 195

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G++  A D ++ M   G++ D+V+YN+LI      G    +  +L +M + G   D  
Sbjct: 196 EKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVI 255

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T + LID   K G +  A+     M +   + N+  YN +++ L   G +D A  V   +
Sbjct: 256 TFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVL 315

Query: 247 EVKDSF----TYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
             K  F    TY+++++  CKAKR+    K+L    + GV
Sbjct: 316 VSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGV 355



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 129/261 (49%), Gaps = 5/261 (1%)

Query: 18  NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 77
           +GL   ++ D AL +F  + +   +P +V ++ L+  + K  +      + + L   G +
Sbjct: 53  SGLHSIKFND-ALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGIS 111

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
            +  ++TT++ C  R  +  L L  L  M + G+      + +++  F  + R  EA   
Sbjct: 112 HDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSL 171

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           ++Q+V  G + ++V YNT+I+  C++G++  A  +L  M+K G   D  T+  LI  L  
Sbjct: 172 VDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFH 231

Query: 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253
           +G    +   L  M ++G   ++  ++ ++D  GK+G++  A   +  M  +    +  T
Sbjct: 232 SGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVT 291

Query: 254 YSSMVHNLCKAKRLPSASKLL 274
           Y+S+++ LC    L  A K+L
Sbjct: 292 YNSLINGLCIHGLLDEAKKVL 312



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 61/109 (55%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFNI+L+GLC +     AL     LQK   V  ++TYNI+IKGLCKA +
Sbjct: 385 MVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADK 444

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           +  A ++   L   G +P+ ITY T+M    R R ++   E+   M+++
Sbjct: 445 VEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKE 493



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 31/201 (15%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           +  ++ A  K+ + +        +   G+  D+ S+ TLI+ +C+  +L  A   L +M 
Sbjct: 82  FSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMM 141

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           K GFE    T   L++G C       A   ++ +  +G++ N+  YN I+D         
Sbjct: 142 KLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIID--------- 192

Query: 238 HAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
                                 +LC+  ++ +A  +L    K G+R       +++  L 
Sbjct: 193 ----------------------SLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLF 230

Query: 298 HSGCRREAKKIQSKIRMAKIS 318
           HSG    + +I S +    IS
Sbjct: 231 HSGTWGVSARILSDMMRMGIS 251


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 152/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++ I +  L +    + A ++ + ++  G  P++VT  +LI+ LC AGR+  A+ +
Sbjct: 249 PNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDV 308

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++  S   P+ +TY T++  C  N   +  +EI +AMK  GY  +   Y  V+ A  +
Sbjct: 309 FWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQ 368

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +GR+ EA+D  +QM   G++    SYN+LI+ + K  +L  A  L + M   G   + YT
Sbjct: 369 VGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYT 428

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           + + I+   K+G    A    E M   G   ++ A N ++  L K G++  A  VF  ++
Sbjct: 429 YVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELK 488

Query: 248 V----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
                 D+ TY+ M+    KA     A K+    +++       A  +++D L  +G   
Sbjct: 489 SIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGN 548

Query: 304 EAKKIQSKIR 313
           EA KI  +++
Sbjct: 549 EAWKIFHELK 558



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 148/300 (49%), Gaps = 4/300 (1%)

Query: 10   TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            T ++N ++ GL      D A  +F  +++ G  P+  TYN+++  + K+ R+     + K
Sbjct: 776  TGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQK 835

Query: 70   ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            E+   G+    +TY TI+    +++     +++   +  +G++     Y  ++   +K G
Sbjct: 836  EMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDG 895

Query: 130  RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            ++++A D  ++M+  G + +   YN L+N Y   G  E    L   M  QG   D  ++T
Sbjct: 896  KIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYT 955

Query: 190  ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            +LI  LC AG +  +  +   + ++G + +L  YN ++  LG+ G+++ A+++F  ME  
Sbjct: 956  VLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKS 1015

Query: 248  --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
                + +TY+S++  L K  +   A K+    LK+G +       A++ G   SG    A
Sbjct: 1016 GIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNA 1075



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 121/265 (45%), Gaps = 4/265 (1%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M C        T+N +++GL K++    A+ ++  L   GF P   TY  L+ GL K G+
Sbjct: 837  MHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGK 896

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            +  A  +  E+ D G  PN   Y  ++         +   E+   M  +G   D   Y  
Sbjct: 897  IEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTV 956

Query: 121  VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            +I A    GRL ++  Y  Q+   G++ D+++YN LI+   + G+LE A  L ++MEK G
Sbjct: 957  LIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSG 1016

Query: 181  FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
               + YT+  LI  L K G    A    E + K G+  N+  YN ++      G  D+A 
Sbjct: 1017 IAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAF 1076

Query: 241  NVFESMEV----KDSFTYSSMVHNL 261
              +  M V     +S TY  + + L
Sbjct: 1077 ASYGQMIVGGCPPNSSTYMQLPNQL 1101



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 146/315 (46%), Gaps = 4/315 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+ + +N   K+  +  A++ +  ++  G VP++V  N ++  L K+GRL  A+ 
Sbjct: 423 TPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKR 482

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  EL   G  P+ ITYT ++KCC +       +++ S M       D     ++I    
Sbjct: 483 VFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLY 542

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR  EA     ++    +     +YNTL+    +EGK++    LL+EM    +  +  
Sbjct: 543 KAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLI 602

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+  ++D LCK G +  A   L  M   G   +L +YN  +  L K+ ++  A  +F  M
Sbjct: 603 TYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQM 662

Query: 247 E---VKDSFTYSSMVHNLCKAKRLPSASKLLLS-CLKSGVRILKSAQKAVVDGLRHSGCR 302
           +     D  T  +++ +  K   +  A   L    L+ G +  +S+  ++++G+      
Sbjct: 663 KKVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGM 722

Query: 303 REAKKIQSKIRMAKI 317
            ++ +    I +++I
Sbjct: 723 EKSIEFAENIALSRI 737



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 4/255 (1%)

Query: 8    PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
            P   T+N++L+ + K+   ++ L++ + +   G+    VTYN +I GL K+  L  A  +
Sbjct: 809  PDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDL 868

Query: 68   LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
              +L   G +P   TY  ++    ++ K +   ++   M   G   +   Y  ++  +  
Sbjct: 869  YYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRL 928

Query: 128  IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             G  ++  +  + MV  G+  DI SY  LI   C  G+L  +     ++ + G E D  T
Sbjct: 929  AGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLIT 988

Query: 188  HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
            + +LI GL ++G ++ A      M K G   NL  YN ++  LGK+GK   A  ++E + 
Sbjct: 989  YNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELL 1048

Query: 247  ---EVKDSFTYSSMV 258
                  + FTY++++
Sbjct: 1049 KNGWKPNVFTYNALI 1063



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 141/306 (46%), Gaps = 5/306 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++  L K+ Y   A+ +++ +   G VP + TY++L+    K   + T  W+L+E+
Sbjct: 184 TYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKR-DVETVVWLLREM 242

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            D G  PN  +YT  ++   +  +++   +IL  M+ +G   D      +I      GR+
Sbjct: 243 EDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRV 302

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D   +M     + D V+Y TL++     G   +   + + M+  G+  +   +T +
Sbjct: 303 SDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAV 362

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           +D LC+ G +  A    + M + G +    +YN ++    K  +++HA+ +F  M +   
Sbjct: 363 VDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGP 422

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             + +TY   ++   K+     A K        G+     A  AV+  L  SG    AK+
Sbjct: 423 TPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKR 482

Query: 308 IQSKIR 313
           +  +++
Sbjct: 483 VFHELK 488



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 129/304 (42%), Gaps = 39/304 (12%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
              +  +++ LC+    D A  +F  +++ G  P+  +YN LI G  KA RL  A  +  
Sbjct: 356 VVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFN 415

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  PN  TY   +    ++ +    ++    MK KG   D      V+ +  K G
Sbjct: 416 HMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSG 475

Query: 130 RL-----------------------------------KEATDYMEQMVTDGVQLDIVSYN 154
           RL                                    EA     +M+      D+++ N
Sbjct: 476 RLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVN 535

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
           +LI+   K G+   A+ +  E+++   +    T+  L+ GL + G +K     LE MN  
Sbjct: 536 SLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSN 595

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
            +  NL  YN ++D L K+G++++A+ +  +M +K    D  +Y++ +H L K  RL  A
Sbjct: 596 SYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEA 655

Query: 271 SKLL 274
            ++ 
Sbjct: 656 FRIF 659



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 134/344 (38%), Gaps = 41/344 (11%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +L P   T+N +L GL +       + +   +  + + P L+TYN ++  LCK G +  A
Sbjct: 561 NLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYA 620

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L  +   G  P+  +Y T +    +  +      I   MK K    D    CT++ +
Sbjct: 621 LGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMK-KVLAPDYTTLCTILPS 679

Query: 125 FVKIGRLKEA------------------------------------TDYMEQMVTDGVQL 148
           FVK G + EA                                     ++ E +    + L
Sbjct: 680 FVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILL 739

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
           D    + LI   CK  K   A+ L+ + E  G      ++  LI GL     I  A    
Sbjct: 740 DDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLF 799

Query: 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 264
             M ++G D +   YN I+D +GK  +I+  + V + M  K       TY++++  L K+
Sbjct: 800 SEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKS 859

Query: 265 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           K L  A  L    +  G          ++DGL   G   +A+ +
Sbjct: 860 KMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDL 903



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 124/278 (44%), Gaps = 4/278 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   D  P   T+  +L+    N  + + + ++  ++  G+   +V Y  ++  LC+ GR
Sbjct: 312 MKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGR 371

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +  ++   G  P   +Y +++    +  +    LE+ + M   G T +G+ Y  
Sbjct: 372 VDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVL 431

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I  + K G   +A    E M + G+  D+V+ N ++    K G+L  A  +  E++  G
Sbjct: 432 FINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIG 491

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+T++I    KA N   A      M +     ++ A N ++D L K G+ + A 
Sbjct: 492 VCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAW 551

Query: 241 NVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLL 274
            +F  ++  +      TY++++  L +  ++     LL
Sbjct: 552 KIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLL 589



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 140/335 (41%), Gaps = 43/335 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P   T+N +L+ LCKN   + AL M   +   G +P+L +YN  + GL K  RL  A  
Sbjct: 598 PPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFR 657

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA--------------------- 105
           I  ++     AP+  T  TI+    +N      L  L                       
Sbjct: 658 IFCQMKKV-LAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGI 716

Query: 106 MKRKGYT---------------FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150
           +KR G                  D F    +I    K  +  EA + +++  + GV L  
Sbjct: 717 LKRAGMEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKT 776

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210
            SYN LI     E  ++ A  L  EM++ G + D++T+ +++D + K+  I+      + 
Sbjct: 777 GSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKE 836

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHNLCKAK 265
           M+  G++S    YN I+  L K   +  A++++  + + + F     TY  ++  L K  
Sbjct: 837 MHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKL-MSEGFSPTPCTYGPLLDGLLKDG 895

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           ++  A  L    L  G +  ++    +++G R +G
Sbjct: 896 KIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAG 930



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 74/320 (23%)

Query: 29  ALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           AL++F+ + Q+   V    + N +++ +   GR+R    +   +       N  T+ TI 
Sbjct: 95  ALQLFKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIF 154

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           +        +     L  MK  G   + + Y  +I   VK G  +EA +  + M TDG+ 
Sbjct: 155 RSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIV 214

Query: 148 LDIVSYNTLI-------------------------NLYC---------KEGKLEAAYLLL 173
             + +Y+ L+                         N+Y          + G+ E AY +L
Sbjct: 215 PSVRTYSVLMLAFGKRDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKIL 274

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGA----------------------------- 204
            +ME +G + D  T+T+LI  LC AG +  A                             
Sbjct: 275 QKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDN 334

Query: 205 ---RLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTY 254
              R  +E  N +   G++ N+ AY  +VD L + G++D A +VF+ M+ K      ++Y
Sbjct: 335 GDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSY 394

Query: 255 SSMVHNLCKAKRLPSASKLL 274
           +S++    KA RL  A +L 
Sbjct: 395 NSLISGFLKADRLNHALELF 414



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 5/191 (2%)

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
           GR+++     + M    V+ ++ ++ T+      EG L +A + L  M++ G   + YT+
Sbjct: 126 GRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTY 185

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             LI  L K+G  + A    + M   G   ++  Y+ ++   GK   ++  + +   ME 
Sbjct: 186 NGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKR-DVETVVWLLREMED 244

Query: 248 --VKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
             VK + ++Y+  +  L +A R   A K+L      G +        ++  L  +G   +
Sbjct: 245 HGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSD 304

Query: 305 AKKIQSKIRMA 315
           AK +  K++ +
Sbjct: 305 AKDVFWKMKAS 315


>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 136/264 (51%), Gaps = 7/264 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P + ++NIM+ G  K    + A  +F  + + G  P +VTYN  +  LC+ G + TA
Sbjct: 181 DFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTA 240

Query: 65  RWILKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             + K + + GH PNA+TY  +M+  CF   KYK   +++  M+  G       Y  ++ 
Sbjct: 241 LCLFKNMTEKGHHPNAVTYALLMEGWCFIG-KYKEAKKLMFDMEFHGCKLRPVNYGVLMT 299

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K G + E    + +M    ++ D+V+YN L+N  CKEGK+  AY +L +M+  G + 
Sbjct: 300 HLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDP 359

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY-NCIVDRLGKDGKIDHAINV 242
           +  T+ ++IDG C AG+  GA   L  M   G   +L+ + + +V  L  +   D+   V
Sbjct: 360 NAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVCFV 419

Query: 243 FESMEVK----DSFTYSSMVHNLC 262
            E ME +    D+ T+  ++ ++C
Sbjct: 420 LEEMEKRQLRFDAETWRILIMDVC 443



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 142/326 (43%), Gaps = 39/326 (11%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           AL +F    + GF     +Y+ LI  L ++ R      IL  L +     N   +  +++
Sbjct: 65  ALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVALIQ 124

Query: 89  ---------------------CCFRN-RKYKLGLEIL---------SAMKRKGYTFD--- 114
                                 CFR  + + + L  L         S + ++ Y  D   
Sbjct: 125 HYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMDFRP 184

Query: 115 -GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
               Y  +I  ++K G  ++A +  ++M+  GVQ  +V+YN+ + + C++G+++ A  L 
Sbjct: 185 NSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLF 244

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
             M ++G   +  T+ +L++G C  G  K A+  +  M   G       Y  ++  LGK 
Sbjct: 245 KNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKT 304

Query: 234 GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G ID   ++   M+ +    D  TY+ +V+ LCK  ++  A K+L+     G     +  
Sbjct: 305 GNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATY 364

Query: 290 KAVVDGLRHSGCRREAKKIQSKIRMA 315
           + ++DG  ++G    A KI + + M+
Sbjct: 365 RMMIDGYCNAGDFDGAMKILNAMLMS 390


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 144/297 (48%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ GLC  R   +AL M   + ++G +P+ ++Y  ++  LCK  R+   + +
Sbjct: 229 PDVVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNL 288

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ + D+G  P+ +TY  ++    ++      L  L   + K +  D  GY   + +F  
Sbjct: 289 LERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCL 348

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR+ EA + + +M++ G + D+V+Y+ +++ +C+ G+L+ A  ++  M K G + +  T
Sbjct: 349 NGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVT 408

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           HT L++GLCK G    A   L    +  +  +   Y+ ++    ++GK+  + +V   M 
Sbjct: 409 HTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQML 468

Query: 248 VKDSFTYSS----MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            K  F  +     ++H LC  ++   A   +  C   G  I       V+ G    G
Sbjct: 469 QKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQG 525



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 151/345 (43%), Gaps = 43/345 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQK--------------HGFV----------- 42
           P   T+N++++GL K+ + D AL   R  +               H F            
Sbjct: 299 PDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEI 358

Query: 43  ----------PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92
                     P++VTY+ ++ G C+ G L  AR ++K +  +G  PN +T+T ++    +
Sbjct: 359 IGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCK 418

Query: 93  NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
             K     E+L+  + + +T     Y  V+  F + G+LKE+ D + QM+  G     V 
Sbjct: 419 VGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVE 478

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
            N LI+  C E K   A   +++ + +G   +    T +I G  + G+++ A   L+ M 
Sbjct: 479 INLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDMY 538

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
                 ++  Y  +VD LG+ GK+  A ++ E M  +       TY +++H  C+   + 
Sbjct: 539 LTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRTVIHRYCEKGAVE 598

Query: 269 SASKLLLSCL-KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
               LL   L K G     SA   V++ L   G   EA  + SK+
Sbjct: 599 DLLNLLDKMLAKEG---FSSAYNQVIEKLCAFGKLSEANNLLSKV 640



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 133/282 (47%), Gaps = 4/282 (1%)

Query: 28  NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87
           +A+R+ + +QK G  P++   N+ +  L  AGR+  A    + +   G  P+ +TY  ++
Sbjct: 179 SAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLI 238

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
           K     R+    LE++S+M + G   D   Y TV++   K  R+ +  + +E+M   G+ 
Sbjct: 239 KGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIF 298

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            D V+YN LI+   K G  + A   L E E + F  D+  ++  +   C  G +  A+  
Sbjct: 299 PDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEI 358

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 263
           +  M   G   ++  Y+ +VD   + G++D A  + + M       ++ T++++++ LCK
Sbjct: 359 IGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCK 418

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
             +   A +LL    +            V+ G R  G  +E+
Sbjct: 419 VGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKES 460



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 132/304 (43%), Gaps = 4/304 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            F+ ML  L + R  D A R+ R + + G       +  L+    +AG+LR+A  +L+ +
Sbjct: 128 VFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLMLSYSRAGKLRSAMRVLQLM 187

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G AP+       +       +    LE    M+R G   D   Y  +I       R+
Sbjct: 188 QKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRI 247

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A + +  M+ +G   D +SY T+++  CKE ++     LL+ M   G   D+ T+ +L
Sbjct: 248 VDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNML 307

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I GL K G+   A   L       F  +   Y+  V     +G++  A  +   M  K  
Sbjct: 308 IHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGC 367

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TYS++V   C+   L  A K++    K+G +       A+++GL   G   EA +
Sbjct: 368 RPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWE 427

Query: 308 IQSK 311
           + +K
Sbjct: 428 LLNK 431



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 131/317 (41%), Gaps = 43/317 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T   +LNGLCK   +  A  +    ++  + P  +TY++++ G  + G+L+ +  +
Sbjct: 404 PNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDV 463

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  P  +    ++      RK     + +   + KG   +   + TVI  F +
Sbjct: 464 VMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSR 523

Query: 128 IG-----------------------------------RLKEATDYMEQMVTDGVQLDIVS 152
            G                                   ++KEAT  +E+M+  G+    V+
Sbjct: 524 QGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVT 583

Query: 153 YNTLINLYCKEGKLEAAYLLLDEM-EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           Y T+I+ YC++G +E    LLD+M  K+GF      +  +I+ LC  G +  A   L  +
Sbjct: 584 YRTVIHRYCEKGAVEDLLNLLDKMLAKEGFSS---AYNQVIEKLCAFGKLSEANNLLSKV 640

Query: 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINV----FESMEVKDSFTYSSMVHNLCKAKRL 267
            +     + +  + ++D     G    + NV    F+   + D      +   L  A   
Sbjct: 641 LRTASKRDAQTCHILMDSFLNRGLPLQSYNVACRMFQRNLIPDLKLCQKVDSQLALAGEK 700

Query: 268 PSASKLLLSCLKSGVRI 284
            +A KL++  ++ GV +
Sbjct: 701 QAAGKLIIKFVERGVNM 717



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 107/272 (39%), Gaps = 41/272 (15%)

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
           HAP    +  ++    R R +     ++  M R+G       +  ++ ++ + G+L+ A 
Sbjct: 124 HAPE--VFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLMLSYSRAGKLRSAM 181

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
             ++ M  DG   DI   N  +N+    G+++ A    + M + G + D  T+  LI GL
Sbjct: 182 RVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLIKGL 241

Query: 196 CKAGNI------------------------------KGARLH-----LEYMNKIGFDSNL 220
           C A  I                              K  R+      LE M+  G   + 
Sbjct: 242 CGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQ 301

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLS 276
             YN ++  L K G  D A++     E K    D   YS+ VH+ C   R+  A +++  
Sbjct: 302 VTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGE 361

Query: 277 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +  G R       AVVDG    G   +A+K+
Sbjct: 362 MISKGCRPDVVTYSAVVDGFCRIGELDQARKM 393


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 135/271 (49%), Gaps = 4/271 (1%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P    +N++++GLCK        ++   +   G  P  VTYN LI GLC  G+L  A  
Sbjct: 254 SPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVS 313

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L+ +  S   PN +TY T++    + R+   G  +L +M+ +GY  +   Y  +I+   
Sbjct: 314 LLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLF 373

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K G+ +EA    ++M   G + +IV Y+ +I+  C+EGK   A  +L+ M   G   + Y
Sbjct: 374 KEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVY 433

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T++ L+ G  K G  + A      M++ G   N   Y+ ++D L   G++  A+ V+  M
Sbjct: 434 TYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKM 493

Query: 247 EV----KDSFTYSSMVHNLCKAKRLPSASKL 273
                  D+  YSSM+  LC    + +A KL
Sbjct: 494 LTIGIKPDTVAYSSMIKGLCGIGSMDAALKL 524



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 155/312 (49%), Gaps = 4/312 (1%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           +++P   +FN+++  LCK  + D A+ +FRG+ +   +P+  TY  L+ GLCK  R+  A
Sbjct: 182 NISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEA 241

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +L E+   G +P+ + Y  ++    +        +++  M  KG   +   Y T+I  
Sbjct: 242 VLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHG 301

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G+L +A   +E+MV+     + V+Y TLIN   K+ +      LL  ME++G+  +
Sbjct: 302 LCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLN 361

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           ++ +++LI GL K G  + A    + M + G   N+  Y+ ++D L ++GK + A  +  
Sbjct: 362 QHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILN 421

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            M     + + +TYSS++    K      A ++     ++G    +     ++DGL   G
Sbjct: 422 GMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVG 481

Query: 301 CRREAKKIQSKI 312
             +EA  + SK+
Sbjct: 482 RVKEAMMVWSKM 493



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  +++GLCK    D A+ +   +Q  G  P  V YN+LI GLCK G L     +
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKL 279

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           +  +   G  PN +TY T++       K    + +L  M       +   Y T+I   VK
Sbjct: 280 VDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVK 339

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R  +    +  M   G +L+   Y+ LI+   KEGK E A  L  +M ++G   +   
Sbjct: 340 QRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVV 399

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++ +IDGLC+ G    A+  L  M   G   N+  Y+ ++    K G  + AI V+  M+
Sbjct: 400 YSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMD 459

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                ++ F YS ++  LC   R+  A  +    L  G++    A  +++ GL
Sbjct: 460 ETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGL 512



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 143/333 (42%), Gaps = 63/333 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF------------------- 41
           M+     P   T+  ++NGL K R   +  R+   +++ G+                   
Sbjct: 318 MVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGK 377

Query: 42  ----------------VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
                            P +V Y+ +I GLC+ G+   A+ IL  +  SG  PN  TY++
Sbjct: 378 AEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSS 437

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +MK  F+    +  +++   M   G + + F Y  +I     +GR+KEA     +M+T G
Sbjct: 438 LMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIG 497

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEM---EKQGFECDKYTHTILIDGLCKAGNIK 202
           ++ D V+Y+++I   C  G ++AA  L  EM   E+   + D  T+ IL+DGLC   ++ 
Sbjct: 498 IKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVS 557

Query: 203 GARLHLEYMNKIGFDSNLEAYNC---------------------IVDRLGKDGKIDHAIN 241
            A   L  M   G D ++   N                      +V RL K  ++  A  
Sbjct: 558 RAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVARLLKRQRVSGACK 617

Query: 242 VFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           + E M  K     + T++ +V  +CK K++ +A
Sbjct: 618 IVEVMLGKYLAPKTSTWAMIVPEICKPKKINAA 650



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 140/294 (47%), Gaps = 16/294 (5%)

Query: 34  RGLQKHGFV----------PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 83
           RGL+ + +V          P  +++N++IK LCK G +  A  + + + +    P+  TY
Sbjct: 166 RGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTY 225

Query: 84  TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143
            T+M    +  +    + +L  M+ +G +     Y  +I    K G L   T  ++ M  
Sbjct: 226 CTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFL 285

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN-IK 202
            G   + V+YNTLI+  C +GKL+ A  LL+ M       +  T+  LI+GL K    + 
Sbjct: 286 KGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMD 345

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMV 258
           GARL +  M + G+  N   Y+ ++  L K+GK + A+ +++ M  K    +   YS+++
Sbjct: 346 GARLLIS-MEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVI 404

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             LC+  +   A ++L   + SG         +++ G   +G   EA ++  ++
Sbjct: 405 DGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREM 458


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 141/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 131 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 190

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 191 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVD 250

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  ++M++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK+T+T LI
Sbjct: 251 LAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 310

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 311 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLK 370

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    + G
Sbjct: 371 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDG 403



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 159 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 218

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 219 ELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 278

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D  +Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 279 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 338

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +    +   Y  I++   K G +     + + 
Sbjct: 339 VAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKE 398

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 399 MQ-RDGHAPSVVTYNV 413



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G +P  VT+  LI G CK GR
Sbjct: 189 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGR 248

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K +      P+ ITY T++    +    K   +++  M  KG   D F Y T
Sbjct: 249 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 308

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM    
Sbjct: 309 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVD 368

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 369 LKPDTGTYTMIINEFCKKGDVWKGSKL-LKEMQRDGHAPSVVTYNVLMN 416



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 100/194 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +     +P+L+TYN LI GLCK G 
Sbjct: 224 MLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGD 283

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+  TYTT++  C +        E    M ++    D   Y  
Sbjct: 284 LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTA 343

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++  ++ D  +Y  +IN +CK+G +     LL EM++ G
Sbjct: 344 LISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDG 403

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 404 HAPSVVTYNVLMNG 417



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 6/264 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 99  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 158

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 159 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 218

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+  CK G+++ A  +   M  Q    D  T+  LI GL
Sbjct: 219 ELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 278

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 279 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-D 337

Query: 251 SFTYSSMVHNLCKAKRLPSASKLL 274
              Y++++  LC+  R   A K+L
Sbjct: 338 DVAYTALISGLCQEGRSVDAEKML 361


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 5/287 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAG 59
           M+     P   T   +++GLCK  +T+ A R+F  L +   + P + TY  +I G CK  
Sbjct: 340 MVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEE 399

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           +L  A  + + + + G  PN  TYTT++    +   +    E++  M  +G+  +   Y 
Sbjct: 400 KLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYN 459

