Query 020976
Match_columns 319
No_of_seqs 655 out of 1490
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 06:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.7E-58 1E-62 405.0 39.9 318 1-318 463-786 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.9E-56 1.1E-60 392.2 40.2 311 8-318 435-751 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.9E-53 4.2E-58 372.1 33.1 307 1-315 149-455 (697)
4 PLN03081 pentatricopeptide (PP 100.0 9E-51 2E-55 355.3 32.7 307 2-318 251-560 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.2E-50 4.8E-55 360.6 33.3 310 2-317 280-621 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 7.3E-50 1.6E-54 357.3 31.8 308 2-318 214-521 (857)
7 PRK11788 tetratricopeptide rep 100.0 2.5E-24 5.4E-29 177.8 34.7 298 16-318 41-350 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.7E-23 3.6E-28 190.8 37.8 297 8-313 599-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-22 4.7E-27 183.6 38.2 304 7-316 462-800 (899)
10 PRK11788 tetratricopeptide rep 99.9 4.8E-23 1E-27 170.1 28.4 276 8-287 67-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.9E-20 4.1E-25 162.3 37.4 301 9-317 75-383 (656)
12 PRK15174 Vi polysaccharide exp 99.9 9.9E-20 2.1E-24 157.9 35.3 297 13-316 45-348 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-18 3.7E-23 150.5 37.7 304 6-315 156-571 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 5.7E-18 1.2E-22 147.3 37.5 298 12-315 129-496 (615)
15 PRK11447 cellulose synthase su 99.8 8.3E-17 1.8E-21 148.8 37.1 301 9-314 302-699 (1157)
16 PRK11447 cellulose synthase su 99.8 1.4E-16 3E-21 147.4 36.0 286 18-313 359-738 (1157)
17 KOG4626 O-linked N-acetylgluco 99.8 1.5E-17 3.2E-22 134.7 25.0 299 9-316 115-452 (966)
18 PRK10049 pgaA outer membrane p 99.8 8.4E-16 1.8E-20 136.3 36.9 301 9-315 48-422 (765)
19 PF13429 TPR_15: Tetratricopep 99.8 5.6E-19 1.2E-23 138.8 12.9 257 50-312 13-274 (280)
20 KOG4626 O-linked N-acetylgluco 99.8 3.4E-17 7.3E-22 132.7 23.0 300 9-316 149-486 (966)
21 TIGR00540 hemY_coli hemY prote 99.8 7.9E-16 1.7E-20 127.0 31.4 287 21-313 95-397 (409)
22 PF13429 TPR_15: Tetratricopep 99.8 6.7E-19 1.4E-23 138.4 12.5 265 8-279 7-276 (280)
23 PRK10049 pgaA outer membrane p 99.8 2.8E-15 6.1E-20 133.0 36.6 305 8-317 81-458 (765)
24 PRK10747 putative protoheme IX 99.8 1.4E-15 3E-20 124.9 31.4 279 23-312 97-387 (398)
25 KOG4422 Uncharacterized conser 99.8 1.6E-15 3.5E-20 117.9 29.5 307 6-316 203-591 (625)
26 KOG4422 Uncharacterized conser 99.8 6.7E-15 1.4E-19 114.6 28.2 303 10-317 116-464 (625)
27 KOG1126 DNA-binding cell divis 99.8 1.2E-15 2.6E-20 124.6 23.6 281 24-315 333-620 (638)
28 PRK14574 hmsH outer membrane p 99.8 6.3E-14 1.4E-18 122.9 35.8 292 17-313 109-477 (822)
29 COG2956 Predicted N-acetylgluc 99.7 5.8E-14 1.3E-18 105.4 29.2 287 23-317 48-349 (389)
30 COG3071 HemY Uncharacterized e 99.7 7.8E-14 1.7E-18 107.7 30.3 282 23-313 97-388 (400)
31 PRK14574 hmsH outer membrane p 99.7 1.5E-13 3.1E-18 120.7 36.1 297 15-316 73-446 (822)
32 PRK09782 bacteriophage N4 rece 99.7 3.7E-14 8E-19 126.8 31.7 258 10-277 477-737 (987)
33 PRK09782 bacteriophage N4 rece 99.7 7.8E-14 1.7E-18 124.8 32.3 259 44-313 476-738 (987)
34 PRK10747 putative protoheme IX 99.7 9.1E-14 2E-18 114.3 30.0 257 15-280 123-390 (398)
35 KOG1155 Anaphase-promoting com 99.7 1.5E-13 3.3E-18 108.0 28.3 287 18-312 235-533 (559)
36 TIGR00540 hemY_coli hemY prote 99.7 1.7E-13 3.7E-18 113.3 29.5 270 7-279 114-398 (409)
37 KOG2076 RNA polymerase III tra 99.7 2.5E-12 5.4E-17 109.0 32.9 304 6-313 135-510 (895)
38 PRK12370 invasion protein regu 99.6 1.2E-12 2.5E-17 112.4 29.0 266 42-316 253-536 (553)
39 KOG1126 DNA-binding cell divis 99.6 2.7E-13 5.8E-18 111.1 23.1 267 11-286 354-626 (638)
40 PRK12370 invasion protein regu 99.6 1.7E-12 3.7E-17 111.4 28.5 264 9-280 255-535 (553)
41 KOG2076 RNA polymerase III tra 99.6 7.4E-12 1.6E-16 106.2 31.1 270 7-278 170-510 (895)
42 TIGR02521 type_IV_pilW type IV 99.6 1.7E-12 3.6E-17 99.5 25.5 200 44-247 30-230 (234)
43 KOG1129 TPR repeat-containing 99.6 1.3E-13 2.8E-18 103.9 18.2 227 83-315 226-458 (478)
44 COG3071 HemY Uncharacterized e 99.6 1.9E-11 4.2E-16 94.7 29.0 268 11-285 119-395 (400)
45 TIGR02521 type_IV_pilW type IV 99.6 2.7E-12 5.7E-17 98.4 24.8 194 81-277 32-229 (234)
46 KOG1155 Anaphase-promoting com 99.6 2.8E-11 6E-16 95.6 30.1 248 59-314 241-494 (559)
47 KOG0495 HAT repeat protein [RN 99.6 5.2E-11 1.1E-15 98.0 32.2 299 13-319 553-884 (913)
48 KOG2003 TPR repeat-containing 99.6 3.7E-12 8E-17 100.5 24.1 278 19-302 428-710 (840)
49 COG2956 Predicted N-acetylgluc 99.6 7.6E-12 1.6E-16 94.3 24.6 256 47-311 38-307 (389)
50 KOG2002 TPR-containing nuclear 99.6 6.5E-12 1.4E-16 107.3 27.1 304 9-316 413-746 (1018)
51 KOG2002 TPR-containing nuclear 99.6 3.1E-12 6.7E-17 109.2 25.2 309 3-316 445-799 (1018)
52 PF12569 NARP1: NMDA receptor- 99.6 5.7E-11 1.2E-15 99.1 30.8 291 16-314 10-333 (517)
53 KOG0547 Translocase of outer m 99.6 3.4E-11 7.4E-16 95.7 26.8 190 118-312 363-563 (606)
54 PF13041 PPR_2: PPR repeat fam 99.5 2E-14 4.2E-19 80.6 6.2 50 8-57 1-50 (50)
55 KOG2003 TPR repeat-containing 99.5 1.8E-11 3.9E-16 96.7 24.7 183 128-315 503-689 (840)
56 KOG4318 Bicoid mRNA stability 99.5 7.5E-13 1.6E-17 111.9 16.9 264 2-301 17-286 (1088)
57 KOG1129 TPR repeat-containing 99.5 4.4E-12 9.6E-17 95.8 19.0 227 49-280 227-458 (478)
58 KOG0495 HAT repeat protein [RN 99.5 7E-10 1.5E-14 91.6 32.9 304 4-314 473-781 (913)
59 KOG1173 Anaphase-promoting com 99.5 1.2E-10 2.6E-15 94.2 27.3 286 5-297 239-533 (611)
60 PF13041 PPR_2: PPR repeat fam 99.5 1.5E-13 3.1E-18 77.1 6.1 50 43-92 1-50 (50)
61 KOG1173 Anaphase-promoting com 99.5 3.5E-10 7.7E-15 91.6 27.1 265 43-313 242-516 (611)
62 KOG1840 Kinesin light chain [C 99.5 7.7E-11 1.7E-15 97.3 23.9 236 80-315 199-479 (508)
63 KOG0547 Translocase of outer m 99.5 7.5E-11 1.6E-15 93.8 21.5 220 20-245 336-562 (606)
64 KOG4340 Uncharacterized conser 99.4 3.3E-10 7.1E-15 84.9 23.2 298 1-310 1-334 (459)
65 KOG1915 Cell cycle control pro 99.4 2.6E-09 5.6E-14 85.1 29.4 304 5-315 169-536 (677)
66 PRK11189 lipoprotein NlpI; Pro 99.4 6.5E-10 1.4E-14 87.8 26.3 223 59-290 40-274 (296)
67 KOG1840 Kinesin light chain [C 99.4 1E-10 2.3E-15 96.6 22.3 233 46-278 200-477 (508)
68 PRK11189 lipoprotein NlpI; Pro 99.4 8.3E-10 1.8E-14 87.3 25.6 218 94-317 40-267 (296)
69 COG3063 PilF Tfp pilus assembl 99.4 2.4E-09 5.2E-14 77.4 24.3 197 13-213 38-235 (250)
70 COG3063 PilF Tfp pilus assembl 99.4 9.3E-10 2E-14 79.4 22.1 191 120-313 40-234 (250)
71 KOG1174 Anaphase-promoting com 99.4 8.5E-09 1.8E-13 80.8 28.0 305 5-316 189-501 (564)
72 KOG4318 Bicoid mRNA stability 99.4 7.8E-11 1.7E-15 100.0 18.2 254 31-317 11-267 (1088)
73 PF12569 NARP1: NMDA receptor- 99.4 8.3E-09 1.8E-13 86.5 29.8 263 9-279 37-333 (517)
74 cd05804 StaR_like StaR_like; a 99.4 2.3E-08 5E-13 81.8 32.2 301 10-315 6-336 (355)
75 KOG1174 Anaphase-promoting com 99.4 3.5E-09 7.6E-14 82.9 25.3 277 6-290 228-509 (564)
76 PF04733 Coatomer_E: Coatomer 99.3 6.5E-11 1.4E-15 92.2 14.6 248 18-280 9-265 (290)
77 KOG1915 Cell cycle control pro 99.3 7.9E-08 1.7E-12 76.9 29.9 253 57-316 153-467 (677)
78 cd05804 StaR_like StaR_like; a 99.3 7.2E-08 1.6E-12 78.9 29.5 259 17-280 50-336 (355)
79 PF04733 Coatomer_E: Coatomer 99.2 1.5E-09 3.2E-14 84.8 16.1 252 53-319 9-269 (290)
80 PLN02789 farnesyltranstransfer 99.2 1.2E-07 2.7E-12 75.1 25.6 215 12-232 39-267 (320)
81 KOG2047 mRNA splicing factor [ 99.2 7E-07 1.5E-11 74.3 30.3 296 12-314 250-614 (835)
82 KOG1156 N-terminal acetyltrans 99.2 7E-07 1.5E-11 74.2 29.8 109 9-119 74-183 (700)
83 KOG0624 dsRNA-activated protei 99.1 1E-06 2.2E-11 67.9 27.9 295 13-318 41-373 (504)
84 KOG4162 Predicted calmodulin-b 99.1 1.8E-06 4E-11 73.2 30.2 305 6-314 319-782 (799)
85 KOG1128 Uncharacterized conser 99.1 7.5E-08 1.6E-12 80.9 21.5 220 77-316 395-617 (777)
86 PF12854 PPR_1: PPR repeat 99.1 2E-10 4.4E-15 57.8 3.7 33 4-36 1-33 (34)
87 KOG1070 rRNA processing protei 99.1 3.5E-07 7.6E-12 82.2 25.6 242 61-308 1441-1693(1710)
88 KOG1125 TPR repeat-containing 99.1 7.7E-08 1.7E-12 78.6 19.4 246 54-307 294-563 (579)
89 KOG1156 N-terminal acetyltrans 99.0 2.1E-06 4.6E-11 71.5 27.6 132 19-153 50-182 (700)
90 PRK04841 transcriptional regul 99.0 3.5E-06 7.7E-11 77.8 32.6 301 15-315 414-760 (903)
91 PLN02789 farnesyltranstransfer 99.0 1.1E-06 2.4E-11 69.7 25.2 212 47-263 39-267 (320)
92 KOG1125 TPR repeat-containing 99.0 1.4E-07 3E-12 77.2 20.0 247 18-271 293-562 (579)
93 TIGR03302 OM_YfiO outer membra 99.0 2.5E-07 5.3E-12 71.0 20.4 185 10-214 33-232 (235)
94 PRK14720 transcript cleavage f 99.0 1.1E-06 2.4E-11 77.8 25.4 149 9-179 30-178 (906)
95 PF12854 PPR_1: PPR repeat 99.0 9.3E-10 2E-14 55.4 3.9 34 280-313 1-34 (34)
96 TIGR03302 OM_YfiO outer membra 99.0 5E-07 1.1E-11 69.4 20.7 60 256-315 171-232 (235)
97 KOG1128 Uncharacterized conser 99.0 6.8E-07 1.5E-11 75.3 22.3 237 6-263 394-635 (777)
98 COG5010 TadD Flp pilus assembl 98.9 1.1E-06 2.4E-11 65.2 20.1 160 84-247 70-229 (257)
99 KOG1070 rRNA processing protei 98.9 1.5E-06 3.2E-11 78.4 24.3 239 28-273 1443-1693(1710)
100 PRK10370 formate-dependent nit 98.9 6.9E-07 1.5E-11 66.0 19.0 120 93-215 52-174 (198)
101 COG5010 TadD Flp pilus assembl 98.9 8.8E-07 1.9E-11 65.7 18.8 160 114-277 66-228 (257)
102 KOG0548 Molecular co-chaperone 98.9 1E-05 2.2E-10 66.1 25.4 89 18-109 10-99 (539)
103 KOG3081 Vesicle coat complex C 98.9 4.1E-06 8.9E-11 62.3 21.0 259 3-279 3-270 (299)
104 KOG2047 mRNA splicing factor [ 98.9 3.3E-05 7.1E-10 64.8 30.1 297 12-317 104-508 (835)
105 PRK10370 formate-dependent nit 98.9 4E-07 8.6E-12 67.3 15.7 162 16-194 22-186 (198)
106 KOG0624 dsRNA-activated protei 98.9 1.7E-05 3.6E-10 61.5 24.3 258 17-280 79-370 (504)
107 KOG3785 Uncharacterized conser 98.8 2E-05 4.4E-10 61.3 24.5 160 17-179 29-214 (557)
108 PRK15359 type III secretion sy 98.8 8.5E-07 1.8E-11 62.1 16.1 95 48-144 27-121 (144)
109 KOG3060 Uncharacterized conser 98.8 1.3E-05 2.8E-10 59.4 21.8 189 23-215 25-221 (289)
110 PRK04841 transcriptional regul 98.8 9.4E-06 2E-10 75.1 26.8 266 16-281 458-761 (903)
111 PRK15179 Vi polysaccharide bio 98.8 1E-06 2.2E-11 77.0 18.7 146 6-155 82-227 (694)
112 KOG2376 Signal recognition par 98.8 5.2E-05 1.1E-09 62.9 31.2 54 15-69 17-70 (652)
113 PRK15359 type III secretion sy 98.8 4.6E-07 9.9E-12 63.4 13.6 108 10-120 24-131 (144)
114 KOG4162 Predicted calmodulin-b 98.8 1.2E-05 2.5E-10 68.6 23.4 252 26-280 460-783 (799)
115 KOG3081 Vesicle coat complex C 98.8 5.8E-06 1.3E-10 61.6 19.2 224 11-249 42-271 (299)
116 COG4783 Putative Zn-dependent 98.8 4.7E-05 1E-09 61.8 25.6 182 78-280 272-454 (484)
117 KOG4340 Uncharacterized conser 98.8 1E-05 2.2E-10 61.4 20.6 163 9-181 43-209 (459)
118 PRK15179 Vi polysaccharide bio 98.8 4.3E-06 9.3E-11 73.2 21.1 136 41-179 82-217 (694)
119 KOG1914 mRNA cleavage and poly 98.7 7E-05 1.5E-09 61.6 29.6 126 187-313 368-499 (656)
120 KOG3617 WD40 and TPR repeat-co 98.7 1.3E-05 2.9E-10 68.9 22.6 278 9-314 756-1108(1416)
121 KOG3616 Selective LIM binding 98.7 5.4E-06 1.2E-10 70.5 20.0 161 92-274 744-905 (1636)
122 PRK14720 transcript cleavage f 98.7 8.9E-06 1.9E-10 72.3 21.7 229 43-297 29-268 (906)
123 TIGR02552 LcrH_SycD type III s 98.7 2.4E-06 5.1E-11 59.4 14.3 95 47-143 19-113 (135)
124 TIGR02552 LcrH_SycD type III s 98.6 2.8E-06 6.1E-11 59.0 14.0 98 80-179 17-114 (135)
125 KOG3060 Uncharacterized conser 98.6 4.8E-05 1E-09 56.4 20.2 172 6-181 47-222 (289)
126 KOG2376 Signal recognition par 98.6 0.00017 3.8E-09 59.9 28.2 143 165-311 356-516 (652)
127 KOG3785 Uncharacterized conser 98.6 1.6E-05 3.5E-10 61.9 18.3 190 86-280 291-490 (557)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 3.3E-06 7.2E-11 68.5 14.7 127 46-178 170-296 (395)
129 KOG0985 Vesicle coat protein c 98.6 0.00011 2.3E-09 65.0 24.2 56 117-178 1106-1161(1666)
130 KOG0985 Vesicle coat protein c 98.6 0.00014 2.9E-09 64.5 24.5 249 24-305 1089-1373(1666)
131 PF13812 PPR_3: Pentatricopept 98.6 1.5E-07 3.3E-12 47.7 4.2 33 11-43 2-34 (34)
132 PF09976 TPR_21: Tetratricopep 98.5 9E-06 2E-10 57.1 14.2 85 88-174 56-142 (145)
133 TIGR00756 PPR pentatricopeptid 98.5 1.8E-07 3.8E-12 47.9 4.1 33 12-44 2-34 (35)
134 KOG3616 Selective LIM binding 98.5 4E-05 8.7E-10 65.5 19.6 102 196-306 743-844 (1636)
135 COG4783 Putative Zn-dependent 98.5 0.00021 4.6E-09 58.1 22.8 139 89-249 315-454 (484)
136 PF09976 TPR_21: Tetratricopep 98.5 1.6E-05 3.4E-10 55.9 14.8 19 195-213 58-76 (145)
137 KOG3617 WD40 and TPR repeat-co 98.5 6E-05 1.3E-09 65.1 20.1 239 10-278 726-994 (1416)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.2E-05 2.5E-10 65.4 15.5 123 119-247 173-295 (395)
139 TIGR00756 PPR pentatricopeptid 98.4 5.7E-07 1.2E-11 45.9 4.2 33 47-79 2-34 (35)
140 PF10037 MRP-S27: Mitochondria 98.4 1.1E-05 2.3E-10 66.0 13.0 123 76-198 62-186 (429)
141 PF13812 PPR_3: Pentatricopept 98.4 6.7E-07 1.4E-11 45.3 4.0 33 46-78 2-34 (34)
142 KOG2053 Mitochondrial inherita 98.4 0.0014 3E-08 57.5 29.8 222 21-249 20-255 (932)
143 PF08579 RPM2: Mitochondrial r 98.4 9.5E-06 2.1E-10 52.2 9.6 76 16-91 31-115 (120)
144 PRK10866 outer membrane biogen 98.4 0.00017 3.6E-09 55.3 18.2 177 121-313 38-239 (243)
145 KOG2053 Mitochondrial inherita 98.4 0.0013 2.8E-08 57.7 24.8 220 56-282 20-257 (932)
146 PF10037 MRP-S27: Mitochondria 98.4 1E-05 2.2E-10 66.1 11.9 119 9-127 65-185 (429)
147 TIGR02795 tol_pal_ybgF tol-pal 98.3 3.9E-05 8.4E-10 51.8 12.9 98 12-109 4-105 (119)
148 KOG0548 Molecular co-chaperone 98.3 0.0004 8.7E-09 57.2 20.2 225 13-252 227-458 (539)
149 PF14938 SNAP: Soluble NSF att 98.3 0.00016 3.5E-09 57.0 16.4 204 47-252 37-269 (282)
150 TIGR02795 tol_pal_ybgF tol-pal 98.2 7.9E-05 1.7E-09 50.3 12.8 98 47-144 4-105 (119)
151 PRK15363 pathogenicity island 98.2 0.00016 3.5E-09 50.2 13.9 98 45-144 35-132 (157)
152 cd00189 TPR Tetratricopeptide 98.2 4.4E-05 9.5E-10 48.9 10.9 94 13-108 3-96 (100)
153 PF05843 Suf: Suppressor of fo 98.2 3.5E-05 7.5E-10 60.5 11.8 142 151-296 2-150 (280)
154 cd00189 TPR Tetratricopeptide 98.2 4.4E-05 9.6E-10 48.9 10.8 20 53-72 8-27 (100)
155 PF08579 RPM2: Mitochondrial r 98.2 2.9E-05 6.2E-10 50.0 9.1 32 94-125 39-71 (120)
156 PF12895 Apc3: Anaphase-promot 98.2 3.6E-06 7.8E-11 52.9 5.1 81 23-105 2-83 (84)
157 PF01535 PPR: PPR repeat; Int 98.2 2.7E-06 5.9E-11 41.9 3.5 29 12-40 2-30 (31)
158 PF01535 PPR: PPR repeat; Int 98.2 2.2E-06 4.8E-11 42.2 3.1 30 288-317 2-31 (31)
159 PRK02603 photosystem I assembl 98.2 0.00018 4E-09 52.1 14.3 83 153-236 38-122 (172)
160 PRK10866 outer membrane biogen 98.2 0.0014 2.9E-08 50.4 19.3 183 44-246 31-238 (243)
161 PRK15363 pathogenicity island 98.1 0.00012 2.6E-09 50.9 11.7 99 10-110 35-133 (157)
162 KOG1127 TPR repeat-containing 98.1 0.0012 2.6E-08 58.7 20.2 215 95-312 473-697 (1238)
163 PF05843 Suf: Suppressor of fo 98.1 0.00011 2.4E-09 57.7 13.1 130 11-143 2-135 (280)
164 PF12895 Apc3: Anaphase-promot 98.1 4.7E-06 1E-10 52.4 4.5 80 94-175 3-83 (84)
165 PLN03088 SGT1, suppressor of 98.1 0.00017 3.7E-09 58.8 14.4 93 16-110 8-100 (356)
166 PRK02603 photosystem I assembl 98.1 0.00028 6.1E-09 51.2 14.1 115 45-164 35-165 (172)
167 CHL00033 ycf3 photosystem I as 98.1 0.00022 4.7E-09 51.6 13.4 62 153-214 38-101 (168)
168 KOG1914 mRNA cleavage and poly 98.1 0.0044 9.6E-08 51.5 22.2 174 61-236 347-526 (656)
169 CHL00033 ycf3 photosystem I as 98.1 0.00028 6.1E-09 51.0 13.3 114 26-140 15-138 (168)
170 PLN03088 SGT1, suppressor of 98.1 0.00021 4.6E-09 58.2 14.0 92 51-144 8-99 (356)
171 PF04840 Vps16_C: Vps16, C-ter 98.1 0.0036 7.8E-08 50.0 24.4 109 187-311 179-287 (319)
172 KOG1127 TPR repeat-containing 98.0 0.00075 1.6E-08 59.9 16.7 182 26-213 474-658 (1238)
173 PF13525 YfiO: Outer membrane 98.0 0.00097 2.1E-08 49.8 15.6 169 123-306 13-198 (203)
174 PRK10153 DNA-binding transcrip 98.0 0.00089 1.9E-08 57.2 16.8 139 39-181 331-484 (517)
175 PF12688 TPR_5: Tetratrico pep 97.9 0.0009 1.9E-08 44.8 12.7 56 158-213 9-66 (120)
176 KOG1538 Uncharacterized conser 97.9 0.0057 1.2E-07 52.1 19.6 249 6-279 552-845 (1081)
177 PF14938 SNAP: Soluble NSF att 97.9 0.00065 1.4E-08 53.6 13.9 161 117-279 37-224 (282)
178 PRK10153 DNA-binding transcrip 97.9 0.0022 4.7E-08 54.9 17.6 146 74-224 331-490 (517)
179 PF06239 ECSIT: Evolutionarily 97.9 0.00027 5.9E-09 51.6 10.3 87 44-130 46-153 (228)
180 PF14559 TPR_19: Tetratricopep 97.9 7E-05 1.5E-09 44.8 6.3 53 21-74 2-54 (68)
181 PF13432 TPR_16: Tetratricopep 97.9 0.0001 2.3E-09 43.6 6.7 61 257-318 3-63 (65)
182 PF12688 TPR_5: Tetratrico pep 97.8 0.0025 5.3E-08 42.7 13.5 53 91-143 12-66 (120)
183 KOG1130 Predicted G-alpha GTPa 97.8 0.00037 8.1E-09 55.7 11.0 269 10-279 15-343 (639)
184 PF06239 ECSIT: Evolutionarily 97.8 0.00075 1.6E-08 49.4 11.7 36 165-200 118-153 (228)
185 COG4700 Uncharacterized protei 97.8 0.0052 1.1E-07 43.8 17.8 130 147-276 86-218 (251)
186 KOG1130 Predicted G-alpha GTPa 97.8 0.00059 1.3E-08 54.6 11.7 262 53-315 25-344 (639)
187 KOG0553 TPR repeat-containing 97.8 0.00046 9.9E-09 52.8 10.7 100 55-158 91-190 (304)
188 PF13414 TPR_11: TPR repeat; P 97.8 0.00018 3.9E-09 43.1 6.7 63 10-73 3-66 (69)
189 PF14559 TPR_19: Tetratricopep 97.7 0.00023 5E-09 42.5 6.7 50 128-178 4-53 (68)
190 PF13432 TPR_16: Tetratricopep 97.7 0.00023 4.9E-09 42.1 6.5 53 19-72 6-58 (65)
191 PF13525 YfiO: Outer membrane 97.7 0.011 2.3E-07 44.2 18.2 48 191-238 147-196 (203)
192 KOG0553 TPR repeat-containing 97.7 0.00076 1.6E-08 51.6 10.5 116 64-195 77-192 (304)
193 PF13414 TPR_11: TPR repeat; P 97.7 0.00022 4.8E-09 42.7 6.5 66 250-316 2-68 (69)
194 KOG2796 Uncharacterized conser 97.7 0.013 2.8E-07 44.4 17.1 136 153-290 180-323 (366)
195 COG4235 Cytochrome c biogenesi 97.7 0.0064 1.4E-07 46.9 15.0 101 78-180 154-257 (287)
196 KOG2796 Uncharacterized conser 97.6 0.005 1.1E-07 46.5 13.4 152 24-183 163-319 (366)
197 PRK10803 tol-pal system protei 97.6 0.0033 7.2E-08 48.7 13.1 88 56-143 154-245 (263)
198 COG4235 Cytochrome c biogenesi 97.6 0.0051 1.1E-07 47.4 13.6 128 26-158 138-268 (287)
199 KOG2280 Vacuolar assembly/sort 97.6 0.043 9.4E-07 47.7 24.3 300 1-312 423-770 (829)
200 KOG0550 Molecular chaperone (D 97.6 0.02 4.4E-07 46.2 16.6 83 197-279 261-349 (486)
201 KOG2041 WD40 repeat protein [G 97.5 0.03 6.5E-07 48.4 18.5 187 43-249 690-907 (1189)
202 COG4700 Uncharacterized protei 97.5 0.015 3.2E-07 41.6 17.4 132 112-245 86-218 (251)
203 KOG0550 Molecular chaperone (D 97.5 0.031 6.6E-07 45.2 17.9 88 161-249 260-350 (486)
204 COG3898 Uncharacterized membra 97.5 0.038 8.2E-07 44.4 29.7 279 23-314 97-391 (531)
205 PRK15331 chaperone protein Sic 97.4 0.016 3.5E-07 40.7 13.1 88 54-143 46-133 (165)
206 PRK10803 tol-pal system protei 97.4 0.0047 1E-07 47.9 11.6 53 161-213 154-208 (263)
207 PF03704 BTAD: Bacterial trans 97.4 0.0022 4.7E-08 45.1 8.9 52 89-141 71-122 (146)
208 PF03704 BTAD: Bacterial trans 97.4 0.0016 3.5E-08 45.8 8.2 72 46-118 63-139 (146)
209 PF13281 DUF4071: Domain of un 97.4 0.055 1.2E-06 44.0 18.4 163 116-280 142-334 (374)
210 PF13371 TPR_9: Tetratricopept 97.3 0.0025 5.3E-08 38.6 7.5 56 18-74 3-58 (73)
211 PF08631 SPO22: Meiosis protei 97.3 0.059 1.3E-06 42.5 24.8 163 20-185 3-192 (278)
212 PRK15331 chaperone protein Sic 97.3 0.011 2.5E-07 41.5 10.9 94 14-109 41-134 (165)
213 PF13371 TPR_9: Tetratricopept 97.2 0.003 6.4E-08 38.2 7.3 55 54-109 4-58 (73)
214 COG4105 ComL DNA uptake lipopr 97.2 0.055 1.2E-06 41.0 18.3 70 126-195 45-116 (254)
215 PF12921 ATP13: Mitochondrial 97.2 0.0095 2.1E-07 40.3 10.0 49 76-124 48-97 (126)
216 PF10300 DUF3808: Protein of u 97.2 0.075 1.6E-06 45.3 17.6 160 153-315 191-376 (468)
217 PF13424 TPR_12: Tetratricopep 97.2 0.0015 3.3E-08 40.2 5.8 63 252-314 6-74 (78)
218 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.035 7.5E-07 45.9 14.4 66 7-74 72-141 (453)
219 PF13424 TPR_12: Tetratricopep 97.2 0.0012 2.6E-08 40.6 5.0 63 10-72 5-73 (78)
220 PF12921 ATP13: Mitochondrial 97.2 0.015 3.3E-07 39.3 10.5 86 9-94 1-102 (126)
221 COG3118 Thioredoxin domain-con 97.1 0.084 1.8E-06 40.9 15.0 147 54-204 143-291 (304)
222 PF13281 DUF4071: Domain of un 97.1 0.11 2.5E-06 42.2 19.9 35 220-254 305-339 (374)
223 KOG2280 Vacuolar assembly/sort 97.1 0.19 4.1E-06 44.0 22.6 285 11-311 472-795 (829)
224 PF04840 Vps16_C: Vps16, C-ter 97.1 0.12 2.5E-06 41.6 25.7 110 151-276 178-287 (319)
225 PF09205 DUF1955: Domain of un 97.0 0.046 1E-06 36.7 12.1 137 161-318 13-152 (161)
226 KOG2610 Uncharacterized conser 97.0 0.043 9.3E-07 43.2 13.0 114 129-245 117-234 (491)
227 KOG2041 WD40 repeat protein [G 96.9 0.24 5.3E-06 43.2 18.3 226 61-314 679-951 (1189)
228 KOG1538 Uncharacterized conser 96.9 0.26 5.6E-06 42.6 18.3 217 14-248 602-845 (1081)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.18 4E-06 41.8 15.5 66 112-179 72-141 (453)
230 KOG2610 Uncharacterized conser 96.8 0.072 1.6E-06 42.0 12.4 150 23-175 116-272 (491)
231 KOG0543 FKBP-type peptidyl-pro 96.8 0.047 1E-06 44.1 11.7 91 18-109 216-320 (397)
232 smart00299 CLH Clathrin heavy 96.7 0.11 2.3E-06 36.2 15.4 20 124-143 16-35 (140)
233 COG3898 Uncharacterized membra 96.6 0.29 6.2E-06 39.7 25.9 258 47-311 84-354 (531)
234 KOG3941 Intermediate in Toll s 96.6 0.026 5.7E-07 43.2 8.8 48 9-56 66-118 (406)
235 PF10300 DUF3808: Protein of u 96.6 0.42 9.1E-06 40.9 17.2 179 28-213 175-375 (468)
236 COG3118 Thioredoxin domain-con 96.6 0.26 5.5E-06 38.4 16.3 51 126-177 145-195 (304)
237 PF04053 Coatomer_WDAD: Coatom 96.5 0.16 3.4E-06 42.8 13.9 157 124-311 270-427 (443)
238 COG1729 Uncharacterized protei 96.4 0.074 1.6E-06 40.7 10.1 93 187-280 144-244 (262)
239 PF13512 TPR_18: Tetratricopep 96.4 0.12 2.5E-06 35.7 10.1 72 192-263 17-94 (142)
240 KOG0543 FKBP-type peptidyl-pro 96.3 0.19 4.1E-06 40.8 12.6 123 123-247 216-353 (397)
241 COG1729 Uncharacterized protei 96.3 0.11 2.3E-06 39.9 10.8 97 152-249 144-244 (262)
242 KOG1920 IkappaB kinase complex 96.3 0.91 2E-05 42.3 21.2 82 188-278 942-1026(1265)
243 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.49 1.1E-05 39.2 25.4 126 187-314 399-530 (660)
244 KOG1585 Protein required for f 96.3 0.33 7.3E-06 36.7 15.0 202 46-274 32-250 (308)
245 COG4649 Uncharacterized protei 96.3 0.25 5.5E-06 35.1 13.1 132 45-179 59-196 (221)
246 PF13428 TPR_14: Tetratricopep 96.3 0.025 5.3E-07 30.2 5.3 28 12-39 3-30 (44)
247 PRK11906 transcriptional regul 96.2 0.57 1.2E-05 39.1 15.9 111 96-209 320-431 (458)
248 COG3629 DnrI DNA-binding trans 96.2 0.093 2E-06 40.8 10.2 79 45-124 153-236 (280)
249 KOG4555 TPR repeat-containing 96.2 0.2 4.4E-06 33.7 10.6 53 55-108 53-105 (175)
250 PF04053 Coatomer_WDAD: Coatom 96.1 0.19 4E-06 42.4 12.3 156 18-209 269-426 (443)
251 KOG4555 TPR repeat-containing 96.1 0.18 4E-06 33.9 9.5 90 89-180 52-145 (175)
252 PF13428 TPR_14: Tetratricopep 96.1 0.03 6.5E-07 29.8 5.0 40 252-292 2-41 (44)
253 PF13512 TPR_18: Tetratricopep 96.0 0.29 6.3E-06 33.7 12.6 82 13-94 13-96 (142)
254 PF13170 DUF4003: Protein of u 96.0 0.59 1.3E-05 37.2 14.2 128 26-155 78-222 (297)
255 COG4105 ComL DNA uptake lipopr 96.0 0.51 1.1E-05 36.0 20.1 165 45-212 35-231 (254)
256 KOG1941 Acetylcholine receptor 95.9 0.57 1.2E-05 37.7 13.2 54 156-209 128-186 (518)
257 PF07035 Mic1: Colon cancer-as 95.9 0.39 8.4E-06 34.3 13.6 134 135-279 14-148 (167)
258 KOG1941 Acetylcholine receptor 95.9 0.7 1.5E-05 37.2 17.9 227 20-247 16-273 (518)
259 KOG3941 Intermediate in Toll s 95.9 0.098 2.1E-06 40.3 8.5 87 44-130 66-173 (406)
260 KOG1258 mRNA processing protei 95.8 1.1 2.3E-05 38.6 22.8 129 12-143 47-179 (577)
261 KOG1585 Protein required for f 95.8 0.6 1.3E-05 35.4 15.4 207 11-244 32-251 (308)
262 smart00299 CLH Clathrin heavy 95.8 0.4 8.7E-06 33.3 15.8 127 153-298 10-137 (140)
263 COG5107 RNA14 Pre-mRNA 3'-end 95.6 1.1 2.4E-05 37.2 18.8 144 82-231 399-546 (660)
264 PF09205 DUF1955: Domain of un 95.5 0.47 1E-05 32.1 12.4 141 20-182 12-152 (161)
265 PF10602 RPN7: 26S proteasome 95.4 0.38 8.2E-06 35.0 10.2 63 46-108 37-101 (177)
266 COG3629 DnrI DNA-binding trans 95.4 0.23 5E-06 38.7 9.4 80 115-195 153-237 (280)
267 PF04184 ST7: ST7 protein; In 95.4 1.4 3E-05 37.2 18.0 60 154-213 263-323 (539)
268 KOG2114 Vacuolar assembly/sort 95.3 2.1 4.5E-05 38.6 21.2 53 255-311 709-761 (933)
269 PF10602 RPN7: 26S proteasome 95.3 0.42 9.1E-06 34.8 10.0 96 11-106 37-139 (177)
270 PF07035 Mic1: Colon cancer-as 95.3 0.72 1.6E-05 33.0 15.6 31 173-203 17-47 (167)
271 PF08631 SPO22: Meiosis protei 95.2 1.2 2.7E-05 35.2 22.9 123 56-179 4-150 (278)
272 PF13176 TPR_7: Tetratricopept 95.1 0.081 1.8E-06 26.7 4.3 23 289-311 2-24 (36)
273 KOG4570 Uncharacterized conser 95.1 0.44 9.6E-06 37.4 9.8 99 215-314 59-163 (418)
274 PF11207 DUF2989: Protein of u 95.1 0.58 1.3E-05 34.4 10.0 79 55-135 117-198 (203)
275 PF13176 TPR_7: Tetratricopept 95.0 0.071 1.5E-06 26.9 3.9 23 13-35 2-24 (36)
276 PF00637 Clathrin: Region in C 94.7 0.049 1.1E-06 38.0 3.9 85 156-247 13-97 (143)
277 KOG1550 Extracellular protein 94.7 2.9 6.2E-05 36.9 24.6 275 26-315 228-538 (552)
278 COG0457 NrfG FOG: TPR repeat [ 94.6 1.4 3E-05 33.1 27.2 220 59-280 37-265 (291)
279 PRK11906 transcriptional regul 94.6 2.4 5.2E-05 35.6 16.2 112 130-246 319-433 (458)
280 PF07719 TPR_2: Tetratricopept 94.5 0.17 3.7E-06 24.8 4.6 29 288-316 3-31 (34)
281 KOG4570 Uncharacterized conser 94.5 0.33 7.2E-06 38.1 7.9 103 5-109 59-164 (418)
282 COG0457 NrfG FOG: TPR repeat [ 94.5 1.5 3.3E-05 32.9 27.2 221 93-315 36-265 (291)
283 COG4649 Uncharacterized protei 94.3 1.4 2.9E-05 31.6 12.9 121 127-247 70-194 (221)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 94.2 0.44 9.6E-06 30.1 6.6 45 63-107 25-69 (103)
285 PF13431 TPR_17: Tetratricopep 94.1 0.085 1.8E-06 26.2 2.9 32 274-306 2-33 (34)