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           +++    K GR +EA   +     + ++ D V+Y  LI+  CK   +  A + L++M K 
Sbjct: 460 SIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKV 519

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           GF+ D + +T LI   C+   +K +    + + K+G     E Y  ++    ++ K+  A
Sbjct: 520 GFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLA 579

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +  F+ M       DS +Y +++  LCK  RL  A +L  + +  G+
Sbjct: 580 VKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGL 626



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 137/281 (48%), Gaps = 5/281 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P + T+  ++ G C+N     A R    + + GFV +  T  ++I   C+   +  A W 
Sbjct: 242 PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWF 301

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             ++   G +PN I Y++++    +    K   E+L  M + G+  + + + ++I    K
Sbjct: 302 FHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCK 361

Query: 128 IGRLKEATD-YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
            G  + A   +++ + +D  + ++ +Y  +I+ YCKE KL  A +L + M++QG   +  
Sbjct: 362 KGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTN 421

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV---- 242
           T+T LIDG CKAGN   A   +E M+  GF  N   YN IVD L K G+ + A  +    
Sbjct: 422 TYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTG 481

Query: 243 FESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
           F++    D  TY+ ++   CK   +  A   L    K G +
Sbjct: 482 FQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQ 522



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 141/308 (45%), Gaps = 5/308 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTA 64
           L+P    ++ M++GLCK      A  +   + K+G+ P + T+  LI GLCK G   R  
Sbjct: 310 LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 369

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R  LK +    + PN  TYT ++    +  K      +   MK +G   +   Y T+I  
Sbjct: 370 RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 429

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G   +A + ME M  +G   +  +YN++++  CK G+ E A+ LL+   +   E D
Sbjct: 430 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD 489

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+TILI   CK  ++  A + L  M K+GF  ++  Y  ++    +   +  +  +F+
Sbjct: 490 GVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFD 549

Query: 245 SM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +          TY+SM+   C+ K++  A K        G      +  A++ GL    
Sbjct: 550 EVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKES 609

Query: 301 CRREAKKI 308
              EA+++
Sbjct: 610 RLDEARQL 617



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+  M++G CK      A  +F  +++ G VP   TY  LI G CKAG    A  +
Sbjct: 383 PNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYEL 442

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           ++ + + G  PN  TY +I+    +  + +   ++L+   +     DG  Y  +I+   K
Sbjct: 443 MELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCK 502

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              + +A  ++ +M   G Q DI  Y TLI  +C++  ++ +  L DE+ K G    K T
Sbjct: 503 RADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKET 562

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T +I G C+   +  A    + M+  G   +  +Y  ++  L K+ ++D A  ++++M 
Sbjct: 563 YTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMI 622

Query: 248 VKD----SFTYSSMVHNLCKAKRLPSASKLL 274
            K       T  ++ +  CK +   SA  +L
Sbjct: 623 DKGLSPCEVTRVTLTYEYCKTEDFASAMVIL 653



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW---ILKELGDSGHAPNAITYTT 85
           A+ M   ++  G V   +T  ++ + +  A  +R   +   +  E+   G  P++ TY  
Sbjct: 193 AVDMILDMRNQGLV---LTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 249

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           I+    RN         +  M  +G+  D      +I AF +   +  A  +  ++   G
Sbjct: 250 IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 309

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA- 204
           +  ++++Y+++I+  CK G ++ A+ LL+EM K G++ + YTHT LI GLCK G  + A 
Sbjct: 310 LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 369

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHN 260
           RL L+ +    +  N+  Y  ++    K+ K+  A  +FE M+    V ++ TY++++  
Sbjct: 370 RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 429

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            CKA     A +L+      G         ++VDGL   G   EA K+
Sbjct: 430 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKL 477



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 93/206 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T+N +++GLCK    + A ++     ++    + VTY ILI   CK   +  A   
Sbjct: 453 PNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVF 512

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++   G  P+   YTT++    R    K   ++   + + G       Y ++I  + +
Sbjct: 513 LNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCR 572

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             ++  A  + ++M   G   D +SY  LI+  CKE +L+ A  L D M  +G    + T
Sbjct: 573 EKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVT 632

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNK 213
              L    CK  +   A + LE +NK
Sbjct: 633 RVTLTYEYCKTEDFASAMVILERLNK 658



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I+++  CK    + AL     + K GF P++  Y  LI   C+   ++ +  +  E
Sbjct: 491 VTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDE 550

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G AP   TYT+++    R +K  L ++    M   G   D   Y  +I+   K  R
Sbjct: 551 VIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESR 610

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           L EA    + M+  G+    V+  TL   YCK     +A ++L+ + K+ +   +  HT 
Sbjct: 611 LDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLW--IRTVHT- 667

Query: 191 LIDGLC 196
           LI  LC
Sbjct: 668 LIRKLC 673



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 41/200 (20%)

Query: 121 VIAAFVKIGRLKEATDYM-----------------------------------EQMVTDG 145
           ++  F +IG+LKEA D +                                   ++M   G
Sbjct: 180 MVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARG 239

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V  D  +Y  +I  YC+ G +  A   + EM ++GF  D  T T++I   C+   +  A 
Sbjct: 240 VYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAV 299

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS-----FTYSSMVHN 260
                + K+G   NL  Y+ ++  L K G +  A  + E M VK+      +T++S++H 
Sbjct: 300 WFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEM-VKNGWKPNVYTHTSLIHG 358

Query: 261 LCKAKRLPSASKLLLSCLKS 280
           LCK      A +L L  ++S
Sbjct: 359 LCKKGWTERAFRLFLKLIRS 378



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  M+ G C+ +    A++ F+ +  HG  P+ ++Y  LI GLCK  RL  AR
Sbjct: 556 LAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEAR 615

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 111
            +   + D G +P  +T  T+     +   +   + IL  + +K +
Sbjct: 616 QLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLW 661


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 151/300 (50%), Gaps = 4/300 (1%)

Query: 10   TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            T  +N ++ GL      D A  +F  +++ G  P+  TYN+L+  + K+ R+     + +
Sbjct: 880  TGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQE 939

Query: 70   ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            E+   G+    +TY TI+    ++R+ +  +++   +  +G++     Y  ++   +K G
Sbjct: 940  EMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAG 999

Query: 130  RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            R+++A +   +M+  G + +   YN L+N +   G  E    L  +M  QG   D  ++T
Sbjct: 1000 RIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYT 1059

Query: 190  ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            I+ID LCKAG +     +   + ++G + +L  YN ++D LGK  +++ A+++F  M+  
Sbjct: 1060 IIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 1119

Query: 248  --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
              V + +TY+S++ +L KA +   A K+    L  G +       A++ G   SG    A
Sbjct: 1120 GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSA 1179



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 150/307 (48%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++ I +  L + +  D A R+   ++  G  P+++T+ +LI+ LC AGR+  A+
Sbjct: 351 VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAK 410

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++  S   P+ +TY T++     N   +  +EI +AMK  GY  +   Y  VI A 
Sbjct: 411 DVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDAL 470

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++GR+ EA +  ++M   G+  +  SYN+LI+ + K  +   A  L   M+  G + + 
Sbjct: 471 CQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNG 530

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YTH + I+   K+G    A    E M   G   ++ A N ++  L K G++  A  VF  
Sbjct: 531 YTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHE 590

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++      D+ TY+ M+    KA +   A K+    +++       A  +++D L  +G 
Sbjct: 591 LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGR 650

Query: 302 RREAKKI 308
             EA +I
Sbjct: 651 GDEAWRI 657



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 111/237 (46%)

Query: 12   TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            T+N +++GL K+R  + A+ ++  L   GF P   TY  L+ GL KAGR+  A  +  E+
Sbjct: 952  TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 1011

Query: 72   GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             + G   N   Y  ++         +    +   M  +G   D   Y  +I    K G+L
Sbjct: 1012 LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 1071

Query: 132  KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             +   Y  Q++  G++ D+++YN LI+   K  +LE A  L +EM+K+G   + YT+  L
Sbjct: 1072 NDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSL 1131

Query: 192  IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
            I  L KAG    A    E +   G+  N+  YN ++      G  D A   +  M V
Sbjct: 1132 ILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIV 1188



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 153/315 (48%), Gaps = 12/315 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T  + +N   K+  +  A++ +  ++  G VP++V  N ++ GL K+GRL  A+ +
Sbjct: 528 PNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRV 587

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             EL   G +P+ ITYT ++KCC +  K+   ++I   M       D     ++I    K
Sbjct: 588 FHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYK 647

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  EA     Q+    ++    +YNTL+    +EGK++    LL+EM    +  +  T
Sbjct: 648 AGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLIT 707

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++D LCK G +  A   L  M   G   +L +YN ++  L K+ + + A ++F  M+
Sbjct: 708 YNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMK 767

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLS-CLKSGVRILKSAQKAVVDG-LRHSGCR 302
              + D  T  +++ +  K   +  A  ++    L+ G +  +S+  ++++G L+ +G  
Sbjct: 768 KVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAG-- 825

Query: 303 REAKKIQSKIRMAKI 317
                I+  I  A+I
Sbjct: 826 -----IEKSIEFAEI 835



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 144/311 (46%), Gaps = 4/311 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++  L K+ +   AL ++R +   G VP + TY++L+    K   + T  W+L+E+
Sbjct: 287 TYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 346

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN  +YT  ++   + +++     IL+ M+ +G   D   +  +I      GR+
Sbjct: 347 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 406

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D   +M     + D V+Y TL++ +   G  ++   + + M+  G+  +   +T +
Sbjct: 407 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 466

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           ID LC+ G +  A    + M + G      +YN ++    K  +   A+ +F+ M++   
Sbjct: 467 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 526

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             + +T+   ++   K+     A +        G+     A  AV+ GL  SG    AK+
Sbjct: 527 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 586

Query: 308 IQSKIRMAKIS 318
           +  +++   +S
Sbjct: 587 VFHELKAMGVS 597



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 151/382 (39%), Gaps = 74/382 (19%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            MI  +  P     N +++ L K    D A R+F  L++    P   TYN L+ GL + G+
Sbjct: 626  MIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGK 685

Query: 61   LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-- 118
            ++    +L+E+  S + PN ITY TI+ C  +N      L++L +M  KG   D   Y  
Sbjct: 686  VKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNT 745

Query: 119  --------------------------------CTVIAAFVKIGRLKEA------------ 134
                                            CT++ +FVKIG +KEA            
Sbjct: 746  VIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPG 805

Query: 135  ------------------------TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
                                     ++ E + + G+ LD      LI   CK+ K   A+
Sbjct: 806  SKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAH 865

Query: 171  LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
             L+ + +  G       +  LI GL     I  A      M ++G   +   YN ++D +
Sbjct: 866  ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 925

Query: 231  GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
            GK  +I+  + V E M  K       TY++++  L K++RL  A  L  + +  G     
Sbjct: 926  GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 985

Query: 287  SAQKAVVDGLRHSGCRREAKKI 308
                 ++DGL  +G   +A+ +
Sbjct: 986  CTYGPLLDGLLKAGRIEDAENL 1007



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 124/269 (46%), Gaps = 4/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF  +  GL       +A      +++ G V    TYN L+  L K+G  R A  + +
Sbjct: 250 VGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYR 309

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+  TY+ +M    + R  +  L +L  M+  G   + + Y   I    +  
Sbjct: 310 VMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAK 369

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R  EA   + +M  +G + D++++  LI + C  G++  A  +  +M+K   + D+ T+ 
Sbjct: 370 RFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYI 429

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            L+D     G+ +        M   G++ N+ AY  ++D L + G++  A+ +F+ M+  
Sbjct: 430 TLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 489

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             V + ++Y+S++    KA R   A +L 
Sbjct: 490 GIVPEQYSYNSLISGFLKADRFGDALELF 518



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 149/340 (43%), Gaps = 41/340 (12%)

Query: 1    MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            M   +  P   T+N +L+ LCKN   ++AL M   +   G +P+L +YN +I GL K  R
Sbjct: 696  MYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEER 755

Query: 61   ----------------------------------LRTARWILKE-LGDSGHAPNAITYTT 85
                                              ++ A  I+K+     G   +  +  +
Sbjct: 756  YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHS 815

Query: 86   IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
            +M+   +    +  +E    +   G T D F  C +I    K  +  EA + +++  + G
Sbjct: 816  LMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFG 875

Query: 146  VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            V L    YN+LI     E  ++ A  L  EM++ G   D++T+ +L+D + K+  I+   
Sbjct: 876  VSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEML 935

Query: 206  LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHN 260
               E M++ G++S    YN I+  L K  +++ AI+++ ++ +   F     TY  ++  
Sbjct: 936  KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL-MSQGFSPTPCTYGPLLDG 994

Query: 261  LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            L KA R+  A  L    L+ G +   +    +++G R +G
Sbjct: 995  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAG 1034



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 39/331 (11%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+  +L+    N  + + + ++  ++  G+   +V Y  +I  LC+ GR+  A
Sbjct: 420 DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 479

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  E+   G  P   +Y +++    +  ++   LE+   M   G   +G+ +   I  
Sbjct: 480 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINY 539

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K G   +A    E M + G+  D+V+ N ++    K G+L  A  +  E++  G   D
Sbjct: 540 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 599

Query: 185 KYTHTI-----------------------------------LIDGLCKAGNIKGARLHLE 209
             T+T+                                   LID L KAG    A     
Sbjct: 600 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFY 659

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAK 265
            + ++  +     YN ++  LG++GK+   +++ E M       +  TY++++  LCK  
Sbjct: 660 QLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNG 719

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +  A  +L S    G     S+   V+ GL
Sbjct: 720 AVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 750



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 1/162 (0%)

Query: 9    CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
            CT  +NI+LNG      T+    +F+ +   G  P++ +Y I+I  LCKAG+L       
Sbjct: 1020 CT-IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYF 1078

Query: 69   KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
            ++L + G  P+ ITY  ++    ++++ +  + + + M++KG   + + Y ++I    K 
Sbjct: 1079 RQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKA 1138

Query: 129  GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
            G+  EA    E+++T G + ++ +YN LI  Y   G  ++AY
Sbjct: 1139 GKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAY 1180



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 4/259 (1%)

Query: 51   LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
            LIK LCK  +   A  ++K+    G +     Y +++          +   + + MK  G
Sbjct: 851  LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 910

Query: 111  YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
               D F Y  ++ A  K  R++E     E+M   G +   V+YNT+I+   K  +LE A 
Sbjct: 911  CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 970

Query: 171  LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
             L   +  QGF     T+  L+DGL KAG I+ A      M + G  +N   YN +++  
Sbjct: 971  DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 1030

Query: 231  GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
               G  +   ++F+ M  +    D  +Y+ ++  LCKA +L          L+ G+    
Sbjct: 1031 RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDL 1090

Query: 287  SAQKAVVDGLRHSGCRREA 305
                 ++DGL  S    EA
Sbjct: 1091 ITYNLLIDGLGKSKRLEEA 1109



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%)

Query: 6    LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            L P   T+N++++GL K++  + A+ +F  +QK G VP L TYN LI  L KAG+   A 
Sbjct: 1086 LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAG 1145

Query: 66   WILKELGDSGHAPNAITYTTIMK 88
             + +EL   G  PN  TY  +++
Sbjct: 1146 KMYEELLTKGWKPNVFTYNALIR 1168


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 131/263 (49%), Gaps = 5/263 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   +FN  ++ L K    D AL +F  ++ HGF P LV+YN  I    +AG +  A 
Sbjct: 257 LRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAH 316

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-KGYTFDGFGYCTVIAA 124
            +L+E+      P++++Y T+M    +  ++K  LE+L+ MK   G   D   Y T +  
Sbjct: 317 ELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHV 376

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K GR + AT+ + + +  G+Q D+VSYNT+++   + G+   A  L   ME+ G   D
Sbjct: 377 CAKAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPD 436

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           + +    +    +A   + A   L  M       N+++Y   VD  G+ G+ + A+ + E
Sbjct: 437 RVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELME 496

Query: 245 SMEVK----DSFTYSSMVHNLCK 263
            MEV+    +  TY++ +   C+
Sbjct: 497 EMEVRGVPANVHTYTAAMDACCR 519



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 124/262 (47%), Gaps = 5/262 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCKAGRLRTARW 66
           P + ++N ++    K      AL +   +++  G  P+L++YN  +    KAGR   A  
Sbjct: 329 PDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATE 388

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L E    G  P+ ++Y T+M  C R  +Y   L++   M+  G   D   + T + A  
Sbjct: 389 LLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACN 448

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           +  + + A   + +M    +  ++ SY   ++   + G+ E A  L++EME +G   + +
Sbjct: 449 RALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVH 508

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T  +D  C+ G +    + LE M+  G + N+ +Y   +D + + GK D A  V E M
Sbjct: 509 TYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQM 568

Query: 247 EVK----DSFTYSSMVHNLCKA 264
             +    DS +Y + +    +A
Sbjct: 569 VQRGLRLDSVSYRTALSTAGRA 590



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 108/229 (47%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++N  ++   K    + A  +       G  P++V+YN ++    +AG    A 
Sbjct: 363 VDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQAL 422

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + + G AP+ +++ T M  C R  K++  L+IL  M+ +    +   Y   + A 
Sbjct: 423 DLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDAC 482

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G  + A + ME+M   GV  ++ +Y   ++  C+ G ++   +LL+EM+ +G E + 
Sbjct: 483 GRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNV 542

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            ++TI +D + + G    A   LE M + G   +  +Y   +   G+ G
Sbjct: 543 VSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDSVSYRTALSTAGRAG 591



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 118/236 (50%), Gaps = 5/236 (2%)

Query: 44  ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103
           ++V + + IK   +A R R A  +L+E+   G  P+ +++ T M    +  +Y L LE+ 
Sbjct: 225 DVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELF 284

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
           + ++  G+  +   Y T I A  + G +  A + + +M    V+ D VSYNT++  + K+
Sbjct: 285 TEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKK 344

Query: 164 GKLEAAYLLLDEM-EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
            + +AA  LL EM E  G + D  ++   +    KAG  + A   L      G   ++ +
Sbjct: 345 NQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVS 404

Query: 223 YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           YN ++   G+ G+   A+++F  ME      D  ++++ +H   +A +  +A ++L
Sbjct: 405 YNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQIL 460



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 100/201 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N +++   +      AL +F  +++ G  P+ V++N  +    +A + + A 
Sbjct: 398 LQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAAL 457

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            IL+E+     APN  +YT  +  C R  +++  LE++  M+ +G   +   Y   + A 
Sbjct: 458 QILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDAC 517

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G +      +E+M   GV+ ++VSY   ++   + GK + A  +L++M ++G   D 
Sbjct: 518 CRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDS 577

Query: 186 YTHTILIDGLCKAGNIKGARL 206
            ++   +    +AG+ +G RL
Sbjct: 578 VSYRTALSTAGRAGDEEGERL 598



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +++D+V +   I    +  +   A  +L EM+ +G   D  +    +D L KAG      
Sbjct: 222 IEVDVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYD--- 278

Query: 206 LHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 258
           L LE   +I   GF  NL +YN  +   G+ G +D A  +   M+      DS +Y++++
Sbjct: 279 LALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVM 338

Query: 259 HNLCKAKRLPSASKLL 274
               K  +  +A +LL
Sbjct: 339 AAFAKKNQWKAALELL 354


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 155/339 (45%), Gaps = 37/339 (10%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ---KHGFV-PELVTYNILIKGLCKAGRL 61
           L P   TFN  ++ LCK     +A R+F+ +Q   +HG   P+ VT+++++ G C AG +
Sbjct: 238 LAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFV 297

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             AR ++  +   G      +Y   +    RN +     E+L  M  +G   + + Y  +
Sbjct: 298 DEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNII 357

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++   K G+  +A   +E  +  GV   D+V+Y +L++ YC +G + AA  +LDEM ++G
Sbjct: 358 VSGLCKEGKAFDAR-RVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKG 416

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              + +T+ +L+  L +AG    A   LE MN+ G+  +    N I+D L ++ ++D A+
Sbjct: 417 CAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAM 476

Query: 241 NVFESME---------------------------VKDSFTYSSMVHNLCKAKRLPSASKL 273
           ++ + M                            + D  TYS ++  LCK  R   A K 
Sbjct: 477 DIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKK 536

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           LL  +   +    S    + D   H  C+     +  K+
Sbjct: 537 LLEMIVKDI----SPDSVIYDTFIHGYCKHGKTSLAIKV 571



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 154/337 (45%), Gaps = 42/337 (12%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-----------------------VPELV 46
           TA  NI+++GLC+N   D A+ +  G+ + G                        +P+ +
Sbjct: 456 TAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQI 515

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           TY+ILI  LCK GR   A+  L E+     +P+++ Y T +    ++ K  L +++L  M
Sbjct: 516 TYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDM 575

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166
           ++KG       Y  +I  F +  + +E    M +M   G+  ++++YN+LI  +C++G +
Sbjct: 576 EKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMV 635

Query: 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL------ 220
             A  LLDEM +     +  +  +LI   CK  +   A++         FD+ L      
Sbjct: 636 NKAMPLLDEMLQNELVPNITSFDLLIKAYCKITDFPSAQMV--------FDAALRTCGQK 687

Query: 221 EAYNCIV-DRLGKDGKIDHAINVFE-SMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 275
           E   C++   L   GK   A N+ E ++E++    SF Y  ++  LC+   +  A  LL 
Sbjct: 688 EVLYCLMCTELTTYGKWIEAKNILEMALEMRVSIQSFPYKQIISGLCEVGEVDHAHSLLK 747

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             +        +A   V+D L   G +++   + +K+
Sbjct: 748 LLIAKRHLFDPAAFMPVIDALGDRGKKQDVDMLSAKM 784



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 114/272 (41%), Gaps = 23/272 (8%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M CG       ++N  L+GL +N     A  + R +   G  P   TYNI++ GLCK G+
Sbjct: 307 MRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGK 366

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              AR +   +     +P+ +TYT+++              IL  M +KG   + F Y  
Sbjct: 367 AFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNV 426

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ +  + GR  EA   +E+M   G  LD    N +I+  C+  +L+ A  ++D M ++G
Sbjct: 427 LLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEG 486

Query: 181 FEC-----------------------DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
                                     D+ T++ILI  LCK G    A+  L  M      
Sbjct: 487 SGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDIS 546

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            +   Y+  +    K GK   AI V   ME K
Sbjct: 547 PDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKK 578



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 130/266 (48%), Gaps = 18/266 (6%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P T  +N ++    +    D    +++ L   G  P++ T N+L++ LC AGR+  A+ 
Sbjct: 107 PPTTPVYNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQR 166

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC-TVIAAF 125
           +     D+  A N  ++  + +   R  +    L++L  M            C TV+A F
Sbjct: 167 VF----DAMPARNEFSFGILARGYCRAGRSIDALKVLDGMPSMNLVV-----CNTVVAGF 217

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME---KQGFE 182
            K G ++EA   +E+M   G+  ++V++N  I+  CK G++  AY +  +M+   + G  
Sbjct: 218 CKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLP 277

Query: 183 -CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D+ T  +++ G C AG +  AR+ ++ M   GF   +E+YN  +  L ++G++  A  
Sbjct: 278 RPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQE 337

Query: 242 VFESME----VKDSFTYSSMVHNLCK 263
           +   M       +S+TY+ +V  LCK
Sbjct: 338 LLREMAHEGIQPNSYTYNIIVSGLCK 363



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 11/237 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++I+++ LCK    D A +    +      P+ V Y+  I G CK G+   A  +
Sbjct: 512 PDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKV 571

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+++   G  P+  TY  +++      K +  ++++S MK KG + +   Y ++I +F +
Sbjct: 572 LRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQ 631

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM-----EKQGFE 182
            G + +A   +++M+ + +  +I S++ LI  YCK     +A ++ D       +K+   
Sbjct: 632 QGMVNKAMPLLDEMLQNELVPNITSFDLLIKAYCKITDFPSAQMVFDAALRTCGQKEVLY 691

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           C   T         +A NI    L +    ++   S    Y  I+  L + G++DHA
Sbjct: 692 CLMCTELTTYGKWIEAKNI----LEMALEMRVSIQSF--PYKQIISGLCEVGEVDHA 742



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 13/241 (5%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  D++P +  ++  ++G CK+  T  A+++ R ++K G  P   TYN+LI+G  +  +
Sbjct: 540 MIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHK 599

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ E+ + G +PN +TY +++K   +       + +L  M +     +   +  
Sbjct: 600 SEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVPNITSFDL 659

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE----GKLEAAYLLLDEM 176
           +I A+ KI     A     QMV D           L  L C E    GK   A  +L+  
Sbjct: 660 LIKAYCKITDFPSA-----QMVFDAALRTCGQKEVLYCLMCTELTTYGKWIEAKNILEMA 714

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGAR--LHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234
            +       + +  +I GLC+ G +  A   L L    +  FD    A+  ++D LG  G
Sbjct: 715 LEMRVSIQSFPYKQIISGLCEVGEVDHAHSLLKLLIAKRHLFDP--AAFMPVIDALGDRG 772

Query: 235 K 235
           K
Sbjct: 773 K 773


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 149/304 (49%), Gaps = 4/304 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N ++NG CK+     A  +   ++K    P + T+N L++GLC+ G+
Sbjct: 362 MVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK 421

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +LK + D+G +P+ ++Y  ++    R        ++LS+M       D   +  
Sbjct: 422 PYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTA 481

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I AF K G+   A+ ++  M+  G+ LD V+  TLI+  CK GK   A  +L+ + K  
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMR 541

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
                ++  +++D L K   +K     L  +NK+G   ++  Y  +VD L + G I  + 
Sbjct: 542 ILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSF 601

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            + E M++     + + Y+ +++ LC+  R+  A KLL +   SGV         +V G 
Sbjct: 602 RILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGY 661

Query: 297 RHSG 300
            ++G
Sbjct: 662 VNNG 665



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 6/316 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+ ++++GLC++   + A  + R + K    P ++TYN LI G CK GR+  A  +
Sbjct: 334 PNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFEL 393

Query: 68  LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           L  +      PN  T+  +M+  C   + YK  + +L  M   G + D   Y  +I    
Sbjct: 394 LTVMEKRACKPNVRTFNELMEGLCRVGKPYK-AVHLLKRMLDNGLSPDIVSYNVLIDGLC 452

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           + G +  A   +  M    ++ D +++  +IN +CK+GK + A   L  M ++G   D+ 
Sbjct: 453 REGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEV 512

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T T LIDG+CK G  + A   LE + K+   +   + N I+D L K  K+   + +   +
Sbjct: 513 TGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKI 572

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
                V    TY+++V  L ++  +  + ++L     SG          +++GL   G  
Sbjct: 573 NKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRV 632