286 PF04184 ST7: ST7 protein; In 94.1 3.3 7.1E-05 35.1 16.8 76 118-193 262-339 (539)
287 KOG2114 Vacuolar assembly/sort 93.9 4.7 0.0001 36.5 16.7 217 11-248 284-518 (933)
288 PF07079 DUF1347: Protein of u 93.9 3.3 7.2E-05 34.6 27.7 51 261-313 472-522 (549)
289 PF13431 TPR_17: Tetratricopep 93.8 0.099 2.2E-06 26.0 2.8 22 44-65 12-33 (34)
290 PF09613 HrpB1_HrpK: Bacterial 93.7 1.7 3.7E-05 30.7 13.2 51 92-144 22-73 (160)
291 PF02284 COX5A: Cytochrome c o 93.7 1.1 2.5E-05 28.7 9.1 47 63-109 28-74 (108)
292 PRK15180 Vi polysaccharide bio 93.7 3.8 8.2E-05 34.6 14.4 121 91-215 300-421 (831)
293 PF02284 COX5A: Cytochrome c o 93.7 1.2 2.5E-05 28.7 9.2 79 9-88 7-87 (108)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 93.6 0.47 1E-05 30.0 5.9 45 269-313 25-69 (103)
295 KOG1464 COP9 signalosome, subu 93.4 2.9 6.2E-05 32.4 14.7 149 156-305 71-250 (440)
296 PF00515 TPR_1: Tetratricopept 93.4 0.25 5.4E-06 24.3 4.0 27 253-279 3-29 (34)
297 PF09613 HrpB1_HrpK: Bacterial 93.3 2.1 4.5E-05 30.3 13.4 18 56-73 55-72 (160)
298 PF13374 TPR_10: Tetratricopep 93.2 0.28 6E-06 25.4 4.2 27 11-37 3-29 (42)
299 PF07079 DUF1347: Protein of u 92.8 5.2 0.00011 33.6 22.8 138 20-162 16-179 (549)
300 PF13929 mRNA_stabil: mRNA sta 92.7 4 8.7E-05 32.1 15.5 61 148-208 200-261 (292)
301 PF00637 Clathrin: Region in C 92.7 0.075 1.6E-06 37.1 1.8 84 16-106 13-96 (143)
302 COG2976 Uncharacterized protei 92.6 3 6.6E-05 30.6 13.4 126 151-281 55-189 (207)
303 PF13762 MNE1: Mitochondrial s 92.6 2.5 5.5E-05 29.4 9.0 100 34-133 26-133 (145)
304 KOG1550 Extracellular protein 92.4 7.3 0.00016 34.4 18.0 177 131-316 228-427 (552)
305 PF13374 TPR_10: Tetratricopep 92.3 0.5 1.1E-05 24.4 4.4 28 287-314 3-30 (42)
306 PF04097 Nic96: Nup93/Nic96; 92.1 8.7 0.00019 34.5 21.0 43 15-58 116-158 (613)
307 PF13181 TPR_8: Tetratricopept 92.0 0.71 1.5E-05 22.5 4.5 28 288-315 3-30 (34)
308 KOG1920 IkappaB kinase complex 92.0 11 0.00025 35.7 21.3 80 157-248 946-1027(1265)
309 PF00515 TPR_1: Tetratricopept 92.0 0.56 1.2E-05 22.9 4.1 27 12-38 3-29 (34)
310 PF11207 DUF2989: Protein of u 92.0 2.1 4.5E-05 31.6 8.3 80 124-205 116-198 (203)
311 PF13174 TPR_6: Tetratricopept 91.7 0.46 9.9E-06 22.9 3.6 24 292-315 6-29 (33)
312 COG4455 ImpE Protein of avirul 91.5 2.1 4.5E-05 32.0 7.9 77 12-89 3-81 (273)
313 COG4785 NlpI Lipoprotein NlpI, 91.5 4.7 0.0001 30.3 17.0 28 116-143 100-127 (297)
314 COG1747 Uncharacterized N-term 91.5 8.2 0.00018 33.0 20.6 179 9-195 65-249 (711)
315 KOG4234 TPR repeat-containing 91.4 1.7 3.8E-05 32.0 7.3 87 193-280 103-197 (271)
316 PF02259 FAT: FAT domain; Int 91.2 7.3 0.00016 31.9 21.8 192 16-213 4-212 (352)
317 PF07721 TPR_4: Tetratricopept 91.2 0.4 8.8E-06 22.0 2.8 22 289-310 4-25 (26)
318 TIGR03504 FimV_Cterm FimV C-te 91.2 0.69 1.5E-05 24.6 4.0 26 257-282 5-30 (44)
319 COG2976 Uncharacterized protei 91.0 4.9 0.00011 29.5 12.6 128 185-316 54-189 (207)
320 COG4455 ImpE Protein of avirul 90.8 2.9 6.3E-05 31.3 8.0 75 118-193 4-80 (273)
321 TIGR02508 type_III_yscG type I 90.8 3 6.6E-05 26.7 7.2 80 200-282 20-99 (115)
322 PF07719 TPR_2: Tetratricopept 90.7 0.89 1.9E-05 22.1 4.1 26 13-38 4-29 (34)
323 PF10579 Rapsyn_N: Rapsyn N-te 90.4 1.2 2.6E-05 27.0 4.9 47 263-309 18-66 (80)
324 KOG4234 TPR repeat-containing 90.3 4.4 9.6E-05 29.9 8.5 91 160-251 105-199 (271)
325 PF02259 FAT: FAT domain; Int 90.3 9 0.0002 31.4 19.1 192 51-248 4-212 (352)
326 PF13929 mRNA_stabil: mRNA sta 90.1 7.9 0.00017 30.5 18.3 135 163-297 141-289 (292)
327 TIGR02561 HrpB1_HrpK type III 89.9 5.1 0.00011 28.0 12.5 50 93-144 23-73 (153)
328 PRK09687 putative lyase; Provi 89.1 9.9 0.00021 30.2 28.5 234 43-297 35-278 (280)
329 TIGR02561 HrpB1_HrpK type III 89.0 6 0.00013 27.7 12.4 50 58-109 23-73 (153)
330 KOG0276 Vesicle coat complex C 89.0 15 0.00033 32.2 12.8 102 124-246 646-747 (794)
331 KOG0276 Vesicle coat complex C 88.5 11 0.00025 32.9 10.9 133 12-177 616-748 (794)
332 TIGR03504 FimV_Cterm FimV C-te 88.4 1.7 3.8E-05 23.1 4.1 20 158-177 7-26 (44)
333 PF13181 TPR_8: Tetratricopept 88.2 1.9 4.1E-05 20.9 4.2 27 12-38 3-29 (34)
334 PF06552 TOM20_plant: Plant sp 88.0 8 0.00017 28.1 8.4 28 267-296 96-123 (186)
335 PF07575 Nucleopor_Nup85: Nup8 87.9 19 0.00041 32.0 12.8 163 117-294 374-538 (566)
336 PF13170 DUF4003: Protein of u 87.6 13 0.00028 29.8 21.0 132 96-229 78-226 (297)
337 KOG4077 Cytochrome c oxidase, 87.4 3.1 6.8E-05 28.0 5.7 45 270-314 68-112 (149)
338 KOG4648 Uncharacterized conser 87.4 6.6 0.00014 31.7 8.4 88 19-109 106-194 (536)
339 COG2909 MalT ATP-dependent tra 87.2 24 0.00053 32.5 26.1 222 90-311 425-684 (894)
340 PF07163 Pex26: Pex26 protein; 87.0 13 0.00028 29.2 13.2 89 85-173 88-181 (309)
341 PF10366 Vps39_1: Vacuolar sor 86.6 6.9 0.00015 25.8 7.1 28 252-279 40-67 (108)
342 TIGR02508 type_III_yscG type I 86.5 6.6 0.00014 25.3 7.7 86 25-118 20-105 (115)
343 PF14689 SPOB_a: Sensor_kinase 86.3 3.9 8.4E-05 23.7 5.2 30 285-314 22-51 (62)
344 COG4785 NlpI Lipoprotein NlpI, 85.8 13 0.00028 28.0 16.7 29 151-179 100-128 (297)
345 COG2909 MalT ATP-dependent tra 85.8 30 0.00064 32.1 23.7 191 125-315 425-647 (894)
346 KOG4648 Uncharacterized conser 85.7 7.6 0.00016 31.4 7.9 53 53-107 105-158 (536)
347 cd08819 CARD_MDA5_2 Caspase ac 85.5 6.8 0.00015 24.5 6.9 34 232-266 48-81 (88)
348 COG1747 Uncharacterized N-term 85.0 24 0.00053 30.4 23.6 165 78-249 64-234 (711)
349 PRK15180 Vi polysaccharide bio 85.0 23 0.00051 30.2 14.3 122 20-145 299-421 (831)
350 smart00028 TPR Tetratricopepti 84.9 2.1 4.7E-05 19.6 3.4 27 253-279 3-29 (34)
351 PRK09687 putative lyase; Provi 84.5 19 0.0004 28.7 25.8 217 78-314 35-262 (280)
352 KOG2063 Vacuolar assembly/sort 84.0 37 0.00081 31.8 16.5 27 47-73 506-532 (877)
353 COG3947 Response regulator con 83.7 20 0.00044 28.4 14.4 61 253-314 281-341 (361)
354 KOG4077 Cytochrome c oxidase, 83.6 8.9 0.00019 25.9 6.4 44 65-108 69-112 (149)
355 PF11846 DUF3366: Domain of un 83.5 8.7 0.00019 28.4 7.4 31 283-313 141-171 (193)
356 KOG4507 Uncharacterized conser 82.9 15 0.00032 32.2 9.0 87 57-144 619-705 (886)
357 PF09477 Type_III_YscG: Bacter 82.4 11 0.00024 24.6 8.1 80 24-110 20-99 (116)
358 KOG1464 COP9 signalosome, subu 81.6 23 0.0005 27.7 16.5 207 4-211 20-257 (440)
359 PF07163 Pex26: Pex26 protein; 81.0 25 0.00055 27.7 13.1 126 13-138 38-181 (309)
360 PF11846 DUF3366: Domain of un 80.8 13 0.00029 27.4 7.5 61 47-109 110-173 (193)
361 COG0735 Fur Fe2+/Zn2+ uptake r 80.6 14 0.00031 25.9 7.1 46 154-199 24-69 (145)
362 PF10579 Rapsyn_N: Rapsyn N-te 79.9 8.3 0.00018 23.6 4.8 45 197-241 18-64 (80)
363 PF06552 TOM20_plant: Plant sp 79.4 22 0.00047 26.0 8.3 42 131-180 96-137 (186)
364 PF11848 DUF3368: Domain of un 79.3 8.1 0.00018 21.0 5.0 33 20-52 12-44 (48)
365 PF04910 Tcf25: Transcriptiona 78.9 36 0.00079 28.2 18.9 29 79-107 39-67 (360)
366 PF13762 MNE1: Mitochondrial s 78.9 20 0.00042 25.1 11.3 101 69-169 26-134 (145)
367 KOG4507 Uncharacterized conser 78.8 23 0.0005 31.2 8.8 89 126-215 618-706 (886)
368 PRK09462 fur ferric uptake reg 78.7 8.5 0.00018 27.1 5.6 60 36-96 8-68 (148)
369 COG0735 Fur Fe2+/Zn2+ uptake r 78.6 19 0.0004 25.3 7.2 63 31-94 7-69 (145)
370 KOG0890 Protein kinase of the 78.4 94 0.002 32.7 24.4 148 15-172 1388-1540(2382)
371 PF11848 DUF3368: Domain of un 78.3 8.7 0.00019 20.8 4.8 35 260-294 11-45 (48)
372 cd00280 TRFH Telomeric Repeat 78.2 24 0.00052 25.8 7.8 20 89-108 120-139 (200)
373 COG5159 RPN6 26S proteasome re 77.7 33 0.00072 27.2 12.8 54 121-174 9-69 (421)
374 KOG0686 COP9 signalosome, subu 76.8 43 0.00094 28.0 14.2 174 116-293 151-351 (466)
375 PF14689 SPOB_a: Sensor_kinase 76.2 12 0.00027 21.6 4.9 21 156-176 29-49 (62)
376 KOG0686 COP9 signalosome, subu 75.5 47 0.001 27.8 13.9 64 46-109 151-216 (466)
377 PF11663 Toxin_YhaV: Toxin wit 75.2 4.5 9.7E-05 27.6 3.1 31 264-296 108-138 (140)
378 PF10345 Cohesin_load: Cohesin 75.0 64 0.0014 29.1 27.9 164 13-177 62-252 (608)
379 PF10345 Cohesin_load: Cohesin 74.6 66 0.0014 29.1 27.6 183 28-211 39-251 (608)
380 PF09986 DUF2225: Uncharacteri 74.3 35 0.00077 25.8 8.1 26 290-315 169-194 (214)
381 PRK10564 maltose regulon perip 74.1 7.6 0.00017 30.8 4.6 41 252-292 258-298 (303)
382 PF07575 Nucleopor_Nup85: Nup8 74.0 66 0.0014 28.8 16.9 60 219-278 404-465 (566)
383 PF09670 Cas_Cas02710: CRISPR- 73.2 54 0.0012 27.5 10.2 56 18-74 139-198 (379)
384 PF09454 Vps23_core: Vps23 cor 73.0 16 0.00035 21.4 4.8 48 8-56 6-53 (65)
385 COG5108 RPO41 Mitochondrial DN 72.9 37 0.00079 30.5 8.6 90 15-107 33-130 (1117)
386 COG3947 Response regulator con 72.8 47 0.001 26.5 15.3 70 152-222 281-355 (361)
387 PRK10564 maltose regulon perip 72.7 10 0.00023 30.0 5.0 36 153-188 260-295 (303)
388 KOG0403 Neoplastic transformat 72.4 60 0.0013 27.7 16.0 59 224-282 513-574 (645)
389 PRK11619 lytic murein transgly 72.1 79 0.0017 28.8 26.6 114 199-313 255-373 (644)
390 PF11663 Toxin_YhaV: Toxin wit 71.8 5.6 0.00012 27.2 3.0 33 125-159 105-137 (140)
391 PHA02875 ankyrin repeat protei 71.5 62 0.0013 27.4 16.8 79 17-103 6-88 (413)
392 PHA02875 ankyrin repeat protei 71.4 62 0.0014 27.4 16.3 195 3-219 23-229 (413)
393 PF11817 Foie-gras_1: Foie gra 71.1 43 0.00093 26.0 8.2 58 255-312 182-244 (247)
394 PF08424 NRDE-2: NRDE-2, neces 71.0 56 0.0012 26.7 16.3 99 112-212 16-129 (321)
395 PF08424 NRDE-2: NRDE-2, neces 70.5 57 0.0012 26.6 16.6 118 62-181 48-185 (321)
396 KOG2297 Predicted translation 70.0 56 0.0012 26.3 19.7 19 252-270 322-340 (412)
397 KOG0991 Replication factor C, 69.6 49 0.0011 25.5 12.1 138 48-195 133-282 (333)
398 KOG0991 Replication factor C, 68.6 52 0.0011 25.4 14.5 101 195-299 169-285 (333)
399 cd08819 CARD_MDA5_2 Caspase ac 68.5 27 0.00058 21.9 7.3 34 57-95 48-81 (88)
400 COG5108 RPO41 Mitochondrial DN 68.3 58 0.0013 29.4 8.8 73 50-125 33-113 (1117)
401 KOG2659 LisH motif-containing 67.9 52 0.0011 25.1 9.2 100 42-143 23-131 (228)
402 KOG2471 TPR repeat-containing 67.8 82 0.0018 27.3 13.3 275 21-299 28-382 (696)
403 KOG1258 mRNA processing protei 67.8 88 0.0019 27.7 28.5 101 197-300 378-489 (577)
404 cd07153 Fur_like Ferric uptake 67.4 21 0.00045 23.7 5.2 45 16-60 6-50 (116)
405 KOG4567 GTPase-activating prot 67.0 66 0.0014 25.9 9.8 70 205-275 263-342 (370)
406 PF12862 Apc5: Anaphase-promot 66.7 30 0.00066 21.9 6.5 17 295-311 50-66 (94)
407 PRK11639 zinc uptake transcrip 66.2 47 0.001 24.0 7.4 55 212-267 18-76 (169)
408 KOG4642 Chaperone-dependent E3 65.9 61 0.0013 25.1 10.3 84 159-246 19-104 (284)
409 PF12862 Apc5: Anaphase-promot 65.4 32 0.0007 21.8 6.5 54 20-73 8-69 (94)
410 PF01475 FUR: Ferric uptake re 65.4 20 0.00043 24.0 4.8 46 15-60 12-57 (120)
411 KOG4567 GTPase-activating prot 65.4 68 0.0015 25.8 7.9 70 135-209 263-342 (370)
412 PRK11639 zinc uptake transcrip 65.0 50 0.0011 23.9 7.7 60 36-96 17-76 (169)
413 KOG3364 Membrane protein invol 64.7 44 0.00096 23.1 9.1 66 44-109 31-100 (149)
414 PRK12798 chemotaxis protein; R 64.4 88 0.0019 26.5 19.3 50 94-143 126-176 (421)
415 PF10255 Paf67: RNA polymerase 64.4 88 0.0019 26.5 9.6 56 224-279 126-192 (404)
416 KOG1308 Hsp70-interacting prot 63.5 5.4 0.00012 32.1 1.9 50 58-108 127-176 (377)
417 PF11817 Foie-gras_1: Foie gra 63.3 47 0.001 25.8 7.1 61 152-212 180-245 (247)
418 PF09868 DUF2095: Uncharacteri 63.0 42 0.0009 22.2 6.1 24 17-40 68-91 (128)
419 KOG4642 Chaperone-dependent E3 62.7 70 0.0015 24.8 11.1 83 55-141 20-104 (284)
420 PF08311 Mad3_BUB1_I: Mad3/BUB 61.9 48 0.001 22.6 8.9 44 268-311 80-124 (126)
421 PF01475 FUR: Ferric uptake re 61.6 29 0.00062 23.3 5.0 48 255-302 11-58 (120)
422 cd07153 Fur_like Ferric uptake 61.6 35 0.00076 22.6 5.5 45 257-301 6-50 (116)
423 KOG1586 Protein required for f 61.5 74 0.0016 24.6 16.4 237 63-314 3-258 (288)
424 PF04190 DUF410: Protein of un 61.1 80 0.0017 24.8 17.1 30 218-247 88-117 (260)
425 cd00280 TRFH Telomeric Repeat 60.8 65 0.0014 23.7 9.6 22 157-178 118-139 (200)
426 PF09670 Cas_Cas02710: CRISPR- 60.8 1E+02 0.0022 26.0 11.3 55 124-179 140-198 (379)
427 PRK09462 fur ferric uptake reg 60.7 56 0.0012 23.0 7.5 34 96-129 33-66 (148)
428 PF14669 Asp_Glu_race_2: Putat 60.2 69 0.0015 23.8 11.6 52 224-275 136-205 (233)
429 KOG0376 Serine-threonine phosp 59.7 45 0.00097 28.5 6.5 105 51-160 10-115 (476)
430 PF14853 Fis1_TPR_C: Fis1 C-te 58.7 30 0.00066 19.3 4.9 35 256-292 6-40 (53)
431 KOG0376 Serine-threonine phosp 58.2 37 0.0008 29.0 5.8 106 16-126 10-116 (476)
432 PF09454 Vps23_core: Vps23 cor 58.1 26 0.00055 20.6 3.7 49 43-92 6-54 (65)
433 PRK13800 putative oxidoreducta 58.0 1.8E+02 0.0039 28.0 28.0 243 43-311 633-877 (897)
434 PRK11619 lytic murein transgly 57.6 1.5E+02 0.0033 27.1 29.7 175 129-310 255-463 (644)
435 PRK13342 recombination factor 56.6 1.3E+02 0.0027 25.7 19.4 31 164-194 244-274 (413)
436 PF00244 14-3-3: 14-3-3 protei 56.0 93 0.002 24.1 11.2 56 51-106 7-63 (236)
437 KOG2300 Uncharacterized conser 55.2 1.4E+02 0.0031 25.9 14.1 161 150-310 323-509 (629)
438 PF10255 Paf67: RNA polymerase 54.9 38 0.00081 28.6 5.4 63 185-247 122-191 (404)
439 PRK12798 chemotaxis protein; R 54.8 1.3E+02 0.0029 25.5 20.4 189 128-316 125-325 (421)
440 KOG2422 Uncharacterized conser 54.7 1.6E+02 0.0034 26.3 16.6 167 93-259 251-458 (665)
441 PF12926 MOZART2: Mitotic-spin 54.7 51 0.0011 20.6 8.5 42 31-72 29-70 (88)
442 KOG2066 Vacuolar assembly/sort 54.6 1.8E+02 0.0039 27.0 20.2 272 17-316 363-664 (846)
443 KOG2396 HAT (Half-A-TPR) repea 53.9 1.5E+02 0.0033 25.9 20.7 85 225-311 465-555 (568)
444 KOG4814 Uncharacterized conser 53.4 1.5E+02 0.0033 26.8 8.7 85 126-212 365-455 (872)
445 smart00386 HAT HAT (Half-A-TPR 53.3 23 0.00051 16.3 3.8 14 25-38 2-15 (33)
446 COG5187 RPN7 26S proteasome re 53.1 1.2E+02 0.0026 24.4 12.8 97 115-213 115-220 (412)
447 TIGR03581 EF_0839 conserved hy 52.6 67 0.0015 24.3 5.8 78 236-313 137-235 (236)
448 PF14669 Asp_Glu_race_2: Putat 52.5 96 0.0021 23.1 15.2 70 3-72 1-78 (233)
449 PF10475 DUF2450: Protein of u 52.4 1.2E+02 0.0026 24.3 9.5 114 120-244 103-221 (291)
450 PF02847 MA3: MA3 domain; Int 52.0 66 0.0014 21.1 7.0 20 122-141 9-28 (113)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 51.8 74 0.0016 21.7 7.9 87 16-105 32-124 (126)
452 PF03745 DUF309: Domain of unk 51.8 46 0.001 19.3 5.6 49 261-309 9-62 (62)
453 PF11838 ERAP1_C: ERAP1-like C 51.3 1.3E+02 0.0028 24.3 21.7 144 131-278 146-302 (324)
454 PRK10941 hypothetical protein; 51.1 1.2E+02 0.0027 24.0 10.6 77 47-124 183-260 (269)
455 KOG0687 26S proteasome regulat 50.9 1.4E+02 0.003 24.5 14.5 96 116-213 105-209 (393)
456 KOG0890 Protein kinase of the 50.6 3.5E+02 0.0076 29.1 20.1 61 220-280 1670-1731(2382)
457 PRK13342 recombination factor 50.2 1.6E+02 0.0035 25.1 17.1 15 128-142 187-201 (413)
458 PRK09857 putative transposase; 50.2 1.3E+02 0.0029 24.1 8.5 66 83-149 209-274 (292)
459 PF10475 DUF2450: Protein of u 49.7 1.4E+02 0.0029 24.1 9.8 50 88-143 106-155 (291)
460 KOG3364 Membrane protein invol 49.7 87 0.0019 21.8 8.9 68 77-144 29-100 (149)
461 KOG1839 Uncharacterized protei 49.3 2.8E+02 0.006 27.6 10.9 149 57-205 944-1119(1236)
462 PF02847 MA3: MA3 domain; Int 48.9 74 0.0016 20.8 6.5 22 15-36 7-28 (113)
463 COG4003 Uncharacterized protei 48.5 63 0.0014 19.9 5.6 21 55-75 41-61 (98)
464 PRK14958 DNA polymerase III su 48.3 1.9E+02 0.004 25.6 8.8 83 1-86 191-286 (509)
465 KOG0292 Vesicle coat complex C 47.9 2.5E+02 0.0055 26.7 9.6 29 184-212 671-699 (1202)
466 KOG3807 Predicted membrane pro 47.7 1.6E+02 0.0034 24.2 9.0 117 26-155 232-351 (556)
467 PF15297 CKAP2_C: Cytoskeleton 47.3 1.6E+02 0.0035 24.3 9.0 64 96-161 119-186 (353)
468 COG4259 Uncharacterized protei 47.2 78 0.0017 20.5 6.8 45 99-143 56-100 (121)
469 COG0790 FOG: TPR repeat, SEL1 46.9 1.5E+02 0.0032 23.6 21.2 150 23-181 54-222 (292)
470 cd08326 CARD_CASP9 Caspase act 46.4 71 0.0015 19.9 6.5 32 234-265 44-75 (84)
471 KOG0545 Aryl-hydrocarbon recep 46.0 1.4E+02 0.0031 23.3 8.5 94 187-280 180-293 (329)
472 PRK10941 hypothetical protein; 44.8 1.6E+02 0.0034 23.4 10.4 61 153-214 184-244 (269)
473 KOG2063 Vacuolar assembly/sort 44.6 2.9E+02 0.0063 26.4 20.2 116 12-127 506-638 (877)
474 smart00544 MA3 Domain in DAP-5 44.5 89 0.0019 20.5 10.2 23 190-212 7-29 (113)
475 PRK09857 putative transposase; 44.1 1.7E+02 0.0037 23.6 9.0 28 190-217 245-272 (292)
476 PF04090 RNA_pol_I_TF: RNA pol 43.9 1.4E+02 0.003 22.4 7.3 26 13-38 44-69 (199)
477 PF09868 DUF2095: Uncharacteri 43.7 97 0.0021 20.6 4.9 30 87-117 68-97 (128)
478 TIGR01914 cas_Csa4 CRISPR-asso 43.4 1.6E+02 0.0035 24.1 7.0 67 230-297 286-352 (354)
479 PF02184 HAT: HAT (Half-A-TPR) 43.3 42 0.00092 16.4 3.3 13 61-73 3-15 (32)
480 KOG1308 Hsp70-interacting prot 43.1 21 0.00046 29.0 2.2 90 92-184 126-216 (377)
481 PF10366 Vps39_1: Vacuolar sor 42.4 99 0.0021 20.4 7.8 26 153-178 42-67 (108)
482 PF12968 DUF3856: Domain of Un 42.0 1.1E+02 0.0024 20.8 8.3 62 251-312 55-126 (144)
483 PF04097 Nic96: Nup93/Nic96; 42.0 2.7E+02 0.0059 25.4 14.8 42 85-127 116-157 (613)
484 PF07678 A2M_comp: A-macroglob 41.8 1.2E+02 0.0025 23.7 6.1 28 219-246 131-158 (246)
485 PF09986 DUF2225: Uncharacteri 41.6 1.6E+02 0.0034 22.4 11.4 23 122-144 172-194 (214)
486 KOG4814 Uncharacterized conser 41.1 2E+02 0.0043 26.1 7.7 83 232-315 366-457 (872)
487 PF04190 DUF410: Protein of un 40.6 1.8E+02 0.0039 22.9 17.2 26 114-139 89-114 (260)
488 PRK14956 DNA polymerase III su 40.5 2.6E+02 0.0055 24.6 9.7 45 167-213 183-228 (484)
489 KOG1839 Uncharacterized protei 40.4 3.9E+02 0.0084 26.7 12.0 154 20-173 942-1122(1236)
490 PF11838 ERAP1_C: ERAP1-like C 39.9 2E+02 0.0044 23.2 19.2 146 96-247 146-306 (324)
491 PF02607 B12-binding_2: B12 bi 39.7 75 0.0016 19.1 4.0 39 262-300 12-50 (79)
492 PF10155 DUF2363: Uncharacteri 39.5 1.2E+02 0.0027 20.7 11.6 40 137-176 85-124 (126)
493 PF00244 14-3-3: 14-3-3 protei 38.9 1.8E+02 0.004 22.5 12.2 60 14-73 5-65 (236)
494 KOG2297 Predicted translation 38.8 2.1E+02 0.0046 23.2 13.7 69 162-240 267-341 (412)
495 PRK14962 DNA polymerase III su 38.7 2.7E+02 0.0059 24.4 11.5 136 182-318 175-316 (472)
496 COG0790 FOG: TPR repeat, SEL1 37.7 2.1E+02 0.0045 22.8 22.2 24 266-289 252-275 (292)
497 PF13934 ELYS: Nuclear pore co 37.5 1.9E+02 0.0041 22.2 15.0 71 190-263 113-184 (226)
498 PRK08691 DNA polymerase III su 37.1 3.5E+02 0.0075 25.2 9.7 84 27-113 181-278 (709)
499 TIGR03581 EF_0839 conserved hy 36.8 1.9E+02 0.0041 22.0 6.2 62 185-246 163-234 (236)
500 PF10963 DUF2765: Protein of u 36.2 1.1E+02 0.0024 19.1 4.8 31 6-36 12-42 (83)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-58 Score=405.01 Aligned_cols=318 Identities=16% Similarity=0.265 Sum_probs=306.8
Q ss_pred CCCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh
Q 020976 1 MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80 (319)
Q Consensus 1 M~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (319)
|++.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976 81 ITYTTIMKCCFRNRKYKLGLEILSAMKR--KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
.+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++|.+.|++|+..+|+.++.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999986 67899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 020976 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (319)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc----cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 239 a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
|.++|++|. .++..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++++|.+
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999995 4589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcc
Q 020976 315 AKIS 318 (319)
Q Consensus 315 ~~i~ 318 (319)
.|+.
T Consensus 783 ~Gi~ 786 (1060)
T PLN03218 783 DGIK 786 (1060)
T ss_pred cCCC
Confidence 8864
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.9e-56 Score=392.21 Aligned_cols=311 Identities=20% Similarity=0.300 Sum_probs=304.2
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh--CCCccChhhHHHHHHHHHhcCC
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT--DGVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999986 5789999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
+++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC----CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318 (319)
Q Consensus 246 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~ 318 (319)
|.+. +..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9854 889999999999999999999999999999999999999999999999999999999999999988763
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-53 Score=372.09 Aligned_cols=307 Identities=21% Similarity=0.324 Sum_probs=267.7
Q ss_pred CCCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh
Q 020976 1 MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80 (319)
Q Consensus 1 M~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (319)
|++.|+.||..+||.++..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence 34556666666666666666666666666666666643 56666777777777777777777777777666666777
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 020976 81 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
.+|+.++.+|.+.|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y 300 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGY 300 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHH
Confidence 777777777777777777777766677777778888899999999999999999999999964 5899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 020976 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (319)
++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++|+..+++.++.+|++.|++++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
++|++|..+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.
T Consensus 381 ~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999763
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9e-51 Score=355.31 Aligned_cols=307 Identities=17% Similarity=0.250 Sum_probs=291.8
Q ss_pred CCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976 2 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81 (319)
Q Consensus 2 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
.+.|+.||..+||.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 4568889999999999999999999999999999964 589999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
||+.++.+|++.|++++|.+++..|.+.|++||..+++.|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999964 68999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCCHHHHH
Q 020976 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK-IGFDSNLEAYNCIVDRLGKDGKIDHAI 240 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (319)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.++++.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 599999999999999999999999999
Q ss_pred HHHHhhc-cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976 241 NVFESME-VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318 (319)
Q Consensus 241 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~ 318 (319)
++++++. .++..+|++++.+|...|+++.|..+++++.+. .| +..+|..++..|++.|++++|.+++++|++.|+.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999986 458899999999999999999999999998754 44 5679999999999999999999999999999874
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-50 Score=360.58 Aligned_cols=310 Identities=17% Similarity=0.172 Sum_probs=210.0
Q ss_pred CCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976 2 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81 (319)
Q Consensus 2 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
++.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 34455555555555555555555555555555555555555555555555555555555555555555553 24555
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555444444444444
Q ss_pred hcCCHHHHHHHHH-------------------------------HHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHH
Q 020976 162 KEGKLEAAYLLLD-------------------------------EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210 (319)
Q Consensus 162 ~~~~~~~a~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (319)
+.|++++|.++|+ +|.. ++.||..||+.++.+|++.|+.+.+.+++..
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 4444444444444 4432 3566666666666666666666666666666
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHH
Q 020976 211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290 (319)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (319)
+.+.|+.++..++++++++|++.|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 666777777777788889999999999999999999 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-hhhc
Q 020976 291 AVVDGLRHSGCRREAKKIQSKIR-MAKI 317 (319)
Q Consensus 291 ~l~~~~~~~g~~~~a~~~~~~~~-~~~i 317 (319)
.++.+|.+.|.+++|.++|++|+ +.|+
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998 4554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.3e-50 Score=357.26 Aligned_cols=308 Identities=19% Similarity=0.240 Sum_probs=289.9
Q ss_pred CCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976 2 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81 (319)
Q Consensus 2 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
.+.|+.||+.+||.++.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|...|+.||..
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 4567788888889999999999999999999999864 688999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
||+.++.+|.+.|+++.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~ 365 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 368899999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 020976 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (319)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.++.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976 242 VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318 (319)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~ 318 (319)
+|++|..+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||..++.+|++.|..+.+.+++..+.+.|+.
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999986 59999999999999888888888888888888777653
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2.5e-24 Score=177.78 Aligned_cols=298 Identities=14% Similarity=0.069 Sum_probs=247.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHh
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIMKCCFR 92 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 92 (319)
....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999998743 3677899999999999999999999999987532222 2567888999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC----hhhHHHHHHHHHhcCCHHH
Q 020976 93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD----IVSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 168 (319)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998764 55678899999999999999999999999988643322 1245667788889999999
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (319)
|...++++.+.... +...+..+...+...|++++|..+++++.+.+......++..++.+|...|++++|...++++..
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999876433 45677888899999999999999999999764222346678899999999999999999998764
Q ss_pred C--CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhhcc
Q 020976 249 K--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH---SGCRREAKKIQSKIRMAKIS 318 (319)
Q Consensus 249 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~i~ 318 (319)
. +...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.+++
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 3 5556788899999999999999999998875 6888888888887764 56899999999999988765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.7e-23 Score=190.80 Aligned_cols=297 Identities=12% Similarity=0.036 Sum_probs=201.5
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+..+|..+...+...|++++|+..|+.+.+... .+...+..+...+...|++++|...|+++.... +.+..++..+.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3445555666666666666666666666555422 244555555666666666666666666655532 22455566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+.+...+ |+..++..+..++.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 66666666666666666665554 4455556666666667777777777777766642 34455666677777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
+|.+.+..+.+..+. +...+..+...|...|++++|...|+++.+.. +.+..++..+...+...|+ ++|...++++.
T Consensus 754 ~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 754 EAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 777777777665432 56667777777777778888888877777664 4566777777777777777 66777777665
Q ss_pred cC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
.. ++..+..+...+...|++++|.+.++++++.+.. ++.++..+..++.+.|++++|.+++++|.
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33 5667777888888889999999999999887654 78888888999999999999999998875
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.1e-22 Score=183.57 Aligned_cols=304 Identities=12% Similarity=-0.006 Sum_probs=157.5
Q ss_pred CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+++..+|..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++...++ .+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 34555666666666667777777776666655422 2444555556666666666666666666655432 244555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCH
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
...+.+.|++++|...++++.+.+ +.+...+..+...+.+.|++++|..+++.+... .+.+...|..+..++...|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCH
Confidence 555555555555555555554443 333344444445555555555555555554443 223344455555555555555
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC-------------------------------
Q 020976 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG------------------------------- 215 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------- 215 (319)
++|...++.+.+.... +...+..+...+...|++++|...++++.+..
T Consensus 618 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554443211 33344444444444444444444444444332
Q ss_pred --CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHH
Q 020976 216 --FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291 (319)
Q Consensus 216 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (319)
.+.+...+..+...+...|++++|.+.|+.+... +..++..++..+...|++++|.+.++++.+.. +.+...+..
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 775 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTA 775 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 1233344444444555555555555555544322 23344445555555555555555555555542 234555566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 292 VVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
+...|...|++++|.++|+++.+.+
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 6666666666666666666665543
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.8e-23 Score=170.14 Aligned_cols=276 Identities=14% Similarity=0.117 Sum_probs=228.8
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++++|..+|+++.+.. +++..++.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 145 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ 145 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence 3566899999999999999999999999987532222 3567889999999999999999999998753 34678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFD----GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 999999999999999999999987652221 1234567777889999999999999998763 34566788889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 020976 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (319)
.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999997644433567888999999999999999999999886 466677788999999999999999
Q ss_pred HHHHhhccC--CchhHHHHHHHHHc---cCChhHHHHHHHHHHHcCCccCHH
Q 020976 241 NVFESMEVK--DSFTYSSMVHNLCK---AKRLPSASKLLLSCLKSGVRILKS 287 (319)
Q Consensus 241 ~~~~~~~~~--~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 287 (319)
.+++++... +...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 303 ~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 303 ALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999987654 55677777777664 558999999999999988888776
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.9e-20 Score=162.35 Aligned_cols=301 Identities=13% Similarity=0.092 Sum_probs=240.2
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..++.+....|++++|++.|+++.+..+. +...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~ 152 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLR 152 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4455666777778899999999999999886433 67788888899999999999999999998753 235778888899
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
.+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+......++...+..+..++...|++++
T Consensus 153 ~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 153 TLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999887663 3333344333 3478889999999999998776433444555566778889999999
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH----HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG----ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (319)
|...+++..+.... +...+..+...+...|++++ |...++...+.. +.+...+..+...+...|++++|...++
T Consensus 231 A~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 231 AIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999987543 56777888999999999885 799999988864 4566788899999999999999999999
Q ss_pred hhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976 245 SMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK-SAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317 (319)
Q Consensus 245 ~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i 317 (319)
+.... ++..+..+...+...|++++|...++++... .|+. ..+..+..++...|+.++|...|++..+...
T Consensus 309 ~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 309 QSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 87754 5567788889999999999999999999876 3443 3344456788999999999999998876644
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=9.9e-20 Score=157.92 Aligned_cols=297 Identities=10% Similarity=-0.004 Sum_probs=245.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
...++..+.+.|++++|..+++........ +...+..++.+....|+++.|...++++....+. +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 345667788899999999999999887544 4566667777888899999999999999986433 67788889999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976 93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999999874 55677888899999999999999999998876532 233334333 347889999999999
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHhhcc
Q 020976 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH----AINVFESMEV 248 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 248 (319)
++.+.+....++...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++ |...|++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998876544455555666778889999999999999999875 5567788889999999999986 7899988765
Q ss_pred C---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 249 K---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 249 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
. +...+..+...+...|++++|...+++.+.... .+...+..+..++.+.|++++|...++++.+.+
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4 566888999999999999999999999998643 256778888899999999999999999887654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.7e-18 Score=150.49 Aligned_cols=304 Identities=14% Similarity=0.006 Sum_probs=205.4
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH---------------
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE--------------- 70 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------------- 70 (319)
+.|+...|..+..+|.+.|++++|++.++...+.+.. +...|..+..+|...|++++|...|..
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 4567777778888888888888888888887775332 556677777777777777766543322
Q ss_pred --------------------------------------------------------------------------------
Q 020976 71 -------------------------------------------------------------------------------- 70 (319)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (319)
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred -----HhhCC-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 71 -----LGDSG-HAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 71 -----~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
....+ ..| ....+..+..++...|++++|+..+++..+.. +.....|..+...+...|++++|...|++...
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22111 011 12334445555556677777777777776653 33345666677777777788888888777766
Q ss_pred CCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH
Q 020976 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223 (319)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (319)
.. +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++...+.. +.+...+
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~ 470 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY 470 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 52 335667777777788888888888888887765433 45566677777778888888888888877653 4456777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCc---hh-------HHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHH
Q 020976 224 NCIVDRLGKDGKIDHAINVFESMEVKDS---FT-------YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 293 (319)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (319)
..+..++...|++++|.+.|++....++ .. ++.....+...|++++|..++++.+.... .+...+..+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la 549 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 7888888888888888888887654321 11 11122233346888888888888776532 2445678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh
Q 020976 294 DGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
..+...|++++|.+.|++..+.
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 8999999999999998886543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=5.7e-18 Score=147.27 Aligned_cols=298 Identities=12% Similarity=-0.035 Sum_probs=236.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+... .+...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3556777889999999999999998874 57888999999999999999999999999998643 25778899999999
Q ss_pred hcCChhHHHHHHHHHHhCC-----------------------------CCCCcccHHHHHH-------------------
Q 020976 92 RNRKYKLGLEILSAMKRKG-----------------------------YTFDGFGYCTVIA------------------- 123 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~ll~------------------- 123 (319)
..|++++|+..+..+...+ .+++...+..+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999987654432211 0111111111100
Q ss_pred -----------HH------HHcCchHHHHHHHHHHHhCC--CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 020976 124 -----------AF------VKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184 (319)
Q Consensus 124 -----------~~------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (319)
.. ...+++++|.+.|+.....+ .+.....+..+...+...|++++|...+++..+..+. .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 00 11257889999999988764 2234567888888999999999999999999876432 4
Q ss_pred HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHH
Q 020976 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 261 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 261 (319)
...|..+...+...|++++|...++...+.+ +.+..++..+...+...|++++|...|++.... +...+..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 5678888888999999999999999998874 456788999999999999999999999988755 556777888899
Q ss_pred HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
...|++++|+..+++.++.. +.++..+..+..++...|++++|.+.|++..+.
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99999999999999998753 336788999999999999999999999986654
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=8.3e-17 Score=148.84 Aligned_cols=301 Identities=11% Similarity=0.033 Sum_probs=139.6
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-CHHHH------------HHHHHHHHhcCChhHHHHHHHHHhhCC
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTY------------NILIKGLCKAGRLRTARWILKELGDSG 75 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (319)
+...+..+...+.+.|++++|+..|++..+..... ....+ ......+.+.|++++|...|+++....
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44555556666666666666666666655532211 11111 111234445566666666666665542
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH----------------------------------
Q 020976 76 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV---------------------------------- 121 (319)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------------------------- 121 (319)
. .+...+..+..++...|++++|++.|+++.+.. +.+...+..+
T Consensus 382 P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 382 N-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2 234455555666666666666666666665442 2122222211
Q ss_pred --------HHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 020976 122 --------IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193 (319)
Q Consensus 122 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
...+...|++++|+..|++..+.. +.+...+..+...|.+.|++++|...++++.+..+. +...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 122334455566666666555542 223444555556666666666666666665543221 1111111111
Q ss_pred HHhccCChhHHHHHHHHHHhc---------------------------------------CCCCChhhHHHHHHHHHhcC
Q 020976 194 GLCKAGNIKGARLHLEYMNKI---------------------------------------GFDSNLEAYNCIVDRLGKDG 234 (319)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~~ 234 (319)
.+...++.++|...++.+... ..+.+...+..+...+.+.|
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 122222222222222211000 01222233344444455555
Q ss_pred CHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 235 KIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
++++|++.|+++... ++..+..++..|...|++++|.+.++...... +.+...+..+..++...|++++|.+++++
T Consensus 618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555555555554432 34455555555555555555555555544331 11333444445555555555555555555
Q ss_pred HHh
Q 020976 312 IRM 314 (319)
Q Consensus 312 ~~~ 314 (319)
+..
T Consensus 697 al~ 699 (1157)
T PRK11447 697 LIP 699 (1157)
T ss_pred Hhh
Confidence 443
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=1.4e-16 Score=147.43 Aligned_cols=286 Identities=11% Similarity=0.006 Sum_probs=191.7
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH--------------
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY-------------- 83 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------- 83 (319)
..+.+.|++++|++.|+++.+... .+...+..+...+...|++++|.+.|+++.+.... +...+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHH
Confidence 344555555556655555555422 23444555555555555555555555555543211 11111
Q ss_pred ----------------------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH
Q 020976 84 ----------------------------TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135 (319)
Q Consensus 84 ----------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 135 (319)
..+...+...|++++|++.+++..+.. +-++..+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 122333445677777777777777664 335556666777777777777777
Q ss_pred HHHHHHHhCCCccChhhHHHH--------------------------------------------HHHHHhcCCHHHHHH
Q 020976 136 DYMEQMVTDGVQLDIVSYNTL--------------------------------------------INLYCKEGKLEAAYL 171 (319)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~~~~~~a~~ 171 (319)
..++++.... +.+...+..+ ...+...|+.++|..
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 7777776542 1222222222 333444555555555
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--
Q 020976 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249 (319)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 249 (319)
+++. .+.+...+..+...+.+.|++++|...|+.+.+.. +.+...+..++..+...|++++|.+.++.+...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 5541 23355567788889999999999999999999874 556788999999999999999999999987754
Q ss_pred -CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCc--c---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR--I---LKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 250 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
++..+..+..++...|++++|.+++++++..... | +...+..+...+...|++++|...|++..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566777888899999999999999999875322 2 22456667888999999999999998874
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-17 Score=134.73 Aligned_cols=299 Identities=13% Similarity=0.065 Sum_probs=205.3
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh------
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT------ 82 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 82 (319)
-.++|..+...+-..|++++|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|.+..+. .|+...
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 4678999999999999999999999999986433 6788999999999999999998888887764 343322
Q ss_pred -----------------------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976 83 -----------------------------YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133 (319)
Q Consensus 83 -----------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 133 (319)
|..|.-.+-.+|+...|++.|++..+.+ +.-...|..|...|...+.++.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchH
Confidence 2222223333444444555554444432 2223445555555555555666
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
|...+.+..... +-....+..+...|...|+.+.|+..|++..+..+. -+..|+.+..++-..|++.+|...+.....
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 665555555431 223445555566666677777777777777665322 245778888888888888888888887776
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC---chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccC-HHHH
Q 020976 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL-KSAQ 289 (319)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 289 (319)
.. +......+.|...|...|.+++|..+|.....-. ...++.|...|-++|++++|+..+++.++ +.|+ ...|
T Consensus 349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 349 LC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred hC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 53 3344677778888888888888888887766543 34677788888888888888888888776 4665 3678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 290 KAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 290 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
+.+...|...|+++.|.+.+.+....+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 888888888888888888887765544
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=8.4e-16 Score=136.35 Aligned_cols=301 Identities=11% Similarity=-0.022 Sum_probs=169.6
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence 34457777777777788888888887776652 2345666677777777788888888777777652 22445 667777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHH-------------------------------
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY------------------------------- 137 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~------------------------------- 137 (319)
++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|+..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 7777777777777777777653 33444444444444444444433322
Q ss_pred ---------------HHHHHhC-CCccChh-hHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHhHHHHHHHH
Q 020976 138 ---------------MEQMVTD-GVQLDIV-SYN----TLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGL 195 (319)
Q Consensus 138 ---------------~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 195 (319)
++.+... ...|+.. .+. ..+.++...|++++|...|+.+.+.+.. |+. ....+..++
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 2232221 0011110 110 0122344556677777777776665422 222 122245566
Q ss_pred hccCChhHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc------------------hhH
Q 020976 196 CKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------------------FTY 254 (319)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~ 254 (319)
...|++++|...++.+.+..... .......+..++...|++++|.++++.+...++ ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 66777777777777665432100 123344455556666777777766666554321 123
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++....
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 344555666666666666666665542 224556666666666666666666666665543
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=5.6e-19 Score=138.77 Aligned_cols=257 Identities=17% Similarity=0.139 Sum_probs=89.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 020976 50 ILIKGLCKAGRLRTARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (319)
.+...+.+.|++++|.+++++..... .+.+...|..+...+...++++.|.+.++++...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44666667777777777775544332 22344455555556666677777777777777664 3355556666655 566
Q ss_pred CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHhccCChhHHHHH
Q 020976 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLH 207 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (319)
+++++|.++++...+. .++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777665543 2455556666777777777777777777766432 234556666777777777777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc---cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284 (319)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (319)
+++..+.. |.+......++..+...|+.+++.+++.... ..++..+..+..++...|+.++|+.++++..+.. +.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 77777753 3346666777777777777777666665543 2366777777777777788888888888777652 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 285 LKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
|+.....+.+++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6777777777888888888887776654
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=3.4e-17 Score=132.72 Aligned_cols=300 Identities=14% Similarity=0.050 Sum_probs=242.2
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCC--------------------------------CCC-HHHHHHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--------------------------------VPE-LVTYNILIKGL 55 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~-~~~~~~l~~~~ 55 (319)
.++.|..+..++...|+.+.|.+.|.+..+.++ .|. ...|..|...+
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f 228 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVF 228 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHH
Confidence 455666777777777777777777766655321 111 12345566666
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHH
Q 020976 56 CKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 134 (319)
-.+|+...|++.|++.... .|+ ...|..|...|...+.+++|...|.+..... +.....+..+...|...|+++-|
T Consensus 229 ~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 229 NAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred hhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHH
Confidence 6778888888888888764 444 6789999999999999999999999988764 55677788888889999999999
Q ss_pred HHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
+..+++..+.. +--...|+.+..++-..|++.+|.+.|.+....... .....+.+...+...|.++.|..+|....+.