Query: 303 REAKKIQSKIRMAKIS 318
            EA+K+ S ++ + +S
Sbjct: 633 EEAEKLLSAMQDSGVS 648



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 143/293 (48%), Gaps = 4/293 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++ GLC+      A+ + + +  +G  P++V+YN+LI GLC+ G + TA  +
Sbjct: 404 PNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKL 463

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L  +      P+ +T+T I+    +  K  +    L  M RKG + D     T+I    K
Sbjct: 464 LSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCK 523

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+ ++A   +E +V   +     S N ++++  K  K++    +L ++ K G      T
Sbjct: 524 VGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVT 583

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +T L+DGL ++G+I G+   LE M   G   N+  Y  I++ L + G+++ A  +  +M+
Sbjct: 584 YTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQ 643

Query: 248 ----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                 +  TY+ MV       +L  A + + + ++ G  +      +++ G 
Sbjct: 644 DSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGF 696



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 143/310 (46%), Gaps = 8/310 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           PC   ++ +L  L K      A   +R ++  GFV  ++ Y  ++  LCK G    A   
Sbjct: 161 PC---YSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMF 217

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFV 126
           + ++   G   ++   T+++    R    +  L++   M ++     +   Y  +I    
Sbjct: 218 MSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLC 277

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           ++GRL+EA    +QM   G Q    +Y  LI   C  G ++ A+ L DEM  +G + + +
Sbjct: 278 EVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVH 337

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+T+LIDGLC+ G I+ A      M K     ++  YN +++   KDG++  A  +   M
Sbjct: 338 TYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVM 397

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302
           E +    +  T++ ++  LC+  +   A  LL   L +G+     +   ++DGL   G  
Sbjct: 398 EKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHM 457

Query: 303 REAKKIQSKI 312
             A K+ S +
Sbjct: 458 NTAYKLLSSM 467



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 25/255 (9%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++GL ++     + R+   ++  G +P +  Y I+I GLC+ GR+  A 
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAE 636

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L  + DSG +PN +TYT ++K    N K    LE + AM  +GY  +   Y +++  F
Sbjct: 637 KLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGF 696

Query: 126 VKIGRLKEATDYMEQMVTDGVQL---DIVSYNTLINLY------------------CKEG 164
           V     ++  D  E+     + L   D    N LI++                   CKEG
Sbjct: 697 V---LSQKGIDNSEESTVSDIALRETDPECINELISVVEQLGGCISGLCIFLVTRLCKEG 753

Query: 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224
           + + +  L+  + ++G   +K    I+     K  + K   L +  + K GF  + +++ 
Sbjct: 754 RTDESNDLVQNVLERGVFLEKAMDIIMESYCSKKKHTKCMEL-ITLVLKSGFVPSFKSFC 812

Query: 225 CIVDRLGKDGKIDHA 239
            ++  L K+G  + A
Sbjct: 813 LVIQGLKKEGDAERA 827



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G +L+   Y++L+    K      AY+    ME  GF      +  +++ LCK G  + A
Sbjct: 155 GFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAA 214

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-----VKDSFTYSSMVH 259
            + +  + KIGF  +      ++    +   +  A+ VF+ M        +S +YS ++H
Sbjct: 215 EMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIH 274

Query: 260 NLCKAKRLPSA 270
            LC+  RL  A
Sbjct: 275 GLCEVGRLEEA 285


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 142/308 (46%), Gaps = 41/308 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   ++  ++  LC +R    A+ + R +Q  G  P++VTY  LI+GLC A  + TA  +
Sbjct: 92  PNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVEL 151

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+ +SG  PN + Y+ ++    +  +++   ++   M  +G   D   Y  +I +  +
Sbjct: 152 LNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCR 211

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G++K+A   M+ M   G++ ++V+YN LIN  CKEG +  A  L   M ++G + D  T
Sbjct: 212 HGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVT 271

Query: 188 HTILID-------------------------------------GLCKAGNIKGARLHLEY 210
           +  LI                                      GLCK G ++ A      
Sbjct: 272 YNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAM 331

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKR 266
           M + G   NL A+N ++  L +  K+  A+ + + M       DSFTYS +++  CK ++
Sbjct: 332 MAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQ 391

Query: 267 LPSASKLL 274
           +  A   L
Sbjct: 392 VERAESYL 399



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 144/278 (51%), Gaps = 9/278 (3%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDS---GHAPNAITYTTIMKCCFRNRKYKL 98
           V + V+YN ++  LC+ G L  A ++L+ +         PNAI+YTT+M+    +R+   
Sbjct: 53  VRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQ 112

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            + +L +M+  G   D   Y T+I        +  A + + +M   G++ ++V Y+ L++
Sbjct: 113 AVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLH 172

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            YCK G+ E+   + +EM  +G E D   +T LID LC+ G +K A   ++ M + G + 
Sbjct: 173 GYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEP 232

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           N+  YN +++ + K+G +  A+++ ++M  K    D  TY++++  L     +  A  LL
Sbjct: 233 NVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALL 292

Query: 275 LSCLKSGVRILKSAQ--KAVVDGLRHSGCRREAKKIQS 310
              ++   R+        +V+ GL   G  R+A ++++
Sbjct: 293 EEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRA 330



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 7/283 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +  +++ LC++     A R+   + + G  P +VTYN+LI  +CK G +R A 
Sbjct: 195 IEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREAL 254

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT---FDGFGYCTVI 122
            + K + + G  P+ +TY T++       +    + +L  M  +G T    D   + +VI
Sbjct: 255 DLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMM-QGETRVRPDLMTFNSVI 313

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               KIG +++A      M  +G + ++V++N LI    +  K++ A  L+DEM   G +
Sbjct: 314 HGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQ 373

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D +T++ILI+G CK   ++ A  +L  M   G +     Y  ++  +   G +  A ++
Sbjct: 374 PDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDL 433

Query: 243 FESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           F  M+     D+  YS+M+H   K+     A + L   +  G+
Sbjct: 434 FNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGL 476



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 122/243 (50%), Gaps = 1/243 (0%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN +++GLCK  +   AL++   + ++G    LV +N+LI GL +  +++ A  +
Sbjct: 304 PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMEL 363

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + E+  SG  P++ TY+ ++    + R+ +     LS M+ +G   +   Y  ++ A   
Sbjct: 364 MDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCD 423

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G + +A D   +M     +LD  +Y+T+I+   K G+ + A   L +M  +G   D  T
Sbjct: 424 QGMMGQARDLFNEM-DRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVT 482

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           ++I I+   K+G++  A   L+ M   GF  ++  ++ ++   G  G  +  + +   M 
Sbjct: 483 YSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMT 542

Query: 248 VKD 250
            KD
Sbjct: 543 AKD 545



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 7/260 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRT 63
           + P   T+N ++ GL      D A+ +   + +      P+L+T+N +I GLCK G +R 
Sbjct: 265 VQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQ 324

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +   + ++G   N + +  ++    R  K K  +E++  M   G   D F Y  +I 
Sbjct: 325 ALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILIN 384

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F K+ +++ A  Y+ +M   G++ + V Y  L+   C +G +  A  L +EM++   + 
Sbjct: 385 GFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRN-CKL 443

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D   ++ +I G  K+G  K A   L+ M   G   +   Y+  ++   K G +  A  V 
Sbjct: 444 DAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVL 503

Query: 244 ESME----VKDSFTYSSMVH 259
           + M     V D   + S++ 
Sbjct: 504 KQMTASGFVPDVAVFDSLIQ 523



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 6/226 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    L P + T++I++NG CK R  + A      ++  G  PE V Y  L+K +C  G 
Sbjct: 367 MASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGM 426

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR +  E+ D     +A  Y+T++   F++ + K+  E L  M  +G   D   Y  
Sbjct: 427 MGQARDLFNEM-DRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSI 485

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I  F K G L  A   ++QM   G   D+  +++LI  Y  +G  E    L  EM  + 
Sbjct: 486 PINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKD 545

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
              D    + ++  L    +I+G +L     +  GFD+ +   + I
Sbjct: 546 VALDPKIISTIVTSL--GASIEGQKL---LQSLPGFDTEISKGDVI 586


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 154/317 (48%), Gaps = 10/317 (3%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
            + FN +L+ LCK+R    A  +F  ++   F P++ +Y IL++G  +   L     + +
Sbjct: 225 VSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYR 284

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+ D G  P+ +T+  ++    + RKY   + +   M+ K        +CT+I       
Sbjct: 285 EMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEK 344

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           RLKEA ++ EQ+   G   +  +YN ++  YC   K+  AY ++DEM K G   +  T+ 
Sbjct: 345 RLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYD 404

Query: 190 ILIDGLCKAGNIKGARLHLEYMNK-IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           I++  L K    K A    + M++  G +  L  Y+ ++     + ++D AI +++ M+ 
Sbjct: 405 IILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKA 464

Query: 249 KDSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVR----ILKSAQKAVVDGLRHSG 300
           K        +S+++++LC   +L  A       L  G+R    +  + ++A++D  R   
Sbjct: 465 KGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDT 524

Query: 301 CRREAKKIQSKIRMAKI 317
               A+KI+ K+R A +
Sbjct: 525 ALLMAEKIK-KLRKAPL 540



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 114/261 (43%), Gaps = 5/261 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T ++N+++  L K +  +    +   +++ G +    T+ ++ +   +A +++ A    +
Sbjct: 156 TESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSR-ETFALITRRYARARKVKEAVESFE 214

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           ++   G       +  ++    ++R  K   E+   MK   +  D   Y  ++  + +  
Sbjct: 215 KMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQ 274

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            L +  +   +M  +G + D+V++  LIN +CK  K + A  L  EME +  +   +   
Sbjct: 275 NLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFC 334

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV- 248
            LI+GL     +K A    E +   GF      YN +V       K+ +A  + + M   
Sbjct: 335 TLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKS 394

Query: 249 ---KDSFTYSSMVHNLCKAKR 266
               +S TY  ++H+L K ++
Sbjct: 395 GVGPNSRTYDIILHHLIKGRK 415



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 40/79 (50%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  +T++IM+   C     D A++++  ++  G +P +  ++ LI  LC   +L  A   
Sbjct: 434 PTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTY 493

Query: 68  LKELGDSGHAPNAITYTTI 86
            +E+ D G  P A  ++ +
Sbjct: 494 FQEMLDVGIRPPATMFSNL 512


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 5/298 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TF+I++N   +      A  +   + K GF  ++     L+KGLC  GR+  A  +
Sbjct: 103 PSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSL 162

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E  D G   + + Y TI+    +  K +  +++   MK+     +   Y TVI    K
Sbjct: 163 LHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCK 222

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKY 186
            G + EA     +MV +G++LD+ SYN++I+ +C  G+ +AA  LLDEM  +G    D Y
Sbjct: 223 QGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVY 282

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T  ILIDGLCK G +  A   +  M K G+  ++ +YN +++     G +  A  VF+ M
Sbjct: 283 TFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKM 342

Query: 247 ----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
                + +  +Y ++++  CK + +  A  LL       +         ++DGL  SG
Sbjct: 343 VERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSG 400



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 154/301 (51%), Gaps = 5/301 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +  ++NGLCK   T +A++MF  ++K    P L+ YN +I GLCK G +  A  +  E+ 
Sbjct: 178 YGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMV 237

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRL 131
           ++G   +  +Y +++       +++  +++L  M  +G  + D + +  +I    K+GR+
Sbjct: 238 ENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRV 297

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA + +  M+  G + DIVSYN L+N YC  G +  A  + D+M ++    +  ++  L
Sbjct: 298 SEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTL 357

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----E 247
           I+G CK   +  A + L  M+      +   YNC++D L K G+  +  ++ E+M    +
Sbjct: 358 INGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQ 417

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             D  TY+ ++ +  K ++   A  L    ++ G+         ++DGL  SG  + AK+
Sbjct: 418 PADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKE 477

Query: 308 I 308
           I
Sbjct: 478 I 478



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 120/236 (50%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G + P   TFNI+++GLCK      A  +   + K G+ P++V+YN L+ G C +G +  
Sbjct: 275 GKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGE 334

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A+ +  ++ +    PN I+Y T++    + R     + +L+ M  K    D   Y  ++ 
Sbjct: 335 AKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLD 394

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
              K GR     D +E M   G   D+++YN L++ Y K  K + A  L   + + G   
Sbjct: 395 GLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISP 454

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           +  T+ IL+DGLCK+G +K A+   + ++  G   N+  YN ++  L K+G +D A
Sbjct: 455 NIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEA 510



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 5/268 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARWILKE 70
           ++N M++G C       A+++   +   G V P++ T+NILI GLCK GR+  A  ++  
Sbjct: 247 SYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAV 306

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           +   G  P+ ++Y  +M     +       ++   M  +    +   YCT+I  + K+  
Sbjct: 307 MIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRM 366

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + EA   + +M    +  D V+YN L++   K G+    + L++ M   G   D  T+ +
Sbjct: 367 VDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNV 426

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249
           L+D   K      A    +++ +IG   N+  YN ++D L K G++ +A  +F+ +  K 
Sbjct: 427 LLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKG 486

Query: 250 ---DSFTYSSMVHNLCKAKRLPSASKLL 274
              +  TY+ M+H LCK   L  A  LL
Sbjct: 487 CQPNIRTYNIMIHGLCKEGFLDEAEALL 514



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 33/302 (10%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           FN +L+ L K +  +  + ++  LQ K    P L+T++ILI    + G++  A  +L  +
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 72  GDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
              G   +    TT+MK  C + R  +  + +L     +G+ FD   Y T+I    KIG+
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLE-AVSLLHEYVDRGFRFDEVCYGTIINGLCKIGK 190

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
            ++A     +M    V  +++ YNT+I+  CK+G ++ A  L  EM + G E D Y++  
Sbjct: 191 TRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNS 250

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           +I G C  G  + A                     ++D +   GK+             D
Sbjct: 251 MIHGFCSVGRFQAAV-------------------KLLDEMVVRGKV-----------YPD 280

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
            +T++ ++  LCK  R+  A  ++   +K G +    +  A+++G   SG   EAK++  
Sbjct: 281 VYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFD 340

Query: 311 KI 312
           K+
Sbjct: 341 KM 342



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 52/83 (62%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+NI+L+GLCK+     A  +F+ L   G  P + TYNI+I GLCK G L  A 
Sbjct: 452 ISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAE 511

Query: 66  WILKELGDSGHAPNAITYTTIMK 88
            +L ++ ++ + PN IT+ TI++
Sbjct: 512 ALLYKMVNNNYLPNYITFDTIVR 534



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 29/48 (60%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 55
           P   T+NIM++GLCK  + D A  +   +  + ++P  +T++ +++ +
Sbjct: 489 PNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAI 536


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 144/293 (49%), Gaps = 15/293 (5%)

Query: 2   ICGD--LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           +CG   +TP T TFNI++ G CKN   D   R F+ + +    P++VTYN L+ GLC+AG
Sbjct: 158 MCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAG 217

Query: 60  RLRTARWILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
           ++R A  ++K +       +P+ +TYTT+++     ++    L +   M  +G   +   
Sbjct: 218 KVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDIT 277

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           Y T+I    ++ +  +  + +   V   G   D  +YNTL+N  C  G  + A  +  +M
Sbjct: 278 YNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKM 337

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN-------KIGFDSNLEAYNCIVDR 229
           ++   + D  T+++LI  LC+ G+ + A    + ++         G    + AYN I D 
Sbjct: 338 KELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDF 397

Query: 230 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           L K+GK   A  VF  +  K   D  +Y +++   CK     +  KLLL  L+
Sbjct: 398 LCKNGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLR 450



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 145/340 (42%), Gaps = 45/340 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRG-LQKHGFVPELVTYNILIKGLCKAG 59
           M+   L P   T+N ++ GLC+ +  D    +  G +   GFVP+  TYN L+   C AG
Sbjct: 266 MVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAG 325

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
               A  + K++ +    P++ TY+ +++   +   ++   ++   +  +       G  
Sbjct: 326 NFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCT 385

Query: 120 TVIAAFVKI-------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
            ++AA+  I       G+  +A     Q++  G Q D  SY TLI  +CKEG  EA Y L
Sbjct: 386 PLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQ-DPPSYKTLIIGHCKEGTFEAGYKL 444

Query: 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
           L  M ++ +  D  T+ +LI+G  + G    A   LE M K  +      ++ I+  L K
Sbjct: 445 LLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLK 504

Query: 233 ---------------DGKIDHAINV-----------------FESMEVKDSFTY----SS 256
                          D KI   IN+                 F+ +E+     Y      
Sbjct: 505 NDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLYDNGYMVDMEE 564

Query: 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++  +C+  +L  A K+L  CL+ G  +  +    V++GL
Sbjct: 565 LIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGL 604



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 10/256 (3%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY---TT 85
           A   F    ++GF  +  +Y +++  L + G L  AR  L  +    +    I      T
Sbjct: 43  AFEFFNWASRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFCNT 102

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV-TD 144
           +++       +   +++ S MK  G +     + +++   +K GR   A    ++M  T 
Sbjct: 103 LLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTY 162

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           GV  D  ++N LI  +CK   ++  +    EM +   E D  T+  L+DGLC+AG ++ A
Sbjct: 163 GVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIA 222

Query: 205 RLHLEYMNKIGFD--SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMV 258
              ++ M K   D   ++  Y  +V       +ID A+ VFE M  +    +  TY++++
Sbjct: 223 HNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLI 282

Query: 259 HNLCKAKRLPSASKLL 274
             LC+ ++     ++L
Sbjct: 283 KGLCEVQKFDKIKEIL 298



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 33/251 (13%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL-GDSGHAPNAITYTT 85
           + A+++F  ++  G  P ++T+N L+  L K GR   A  +  E+ G  G  P+  T+  
Sbjct: 114 NEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNI 173

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +++   +N     G      M R     D   Y T++    + G+++ A + ++ MV   
Sbjct: 174 LIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKM 233

Query: 146 VQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203
             L  D+V+Y TL+  YC + +++ A ++ +EM  +G + +  T+  LI GLC+      
Sbjct: 234 KDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQK--- 290

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCK 263
                       FD   E     V   G                V D+ TY+++++  C 
Sbjct: 291 ------------FDKIKEILGGAVGGRGF---------------VPDTCTYNTLMNAQCD 323

Query: 264 AKRLPSASKLL 274
           A     A K+ 
Sbjct: 324 AGNFDEALKMF 334



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 33/223 (14%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP  A +N + + LCKN  T  A R+FR L K G   +  +Y  LI G CK G       
Sbjct: 385 TPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKG-TQDPPSYKTLIIGHCKEGTFEAGYK 443

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  +    + P+  TY  ++    +  +  L  + L  M +  Y      + ++++  +
Sbjct: 444 LLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELL 503

Query: 127 KIGRLKEATDYMEQMVTDGVQLDI--------------------------------VSYN 154
           K    +E+  ++  M+   ++ +I                                V   
Sbjct: 504 KNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLYDNGYMVDME 563

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
            LI   C+ GKL  A  +L    ++G   D     ++I+GLCK
Sbjct: 564 ELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCK 606


>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g13040, mitochondrial; Flags: Precursor
 gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
 gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 5/279 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKAG 59
           MI   ++P       ++ GLC  R  D A  M     K   V    V YN LI G CKAG
Sbjct: 175 MIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAG 234

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           R+  A  +   +   G  P+ +TY  ++   + N   K    +++ M R G   D + Y 
Sbjct: 235 RIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYN 294

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++    ++    +  ++M + +      D+VSY+TLI  +C+      AY L +EM ++
Sbjct: 295 QLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQK 354

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G   +  T+T LI    + GN   A+  L+ M ++G   +   Y  I+D L K G +D A
Sbjct: 355 GMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKA 414

Query: 240 INVFESM---EV-KDSFTYSSMVHNLCKAKRLPSASKLL 274
             VF  M   E+  D+ +Y+S++  LC++ R+  A KL 
Sbjct: 415 YGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLF 453



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 147/301 (48%), Gaps = 10/301 (3%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N +++G CK    + A  +   + K G  P+LVTYN+L+        L+ A  ++ 
Sbjct: 220 TVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMA 279

Query: 70  ELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
           E+  SG   +A +Y  ++K  C  +   K    ++  M+ +G+  D   Y T+I  F + 
Sbjct: 280 EMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFC-DVVSYSTLIETFCRA 338

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
              ++A    E+M   G+ +++V+Y +LI  + +EG    A  LLD+M + G   D+  +
Sbjct: 339 SNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFY 398

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           T ++D LCK+GN+  A      M +     +  +YN ++  L + G++  AI +FE M+ 
Sbjct: 399 TTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKG 458

Query: 249 K----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           K    D  T+  ++  L + K+L +A K+    +  G  +     + V D L  + C   
Sbjct: 459 KECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTL----DRDVSDTLIKASCSMS 514

Query: 305 A 305
           A
Sbjct: 515 A 515



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 5/257 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N  +  L +    + A  ++  ++  GF     TY+  I GLCK  +      +L ++ 
Sbjct: 47  YNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDME 106

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
             G  P+   +   +    R  K    ++    M ++G   D   Y  +I    + G++ 
Sbjct: 107 TLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVT 166

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY-LLLDEMEKQGFECDKYTHTIL 191
           +A +    M+  GV  D  +   L+   C   K++ AY ++ +E++    +     +  L
Sbjct: 167 DAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNAL 226

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I G CKAG I+ A     YM+KIG + +L  YN +++    +  +  A  V   M     
Sbjct: 227 ISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGI 286

Query: 250 --DSFTYSSMVHNLCKA 264
             D+++Y+ ++   C+ 
Sbjct: 287 QLDAYSYNQLLKRHCRV 303



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 5/233 (2%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
           + Y   I  L K+G +  A  +  E+  S +   +  Y   +    R  +++L   I   
Sbjct: 10  LAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWD 69

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           MK  G++   F Y   I+   K+ +       +  M T G   DI ++N  ++L C+E K
Sbjct: 70  MKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENK 129

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           +  A      M ++G E D  ++TILI+GL +AG +  A      M + G   + +A   
Sbjct: 130 VGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAA 189

Query: 226 IVDRLGKDGKIDHAINV----FESMEVK-DSFTYSSMVHNLCKAKRLPSASKL 273
           +V  L    K+D A  +     +S  VK  +  Y++++   CKA R+  A  L
Sbjct: 190 LVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEAL 242



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P    +  +L+ LCK+   D A  +F  + +H   P+ ++YN LI GLC++GR+  A 
Sbjct: 391 LSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAI 450

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
            + +++      P+ +T+  I+    R +K     ++   M  KG+T D
Sbjct: 451 KLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLD 499



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 47/88 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  ++TP   ++N +++GLC++     A+++F  ++     P+ +T+  +I GL +  +
Sbjct: 421 MIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKK 480

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
           L  A  +  ++ D G   +     T++K
Sbjct: 481 LSAAYKVWDQMMDKGFTLDRDVSDTLIK 508


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 21/321 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P T+T++ +L  LC     + A  +F  +++ G V ++ TY I++   CKAG 
Sbjct: 474 MIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 533

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  AR    E+ + G  PN +TYT ++    + +K     E+   M  +G   +   Y  
Sbjct: 534 IEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSA 593

Query: 121 VIAAFVKIGRLKEATDYMEQM-----VTD------------GVQLDIVSYNTLINLYCKE 163
           +I    K G++++A    E+M     V D              + ++V Y  L++ +CK 
Sbjct: 594 LIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKL 653

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
            ++E A  LLD M  +G E ++  +  LIDGLCK G +  A+     M++ GF + L  Y
Sbjct: 654 HRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTY 713

Query: 224 NCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279
           + ++DR  K  + D A  V   M       +   Y+ M+  LCK  +   A KL+    +
Sbjct: 714 SSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEE 773

Query: 280 SGVRILKSAQKAVVDGLRHSG 300
            G +       A++DG    G
Sbjct: 774 KGCQPNVVTYTAMIDGFGRIG 794



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 124/277 (44%), Gaps = 10/277 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T++ +L G    +      R+   +   G  P    +N L+   C +G    A  +
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394

Query: 68  LKELGDSGHAPNAITYTTIM------KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
           LK++   GH P  + Y  ++      K        +L  +  S M   G   +     + 
Sbjct: 395 LKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSF 454

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
                  G+ ++A   + +M+  G   D  +Y+ ++   C   K+E A+LL +EM++ G 
Sbjct: 455 TRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGL 514

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D YT+TI++D  CKAG I+ AR     M ++G   N+  Y  ++    K  K+ +A  
Sbjct: 515 VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANE 574

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
           +FE+M     + +  TYS+++   CKA ++  A ++ 
Sbjct: 575 LFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIF 611



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 21/311 (6%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+  +++   K +    A  +F  +   G +P +VTY+ LI G CKAG++  A  
Sbjct: 550 TPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQ 609

Query: 67  ILKEL-----------------GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109
           I + +                  D+   PN + Y  ++    +  + +   ++L AM  +
Sbjct: 610 IFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSME 669

Query: 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169
           G   +   Y  +I    K+G+L EA +   +M   G    + +Y++LI+ Y K  + + A
Sbjct: 670 GCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLA 729

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
             +L +M +     +   +T +IDGLCK G    A   ++ M + G   N+  Y  ++D 
Sbjct: 730 SKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDG 789

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
            G+ GKI+  + + E M  K    +  TY  ++ + CK   L  A  LL    ++     
Sbjct: 790 FGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTH 849

Query: 286 KSAQKAVVDGL 296
            +  + V++G 
Sbjct: 850 AAGYRKVIEGF 860



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    ++ +++GLCK    D A  +   + +HGF   L TY+ LI    K  R   A  +
Sbjct: 673 PNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 732

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++ ++  APN + YT ++    +  K     +++  M+ KG   +   Y  +I  F +
Sbjct: 733 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGR 792

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           IG+++   + +E+M + GV  + V+Y  LI+  CK G L+ A+ LL+EM++  +      
Sbjct: 793 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAG 852

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVDRLGKDGKIDHAINVFE 244
           +  +I+G  K   I+   L    +++IG D     L  Y  +VD L K  +++ A+ + E
Sbjct: 853 YRKVIEGFNKEF-IESLGL----LDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLE 907

Query: 245 SME------VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            +       V  S TY+S++ +LC A ++  A +L     K GV
Sbjct: 908 EVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGV 951



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 140/332 (42%), Gaps = 27/332 (8%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC------KAGRL 61
           P    FN +++  C +     A ++ + + K G  P  V YNILI  +C          L
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLL 429

Query: 62  RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
             A     E+  +G   N I  ++  +C     KY+    ++  M  +G+  D   Y  V
Sbjct: 430 ELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKV 489