T Consensus 306 I~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 306 IDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99999999862 223678999999999999999999999999986443 4567889999999999999999999998875
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC---chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccC-HHHHH
Q 020976 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL-KSAQK 290 (319)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 290 (319)
. +--....+.|...|-++|++++|...+++...-+ ...|+.+...|-..|+.+.|+..+.+.+.. .|. ...++
T Consensus 384 ~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhs 460 (966)
T KOG4626|consen 384 F-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHS 460 (966)
T ss_pred C-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHh
Confidence 3 3335778999999999999999999999887653 357888999999999999999999998864 554 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 291 AVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 291 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
.+...|...|+..+|+.-+++..+.+
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999998876543
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=7.9e-16 Score=127.04 Aligned_cols=287 Identities=11% Similarity=0.027 Sum_probs=212.7
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 020976 21 CKNRYTDNALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (319)
...|+++.|.+.+....+.. |+ ...+-....+....|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 34799999999998887753 44 3344455677888999999999999987753222223344457788899999999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHH-HHHHHH---HhcCCHHHHHHHHHH
Q 020976 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN-TLINLY---CKEGKLEAAYLLLDE 175 (319)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 175 (319)
...++.+.+.. |-++.....+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999886 667778889999999999999999999999988654 333232 111222 333333444445555
Q ss_pred HHHcCCC---CcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976 176 MEKQGFE---CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA---YNCIVDRLGKDGKIDHAINVFESMEVK 249 (319)
Q Consensus 176 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (319)
+.+..+. .+...+..+...+...|+.++|..++++..+.. |+... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 5554321 377888889999999999999999999999864 33331 111112223457888888888776544
Q ss_pred ---Cc--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 250 ---DS--FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 250 ---~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
++ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66 67778999999999999999999964444457898889999999999999999999998753
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=6.7e-19 Score=138.35 Aligned_cols=265 Identities=15% Similarity=0.154 Sum_probs=113.2
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
|+...+ .+...+.+.|++++|+++++...... .+.|...|..+.......++++.|.+.++++...+.. ++..+..+
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l 84 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 443444 56888899999999999997654443 2335566666777778899999999999999987544 67778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhcCC
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 165 (319)
+.. ...+++++|.+++....+. .+++..+...+..+.+.++++++..+++.+... ..+.+...|..+...+.+.|+
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred ccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 777 7889999999999887665 456777888999999999999999999998764 235677888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
.++|.+.+++..+..+. |......++..+...|+.+++..+++...+.. +.+...+..+..++...|+.++|...|++
T Consensus 162 ~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 162 PDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999987544 57778889999999999999999999888764 56777889999999999999999999998
Q ss_pred hcc---CCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 246 MEV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 246 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
... .|+.....+..++...|+.++|..+.++...
T Consensus 240 ~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 240 ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 765 2888899999999999999999999887654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=2.8e-15 Score=133.04 Aligned_cols=305 Identities=12% Similarity=-0.027 Sum_probs=225.1
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+...+..+...+...|++++|+..++++.+... .+.. +..+..++...|+.++|...++++.+..+. +...+..+.
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la 157 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYV 157 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 3566777888899999999999999999988633 3566 888889999999999999999999986433 455555666
Q ss_pred HHHHhcCChhHHHH----------------------------------------------HHHHHHhC-CCCCCcc-cHH
Q 020976 88 KCCFRNRKYKLGLE----------------------------------------------ILSAMKRK-GYTFDGF-GYC 119 (319)
Q Consensus 88 ~~~~~~~~~~~a~~----------------------------------------------~~~~~~~~-~~~~~~~-~~~ 119 (319)
.++...+..+.|++ .++.+.+. ...|+.. .+.
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 66655555554443 33333322 1112211 111
Q ss_pred ----HHHHHHHHcCchHHHHHHHHHHHhCCCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHHhHHHH
Q 020976 120 ----TVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYTHTIL 191 (319)
Q Consensus 120 ----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l 191 (319)
..+..+...|++++|+..|+.+...+.+ |+. ....+..++...|++++|...|+++.+..... .......+
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 1133456779999999999999887532 222 22335778999999999999999988654221 13445666
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhH
Q 020976 192 IDGLCKAGNIKGARLHLEYMNKIGF-----------DSN---LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTY 254 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 254 (319)
..++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++... ++..+
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 7788999999999999999987531 122 124456777888999999999999987654 67788
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i 317 (319)
..+...+...|++++|++.+++.+... +.+...+...+..+...|++++|..+++++.+...
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998863 22467777788889999999999999999877543
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=1.4e-15 Score=124.94 Aligned_cols=279 Identities=12% Similarity=0.045 Sum_probs=215.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH--HHHHHHHhcCChhHHH
Q 020976 23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT--TIMKCCFRNRKYKLGL 100 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 100 (319)
.|+++.|.+......+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998888766542222 223333345557899999999999999874 45554333 3356788999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh-------hhHHHHHHHHHhcCCHHHHHHHH
Q 020976 101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-------VSYNTLINLYCKEGKLEAAYLLL 173 (319)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 173 (319)
+.++++.+.. |-++.....+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999886 667888899999999999999999999999987544222 12333344444455566667777
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---C
Q 020976 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D 250 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 250 (319)
+.+.+. .+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+. |
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 666443 2347778889999999999999999999999874 4555322 233444669999999999887655 6
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
+..+..+...+...+++++|.+.|+...+. .|+...+..+..++.+.|+.++|.+++++-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778889999999999999999999999975 789999999999999999999999999875
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.6e-15 Score=117.90 Aligned_cols=307 Identities=16% Similarity=0.219 Sum_probs=198.5
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
.+.+..+|..+|.++++-...++|.+++.+-.....+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|.
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 4567889999999999999999999999998887777889999999877654333 778889988889999999999
Q ss_pred HHHHHHhcCChhH----HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH-HHHHHHHHHhC----CCc----cChhh
Q 020976 86 IMKCCFRNRKYKL----GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE-ATDYMEQMVTD----GVQ----LDIVS 152 (319)
Q Consensus 86 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~~~~ 152 (319)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++... .++ .+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999997655 56778888999999999999999998888887754 44445554432 122 23445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCc---HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHH
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQG----FECD---KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 225 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (319)
|...+..|.+..+.+.|.++..-+.... +.|+ ...|..+....|.....+.....|+.|.-.-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 6666677777777666666654433210 1111 12344444444555555555555555554444455555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC--------------------------------------------------------
Q 020976 226 IVDRLGKDGKIDHAINVFESMEVK-------------------------------------------------------- 249 (319)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------------------- 249 (319)
++++....|.++-..+++..+..-
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 555555455444444444333211
Q ss_pred --CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCc----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR----ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 250 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
.+...+.++..+.+.|+.++|.++|..+.+.+-+ |......-+++.-.+.+....|...++-+...+
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3344555556666777777777777776544322 222233345555566666777776666665444
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=6.7e-15 Score=114.56 Aligned_cols=303 Identities=11% Similarity=0.105 Sum_probs=231.4
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hh-HHHHHHHHHhhC------------
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR--LR-TARWILKELGDS------------ 74 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~-~a~~~~~~~~~~------------ 74 (319)
+.+=|.|+.. ...|.+.++.-+|+.|.+.|++.+...-..|++..+-.+. +- .-++.|-.|...
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3445555554 4578899999999999999988887776666654433221 11 112222222221
Q ss_pred -------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc
Q 020976 75 -------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147 (319)
Q Consensus 75 -------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
-.+.+..++.++|.+.++-...+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 12347789999999999999999999999999887779999999999977554333 7789999999899
Q ss_pred cChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH-HHHHHHHHHh----cCCCC
Q 020976 148 LDIVSYNTLINLYCKEGKLEA----AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG-ARLHLEYMNK----IGFDS 218 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~ 218 (319)
||..|||+++++..+.|+++. |.+++.+|++-|+.|+..+|..+|..+++.++..+ +..++.++.. ..++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56788899999999999999999999999888755 3444444433 22332
Q ss_pred ----ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCc
Q 020976 219 ----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283 (319)
Q Consensus 219 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (319)
+...|...+..|.+..+.+.|.++-.-+... ...-|..+....++....+.-...++.|.-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 3455666777788888988888887655533 2334666777788888889999999999888788
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976 284 ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317 (319)
Q Consensus 284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i 317 (319)
|+..+...++++....|.++-..++|..+...|-
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 8999999999999999999999999999988773
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.2e-15 Score=124.62 Aligned_cols=281 Identities=14% Similarity=0.007 Sum_probs=223.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHH
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLE 101 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
-+.++|+..|..+..+ +.-+......+..+|...+++++|.++|+.+.+... .-+.++|.+.+.-+- + +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHH
Confidence 3578899999996665 333557778899999999999999999999987421 125677777765432 2 22333
Q ss_pred HH-HHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 102 IL-SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 102 ~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
.+ +.+.+.. +..+.+|.++..+|.-.++.+.|++.|++.... .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 33 4444443 667899999999999999999999999999985 34 6788999988899999999999999998865
Q ss_pred CCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHH
Q 020976 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSS 256 (319)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 256 (319)
... +...|.-+...|.+.++++.|+-.|+...+.+ +-+......+...+.+.|+.++|++++++.... |+..--.
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 333 44566778888999999999999999999876 556677788888999999999999999987644 6666666
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
.+..+...+++++|+..++++.+. ++-+...|..+...|.+.|+.+.|+.-|.-+-+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 677888899999999999999875 3335677888889999999999999888766543
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=6.3e-14 Score=122.93 Aligned_cols=292 Identities=14% Similarity=0.077 Sum_probs=165.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
...+...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 44677778888888888888776443 5666667777788888888888888887764 44544453343333334555
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH-----------------------------------------
Q 020976 97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT----------------------------------------- 135 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------------------------------------- 135 (319)
.+|++.++++.+.. +-+...+..+...+.+.|-...|+
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 55777777776653 333333333333333333222222
Q ss_pred -------HHHHHHHhC-C-CccChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976 136 -------DYMEQMVTD-G-VQLDIVSY----NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202 (319)
Q Consensus 136 -------~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
.-++.+... + .++....| .-.+-++...+++.++++.|+.+...+.+....+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 222222211 0 01111111 1223455566667777777777766655444456666667777777777
Q ss_pred HHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc------------------hhHHHHHH
Q 020976 203 GARLHLEYMNKIG-----FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------------------FTYSSMVH 259 (319)
Q Consensus 203 ~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~~l~~ 259 (319)
+|..++..+.... .+++......|..++...+++++|..+++++....+ ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 7777777665432 122333345666666677777777777666654211 11233455
Q ss_pred HHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
.+.-.|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++...
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5666666777777776665542 2266666666666666666666666665543
No 29
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=5.8e-14 Score=105.44 Aligned_cols=287 Identities=14% Similarity=0.097 Sum_probs=222.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcCCh
Q 020976 23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA------ITYTTIMKCCFRNRKY 96 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 96 (319)
.++.++|.++|-+|.+... .+..+.-+|.+.|.+.|..++|+++.+.+.++ ||. ...-.|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 5678999999999998533 25667778999999999999999999999875 443 2344566678889999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh----hhHHHHHHHHHhcCCHHHHHHH
Q 020976 97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI----VSYNTLINLYCKEGKLEAAYLL 172 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
+.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|..+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999865 445667888999999999999999999999887544332 2355666666778899999999
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--C
Q 020976 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--D 250 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~ 250 (319)
+.+..+.+.+ ....--.+.+.....|+++.|.+.++.+.+.+..--..+...+..+|...|+.++....+.++... .
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9999887544 444445677888899999999999999999876556688899999999999999999999987765 4
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhhhc
Q 020976 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR---HSGCRREAKKIQSKIRMAKI 317 (319)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~i 317 (319)
+..-..+...-....-.+.|...+.+-+.. +|+...+..+++.-. ..|...+-+..+++|....+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 444455544444445556777776666554 689999999988653 35557777777777765543
No 30
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.74 E-value=7.8e-14 Score=107.67 Aligned_cols=282 Identities=16% Similarity=0.149 Sum_probs=226.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 020976 23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (319)
.|++.+|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-+++.+..+....++....-...+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999999999988876553 4566667778888999999999999998864455667777778888999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChh-------hHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINLYCKEGKLEAAYLLLDE 175 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
+.++.+.+ +.++........+|.+.|++.....++..+.+.|.-.++. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999886 6678889999999999999999999999999987655543 466666666666666666666666
Q ss_pred HHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc---cCCch
Q 020976 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSF 252 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~ 252 (319)
.... .+-++..-..++.-+.+.|+.++|.++..+..+.+..|+ ... .-.+.+-++.+.-.+..+.-. ..++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 6543 344666777888889999999999999999998876666 222 223456666666665555443 23788
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
.+.++...|.+.+.+.+|.+.|+..++. .|+..+|..+..++.+.|+..+|.+.+++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999999999999988775 7899999999999999999999999887753
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.5e-13 Score=120.70 Aligned_cols=297 Identities=10% Similarity=0.005 Sum_probs=199.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 020976 15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 94 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (319)
.++..+...|+.++|+..+++.... ..........+...+...|++++|.++|+++.+..+. ++..+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC
Confidence 6666777777777777777777621 1122333333455777778888888888888776433 4566667777777888
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976 95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (319)
+.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. |.+...+..+..++.+.|-...|.++..
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 888888888887765 4444444344334434555556888888887763 3345555555555555554443333332
Q ss_pred ------------------------------------------------HHHH-cCCCCcHH-----hHHHHHHHHhccCC
Q 020976 175 ------------------------------------------------EMEK-QGFECDKY-----THTILIDGLCKAGN 200 (319)
Q Consensus 175 ------------------------------------------------~~~~-~~~~~~~~-----~~~~l~~~~~~~~~ 200 (319)
.+.. .+..|... ...-.+-++...++
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 2221 11123211 11233456677889
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC---------chhHHHHHHHHHccCChhHHH
Q 020976 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---------SFTYSSMVHNLCKAKRLPSAS 271 (319)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~ 271 (319)
+.++++.++.+...+.+....+-..+.++|...+++++|..+++.+...+ ......|.-+|..++++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 99999999999988766555688899999999999999999999985432 222467899999999999999
Q ss_pred HHHHHHHHcCC-----------ccCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 272 KLLLSCLKSGV-----------RILK---SAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 272 ~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
.+++++.+... .||+ ..+..++..+.-.|+..+|++.++++....
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA 446 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987422 1222 234456677889999999999999986653
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=3.7e-14 Score=126.85 Aligned_cols=258 Identities=10% Similarity=-0.026 Sum_probs=124.7
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...|..+..++.. ++.++|+..|.+.... .|+......+...+...|++++|...|+++... +|+...+..+..+
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence 3444444444444 4555555555554443 233333223333334555666666655555432 2333334444455
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976 90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+.+.|++++|.+.+++..+.. +.+...+..+.....+.|++++|...+++..+. .|+...+..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 555556666666655555442 212212222222223335666666666555553 23445555555555566666666
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (319)
...+++.....+. +...+..+..++...|++++|...++...+.. +-+...+..+..++...|++++|...+++....
T Consensus 629 ~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666555554322 33444555555555566666666555555542 334455555555555566666666655555433
Q ss_pred Cc---hhHHHHHHHHHccCChhHHHHHHHHH
Q 020976 250 DS---FTYSSMVHNLCKAKRLPSASKLLLSC 277 (319)
Q Consensus 250 ~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (319)
++ .+............+++.+.+-+.+.
T Consensus 707 ~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 707 IDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 22 22233333344444444444444443
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=7.8e-14 Score=124.78 Aligned_cols=259 Identities=11% Similarity=0.006 Sum_probs=197.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
+...|..+..++.. +++++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56777878877776 7888899988887764 355444434455556889999999999987655 455555667777
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
.+.+.|+.++|...+++..... +.....+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 8888999999999999988764 223333334444455669999999999999876 4567788888899999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
|...+++..+.. +.+...+..+..++...|++++|+..+++.... ++..+..+..++...|++++|+..+++..+.
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999998875 556677888888899999999999999987644 6778889999999999999999999999876
Q ss_pred CCccC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 281 GVRIL-KSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 281 ~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
. |+ ..+.........+..+++.|.+-+++.-
T Consensus 707 ~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 707 I--DNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred C--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3 43 3455555666667777777777666543
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=9.1e-14 Score=114.30 Aligned_cols=257 Identities=11% Similarity=0.039 Sum_probs=200.4
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYN--ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+..+. ++..+..+...|.+
T Consensus 123 laA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~ 199 (398)
T PRK10747 123 LAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 3344558899999999999999875 34543332 3467888999999999999999987643 68889999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976 93 NRKYKLGLEILSAMKRKGYTFDG-------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+... .+.++.....+...+...|+
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence 99999999999999988643222 12333344444455566677777776544 34577888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.. +-|......+...+.+.+++++|.+.|+.
T Consensus 279 ~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 279 HDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999874 4454322 3334446699999999999988764 55667788999999999999999999999
Q ss_pred hccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 246 MEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 246 ~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
.... +...+..+...+.+.|+.++|..++++.+..
T Consensus 354 al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 354 ALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8754 6667788999999999999999999987653
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.5e-13 Score=107.99 Aligned_cols=287 Identities=11% Similarity=0.074 Sum_probs=217.6
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCC
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 95 (319)
.++......+++..=.+.....|.+-+...-+....+.-...|+++|+.+|+++.+..+- -|..+|..++- ++..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence 345555677778877788888887655555555555666788999999999999886321 15567766653 33322
Q ss_pred hhHHHHHHHH-HHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976 96 YKLGLEILSA-MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174 (319)
Q Consensus 96 ~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (319)
- .+.++.+ ....+ +-.+.|+..+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|.+-++
T Consensus 313 s--kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H--HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 2222222 22222 4456788888999999999999999999999874 3356789999999999999999999999
Q ss_pred HHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---Cc
Q 020976 175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DS 251 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 251 (319)
...+-.+. |...|-.+.++|.-.+.+.-|.-.|++..+.. |.|...|.+|..+|.+.++.++|+..|.+...- +.
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 99987655 88899999999999999999999999998874 667899999999999999999999999987654 45
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHc----CC-cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKS----GV-RI-LKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
..+..+...|-+.++.++|...+.+.++. |. .| ......-|..-+.+.+++++|-.+..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 78999999999999999999999887763 32 22 2223333556677788888876655443
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.7e-13 Score=113.29 Aligned_cols=270 Identities=12% Similarity=-0.001 Sum_probs=195.2
Q ss_pred CcchHh-HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976 7 TPCTAT-FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85 (319)
Q Consensus 7 ~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
.|+... +-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|.+.++.+.+..+. +...+..
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~l 192 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKL 192 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 454333 34446678888999999999999877533333334444578888999999999999999987543 6788899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHH-HHHHHH---HHcCchHHHHHHHHHHHhCCC---ccChhhHHHHHH
Q 020976 86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC-TVIAAF---VKIGRLKEATDYMEQMVTDGV---QLDIVSYNTLIN 158 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~ 158 (319)
+...+...|++++|.+.+..+.+.+.. +...+. .-...+ ...+..+.....+..+..... +.+...+..+..
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 999999999999999999999988743 333332 111111 222333333345555544321 237788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhH-HHHHHHHhccCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCC
Q 020976 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTH-TILIDGLCKAGNIKGARLHLEYMNKIGFDSNL--EAYNCIVDRLGKDGK 235 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~ 235 (319)
.+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+.. +-+. ....++...+.+.|+
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGE 350 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHccc
Confidence 999999999999999999986443221111 111222234578888888888887753 3444 566788999999999
Q ss_pred HHHHHHHHHh--hc--cCCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 236 IDHAINVFES--ME--VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 236 ~~~a~~~~~~--~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
+++|.+.|+. .. .+++..+..+...+.+.|+.++|.+++++.+.
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999993 42 45777888999999999999999999998654
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=2.5e-12 Score=108.96 Aligned_cols=304 Identities=13% Similarity=0.078 Sum_probs=197.6
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
+.|.....-.....+.-.|++++|.+++.+..+.... +...|.+|...|-..|+.+++...+-....... -|...|..
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ 212 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKR 212 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHH
Confidence 4444555555555566669999999999999887444 788899999999999999999887766655433 36788888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhH----HHHHHHHH
Q 020976 86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY----NTLINLYC 161 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~ 161 (319)
+.....+.|+++.|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..-+ ..+++.+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 8888888888999998898888775 555555555566777788888888888777765321121111 11233333
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHhccCC----------------------------------------
Q 020976 162 KEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGN---------------------------------------- 200 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---------------------------------------- 200 (319)
..++.+.|.+.+......+ -..+...++.++..+.+...
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 4444444544444433210 01122223333333333333
Q ss_pred ---------------------hhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----Cchh
Q 020976 201 ---------------------IKGARLHLEYMNKIGF--DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT 253 (319)
Q Consensus 201 ---------------------~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 253 (319)
.+....+...+.+.++ .-+...|.-+..+|...|++.+|+.+|..+... +...
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 3333333333343332 223455667778888888888888888877754 6667
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
|..+..+|...|.+++|.+.+.+.+.... -+...-..|...+.+.|+.++|.+.+..+.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 88888888888888888888888876522 244556667777788888888888877654
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.64 E-value=1.2e-12 Score=112.40 Aligned_cols=266 Identities=11% Similarity=-0.004 Sum_probs=178.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 020976 42 VPELVTYNILIKGLCK-----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR---------NRKYKLGLEILSAMK 107 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 107 (319)
..+...|...+.+... .+++++|.+.|++..+..+. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3466666555555322 23467888899988875322 45556655554432 234788999999888
Q ss_pred hCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 020976 108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187 (319)
Q Consensus 108 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (319)
+.+ +-+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+..+. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 5567778888888888899999999999988864 345667788888899999999999999998887544 2223
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc---hhHHHHHHHHHcc
Q 020976 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKA 264 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~ 264 (319)
+..++..+...|++++|...++++.+...+.+...+..+..++...|+.++|...+.++....+ ...+.+...|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3334445666788999999998887654222445567777888889999999999988765533 3445555566666
Q ss_pred CChhHHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 265 KRLPSASKLLLSCLKS-GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 265 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
| +.|...++++.+. ...+....+ .-..+.-.|+.+.+..+ +++.+.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6 4777777776653 122222223 33344456777776666 6666553
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.7e-13 Score=111.15 Aligned_cols=267 Identities=11% Similarity=0.027 Sum_probs=211.2
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHH-HHHHhhCCCCCChhhHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTARWI-LKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~ 87 (319)
.....+..+|...+++++|.++|+.+.+... .-+..+|.+.+.-+-+ +-++.. -+.+.+. .+-.+.+|..+.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence 4556778899999999999999999987531 1367888888765532 122222 2333333 233689999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+....++|.|...|+...... +-+-.+|.-+.-.|.+.++++
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhh
Confidence 99999999999999999999875 4478889999999999999999999999987641 123344455677899999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
.|+-.|++..+-++. +......+...+.+.|+.++|++++++....+ +.|+..--..+..+...+++++|+..++++.
T Consensus 507 ~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 507 FAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 999999999886555 66677778888899999999999999998876 4455555556677888999999999999887
Q ss_pred cC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH
Q 020976 248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286 (319)
Q Consensus 248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (319)
.. +...|..+...|.+.|+.+.|+.-|-.+.+...+++.
T Consensus 585 ~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 585 ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 54 6778999999999999999999999999887555443
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.63 E-value=1.7e-12 Score=111.37 Aligned_cols=264 Identities=11% Similarity=0.021 Sum_probs=156.8
Q ss_pred chHhHHHHHHHHhh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHhhC
Q 020976 9 CTATFNIMLNGLCK-----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA---------GRLRTARWILKELGDS 74 (319)
Q Consensus 9 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~ 74 (319)
+...|...+.+... .+++++|++.|++..+..+. +...|..+..++... +++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34455555555322 13456777788777765332 445565555554422 3367788888877775
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHH
Q 020976 75 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154 (319)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (319)
.+. +..++..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 433 56677777777777788888888888877764 445666777777777888888888888887775322 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 020976 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 234 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (319)
.++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH
Confidence 3444556677788888887777654322234445666667777888888888877765432 222333444555556666
Q ss_pred CHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 235 KIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
+.|...++.+... .......+...+.-.|+.+.+..+ +++.+.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3666656554432 111111133344445565555544 666554
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=7.4e-12 Score=106.16 Aligned_cols=270 Identities=13% Similarity=0.053 Sum_probs=187.5
Q ss_pred CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+.+...|..|...|-+.|+.+++...+-..-..+. -|...|..+.....+.|++++|.-.|.+..+.. +++...+-.-
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~er 247 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYER 247 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHH
Confidence 34566788888888888888888777655544433 366778888888888888888888888887754 2355555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHH----HHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHH
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC----TVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYC 161 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 161 (319)
...|-+.|+...|...|.++.+..-+.|..-+. ..++.+...++.+.|.+.++..... +-..+...++.++..+.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 667777888888888888777664211222122 2344455556667777777766552 22234445666666666
Q ss_pred hcCCHHHHHHHHHHHHH-------------------------------------------------------------cC
Q 020976 162 KEGKLEAAYLLLDEMEK-------------------------------------------------------------QG 180 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~-------------------------------------------------------------~~ 180 (319)
+..+++.+......+.. ..
T Consensus 328 ~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n 407 (895)
T KOG2076|consen 328 KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN 407 (895)
T ss_pred HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc
Confidence 66666666555544433 12
Q ss_pred C--CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc---hhHH
Q 020976 181 F--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYS 255 (319)
Q Consensus 181 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~ 255 (319)
. .-+...|.-+..++...|++.+|..++..+......-+...|-.+..+|...|..++|.+.++.+....| ..--
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 1 1133457778889999999999999999999875445567899999999999999999999999876644 4455
Q ss_pred HHHHHHHccCChhHHHHHHHHHH
Q 020976 256 SMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
.|...+.+.|+.++|.+.+..+.
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhccc
Confidence 66777889999999999998875
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=1.7e-12 Score=99.55 Aligned_cols=200 Identities=14% Similarity=0.066 Sum_probs=139.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45666777777777888888888887776643 2245666777777777788888888887777654 445556667777
Q ss_pred HHHHcCchHHHHHHHHHHHhCCC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
.+...|++++|...+++...... +.....+..+..++...|++++|...+.+..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 77777888888888877776421 223345666677777888888888888877765332 4556667777777888888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
+|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888877765 24455666666777777788888877766543
No 43
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=1.3e-13 Score=103.88 Aligned_cols=227 Identities=12% Similarity=0.011 Sum_probs=194.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 020976 83 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (319)
-+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-..|.+..++..|+.++.+-.+. .+.++....-+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467889999999999999999988877 677889999999999999999999999998886 45566656678888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 020976 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (319)
.++.++|.++|+...+.... ++.....+...|.-.++++-|..+++++.+.|+ -+++.|..+.-+|...++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999886433 666777777788889999999999999999995 6778999999999999999999999
Q ss_pred HHhhccC------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 243 FESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 243 ~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
|++.... ...+|-.+....+..|++..|.+.|+-.+..+.. +...++.+...-.+.|+.++|+.+++..+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9876533 4567888888889999999999999999887443 6678888888889999999999999877654
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1.9e-11 Score=94.70 Aligned_cols=268 Identities=10% Similarity=0.015 Sum_probs=216.3
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
..|..-..+.-+.|+.+.+-.++.+.-+.--.++...+-+..+.....|+.+.|..-++++.+.+.. ++.......++|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHH
Confidence 4466667778889999999999999988644567778888888999999999999999999987644 788899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976 91 FRNRKYKLGLEILSAMKRKGYTFDG-------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
.+.|++.....++.++.+.+.-.+. .+|..+++-....+..+.-...++..... .+.++..-..++.-+.+.
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc
Confidence 9999999999999999998855443 45677777666667777767777777665 445666777888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (319)
|+.++|.++..+..+.+..|. ... .-.+.+.++.+.-.+..+.-.+. .+.++..+..+...|.+.+.+.+|...|
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred CChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999877766 222 22445778888877777776654 2455588899999999999999999999
Q ss_pred HhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccC
Q 020976 244 ESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 285 (319)
Q Consensus 244 ~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (319)
+...+. +...|+.+..++.+.|+..+|.++.++.+..-.+|+
T Consensus 352 eaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 352 EAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 977644 888999999999999999999999998775544443
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.60 E-value=2.7e-12 Score=98.40 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 020976 81 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444444444455555555444444332 2233344444444444455555555544444431 12233344444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 020976 161 CKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (319)
...|++++|.+.+.+.......+ ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 44455555555544444321111 12233334444444445555554444444432 22233444444444444555554
Q ss_pred HHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHH
Q 020976 240 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC 277 (319)
Q Consensus 240 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (319)
...+++.... ++..+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444443221 2333333444444444444444444443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.8e-11 Score=95.59 Aligned_cols=248 Identities=15% Similarity=0.086 Sum_probs=175.4
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CcccHHHHHHHHHHcCchHHHH
Q 020976 59 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF---DGFGYCTVIAAFVKIGRLKEAT 135 (319)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~ 135 (319)
.+.+++..-.+.+...|.+-+...-+....+.....|+++|+.+|+++.+.. |- |..+|..++-. +..+- .+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv--~~~~s--kL 315 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV--KNDKS--KL 315 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH--HhhhH--HH
Confidence 3444444444555555554333333333334445556666666666666552 21 23333333321 11111 11
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215 (319)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
.++-+-...--+--+.|...+..-|.-.++.++|...|+...+.++. ....|+.+..-|....+...|...++..++.+
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11111111101123345566677777888999999999999987654 56678888888999999999999999999976
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292 (319)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (319)
|.|...|-.+.++|.-.+.+.-|+-.|++...- |+..|.+|..+|.+.++.++|++.|++....|-. +...+..+
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L 472 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL 472 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence 678899999999999999999999999987643 9999999999999999999999999999987654 66889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 020976 293 VDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 293 ~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
.+.|-+.++.++|...+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999887544
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=5.2e-11 Score=97.99 Aligned_cols=299 Identities=13% Similarity=0.041 Sum_probs=191.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
|......--..|..+....+|++.... .+-....|-.....+...|+...|..++....+.... +...|-.-++.-..
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~e 630 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhc
Confidence 333333333345555555555555544 2223444555555555666666676666666665333 55666666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976 93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
..+++.|..+|.+.... .|+...|.--+..-.-.+..++|++++++..+. ++.-...|..+.+.+.+.++.+.|.+.
T Consensus 631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66777777777666554 455555555555555556677777777766664 332334556666666677777777766
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---
Q 020976 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 249 (319)
|..-.+. ++.....|..+...--+.|.+-.|..++++..-.+ +.+...|...|++-.+.|+.+.|..+..+....
T Consensus 708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 6655443 22244556666666667777888888888777665 566777888888888888888777666544211
Q ss_pred ------------------------------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 020976 250 ------------------------------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299 (319)
Q Consensus 250 ------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (319)
|+.+.-.+...|-...++++|.+.|.+.++.+.. +..+|..+..-+.+.
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRH 864 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHh
Confidence 6666777777777778888888888888876432 557788888888888
Q ss_pred CCHHHHHHHHHHHHhhhccC
Q 020976 300 GCRREAKKIQSKIRMAKISH 319 (319)
Q Consensus 300 g~~~~a~~~~~~~~~~~i~h 319 (319)
|.-+.-.+++.+.......|
T Consensus 865 G~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 865 GTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred CCHHHHHHHHHHHhccCCCC
Confidence 88888888888877766655
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=3.7e-12 Score=100.48 Aligned_cols=278 Identities=15% Similarity=0.061 Sum_probs=203.3
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 19 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK--AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
-+.++|+++.|++++..+.+..-+.....-+.|-..+.- -+++..|.+.-+...... .-++.....-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 477889999999999888765433333333333322222 346777877777665432 12333333333444567899
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
++|.+.|.+.....-.-....|+ +...+-..|++++|+.+|-++... +..+..+...+...|....+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999988664222222232 333567789999999999887654 2346777888889999999999999999887
Q ss_pred HHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh--ccCCchhH
Q 020976 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--EVKDSFTY 254 (319)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~ 254 (319)
... ++-|+...+.+...|-+.|+-.+|.+.+-.--+. ++-+.++...|...|....-+++++..|++. ..|+..-|
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 654 4457888999999999999999998876554433 5778899999999999999999999999975 46788889
Q ss_pred HHHHHHH-HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCH
Q 020976 255 SSMVHNL-CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302 (319)
Q Consensus 255 ~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (319)
..++..| .+.|++.+|.++++...+. ++.|......+++.+...|..
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 8887654 5689999999999998765 666888888899888877753
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=7.6e-12 Score=94.31 Aligned_cols=256 Identities=13% Similarity=0.087 Sum_probs=193.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc------cHHH
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF------GYCT 120 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 120 (319)
.|-.=++.+ -.++.++|.++|-+|.+... -+..+--+|.+.|-+.|..+.|+.+.+.+.++ ||.. ..-.
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 343333333 35789999999999998532 25666678889999999999999999998865 3332 2334
Q ss_pred HHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHh
Q 020976 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK----YTHTILIDGLC 196 (319)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 196 (319)
|..-|...|-++.|+.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+.. ..|.-+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 5566888999999999999998864 235667888999999999999999999999887665443 35666777777
Q ss_pred ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc----hhHHHHHHHHHccCChhHHHH
Q 020976 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASK 272 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 272 (319)
...+++.|..++.+..+.+ +.....-..+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7789999999999998875 45566667788889999999999999999988765 466778889999999999999
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
.+.++.+... ....-..+.+......-.+.|..++.+
T Consensus 271 fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 271 FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHH
Confidence 9999987643 333334444433334444555544433
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=6.5e-12 Score=107.31 Aligned_cols=304 Identities=14% Similarity=0.052 Sum_probs=211.1
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCh-
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGL----QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS---GHAPNA- 80 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~- 80 (319)
|...|-.+...+... +...++..|... ...+..+.+...|.+...+...|++++|...|...... ...++.
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 455565555555443 333446666543 33444466778888888888888888888888877654 112222
Q ss_pred -----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976 81 -----ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155 (319)
Q Consensus 81 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
.+--.+.++.-..++++.|.+.|..+.+.. +--...|..++-.....+...+|...+....... ..++..++.
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 223344555666678888888888887662 2223334444433334567778888888877652 345566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHhcc------------CChhHHHHHHHHHHhcCCCCChhh
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKA------------GNIKGARLHLEYMNKIGFDSNLEA 222 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~ 222 (319)
+...+.+...+..|.+-|..+.+.- ..+|..+.-.|...|... +..++|.++|..+++.. +.|...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhh
Confidence 7778888888888888777665432 234666655555544322 34678888888888765 667777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc-CCccCHHHHHHHHHHHHh
Q 020976 223 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKAVVDGLRH 298 (319)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 298 (319)
-+-+.-+++..|++..|..+|.++.+. ...+|-.+.++|...|++..|+++|+...+. ....+......|.+++.+
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 788888899999999999999988865 5688999999999999999999999987765 445577888999999999
Q ss_pred cCCHHHHHHHHHHHHhhh
Q 020976 299 SGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~ 316 (319)
.|.+.+|.+.+.......
T Consensus 729 ~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 999999998887765543
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=3.1e-12 Score=109.22 Aligned_cols=309 Identities=14% Similarity=0.061 Sum_probs=231.4
Q ss_pred CCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhC---CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976 3 CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---GFVPE------LVTYNILIKGLCKAGRLRTARWILKELGD 73 (319)
Q Consensus 3 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
+.+-.+-++..|.+...+...|++..|...|...... ...++ +.+--.+....-..++++.|.+.|..+..
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3445577889999999999999999999999988664 12222 22334456666677899999999999988
Q ss_pred CCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC-CccChh
Q 020976 74 SGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIV 151 (319)
Q Consensus 74 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 151 (319)
. .|. +..|..++-.....+...+|...+....... ..++..+..+...+.+...+..|.+-|+.+.+.- ..+|+.
T Consensus 525 e--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 525 E--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred H--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 5 344 3445555433334577889999999888765 6677788888889999999999999888776641 235666
Q ss_pred hHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 020976 152 SYNTLINLYCK------------EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219 (319)
Q Consensus 152 ~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (319)
+.-.|...|.+ .+..++|+++|.+.++..+. +...-+-+...++..|++..|..+|..+.+.. .-.
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~ 679 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDF 679 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhC
Confidence 66666665542 34577899999999987655 77777888888999999999999999999874 345
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294 (319)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (319)
..+|..+.++|...|++..|+++|+..... ++.+.+.|..++.+.|.+.+|.+.+...+...+......|+..+.
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 578899999999999999999999976543 788999999999999999999999988877644434445554433
Q ss_pred HH------------------HhcCCHHHHHHHHHHHHhhh
Q 020976 295 GL------------------RHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 295 ~~------------------~~~g~~~~a~~~~~~~~~~~ 316 (319)
.. ...+..+.|.++|.+|...+
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 21 11344566777777776543
No 52
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.57 E-value=5.7e-11 Score=99.14 Aligned_cols=291 Identities=18% Similarity=0.132 Sum_probs=208.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc--
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN-- 93 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 93 (319)
....+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+.+.++. |..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 446678899999999999886554 4445667788889999999999999999999998533 455555555555222
Q ss_pred ---CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCch-HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976 94 ---RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL-KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169 (319)
Q Consensus 94 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
.+.+...++|+++...- |.......+.-.+.....+ ..+...+..+...|+| .+|+.+-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 25677788898887663 4433333333222222223 3455666777777765 3567777777666555556
Q ss_pred HHHHHHHHHc----C----------CCCcH--HhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 020976 170 YLLLDEMEKQ----G----------FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233 (319)
Q Consensus 170 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (319)
.+++...... + -.|+. .++..+...|...|++++|..+++..++.. |..+..|..-...+-..
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 6666665432 1 12333 345666788889999999999999999874 33468888889999999
Q ss_pred CCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHH--------HHHHHHHHHHhcCCH
Q 020976 234 GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS--------AQKAVVDGLRHSGCR 302 (319)
Q Consensus 234 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~ 302 (319)
|++.+|.+.++..... |-..-+..+..+.+.|++++|.+++....+.+..|-.. .......+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999988866 55666777888899999999999999988776544221 224566789999999
Q ss_pred HHHHHHHHHHHh
Q 020976 303 REAKKIQSKIRM 314 (319)
Q Consensus 303 ~~a~~~~~~~~~ 314 (319)
..|++-|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.4e-11 Score=95.72 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=142.8
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (319)
|.-+...|....+.++..+.|....+.+ +-++.+|..-.+...-.+++++|..=|++.+...+. +...|..+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHH
Confidence 5556666777777888888888877763 346667777777777788888888888888775433 45566666666678
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------Cch--hHHHHHHHHHccCC
Q 020976 198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSF--TYSSMVHNLCKAKR 266 (319)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~--~~~~l~~~~~~~~~ 266 (319)
.+.++++...|++..+. +|..++.|+.....+...++++.|.+.|+..... ++. +.-.++. +--.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhh
Confidence 88999999999998875 6777889999999999999999999999876643 111 1112221 123478
Q ss_pred hhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
+..|..++.+..+...+ ....|..|...-...|+.++|+++|++-
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999998876544 4567889999999999999999999874
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=2e-14 Score=80.64 Aligned_cols=50 Identities=44% Similarity=0.901 Sum_probs=38.8
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 57 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (319)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777754
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1.8e-11 Score=96.66 Aligned_cols=183 Identities=11% Similarity=0.055 Sum_probs=144.7
Q ss_pred cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHH
Q 020976 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (319)
.|++++|...+++.....-......|| +.-.+...|+.++|++.|-++..- +.-+......+...|....+..+|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 478899999999888753222222233 334567789999999999877543 223666777888889888999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc---cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284 (319)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (319)
+.+.... ++.|+.++..|...|-+.|+-..|.++.-.-- ..+..+...|...|....-+++++.+|++..- +.|
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 8877654 56778899999999999999999998876433 23888888899999999999999999998753 689
Q ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhh
Q 020976 285 LKSAQKAVVDGL-RHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 285 ~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 315 (319)
+..-|..++..| .+.|++++|.++++.+.++
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999999888755 6799999999999988764
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=7.5e-13 Score=111.85 Aligned_cols=264 Identities=14% Similarity=0.158 Sum_probs=143.7
Q ss_pred CCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976 2 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81 (319)
Q Consensus 2 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 34567777777777777777777777766 7777666656666667777777766666665554 46667
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHH
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLY 160 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 160 (319)
+|..|..+|...||... .+..++ ....+...+...|.-.....++..+.-. +.-||. ...+...
T Consensus 85 tyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illl 149 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLL 149 (1088)
T ss_pred HHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHH
Confidence 77777777777776544 111111 1111222222233222222222222111 111222 2233333
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 020976 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (319)
.-.|-++.+.+++..+....... ++..+++.+.... .+++...+.....+ .|+..+|..++.+....|+.+.|
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence 44455555555554443221111 1111233333222 22333333333322 46777777777777777777777
Q ss_pred HHHHHhhccC----CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCC
Q 020976 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301 (319)
Q Consensus 240 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (319)
..++.+|.+. ++.-|..++-+ .++...+..+++-|...|+.|+..|+...+..+.+.|.
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777777765 44445555544 66666777777777777777777777777666666444
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=4.4e-12 Score=95.81 Aligned_cols=227 Identities=11% Similarity=0.020 Sum_probs=173.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 020976 49 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128 (319)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (319)
+.+..+|.+.|-+.+|.+.|+.-... .|-+.||..|-++|.+..++..|+.++.+-.+. ++.+.....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 66778888888888888888877764 567778888888888888888888888877765 244554455566777778
Q ss_pred CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHH
Q 020976 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (319)
++.++|.++++...+. -+.++.....+...|.-.++++-|+.+|+.+.+.|+. ++..|..+.-+|...++++-+...|
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888887775 2345666666777788888888888888888888877 7778888888888888888888888
Q ss_pred HHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 209 EYMNKIGFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 209 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
.+....--.|+ ..+|-.+.......|++..|.+.|+-.... +...++.+.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88776533333 356777777778888888888888876655 4567888877778888888888888877654
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=7e-10 Score=91.57 Aligned_cols=304 Identities=11% Similarity=-0.047 Sum_probs=216.3
Q ss_pred CCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976 4 GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP--ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81 (319)
Q Consensus 4 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
+|+..+...|-.=...|-..|..-.+..+......-|+.- --.||..-...|.+.+.++-|..+|....+.- +-+..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhH
Confidence 4444555555555555555555555555555555444431 13456666666667777777777777776642 22555
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
.|......--..|..++...++++....- +-....|......+-..|+...|..++....+.. +.+...|-+.+....
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhh
Confidence 66666665556677777778888877663 4445555556666777899999999998888863 336777888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 020976 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN 241 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (319)
.+.+++.|..+|.+.... .|+...|..-+..-...+..++|.+++++..+. ++.-...|..+.+.+.+.++++.|.+
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 889999999999887764 566667766666666778899999999888875 34445677888888888999999988
Q ss_pred HHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 242 VFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 242 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
.|..-... .+..|-.+...--+.|.+-.|..++++.+-.+.. +...|...|+.-.+.|+.+.|..+..+..+
T Consensus 707 aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88765544 5567777777777788899999999998877554 778899999999999999999887766543
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.2e-10 Score=94.21 Aligned_cols=286 Identities=13% Similarity=-0.019 Sum_probs=203.1
Q ss_pred CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976 5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84 (319)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
|+.-++.....-.+-+...+++.+..++++.+.+. .++....+..-|..+...|+..+-..+=.++.+.. +-.+.+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 34445556666667777788888888888888775 34566677667777888888877777777777653 33677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
.+.--|.-.|...+|.+.|.+....+ +.-...|....+.|.-.|..++|...+....+. ++-..-.+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 88777777788888888888877654 223456778888888888888888888777664 1111122233444567788
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc----C--CCCChhhHHHHHHHHHhcCCHHH
Q 020976 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----G--FDSNLEAYNCIVDRLGKDGKIDH 238 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~ 238 (319)
+.+.|.+.|.+.....+ .|+...+-+.-.....+.+.+|..+|+..... + ......+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 88888888888776532 25666676666666778888888888776622 1 11134567888888888888888
Q ss_pred HHHHHHhhcc---CCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 020976 239 AINVFESMEV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297 (319)
Q Consensus 239 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (319)
|+..+++... .+..++.++.-.|...|+++.|.+.|.+.+. +.|+..+...++..+.
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 8888887653 3778888888888888888888888888764 5777766666665443
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.48 E-value=1.5e-13 Score=77.08 Aligned_cols=50 Identities=38% Similarity=0.744 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887753
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.5e-10 Score=91.58 Aligned_cols=265 Identities=13% Similarity=0.014 Sum_probs=214.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (319)
-++.....-..-+...+++.+..++++.+.+. .+++...+..-|.++...|+..+-..+=.++.+.- |..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 35556666677777889999999999999886 35677788888889999999888888878888774 77788999999
Q ss_pred HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
--|.-.|..++|.+.|.+...... .=...|-.+...|.-.|..++|+..+...-+.= +-....+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 999999999999999999876522 124568888999999999999999998877641 112223334555678899999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----------CchhHHHHHHHHHccCChhHHHH
Q 020976 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASK 272 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~ 272 (319)
.|.++|.+..... |.|+...+.+.-.....+.+.+|..+|+....+ -..+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999988763 567778888877777889999999999876633 22357888999999999999999
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
.+++.+... +-+..++.++.-.|...|+++.|.+.|.+..
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999874 3488999999999999999999999998754
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.47 E-value=7.7e-11 Score=97.34 Aligned_cols=236 Identities=16% Similarity=0.134 Sum_probs=176.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCcc-cHHHHHHHHHHcCchHHHHHHHHHHHhC-----CC-
Q 020976 80 AITYTTIMKCCFRNRKYKLGLEILSAMKRK-----GY-TFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV- 146 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~- 146 (319)
..+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667889999999999999999887654 21 22222 2334667888899999999999988753 21
Q ss_pred -ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CC-CCcH-HhHHHHHHHHhccCChhHHHHHHHHHHhc---C
Q 020976 147 -QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK---Q--GF-ECDK-YTHTILIDGLCKAGNIKGARLHLEYMNKI---G 215 (319)
Q Consensus 147 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 215 (319)
+.-..+++.|..+|.+.|++++|...++...+ . +. .|.. ..++.+...|+..+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12245678888899999999999888877643 1 11 2222 24667777888999999999998876543 1
Q ss_pred CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----------CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 216 FDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 216 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
+.++ ..+++.+...|...|++++|.++++++... ....++.+...|.+.+++++|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 367899999999999999999999987643 2456788899999999999999988876532
Q ss_pred ----CC--ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 281 ----GV--RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 281 ----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
|. +-...+|..|...|...|+++.|.++.+.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 22 223478999999999999999999999887654
No 63
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=7.5e-11 Score=93.83 Aligned_cols=220 Identities=15% Similarity=0.115 Sum_probs=114.9
Q ss_pred HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 020976 20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (319)
+.-.|+.-.|..-|+..+.....++ ..|-.+..+|....+.++....|++..+.+.. |+.+|..-.+...-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 3334555666666666655433322 22555555566666666666666666554333 455555555555555666666
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
..=|++.+... +-+...|..+.-+..+.+.++++...|++.... +|..+..|+.....+...++++.|.+.|+...+.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 66666665543 333444444444445556666666666666555 4445556666666666666666666666665543
Q ss_pred CCC-----CcH--HhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 180 GFE-----CDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 180 ~~~-----~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
... .+. .....++. +.-.+++..|..+++...+.+ +.....+..|...-.+.|+.++|+++|++
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111 011 11111111 112255556666666555543 23334555555555566666666666654
No 64
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=3.3e-10 Score=84.91 Aligned_cols=298 Identities=12% Similarity=0.062 Sum_probs=191.1
Q ss_pred CCCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh
Q 020976 1 MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80 (319)
Q Consensus 1 M~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (319)
|.-.|+..-..-+.+.+..+.+..++.+|++++..-.++..+ +......+..+|....++..|-..++++... .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 444566665666888999999999999999999988887443 7788889999999999999999999999874 4555
Q ss_pred hhHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH--HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHH
Q 020976 81 ITYTTI-MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA--AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157 (319)
Q Consensus 81 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (319)
.-|... ...+.+.+.+..|+.+...|.+. ++...-..-+. .....+|+..+..++++....| +..+.+...
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g 151 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence 555432 45566778888898888877643 11111111111 2234567777777777665432 333444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-------------Chh---
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-------------NLE--- 221 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--- 221 (319)
....+.|+++.|.+-|+...+.+---+...|+..+..| +.++++.|.+...++++.|++. |..
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 55567788888888887777654333455666555444 5577777877777777665431 111
Q ss_pred ------------hHHHHHHHHHhcCCHHHHHHHHHhhccC-----CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976 222 ------------AYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284 (319)
Q Consensus 222 ------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (319)
.++.-...+.+.|+++.|.+.+..|+.+ ||.+...+.-.- ..+++.+..+-++-++..+. -
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-C
Confidence 1122222334677888888888777754 666665554322 23445555555555555433 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976 285 LKSAQKAVVDGLRHSGCRREAKKIQS 310 (319)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 310 (319)
...||..++-.||+..-++-|..++.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 45677777777777777777766653
No 65
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2.6e-09 Score=85.10 Aligned_cols=304 Identities=12% Similarity=0.087 Sum_probs=214.5
Q ss_pred CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CC-CCChhh
Q 020976 5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-GH-APNAIT 82 (319)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~ 82 (319)
...|+..+|++.+..-.+.+.++.|..+|++..- +.|++.+|-.....=.++|+...+.++|+...+. |- ..+...
T Consensus 169 ~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l 246 (677)
T KOG1915|consen 169 EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL 246 (677)
T ss_pred cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3578899999999999999999999999988765 3588888888888778888888888888776652 10 001122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH--------------------------------------------hCCCCCCcccH
Q 020976 83 YTTIMKCCFRNRKYKLGLEILSAMK--------------------------------------------RKGYTFDGFGY 118 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------------------------~~~~~~~~~~~ 118 (319)
+.+....-.++..++.|.-+|.-.. +.+ +.|-.+|
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsW 325 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHH
Confidence 2222222222333333333333221 111 4455666
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHhCCCccChh-------hHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 020976 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINL---YCKEGKLEAAYLLLDEMEKQGFECDKYTH 188 (319)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (319)
-..+..-...|+.+...++|++.+.. ++|-.. .|--+=-+ -....+.+.+.++|+..++. ++...+||
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 66777777789999999999998876 555321 11111111 23467889999999998874 45566677
Q ss_pred HHHHHHH----hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHH
Q 020976 189 TILIDGL----CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 261 (319)
Q Consensus 189 ~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 261 (319)
..+--.| .++.+...|.+++...+ |..|...+|...|..-.+.++++.+..++++...- +-.+|......-
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 6655544 46678899999998776 45788899999999999999999999999998765 555777777777
Q ss_pred HccCChhHHHHHHHHHHHcCC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 262 CKAKRLPSASKLLLSCLKSGV-RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
...|+.+.|..+|.-.+.... ......|.+.|+--...|.++.|+.+++++...
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 788999999999999887632 123456777888778899999999999988654
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=6.5e-10 Score=87.85 Aligned_cols=223 Identities=13% Similarity=-0.056 Sum_probs=143.1
Q ss_pred CChhHHHHHHHHHhhCC-CCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH
Q 020976 59 GRLRTARWILKELGDSG-HAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135 (319)
Q Consensus 59 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 135 (319)
+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35566666676666432 1222 3457777777888888888888888888765 556778888888888888888888
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215 (319)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
..|++..+.. +-+..++..+..++...|++++|.+.++...+..+ +..........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888753 23456777788888888888888888888887543 32211222222345677888888886655432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHH--HHHHHHhhccC-------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH
Q 020976 216 FDSNLEAYNCIVDRLGKDGKIDH--AINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286 (319)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (319)
+|+... ..+... ..|+... +.+.+...... ....|..+...+...|++++|...|++....++ ||.
T Consensus 196 -~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~ 270 (296)
T PRK11189 196 -DKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNF 270 (296)
T ss_pred -CccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chH
Confidence 232222 222222 3344332 33223221111 345788888889999999999999999887643 344
Q ss_pred HHHH
Q 020976 287 SAQK 290 (319)
Q Consensus 287 ~~~~ 290 (319)
.-+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4343
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=1e-10 Score=96.60 Aligned_cols=233 Identities=18% Similarity=0.118 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--C
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDS-----GH-APNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRK-----G--Y 111 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~ 111 (319)
.+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666655442 11 12222 2233555566666666666666665432 1 1
Q ss_pred CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-----CC-ccCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC
Q 020976 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV-QLDI-VSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GF 181 (319)
Q Consensus 112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 181 (319)
+.-..+++.|...|.+.|++++|..++++..+. |. .|.+ ..++.+...+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 122334555555666666666666655554331 11 1121 23455555666666677766666654321 11
Q ss_pred CCc----HHhHHHHHHHHhccCChhHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc--
Q 020976 182 ECD----KYTHTILIDGLCKAGNIKGARLHLEYMNKIG-------FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-- 248 (319)
Q Consensus 182 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 248 (319)
.++ ..++..+...|...|++++|.++++.++... ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 2356666777777777777777766665431 111134455666666666666666666654331
Q ss_pred ----C----CchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976 249 ----K----DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 249 ----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
+ ...+|..|...|...|+++.|.++.....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 23456677777777777777777766654
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=8.3e-10 Score=87.26 Aligned_cols=218 Identities=13% Similarity=-0.043 Sum_probs=157.6
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHH
Q 020976 94 RKYKLGLEILSAMKRKG-YTFD--GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (319)
+..+.++..+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45677777777777542 1221 3457777888999999999999999999863 446788999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-
Q 020976 171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 249 (319)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 249 (319)
..|+...+..+. +..++..+..++...|++++|...++...+.+ |+..........+...+++++|.+.|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999986444 45677888888899999999999999998864 44332222222345678899999999764433
Q ss_pred CchhHHHHHHHHHccCChhHHHHHHHHHHHc---CC--cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS---GV--RI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317 (319)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i 317 (319)
++..|.. .......|+...+ ..+..+.+. .+ .| ....|..+...+.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4444432 2333445666554 345544422 11 11 335788999999999999999999999887765
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=2.4e-09 Score=77.38 Aligned_cols=197 Identities=12% Similarity=0.023 Sum_probs=110.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
..-|.-.|.+.|+...|..-+++.+++.+. +..+|..+...|.+.|+.+.|.+-|++.....+. +....|.....++.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 334445566666666666666666655332 4555666666666666666666666666554322 45556666666666
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976 93 NRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
.|.+++|...|++..... +..-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 666666666666655432 12223455555556666666666666666665542 2233444555555666666666666
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
.++.....+. ++..+....|+.--..|+.+.+.+.=..+..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666555544 4555555555555566666555554444443
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=9.3e-10 Score=79.44 Aligned_cols=191 Identities=13% Similarity=0.052 Sum_probs=110.5
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199 (319)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
.|.-.|...|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++.....+. +....|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 34445666666666666666666542 234455556666666666666666666666554333 4445555555566666
Q ss_pred ChhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHH
Q 020976 200 NIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 275 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (319)
.+++|...|+.....- ..--..+|..+.-+..+.|+.+.|...|++.... .+.+...+.......|++-.|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 6666666666655541 1112345555666666666666666666655443 34455556666666666666666666
Q ss_pred HHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
.....+. ++.......|+.-.+.|+.+.+-++=.++.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6655444 566666666666666666666665554444
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8.5e-09 Score=80.84 Aligned_cols=305 Identities=10% Similarity=-0.030 Sum_probs=208.1
Q ss_pred CCCcchHhHHHHHHHHhhc--CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976 5 DLTPCTATFNIMLNGLCKN--RYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81 (319)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
.++|.-.+....+.++++. ++...|...+-.+... -++-|+.....+...+...|+.++|...|++....++. +..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~ 267 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVE 267 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhh
Confidence 3445555555555555543 4445555555444332 24557888899999999999999999999998764321 333
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
......-.+.+.|+.+....+...+.... .-+...|-.-+.......+++.|+.+-++.+..+ +-+...+-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 34444445667788888888877776543 2333444444455556678888888888887753 234555666667788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH-HHHHh-cCCHHHH
Q 020976 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV-DRLGK-DGKIDHA 239 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a 239 (319)
..+++++|.-.|+..+...+ .+...|.-++.+|.-.|.+.+|...-+...+. ++.+..+...+. ..+.- ..--++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 88999999999988876532 36778999999999999999888777666554 234555555442 22222 2235778
Q ss_pred HHHHHhhccCCc---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 240 INVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 240 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
..+++.....+| ...+.+...+...|+.+.++.++++.+. ..||....+.+.+.+...+.+++|.+.|....+.+
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 888887665543 3455666777888999999999988776 36788888999999999999999988887765443
No 72
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=7.8e-11 Score=100.02 Aligned_cols=254 Identities=13% Similarity=0.110 Sum_probs=171.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 020976 31 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110 (319)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (319)
.++-.+...|+.|+-.||..+|.-||..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34566777888888888888888888888888888 8888877777777888888888888877776665
Q ss_pred CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCcHHhHH
Q 020976 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-KQGFECDKYTHT 189 (319)
Q Consensus 111 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~ 189 (319)
.|.+.+|..|+.+|...||... |+...+ ....+...+...|--..-..++..+. ..+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 6677888888888888888765 222222 11223333444444444444443322 122333433
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhhcc-CCchhHHHHHHHHHccCCh
Q 020976 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK-DGKIDHAINVFESMEV-KDSFTYSSMVHNLCKAKRL 267 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 267 (319)
..+......|-++.+.+++..+....... .+..+++-+.. ...+++-..+...... +++.+|...+.+-...|+.
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence 23333344556666666654443221111 11112332222 2335555555555555 6999999999999999999
Q ss_pred hHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317 (319)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i 317 (319)
+.|..++.+|.+.|.+.+..-|..++-+ .++...+..+++.|++.|+
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv 267 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGV 267 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcC
Confidence 9999999999999999999888888766 8889999999999999886
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=8.3e-09 Score=86.47 Aligned_cols=263 Identities=16% Similarity=0.080 Sum_probs=184.6
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCChhhH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA-----GRLRTARWILKELGDSGHAPNAITY 83 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (319)
...........+.+.|+.++|..+|..+.++++. |..-|..+..+..-. .+.+...++|+++...- |...+.
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~ 113 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAP 113 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccch
Confidence 3445677888999999999999999999998643 555555555555222 35778888999887753 444443
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC----C----------Ccc
Q 020976 84 TTIMKCCFRNRKYK-LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----G----------VQL 148 (319)
Q Consensus 84 ~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~ 148 (319)
..+.-.+.....+. .+..++..+...|+| .+|+.+-..|.......-...++...... + -+|
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p 190 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP 190 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Confidence 33332233222333 355566777778854 35677777776555555556666655432 1 123
Q ss_pred Ch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 020976 149 DI--VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226 (319)
Q Consensus 149 ~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (319)
+. .++..+...|...|++++|++++++.++..+. .+..|..-.+.+-..|++.+|...++...+.+ .-|...-+..