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           +       +++ A    E+M   G+  D+ +Y  +++ +CK G +E A    +EM + G 
Sbjct: 490 LGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGC 549

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             +  T+T LI    KA  +  A    E M   G   N+  Y+ ++D   K G+++ A  
Sbjct: 550 TPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQ 609

Query: 242 VFESM---------------------EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280
           +FE M                     E  +   Y +++   CK  R+  A KLL +    
Sbjct: 610 IFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSME 669

Query: 281 GVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           G    +    A++DGL   G   EA+++++++
Sbjct: 670 GCEPNQIVYDALIDGLCKVGKLDEAQEVKAEM 701



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 4/242 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    +  M++GLCK   TD A ++ + +++ G  P +VTY  +I G  + G+
Sbjct: 736 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGK 795

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + T   +L+ +G  G APN +TY  ++  C +N    +   +L  MK+  +     GY  
Sbjct: 796 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRK 855

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI  F K     E+   ++++  D     +  Y  L++   K  +LE A  LL+E+    
Sbjct: 856 VIEGFNK--EFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFS 913

Query: 181 FECDKY--THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
                Y  T+  LI+ LC A  +  A      M+K G    ++ +  ++  L ++ KI  
Sbjct: 914 ATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISE 973

Query: 239 AI 240
           A+
Sbjct: 974 AL 975



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 144/339 (42%), Gaps = 48/339 (14%)

Query: 19  GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
            LCK      AL +   ++   FVP+ V Y  LI GLC+A     A   L  +  +   P
Sbjct: 279 SLCKVGKWREALTL---METENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGF--GYCT---------VI 122
           N +TY+T++  C   ++      +L+ M  +G       F+     YCT         ++
Sbjct: 336 NVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLL 395

Query: 123 AAFVKIGR-------------------------LKEATDYMEQMVTDGVQLDIVSYNTLI 157
              VK G                          L+ A     +M+  GV L+ ++ ++  
Sbjct: 396 KKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFT 455

Query: 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
              C  GK E A+ ++ EM  QGF  D  T++ ++  LC A  ++ A L  E M + G  
Sbjct: 456 RCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLV 515

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
           +++  Y  +VD   K G I+ A   F  M       +  TY++++H   KAK++  A++L
Sbjct: 516 ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANEL 575

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
             + L  G         A++DG   +G   +A +I  ++
Sbjct: 576 FETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERM 614



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 137/351 (39%), Gaps = 58/351 (16%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
            N+++   C++     AL     L+   F P   TYN LI+   KA  L +A  + +E+ 
Sbjct: 203 LNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMS 262

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            +    +  T       C+     K+G   E L+ M+ + +  D   Y  +I+   +   
Sbjct: 263 LANLRMDGFTLR-----CYAYSLCKVGKWREALTLMETENFVPDTVFYTKLISGLCEASL 317

Query: 131 LKEATDYMEQMVTDGVQLDIVSY-----------------------------------NT 155
            +EA D++ +M       ++V+Y                                   N+
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
           L++ YC  G    AY LL +M K G       + ILI  +C  G+      HL  + +  
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSIC--GDKDSLSCHLLELAEKA 435

Query: 216 FDSNLEAYNCIVDRLG---------KDGKIDHAINVFESM----EVKDSFTYSSMVHNLC 262
           + S + A   +++++            GK + A +V   M     + D+ TYS ++  LC
Sbjct: 436 Y-SEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLC 494

Query: 263 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
            A ++  A  L     + G+         +VD    +G   +A+K  +++R
Sbjct: 495 NASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
           ++T+N ++  LC     D A R+F  + K G +PE+ T+  LIKGL +  ++  A  +L
Sbjct: 920 SSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLL 978



 Score = 37.4 bits (85), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YN L++L  ++   +    LL ++     E       +L+   C++G+   A   L  + 
Sbjct: 168 YNALVDLIVRDDDEKVPEELLQQIRDDDKEVFGEFLNVLVRKYCRSGSFSIALEELGRLK 227

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 268
              F  +   YNC++    K   +D A  V   M +     D FT     ++LCK  +  
Sbjct: 228 DFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWR 287

Query: 269 SASKLL 274
            A  L+
Sbjct: 288 EALTLM 293


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 136/304 (44%), Gaps = 39/304 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F IM+ G C+N   D + ++   LQ  G  P +V Y  LI G CK G +  AR    ++
Sbjct: 164 SFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKM 223

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
           G+ G   N  T+T ++   F+    K G ++   MK  G   + + Y  ++  +   G++
Sbjct: 224 GEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKI 283

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A D  ++M   GV+ ++V+YNTLI   C+E ++  A  L+D+M+K     +  T+  L
Sbjct: 284 CRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTL 343

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG----------------- 234
           I G C  GN+  A   L+ +   G   +L  YN +++   K G                 
Sbjct: 344 IGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGI 403

Query: 235 ------------------KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
                             +++ A  ++ SME    V D + Y  ++H LC    +  +SK
Sbjct: 404 SPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSK 463

Query: 273 LLLS 276
           L  S
Sbjct: 464 LFRS 467



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF +++NGL K     +   +F  ++ +G  P L TYN L+   C  G++  A  +  E+
Sbjct: 234 TFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEM 293

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            + G   N +TY T++    R  +     +++  MK+   + +   Y T+I  F  +G L
Sbjct: 294 RERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNL 353

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A+  ++Q+ ++G+   +V+YN LI  Y K G  +    L  EME +G    K T T+L
Sbjct: 354 DKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVL 413

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES---MEV 248
           ID   +   ++ A      M K G   ++  Y  ++  L   G +  +  +F S   M V
Sbjct: 414 IDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHV 473

Query: 249 KDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + S   Y++M+H  CK      A +LL      G+    ++  +++  L   G   EA+ 
Sbjct: 474 EPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEV 533

Query: 308 IQSKI 312
           +  K+
Sbjct: 534 LLDKM 538



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 5/256 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L  L ++   + A   F  L K     ++ ++ I+IKG C+ G L  +  +L  L 
Sbjct: 131 FNSLLGSLVRSNCFEKAWLFFNEL-KERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQ 189

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D G +PN + YTT++  C +N   +        M   G   + + +  +I    K G  K
Sbjct: 190 DMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKK 249

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           +  D  E+M  +G+  ++ +YN L+N YC EGK+  A+ L DEM ++G E +  T+  LI
Sbjct: 250 DGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLI 309

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----V 248
            G+C+   +  A   ++ M K     NL  YN ++      G +D A ++ + ++     
Sbjct: 310 GGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLS 369

Query: 249 KDSFTYSSMVHNLCKA 264
               TY+ ++    KA
Sbjct: 370 PSLVTYNILIEGYSKA 385



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 111/221 (50%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           ++P   T+N ++ G C     D A  +   L+ +G  P LVTYNILI+G  KAG  +   
Sbjct: 333 VSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVA 392

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+   G +P+ +T T ++    R ++ +   +I S+M++ G   D + Y  +I   
Sbjct: 393 DLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGL 452

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G +KE++     M    V+   V YNT+I+ YCKE     A  LL EME +G   + 
Sbjct: 453 CMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNV 512

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
            +++ +I  LCK G  + A + L+ M ++    +    N I
Sbjct: 513 ASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMI 553



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 8/247 (3%)

Query: 43  PELVT---YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99
           P + T   Y  +I    K+  L  A     E+ D G       + +++    R+  ++  
Sbjct: 88  PSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKA 147

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
               + +K +   FD + +  +I    + G L ++   +  +   G+  ++V Y TLI+ 
Sbjct: 148 WLFFNELKER-VKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDG 206

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
            CK G +E A L  D+M + G   ++YT T+LI+GL K G  K      E M   G   N
Sbjct: 207 CCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPN 266

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLL 275
           L  YNC+++    +GKI  A ++F+ M  +    +  TY++++  +C+ +R+  A KL+ 
Sbjct: 267 LYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVD 326

Query: 276 SCLKSGV 282
              K+ V
Sbjct: 327 QMKKAAV 333



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N M++G CK   +  ALR+ R ++  G VP + +Y+ +I  LCK G+   A 
Sbjct: 473 VEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAE 532

Query: 66  WILKELGDSGHAPNAITYTTIMKC 89
            +L ++ +    P+A     I K 
Sbjct: 533 VLLDKMIELQLKPSASILNMISKA 556


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 138/305 (45%), Gaps = 5/305 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDN-ALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59
           M    L P   T+N +++   K     N A  +F  + ++G  P+ +T+N L+    + G
Sbjct: 246 MKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGG 305

Query: 60  RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
               AR +  E+   G   +  TY T++    +  +  L  +I+S M RK    +   Y 
Sbjct: 306 LWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYS 365

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           TVI  + K GRL EA +   +M    + LD VSYNTL+++Y K G+ E A  +  EME  
Sbjct: 366 TVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESS 425

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D  T+  L+ G  K G  +  +   E M       NL  Y+ ++D   K G    A
Sbjct: 426 GIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEA 485

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + VF   +      D   YS+++  LCK   + SA   L    K G+R       +++D 
Sbjct: 486 MEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDA 545

Query: 296 LRHSG 300
              SG
Sbjct: 546 FGRSG 550



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 119/230 (51%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N +L+ +CK    D A ++   + +   +P +VTY+ +I G  KAGRL  A  +  E+
Sbjct: 328 TYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEM 387

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +    + ++Y T++    +  +++  L +   M+  G   D   Y  ++  + K G+ 
Sbjct: 388 KFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKY 447

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           +E     E+M  + +  ++++Y+TLI++Y K G  + A  +  E +K G + D   ++ L
Sbjct: 448 EEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSAL 507

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           ID LCK G ++ A   L+ M K G   N+  YN I+D  G+ G  +  I+
Sbjct: 508 IDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVID 557



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 11/238 (4%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A  +F      G+   +  ++ LI    ++G    A  + + +  SG  PN +TY  ++ 
Sbjct: 204 AKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVID 263

Query: 89  CCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
            C +    +    EI   M R G   D   + +++A   + G  + A +   +M+  G++
Sbjct: 264 ACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIE 323

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207
            DI +YNTL++  CK G+++ A+ ++ EM ++    +  T++ +IDG  KAG +  A   
Sbjct: 324 QDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEA--- 380

Query: 208 LEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMV 258
           L   N++ F S   +  +YN ++    K G+ + A+NV + ME     KD+ TY++++
Sbjct: 381 LNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALL 438



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 98/197 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++ +++G  K    D AL +F  ++      + V+YN L+    K GR   A 
Sbjct: 357 IMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEAL 416

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + KE+  SG   +A+TY  ++    +  KY+    +   MK +    +   Y T+I  +
Sbjct: 417 NVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVY 476

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G  +EA +   +    G++ D+V Y+ LI+  CK G +E+A   LDEM K+G   + 
Sbjct: 477 SKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNV 536

Query: 186 YTHTILIDGLCKAGNIK 202
            T+  +ID   ++G+ +
Sbjct: 537 VTYNSIIDAFGRSGSAE 553



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 115/259 (44%), Gaps = 26/259 (10%)

Query: 66  WILKELGDSGHAPNAIT--YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           ++L+ELG+ G    AI      + +   RN + KL   ++S + R               
Sbjct: 153 FLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISILGR--------------- 197

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
               +G+++ A +  E  + +G    + +++ LI+ Y + G  + A  + + M+  G + 
Sbjct: 198 ----LGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKP 253

Query: 184 DKYTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
           +  T+  +ID   K G +   A    + M + G   +   +N ++   G+ G  + A N+
Sbjct: 254 NLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNL 313

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298
           F  M  +    D FTY++++  +CK  ++  A +++    +  +         V+DG   
Sbjct: 314 FSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAK 373

Query: 299 SGCRREAKKIQSKIRMAKI 317
           +G   EA  + ++++ A I
Sbjct: 374 AGRLDEALNLFNEMKFASI 392


>gi|356574119|ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 134/267 (50%), Gaps = 4/267 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P  A+F+I++NGL KN   D AL +F  +++    P ++ YN LI  LC + RL  +R +
Sbjct: 430 PNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESREL 489

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+ +SG  P   TY +I  C  + +     +++L  M+  G+         ++     
Sbjct: 490 LREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLLVKELCD 549

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G   EA ++++ MV  G   DIVSY+  I    +  +L  A  L  ++  +G   D   
Sbjct: 550 HGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVA 609

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             IL+ GLCKA  ++ A   L+ +   GF  ++  YN ++D   K+G +D A+ +   M 
Sbjct: 610 SNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRMS 669

Query: 248 VKDS----FTYSSMVHNLCKAKRLPSA 270
            +D      TYS++V   C+A+R   A
Sbjct: 670 GEDREPNVITYSTLVDGFCRAERPDDA 696



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 130/280 (46%), Gaps = 4/280 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +   LCK +    A+ M +G++  G  P +    +L+K LC  G    A 
Sbjct: 498 VEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLLVKELCDHGMAIEAC 557

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L  +   G  P+ ++Y+  +    + ++    L++ S +  +G+  D      ++   
Sbjct: 558 NFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILMRGL 617

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  R++EA   ++++V  G    +V+YN LI+ +CK G ++ A  LL  M  +  E + 
Sbjct: 618 CKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRMSGEDREPNV 677

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ L+DG C+A     A L    M + G   N  A+  ++  L K  +   A++    
Sbjct: 678 ITYSTLVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLRE 737

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           ME K    DSF Y +++ +      L SA ++    + SG
Sbjct: 738 MEQKDMKPDSFIYIALISSFLSDMDLASAFEIFKEMVYSG 777



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 109/248 (43%), Gaps = 5/248 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   +++  + GL + +  + AL++F  L   G  P++V  NIL++GLCKA R
Sbjct: 563 MVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYR 622

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +R A  +L E+   G  P+ +TY  ++    +N      + +LS M  +    +   Y T
Sbjct: 623 VREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRMSGEDREPNVITYST 682

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  F +  R  +A     +M   G   + +++  LI   CK  +   A   L EME++ 
Sbjct: 683 LVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLREMEQKD 742

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-----DSNLEAYNCIVDRLGKDGK 235
            + D + +  LI       ++  A    + M   G+     D N       +D+  KD +
Sbjct: 743 MKPDSFIYIALISSFLSDMDLASAFEIFKEMVYSGYFPESHDKNYSIVMDAIDKFSKDHR 802

Query: 236 IDHAINVF 243
               I V 
Sbjct: 803 TSSGIQVL 810



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 112/237 (47%), Gaps = 7/237 (2%)

Query: 5   DLTPCTAT---FNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAGR 60
           D  PC+ T      ++  L        A  +F  ++  G  VP    YN L++ L K+G 
Sbjct: 129 DSAPCSFTPGALGFLIRCLGHAGLAREAHHLFDEMRLKGLCVPNDYCYNCLLEALSKSGE 188

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +      L+E+   G   +  T T +++     R++   L + + M+ KG+  DG   C+
Sbjct: 189 VDLIEARLEEMKGFGWEFDKFTLTPLLQAYCNARRFDEALRVYNVMREKGWV-DGH-VCS 246

Query: 121 VIA-AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
           ++A +F K G + +A + +E+M   G++L+  ++  LI+ + KEG+++ A  L D M + 
Sbjct: 247 MLALSFSKWGDVDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRV 306

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           GF        +LI GLC+ G+   A   L  M + G   ++  +  ++      G I
Sbjct: 307 GFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIFTKLISAFPDRGVI 363



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 41  FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLG 99
           F P  + +  LI+ L  AG  R A  +  E+   G   PN   Y  +++   ++ +  L 
Sbjct: 135 FTPGALGF--LIRCLGHAGLAREAHHLFDEMRLKGLCVPNDYCYNCLLEALSKSGEVDLI 192

Query: 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159
              L  MK  G+ FD F    ++ A+    R  EA      M   G  +D    + L   
Sbjct: 193 EARLEEMKGFGWEFDKFTLTPLLQAYCNARRFDEALRVYNVMREKG-WVDGHVCSMLALS 251

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           + K G ++ A+ L++ ME  G   ++ T  +LI G  K G +  A    + M ++GF   
Sbjct: 252 FSKWGDVDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPP 311

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++ ++  L ++G    A+++   M+
Sbjct: 312 VSLFDVLIGGLCRNGDSHRALSLLSEMK 339



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 114/265 (43%), Gaps = 30/265 (11%)

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
            D A  +   ++ HG      T+ +LI G  K GR+  A  +   +   G  P    +  
Sbjct: 258 VDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDV 317

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK---IGRLKEATDYMEQMV 142
           ++    RN      L +LS MK  G T D   +  +I+AF     I +L E     E+  
Sbjct: 318 LIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIFTKLISAFPDRGVIAKLLEEVPGGEEER 377

Query: 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202
           T      ++ YN ++  Y  +G ++ A   L  M +      K +  + +DG        
Sbjct: 378 TL-----VLIYNAVLTCYVNDGLMDEACRFLRMMIQS-----KASGDVQMDGF------- 420

Query: 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMV 258
                   + K+ F  N  +++ +++ L K+ ++D A+++F  M    +      Y++++
Sbjct: 421 -----FNKVKKLVF-PNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLI 474

Query: 259 HNLCKAKRLPSASKLLLSCLKSGVR 283
           ++LC + RL  + +LL    +SGV 
Sbjct: 475 NSLCDSNRLEESRELLREMKESGVE 499


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 161/336 (47%), Gaps = 24/336 (7%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ--------------------KHG 40
           M+   L P  AT+  +++G C+N  TD A R+   +Q                      G
Sbjct: 360 MLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADG 419

Query: 41  FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 100
             P+++TY+ LI G+CK G +   + IL  +  SG  PN + YTT++    +    K  L
Sbjct: 420 IDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEAL 479

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
           +    + R G   +   +  ++ +F + G + EA  + + M    +  D+ S+N +I+ Y
Sbjct: 480 KYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSY 539

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220
           C+ G +  A+ + D M + G+  D  T+  L+ GLC+ G++  A+  + Y+ +     + 
Sbjct: 540 CQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDE 599

Query: 221 EAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLS 276
           +  N ++  + K G +D A+++ E M  +    D++TY+ ++   CK  ++  A  LL  
Sbjct: 600 KTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQM 659

Query: 277 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            L+ G+     A   +++GL + G  + A  +  +I
Sbjct: 660 MLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEI 695



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 59/357 (16%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +LN   K     +ALR+   ++K+G   +L TYNI+I  LCK  R   A  +
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK + +    P+  +Y T++   F   K  L + I + M R+        Y  +I  + +
Sbjct: 322 LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCR 381

Query: 128 IGRLKEATDYMEQM--------------------VTDGVQLDIVSYNTLINLYCKEGKLE 167
            GR  EA   + +M                    + DG+  D+++Y+ LIN  CK G + 
Sbjct: 382 NGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIH 441

Query: 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL------------------- 208
               +L  M+K G   +   +T L+   CKAG+ K A  +                    
Sbjct: 442 ETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALL 501

Query: 209 ----------------EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EV 248
                           +YM+++    ++ ++NCI+D   + G +  A +V+++M      
Sbjct: 502 CSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWP 561

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
            D  TY S++  LC+   L  A + ++  L+    I +     ++ G+   G   EA
Sbjct: 562 PDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEA 618



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 153/312 (49%), Gaps = 15/312 (4%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P T T+ I+L+G CK      AL + + + + G VP+ + Y  L+ GL   G+
Sbjct: 625 MVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQ 684

Query: 61  LRTARWILKE-LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           ++ A ++ +E +   G   + I Y ++M    +  +      ++  M           Y 
Sbjct: 685 VKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYN 744

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM--E 177
            ++  ++K G+L         MV +G++ D V+Y  LI   C+ G +E A   L++M  E
Sbjct: 745 ILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLE 804

Query: 178 KQGFECDKYTHTI-LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           + G +  K+TH I LI+  C+ G+I GA    E M  +G   +  A + IV  L K GK+
Sbjct: 805 ESGLQ-PKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKV 863

Query: 237 DHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSA---SKLLLSCLKSGVRILKSAQ 289
           + AI VF S+     V    T+++++H LCK  ++  A    +L+ SC   G+++     
Sbjct: 864 EEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESC---GLKVDVVTY 920

Query: 290 KAVVDGLRHSGC 301
             ++ GL +  C
Sbjct: 921 NVLITGLCNKKC 932



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 134/278 (48%), Gaps = 7/278 (2%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T N +L G+CK+   D AL +   +     +P+  TY IL+ G CK G++  A  +L+ +
Sbjct: 601 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMM 660

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-RKGYTFDGFGYCTVIAAFVKIGR 130
            + G  P+ I YT ++       + K    +   +  ++G   D   Y +++  ++K G+
Sbjct: 661 LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQ 720

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           + E    M  M  + V     SYN L++ Y K+G+L     L  +M K+G + D  T+ +
Sbjct: 721 INEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRL 780

Query: 191 LIDGLCKAGNIKGARLHLEYM--NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
           LI GLC+ G I+ A   LE M   + G       Y  +++   + G ID A  + E M+ 
Sbjct: 781 LIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKA 840

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
              V      SS+V  LCK  ++  A  +  S +++G+
Sbjct: 841 LGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGM 878



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 40/314 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T++ ++NG+CK         +   +QK G +P  V Y  L+   CKAG 
Sbjct: 415 MLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGH 474

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A     ++  SG   N++ +  ++   +R        +    M R   +FD   +  
Sbjct: 475 AKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNC 534

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY--------------------------- 153
           +I ++ + G + EA    + MV  G   DI +Y                           
Sbjct: 535 IIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKA 594

Query: 154 --------NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                   NTL+   CK G L+ A  L ++M  +    D YT+TIL+DG CK G I  A 
Sbjct: 595 CAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPAL 654

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHN 260
           + L+ M + G   +  AY C+++ L  +G++  A  +F+ +  K     D   Y+SM++ 
Sbjct: 655 ILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNG 714

Query: 261 LCKAKRLPSASKLL 274
             K  ++    +L+
Sbjct: 715 YLKGGQINEIERLM 728



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 143/329 (43%), Gaps = 25/329 (7%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73
           N +LN L     ++      +      F  ++ T NI++  LC  G+L  A  +L+++ +
Sbjct: 199 NNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKN 258

Query: 74  SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133
               PNA+TY TI+    +  + K  L IL  M++ G   D + Y  +I    K+ R   
Sbjct: 259 C-RLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSAR 317

Query: 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193
           A   +++M    +  D  SYNTLI+ +  EGK+  A  + ++M +Q  +    T+T LID
Sbjct: 318 AYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALID 377

Query: 194 GLCKAGNIKGARLHLEYMNKIG--------------------FDSNLEAYNCIVDRLGKD 233
           G C+ G    AR  L  M   G                     D ++  Y+ +++ + K 
Sbjct: 378 GYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKM 437

Query: 234 GKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 289
           G I     +   M+    + ++  Y+++V   CKA     A K  +   +SG+       
Sbjct: 438 GMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIH 497

Query: 290 KAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
            A++      G   EA++ +  +   KIS
Sbjct: 498 NALLCSFYREGMIAEAEQFKQYMSRMKIS 526



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 2/245 (0%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           ++ P +A++NI+++G  K       L ++R + K G  P+ VTY +LI GLC+ G +  A
Sbjct: 735 EVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIA 794

Query: 65  RWILKE--LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
              L++  L +SG  P    Y  ++    R        E+   MK  G         +++
Sbjct: 795 VKFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIV 854

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K G+++EA      ++  G+   I ++ TL++  CKE K++ A+ L   ME  G +
Sbjct: 855 RGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLK 914

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D  T+ +LI GLC    I  A    E M   G   N+  Y  +   +   G +     +
Sbjct: 915 VDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKL 974

Query: 243 FESME 247
            + +E
Sbjct: 975 LKDIE 979



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 127/285 (44%), Gaps = 30/285 (10%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+T C    NI+LN LC       A  M + + K+  +P  VTYN ++    K GR ++A
Sbjct: 229 DVTTC----NIVLNSLCTQGKLSKAESMLQKM-KNCRLPNAVTYNTILNWYVKKGRCKSA 283

Query: 65  RWILKELGDSGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
             IL ++  +G   +  TY  ++ K C   R  +  L +L  M+    T D   Y T+I 
Sbjct: 284 LRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYL-LLKRMREVNLTPDECSYNTLIH 342

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME------ 177
            F   G++  A     QM+   ++  + +Y  LI+ YC+ G+ + A  +L EM+      
Sbjct: 343 GFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRP 402

Query: 178 ------KQGFEC--------DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
                 KQ  +C        D  T++ LI+G+CK G I   +  L  M K G   N   Y
Sbjct: 403 REVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLY 462

Query: 224 NCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHN--LCKAKR 266
             +V    K G    A+  F  +  +     +S++HN  LC   R
Sbjct: 463 TTLVFYFCKAGHAKEALKYFVDI-YRSGLVANSVIHNALLCSFYR 506



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 142/294 (48%), Gaps = 27/294 (9%)

Query: 45  LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEIL 103
           L + ++L+    K G++  A   +  + + G   +  +   I+      N+   + L + 
Sbjct: 160 LFSVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLK 219

Query: 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
            ++ RK +  D      V+ +    G+L +A   +++M    +  + V+YNT++N Y K+
Sbjct: 220 ESLDRK-FPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLP-NAVTYNTILNWYVKK 277

Query: 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223
           G+ ++A  +LD+MEK G E D YT+ I+ID LCK      A L L+ M ++    +  +Y
Sbjct: 278 GRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSY 337

Query: 224 NCIVDRLGKDGKIDHAINVFESM---EVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLK 279
           N ++     +GKI+ AI +F  M    +K S  TY++++   C+  R   A ++L     
Sbjct: 338 NTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQI 397

Query: 280 SGVR---ILKSAQ-----------------KAVVDGLRHSGCRREAKKIQSKIR 313
           +GVR   + K+ Q                  A+++G+   G   E K+I S+++
Sbjct: 398 TGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQ 451



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 117/254 (46%), Gaps = 7/254 (2%)

Query: 1   MIC--GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58
           +IC  G    C A +N M+NG  K    +   R+ R + ++   P   +YNIL+ G  K 
Sbjct: 695 IICKEGLYADCIA-YNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKK 753

Query: 59  GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM--KRKGYTFDGF 116
           G+L    ++ +++   G  P+ +TY  ++         ++ ++ L  M  +  G      
Sbjct: 754 GQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHT 813

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            Y  +I A  ++G +  A +  E M   GV    V+ ++++   CK GK+E A ++   +
Sbjct: 814 HYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSI 873

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHL-EYMNKIGFDSNLEAYNCIVDRLGKDGK 235
            + G      T T L+ GLCK   I  A  HL + M   G   ++  YN ++  L     
Sbjct: 874 MRAGMVPTIATFTTLMHGLCKEFKIDDA-FHLKQLMESCGLKVDVVTYNVLITGLCNKKC 932

Query: 236 IDHAINVFESMEVK 249
           I  A++++E M+ K
Sbjct: 933 ICDALDLYEEMKSK 946



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 1/183 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P    +  ++N  C+    D A  +   ++  G VP  V  + +++GLCK G++  A 
Sbjct: 808 LQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAI 867

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +  +G  P   T+TT+M    +  K      +   M+  G   D   Y  +I   
Sbjct: 868 IVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGL 927

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
                + +A D  E+M + G+  +I +Y TL       G ++    LL ++E +G     
Sbjct: 928 CNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGI-VPS 986

Query: 186 YTH 188
           Y H
Sbjct: 987 YKH 989



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 40/165 (24%)

Query: 149 DIVSYNTLINLYCKEGKL-----------------------------------EAAYLLL 173
           ++ S + L+N Y KEGK+                                   E  +L L
Sbjct: 159 NLFSVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFL 218

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
            E   + F  D  T  I+++ LC  G +  A   L+ M       N   YN I++   K 
Sbjct: 219 KESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRL-PNAVTYNTILNWYVKK 277

Query: 234 GKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           G+   A+ + + ME      D +TY+ M+  LCK KR   A  LL
Sbjct: 278 GRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLL 322


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 136/266 (51%), Gaps = 4/266 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+ +  CK      A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 145 FNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMH 204

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 205 ASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L  A+ L+DEM  +G + DK T+T LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLI 324

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLK 384

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLL 274
            D+ TY+ +++ +CK   +   SKLL
Sbjct: 385 PDTGTYTMIINEVCKKGDVGKGSKLL 410



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 124/256 (48%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   ++   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXAN 232

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L +A D +++M   G++ D ++Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 293 CKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   +  M  +G   +   Y  I++ + K G +     + + 
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKE 412

Query: 246 MEVKDSFTYSSMVHNL 261
           M+  D    S + +N+
Sbjct: 413 MQ-XDGHAPSVVTYNV 427



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 203 MHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++      P+ ITY T++    +        +++  M  KG   D   Y T
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTT 322

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  ++ EM   G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVG 382

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+ +CK G++ KG++L L+ M   G   ++  YN +++
Sbjct: 383 LKPDTGTYTMIINEVCKKGDVGKGSKL-LKEMQXDGHAPSVVTYNVLMN 430



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 99/194 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +     +P+L+TYN LI GLCK G 
Sbjct: 238 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 297

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  A  ++ E+   G  P+ ITYTT++  C +        E    M ++    D   Y  
Sbjct: 298 LNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTA 357

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   M +M++ G++ D  +Y  +IN  CK+G +     LL EM+  G
Sbjct: 358 LISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDG 417

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 418 HAPSVVTYNVLMNG 431



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +    + G+   L  +NIL    CK G +R A+ +   +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWG 172

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G ++ SAM   G   D + Y  +I    K  ++  A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXAN 232

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++  A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 293 CKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-D 351

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K++   L  G++
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMMREMLSVGLK 384


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 140/273 (51%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K      +   M  KG   +G  + T+I    K GR+ 
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK+T+T LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+ +D    + E + V   
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +V+  CK   +   SKLL    + G
Sbjct: 385 PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDG 417



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D   R+   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGAN 232

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +    D   Y T+I   
Sbjct: 233 GLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A D +++M   G++ D  +Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 293 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   L  M  +G   +   Y  IV+   K G +     + + 
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKE 412

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 413 MQ-RDGHAPSVVTYNV 427



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 2/229 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++      P+ ITY T++    +    K   +++  M  KG   D F Y T
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 322

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++++  CK G++ KG++L L+ M + G   ++  YN +++
Sbjct: 383 LKPDTGTYTMIVNEFCKKGDVWKGSKL-LKEMQRDGHAPSVVTYNVLMN 430



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 101/194 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +     +P+L+TYN LI GLCK G 
Sbjct: 238 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 297

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+  TYTT++  C +        E    M ++    D   Y  
Sbjct: 298 LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTA 357

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  ++N +CK+G +     LL EM++ G
Sbjct: 358 LISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDG 417

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 418 HAPSVVTYNVLMNG 431



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 130/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + SAM   G   D + Y  +I    K  ++  A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGAN 232

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
              ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 233 GLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 293 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-D 351

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K+L   L  G++
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 157/380 (41%), Gaps = 75/380 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+  M++G       + A +MFR +   G +P++V++N  +  LCK GR
Sbjct: 177 MVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGR 236

Query: 61  LRTARWILKELGDSGHAPNAITYTTIM-----KCCFRNRKYKL----------------- 98
            + A  I   +   GH PN +TY  ++     + CF +                      
Sbjct: 237 SKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTI 296

Query: 99  -------------GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
                         + ILS M+ +G + D F Y T+I+A  ++GRL +A D   QM+  G
Sbjct: 297 LIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTG 356

Query: 146 VQLDIVSY------------------------------------NTLINLYCKEGKLEAA 169
           VQ + V Y                                    N++++  CKEG++  A
Sbjct: 357 VQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDA 416

Query: 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229
           + + D ++  G   D      LIDG C  G +  A   L+ M   G   +   YN +V+ 
Sbjct: 417 HHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNG 476

Query: 230 LGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285
             K G+ID  +N+F  M  K     + TY+ ++  L +A R  +A K+L   +  G  + 
Sbjct: 477 YFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVS 536

Query: 286 KSAQKAVVDGLRHSGCRREA 305
                 ++ GL  + C  EA
Sbjct: 537 LPTYNIILKGLCRNNCTDEA 556



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 142/304 (46%), Gaps = 7/304 (2%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G  +P   T+N +++G  K      A  ++  + + GFVP++VT+N +I  LCKA  +  
Sbjct: 110 GVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDN 169

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  +L+++ D+G  PN +TYT+++       +++   ++   M  +G   D   + + + 
Sbjct: 170 AELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMD 229

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           +  K GR KEA +    M   G + +IV+Y  L++ Y  EG         + M+  G   
Sbjct: 230 SLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVA 289

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           +    TILID   K G +  A L L  M   G   ++  Y+ ++  L + G++  A++ F
Sbjct: 290 NCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKF 349

Query: 244 ESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299
             M       ++  Y S++   C    L  A +L+   + +G+        A  + + HS
Sbjct: 350 NQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGI---PRPNIAFFNSIVHS 406

Query: 300 GCRR 303
            C+ 
Sbjct: 407 ICKE 410



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 140/307 (45%), Gaps = 6/307 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTAR 65
           P   ++ I+L  LC +  +  AL + R + K   V  P++VTYN +I G  K G++  A 
Sbjct: 77  PDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKAC 136

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  P+ +T+ +I+    + R       +L  M   G   +   Y ++I  +
Sbjct: 137 NLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGY 196

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
             +GR +EAT    +M   G+  DIVS+N+ ++  CK G+ + A  +   M  +G   + 
Sbjct: 197 STLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNI 256

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T+ IL+ G    G           M   G  +N   +  ++D   K G +D A+ +   
Sbjct: 257 VTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSE 316

Query: 246 ME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           M+      D FTYS+++  LC+  RL  A       + +GV+       +++ G    G 
Sbjct: 317 MQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGD 376

Query: 302 RREAKKI 308
             +AK++
Sbjct: 377 LVKAKEL 383



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 137/316 (43%), Gaps = 40/316 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P   T++ +++ LC+     +A+  F  +   G  P  V Y+ LI+G C  G L  A+
Sbjct: 322 LSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAK 381

Query: 66  WILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
            ++ E+ ++G   PN   + +I+    +  +      I   +K  G   D   + T+I  
Sbjct: 382 ELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDG 441

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           +  +G + +A   ++ M++ G+  D  +YNTL+N Y K G+++    L  EM  +  +  
Sbjct: 442 YCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPT 501

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+ I++DGL +AG    A+  L  M   G   +L  YN I+  L ++   D AI +F+
Sbjct: 502 TVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQ 561

Query: 245 SM--------------------------EVKDSF-------------TYSSMVHNLCKAK 265
            +                          E KD F             TY  M+ NL K  
Sbjct: 562 KLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEG 621

Query: 266 RLPSASKLLLSCLKSG 281
            +  A  +  S  KSG
Sbjct: 622 SVEEADNMFSSMEKSG 637



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 117/266 (43%), Gaps = 7/266 (2%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKYKLGLE 101
           P + TY +++ G C+A R          L  +G   +     T++KC C   R       
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV-TDGV-QLDIVSYNTLINL 159
           +L  M   G   D F Y  V+       R ++A D +  M   +GV   D+V+YNT+I+ 
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219
           + KEGK+  A  L  EM +QGF  D  TH  +I+ LCKA  +  A L L  M   G   N
Sbjct: 126 FFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185

Query: 220 LEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLL 275
              Y  ++      G+ + A  +F  M     + D  +++S + +LCK  R   A+++  
Sbjct: 186 KVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFY 245

Query: 276 SCLKSGVRILKSAQKAVVDGLRHSGC 301
           S    G R        ++ G    GC
Sbjct: 246 SMAAKGHRPNIVTYGILLHGYATEGC 271



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 15/220 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI   + P T T+N ++NG  K+   D+ L +FR +      P  VTYNI++ GL +AGR
Sbjct: 458 MISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGR 517

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A+ +L E+   G   +  TY  I+K   RN      + +   +      F+     T
Sbjct: 518 TVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNT 577

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I +   + R +EA D    +   G+  +  +Y  +I    KEG +E A  +   MEK G
Sbjct: 578 MINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSG 637

Query: 181 -FECDKYTH----TILIDG-LCKAGNIKGARLHLEYMNKI 214
              C +  +    T+L  G + KAGN         YM+K+
Sbjct: 638 CAPCSRLLNDTIRTLLEKGEIVKAGN---------YMSKV 668



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 98/237 (41%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +++G C       A  +   +   G  P+  TYN L+ G  K+GR+     + +E+ 
Sbjct: 435 FNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMS 494

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           D    P  +TY  I+   FR  +     ++L  M   G T     Y  ++    +     
Sbjct: 495 DKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTD 554

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
           EA    +++ T  V+ +I + NT+IN      + E A  L   +   G   +  T+ I+I
Sbjct: 555 EAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMI 614

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
             L K G+++ A      M K G        N  +  L + G+I  A N    ++ K
Sbjct: 615 RNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEIVKAGNYMSKVDGK 671



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 38/237 (16%)

Query: 77  APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136
            P   TY  +M  C R R+ +LGL     + R G   D     TV+       R  +A  
Sbjct: 5   PPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVK 64

Query: 137 YMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
            + + +T+ G   D  SY  ++   C + + + A  LL  M K+             +G+
Sbjct: 65  VLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKE-------------EGV 111

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDS 251
           C                      ++  YN ++    K+GKI  A N++  M     V D 
Sbjct: 112 CSP--------------------DVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDV 151

Query: 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            T++S+++ LCKA+ + +A  LL   + +GV   K    +++ G    G   EA K+
Sbjct: 152 VTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKM 208


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 144/301 (47%), Gaps = 10/301 (3%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+NIM+ G CK    D A+++   + K GF P+L T+NI +   C  G++     +L ++
Sbjct: 494 TYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQM 553

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+ +TY TI+    + +      E L+ + + G   +   Y  +I  + + G +
Sbjct: 554 KSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNI 613

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A   ++ M  +G+Q   V+YN+L+   C  G +E    +  +   +  E     +TI+
Sbjct: 614 SDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTII 673

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           I G CK G I  A ++ + M+  G   N   Y  ++    K G  + A  +F+ M     
Sbjct: 674 IQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGI 733

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS---AQKAVVDGLRHSGCRRE 304
           V DS +Y++++   C+   L    K++ S  +   ++LK    +  A VDG+    C++E
Sbjct: 734 VPDSVSYNTLISGFCEVDSL---DKMVESPAEMSSQVLKQDGCSYNAFVDGITTPWCQKE 790

Query: 305 A 305
           A
Sbjct: 791 A 791



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 119/262 (45%), Gaps = 4/262 (1%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D  LR+ R +      P        I+ LCK+G+   A  I  ++   G   N  T   +
Sbjct: 404 DLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNAL 463

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           +    +    K   ++L AM   G   D   Y  +I    K  ++ EA    + M+  G 
Sbjct: 464 IHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGF 523

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           + D+ ++N  ++ YC  GK+E    LLD+M+ +G + D  T+  +IDG CKA ++  A  
Sbjct: 524 KPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANE 583

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLC 262
           +L  + K G   N   YN ++   G++G I  AI + ++M+         TY+S+++ +C
Sbjct: 584 YLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMC 643

Query: 263 KAKRLPSASKLLLSCLKSGVRI 284
            A  +     +   C+   + +
Sbjct: 644 HAGLVEEVKAVFAQCIVKDIEL 665



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 141/301 (46%), Gaps = 17/301 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+  M+  LC+    D A  M   L++ G  P +VTYN+L+  LCK+GR+  A 
Sbjct: 207 VAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAF 266

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   + +    P+ +T+  ++    R +++     +L  M+  G T +   Y  +I   
Sbjct: 267 RLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWH 326

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G   EA    ++MV+ G++  +V+YN +    CKEG++E A  +LDEM   G     
Sbjct: 327 CRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGM---- 382

Query: 186 YTHTILIDGLCKAGNIKGA-------RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238
             H  L + +  A +++G        RL  E + +     N       +  L K GK + 
Sbjct: 383 MVHCSLFNSVV-AWHLRGTGRLDLVLRLIREMLARF-LKPNDALMTACIQELCKSGKHEE 440

Query: 239 AINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294
           A  ++  +  K    +  T ++++H LC+   +  A+K+L + + SGV + +     ++ 
Sbjct: 441 AAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQ 500

Query: 295 G 295
           G
Sbjct: 501 G 501



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 149/340 (43%), Gaps = 40/340 (11%)

Query: 1   MICGDLTPCTATFNIMLNGL-----------------------------------CKNRY 25
           M+ G + P   TF I+++GL                                   C+  +
Sbjct: 272 MVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGH 331

Query: 26  TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
              AL++F  +   G    +VTYN++ K LCK G +  A  IL E+  +G   +   + +
Sbjct: 332 CSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNS 391

Query: 86  IMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
           ++    R   +  L L ++  M  +    +       I    K G+ +EA +   Q++  
Sbjct: 392 VVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGK 451

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
           G+ +++ + N LI+  C+   ++ A  +L  M   G E D+ T+ I+I G CKA  +  A
Sbjct: 452 GLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEA 511

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHN 260
               + M K GF  +L  +N  +      GK++  +++ + M+ +    D  TY +++  
Sbjct: 512 IQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDG 571

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            CKAK +  A++ L   +K+G+R       A++ G   +G
Sbjct: 572 YCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNG 611



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 144/345 (41%), Gaps = 46/345 (13%)

Query: 9   CTATFNIMLNGLCKNRYTDNALR----MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           CTAT ++++   C N     +L      F  L   G  P + T +IL++ L   G+L  A
Sbjct: 136 CTATADLLVRA-CLNSPAPGSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVA 194

Query: 65  RWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           R +  E+ D    AP+  TYT ++K   R  +      +L+ ++R G       Y  ++ 
Sbjct: 195 RKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMD 254

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVS------------------------------- 152
           A  K GR++EA     +MV   V+  IV+                               
Sbjct: 255 ALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITP 314

Query: 153 ----YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208
               YN +I  +C++G    A  L DEM  +G +    T+ ++   LCK G ++ A   L
Sbjct: 315 NEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKIL 374

Query: 209 EYMNKIGFDSNLEAYNCIVD-RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
           + M   G   +   +N +V   L   G++D  + +   M  +    +    ++ +  LCK
Sbjct: 375 DEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCK 434

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           + +   A+++    L  G+ +  +   A++ GL      +EA K+
Sbjct: 435 SGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKV 479



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-----VKDSFTYSSMVHNLCKAKRLPS 269
           G   +++  + +V+ LG  G++D A  VF  M        D  TY++M+  LC+A  + +
Sbjct: 170 GASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDA 229

Query: 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317
           A  +L    +SG++        ++D L  SG   EA +++ ++   ++
Sbjct: 230 AFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRV 277


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 118/254 (46%), Gaps = 4/254 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +++ LCK   +  A      ++  G  P +VTYNILI G CK  +L  A  I
Sbjct: 43  PNALVFNGIMDALCKEGRSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEI 102

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   GH PN +TY T +    +  K    L +  AM  K    D +GY T+I    +
Sbjct: 103 LQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQ 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L EA   +++M   G       YN +++  CK  ++  A+ L   M   G   D  T
Sbjct: 163 AGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLT 222

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             +++ G C+   I  A L L+ M   G       YN ++D L + G++  A  + + M 
Sbjct: 223 FGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMI 282

Query: 248 VK----DSFTYSSM 257
            +    +S TY+ M
Sbjct: 283 SRGLSPNSRTYALM 296



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 4/281 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + + G +P +VT+ IL+ GLCKA RL  A  +++ + + G  PNA+ +  IM    +  +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                  +  M+  G +     Y  +I  F K  +L  A + +++M   G + + V+YNT
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            ++  CK GK++ A  L   M ++    D Y +T LIDGLC+AG +  A   L+ M   G
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
                  YN I+  L K  +I+ A  +F+ M     + D  T+  MV   C+  R+  A 
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDAL 240

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            LL     +G+   +     ++D L  +G   EA ++  ++
Sbjct: 241 LLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEM 281



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   TF +M+ G C+    D+AL + + ++  G  P  V YN LI  L +AGR
Sbjct: 211 MTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGR 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
           +  A  +L+E+   G +PN+ TY  + K
Sbjct: 271 VSEAYRLLQEMISRGLSPNSRTYALMRK 298


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 131/277 (47%), Gaps = 4/277 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MIC +L P   +   ++ G  K    D AL +F  + + G  P+ +  N ++ G C+AG 
Sbjct: 522 MICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGY 581

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
            + A  +L++  + G   N  +Y  I+    +    +  LE+L  M ++        Y T
Sbjct: 582 FKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYST 641

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+ F K    K A +   +MV  G+  +I +Y  L++++    K+  AY +  EM+++G
Sbjct: 642 LISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERG 701

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D+ ++T LI G C    +K A    E M++ G   N+  Y CI+D   K  +ID A 
Sbjct: 702 LCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLAT 761

Query: 241 NVFESME----VKDSFTYSSMVHNLCKAKRLPSASKL 273
            VF+ M     + D  TY+ ++    K      A KL
Sbjct: 762 WVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKL 798



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 123/249 (49%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P T   N +L+G C+  Y   AL +    Q+HGF     +YN +I  LCK G 
Sbjct: 557 MLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGY 616

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +L  +      P+ + Y+T++    +   +K  + + + M + G TF+   Y  
Sbjct: 617 PERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTI 676

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +++ F    ++ EA    ++M   G+ LD +SY TLI  +C   +++ A+ L +EM ++G
Sbjct: 677 LMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREG 736

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +  T+T +IDG CK+  I  A    + MN+     ++  Y  ++D   K G  D A 
Sbjct: 737 CSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAH 796

Query: 241 NVFESMEVK 249
            +++ M+ K
Sbjct: 797 KLYDVMKDK 805



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 8/272 (2%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             F+++++    N   +NAL +F   +  G  P++ T N L+K L +A R+   R + +E
Sbjct: 248 VVFDVLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRVFEE 307

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLE----ILSAMKRKGYTFDGFGYCTVIAAFV 126
           L D G +PN  TYT +M     +     G+     IL  + R G       Y T I    
Sbjct: 308 LKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLC 367

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K+G ++ A   +  +      L+  S+N +I  +CK G++  A  +L+EM+  G   D Y
Sbjct: 368 KVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVY 427

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           +++ILI+  C  G++      +E M       ++ +Y  ++  L K   + +A+++F S+
Sbjct: 428 SYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSI 487

Query: 247 EVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
                  DS  Y +++   C    + SA KLL
Sbjct: 488 GASSCKYDSTVYETLIDGFCMQGDMDSAIKLL 519



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 140/308 (45%), Gaps = 4/308 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           + +FN ++ G CK      AL++   ++  G +P++ +Y+ILI   C  G +     +++
Sbjct: 391 SHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLME 450

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  S   P+ ++YT+++    +    +  ++I  ++      +D   Y T+I  F   G
Sbjct: 451 EMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQG 510

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +  A   +E+M+ + +     S  +LI  Y K G  + A  + + M + G   D     
Sbjct: 511 DMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACN 570

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            ++DG C+AG  K A   LE   + GF+ N  +YN I+ +L K+G  + A+ +   M  +
Sbjct: 571 YILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKR 630

Query: 250 DSFT----YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           +       YS+++    K      A  L    +K G+    +    ++    HS    EA
Sbjct: 631 NVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEA 690

Query: 306 KKIQSKIR 313
             I  +++
Sbjct: 691 YGIFKEMK 698



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 125/295 (42%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++  +++GLCK     NA+ +F  +       +   Y  LI G C  G + +A 
Sbjct: 457 IKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAI 516

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+E+  +   P A +  ++++  ++   +   LE+ +AM R G   D      ++   
Sbjct: 517 KLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGS 576

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            + G  KEA   +E     G  L+  SYN +I   CKEG  E A  LL  M K+      
Sbjct: 577 CRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSV 636

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             ++ LI G  K  N K A      M K+G   N+  Y  ++       K+  A  +F+ 
Sbjct: 637 VNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKE 696

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M+ +    D  +Y++++   C  + +  A  L     + G          ++DG 
Sbjct: 697 MKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGF 751



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 103/267 (38%), Gaps = 58/267 (21%)

Query: 39  HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98
           HGF   +  + I++     AG +R   W L  L D     N   Y T          +  
Sbjct: 186 HGFSHSISCFRIIVHAFALAG-MRLEVWAL--LRDIVGFCNEAKYDTF-------ELFSA 235

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
            L+    ++R G  FD      +I+ F     L+ A D        G++ DI + N L+ 
Sbjct: 236 FLDSPQHVERSGVVFD-----VLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLK 290

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL--------------------------- 191
              +  ++E    + +E++ +G   + YT+TI+                           
Sbjct: 291 CLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRS 350

Query: 192 ------------IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                       I GLCK GN++ A + +  ++      N  ++N ++    K G++  A
Sbjct: 351 GEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEA 410

Query: 240 INVFESME----VKDSFTYSSMVHNLC 262
           + V E M+    + D ++YS +++  C
Sbjct: 411 LQVLEEMKSSGILPDVYSYSILINAFC 437


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 5/280 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           P   T   +++GLCK  +T+ A R+F  L +   + P + TY  +I G CK  +L  A  
Sbjct: 331 PNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEM 390

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +L  + + G  PN  TYT ++    +   +    E++  M ++G+T + F Y  +I    
Sbjct: 391 LLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLC 450

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR  EA   + + +  G+  D V+Y  LI+ +C++   + A  +   M K G + D +
Sbjct: 451 KKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMH 510

Query: 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246
           T+ +LI   C+   ++ +    E    +G     E Y  ++    +DG I  AI  F  M
Sbjct: 511 TYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKM 570

Query: 247 E----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                  DS TY +++  LC   +L  A +L  + + +G+
Sbjct: 571 RDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGL 610



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA- 64
           L P    F+ ++NGLCK      A  M   + + G+ P + T+  LI GLCK G    A 
Sbjct: 294 LNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAF 353

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
           R  LK +    + PN  TYT ++    +  K      +L  MK +G   +   Y  +I  
Sbjct: 354 RLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDG 413

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             K G    A + M+ M  +G   +I +YN +I+  CK+G+   AY LL    K G   D
Sbjct: 414 HCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHAD 473

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           K T+TILI   C+  + K A      M K+G   ++  YN ++    +  K++ +  +FE
Sbjct: 474 KVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFE 533

Query: 245 S------MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
                  +  K+  TY+SM+   C+   + SA K        G +       A++ GL
Sbjct: 534 EAVGLGLLPTKE--TYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGL 589



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 38/315 (12%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P + ++ +M+ G C+     +  R  + + + G+  +  T  ++I    + G +  A 
Sbjct: 224 VVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAF 283

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W  K+    G  PN I +++++    +    K   E+L  M RKG+  + + +  +I   
Sbjct: 284 WYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGL 343

Query: 126 VKIGRLKEATDYMEQMV-TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
            K G  ++A     ++V +D  + ++ +Y  +IN YCKE KL  A +LL  M++QG   +
Sbjct: 344 CKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPN 403

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+T LIDG CKAGN   A   ++ M K GF  N+                        
Sbjct: 404 TNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNI------------------------ 439

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
                  FTY++++  LCK  R P A KLL   LKSG+     A K     L    CR+ 
Sbjct: 440 -------FTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLH----ADKVTYTILISEFCRQT 488

Query: 305 AKKIQSKI--RMAKI 317
             K    I  RM K+
Sbjct: 489 DNKQALAIFSRMFKV 503



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 140/285 (49%), Gaps = 5/285 (1%)

Query: 29  ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           A+ M   +Q HG V +    N +I      G +  A  +  E+ D    P++ +Y  ++ 
Sbjct: 177 AVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVV 236

Query: 89  CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 148
              R  +       L  M  +GY  D      +I+ F + G +  A  Y ++ V  G+  
Sbjct: 237 GYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNP 296

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA-RLH 207
           +++++++LIN  CK G ++ A+ +L+EM ++G++ + YTHT LIDGLCK G  + A RL 
Sbjct: 297 NLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLF 356

Query: 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVKDSFTYSSMVHNLCK 263
           L+ +    +  N+  Y C+++   K+ K++ A    I + E   V ++ TY+ ++   CK
Sbjct: 357 LKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCK 416

Query: 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           A     A +L+    K G         A++DGL   G   EA K+
Sbjct: 417 AGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKL 461



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 125/273 (45%), Gaps = 13/273 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+  +++G CK      A  +   + K GF P + TYN +I GLCK GR   A 
Sbjct: 400 LVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAY 459

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+    SG   + +TYT ++    R    K  L I S M + G   D   Y  +IA F
Sbjct: 460 KLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATF 519

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            +  +++E+    E+ V  G+     +Y ++I  YC++G + +A     +M   G + D 
Sbjct: 520 CRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDS 579

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG------KDGKIDHA 239
            T+  LI GLC    +  A    E M     D+ L    C V R+       K G    A
Sbjct: 580 ITYGALISGLCNESKLDEACQLYETM----IDNGLSP--CEVTRVTLAYEYCKQGDSATA 633

Query: 240 INVFESMEVKDSF-TYSSMVHNLCKAKRLPSAS 271
           + + E +E K    T ++++  LC  K++  A+
Sbjct: 634 MIILERLEKKLWIRTVNTLIRKLCSEKKVGVAA 666