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~ 268 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKC 268 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHH
Confidence 33 35567788899999999999999999987433 36688888999999999999999999999875 4566666677
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCc------------hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 227 VDRLGKDGKIDHAINVFESMEVKDS------------FTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
+..+.+.|++++|.+++......+. .-......+|.+.|++..|++.|....+
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7888999999999999988876631 1123446788899999998887766544
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.37 E-value=2.3e-08 Score=81.83 Aligned_cols=301 Identities=11% Similarity=-0.036 Sum_probs=187.5
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPEL-VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
...|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+++++..+..+ .+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence 44567777778888888888777777655322 1222 2222334456678999999999999887632 24444442 2
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 020976 88 KCCFR----NRKYKLGLEILSAMKRKGYTFD-GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162 (319)
Q Consensus 88 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (319)
..+.. .+..+.+.+.+... ....|+ ......+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 22222 34455555555441 111222 2333455567889999999999999999874 4456778889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CcH--HhHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCChhhH-H--HHHHHHHhcCC
Q 020976 163 EGKLEAAYLLLDEMEKQGFE-CDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAY-N--CIVDRLGKDGK 235 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~ 235 (319)
.|++++|...+++....... |+. ..|..+...+...|++++|..+++....... .+..... + .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999998875332 222 3455788889999999999999999864421 1111111 1 22333344443
Q ss_pred HHHHHHH---HHhhcc--C-CchhH--HHHHHHHHccCChhHHHHHHHHHHHcCCc------c--CHHHHHHHHHHHHhc
Q 020976 236 IDHAINV---FESMEV--K-DSFTY--SSMVHNLCKAKRLPSASKLLLSCLKSGVR------I--LKSAQKAVVDGLRHS 299 (319)
Q Consensus 236 ~~~a~~~---~~~~~~--~-~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~ 299 (319)
...+.++ ...... + ....+ .....++...|+.+.|..++..+...... . ..........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3322222 111111 1 11222 25667778899999999999988764222 0 122223333456789
Q ss_pred CCHHHHHHHHHHHHhh
Q 020976 300 GCRREAKKIQSKIRMA 315 (319)
Q Consensus 300 g~~~~a~~~~~~~~~~ 315 (319)
|++++|.+.+......
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998876543
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.5e-09 Score=82.93 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=205.6
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
++-|+.....+...+...|+.++|+..|+..+..++- +..........+...|+.+....+...+.... .-+...|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 5567888899999999999999999999998765321 23333333344567889999888888887642 224555555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976 86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
-........+++.|+.+-++.++.. +.+...+..-...+...+++++|.-.|+..... -|.+...|.-++.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhch
Confidence 5555667788999999999888764 445555555556788899999999999998875 24578899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHH-HHHh-ccCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 020976 166 LEAAYLLLDEMEKQGFECDKYTHTILI-DGLC-KAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINV 242 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 242 (319)
+.+|.-+-+...+. +.-+..+...+. ..|. ...--++|.++++.-.+. .|+ ....+.+...+...|..+.+..+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99998877766543 233555555542 3332 223457899999887765 344 45667788888999999999999
Q ss_pred HHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHH
Q 020976 243 FESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290 (319)
Q Consensus 243 ~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (319)
+++.... |....+.+...+...+.+++|.+.|...+..+++ |..+..
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl~ 509 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTLR 509 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHHH
Confidence 9987644 8888999999999999999999999998876432 444443
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.34 E-value=6.5e-11 Score=92.22 Aligned_cols=248 Identities=13% Similarity=0.069 Sum_probs=156.2
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (319)
+.+.-.|++..++.-.+ ........+......+.+++...|+++.+. .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 45566788888886666 333222234455666778888888876543 4444433 667666666655444334444
Q ss_pred HHHHHHHHHHhCCCC-CCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 98 LGLEILSAMKRKGYT-FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
.++.-++........ .++.........+...|++++|++++... .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555444444333222 12222222334456678999998887643 35666777888999999999999999999
Q ss_pred HHcCCCCcHHhHHHHHHHHh----ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---
Q 020976 177 EKQGFECDKYTHTILIDGLC----KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249 (319)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 249 (319)
.+. . +..+...+..++. ..+.+.+|..+|+++.+. .++++.+.+.+..+....|++++|.+++.+....
T Consensus 158 ~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 865 3 3334444555443 234688999999998664 4678888888888889999999999998887655
Q ss_pred CchhHHHHHHHHHccCCh-hHHHHHHHHHHHc
Q 020976 250 DSFTYSSMVHNLCKAKRL-PSASKLLLSCLKS 280 (319)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 280 (319)
++.+...++.+....|+. +.+.+.+.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 556666677777777777 5566777777654
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=7.9e-08 Score=76.92 Aligned_cols=253 Identities=13% Similarity=0.064 Sum_probs=137.2
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHH
Q 020976 57 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136 (319)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 136 (319)
..|++..|.++|+...+ ..|+..+|.+.++.-.+.+.++.|..+|++..-. .|+..+|.-....=.+.|+...+..
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 34555666666665554 3677777777777777777777777777776644 4677677666666667777777777
Q ss_pred HHHHHHhC-CC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------------
Q 020976 137 YMEQMVTD-GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----------------------------------- 179 (319)
Q Consensus 137 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------- 179 (319)
+|+...+. |- ..+...|.+....-.++..++.|.-+|+-.+..
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 77766553 10 111222333222222233333333333222111
Q ss_pred --------CCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh--hh-----HHHHHHHH---HhcCCHHHHHH
Q 020976 180 --------GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL--EA-----YNCIVDRL---GKDGKIDHAIN 241 (319)
Q Consensus 180 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~-----~~~l~~~~---~~~~~~~~a~~ 241 (319)
.-+.|..+|.-.++.-...|+.+...++|++.+.. ++|-. .. |..+=.++ ....+++.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 01224455556666666667777777777777654 34421 11 11111111 23556666666
Q ss_pred HHHhhccC---CchhHH----HHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 242 VFESMEVK---DSFTYS----SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 242 ~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
+++...+. ...+|. .......++.+...|.+++...+ |.-|-..+|...|..-.+.+++|..++++++..+
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66554432 222222 22333345556666666666554 4456666676666666667777777777666554
Q ss_pred hh
Q 020976 315 AK 316 (319)
Q Consensus 315 ~~ 316 (319)
.+
T Consensus 466 ~~ 467 (677)
T KOG1915|consen 466 FS 467 (677)
T ss_pred cC
Confidence 43
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=7.2e-08 Score=78.95 Aligned_cols=259 Identities=14% Similarity=0.046 Sum_probs=163.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHH
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPN-AITYTTIMKCCF 91 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 91 (319)
...+...|++++|.+.+++..+..+ .+...+.. ...+.. .+..+.+.+.+... ....|+ ......+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 4456778999999999999887633 24444442 222222 44555555555541 112233 344455667888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCC-ccCh--hhHHHHHHHHHhcCCHHH
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDI--VSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~ 168 (319)
..|++++|...+++..+.. +.+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999875 55677788888999999999999999999887522 1222 345578889999999999
Q ss_pred HHHHHHHHHHcCC-CCcHHhH-H--HHHHHHhccCChhHHHHH--HHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHH
Q 020976 169 AYLLLDEMEKQGF-ECDKYTH-T--ILIDGLCKAGNIKGARLH--LEYMNKIGFDS--NLEAYNCIVDRLGKDGKIDHAI 240 (319)
Q Consensus 169 a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 240 (319)
|..++++...... .+..... . .++.-+...|....+..+ +........+. ..........++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 9999999864432 1112111 1 223333444543333333 11111111111 1122235666778899999999
Q ss_pred HHHHhhccC--C----------chhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 241 NVFESMEVK--D----------SFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 241 ~~~~~~~~~--~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
.+++.+... . ....-.....+...|+.++|.+.+...+..
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999877542 1 112222233455789999999999887654
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.21 E-value=1.5e-09 Score=84.77 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=159.4
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH
Q 020976 53 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132 (319)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 132 (319)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34456788888876555 332222223445566778888888876543 4444333 555555544444443334445
Q ss_pred HHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHH
Q 020976 133 EATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211 (319)
Q Consensus 133 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
.++.-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554444332222 2223333335566678899888887643 25566677788888899999999999988
Q ss_pred HhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976 212 NKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284 (319)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (319)
.+.+ +..+...+..++.. .+.+.+|.-+|+++... ++.+.+.+..++...|++++|.+++.+....+..
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 8643 33455556665543 33588899999988765 6677788888888899999999999888765433
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhhccC
Q 020976 285 LKSAQKAVVDGLRHSGCR-REAKKIQSKIRMAKISH 319 (319)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~i~h 319 (319)
++.+...++.+....|+. +.+.+++.+++.....|
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 667777788888888887 67788888888877766
No 80
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=1.2e-07 Score=75.07 Aligned_cols=215 Identities=8% Similarity=0.014 Sum_probs=143.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
++..+-..+...++.++|+.+.+++++.+.. +..+|+....++...| ++++++..++++.....+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 4555666677778889999999988876433 4556666666666666 578889988888876544 566677665555
Q ss_pred HhcCCh--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc---CC
Q 020976 91 FRNRKY--KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE---GK 165 (319)
Q Consensus 91 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 165 (319)
.+.+.. ++++.+++++.+.. +-+..+|.....++.+.|+++++++.++++++.+. -+..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 566653 66788888887765 55777888888888888888889998888888653 3566666665555443 22
Q ss_pred H----HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc----CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 020976 166 L----EAAYLLLDEMEKQGFECDKYTHTILIDGLCKA----GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232 (319)
Q Consensus 166 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (319)
. ++.++...+.+...+. +...|+.+...+... +...++...+.+..+.+ +.+...+..+++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 4566666666665443 556666666666552 33455666666665543 3455666667777664
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=7e-07 Score=74.26 Aligned_cols=296 Identities=10% Similarity=0.076 Sum_probs=194.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------C------ChhHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA----------------G------RLRTARWILK 69 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~ 69 (319)
.|++|.+.|.+.|.+++|.++|++..+. ..++.-|..+.++|+.- + +++-....|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4889999999999999999999997764 22444555555555432 1 1233344444
Q ss_pred HHhhCCC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------cccHHHHHHHHHHcCchH
Q 020976 70 ELGDSGH-----------APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD------GFGYCTVIAAFVKIGRLK 132 (319)
Q Consensus 70 ~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~ 132 (319)
.+...+. +-++..|..-... ..|+..+....|.+..+. +.|. ...|..+...|-..|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 4443211 1234444444333 345666777777777654 2222 245788889999999999
Q ss_pred HHHHHHHHHHhCCCccC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CC-------cHHhHHHHH
Q 020976 133 EATDYMEQMVTDGVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF----------EC-------DKYTHTILI 192 (319)
Q Consensus 133 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~-------~~~~~~~l~ 192 (319)
.|..+|++...-..+-- ..+|......=.+..+++.|+++++......- .| +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999987643322 23455555666677889999998887653211 11 234566666
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----CchhHHHHHHHHHc---c
Q 020976 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCK---A 264 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~---~ 264 (319)
..--..|-++....+++++.+..+ .++.........+..+.-++++.+++++-... -...|+..+..+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 666677899999999999998764 34444444455556677799999999986543 33567777766654 3
Q ss_pred CChhHHHHHHHHHHHcCCccCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 265 KRLPSASKLLLSCLKSGVRILKSA--QKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
...+.|..+|+++++ |++|...- |......--+.|-...|..++++...
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467999999999999 67775432 22222333457888999999988643
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=7e-07 Score=74.21 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=67.3
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+..+|..+.-.+....++++|++.|......+.. |...|.-+.-.-++.|+++.....-..+.+..+ -....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHH
Confidence 3455666666666667777777777777665433 566666666566666666666666555555321 24455666666
Q ss_pred HHHhcCChhHHHHHHHHHHhCC-CCCCcccHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKG-YTFDGFGYC 119 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 119 (319)
++.-.|+...|..++++..+.. ..|+...+.
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 6777777777777777776553 234444443
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=1e-06 Score=67.95 Aligned_cols=295 Identities=9% Similarity=0.010 Sum_probs=192.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH-HHHHHHHH
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY-TTIMKCCF 91 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 91 (319)
.--+-..+...|++.+|+.-|....+.++. +-.++-.-...|...|+-.-|+.-+....+. +||-..- ..-...+.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 334555666677888888888777764221 2233333445677778878888777777763 5553221 12234567
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcc----c------------HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGF----G------------YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~----~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
+.|.++.|..-|+.+.+.. |+.. . ....+..+.-.|+...|+.....+.+. .+-+...|..
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~ 194 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQA 194 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHH
Confidence 8888999988888888763 2211 1 112233455678888888888888876 3457777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH-------HHH-
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN-------CIV- 227 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~- 227 (319)
-..+|...|++..|+.=++...+..-. +..++..+-..+...|+.+.++...++..+. .|+....- .+.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence 888888889888888777776655433 4455556667777888888888888777764 35532211 111
Q ss_pred -----HHHHhcCCHHHHHHHHHhhccCCc-------hhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc-CHHHHHHHHH
Q 020976 228 -----DRLGKDGKIDHAINVFESMEVKDS-------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-LKSAQKAVVD 294 (319)
Q Consensus 228 -----~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 294 (319)
......+++.++.+-.+...+.++ ..+..+-.++...+++.+|+....+.++. .| |..++..-..
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHH
Confidence 122345666666666665554422 23445556677788888888888888764 44 4677777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhhhcc
Q 020976 295 GLRHSGCRREAKKIQSKIRMAKIS 318 (319)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~i~ 318 (319)
+|.-..++|.|+.-|++..+-+-+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcc
Confidence 888888888888888887766544
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=1.8e-06 Score=73.20 Aligned_cols=305 Identities=16% Similarity=0.109 Sum_probs=184.6
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHH
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYT 84 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 84 (319)
+.-+...|..+.-++...|+++.+.+.|++....-+. ....|+.+...|...|.-..|..++++.......|+ +..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4457788888888999999999999999887653222 455666666666666666666666665544322222 22222
Q ss_pred HHHHHHHh-cCChhHHHHHHHH--------------------------------------------------HHhCCCCC
Q 020976 85 TIMKCCFR-NRKYKLGLEILSA--------------------------------------------------MKRKGYTF 113 (319)
Q Consensus 85 ~l~~~~~~-~~~~~~a~~~~~~--------------------------------------------------~~~~~~~~ 113 (319)
..-+.|.+ .+..++++.+..+ ..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 22222221 2333333333333 32222 22
Q ss_pred CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-----------
Q 020976 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GF----------- 181 (319)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~----------- 181 (319)
|+...-.+.--|+..++.+.|....++..+.+...+...|..+.-.+...+++.+|+.+.+..... |.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 222222233345555677777777777776644556666666666666666666666665433211 00
Q ss_pred --------------------------------------------------------------------------------
Q 020976 182 -------------------------------------------------------------------------------- 181 (319)
Q Consensus 182 -------------------------------------------------------------------------------- 181 (319)
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence
Q ss_pred ----CCc------HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--
Q 020976 182 ----ECD------KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249 (319)
Q Consensus 182 ----~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 249 (319)
.|+ ...|......+.+.+..+++...+.+..+.. +.....|......+...|..++|.+.|......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 000 0012223333344444455554544444432 334445555556667788888888888876543
Q ss_pred -CchhHHHHHHHHHccCChhHHHH--HHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 250 -DSFTYSSMVHNLCKAKRLPSASK--LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 250 -~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
++.+..++...+.+.|+..-|.. ++..+++.+.. +...|..+...+.+.|+.++|.+.|.-.-+
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 56678889999999998887777 99999987543 889999999999999999999999876543
No 85
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=7.5e-08 Score=80.85 Aligned_cols=220 Identities=15% Similarity=0.079 Sum_probs=176.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHH
Q 020976 77 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (319)
+|-...-..+...+...|-...|..+++++. .|.-++.+|...|+..+|..+..+..+. +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444556677788899999999998764 4667788999999999999998888873 6888889888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (319)
........-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88888888889999988876432 22233333345789999999999888765 56678888888999999999
Q ss_pred HHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 237 DHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 237 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
+.|.+.|...... +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.++.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999876643 67899999999999999999999999999887 4466778778888889999999999998886
Q ss_pred hhh
Q 020976 314 MAK 316 (319)
Q Consensus 314 ~~~ 316 (319)
...
T Consensus 615 ~~~ 617 (777)
T KOG1128|consen 615 DLR 617 (777)
T ss_pred Hhh
Confidence 543
No 86
>PF12854 PPR_1: PPR repeat
Probab=99.07 E-value=2e-10 Score=57.84 Aligned_cols=33 Identities=27% Similarity=0.614 Sum_probs=24.4
Q ss_pred CCCCcchHhHHHHHHHHhhcCChHHHHHHHHHH
Q 020976 4 GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL 36 (319)
Q Consensus 4 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 36 (319)
.|+.||..+||.+|.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367777777777777777777777777777766
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.07 E-value=3.5e-07 Score=82.18 Aligned_cols=242 Identities=14% Similarity=0.073 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC---CCcccHHHHHHHHHHcCchHHHHH
Q 020976 61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYT---FDGFGYCTVIAAFVKIGRLKEATD 136 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~~~~~~a~~ 136 (319)
++.|.++-..++.+ +-+...|...|......++.++|.++.++.... ++. --...|.++++.-..-|.-+...+
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 33444444444432 224677889999999999999999999988754 111 123457778887777888889999
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCC
Q 020976 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF 216 (319)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (319)
+|+++.+. -.....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+.++.-
T Consensus 1519 VFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l- 1594 (1710)
T KOG1070|consen 1519 VFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL- 1594 (1710)
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-
Confidence 99999885 224567889999999999999999999999875 23467789999999999999999999999988752
Q ss_pred CC--ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH--HHH
Q 020976 217 DS--NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK--SAQ 289 (319)
Q Consensus 217 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 289 (319)
+. ........+..-.+.|+.+.++.+|+..... ....|+.++..-.+.|+.+.+..+|++....++.|-. ..|
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 22 3345555666677899999999999987654 5679999999999999999999999999999887743 466
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 020976 290 KAVVDGLRHSGCRREAKKI 308 (319)
Q Consensus 290 ~~l~~~~~~~g~~~~a~~~ 308 (319)
...+..-...|+-..+..+
T Consensus 1675 KkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHhcCchhhHHHH
Confidence 6677666667775544433
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=7.7e-08 Score=78.65 Aligned_cols=246 Identities=12% Similarity=0.065 Sum_probs=171.3
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976 54 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 133 (319)
-+.+.|++.+|.-.|+......+. +...|..|.......++-..|+..+.+..+.. +-+....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 345778888888888888776544 78888888888888888888888888888775 5566677777778888888888
Q ss_pred HHHHHHHHHhCCCccChhhHHHHH-----------HHHHhcCCHHHHHHHHHHHHH-cCCCCcHHhHHHHHHHHhccCCh
Q 020976 134 ATDYMEQMVTDGVQLDIVSYNTLI-----------NLYCKEGKLEAAYLLLDEMEK-QGFECDKYTHTILIDGLCKAGNI 201 (319)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
|++.++.-+....+ |..+. ..+.....+....++|-++.. .+..+|+.....|.-.|.-.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 88888877654211 00000 111112223444555555543 34346777778888888888899
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
++|...|+..+... |-|..+|+.|...++...+.++|+..|.+.... =+.+...|.-.|...|.+++|.+.|-..+
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999888764 556688888888888888899999999887754 33456667777888899998888877655
Q ss_pred Hc---------CCccCHHHHHHHHHHHHhcCCHHHHHH
Q 020976 279 KS---------GVRILKSAQKAVVDGLRHSGCRREAKK 307 (319)
Q Consensus 279 ~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 307 (319)
.. +..++...|..|=.++.-.++.|-+.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 42 112234566666666666666664433
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=2.1e-06 Score=71.46 Aligned_cols=132 Identities=13% Similarity=0.037 Sum_probs=93.3
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 020976 19 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98 (319)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (319)
.+...|+.++|.+......+..++ +..+|..+.-.+....++++|++.|......+.. |...|.-+...-++.|+++.
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhh
Confidence 344557777777777776665554 6777888877777788888888888888776433 66777777666677778887
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC-CccChhhH
Q 020976 99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSY 153 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 153 (319)
......++.+.. +.....|..+..++.-.|+...|..++++..... -.|+...+
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 777777776653 3445567777778888899999999988887753 23444433
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=3.5e-06 Score=77.84 Aligned_cols=301 Identities=8% Similarity=-0.010 Sum_probs=195.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hh
Q 020976 15 IMLNGLCKNRYTDNALRMFRGLQKHGF------VPE--LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA----IT 82 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 82 (319)
.....+...|++++|..+++...+.-. .+. ......+...+...|++++|...+++........+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 344556678899999999887754211 111 122233345566789999999999988763111121 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CcccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCc--c-Ch
Q 020976 83 YTTIMKCCFRNRKYKLGLEILSAMKRKGY---TF--DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ--L-DI 150 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 150 (319)
.+.+...+...|++++|...+++.....- .+ ....+..+...+...|+++.|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45566667789999999999888764311 11 1233455666778899999999998876652 211 1 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-ChhhH--
Q 020976 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQG--FEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAY-- 223 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-- 223 (319)
..+..+...+...|++++|...+.+..... ..+ ....+..+.......|+++.|...+.......... ....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455667778899999999998875421 112 23344556667788999999999988875531111 11111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHhhccCC---ch----hHHHHHHHHHccCChhHHHHHHHHHHHc----CCcc-CHHH
Q 020976 224 ---NCIVDRLGKDGKIDHAINVFESMEVKD---SF----TYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRI-LKSA 288 (319)
Q Consensus 224 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 288 (319)
...+..+...|+.+.|..++....... .. .+..+..++...|++++|...+++.... |..+ ...+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 112244556899999999987765441 11 1345677788899999999999987753 3322 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 289 QKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
...+..++.+.|+.++|...+.+..+.
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667778889999999999998887543
No 91
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=1.1e-06 Score=69.71 Aligned_cols=212 Identities=8% Similarity=0.023 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (319)
++..+-..+...+..++|+.+.+++....+. +..+|+..-.++...| ++++++..++++.+.. +-+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3444555556677888888888888875332 4556666656666666 5688888888887764 44555666665555
Q ss_pred HHcCch--HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc---CC
Q 020976 126 VKIGRL--KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA---GN 200 (319)
Q Consensus 126 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 200 (319)
.+.|+. ++++.+++.+.+.. +-+..+|+....++...|+++++++.++++++.++. +...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 566653 56777777777653 346777888778888888888888888888877655 555555555444433 22
Q ss_pred h----hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHhhccC---CchhHHHHHHHHHc
Q 020976 201 I----KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD----GKIDHAINVFESMEVK---DSFTYSSMVHNLCK 263 (319)
Q Consensus 201 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 263 (319)
. ++.......++... +-+...|+.+...+... ++..+|.+.+.+.... ++.....++..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 2 34455554555443 44556666665555552 2334455555554332 33444455555543
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.4e-07 Score=77.23 Aligned_cols=247 Identities=12% Similarity=0.008 Sum_probs=183.7
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (319)
.-+.+.|++.+|.-.|+...+.++. +...|..|.......++-..|+..+.+..+..+. |....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 3466789999999999998887554 7899999999999999999999999999986433 6788888888999999989
Q ss_pred HHHHHHHHHHhCCCC--------CCcccHHHHHHHHHHcCchHHHHHHHHHHHh-CCCccChhhHHHHHHHHHhcCCHHH
Q 020976 98 LGLEILSAMKRKGYT--------FDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
.|++.++.-.....+ ++...-.. ..+.....+....++|-++.. .+..+|..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999998877544210 00000000 111222233445555555544 4444788888999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
|.+.|+..+...+. |...|+.|...++...+.++|+..|.+.++. .|+ +++...|.-+|...|.+++|...|-...
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999987544 7789999999999999999999999999986 454 4666778888999999999999887654
Q ss_pred cC-------------CchhHHHHHHHHHccCChhHHH
Q 020976 248 VK-------------DSFTYSSMVHNLCKAKRLPSAS 271 (319)
Q Consensus 248 ~~-------------~~~~~~~l~~~~~~~~~~~~a~ 271 (319)
.- +...|..|=.++.-.++.|.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 21 1235666655565566655333
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=2.5e-07 Score=71.05 Aligned_cols=185 Identities=11% Similarity=0.021 Sum_probs=101.7
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh--hhHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-P-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA--ITYTT 85 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 85 (319)
...+..+...+...|++++|...|+++...... | ...++..+..++...|++++|...++++.+..+.... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 444555555666666666666666666553221 1 1134455566666666666666666666553221111 12333
Q ss_pred HHHHHHhc--------CChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHH
Q 020976 86 IMKCCFRN--------RKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156 (319)
Q Consensus 86 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (319)
+..++... |+++.|.+.++.+.+. .|+. ..+..+..... ... .. ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHHHHHH
Confidence 33344332 4555666666666544 2222 11111110000 000 00 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-C-cHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976 157 INLYCKEGKLEAAYLLLDEMEKQGFE-C-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
...+.+.|++++|...+....+.... | ....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788899999999999998876321 2 3467788888999999999999988887754
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.98 E-value=1.1e-06 Score=77.76 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=92.6
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+.+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 4556777777777788888888887766654221 333344444455555554444333 2223
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
......++..+..++..+... .-+...+-.+..+|-+.|+.+++..+++++.+.. +-++.+.|.+...|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333333443333444444443 2334466777788888888888888888888765 45677788888888877 8888
Q ss_pred HHHHHHHHHHc
Q 020976 169 AYLLLDEMEKQ 179 (319)
Q Consensus 169 a~~~~~~~~~~ 179 (319)
|.+++.+....
T Consensus 168 A~~m~~KAV~~ 178 (906)
T PRK14720 168 AITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHH
Confidence 88887776653
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.98 E-value=9.3e-10 Score=55.41 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=31.9
Q ss_pred cCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
+|+.||..+|+.+|.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999985
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=5e-07 Score=69.36 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=45.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCC--ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 256 SMVHNLCKAKRLPSASKLLLSCLKSGV--RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
.+...+...|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455667888889999988888877522 123467788888899999999999888877654
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=6.8e-07 Score=75.32 Aligned_cols=237 Identities=14% Similarity=0.095 Sum_probs=179.9
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
++|--..=..+...+...|-...|..+|+++. .|.-++.+|...|+..+|..+..+..+. +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 44444444566777888899999999987753 5566778888899999999998888773 678888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976 86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
+.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888776666688888887765433 11222223334789999999998877753 3466788888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
++.|.+.|.......+. +...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999988875332 45689999999999999999999999999887 55667788888888999999999999988
Q ss_pred hccC-----CchhHHHHHHHHHc
Q 020976 246 MEVK-----DSFTYSSMVHNLCK 263 (319)
Q Consensus 246 ~~~~-----~~~~~~~l~~~~~~ 263 (319)
+... |..+...++....+
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHh
Confidence 7533 55665555555443
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.1e-06 Score=65.18 Aligned_cols=160 Identities=12% Similarity=0.031 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976 84 TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
..+-..+.-.|+-+....+........ +.|.......+....+.|++..|...+.+.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 444455555666665555555543221 334444455666666667777777777666654 355666677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (319)
|+++.|..-|.+..+.... ++...+.+.-.+.-.|+.+.|..++......+ +-+..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777766666665332 44455666666666677777777766666543 335555666666666677777776666
Q ss_pred Hhhc
Q 020976 244 ESME 247 (319)
Q Consensus 244 ~~~~ 247 (319)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=1.5e-06 Score=78.41 Aligned_cols=239 Identities=11% Similarity=0.009 Sum_probs=175.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-----ChhhHHHHHHHHHhcCChhHHHHH
Q 020976 28 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-----NAITYTTIMKCCFRNRKYKLGLEI 102 (319)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~ 102 (319)
.|.+. +++... -+-+...|-..|......++.++|.++.++.+.. +.+ -...|.++++.-...|.-+...++
T Consensus 1443 saeDf-erlvrs-sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDF-ERLVRS-SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHHH-HHHHhc-CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 34443 444333 2335667888888888999999999999988763 222 234577777777777878888899
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 020976 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (319)
|+++.+.. -....|..|...|.+.+..++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-++
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99988763 23456888999999999999999999999886 3356778889999999999999999999988875222
Q ss_pred C-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC------chhHH
Q 020976 183 C-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD------SFTYS 255 (319)
Q Consensus 183 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~ 255 (319)
. ........+..-.+.|+.+.+..+|+-..... |.-...|+.+++.-.++|+.+.++.+|+++.... -..|.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 1 22344555556668899999999999888753 5567889999999999999999999999987652 23566
Q ss_pred HHHHHHHccCChhHHHHH
Q 020976 256 SMVHNLCKAKRLPSASKL 273 (319)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~ 273 (319)
..+..--..|+-+.+..+
T Consensus 1676 kwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHhcCchhhHHHH
Confidence 666555556665544443
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=6.9e-07 Score=66.03 Aligned_cols=120 Identities=9% Similarity=0.032 Sum_probs=70.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHH-HhcCC--HHHH
Q 020976 93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY-CKEGK--LEAA 169 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 169 (319)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555544 5556666666666666666666666666666642 23455555555543 45455 3666
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
.+++++..+.++. +...+..+...+...|++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666665443 45555666666666666666666666666553
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.91 E-value=8.8e-07 Score=65.70 Aligned_cols=160 Identities=13% Similarity=0.055 Sum_probs=116.8
Q ss_pred CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 020976 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193 (319)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
|... ..+-..+...|+-+....+....... .+.+.......+....+.|++..|...+++..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 55566677777777777777665543 23355556667888888888888888888887653 447788888888
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHH
Q 020976 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 270 (319)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 270 (319)
+|.+.|+++.|..-|.+..+.. +-+...++.+.-.+.-.|+.+.|..++...... +..+-..+.......|++++|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 8888888888888888887763 345567777888888888888888888765533 677777788888888888888
Q ss_pred HHHHHHH
Q 020976 271 SKLLLSC 277 (319)
Q Consensus 271 ~~~~~~~ 277 (319)
..+...-
T Consensus 222 ~~i~~~e 228 (257)
T COG5010 222 EDIAVQE 228 (257)
T ss_pred Hhhcccc
Confidence 8776554
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1e-05 Score=66.10 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=68.3
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCh
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKY 96 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 96 (319)
.+.+..|+++.|+..|.+...... +|...|..-..+|++.|++++|.+=-.+-.+ +.|+ +..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 456678889999999988887644 3888888888888888888888776666655 3555 45678888888888888
Q ss_pred hHHHHHHHHHHhC
Q 020976 97 KLGLEILSAMKRK 109 (319)
Q Consensus 97 ~~a~~~~~~~~~~ 109 (319)
++|+..|.+-.+.