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 32/209 (15%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
            T+ I+++  C+      AL +F  + K G  P++ TYN+LI   C+  ++  +  + +E
Sbjct: 475 VTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEE 534

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
               G  P   TYT+++    R+      ++    M+  G   D   Y  +I+      +
Sbjct: 535 AVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESK 594

Query: 131 LKEATDYMEQMVTDGV--------------------------------QLDIVSYNTLIN 158
           L EA    E M+ +G+                                +L I + NTLI 
Sbjct: 595 LDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEKKLWIRTVNTLIR 654

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             C E K+  A L   ++  +    D+ T
Sbjct: 655 KLCSEKKVGVAALFFHKLLDKDLNVDRIT 683



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 92/196 (46%), Gaps = 4/196 (2%)

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++ +F +IG+LKEA + + +M   G+ L     N +I++    G ++ A  + DEM  + 
Sbjct: 164 MVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRA 223

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  ++ +++ G C+ G I      L+ M + G+  +      ++    + G ++ A 
Sbjct: 224 VVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAF 283

Query: 241 NVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
             F+         +   +SS+++ LCK   +  A ++L   ++ G +       A++DGL
Sbjct: 284 WYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGL 343

Query: 297 RHSGCRREAKKIQSKI 312
              G   +A ++  K+
Sbjct: 344 CKKGWTEKAFRLFLKL 359


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 139/273 (50%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK+     A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXML 185

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L+ A+ L+DEM  +G + DK T+T LI
Sbjct: 246 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 305

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK-IDHAINVFESMEV--- 248
           +G CK G++  A  H + M +     +  AY  ++    ++G+ +D    + E + V   
Sbjct: 306 NGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLK 365

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    + G
Sbjct: 366 PDARTYTMIINEFCKXGDVWXGSKLLKEMQRDG 398



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 1/256 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    D    +   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 154 LRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDAN 213

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN +T+TT++    +N +  L +EI   M  +  + D   Y T+I   
Sbjct: 214 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 273

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G LK+A   +++M   G++ D ++Y TLIN  CKEG L++A+     M ++    D+
Sbjct: 274 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDE 333

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI G C+ G    A   L  M  +G   +   Y  I++   K G +     + + 
Sbjct: 334 VAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKE 393

Query: 246 MEVKDSFTYSSMVHNL 261
           M+ +D    S + +N+
Sbjct: 394 MQ-RDGHVPSVVTYNV 408



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 119/228 (52%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 184 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 243

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  I K++     +P+ ITY T++    +    K    ++  M  KG   D   Y T
Sbjct: 244 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 303

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  +L EM   G
Sbjct: 304 LINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVG 363

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
            + D  T+T++I+  CK G++      L+ M + G   ++  YN +++
Sbjct: 364 LKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMN 411



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 100/194 (51%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   TF  +++G CKN   D A+ +++ +      P+L+TYN LI GLCK G 
Sbjct: 219 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 278

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A  ++ E+   G  P+ ITYTT++  C +        E    M ++    D   Y  
Sbjct: 279 LKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTA 338

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I+   + GR  +A   + +M++ G++ D  +Y  +IN +CK G +     LL EM++ G
Sbjct: 339 LISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDG 398

Query: 181 FECDKYTHTILIDG 194
                 T+ +L++G
Sbjct: 399 HVPSVVTYNVLMNG 412



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           +L  L K +Y       +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 153

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G  + S M   G   D + Y  +I    K  ++ +A 
Sbjct: 154 LRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDAN 213

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  ++M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 214 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 273

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G++K A   ++ M+  G   +   Y  +++   K+G +D A       + E++ + D
Sbjct: 274 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRL-D 332

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++   C+  R   A K+L   L  G++
Sbjct: 333 EVAYTALISGXCQEGRSVDAEKMLREMLSVGLK 365


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 135/295 (45%), Gaps = 39/295 (13%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T +F+I+++GLC     D AL +FR + + G    ++ YN LI  L  + RL     +
Sbjct: 455 PDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLL 514

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI------------------------- 102
           LKE+  SG  P   T+ +I  C  R       L++                         
Sbjct: 515 LKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCK 574

Query: 103 ----------LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
                     L+ M R+G+  D   Y   I  FVKI  + +A +    +   G   D+V+
Sbjct: 575 RKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVA 634

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YNTLIN +CK  ++  A+ +LDEM  +G      T+ +LIDG CK G+I  A   L  M 
Sbjct: 635 YNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMV 694

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
               + N+  Y  ++D L   G+ D AI+++  M  K    +  ++ +++H LCK
Sbjct: 695 GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCK 749



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 129/277 (46%), Gaps = 3/277 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N +   LC+      AL M R ++ HG  P +  Y +L+K LCK  R   A   
Sbjct: 525 PTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNF 584

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G  P+ + Y+  +    + +     LEI   +  +GY  D   Y T+I  F K
Sbjct: 585 LAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCK 644

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           + R+ EA D +++MV  G+   +V+YN LI+ +CK G ++ A+  L  M  +  E +  T
Sbjct: 645 VKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVIT 704

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM- 246
           +T LIDGLC AG    A      M   G   N  ++  ++  L K G  D A+  F  M 
Sbjct: 705 YTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMG 764

Query: 247 --EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
             E  D+  Y +++ +    K    A ++L   +  G
Sbjct: 765 ERETPDTIVYVALITSFISNKNPTLAFEILKEMVAKG 801



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 145/378 (38%), Gaps = 90/378 (23%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           TF ++++G  +    D AL++F+ +QK GF P++  Y+ LI GLC    +  A  +L E+
Sbjct: 305 TFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEM 364

Query: 72  GDSGHAPNA---------------------------------ITYTTIMKCCFRNRKYKL 98
            + G  P+                                  + Y +++      +    
Sbjct: 365 KELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDK 424

Query: 99  GLEILSAMKRKGYTFDGF-----------------GYCTVIAAFVKIGRLKEATDYMEQM 141
              +L AM    YT D F                  +  VI      G+L  A      M
Sbjct: 425 AYYLLRAMTGDNYT-DNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDM 483

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
           V  G + +++ YN LI+      +LE  YLLL EM+  GF   ++TH  +   LC+  ++
Sbjct: 484 VRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDV 543

Query: 202 KGA-------RLH----------------------------LEYMNKIGFDSNLEAYNCI 226
            GA       R+H                            L  M + GF  ++ AY+  
Sbjct: 544 TGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAA 603

Query: 227 VDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           +D   K   +D A+ +F  +  +    D   Y+++++  CK KR+  A  +L   +  G+
Sbjct: 604 IDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGL 663

Query: 283 RILKSAQKAVVDGLRHSG 300
                    ++DG   +G
Sbjct: 664 VPSVVTYNLLIDGWCKNG 681



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 136/279 (48%), Gaps = 23/279 (8%)

Query: 42  VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101
           VP   ++N L++ + K+G +      LKE+ DSG  P+  T T++++    +RK+   L 
Sbjct: 196 VPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALS 255

Query: 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161
           + + +  +G+  DG     ++  F K G + +A + +E+M   G++L+  ++  LI+ + 
Sbjct: 256 VFNEIYGRGWV-DGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFV 314

Query: 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 221
           ++ +++ A  L  +M+K GF  D   +  LI GLC    I+ A   L  M ++G D +++
Sbjct: 315 RQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQ 374

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLS- 276
             + ++    ++  I   I   E +E  D+      Y+S+++ L   K +  A  LL + 
Sbjct: 375 ILSKLIAYCSEEVDIYRLIE--ERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAM 432

Query: 277 ---------------CLKSGVRILKSAQKAVVDGLRHSG 300
                           +K  VR   ++   V+DGL ++G
Sbjct: 433 TGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTG 471



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 35/213 (16%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P    ++  ++G  K +  D AL +FR +   G+ P++V YN LI G CK  R
Sbjct: 588 MVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKR 647

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  IL E+   G  P+ +TY  ++                             G+C 
Sbjct: 648 VSEAHDILDEMVAKGLVPSVVTYNLLID----------------------------GWC- 678

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
                 K G + +A   + +MV    + ++++Y TLI+  C  G+ + A  L +EM  +G
Sbjct: 679 ------KNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKG 732

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
              ++ +   LI GLCK G    A L+   M +
Sbjct: 733 CSPNRISFIALIHGLCKCGWPDAALLYFREMGE 765



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  +  P   T+  +++GLC     D+A+ ++  ++  G  P  +++  LI GLCK G 
Sbjct: 693 MVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGW 752

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
              A    +E+G+    P+ I Y  ++     N+   L  EIL  M  KG
Sbjct: 753 PDAALLYFREMGER-ETPDTIVYVALITSFISNKNPTLAFEILKEMVAKG 801


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 5/284 (1%)

Query: 4   GDLTPCTATFNIMLNGLCKN-RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
           G   P   ++N ++NGL +  R  D A  +F  +   G  P++VTYN +I  L KA  + 
Sbjct: 196 GGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMD 255

Query: 63  TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            A  +L  +  +G  PN IT+ +++     + K    + +   M R G   D F Y T++
Sbjct: 256 KAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLM 315

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
               K GR  EA    + MV  G + +  +Y TL++ Y  EG L   + LLD M + G +
Sbjct: 316 GYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQ 375

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D Y   ILI    K G +  A L    M + G + +   Y  ++D L   GK+D A+  
Sbjct: 376 PDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQ 435

Query: 243 FESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           F  +       D+  + +++H LC   +   A +L +  +  G+
Sbjct: 436 FGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGI 479



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 135/281 (48%), Gaps = 4/281 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P T T+ I+++ LC     D+A+  F  L   G  P+ V +  LI GLC   +   A 
Sbjct: 409 LNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAE 468

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+   G  PN I + T++    +         I   M R     D   Y T+I  +
Sbjct: 469 ELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGY 528

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G++ EA   +E MV DGV+ + V+YNT+IN YCK G++E A+ L  +M  +G     
Sbjct: 529 CLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGI 588

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T++ ++ GL +A     A+    +M K G   ++  YN I+  L ++   D A+ +F++
Sbjct: 589 VTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQN 648

Query: 246 MEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
           + + D    + T++ M+  L K  R   A  L  S L  G+
Sbjct: 649 LYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGL 689



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 153/335 (45%), Gaps = 41/335 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L+P   T+N +++ L K R  D A  +   + K+G +P  +T+N L+ G C +G+
Sbjct: 229 MLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGK 288

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  + K +   G  P+  TY T+M    +N +     +I  +M ++G+  +   Y T
Sbjct: 289 PNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGT 348

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +   G L +    ++ MV +G+Q D   +N LI  Y K GK++ A LL  +M +QG
Sbjct: 349 LLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQG 408

Query: 181 FECDKYTHTILIDGLCKAGNI------------------------------------KGA 204
              D  T+ I++D LC  G +                                    K  
Sbjct: 409 LNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAE 468

Query: 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHN 260
            L +E + + G   N   +N +++ L K+G +  A N+F+ M      +D  TY++++  
Sbjct: 469 ELAVEMIGR-GICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDG 527

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            C   ++  A+KLL   +  GV+  +     +++G
Sbjct: 528 YCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMING 562



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 14/308 (4%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQ-----KHGFVPELVTYNILIKGLCKAGR- 60
           TP   ++ I+L GLC    +  AL +   +      + G+ P++V+YN +I GL + GR 
Sbjct: 159 TPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQ 218

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L TA  +  ++ D G +P+ +TY +I+    + R       +L  M + G   +   + +
Sbjct: 219 LDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +   G+  +A    ++M  DGV+ D+ +YNTL+   CK G+   A  + D M K+G
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            + +  T+  L+ G    G++      L+ M + G   +   +N ++    K GK+D A+
Sbjct: 339 HKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAM 398

Query: 241 NVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +F  M  +    D+ TY  ++  LC   ++  A       +  G+    +    V   L
Sbjct: 399 LLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGL----TPDAVVFRNL 454

Query: 297 RHSGCRRE 304
            H  C R+
Sbjct: 455 IHGLCARD 462



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 153/347 (44%), Gaps = 40/347 (11%)

Query: 2   ICGD-LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +C D + P   T+N ++  LCKN  +  A ++F  + K G  P   TY  L+ G    G 
Sbjct: 299 MCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGS 358

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L     +L  +  +G  P+   +  ++    ++ K    + + S M+R+G   D   Y  
Sbjct: 359 LVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGI 418

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS---------------------------- 152
           V+ A   +G++ +A     +++++G+  D V                             
Sbjct: 419 VMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRG 478

Query: 153 -------YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
                  +NTL+N  CKEG +  A  + D M +   + D  T+  LIDG C  G +  A 
Sbjct: 479 ICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAA 538

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNL 261
             LE M   G   N   YN +++   K+G+I+ A ++F  M  K       TYS+++  L
Sbjct: 539 KLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGL 598

Query: 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
            +A+R  +A +L L  +KSG++        ++ GL  + C  +A +I
Sbjct: 599 FQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRI 645



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 140/290 (48%), Gaps = 13/290 (4%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T++++++   +  + D A      + + G+  E +T++ L+K LC   R   A 
Sbjct: 87  VPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAM 146

Query: 66  WI-LKELGDSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAM-----KRKGYTFDGFGY 118
            I L+ +   G  PN  +YT ++K  C  NR  +  L +L  M      R GY  D   Y
Sbjct: 147 DIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQ-ALHLLHTMMVADDTRGGYPPDVVSY 205

Query: 119 CTVIAAFVKIGR-LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
            TVI   ++ GR L  A    +QM+  G+  D+V+YN++I+   K   ++ A ++L  M 
Sbjct: 206 NTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMV 265

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           K G   ++ TH  L+ G C +G    A    + M + G + ++  YN ++  L K+G+  
Sbjct: 266 KNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSM 325

Query: 238 HAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
            A  +F+SM       +S TY +++H       L     LL   +++G++
Sbjct: 326 EARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQ 375



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  D+     T+N +++G C +   D A ++  G+   G  P  VTYN +I G CK GR
Sbjct: 509 MVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGR 568

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + +++   G  P  +TY+TI++  F+ R+     E+   M + G  FD   Y  
Sbjct: 569 IEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNI 628

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++    +     +A    + +      L+  ++N +I+   K G+ + A  L   +  +G
Sbjct: 629 ILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARG 688

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  T+ +++  L + G ++        + K G  +N    N +V +L + G++  A
Sbjct: 689 LVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKA 747



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 9/248 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N M+NG CKN   ++A  +FR +   G  P +VTY+ +++GL +A R
Sbjct: 544 MVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARR 603

Query: 61  LRTAR----WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116
              A+    W++K    SG   +  TY  I+    +N      L I   +    +  +  
Sbjct: 604 TAAAKELYLWMIK----SGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENR 659

Query: 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
            +  +I A +K GR  EA D    ++  G+  ++V+Y  ++    ++G LE    L   +
Sbjct: 660 TFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSL 719

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           EK G   +      L+  L + G ++ A ++L  +++  F         +V  L   GK 
Sbjct: 720 EKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAESLV-LLVSSGKY 778

Query: 237 DHAINVFE 244
           D  IN   
Sbjct: 779 DQHINAIP 786


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 5/232 (2%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG----RLRT 63
           P   T+NI++N LCK    ++A  +   +Q      ++VTYN LI GLC+ G    R+  
Sbjct: 72  PDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVER 131

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           A  + +E+ D GH P ++TYT ++    R +  +   ++L  M   G  FD   Y  +I 
Sbjct: 132 AFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLIN 191

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
            F K G + +A D   +M T G   D+V+YN++++ +CK GK+E A  L  EM+ +G   
Sbjct: 192 RFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFP 251

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
           +  T+T + D   KAG ++ A  +L  M K G    + +Y  ++  + K GK
Sbjct: 252 NGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAI-SYVALISTICKLGK 302



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 141/275 (51%), Gaps = 8/275 (2%)

Query: 47  TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106
           TY+ +++G C+ G  R A  +L+ + ++    NA  Y  I+    ++ K K  L++L +M
Sbjct: 6   TYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSM 65

Query: 107 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG-- 164
                  D + Y  +I A  K+GRL++A   +E M       DIV+YNTLI+  C++G  
Sbjct: 66  ATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNG 125

Query: 165 --KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
             ++E A+ L +EM  +G      T+T++ID L +    + A+  L+ M++ G   +L  
Sbjct: 126 RFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVT 185

Query: 223 YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN +++R  K G +D A+++F  M     + D  TY+S+V   CKA ++  A+KL     
Sbjct: 186 YNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMK 245

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
             G+        ++ D    +G  ++A     ++R
Sbjct: 246 ARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMR 280



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 7/278 (2%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +NI+L  LCK+     AL +   +      P++ TYNILI  LCK GRL  A+ +++ + 
Sbjct: 42  YNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQ 101

Query: 73  DSGHAPNAITYTTIMK--CCFRNRKYKL--GLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128
                 + +TY T++   C   N ++++     +   M  KG+T     Y  VI A +++
Sbjct: 102 ARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRV 161

Query: 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188
              ++A   ++ M  +G   D+V+YN LIN + K G ++ A  L  EM  +G   D  T+
Sbjct: 162 KMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTY 221

Query: 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME- 247
             ++DG CKAG ++ A      M   G   N   Y  I D   K G++  A      M  
Sbjct: 222 NSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRK 281

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
             + D+ +Y +++  +CK  +     +LL   L+ G +
Sbjct: 282 EGLVDAISYVALISTICKLGKGKLGFQLLREMLEKGFK 319



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 109/198 (55%), Gaps = 1/198 (0%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP + T+ ++++ L + +  + A ++   + ++G   +LVTYN+LI    KAG +  A  
Sbjct: 145 TPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMD 204

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126
           +  E+   G  P+ +TY +++    +  K +   ++ + MK +G   +G  Y ++  A +
Sbjct: 205 LFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACL 264

Query: 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 186
           K GR+++A  Y+ +M  +G+ +D +SY  LI+  CK GK +  + LL EM ++GF+ +  
Sbjct: 265 KAGRMQDAHAYLVEMRKEGL-VDAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLV 323

Query: 187 THTILIDGLCKAGNIKGA 204
           T  ++ + L K  N   A
Sbjct: 324 TFNVVFEALSKESNTDDA 341



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206
           Q +  +Y+T++  YC++G+   A  LL+ M+      +   + I++  LCK G  K A  
Sbjct: 1   QANAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALD 60

Query: 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLC 262
            L  M       ++  YN +++ L K G+++ A  + E M+ +D      TY++++H LC
Sbjct: 61  LLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLC 120

Query: 263 KAK----RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           +      R+  A +L    +  G          V+D L       +A+K+
Sbjct: 121 RKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKV 170


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 6/300 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   TFN ++NGLCK      A        K  F+P  +TYN +I G  K G 
Sbjct: 527 MVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGA 586

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           + +A  + +E+  S  +PN ITYT+++    ++ K  L L++   MKRKG   D   Y T
Sbjct: 587 IDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYAT 646

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IA F K+  ++ A  +  +++  G+  + + YN +I+ Y     +EAA  L  EM    
Sbjct: 647 LIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNK 706

Query: 181 FECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             CD   +T LIDGL K G +  A  L+ E + + G   ++  YN +++ L   G++++A
Sbjct: 707 IPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCR-GIVPDIFMYNVLINGLCNHGQLENA 765

Query: 240 INVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             + + M+          Y++++    K   L  A +L    L  G+    +    +V+G
Sbjct: 766 GKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 148/341 (43%), Gaps = 78/341 (22%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             T+NI+L  LC+    + A  ++  +   G  P LV+YN +I G CK G +  A  ++ 
Sbjct: 431 VVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMN 490

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            + +SG  PNAITYT +M+  F+    +    +   M   G     + + ++I    K+G
Sbjct: 491 GIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVG 550

Query: 130 RLKEATDYMEQMV--------------TDG---------------------VQLDIVSYN 154
           R+ EA D +   +               DG                     +  ++++Y 
Sbjct: 551 RVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYT 610

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA---------- 204
           +LIN +CK  K++ A  + D+M+++G E D   +  LI G CK  +++ A          
Sbjct: 611 SLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEV 670

Query: 205 --------------------------RLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKID 237
                                      LH E + NKI  D  L+ Y  ++D L K+GK+ 
Sbjct: 671 GLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCD--LKIYTSLIDGLLKEGKLS 728

Query: 238 HAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLL 274
            A++++  M     V D F Y+ +++ LC   +L +A K+L
Sbjct: 729 FALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKIL 769



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 127/272 (46%), Gaps = 5/272 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +TP  A F++++    K    + A  ++  ++  G  P +   N L+KG  K   L  A 
Sbjct: 358 VTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAY 417

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L    ++G A + +TY  ++       K      +   M  KG T     Y  +I   
Sbjct: 418 LLLDGAVENGIA-SVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGH 476

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G + +A + M  ++  G++ + ++Y  L+    K+G  E A+ + D+M   G     
Sbjct: 477 CKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTD 536

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT   +I+GLCK G +  AR  L    K  F      YNCI+D   K+G ID A +V+  
Sbjct: 537 YTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYRE 596

Query: 246 M---EVKDS-FTYSSMVHNLCKAKRLPSASKL 273
           M   E+  +  TY+S+++  CK+ ++  A K+
Sbjct: 597 MCRSEISPNVITYTSLINGFCKSNKMDLALKM 628



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 151/351 (43%), Gaps = 46/351 (13%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY--------------------- 48
            A+++I++  +C+    D A ++  G ++ G+VP   TY                     
Sbjct: 257 AASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKD 316

Query: 49  ---------NI-----LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 94
                    N+     LIKG C  G + +A  +  E+ + G  PN   ++ +++ C +  
Sbjct: 317 EMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIG 376

Query: 95  KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154
             +   E+ + MK  G     F    ++  F K   L+ A   ++  V +G+   +V+YN
Sbjct: 377 NVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIA-SVVTYN 435

Query: 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214
            ++   C+ GK+  A  L D+M  +G      ++  +I G CK G +  A    E MN I
Sbjct: 436 IVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAH---EVMNGI 492

Query: 215 ---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRL 267
              G   N   Y  +++   K G  +HA N+F+ M     V   +T++S+++ LCK  R+
Sbjct: 493 IESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRV 552

Query: 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318
             A   L + +K            ++DG    G    A+ +  ++  ++IS
Sbjct: 553 SEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEIS 603



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 136/315 (43%), Gaps = 3/315 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P     N++L  + +    ++A R+F  + +     +  T  +L++   K G+
Sbjct: 178 MLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGK 237

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A     +    G   +A +Y+ +++   R     L  +++   +  G+      Y  
Sbjct: 238 FVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAA 297

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VI A V++G   EA    ++MV   V +++    +LI  YC  G + +A  L DE+ + G
Sbjct: 298 VIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVG 357

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              +    ++LI+   K GN++ A      M  +G    +   N ++    K   +++A 
Sbjct: 358 VTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAY 417

Query: 241 NVFE-SME--VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
            + + ++E  +    TY+ ++  LC+  ++  A  L    +  G+     +   ++ G  
Sbjct: 418 LLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHC 477

Query: 298 HSGCRREAKKIQSKI 312
             GC  +A ++ + I
Sbjct: 478 KKGCMDDAHEVMNGI 492



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/310 (17%), Positives = 110/310 (35%), Gaps = 74/310 (23%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            FN +L    +      A+  FR + + G VP +   N+L+  + +   +  A  +  E+
Sbjct: 154 VFNYLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEM 213

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
            +     +  T   +M+ C +                                    G+ 
Sbjct: 214 AERRIYGDCYTLQVLMRACLKG-----------------------------------GKF 238

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH--- 188
            EA  Y  Q    G++LD  SY+ +I   C+   L+ A  L++  E+ G+   + T+   
Sbjct: 239 VEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAV 298

Query: 189 --------------------------------TILIDGLCKAGNIKGARLHLEYMNKIGF 216
                                           T LI G C  G++  A    + + ++G 
Sbjct: 299 IGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGV 358

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASK 272
             N+  ++ +++   K G ++ A  ++  M+        F  + ++    K   L +A  
Sbjct: 359 TPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYL 418

Query: 273 LLLSCLKSGV 282
           LL   +++G+
Sbjct: 419 LLDGAVENGI 428



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 120/298 (40%), Gaps = 25/298 (8%)

Query: 7   TPCTATFNIMLNGLCKNRYTD-NALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLR-T 63
            PC  +   +L+ L  ++    +ALR F+ ++ K GF        +L++ L         
Sbjct: 55  APCIPSQKQVLDTLLLHKADPRSALRFFKQVETKGGFAKTADVLCLLLQILASNPETHGD 114

Query: 64  ARWILKE--LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121
           A+ +L +   GDS  AP A     ++  C     +KL               D   +  +
Sbjct: 115 AKHLLNKYVFGDS--APAAKVLVELLVECAERYGFKLS--------------DSRVFNYL 158

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           + ++V+  ++ EA +    M+ DGV   +   N L+    +   +E A+ L DEM ++  
Sbjct: 159 LISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRI 218

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
             D YT  +L+    K G    A  +       G   +  +Y+ ++  + +   +D A  
Sbjct: 219 YGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASK 278

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
           + E  E    V    TY++++    +      A +L    + S V +  +   +++ G
Sbjct: 279 LVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKG 336


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 137/302 (45%), Gaps = 39/302 (12%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           +F I++ G C+    + +  +   L++ GF P +V Y  LI G CK G +  A+ +  E+
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEM 224

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTF------------- 113
           G  G   N  TYT ++   F+N   K G E+   M+  G     YT+             
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRT 284

Query: 114 -DGF----------------GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
            D F                 Y T+I    +  +  EA   M+QM +DG+  ++++YNTL
Sbjct: 285 KDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTL 344

Query: 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
           I+ +C  GKL  A  L  +++ +G      T+ IL+ G CK G+  GA   ++ M + G 
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGI 404

Query: 217 DSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASK 272
             +   Y  ++D   +   ++ AI +   ME      D  TYS ++H  C   ++  AS+
Sbjct: 405 KPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASR 464

Query: 273 LL 274
           L 
Sbjct: 465 LF 466



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 156/339 (46%), Gaps = 38/339 (11%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVP----------------------------- 43
           + +M+N   +++  D+++  F  +   GFVP                             
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK 156

Query: 44  -----ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98
                ++ ++ I+IKG C+AG +  +  +L EL + G +PN + YTT++  C +  + + 
Sbjct: 157 IKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEK 216

Query: 99  GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
             ++   M + G   + + Y  +I    K G  K+  +  E+M  DGV  ++ +YN ++N
Sbjct: 217 AKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
            +CK+G+ + A+ L DEM ++G  C+  T+  LI GLC+      A   ++ M   G + 
Sbjct: 277 QHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINP 336