T Consensus 87 ~eA~~ay~~GL~~ 99 (539)
T KOG0548|consen 87 EEAILAYSEGLEK 99 (539)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888776654
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4.1e-06 Score=62.34 Aligned_cols=259 Identities=11% Similarity=0.034 Sum_probs=149.7
Q ss_pred CCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh
Q 020976 3 CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 82 (319)
Q Consensus 3 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (319)
..+..|+...|+ ++-+.-.|++..++..-....... -+...-.-+.++|...|++..... +..... .|....
T Consensus 3 ~~~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqA 74 (299)
T KOG3081|consen 3 SMEAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQA 74 (299)
T ss_pred ccccCcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHH
Confidence 334445444454 355555677777776655443321 344444556667777776654432 222221 333444
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976 83 YTTIMKCCFRNRKYKL-GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
+..+......-++.+. ..++.+.+.......+......-...|.+.|++++|++...... +......=...+.
T Consensus 75 vr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 75 VRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHH
Confidence 4444333333333333 23344444444333333333334456778888888888776622 2333333445566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHh----ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC----KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (319)
+..+.+-|.+.+++|.+. . +..|.+.|..++. ..+....|..+|++|-+. .+|+..+.+-...++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHH
Confidence 777888888888888764 2 5556666666654 334677888888888764 4678888888888888888888
Q ss_pred HHHHHHHhhccC---CchhHHHHHHHHHccCChhHH-HHHHHHHHH
Q 020976 238 HAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA-SKLLLSCLK 279 (319)
Q Consensus 238 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 279 (319)
+|..+++....+ ++.+...++.+-...|...++ .+.+.++..
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 888888887755 556665555555555655433 344455444
No 104
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.86 E-value=3.3e-05 Score=64.75 Aligned_cols=297 Identities=12% Similarity=0.127 Sum_probs=168.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
.|-..+..+.++|++..-...|+..+.. -+..-...|...+......+-++.+.+++++..+. ++..-+..+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 3444555556667777777777665543 11122345666666666666666777777766652 333355566666
Q ss_pred HhcCChhHHHHHHHHHHhCC------CC------------------------------------CC--cccHHHHHHHHH
Q 020976 91 FRNRKYKLGLEILSAMKRKG------YT------------------------------------FD--GFGYCTVIAAFV 126 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~------~~------------------------------------~~--~~~~~~ll~~~~ 126 (319)
+..+++++|.+.+....... .+ +| ...|+.|...|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 66666666666665553211 01 11 123666777777
Q ss_pred HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHcC----
Q 020976 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK----------------------LEAAYLLLDEMEKQG---- 180 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~---- 180 (319)
+.|.+++|..+|++.... ..++.-|+.+..+|..... ++-.+..|+.+....
T Consensus 260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 777777777777776664 2344455555555543211 111222222222211
Q ss_pred -------CCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 181 -------FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN------LEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 181 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
-..+...|..-+. ...|+..+....+.+..+. +.|. ...|..+...|...|+++.|+.+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 0112223332222 2245566667777776654 2221 2456778888888999999999999877
Q ss_pred cCCc-------hhHHHHHHHHHccCChhHHHHHHHHHHHcCCc----------c-------CHHHHHHHHHHHHhcCCHH
Q 020976 248 VKDS-------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR----------I-------LKSAQKAVVDGLRHSGCRR 303 (319)
Q Consensus 248 ~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~g~~~ 303 (319)
..+- .+|-.....-.+..+++.|+++.+......-. | +...|..+++..-..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 6533 34444445555677888888888776542111 1 2235666666666778888
Q ss_pred HHHHHHHHHHhhhc
Q 020976 304 EAKKIQSKIRMAKI 317 (319)
Q Consensus 304 ~a~~~~~~~~~~~i 317 (319)
.-..+++++-...|
T Consensus 495 stk~vYdriidLri 508 (835)
T KOG2047|consen 495 STKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888766544
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=4e-07 Score=67.31 Aligned_cols=162 Identities=7% Similarity=0.043 Sum_probs=121.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
-+..|...|+++.+....+.+.. |. . .+...++.+++...++......+ .+...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCC
Confidence 34568889999887555433221 11 0 12236677888888888877653 488999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHH-HHcCc--hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAF-VKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
+++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.. +.+..++..+...+.+.|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999886 55777788887764 67777 599999999999874 34778889999999999999999999
Q ss_pred HHHHHHcCCCCcHHhHHHHHHH
Q 020976 173 LDEMEKQGFECDKYTHTILIDG 194 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~ 194 (319)
|+++.+... |+..-+ .+|..
T Consensus 167 ~~~aL~l~~-~~~~r~-~~i~~ 186 (198)
T PRK10370 167 WQKVLDLNS-PRVNRT-QLVES 186 (198)
T ss_pred HHHHHhhCC-CCccHH-HHHHH
Confidence 999988643 344333 34443
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=1.7e-05 Score=61.46 Aligned_cols=258 Identities=12% Similarity=0.032 Sum_probs=188.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhh-----------
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTY-NILIKGLCKAGRLRTARWILKELGDSGHAPN--AIT----------- 82 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~----------- 82 (319)
...|...|+...|+.=+++.++. +||-..- ..-...+.+.|.++.|..-|+.+......-+ ...
T Consensus 79 aT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~ 156 (504)
T KOG0624|consen 79 ATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW 156 (504)
T ss_pred HHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence 44677889988899888888874 6764432 2234567799999999999999988643211 111
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976 83 -YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 83 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
....+..+...|+...|+.....+.+.. +.|...+..-..+|...|++..|+.-++...+.. ..++.++..+-..+.
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHH
Confidence 2233455667899999999999999875 7788889999999999999999998888777653 346667777888889
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHH----hHHHH---------HHHHhccCChhHHHHHHHHHHhcCCC---CChhhHHH
Q 020976 162 KEGKLEAAYLLLDEMEKQGFECDKY----THTIL---------IDGLCKAGNIKGARLHLEYMNKIGFD---SNLEAYNC 225 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ 225 (319)
..|+.+.++...++.++. .||.. .|..+ +....+.++|.++..-.+...+.... .....+..
T Consensus 235 ~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 999999999999998875 44432 12211 12234556777787777777766422 12345566
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 226 IVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
+-.++...+++.+|++...++... |..++---..+|.-...++.|+.-|+...+.
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 677888899999999999887765 4556666677888888888888888887765
No 107
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=2e-05 Score=61.29 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=88.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+.-+....++..|+.+++--...+-.....+-..+..++...|++++|...+..+... -.|+...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 3445556677777777766544333222223333455666777888887777777663 344555566665555566666
Q ss_pred hHHHHHHHHHHhCCC-------------------------CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChh
Q 020976 97 KLGLEILSAMKRKGY-------------------------TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~-------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (319)
.+|..+-.+..+..+ .-+...-.+|.......-.+++|+.++.+.... .|...
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 666655544321100 000111122223333334567777777777664 23444
Q ss_pred hHHH-HHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 152 SYNT-LINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 152 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
..|. +.-+|.+..-++-+.++++-..++
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 4443 344566777778888888777765
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=8.5e-07 Score=62.06 Aligned_cols=95 Identities=6% Similarity=-0.106 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 020976 48 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (319)
+..+...+...|++++|...|+.+....+ .+...|..+..++...|++++|...|++..... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 44455556666666666666666665432 255666666666666666666666666666554 4455666666666666
Q ss_pred cCchHHHHHHHHHHHhC
Q 020976 128 IGRLKEATDYMEQMVTD 144 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~ 144 (319)
.|++++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666654
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.3e-05 Score=59.38 Aligned_cols=189 Identities=18% Similarity=0.161 Sum_probs=130.0
Q ss_pred cCChHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976 23 NRYTDNALRMFRGLQK---HG-FVPELV-TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (319)
..+.++.++++..+.. .| ..|+.. .|..++-+....|+.+.|...++++.+.- +-+...-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3567888888887754 23 445544 35566667777888888888888887753 222222222223345568888
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 98 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
+|.++++.+.+.+ +.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888776 666677776666666777777888888777776 56688888888888888888888888888887
Q ss_pred HcCCCCcHHhHHHHHHHHhccC---ChhHHHHHHHHHHhcC
Q 020976 178 KQGFECDKYTHTILIDGLCKAG---NIKGARLHLEYMNKIG 215 (319)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 215 (319)
-..+. ++..|..+...+.-.| +.+.+.+.|.+..+..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 65332 4555566666544333 5566777777777654
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=9.4e-06 Score=75.08 Aligned_cols=266 Identities=14% Similarity=0.042 Sum_probs=175.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCChhhHHHH
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS----GH-APNAITYTTI 86 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 86 (319)
+...+...|++++|...++...+.-...+. ...+.+...+...|++++|...+++.... |. .+...++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 344566789999999999998763111121 34466667778899999999999888642 11 1112345566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCC---CcccHHHHHHHHHHcCchHHHHHHHHHHHhC--CCcc--ChhhHHH
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRK----GYTF---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQL--DIVSYNT 155 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~ 155 (319)
...+...|++++|...+++.... +... ....+..+...+...|++++|...+++.... ...+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 67788899999999998876542 2111 1222344555677789999999999887653 1111 2334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhH-----HHHHHHHhccCChhHHHHHHHHHHhcCCCCC---hhhHHHH
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTH-----TILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCI 226 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 226 (319)
+...+...|++++|...+.......... ....+ ...+..+...|+.+.+...+........... ......+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 6677888999999999998875421110 11111 1122444567899999988776554221111 1113456
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020976 227 VDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281 (319)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (319)
..++...|+.++|...+++.... ...+...+..++...|+.++|...+.+..+..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77788999999999999876543 22355666778889999999999999988763
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=1e-06 Score=77.00 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=119.9
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
+..++..+-.|.....+.|++++|..+++...+..+. +......+...+.+.+++++|...+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 4556888899999999999999999999999886333 5677788889999999999999999999987544 6778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976 86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+. ..+....|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 8889999999999999999999743 455788888999999999999999999998775 2233344443
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=5.2e-05 Score=62.91 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=35.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 020976 15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 69 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 69 (319)
+=++.+...|++++|....+++...+. -+...+..-+-+..+.+++++|+.+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ik 70 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIK 70 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHH
Confidence 345667778888888888888887653 244555555556666777777765443
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=4.6e-07 Score=63.40 Aligned_cols=108 Identities=10% Similarity=-0.179 Sum_probs=90.9
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
+..+..+...+...|++++|...|+......+ .+...|..+..++...|++++|...|+....... .+...+..+..+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~ 101 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 33466678889999999999999999988754 3889999999999999999999999999998653 478899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 020976 90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (319)
+...|++++|...|+...+.. +.++..+..
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~ 131 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMS-YADASWSEI 131 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 999999999999999998874 334444433
No 114
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=1.2e-05 Score=68.59 Aligned_cols=252 Identities=12% Similarity=0.038 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 020976 26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105 (319)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (319)
..++++.+++..+.+.. |+...-.+.--|+..++.+.|.+...+..+.+..-++..|..+...+...+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 35677788888775443 33333334445777889999999999998876666888999998888899999999998877
Q ss_pred HHhC-CCC------------------CCcccHHHHHHHHHH------c-----------------CchHHHHHHHHHHH-
Q 020976 106 MKRK-GYT------------------FDGFGYCTVIAAFVK------I-----------------GRLKEATDYMEQMV- 142 (319)
Q Consensus 106 ~~~~-~~~------------------~~~~~~~~ll~~~~~------~-----------------~~~~~a~~~~~~~~- 142 (319)
.... |.. .-..|+..++..+-. . ++..++.+....+.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 6543 110 001112222221110 0 01111111111110
Q ss_pred -------hCC---------Cc--cC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976 143 -------TDG---------VQ--LD------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198 (319)
Q Consensus 143 -------~~~---------~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (319)
..| +. |+ ...|......+.+.+..++|...+.+..... ......|......+...
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHH
Confidence 001 00 11 1124455566777788888887777776653 23556677777788889
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHhhccC---CchhHHHHHHHHHccCChhHHHHH
Q 020976 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN--VFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL 273 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 273 (319)
|.+++|...|......+ |.++....++..++.+.|+...|.. ++..+... ++..|..+...+-+.|+.+.|.+.
T Consensus 698 ~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 99999999999888764 4556888999999999999888877 88877654 788999999999999999999999
Q ss_pred HHHHHHc
Q 020976 274 LLSCLKS 280 (319)
Q Consensus 274 ~~~~~~~ 280 (319)
|+.....
T Consensus 777 f~aa~qL 783 (799)
T KOG4162|consen 777 FQAALQL 783 (799)
T ss_pred HHHHHhh
Confidence 9988765
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=5.8e-06 Score=61.59 Aligned_cols=224 Identities=12% Similarity=0.062 Sum_probs=124.8
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHhhCCCCCChhhHHHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR-WILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
..-..+-.+|...|.+...+. +.+... .|.......+......-++.++-. ++.+.+.......+......-...
T Consensus 42 e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i 117 (299)
T KOG3081|consen 42 ELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAII 117 (299)
T ss_pred HHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHH
Confidence 333445566676776644332 333222 344444444444444344433333 333444433333232333333445
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----cCC
Q 020976 90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGK 165 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 165 (319)
|...+++++|++...... +......=...+.+..+.+-|.+.++.|.+. .+..+.+.|.+++.+ .+.
T Consensus 118 ~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 677777888777776521 2222333334555667777777777777764 245556655555544 345
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHH
Q 020976 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID-HAINVFE 244 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~ 244 (319)
+.+|.-+|++|.+. ..|+..+.+-...++...|++++|..+++...... ..++.+...++-+....|... ...+.+.
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 77777788777653 46677777777777777788888888887777664 345566655555555555543 3344555
Q ss_pred hhccC
Q 020976 245 SMEVK 249 (319)
Q Consensus 245 ~~~~~ 249 (319)
++...
T Consensus 267 QLk~~ 271 (299)
T KOG3081|consen 267 QLKLS 271 (299)
T ss_pred HHHhc
Confidence 55433
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=4.7e-05 Score=61.80 Aligned_cols=182 Identities=13% Similarity=0.096 Sum_probs=132.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHH
Q 020976 78 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (319)
|+...+...+.+......-..+..++.+..+.+ -...-|. ....+...|+++.|+..++.+... .|-|........
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYG-RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHH-HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 455556666655444433333333333332211 1122233 333556679999999999998886 345666667778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (319)
..+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.++..+++...... +.|...|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence 8899999999999999999986 444 5566778889999999999999999988764 77889999999999999998
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 237 DHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
.++..-.. ..|.-.|+++.|...+....+.
T Consensus 425 ~~a~~A~A--------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARA--------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHH--------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 88876554 3566789999999999888775
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=1e-05 Score=61.41 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=95.2
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI-LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
+......|..+|-...++..|-+.++++... .|...-|.. -...+.+.+.+..|+++...|.+. |+...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 5666788888888999999999999998774 355554432 234555778888888888777652 2222222222
Q ss_pred HHH--HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhcC
Q 020976 88 KCC--FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEG 164 (319)
Q Consensus 88 ~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 164 (319)
.+. ...+++..+..++++....| +..+.+...-...+.|+++.|.+-|+...+- |.. +...|+..+ +..+.|
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~ 192 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSR 192 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhh
Confidence 222 23455666666666554322 2333333333445666677777666666653 333 334454443 334556
Q ss_pred CHHHHHHHHHHHHHcCC
Q 020976 165 KLEAAYLLLDEMEKQGF 181 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~ 181 (319)
+++.|++...++.++|+
T Consensus 193 qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 193 QYASALKHISEIIERGI 209 (459)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 66667766666665543
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=4.3e-06 Score=73.20 Aligned_cols=136 Identities=11% Similarity=0.064 Sum_probs=116.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 020976 41 FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120 (319)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (319)
...++..+..|.......|..++|..+++.+.+..+. +......+...+.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4456888899999999999999999999999986332 56778888999999999999999999999885 556777788
Q ss_pred HHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
+..++.+.|++++|..+|+++... .+-+..++..+..++...|+.++|...|+...+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888899999999999999999984 3345788889999999999999999999988754
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.75 E-value=7e-05 Score=61.57 Aligned_cols=126 Identities=13% Similarity=0.036 Sum_probs=94.3
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHH
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 262 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 262 (319)
+|..++..-.+..-.+.|..+|.+..+.+..+ +..+.++++..++ .++.+-|.++|+--... ++.--...+..+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 46666777777777888888888888876666 5566666766554 57788888888865443 5555567777888
Q ss_pred ccCChhHHHHHHHHHHHcCCccC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 263 KAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
..++-..+..+|++.+..++.|+ ...|..+++--+.-|+...+.++-+++.
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88888889999999888766554 3688888888888899888888776654
No 120
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.3e-05 Score=68.95 Aligned_cols=278 Identities=15% Similarity=0.097 Sum_probs=142.4
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhC-C--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKH-G--------FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (319)
+...|..+...|.+..+++-|.-.+-.|... | -.|+ .+-....-.....|-+++|..+|.+.++
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 3456777777777777666665555444321 1 0111 1212222233455666777777766654
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHH----------hCC----
Q 020976 80 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV----------TDG---- 145 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~~~---- 145 (319)
|..|=+.|...|.|++|.++-+.-.+..+ ..||......+-..+|.+.|++.|++.. ...
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 23333445566777777766554322211 2344444555555677777777665431 110
Q ss_pred -----CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh
Q 020976 146 -----VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220 (319)
Q Consensus 146 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (319)
-..|...|.....-+...|+.+.|+.+|..... |..+++..|-.|+.++|-++-++ ..|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccH
Confidence 112444566666666677888888877766543 23344444445555555444332 1233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhccC--------------------------C-----------chhHHHHHHHHHc
Q 020976 221 EAYNCIVDRLGKDGKIDHAINVFESMEVK--------------------------D-----------SFTYSSMVHNLCK 263 (319)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------~-----------~~~~~~l~~~~~~ 263 (319)
...-.+.+.|...|++.+|..+|.+...- + +.-+...+..|-+
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 34444555555555555555555443210 0 0011223334555
Q ss_pred cCChhHHHHHHHH--------HHHc--CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 264 AKRLPSASKLLLS--------CLKS--GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 264 ~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
.|.+.+|+++.-+ ++.. ....|+...+.-.+-++...++++|..++-..++
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6666555543211 1122 2233666666666777777788888777655543
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=5.4e-06 Score=70.50 Aligned_cols=161 Identities=18% Similarity=0.223 Sum_probs=69.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
...+|.+|+.+++.+.... .-...|..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|+.|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 3444555555555444432 122334444555555555555555554321 13334455555555555555
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-C
Q 020976 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-D 250 (319)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 250 (319)
+-.+.. |+......|-.-..-.-+.|++.+|++++-.+. .|+ ..+.+|-+.|..+..+++..+-... -
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhh
Confidence 444332 222233333333333444455555544442221 122 1234444444444444444433222 2
Q ss_pred chhHHHHHHHHHccCChhHHHHHH
Q 020976 251 SFTYSSMVHNLCKAKRLPSASKLL 274 (319)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~ 274 (319)
..+...+..-|-..|+...|..-|
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHH
Confidence 223344444455555555555444
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=8.9e-06 Score=72.27 Aligned_cols=229 Identities=10% Similarity=0.003 Sum_probs=151.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA-ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35678888999998999999999999977764 3443 3344443455566665444433 22
Q ss_pred HHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCCh
Q 020976 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201 (319)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
+.......++..+..+...+... .-+..++..+..+|-+.|+.++|..+++++.+..+. +....+.+.-.|+.. +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence 33333333443344444455443 235557888999999999999999999999998744 788899999999988 99
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHH-----HhcCCHHHHHHHHHhhccC-----CchhHHHHHHHHHccCChhHHH
Q 020976 202 KGARLHLEYMNKIGFDSNLEAYNCIVDRL-----GKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSAS 271 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~ 271 (319)
++|..++.+....-+ +..-|+.+...+ ....+++.-..+.+.+... -..++-.+-..|-..++++++.
T Consensus 166 ~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 166 EKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 999999988876411 111122222111 1223334444444444332 3345666667788889999999
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHH
Q 020976 272 KLLLSCLKSGVRILKSAQKAVVDGLR 297 (319)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (319)
.+++.+++.... |.....-++.+|.
T Consensus 244 ~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 999999987544 6677788888875
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=2.4e-06 Score=59.37 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (319)
....+...+...|++++|.+.|+.+...+. .+...+..+..++...|++++|...+++..+.+ +.+...+..+..++.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 334444444555555555555555544321 244444455555555555555555555544443 333444444444555
Q ss_pred HcCchHHHHHHHHHHHh
Q 020976 127 KIGRLKEATDYMEQMVT 143 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~ 143 (319)
..|++++|...|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.65 E-value=2.8e-06 Score=58.97 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHH
Q 020976 80 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...++.....+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445555566666677777777776666554 4455666666666666677777777776665542 3345555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 020976 160 YCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~ 179 (319)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66677777777777666654
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=4.8e-05 Score=56.43 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=130.5
Q ss_pred CCcchHh-HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976 6 LTPCTAT-FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84 (319)
Q Consensus 6 ~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
+.|+..+ |..++-+....|+.+.|...++.+...- +-+...-..-...+-..|++++|.++++.+.+.+ +.|..++-
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH
Confidence 5566655 6778888889999999999999998763 3233333333333456799999999999999876 34677777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
.-+-..-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. |.+...|..+...+.-.|
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHh
Confidence 6666666778888888888888776 57899999999999999999999999999999863 345555666666655544
Q ss_pred ---CHHHHHHHHHHHHHcCC
Q 020976 165 ---KLEAAYLLLDEMEKQGF 181 (319)
Q Consensus 165 ---~~~~a~~~~~~~~~~~~ 181 (319)
+.+.+.++|.+..+...
T Consensus 203 g~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNP 222 (289)
T ss_pred hHHHHHHHHHHHHHHHHhCh
Confidence 46678888888887643
No 126
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.00017 Score=59.94 Aligned_cols=143 Identities=17% Similarity=-0.025 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHH--------HHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE--------YMNKIGFDSNLEAYNCIVDRLGKDGKI 236 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (319)
.+..+.+++...-+....-+.......+......|+++.|..++. .+.+.+..| .+...++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 466777777777665443334556667777888999999999998 555555444 4556667777777776
Q ss_pred HHHHHHHHhhccC----------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976 237 DHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306 (319)
Q Consensus 237 ~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 306 (319)
+.|..++.+.... -..++..++..-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 6666666654422 11233444444556799999999999999863 45888888899888765 455665
Q ss_pred HHHHH
Q 020976 307 KIQSK 311 (319)
Q Consensus 307 ~~~~~ 311 (319)
.+-++
T Consensus 512 ~l~k~ 516 (652)
T KOG2376|consen 512 SLSKK 516 (652)
T ss_pred HHhhc
Confidence 55433
No 127
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.6e-05 Score=61.85 Aligned_cols=190 Identities=11% Similarity=0.113 Sum_probs=102.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc-------hHHHHHHHHHHHhCCCccC-hhhHHHHH
Q 020976 86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR-------LKEATDYMEQMVTDGVQLD-IVSYNTLI 157 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 157 (319)
|+-.|.+.+++++|..+...+. |.++.-|..-.-.+...|+ ..-|.+.|+-.-.++...| +.-...+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred heeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 4444667777777776665543 2222222211112222222 3344455544444433322 23345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (319)
+++.-..++++.+-.+..+..-=..-|... ..+.++.+..|.+.+|+++|-.+....++.+..-...+.++|...++++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 666666677777777766655422323333 3466677777777777777766655443333333345566777777777
Q ss_pred HHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 238 HAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 238 ~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
.|++++-.+..+ .......+..-|.+.+.+--|.+.|+.+...
T Consensus 446 lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 446 LAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 777777766655 2223334445566666666666666665544
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=3.3e-06 Score=68.50 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (319)
.....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++++..+.. +.+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556666667788888888888888753 33 44456777777777788888888777653 44555555556667
Q ss_pred HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
.+.++++.|+.+.+++... .|.+..+|..|..+|...|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7888888888888888876 234556888888888888888888888877653
No 129
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00011 Score=65.03 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
.|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++..+.+....+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444444444444444443333211 1333444444444444444444444433333
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00014 Score=64.46 Aligned_cols=249 Identities=12% Similarity=0.082 Sum_probs=145.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (319)
+.+++|.+.-++.. .+..|..+..+-.+.|.+.+|.+-|-+. -|+..|..+++...+.|.|++..+++
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 55666666554442 3466777777777777777776665432 25566777777777777777777777
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhh--------------------------HHHHH
Q 020976 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS--------------------------YNTLI 157 (319)
Q Consensus 104 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------------------~~~l~ 157 (319)
....+..-.|.. =..|+-+|++.++..+.+.++. .|+... |..+.
T Consensus 1157 ~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La 1227 (1666)
T KOG0985|consen 1157 LMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLA 1227 (1666)
T ss_pred HHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHH
Confidence 666655434433 3466667777776665544331 233333 44444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (319)
..+...|++..|.+.-++. .+..||..+-.+|...+.+.-|. |-..++.....-...++..|...|-++
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 4444455555444433322 14455665555555554443331 222223334455677888999999999
Q ss_pred HHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc-CCc------cCHHHHHHHHHHHHhcCCHHHH
Q 020976 238 HAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVR------ILKSAQKAVVDGLRHSGCRREA 305 (319)
Q Consensus 238 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a 305 (319)
+.+.+++..... ....|+.+.-.|++- ++++..+.++-.... +++ -....|..++-.|.+-..+|.|
T Consensus 1297 ElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 999999876543 556777777767654 456666555544332 111 1234666666667666666665
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.56 E-value=1.5e-07 Score=47.71 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=22.7
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP 43 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (319)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777776666665
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.54 E-value=9e-06 Score=57.11 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=34.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFD--GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
..+...|++++|...|+.+......++ ......+...+...|++++|+..++..... ......+.....++.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 344444455555555544444321111 112222334444445555555554442221 1222333444444555555
Q ss_pred HHHHHHHHH
Q 020976 166 LEAAYLLLD 174 (319)
Q Consensus 166 ~~~a~~~~~ 174 (319)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555554444
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.53 E-value=1.8e-07 Score=47.85 Aligned_cols=33 Identities=33% Similarity=0.827 Sum_probs=24.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE 44 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 44 (319)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 134
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.53 E-value=4e-05 Score=65.46 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=45.9
Q ss_pred hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHH
Q 020976 196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL 275 (319)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (319)
.....|.+|..+++.+...+ ....-|..+.+.|...|+++.|.++|.+.. .++-.|..|.+.|+++.|.++-.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence 34445555555555544432 122334445555555555555555554322 23344455555555555555544
Q ss_pred HHHHcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976 276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306 (319)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 306 (319)
++. |.......|..-..-+-+.|++.+|.
T Consensus 816 e~~--~~e~t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 816 ECH--GPEATISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred Hhc--CchhHHHHHHHhHHhHHhhcchhhhh
Confidence 432 22323333333333334444444333
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=0.00021 Score=58.11 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=113.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC-hhhHHHHHHHHHhcCCHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLE 167 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 167 (319)
.+...|++++|+..++.+...- +-|+..+......+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 4557889999999999988773 556666667778899999999999999999986 344 666778889999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
+|..+++........ |+..|..|.++|...|+..++.... ...|...|+++.|...+....
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHH
Confidence 999999999887544 8889999999999999988776544 345566788888888877666
Q ss_pred cC
Q 020976 248 VK 249 (319)
Q Consensus 248 ~~ 249 (319)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 44
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.51 E-value=1.6e-05 Score=55.88 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=7.7
Q ss_pred HhccCChhHHHHHHHHHHh
Q 020976 195 LCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~ 213 (319)
+...|++++|...|+.+..
T Consensus 58 ~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHCCCHHHHHHHHHHHHh
Confidence 3333444444444444433
No 137
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=6e-05 Score=65.15 Aligned_cols=239 Identities=15% Similarity=0.081 Sum_probs=158.1
Q ss_pred hHhHHHHHH--HHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC---------CCCC
Q 020976 10 TATFNIMLN--GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS---------GHAP 78 (319)
Q Consensus 10 ~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 78 (319)
..|-..+++ .|...|+.+.|.+-.+.++ +...|..+.+.|.+.++.+-|.-.+-.|... .-.|
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 334444443 4677899999988777665 4578999999999988887776655554321 1122
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976 79 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
+ .+=....-.....|..++|+.+|.+-++. ..|=..|-..|.+++|.++-+.--.. . -..||.....
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAK 866 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHH
Confidence 2 22222333356789999999999988754 34445677789999998876643221 1 2345666677
Q ss_pred HHHhcCCHHHHHHHHHHHH----------HcC---------CCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 020976 159 LYCKEGKLEAAYLLLDEME----------KQG---------FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (319)
-+...++.+.|++.|++.. ... -..|...|..-.......|+.+.|+.+|.....