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           NL  YN ++D     GK+  A+++   ++ +       TY+ +V   CK      A K++
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVV 396

Query: 275 LSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
               + G++  K     ++D         +A +++S + 
Sbjct: 397 KEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPME 435



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 110/221 (49%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +++G C       AL + R L+  G  P LVTYNIL+ G CK G    A 
Sbjct: 334 INPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAG 393

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++KE+ + G  P+ ITYT ++    R    +  +++ S M+  G T D   Y  +I  F
Sbjct: 394 KVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGF 453

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G++ EA+   + MV   ++ + V YNT++  YCKEG    A  L  EME++    + 
Sbjct: 454 CIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNV 513

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226
            ++  +I+ LCK    K A   +E M   G D +    N I
Sbjct: 514 ASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLI 554



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 133/279 (47%), Gaps = 4/279 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++N  CK+  T +A ++F  +++ G    +VTYN LI GLC+  +   A  +
Sbjct: 266 PNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKV 325

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           + ++   G  PN ITY T++       K    L +   +K +G +     Y  +++ F K
Sbjct: 326 MDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCK 385

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G    A   +++M   G++   ++Y  LI+ + +   +E A  L   ME+ G   D +T
Sbjct: 386 KGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHT 445

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +++LI G C  G +  A    + M     + N   YN +V    K+G    A+ +F  ME
Sbjct: 446 YSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREME 505

Query: 248 VKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            K+      +Y  M+  LCK ++   A  L+   + +G+
Sbjct: 506 EKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGI 544



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P    +N M+ G CK   +  ALR+FR +++    P + +Y  +I+ LCK  +
Sbjct: 469 MVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERK 528

Query: 61  LRTARWILKELGDSGHAPN 79
            + A  +++++ D+G  P+
Sbjct: 529 SKEAEGLVEKMIDTGIDPS 547


>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g17670-like [Glycine max]
          Length = 456

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   +TP TAT ++ +  LC     D+A+ + +        P+  T+N L+K LCK+  
Sbjct: 141 MLAAGITPDTATADVAVRSLCSAGRLDHAVELIKEFASKHCPPDTYTFNFLVKHLCKSST 200

Query: 61  LRTARWILKELGDSGHA-PNAITYTTIMK--CCFRNRKYKLGLEILSAMKRKGYTFDGFG 117
           + T    + E+ +     P+ +TYT ++   C  +N   +  + ++S +  +G+  D F 
Sbjct: 201 ITTVYAFIDEMREKFDVKPDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEGFKLDCFV 260

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
           Y T++  +  + R  EA +   +M  +GV+ D+V+YNTLI    K G++  A  LL  M 
Sbjct: 261 YNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMA 320

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           ++G+  D+ T+T L++GLC+ G+  GA   L  M   G   N   YN ++  L K   ++
Sbjct: 321 EKGYFPDEVTYTSLMNGLCRKGDALGALALLGEMEAKGCSPNACTYNTLLHGLCKARLVE 380

Query: 238 HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
            A+  ++ +       D+ +Y + V  LC+  R+  A ++ 
Sbjct: 381 KAVKFYQVIRAGGLKLDTASYGTFVRALCRDGRIAEAYEVF 421



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 89/162 (54%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           +N ++ G C       A+ ++  +++ G  P+LVTYN LI GL K+GR+  AR +L+ + 
Sbjct: 261 YNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMA 320

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
           + G+ P+ +TYT++M    R       L +L  M+ KG + +   Y T++    K   ++
Sbjct: 321 EKGYFPDEVTYTSLMNGLCRKGDALGALALLGEMEAKGCSPNACTYNTLLHGLCKARLVE 380

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174
           +A  + + +   G++LD  SY T +   C++G++  AY + D
Sbjct: 381 KAVKFYQVIRAGGLKLDTASYGTFVRALCRDGRIAEAYEVFD 422



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N ++ GL K+     A ++ R + + G+ P+ VTY  L+ GLC+ G    A  +
Sbjct: 291 PDLVTYNTLIFGLSKSGRVTEARKLLRVMAEKGYFPDEVTYTSLMNGLCRKGDALGALAL 350

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L E+   G +PNA TY T++    + R  +  ++    ++  G   D   Y T + A  +
Sbjct: 351 LGEMEAKGCSPNACTYNTLLHGLCKARLVEKAVKFYQVIRAGGLKLDTASYGTFVRALCR 410

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156
            GR+ EA +  +  V      D+ +Y+TL
Sbjct: 411 DGRIAEAYEVFDYAVESKSLTDVAAYSTL 439



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 41/265 (15%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTA 64
            +P  +TF+I+L+    N    + +     L    G  P+  T ++ ++ LC AGRL  A
Sbjct: 110 FSPDRSTFHILLSHASNNSNLLSPIHQXLNLMLAAGITPDTATADVAVRSLCSAGRLDHA 169

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             ++KE       P+  T+  ++K   ++                          T+   
Sbjct: 170 VELIKEFASKHCPPDTYTFNFLVKHLCKS-------------------------STITTV 204

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC--KEGKLEAAYLLLDEMEKQGFE 182
           +  I  ++E  D         V+ D+V+Y  LI+  C  K   L  A  L+  + ++GF+
Sbjct: 205 YAFIDEMREKFD---------VKPDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEGFK 255

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D + +  ++ G C       A      M + G + +L  YN ++  L K G++  A  +
Sbjct: 256 LDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKL 315

Query: 243 FESMEVK----DSFTYSSMVHNLCK 263
              M  K    D  TY+S+++ LC+
Sbjct: 316 LRVMAEKGYFPDEVTYTSLMNGLCR 340



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 11/210 (5%)

Query: 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160
           + L+ M   G T D       + +    GRL  A + +++  +     D  ++N L+   
Sbjct: 136 QXLNLMLAAGITPDTATADVAVRSLCSAGRLDHAVELIKEFASKHCPPDTYTFNFLVKHL 195

Query: 161 CKEGKLEAAYLLLDEM-EKQGFECDKYTHTILIDGLC--KAGNIKGARLHLEYMNKIGFD 217
           CK   +   Y  +DEM EK   + D  T+TILID +C  K  N++ A   +  +++ GF 
Sbjct: 196 CKSSTITTVYAFIDEMREKFDVKPDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEGFK 255

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKL 273
            +   YN I+       +   AI V+  M+ +    D  TY++++  L K+ R+  A KL
Sbjct: 256 LDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKL 315

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           L    + G    +    ++++GL    CR+
Sbjct: 316 LRVMAEKGYFPDEVTYTSLMNGL----CRK 341



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 42/80 (52%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   T+N +L+GLCK R  + A++ ++ ++  G   +  +Y   ++ LC+ GR+  A  
Sbjct: 360 SPNACTYNTLLHGLCKARLVEKAVKFYQVIRAGGLKLDTASYGTFVRALCRDGRIAEAYE 419

Query: 67  ILKELGDSGHAPNAITYTTI 86
           +     +S    +   Y+T+
Sbjct: 420 VFDYAVESKSLTDVAAYSTL 439


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 141/279 (50%), Gaps = 6/279 (2%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N++++ LCK R    A+  F  + +    P++VTYN L+ GLCK GR+  A 
Sbjct: 66  LVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQAC 121

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +   +  +G  P+ +TYTT++    +  +++    +L  M  +  +   + YC++I   
Sbjct: 122 SLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGL 181

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K  ++ +A    E+M   G + D V+YNTLI+  C + +L  A  LL  M + GF+ DK
Sbjct: 182 CKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDK 241

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
            T T LI+GLC    IK A +  + M K G   +L  +  +V +L    K+  A++V  +
Sbjct: 242 ITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRN 301

Query: 246 MEV--KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
                +    Y+ +   L + +    A++LL    + GV
Sbjct: 302 YPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGV 340



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 130/313 (41%), Gaps = 39/313 (12%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T+N +L GLCKN     A  +F  ++  G  P  VTY  LI   CK  +  TA  +
Sbjct: 99  PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGL 158

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +     +P   +Y +I+    +NRK     ++   MK  G   D   Y T+I     
Sbjct: 159 LQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCV 218

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             RL EA D +  MV +G Q D +++  LI   C   +++ A++L   M KQG   D  T
Sbjct: 219 KQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVT 278

Query: 188 HTILIDGLC----------------------------------KAGNIKGARLHLEYMNK 213
           HT+L+  LC                                  + G  + ARL L+ M +
Sbjct: 279 HTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARL-LQKMAR 337

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPS 269
            G   N+  Y      LG   +   A   F  M  +    D   Y+ +V   CKA RL  
Sbjct: 338 RGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDM 397

Query: 270 ASKLLLSCLKSGV 282
           A K++    +SG+
Sbjct: 398 AEKMVRYMDQSGL 410



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 8/270 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   ++  ++  LC+    D A      + +   VP++ TYN++I  LCKA R+  A
Sbjct: 30  DCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRA 89

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
                E  ++   P+ +TY T++    +N +      +  +M+  G T     Y T+I  
Sbjct: 90  ----IEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDV 145

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K+ + + A   ++ M +      + SY ++IN  CK  K++ AY L +EM+  G + D
Sbjct: 146 FCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPD 205

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           + T+  LI GLC    +  A+  L  M + GF  +   +  +++ L    +I  A  +F+
Sbjct: 206 RVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQ 265

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSA 270
            M       D  T++ +V  LC  ++L  A
Sbjct: 266 GMAKQGCAPDLVTHTVLVSKLCILRKLRPA 295



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 121/255 (47%), Gaps = 8/255 (3%)

Query: 46  VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105
           VT N L+  L +A R      + + +      PNA++Y  ++K   R  K       ++ 
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165
           M R+    D F Y  VI    K  R+  A ++ E M     + D+V+YNTL+   CK G+
Sbjct: 61  MAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETM----PEPDVVTYNTLLGGLCKNGR 116

Query: 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225
           +  A  L   ME  G      T+T LID  CK    + A   L+ M        + +Y  
Sbjct: 117 VAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCS 176

Query: 226 IVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
           I++ L K+ K+D A  +FE M++     D  TY++++H LC  +RL  A  LL   +++G
Sbjct: 177 IINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENG 236

Query: 282 VRILKSAQKAVVDGL 296
            +  K    A+++GL
Sbjct: 237 FQPDKITFTALIEGL 251



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 129/292 (44%), Gaps = 37/292 (12%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           +P   ++  ++NGLCKNR  D A ++F  ++  G  P+ VTYN LI GLC   RL  A+ 
Sbjct: 168 SPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKD 227

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA-- 124
           +L  + ++G  P+ IT+T +++      + K    +   M ++G   D   +  +++   
Sbjct: 228 LLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLC 287

Query: 125 ----------------------------FVKIGR---LKEATDYMEQMVTDGVQLDIVSY 153
                                       F ++GR      A   +++M   GV  ++V+Y
Sbjct: 288 ILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTY 347

Query: 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213
                      +   AY     M +QG E D   + +L+DG CKA  +  A   + YM++
Sbjct: 348 TAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQ 407

Query: 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNL 261
            G   N+  YN +V    + GK++    +  +M  +    D  T+S++V  L
Sbjct: 408 SGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGL 459



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 8/242 (3%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   TF  ++ GLC       A  +F+G+ K G  P+LVT+ +L+  LC   +
Sbjct: 232 MVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRK 291

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR A  +++       A   I YT I +   R R +     +L  M R+G   +   Y  
Sbjct: 292 LRPALSVVRNYPACPEA--VILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTY-- 347

Query: 121 VIAAFVKIGRLKE---ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
             A F  +G  KE   A     +M+  G++ D+V+YN L++ +CK  +L+ A  ++  M+
Sbjct: 348 -TAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMD 406

Query: 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237
           + G   +  T+  L+   C+ G ++     L  M   G   ++  ++ +V  L   G+ D
Sbjct: 407 QSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQAD 466

Query: 238 HA 239
            A
Sbjct: 467 AA 468



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 68/140 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+     GL   +    A R FR + + G  P++V YN+L+ G CKA RL  A 
Sbjct: 340 VPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAE 399

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +++ +  SG  PN +TY T++    R  K +   E+L  M  +G   D   + T++A  
Sbjct: 400 KMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGL 459

Query: 126 VKIGRLKEATDYMEQMVTDG 145
             +G+   A  ++   ++ G
Sbjct: 460 FMVGQADAAYSFLNLAMSQG 479


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 135/273 (49%), Gaps = 4/273 (1%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FNI+++  CK      A  +F  + K G  P +V+YN L+ G  + G L     +   + 
Sbjct: 139 FNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMH 198

Query: 73  DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132
            SG  P+  TY+ ++    +  K     E+   M  KG   +G  + T+I    K GR+ 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192
            A +  +QM++  +  D+++YNTLI   CK+G L  A+ L+DEM  +G + DK T+T LI
Sbjct: 259 LAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLI 318

Query: 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---- 248
           DG CK G++  A  H + M +     +  AY  ++  L ++G+   A  +   M      
Sbjct: 319 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLK 378

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281
            D+ TY+ +++  CK   +   SKLL    + G
Sbjct: 379 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDG 411



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 117/242 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   ++N ++NG  +    +   ++   +   G  P++ TY++LI GLCK  ++  A 
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+   G  PN +T+TT++    +N +  L +E+   M  +    D   Y T+I   
Sbjct: 227 ELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGL 286

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G L +A D M++M   G++ D ++Y TLI+  CKEG L+ A+     M ++    D 
Sbjct: 287 CKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 346

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
             +T LI GLC+ G    A   +  M   G   +   Y  I++   K G +     + + 
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKE 406

Query: 246 ME 247
           M+
Sbjct: 407 MQ 408



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ML  L K +Y +     +  + + G+   L  +NIL+   CK G +R A+ +   +   G
Sbjct: 107 MLEHLVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWG 166

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+ ++Y T+M    R      G ++ SAM   G   D + Y  +I    K  ++ +A 
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           +  E+M+  G+  + V++ TLI+ +CK G+++ A  +  +M  Q    D  T+  LI GL
Sbjct: 227 ELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGL 286

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-----VFESMEVKD 250
           CK G +  A   ++ M+  G   +   Y  ++D   K+G +D A       + E++ + D
Sbjct: 287 CKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-D 345

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283
              Y++++  LC+  R   A K++   L  G++
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMMREMLSFGLK 378



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 115/216 (53%), Gaps = 2/216 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   T+++++NGLCK    D+A  +F  +   G VP  VT+  LI G CK GR
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  + K++      P+ ITY T++    +        +++  M  KG   D   Y T
Sbjct: 257 VDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTT 316

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I    K G L  A ++ ++M+ + ++LD V+Y  LI+  C+EG+   A  ++ EM   G
Sbjct: 317 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFG 376

Query: 181 FECDKYTHTILIDGLCKAGNI-KGARLHLEYMNKIG 215
            + D  T+T++I+  CK G++ KG++L L+ M + G
Sbjct: 377 LKPDTGTYTMIINEFCKKGDVWKGSKL-LKEMQRDG 411



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
             +  +++GLC+   + +A +M R +   G  P+  TY ++I   CK G +     +LKE
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKE 406

Query: 71  LGDSGHAPNAIT 82
           +   GHAP+ +T
Sbjct: 407 MQRDGHAPSVVT 418


>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
 gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
          Length = 643

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 159/355 (44%), Gaps = 43/355 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAG 59
           M    + P   T+N +L+GL      D A+ +F  +     V P++V+YNILIKG C+AG
Sbjct: 198 MRLAGVEPSRLTYNCLLDGLVNAGLLDTAINVFDAMSTEDRVRPDVVSYNILIKGYCRAG 257

Query: 60  RLRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYK-------------LGLEI--- 102
           R +     L +L +    AP+ +TY T+M+  +    +              +G EI   
Sbjct: 258 RTQDGMSRLADLREQAELAPDKVTYLTLMQRHYSEGTFPQCIALFQEMEERGMGKEIPQH 317

Query: 103 -----LSAMKRKGYTFDGFG----------------YCTVIAAFVKIGRLKEATDYMEQM 141
                + A+ + G  F+                   Y  +I +  K+GR KEA    E+M
Sbjct: 318 AYVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYTALIDSMGKLGREKEAMALFERM 377

Query: 142 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201
              G++LD V+Y  ++N  C+ G +E A        ++G   +   +T LIDG  K G +
Sbjct: 378 KASGIELDAVTYGVIVNCLCRFGNMEEALSCFRSCVEKGVAVNAIFYTSLIDGFGKTGMV 437

Query: 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSM 257
             A+   E M   GF  +   YN ++D L K G+ D A   +E ME     +  +TY+ +
Sbjct: 438 DQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRTDIACAFYERMEDDGCDQTVYTYTIL 497

Query: 258 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
           +  L K  +   A K   S +  G+    +A + + +GL  SG    A +I  ++
Sbjct: 498 IDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRVLANGLCLSGKFSRAWRILDEL 552



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 132/305 (43%), Gaps = 4/305 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
            + +++  L K+     AL +F  + K G       Y  LI  + K GR + A  + + +
Sbjct: 318 AYVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYTALIDSMGKLGREKEAMALFERM 377

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             SG   +A+TY  I+ C  R    +  L    +   KG   +   Y ++I  F K G +
Sbjct: 378 KASGIELDAVTYGVIVNCLCRFGNMEEALSCFRSCVEKGVAVNAIFYTSLIDGFGKTGMV 437

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A +  E+M+  G   D   YN LI+   K G+ + A    + ME  G +   YT+TIL
Sbjct: 438 DQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRTDIACAFYERMEDDGCDQTVYTYTIL 497

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE---SMEV 248
           IDGL K    + A    + M   G      A+  + + L   GK   A  + +    M V
Sbjct: 498 IDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRVLANGLCLSGKFSRAWRILDELAPMGV 557

Query: 249 KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA-KK 307
                +  M++ LCK  R   A KL    ++ G  +    +  +++ LR +G    A K 
Sbjct: 558 IPETAHEDMINVLCKTGRFKQACKLADGIVQKGREVPGRVRTMMINALRKAGNTDLAFKL 617

Query: 308 IQSKI 312
           + SKI
Sbjct: 618 VHSKI 622



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 36/200 (18%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI     P +  +N++++ L K   TD A   +  ++  G    + TY ILI GL     
Sbjct: 447 MIAKGFVPDSYCYNVLIDALVKAGRTDIACAFYERMEDDGCDQTVYTYTILIDGL----- 501

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                                         F+  K +  L+   +M  KG T     +  
Sbjct: 502 ------------------------------FKEHKNEEALKFWDSMIDKGITPTAAAFRV 531

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +       G+   A   ++++   GV +   ++  +IN+ CK G+ + A  L D + ++G
Sbjct: 532 LANGLCLSGKFSRAWRILDELAPMGV-IPETAHEDMINVLCKTGRFKQACKLADGIVQKG 590

Query: 181 FECDKYTHTILIDGLCKAGN 200
            E      T++I+ L KAGN
Sbjct: 591 REVPGRVRTMMINALRKAGN 610



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 8/207 (3%)

Query: 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178
            ++I +    G  +E     + M   GV+   ++YN L++     G L+ A  + D M  
Sbjct: 176 ASLIRSLAAFGLSEELLWAWQAMRLAGVEPSRLTYNCLLDGLVNAGLLDTAINVFDAMST 235

Query: 179 QG-FECDKYTHTILIDGLCKAGNIKGARLHL-EYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
           +     D  ++ ILI G C+AG  +     L +   +     +   Y  ++ R   +G  
Sbjct: 236 EDRVRPDVVSYNILIKGYCRAGRTQDGMSRLADLREQAELAPDKVTYLTLMQRHYSEGTF 295

Query: 237 DHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290
              I +F+ ME +          Y  ++  L K  +   A  +    LK G     +   
Sbjct: 296 PQCIALFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYT 355

Query: 291 AVVDGLRHSGCRREAKKIQSKIRMAKI 317
           A++D +   G  +EA  +  +++ + I
Sbjct: 356 ALIDSMGKLGREKEAMALFERMKASGI 382


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 155/353 (43%), Gaps = 40/353 (11%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N +LN     +  +    +   +++ G V  LVTY ILI+    + R+  A 
Sbjct: 213 VVPTVFTYNTLLNACVVRKDREGVDEILGLMEREGVVASLVTYTILIEWYASSERIGEAE 272

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + +E+ +     +   YT+++    R    +    +   M  +G   +   +  +I+  
Sbjct: 273 KVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGV 332

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+++ A   +E+M   GV L++V +NT+++ YCK G ++ A+ L D ME++GFE D 
Sbjct: 333 CKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADV 392

Query: 186 YTHTILIDGLCK-----------------------------------AGNIKGARLHLEY 210
           +T+ IL  GLCK                                    GN+      L  
Sbjct: 393 FTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRN 452

Query: 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHA----INVFESMEVKDSFTYSSMVHNLCKAKR 266
           + K G   N+  YN ++D   K+ K+  A      + E   + D FTY+S++H  C   +
Sbjct: 453 IEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDK 512

Query: 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK-IRMAKIS 318
           +  A KL    L  G+R       A++ GL   G   EA K+  + +RM  I 
Sbjct: 513 VDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMMRMGLIP 565



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 126/268 (47%), Gaps = 4/268 (1%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MIC  + P T TF  +++G+CK    + A  +   +Q  G    +V +N ++ G CK G 
Sbjct: 313 MICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGM 372

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A  +   +   G   +  TY  +     +  +Y+    +L+ M  KG   +     T
Sbjct: 373 MDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCAT 432

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
            I  + + G L E   ++  +   GV  +IV+YNTLI+ Y K  K++ A+ L  EM ++G
Sbjct: 433 FIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKG 492

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D +T+T LI G C    +  A      M   G   N++ Y  I+  L K+G+ D A+
Sbjct: 493 LLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEAL 552

Query: 241 NVFESME----VKDSFTYSSMVHNLCKA 264
            +++ M     + D   + ++V +L K 
Sbjct: 553 KLYDEMMRMGLIPDDRVFEALVGSLHKP 580



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 121/294 (41%), Gaps = 77/294 (26%)

Query: 30  LRMFRGLQKHGFVPELV-TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88
           +R FR + + G V   V +  I++  LC+ G +  A+ ++ E+   G  P   TY T++ 
Sbjct: 166 VRFFRRMVESGRVDIGVQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLN 225

Query: 89  CCFRNRKYKLGL-EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147
            C   RK + G+ EIL  M+R+G          V+A+                       
Sbjct: 226 ACVV-RKDREGVDEILGLMEREG----------VVAS----------------------- 251

Query: 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK----- 202
             +V+Y  LI  Y    ++  A  + +EM ++  E D Y +T +I   C+AGN++     
Sbjct: 252 --LVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASAL 309

Query: 203 ------------------------------GARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232
                                          A + LE M   G D N+  +N ++D   K
Sbjct: 310 FDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCK 369

Query: 233 DGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282
            G +D A  + + ME K    D FTY+ +   LCK  R   A ++L   ++ GV
Sbjct: 370 RGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGV 423


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 150/307 (48%), Gaps = 4/307 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   ++ I +  L + +  D A R+   ++  G  P+++T+ +LI+ LC AGR+  A+
Sbjct: 261 VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAK 320

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  ++  S   P+ +TY T++     N   +  +EI +AMK  GY  +   Y  VI A 
Sbjct: 321 DVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDAL 380

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            ++GR+ EA +  ++M   G+  +  SYN+LI+ + K  +   A  L   M+  G + + 
Sbjct: 381 CQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNG 440

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YTH + I+   K+G    A    E M   G   ++ A N ++  L K G++  A  VF  
Sbjct: 441 YTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHE 500

Query: 246 MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++      D+ TY+ M+    KA +   A K+    +++       A  +++D L  +G 
Sbjct: 501 LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGR 560

Query: 302 RREAKKI 308
             EA +I
Sbjct: 561 GDEAWRI 567



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 153/315 (48%), Gaps = 12/315 (3%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T  + +N   K+  +  A++ +  ++  G VP++V  N ++ GL K+GRL  A+ +
Sbjct: 438 PNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRV 497

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             EL   G +P+ ITYT ++KCC +  K+   ++I   M       D     ++I    K
Sbjct: 498 FHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYK 557

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            GR  EA     Q+    ++    +YNTL+    +EGK++    LL+EM    +  +  T
Sbjct: 558 AGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLIT 617

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  ++D LCK G +  A   L  M   G   +L +YN ++  L K+ + + A ++F  M+
Sbjct: 618 YNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMK 677

Query: 248 ---VKDSFTYSSMVHNLCKAKRLPSASKLLLS-CLKSGVRILKSAQKAVVDG-LRHSGCR 302
              + D  T  +++ +  K   +  A  ++    L+ G +  +S+  ++++G L+ +G  
Sbjct: 678 KVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAG-- 735

Query: 303 REAKKIQSKIRMAKI 317
                I+  I  A+I
Sbjct: 736 -----IEKSIEFAEI 745



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 144/311 (46%), Gaps = 4/311 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+N ++  L K+ +   AL ++R +   G VP + TY++L+    K   + T  W+L+E+
Sbjct: 197 TYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 256

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  PN  +YT  ++   + +++     IL+ M+ +G   D   +  +I      GR+
Sbjct: 257 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 316

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D   +M     + D V+Y TL++ +   G  ++   + + M+  G+  +   +T +
Sbjct: 317 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 376

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--- 248
           ID LC+ G +  A    + M + G      +YN ++    K  +   A+ +F+ M++   
Sbjct: 377 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 436

Query: 249 -KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
             + +T+   ++   K+     A +        G+     A  AV+ GL  SG    AK+
Sbjct: 437 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 496

Query: 308 IQSKIRMAKIS 318
           +  +++   +S
Sbjct: 497 VFHELKAMGVS 507



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 151/382 (39%), Gaps = 74/382 (19%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           MI  +  P     N +++ L K    D A R+F  L++    P   TYN L+ GL + G+
Sbjct: 536 MIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGK 595

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-- 118
           ++    +L+E+  S + PN ITY TI+ C  +N      L++L +M  KG   D   Y  
Sbjct: 596 VKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNT 655

Query: 119 --------------------------------CTVIAAFVKIGRLKEA------------ 134
                                           CT++ +FVKIG +KEA            
Sbjct: 656 VIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPG 715

Query: 135 ------------------------TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
                                    ++ E + + G+ LD      LI   CK+ K   A+
Sbjct: 716 SKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAH 775

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            L+ + +  G       +  LI GL     I  A      M ++G   +   YN ++D +
Sbjct: 776 ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 835

Query: 231 GKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286
           GK  +I+  + V E M  K       TY++++  L K++RL  A  L  + +  G     
Sbjct: 836 GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 895

Query: 287 SAQKAVVDGLRHSGCRREAKKI 308
                ++DGL  +G   +A+ +
Sbjct: 896 CTYGPLLDGLLKAGRIEDAENL 917



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 124/269 (46%), Gaps = 4/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
             TF  +  GL       +A      +++ G V    TYN L+  L K+G  R A  + +
Sbjct: 160 VGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYR 219

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
            +   G  P+  TY+ +M    + R  +  L +L  M+  G   + + Y   I    +  
Sbjct: 220 VMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAK 279

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R  EA   + +M  +G + D++++  LI + C  G++  A  +  +M+K   + D+ T+ 
Sbjct: 280 RFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYI 339

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME-- 247
            L+D     G+ +        M   G++ N+ AY  ++D L + G++  A+ +F+ M+  
Sbjct: 340 TLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 399

Query: 248 --VKDSFTYSSMVHNLCKAKRLPSASKLL 274
             V + ++Y+S++    KA R   A +L 
Sbjct: 400 GIVPEQYSYNSLISGFLKADRFGDALELF 428



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 149/340 (43%), Gaps = 41/340 (12%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M   +  P   T+N +L+ LCKN   ++AL M   +   G +P+L +YN +I GL K  R
Sbjct: 606 MYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEER 665

Query: 61  ----------------------------------LRTARWILKE-LGDSGHAPNAITYTT 85
                                             ++ A  I+K+     G   +  +  +
Sbjct: 666 YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHS 725

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +M+   +    +  +E    +   G T D F  C +I    K  +  EA + +++  + G
Sbjct: 726 LMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFG 785

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           V L    YN+LI     E  ++ A  L  EM++ G   D++T+ +L+D + K+  I+   
Sbjct: 786 VSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEML 845

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVHN 260
              E M++ G++S    YN I+  L K  +++ AI+++ ++ +   F     TY  ++  
Sbjct: 846 KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL-MSQGFSPTPCTYGPLLDG 904

Query: 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
           L KA R+  A  L    L+ G +   +    +++G R +G
Sbjct: 905 LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAG 944



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 39/331 (11%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D  P   T+  +L+    N  + + + ++  ++  G+   +V Y  +I  LC+ GR+  A
Sbjct: 330 DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 389

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +  E+   G  P   +Y +++    +  ++   LE+   M   G   +G+ +   I  
Sbjct: 390 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINY 449

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           + K G   +A    E M + G+  D+V+ N ++    K G+L  A  +  E++  G   D
Sbjct: 450 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 509

Query: 185 KYTHTI-----------------------------------LIDGLCKAGNIKGARLHLE 209
             T+T+                                   LID L KAG    A     
Sbjct: 510 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFY 569

Query: 210 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAK 265
            + ++  +     YN ++  LG++GK+   +++ E M       +  TY++++  LCK  
Sbjct: 570 QLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNG 629

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
            +  A  +L S    G     S+   V+ GL
Sbjct: 630 AVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 660



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 101/213 (47%)

Query: 16  MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           ++  LCK +    A  + +  +  G   +   YN LI GL     +  A  +  E+ + G
Sbjct: 761 LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 820

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135
             P+  TY  ++    ++ + +  L++   M RKGY      Y T+I+  VK  RL++A 
Sbjct: 821 CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 880

Query: 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195
           D    +++ G      +Y  L++   K G++E A  L +EM + G + +   + IL++G 
Sbjct: 881 DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 940

Query: 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228
             AGN +      + M   G + ++++Y  I+D
Sbjct: 941 RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID 973



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 92/184 (50%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T  +N ++ GL      D A  +F  +++ G  P+  TYN+L+  + K+ R+     + +
Sbjct: 790 TGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQE 849

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+   G+    +TY TI+    ++R+ +  +++   +  +G++     Y  ++   +K G
Sbjct: 850 EMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAG 909

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
           R+++A +   +M+  G + +   YN L+N +   G  E    L  +M  QG   D  ++T
Sbjct: 910 RIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYT 969

Query: 190 ILID 193
           I+ID
Sbjct: 970 IIID 973



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 88/196 (44%)

Query: 51  LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
           LIK LCK  +   A  ++K+    G +     Y +++          +   + + MK  G
Sbjct: 761 LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 820

Query: 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170
              D F Y  ++ A  K  R++E     E+M   G +   V+YNT+I+   K  +LE A 
Sbjct: 821 CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 880

Query: 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230
            L   +  QGF     T+  L+DGL KAG I+ A      M + G  +N   YN +++  
Sbjct: 881 DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 940

Query: 231 GKDGKIDHAINVFESM 246
              G  +   ++F+ M
Sbjct: 941 RIAGNTEKVCHLFQDM 956



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
            +P   T+  +L+GL K    ++A  +F  + ++G       YNIL+ G   AG      
Sbjct: 891 FSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVC 950

Query: 66  WILKELGDSGHAPNAITYTTIM 87
            + +++ D G  P+  +YT I+
Sbjct: 951 HLFQDMVDQGINPDIKSYTIII 972


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 159/359 (44%), Gaps = 47/359 (13%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+C   TP    FN +L+   K ++  + + +   L+  G  P+L T NILI   C  G+
Sbjct: 50  MLCMRHTPPIIQFNKILDSFAKMKHY-STVSLSHRLELKGIQPDLFTLNILINCFCHMGQ 108

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +     +L ++   G+ P+ +T  T++K      + K  L     +  +G+  +  GY T
Sbjct: 109 ITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGT 168

Query: 121 VIAAFVKIGR-----------------------------------LKEATDYMEQMVTDG 145
           +I    KIG                                    + EA     +M   G
Sbjct: 169 LINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKG 228

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
           +  D+V+YNTLI  +C  GKL+ A  LL+ M  +    D YT+TIL+D LCK G +K A+
Sbjct: 229 ISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAK 288

Query: 206 LHLEY-------MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTY 254
             + Y       M   G  +++  Y+ ++D L K+G +D AI +F  M+ +    + FT+
Sbjct: 289 RRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTF 348

Query: 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           + ++  L K  RL  A ++    L  G  +       +++G    G   EA  + SK+ 
Sbjct: 349 TILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKME 407



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 142/321 (44%), Gaps = 46/321 (14%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P T T N ++ GLC       AL     L   GF    V Y  LI G+CK G  R A  +
Sbjct: 126 PSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKL 185

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           LK++      P+ + Y+TI+    + +       + S M  KG + D   Y T+I  F  
Sbjct: 186 LKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCI 245

Query: 128 IGRLKEAT------------------------------------------DYMEQMVTDG 145
           +G+LKEA                                           D +++M   G
Sbjct: 246 VGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRG 305

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
              D+++Y++LI+  CK G L+ A  L ++M+ QG   + +T TIL+DGL K G +K A+
Sbjct: 306 QPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQ 365

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNL 261
              + +   G+  N+  YN +++   K G ++ A+ +   ME    + ++FT+ +++  L
Sbjct: 366 EVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIAL 425

Query: 262 CKAKRLPSASKLLLSCLKSGV 282
            K      A KLL   +  G+
Sbjct: 426 FKKDENDKAEKLLRQMIARGL 446


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 152/301 (50%), Gaps = 4/301 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T +IM+ GLC     ++ +++       G VP +V YN LI G CK G + +A  + K+L
Sbjct: 210 TTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKL 269

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P   T+ +++    +   ++    +L  MK +G + +   Y  +I A  K+G  
Sbjct: 270 KMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFD 329

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            +A D +++M  +  + D+V+YNTLIN +C  G++E A  LL++  ++G   +K T+T L
Sbjct: 330 IKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPL 389

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           + G CK G    A  +L  M+  G + ++ +Y  ++  L   G++D A+ + + M     
Sbjct: 390 VHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGI 449

Query: 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKK 307
           + D+  Y+ +++ L K  +L  A  +L   L   +         +VDG    G   EAKK
Sbjct: 450 LPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKK 509

Query: 308 I 308
           +
Sbjct: 510 L 510



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 143/318 (44%), Gaps = 14/318 (4%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
            P    +N +++G CK    ++A ++F+ L+  GF+P L T+  L+ G CK G       
Sbjct: 240 VPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDL 299

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI-----LSAMKRKGYTFDGFGYCTV 121
           +L E+ D G + N   Y  I+     + +YKLG +I     L  M       D   Y T+
Sbjct: 300 LLLEMKDRGLSVNVQMYNNII-----DARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTL 354

Query: 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           I  F   G ++EA   +EQ +  G+  + ++Y  L++ YCK+G+   A   L EM   G 
Sbjct: 355 INHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGL 414

Query: 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241
           E D  ++  LI GL  AG +  A    + M   G   +   YN +++ L K GK+  A  
Sbjct: 415 EVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKV 474

Query: 242 VFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297
           +   M       D+F Y+++V    +   L  A KL    ++ G+         ++ G  
Sbjct: 475 MLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFS 534

Query: 298 HSGCRREAKKIQSKIRMA 315
            SG    A     K+R A
Sbjct: 535 KSGMMDNAILCIDKMRRA 552



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 4/275 (1%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102
           P+LVTYN LI   C  G +  A  +L++    G APN +TYT ++    +  +Y    + 
Sbjct: 346 PDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDY 405

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
           L  M   G   D   Y  +I   V  G +  A    ++M+  G+  D   YN L+N   K
Sbjct: 406 LIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFK 465

Query: 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA 222
           +GKL  A ++L EM  Q    D + +  L+DG  + GN+  A+   + + + G D  +  
Sbjct: 466 KGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVG 525

Query: 223 YNCIVDRLGKDGKIDHAINVFESM----EVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278
           YN ++    K G +D+AI   + M     V D FT+S+++    K   + +  K+    +
Sbjct: 526 YNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMV 585

Query: 279 KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313
           K   +       ++++G    G  + A+K+ S +R
Sbjct: 586 KQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMR 620



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 122/269 (45%), Gaps = 4/269 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+  +++G CK      A      +   G   ++++Y  LI GL  AG + TA 
Sbjct: 379 LAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTAL 438

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            I   + + G  P+A  Y  +M   F+  K  +   +L+ M  +    D F Y T++  F
Sbjct: 439 TIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGF 498

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           ++ G L EA    + ++  G+   +V YN +I  + K G ++ A L +D+M +     D 
Sbjct: 499 IRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDI 558

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T + +IDG  K  N+         M K     N+  Y  +++   + G+   A  +F  
Sbjct: 559 FTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSM 618

Query: 246 ME---VKDS-FTYSSMVHNLCKAKRLPSA 270
           M    +K S  TYS ++ + CK  +L  A
Sbjct: 619 MRSHGLKPSVVTYSILIGSFCKEAKLGKA 647



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 91/206 (44%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P    +N+++NGL K      A  M   +      P+   Y  L+ G  + G L  A+
Sbjct: 449 ILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAK 508

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            + + + + G  P  + Y  ++K   ++      +  +  M+R  +  D F + T+I  +
Sbjct: 509 KLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGY 568

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK   +         MV    + ++V+Y +LIN YC++G+ + A  L   M   G +   
Sbjct: 569 VKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSV 628

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYM 211
            T++ILI   CK   +  A  + E M
Sbjct: 629 VTYSILIGSFCKEAKLGKAVSYFELM 654



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 122/280 (43%), Gaps = 18/280 (6%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+  ++ P    +  +++G  ++   D A ++F+ + + G  P +V YN++IKG  K+G 
Sbjct: 479 MLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGM 538

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   + ++  + H P+  T++TI+    +       L+I   M ++    +   Y +
Sbjct: 539 MDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTS 598

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  + + G  K A      M + G++  +V+Y+ LI  +CKE KL  A    + M    
Sbjct: 599 LINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINK 658

Query: 181 FECDKYTHTILIDGLCKAGNIKGAR----LH----------LEYMNKIGFDSNLEAYNCI 226
              +      L++G         +R    LH             M   G+     AYNCI
Sbjct: 659 CTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRMIGDGWTQKAAAYNCI 718

Query: 227 VDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLC 262
           +  L +   +  A+ +   M       D+ ++ +++H +C
Sbjct: 719 LICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGIC 758



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 9/213 (4%)

Query: 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYC 161
           L  MK K           V+ A+  +G + +A +    +V     L    + N+L+NL  
Sbjct: 121 LEEMKTKETIPTREALSDVLCAYADVGLVDKALEVYHGVVKLHNSLPSTYACNSLLNLLV 180

Query: 162 KEGKLEAAYLLLDEM--EKQGFE--CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217
           K  ++E A+ L DEM     G +   D YT +I++ GLC  G I+     +E     G  
Sbjct: 181 KHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGCV 240

Query: 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF----TYSSMVHNLCKAKRLPSASKL 273
            N+  YN ++D   K G+++ A  +F+ +++K       T+ S+V+  CK     +   L
Sbjct: 241 PNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLL 300

Query: 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306
           LL     G+ +       ++D     G   +AK
Sbjct: 301 LLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAK 333


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 138/281 (49%), Gaps = 4/281 (1%)

Query: 20  LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79
           L ++    +ALR+F  ++  G  P+      L+  L +A    TAR +  E+  +G A +
Sbjct: 124 LAQSARPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAVS 183

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
              Y  ++  C +         +++ M   G   D F Y TVIA + K G   EA    +
Sbjct: 184 THVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRD 243

Query: 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199
           +M  +G++ D V++N+LI+  CK G+++ A  L  EM       D  T+T LIDG C+AG
Sbjct: 244 RMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAG 303

Query: 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYS 255
           NI+ A      M   G    +  YN I+ +L +DGK+     +   M+ +    D  T +
Sbjct: 304 NIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCN 363

Query: 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           ++++  CK   + SA K+    ++SG+++ +   KA++ G 
Sbjct: 364 TLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGF 404



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 128/269 (47%), Gaps = 4/269 (1%)

Query: 10  TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69
           T T+N +++GLCK      A ++F  +      P+ VTY  LI G C+AG +  A  +  
Sbjct: 254 TVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRG 313

Query: 70  ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129
           E+  +G  P   TY  I++    + K K   ++L+ M  +    D     T+I A+ K G
Sbjct: 314 EMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRG 373

Query: 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189
            +  A    ++M+  G+QL+  +Y  LI+ +CK  +L+ A     +M   GF  +    +
Sbjct: 374 HMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSPNYSVFS 433

Query: 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
            L+DG CK  N     L  + + K G   +   Y  ++ RL + G +D A  VF+ M+ K
Sbjct: 434 WLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQKVFDQMQSK 493

Query: 250 ----DSFTYSSMVHNLCKAKRLPSASKLL 274
               DS  Y+++ +      +  +AS  L
Sbjct: 494 GLVGDSLVYATLAYTYLTEGKPVAASNTL 522



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 4/267 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           ++N ++   CK      A+ +   + K G   + VT+N LI GLCK GR++ A  +  E+
Sbjct: 221 SYNTVIALYCKKGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEM 280

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +   P+ +TYTT++    R    +  +++   M+  G       Y  ++    + G++
Sbjct: 281 AAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKM 340

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           KE    + +M    VQ D V+ NTLIN YCK G + +A  +  +M + G + +++T+  L
Sbjct: 341 KEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKAL 400

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249
           I G CKA  +  A+     M   GF  N   ++ +VD   K    D  + + + +  +  
Sbjct: 401 IHGFCKAKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGL 460

Query: 250 --DSFTYSSMVHNLCKAKRLPSASKLL 274
             D   Y S++  LC+   +  A K+ 
Sbjct: 461 PPDKAVYRSLIRRLCRKGLVDQAQKVF 487



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 2/263 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M     TP   T+  +++G C+    + A+++   ++  G +P + TYN +++ LC+ G+
Sbjct: 280 MAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGK 339

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           ++    +L E+ +     + +T  T++    +        ++   M   G   + F Y  
Sbjct: 340 MKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKA 399

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  F K   L EA +   QMV  G   +   ++ L++ +CK+   +A  L+ DE+ K+G
Sbjct: 400 LIHGFCKAKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRG 459

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              DK  +  LI  LC+ G +  A+   + M   G   +   Y  +      +GK   A 
Sbjct: 460 LPPDKAVYRSLIRRLCRKGLVDQAQKVFDQMQSKGLVGDSLVYATLAYTYLTEGKPVAAS 519

Query: 241 NVFESMEVKDSFTYSSMVHN-LC 262
           N  + M  K+    +  ++N LC
Sbjct: 520 NTLDGM-AKNQLYITPQIYNCLC 541



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 63/152 (41%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  +++G CK +  D A   F  +   GF P    ++ L+ G CK         I  EL
Sbjct: 396 TYKALIHGFCKAKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDEL 455

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G  P+   Y ++++   R        ++   M+ KG   D   Y T+   ++  G+ 
Sbjct: 456 MKRGLPPDKAVYRSLIRRLCRKGLVDQAQKVFDQMQSKGLVGDSLVYATLAYTYLTEGKP 515

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163
             A++ ++ M  + + +    YN L   Y  E
Sbjct: 516 VAASNTLDGMAKNQLYITPQIYNCLCTSYADE 547


>gi|26449752|dbj|BAC41999.1| unknown protein [Arabidopsis thaliana]
          Length = 593

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 8/272 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL-RTAR 65
           +P   ++N ++ GLC     D AL +F  + K+G  P  VT NI++  LC+ G +    +
Sbjct: 188 SPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGVIGNNNK 247

Query: 66  WILKELGDS--GHAPNAITYTTI-MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122
            +L+E+ DS   +AP  I   TI M  CF+N      LE+   M +K    D   Y  +I
Sbjct: 248 KLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADSVVYNVII 307

Query: 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
                 G +  A  +M  MV  GV  D+ +YNTLI+  CKEGK + A  L   M+  G  
Sbjct: 308 RGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGGVA 367

Query: 183 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242
            D+ ++ ++I GLC  G++  A   L  M K      +  +N ++D  G+ G    A++V
Sbjct: 368 PDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALSV 427

Query: 243 FE---SMEVKDS-FTYSSMVHNLCKAKRLPSA 270
                S  VK + +T ++++H   K  RL  A
Sbjct: 428 LNLMLSYGVKPNVYTNNALIHGYVKGGRLIDA 459



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 8/266 (3%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D   C +  + ++  LC     D AL + + +   G +P L+T+N L+ GLCKAG +  A
Sbjct: 116 DYDDCLSIHSSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKA 175

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
             +++E+ + G +PN ++Y T++K           L + + M + G   +      ++ A
Sbjct: 176 DGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHA 235

Query: 125 FVKIGRLKEATDYMEQMVTDGVQ----LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
             + G +      + + + D  Q    LDIV    L++   K G +  A  +  EM ++ 
Sbjct: 236 LCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKN 295

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D   + ++I GLC +GN+  A   +  M K G + ++  YN ++  L K+GK D A 
Sbjct: 296 VPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEAC 355

Query: 241 NVFESME----VKDSFTYSSMVHNLC 262
           ++  +M+      D  +Y  ++  LC
Sbjct: 356 DLHGTMQNGGVAPDQISYKVIIQGLC 381



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 100/216 (46%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   + P   T+N +++ LCK    D A  +   +Q  G  P+ ++Y ++I+GLC  G 
Sbjct: 326 MVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHGD 385

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           +  A   L  +  S   P  + +  ++    R       L +L+ M   G   + +    
Sbjct: 386 VNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALSVLNLMLSYGVKPNVYTNNA 445

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +I  +VK GRL +A     +M +  +  D  +YN L+   C  G L  A+ L DEM ++G
Sbjct: 446 LIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLRRG 505

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216
            + D  T+T L+ GLC  G +K A   L  +   G 
Sbjct: 506 CQPDIITYTELVRGLCWKGRLKKAESLLSRIQATGI 541



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 125/284 (44%), Gaps = 8/284 (2%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 64
           D+  CT    I+++   KN     AL +++ + +     + V YN++I+GLC +G +  A
Sbjct: 264 DIVICT----ILMDSCFKNGNVVQALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAA 319

Query: 65  RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124
              + ++   G  P+  TY T++    +  K+    ++   M+  G   D   Y  +I  
Sbjct: 320 YGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQG 379

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
               G +  A +++  M+   +  +++ +N +I+ Y + G   +A  +L+ M   G + +
Sbjct: 380 LCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALSVLNLMLSYGVKPN 439

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YT+  LI G  K G +  A      M       +   YN ++      G +  A  +++
Sbjct: 440 VYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAFQLYD 499

Query: 245 SMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284
            M  +    D  TY+ +V  LC   RL  A  LL     +G+ I
Sbjct: 500 EMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQATGITI 543



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N++++G  +   T +AL +   +  +G  P + T N LI G  K GRL  A W+
Sbjct: 403 PEVLLWNVVIDGYGRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWV 462

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             E+  +   P+  TY  ++         +L  ++   M R+G   D   Y  ++     
Sbjct: 463 KNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCW 522

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172
            GRLK+A   + ++   G+ +D V +  L   Y +  +   AYL+
Sbjct: 523 KGRLKKAESLLSRIQATGITIDHVPFLILAKKYTRLQRPGEAYLV 567


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 140/297 (47%), Gaps = 4/297 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   T N  + G C       AL     L   GF  + V+Y  LI GLCK G  R A  +
Sbjct: 136 PDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQL 195

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+ +       NA+ Y T++    +++      ++ S M  K  + D   Y  +I  F  
Sbjct: 196 LRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFI 255

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
           +G+LK+A D   +M+ + ++ D+ ++N L++ +CKEG+L+ A  +LD M  Q  + +  T
Sbjct: 256 VGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVST 315

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              L+DG CK   +K  +     M K G   N+  Y  ++D      +++ A  +F +M 
Sbjct: 316 FNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMS 375

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +    +  +Y+ M++  CK K++  A KL +      +        +++DGL  SG
Sbjct: 376 QRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSG 432



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 4/295 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   TFNI++N  C+      A  +   + K G+ P+++T N  IKG C  G++  A 
Sbjct: 99  INPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQAL 158

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               +L   G   + ++Y T++    +  + +  L++L  +  K    +   Y TVI   
Sbjct: 159 NFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGM 218

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K   + +A D   +MV   +  D+V+Y+ LI  +   GKL+ A  L ++M  +  + D 
Sbjct: 219 SKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDV 278

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT  IL+DG CK G +K A+  L+ M       N+  +N +VD   KD K+     VF  
Sbjct: 279 YTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAM 338

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296
           M  +    +  TY S++   C  K++  A K+  +  + GV     +   +++G 
Sbjct: 339 MMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGF 393



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 8/274 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   ++P   T++ ++ G        +A+ +F  +      P++ T+NIL+ G CK GR
Sbjct: 234 MVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGR 293

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L+ A+ +L  +      PN  T+ T++    ++RK K G  + + M ++G   +   YC+
Sbjct: 294 LKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCS 353

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           ++  +  + ++ +A      M   GV  ++ SYN +IN +CK  K++ A  L  EM  + 
Sbjct: 354 LMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKH 413

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
              D  T+  LIDGLCK+G I  A   +  M+  G   N+  YN I++ L    K D  I
Sbjct: 414 IIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLK-DQGI 472

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 274
                    +  T + ++  LC++ +L +A K+ 
Sbjct: 473 Q-------PNMHTDTILIKGLCQSGKLEAARKVF 499



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 148/304 (48%), Gaps = 12/304 (3%)

Query: 13  FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72
           FN +L  L K+++    L + + ++  G  P  VT+NILI   C+ G +  A  +L ++ 
Sbjct: 71  FNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKIL 130

Query: 73  DSGHAPNAITYTTIMK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             G+ P+ IT  T +K  C + + ++  L     +   G+  D   Y T+I    K+G  
Sbjct: 131 KMGYEPDIITLNTFIKGFCLKGQIHQ-ALNFHDKLVALGFHLDQVSYGTLINGLCKVGET 189

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
           + A   + ++    VQL+ V YNT+I+   K+  +  A+ L  EM  +    D  T++ L
Sbjct: 190 RAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSAL 249

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEV 248
           I G    G +K A   ++  NK+  ++   ++  +N +VD   K+G++  A NV + M +
Sbjct: 250 IRGFFIVGKLKDA---IDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMI 306

Query: 249 KD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           +D      T++++V   CK +++     +    +K G++       +++DG        +
Sbjct: 307 QDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNK 366

Query: 305 AKKI 308
           AKKI
Sbjct: 367 AKKI 370



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 47/171 (27%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           +T    ++NIM+NG CK +  D A+++F  +     +P++VTYN LI GLCK+G++  A 
Sbjct: 379 VTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAF 438

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            ++ E+ D G  PN ITY                  IL+A+                   
Sbjct: 439 QLVNEMHDRGQPPNIITYN----------------SILNAL------------------- 463

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
             + +LK+           G+Q ++ +   LI   C+ GKLEAA  + +++
Sbjct: 464 --LTKLKD----------QGIQPNMHTDTILIKGLCQSGKLEAARKVFEDL 502


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 4/281 (1%)

Query: 36  LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95
           + + G +P +VT+ IL+ GLCKA RL  A  +++ +G+ G  PNA+ +  IM    +  +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 96  YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155
                  +  M+  G +     Y  +I  F K  +L  A + +++M   G + + V+YNT
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215
            ++  CK GK++ A  L   M ++    D Y +T LIDGLC+AG +  A   L+ M   G
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSAS 271
                  YN I+  L K  +I+ A  +F+ M     + D  T+  MV   C+  R+  A 
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDAL 240

Query: 272 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312
            LL     +G+   +     ++D L  +G   EA ++  ++
Sbjct: 241 LLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEM 281



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 4/254 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    FN +++ LCK   +  A      ++  G  P +VTYN+LI G CK  +L  A  I
Sbjct: 43  PNALVFNGIMDALCKEGRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEI 102

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L+E+   GH PN +TY T +    +  K    L +  AM  K    D +GY T+I    +
Sbjct: 103 LQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQ 162

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
            G+L EA   +++M   G       YN +++  CK  ++  A+ L   M   G   D  T
Sbjct: 163 AGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLT 222

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             +++ G C+   I  A L L+ M   G       YN ++D L + G++  A  + + M 
Sbjct: 223 FGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMI 282

Query: 248 VK----DSFTYSSM 257
            +    +S TY+ M
Sbjct: 283 SRGLSPNSRTYALM 296



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M    + P   TF +M+ G C+    D+AL + + ++  G  P  V YN LI  L +AGR
Sbjct: 211 MTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGR 270

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMK 88
           +  A  +L+E+   G +PN+ TY  + K
Sbjct: 271 VSEAYRLLQEMISRGLSPNSRTYALMRK 298


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.139    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,689,105,480
Number of Sequences: 23463169
Number of extensions: 186629671
Number of successful extensions: 713893
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8059
Number of HSP's successfully gapped in prelim test: 4146
Number of HSP's that attempted gapping in prelim test: 547663
Number of HSP's gapped (non-prelim): 72977
length of query: 319
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 177
effective length of database: 9,027,425,369
effective search space: 1597854290313
effective search space used: 1597854290313
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 77 (34.3 bits)