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 7777888888888886531 110 112444555555556667777777777766543
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
|-++++..+-.|+.++|-++-++-. |......+.+.|-..|++.+|...|.+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4566777788888888888877533 55566678888888888888888887653
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=1.2e-05 Score=65.40 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198 (319)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (319)
..|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++.+..+.... +..........+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 345556666788999999999988863 44 4455778888888888999999888865433 566667777778888
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
++++.|..+.+++.+.. |-+..+|..|..+|...|+++.|+..++.++
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999988863 4455789999999999999999998888765
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.42 E-value=5.7e-07 Score=45.89 Aligned_cols=33 Identities=52% Similarity=0.865 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (319)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.40 E-value=1.1e-05 Score=66.00 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhH
Q 020976 76 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153 (319)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
.+.+......+++.+....+++.+..++.++... ....-+.|..++++.|...|..+.++.+++.=..-|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555666666666666666666666666543 22223444556677777777777777777666666777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (319)
+.++..+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777776666655555555555555544443
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.39 E-value=6.7e-07 Score=45.28 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (319)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.37 E-value=0.0014 Score=57.53 Aligned_cols=222 Identities=15% Similarity=0.078 Sum_probs=114.5
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 020976 21 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG--LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (319)
...+++.+|..-...+.+. .||.. |...+.+ ..+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4456677777777666553 23322 2222222 34667777777777666655444 66677777777777777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC----------HHH
Q 020976 99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK----------LEA 168 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~ 168 (319)
|..+|++..+. -|+......+..+|.+.+++.+-.+.=-++.+. .+-....|-.+++...+.-. ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 77777777655 345555556666666666655433333333332 33344444444444433211 123
Q ss_pred HHHHHHHHHHcC-CCCcHHhHHHHHHHHhccCChhHHHHHHH-HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 169 AYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLHLE-YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 169 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
|.+.++.+.+.+ ..-+..-.......+...|++++|..++. ...+.-.+.+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444444444433 11122222222333345566777776662 3333222223333344455566666666666665555
Q ss_pred ccC
Q 020976 247 EVK 249 (319)
Q Consensus 247 ~~~ 249 (319)
...
T Consensus 253 l~k 255 (932)
T KOG2053|consen 253 LEK 255 (932)
T ss_pred HHh
Confidence 544
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.37 E-value=9.5e-06 Score=52.16 Aligned_cols=76 Identities=18% Similarity=0.367 Sum_probs=42.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAG--------RLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
.|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 566666666666555432 123344555555555555555555555
Q ss_pred HHHHH
Q 020976 87 MKCCF 91 (319)
Q Consensus 87 ~~~~~ 91 (319)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.37 E-value=0.00017 Score=55.28 Aligned_cols=177 Identities=14% Similarity=0.085 Sum_probs=105.8
Q ss_pred HHHHHHHcCchHHHHHHHHHHHhCCCccChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc
Q 020976 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY---NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197 (319)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (319)
....+...|++++|...|+++...- +-+.... -.++.++.+.+++++|...+++..+..+......+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556777888888887777642 1122221 34556777788888888888887766443333334344433321
Q ss_pred --c---------------CCh---hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHH
Q 020976 198 --A---------------GNI---KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM 257 (319)
Q Consensus 198 --~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 257 (319)
. .+. ..|...|+.+++. |=...-..+|...+..+...-...--.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 2333444444433 2223334455444444433322222255
Q ss_pred HHHHHccCChhHHHHHHHHHHHc--CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 258 VHNLCKAKRLPSASKLLLSCLKS--GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|..+...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 67788899999999999999875 333355677788899999999999998887654
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.0013 Score=57.70 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=150.5
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976 56 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKC--CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 133 (319)
...+++.+|.+-..++.+. .|+.. |...+.+ ..+.|..++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4568899999999998875 34543 3333333 56889999999999988877634 88899999999999999999
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC-C---------hhH
Q 020976 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-N---------IKG 203 (319)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 203 (319)
|..+|++.... .|+......+..+|.+.+.+.+-.+.--++-+. .+-....|.++++.....- . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999885 467777788888898888876654444444432 2335566666666654332 1 123
Q ss_pred HHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHh-hcc----CCchhHHHHHHHHHccCChhHHHHHHHHH
Q 020976 204 ARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFES-MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSC 277 (319)
Q Consensus 204 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (319)
|.+.++.+.+.+ ---+..=.......+...|++++|.+++.. ..+ .+...-+.-+..+...+++.+..++..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555566666543 111112222233445678899999999842 222 24555556677788889999999999888
Q ss_pred HHcCC
Q 020976 278 LKSGV 282 (319)
Q Consensus 278 ~~~~~ 282 (319)
...|.
T Consensus 253 l~k~~ 257 (932)
T KOG2053|consen 253 LEKGN 257 (932)
T ss_pred HHhCC
Confidence 88754
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.35 E-value=1e-05 Score=66.09 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=64.2
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKH--GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444455555555555555565555555443 11111233345666666666666666666665556666666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (319)
|..+.+.|++..|.++...|...+...++.++..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666555555444444444444444443
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.33 E-value=3.9e-05 Score=51.82 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=54.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CChhhHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTTIM 87 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 87 (319)
++..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455555666666666666666666543211 11234455666666666666666666666543211 1133455555
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 020976 88 KCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.++...|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5566666666666666666655
No 148
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.0004 Score=57.16 Aligned_cols=225 Identities=14% Similarity=0.066 Sum_probs=137.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH----
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK---- 88 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---- 88 (319)
...+....-+..++..|++-++...+.. -+..-++....+|...|.+.+.....+...+.|-. ...-|+.+-.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3455666667777888888887777754 35556667777788888777777766666554433 2333333333
Q ss_pred ---HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976 89 ---CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 89 ---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
++.+.++++.++..|.+.......|+ ...+....+++++..+...-.+... ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 44445667777777777554322221 2223334444444444433322111 1112222566777888
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
+..|+..|.+++...+. |...|....-+|.+.|.+..|..-.+...+.+ ++....|..=..++....+++.|.+.|.+
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877643 67778888888888888888877777766653 34445555555556666678888888887
Q ss_pred hccCCch
Q 020976 246 MEVKDSF 252 (319)
Q Consensus 246 ~~~~~~~ 252 (319)
....|+.
T Consensus 452 ale~dp~ 458 (539)
T KOG0548|consen 452 ALELDPS 458 (539)
T ss_pred HHhcCch
Confidence 7766543
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.25 E-value=0.00016 Score=57.02 Aligned_cols=204 Identities=17% Similarity=0.199 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC--c
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKR----KGYTFD--G 115 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~ 115 (319)
.|......|...+++++|.+.|.+.... +-+. -...|.....++.+. ++++|.+.+++... .| .++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 3444555555566666666666555321 1000 112233333333332 55555555555432 22 111 1
Q ss_pred ccHHHHHHHHHHc-CchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----Cc
Q 020976 116 FGYCTVIAAFVKI-GRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-----CD 184 (319)
Q Consensus 116 ~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 184 (319)
..+..+...|... |+++.|.+.|++..+. +.+ .-..++..+...+.+.|++++|.++|++....... ++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 2333444445454 6666666666655432 110 01233455556666666677776666666543221 11
Q ss_pred HH-hHHHHHHHHhccCChhHHHHHHHHHHhcC--CCCC--hhhHHHHHHHHHh--cCCHHHHHHHHHhhccCCch
Q 020976 185 KY-THTILIDGLCKAGNIKGARLHLEYMNKIG--FDSN--LEAYNCIVDRLGK--DGKIDHAINVFESMEVKDSF 252 (319)
Q Consensus 185 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~ 252 (319)
.. .|...+-++...||...|...+++..... +..+ ......|+.++-. ...++.+..-|+.+...|+.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 11 22223334445566666666666665431 1111 2333444444432 22355555555555444433
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=7.9e-05 Score=50.29 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCcccHHHHH
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTVI 122 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll 122 (319)
++..+...+.+.|++++|.+.|+.+...... .....+..+..++.+.|+++.|.+.++.+....- +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3344445555556666666666555543211 0123444455555555666666666655554310 11123344444
Q ss_pred HHHHHcCchHHHHHHHHHHHhC
Q 020976 123 AAFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.++.+.|+.++|...++++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.23 E-value=0.00016 Score=50.21 Aligned_cols=98 Identities=9% Similarity=0.030 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (319)
....-.+...+...|++++|.++|+-+....+. +..-|-.|.-++-..|++++|+..|......+ +-|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 344445555666777888888887777765433 56666677777777777888888777777765 4567777777777
Q ss_pred HHHcCchHHHHHHHHHHHhC
Q 020976 125 FVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (319)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766653
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.22 E-value=4.4e-05 Score=48.94 Aligned_cols=94 Identities=18% Similarity=0.096 Sum_probs=52.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
+..+...+...|++++|...++...+... .+...+..+...+...+++++|.+.++........ +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 44455555666666666666666655422 23345555566666666666666666665554322 33455555555666
Q ss_pred cCChhHHHHHHHHHHh
Q 020976 93 NRKYKLGLEILSAMKR 108 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~ 108 (319)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.21 E-value=3.5e-05 Score=60.52 Aligned_cols=142 Identities=17% Similarity=0.078 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH-HhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 020976 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG-LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 229 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (319)
.+|..++....+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4678888888888889999999999885432 244445444444 33356777799999998876 46677888888888
Q ss_pred HHhcCCHHHHHHHHHhhccC------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976 230 LGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296 (319)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (319)
+...|+.+.|+.+|++.... ....|...+..=.+.|+.+.+.++.+++.+. .|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 88999999999999987755 2347888888888889999888888888775 34444444444433
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.21 E-value=4.4e-05 Score=48.92 Aligned_cols=20 Identities=15% Similarity=-0.067 Sum_probs=8.0
Q ss_pred HHHHhcCChhHHHHHHHHHh
Q 020976 53 KGLCKAGRLRTARWILKELG 72 (319)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~ 72 (319)
..+...|++++|...+++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~ 27 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKAL 27 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHH
Confidence 33333444444444444433
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.21 E-value=2.9e-05 Score=50.02 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=13.5
Q ss_pred CChhHHHHHHHHHHhCCC-CCCcccHHHHHHHH
Q 020976 94 RKYKLGLEILSAMKRKGY-TFDGFGYCTVIAAF 125 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~ 125 (319)
+++.....+|+.+++.|+ .|+..+|+.++.+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si 71 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSI 71 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 444444444444444444 34444444444433
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.20 E-value=3.6e-06 Score=52.92 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=45.1
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976 23 NRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..++++ ...+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46667777777776664331 2334444466667777777777777766 22111 123344444666667777777776
Q ss_pred HHHH
Q 020976 102 ILSA 105 (319)
Q Consensus 102 ~~~~ 105 (319)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.19 E-value=2.7e-06 Score=41.91 Aligned_cols=29 Identities=31% Similarity=0.700 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHG 40 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 40 (319)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.18 E-value=2.2e-06 Score=42.24 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976 288 AQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317 (319)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i 317 (319)
+|+.++++|++.|++++|.++|++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777776654
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.18 E-value=0.00018 Score=52.14 Aligned_cols=83 Identities=16% Similarity=-0.015 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44444444555555555555555543322211 2344445555555555555555555555432 22233344444444
Q ss_pred HhcCCH
Q 020976 231 GKDGKI 236 (319)
Q Consensus 231 ~~~~~~ 236 (319)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.17 E-value=0.0014 Score=50.36 Aligned_cols=183 Identities=11% Similarity=0.046 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT---YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (319)
+...+-.....+...|++++|.+.|+++....+.+ ... .-.+..++.+.+++++|...+++..+....-....+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444445555677899999999999998854332 222 24566788899999999999999887632212223333
Q ss_pred HHHHHHH--c---------------Cch---HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 020976 121 VIAAFVK--I---------------GRL---KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180 (319)
Q Consensus 121 ll~~~~~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (319)
.+.+.+. . .|. .+|+..|+++++. -|++ .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 3433321 1 112 3455666666654 2332 2233444433333321
Q ss_pred CCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
.-. .-..+.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+
T Consensus 174 --la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 001 1124556677777777777777777765 33344566667777788888888777766543
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.14 E-value=0.00012 Score=50.85 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=84.8
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
....-.+...+...|++++|.++|+.+....+. +..-|-.|..++-..|++++|+..|.......+. |+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 344556677788899999999999999886544 6777888889999999999999999999987654 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 020976 90 CFRNRKYKLGLEILSAMKRKG 110 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~ 110 (319)
+...|+.+.|.+.|+......
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999887653
No 162
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=0.0012 Score=58.66 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=145.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976 95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 174 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (319)
+...++..|-+..+.. +.-...|..|...|....+...|.+.|+...+.. ..+..........|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3556666665555543 2234578889999988889999999999988863 3466778888999999999999998843
Q ss_pred HHHHcCC-CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchh
Q 020976 175 EMEKQGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT 253 (319)
Q Consensus 175 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (319)
..-+... ..-...|....-.|.+.++..++..-|+...+.. |.|...|..+..+|...|++..|.++|.++...+|..
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 3322211 1111223334555678888999999998888765 6678999999999999999999999998887665543
Q ss_pred -HHHH--HHHHHccCChhHHHHHHHHHHHc------CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 254 -YSSM--VHNLCKAKRLPSASKLLLSCLKS------GVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 254 -~~~l--~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
|... ....+..|.+.+|+..+...... +..--..++......+...|-..+|..++++-
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3322 22345678899998888776543 11112234444444445556556666665553
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=0.00011 Score=57.72 Aligned_cols=130 Identities=8% Similarity=0.004 Sum_probs=71.9
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG-LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
.+|..+|...-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566666666666667777777777664321 133344333333 22245555577777666654 33356666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 90 CFRNRKYKLGLEILSAMKRKGYTFDG---FGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
+...++.+.|..+|++.... ++++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777666644 22222 3556666665666666666666666555
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=4.7e-06 Score=52.36 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=37.1
Q ss_pred CChhHHHHHHHHHHhCCCC-CCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976 94 RKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. ...+ +.+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555566666555554210 1223333355555566666666666655 2111 11222333345555666666666655
Q ss_pred HHH
Q 020976 173 LDE 175 (319)
Q Consensus 173 ~~~ 175 (319)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=0.00017 Score=58.79 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=78.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
-...+...|++++|++.|++..+.... +...|..+..+|...|++++|...++++..... .+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 345677789999999999999887543 678888888999999999999999999988643 267788888899999999
Q ss_pred hhHHHHHHHHHHhCC
Q 020976 96 YKLGLEILSAMKRKG 110 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~ 110 (319)
+++|+..|++..+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988764
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.11 E-value=0.00028 Score=51.17 Aligned_cols=115 Identities=15% Similarity=0.073 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (319)
...+..+...+...|++++|...|++.......+. ...+..+..++.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 33455555556666666666666666654322221 2455555566666666666666666655542 22344444445
Q ss_pred HHHHHcCc--------------hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976 123 AAFVKIGR--------------LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164 (319)
Q Consensus 123 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
..+...|+ +++|.+++++....+ |+ .+..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcC
Confidence 55555444 567777887776642 22 2445555554444
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.11 E-value=0.00022 Score=51.56 Aligned_cols=62 Identities=13% Similarity=-0.138 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
+..+...+...|++++|...|++.......| ...++..+...+...|++++|...++.....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444555555555555555554332221 1224445555555555555555555555543
No 168
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.07 E-value=0.0044 Score=51.51 Aligned_cols=174 Identities=11% Similarity=0.040 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHcCchHHHHHHHH
Q 020976 61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYME 139 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 139 (319)
.+.....++++...-..--.-+|..+++...+..-+..|..+|.+..+.+..+ +....++++..++ .+|..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55666666666653222223456677777777777788888888888776555 5556666666555 467778888887
Q ss_pred HHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhc---
Q 020976 140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKI--- 214 (319)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 214 (319)
--... ...++.--...+..+...++-..+..+|+.....++.|+ ...|..++..=..-|+...+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 65554 222333334566677777888888888888877755444 357888888777788888777777665543
Q ss_pred CCCCChhhHHHHHHHHHhcCCH
Q 020976 215 GFDSNLEAYNCIVDRLGKDGKI 236 (319)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~ 236 (319)
...+....-..+++.|.-.+..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 0122223334445555544443
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.07 E-value=0.00028 Score=50.97 Aligned_cols=114 Identities=13% Similarity=-0.021 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHH
Q 020976 26 TDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP--NAITYTTIMKCCFRNRKYKLGLEI 102 (319)
Q Consensus 26 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 102 (319)
+..+...+..+. ..+..-....|..+...+...|++++|...|++.......+ ...++..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444442 22222235556667777777788888888888776543222 234677777778888888888888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHH-------HcCchHHHHHHHHH
Q 020976 103 LSAMKRKGYTFDGFGYCTVIAAFV-------KIGRLKEATDYMEQ 140 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~~~a~~~~~~ 140 (319)
+++..... +....++..+...+. ..|+++.|+..+++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 87777653 333445555555555 66777655555544
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.07 E-value=0.00021 Score=58.20 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=79.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc
Q 020976 51 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 130 (319)
-...+...|+++.|.+.|++..+.... +...|..+..++...|++++|+..++++.+.. +.+...|..+..++...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345566889999999999999986543 67888889999999999999999999998875 5567788888999999999
Q ss_pred hHHHHHHHHHHHhC
Q 020976 131 LKEATDYMEQMVTD 144 (319)
Q Consensus 131 ~~~a~~~~~~~~~~ 144 (319)
+++|+..|++....
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999885
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.06 E-value=0.0036 Score=49.95 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=74.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCC
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKR 266 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (319)
+.+.-+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++..++... .++|.-|..++.+|...|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 44455566666777777776655442 36777788888888888888877776553 4577888888888888888
Q ss_pred hhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
..+|..+..+ ++ +..-+..|.++|++.+|.+..-+
T Consensus 253 ~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888777765 12 13445666777777777655433
No 172
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.01 E-value=0.00075 Score=59.87 Aligned_cols=182 Identities=11% Similarity=0.024 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 020976 26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105 (319)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (319)
...|+..|-+..+..+. =...|..|...|+...+...|.+.|++..+.... +...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55555555554443221 2457788888888877888899999888875433 677888888899999999999888433
Q ss_pred HHhCC-CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 020976 106 MKRKG-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184 (319)
Q Consensus 106 ~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (319)
.-+.. ...-...|....-.|...++..++...|+...... |.|...|..+.++|.+.|++..|.++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 33221 01112223334445667788888888888887763 457788888999999999999999999888764 333
Q ss_pred HHhHHHH--HHHHhccCChhHHHHHHHHHHh
Q 020976 185 KYTHTIL--IDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 185 ~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
. +|... ...-+..|.+.++...+..+..
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 22222 2234567888888888877654
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.01 E-value=0.00097 Score=49.76 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=85.7
Q ss_pred HHHHHcCchHHHHHHHHHHHhCC--CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc--
Q 020976 123 AAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-- 198 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 198 (319)
..+...|++.+|...|+.+...- -+-.....-.++.++.+.|+++.|...++...+.-+......+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 34455666666666666666541 11112233445566666667777766666666543322222222222222111
Q ss_pred -----------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCCh
Q 020976 199 -----------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRL 267 (319)
Q Consensus 199 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (319)
+...+|...|+ .++.-|=......+|...+..+...-...--.+...|.+.|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred CccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 11223333333 3334444444455555555544433222223356778899999
Q ss_pred hHHHHHHHHHHHc--CCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976 268 PSASKLLLSCLKS--GVRILKSAQKAVVDGLRHSGCRREAK 306 (319)
Q Consensus 268 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~ 306 (319)
..|..-++.+++. +.+........++.+|.+.|..+.|.
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999998876 11112345677888999999888554
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.99 E-value=0.00089 Score=57.19 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=93.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhc--------CChhHHHHHHH
Q 020976 39 HGFVPELVTYNILIKGLCKAG-----RLRTARWILKELGDSGHAPN-AITYTTIMKCCFRN--------RKYKLGLEILS 104 (319)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~ 104 (319)
...+.|...|...+++..... +.+.|..+|++..+. .|+ ...|..+..++... .++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 334567788877777654432 266888888888875 343 44454443333221 12334444444
Q ss_pred HHHhC-CCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 020976 105 AMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181 (319)
Q Consensus 105 ~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (319)
+.... ..+.++..|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....++
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43332 124455677777666777899999999999998864 5788899999999999999999999999887643
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.0009 Score=44.79 Aligned_cols=56 Identities=20% Similarity=0.060 Sum_probs=24.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
.++-..|+.++|+.+|++....|+..+ ...+..+...+...|++++|..+++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444455555555555444443322 12333344444444555555555544443
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.92 E-value=0.0057 Score=52.07 Aligned_cols=249 Identities=14% Similarity=0.114 Sum_probs=130.9
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHH---------HHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHhhC
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRM---------FRGLQKHGFVPELVTYNILIKGLCKAGRLR--TARWILKELGDS 74 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~ 74 (319)
+.|....+.+-+..|...|.+++|.++ |+.+-.. ..+.-.++..=.+|.+.++.. +...-+++++++
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 456666677777788888888888754 2222111 112334455555666655533 334445666777
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH------------HcCchHHHHHHHHHHH
Q 020976 75 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV------------KIGRLKEATDYMEQMV 142 (319)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~------------~~~~~~~a~~~~~~~~ 142 (319)
|-.|+... +...++-.|.+.+|.++|.+- |.. +..+..|. ..|+.++-..+.++-.
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 77777654 334466678888888877643 211 12233333 3333333333322211
Q ss_pred hCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH------HHHcCCC---CcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE------MEKQGFE---CDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
+. .-+..--.+....+...|+.++|..+.-+ +.+-+.+ .+..+...+...+-+...+..|-++|..|-.
T Consensus 698 ~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD 775 (1081)
T KOG1538|consen 698 DW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD 775 (1081)
T ss_pred HH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc
Confidence 10 01111112344555667777777655421 1111111 1333444455555556666777777766543
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHH-------------HHHHHccCChhHHHHHHHHHHH
Q 020976 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM-------------VHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
..++++.....+++++|..+-++.++--+.+|... -.+|.+.|+..+|..+++++-.
T Consensus 776 ---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 ---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 24567777788888888888887765533333333 3345555555555555555543
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.92 E-value=0.00065 Score=53.60 Aligned_cols=161 Identities=15% Similarity=0.114 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCc--HH
Q 020976 117 GYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFECD--KY 186 (319)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~ 186 (319)
.|......|...+++++|...|.+.... +-+. -...|.....+|.+. ++++|.+.+++..+. .-.|+ ..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3555555666667777777777665432 1111 112333444444333 667777666665431 11222 22
Q ss_pred hHHHHHHHHhcc-CChhHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhccC----Cc----
Q 020976 187 THTILIDGLCKA-GNIKGARLHLEYMNKI----GFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS---- 251 (319)
Q Consensus 187 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---- 251 (319)
.+..+...|... |+++.|...|++..+. + .+. ...+..+...+.+.|++++|.++|+++... +.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 455555666665 6666666666665443 2 111 233445555566666666666666654322 00
Q ss_pred --hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 252 --FTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 252 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
..+-..+-++...|++..|...+++...
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1122223344445666666666665543
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.91 E-value=0.0022 Score=54.90 Aligned_cols=146 Identities=10% Similarity=0.029 Sum_probs=102.9
Q ss_pred CCCCCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc--------CchHHHHHHHHH
Q 020976 74 SGHAPNAITYTTIMKCCFRNR-----KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI--------GRLKEATDYMEQ 140 (319)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~ 140 (319)
...+.+...|..++++..... +...|..+|++..+.. +-....+..+..++... .+...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345668889998888755432 3778999999999874 33344555544444322 123344555554
Q ss_pred HHhC-CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 020976 141 MVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219 (319)
Q Consensus 141 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (319)
.... ..+.+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|...+++.... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 4332 233455778877777778899999999999999874 67889999999999999999999999998875 455
Q ss_pred hhhHH
Q 020976 220 LEAYN 224 (319)
Q Consensus 220 ~~~~~ 224 (319)
..+|.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 55543
No 179
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.89 E-value=0.00027 Score=51.55 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----------------CChhHHHHH
Q 020976 44 ELVTYNILIKGLCKA-----GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN----------------RKYKLGLEI 102 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 102 (319)
+-.+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 555666666655543 44555556666666666666666676666654331 134567788
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCc
Q 020976 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGR 130 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 130 (319)
+++|...|+-||..++..++..+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888887776554
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.88 E-value=7e-05 Score=44.79 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=36.5
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976 21 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
.+.|++++|+++|+.+.+..+. +...+..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567777777777777665333 6666667777777777777777777777664
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.87 E-value=0.0001 Score=43.57 Aligned_cols=61 Identities=15% Similarity=-0.021 Sum_probs=44.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318 (319)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~ 318 (319)
+...+...|++++|.+.|+++++... -+...+..+..++...|++++|..+|+++.+....
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34567778888888888888877642 26677777788888888888888888877665543
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.84 E-value=0.0025 Score=42.71 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=21.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 91 FRNRKYKLGLEILSAMKRKGYTFD--GFGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.++++...
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444432221 12222333344444444444444444443
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.84 E-value=0.00037 Score=55.67 Aligned_cols=269 Identities=14% Similarity=0.085 Sum_probs=154.1
Q ss_pred hHhHHHHHH--HHhhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHH--hh--CCCC-C
Q 020976 10 TATFNIMLN--GLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKEL--GD--SGHA-P 78 (319)
Q Consensus 10 ~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~-~ 78 (319)
..++...+. -+++.|+...-+.+|+...+-|.. |. .+|..|.++|.-.+++++|+++...= .. .|-+ -
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 334444443 488999999999999999988754 43 45777888888889999998864321 11 1111 0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHH----hCCC-CCCcccHHHHHHHHHHcCc--------------------hHH
Q 020976 79 NAITYTTIMKCCFRNRKYKLGLEILSAMK----RKGY-TFDGFGYCTVIAAFVKIGR--------------------LKE 133 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~ll~~~~~~~~--------------------~~~ 133 (319)
...+-..|.+.+--.|.+++|+-...+-. +.|- ......+-.+...|...|. ++.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 12222333344444566666654332211 1110 1122334444555544332 233
Q ss_pred HHHHHHHHHh----CCC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CcHHhHHHHHHHHhccCChhH
Q 020976 134 ATDYMEQMVT----DGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEME----KQGFE-CDKYTHTILIDGLCKAGNIKG 203 (319)
Q Consensus 134 a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~ 203 (319)
|.++|.+=.+ .|- -.-...|..+...|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 4444433221 110 0122345566666666788888876654422 22211 123467777888888888888
Q ss_pred HHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCChhH
Q 020976 204 ARLHLEYMNKI----GF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPS 269 (319)
Q Consensus 204 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 269 (319)
|.+.|+..... |- .....+.-++...|.-..+++.|+..+.+-... ....+.++..+|...|..++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 88888765432 21 123345566777777777888888777653211 45677888888888888888
Q ss_pred HHHHHHHHHH
Q 020976 270 ASKLLLSCLK 279 (319)
Q Consensus 270 a~~~~~~~~~ 279 (319)
|+.+...-++
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 8877665443
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.84 E-value=0.00075 Score=49.37 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC
Q 020976 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (319)
+-+-|++++++|...|+-||..++..++..+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345567777777777777777777777777765553
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.82 E-value=0.0052 Score=43.83 Aligned_cols=130 Identities=16% Similarity=0.081 Sum_probs=80.8
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CChhhHHH
Q 020976 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SNLEAYNC 225 (319)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 225 (319)
.|++.....+..++.+.|+..+|...|.+...--...|......+.++....+++..+...++.+.+.... -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46666666777777778888888877777765445556666777777777777777777777777765310 11233445
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHH
Q 020976 226 IVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLS 276 (319)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (319)
+.+.+...|.+..|+.-|+..... ++..-......+.++|+.+++..-+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 566677777777777777665543 333333334445566655555443333
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.81 E-value=0.00059 Score=54.60 Aligned_cols=262 Identities=16% Similarity=0.072 Sum_probs=161.8
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHH--Hh--CCCC-CCcccHHHHHH
Q 020976 53 KGLCKAGRLRTARWILKELGDSGHAPNAI----TYTTIMKCCFRNRKYKLGLEILSAM--KR--KGYT-FDGFGYCTVIA 123 (319)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~ll~ 123 (319)
.-+++.|+......+|+...+.|-. |.. +|..|.++|.-.+++++|+++...= .. .|-+ -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3578999999999999999987754 443 4666777888888999998864321 11 1100 11223334455
Q ss_pred HHHHcCchHHHHHHHHHH----HhCCCc-cChhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 020976 124 AFVKIGRLKEATDYMEQM----VTDGVQ-LDIVSYNTLINLYCKEGK--------------------LEAAYLLLDEMEK 178 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 178 (319)
.+--.|.+++|+.+..+- .+.|-. .....+..+...|...|+ ++.|.++|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 555567777766543221 121111 123445556666655442 2334555543221
Q ss_pred ----cCC-CCcHHhHHHHHHHHhccCChhHHHHHHHHHH----hcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976 179 ----QGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMN----KIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248 (319)
Q Consensus 179 ----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (319)
.|- -.....|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.++....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 110 1122356666666677789999987765433 22322 2235677888899999999999998876432
Q ss_pred -------C--CchhHHHHHHHHHccCChhHHHHHHHHHHH----cC-CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 249 -------K--DSFTYSSMVHNLCKAKRLPSASKLLLSCLK----SG-VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 249 -------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
+ ...+..++...|.-..++++|+.++.+-+. .+ ..-....+.++..++...|..++|+.+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 334555677788888889999988766432 11 122456788899999999999999988876544
Q ss_pred h
Q 020976 315 A 315 (319)
Q Consensus 315 ~ 315 (319)
.
T Consensus 344 ~ 344 (639)
T KOG1130|consen 344 S 344 (639)
T ss_pred H
Confidence 3
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00046 Score=52.79 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=62.2
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHH
Q 020976 55 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 134 (319)
+.+.+++++|+..|.+.+...+. |++.|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 44666777777777777665322 56666666667777777777776666666553 33455666666777777777777
Q ss_pred HHHHHHHHhCCCccChhhHHHHHH
Q 020976 135 TDYMEQMVTDGVQLDIVSYNTLIN 158 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
++.|++.++. .|+-.+|-.=+.
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHHH
Confidence 7777666663 455555544333
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.76 E-value=0.00018 Score=43.12 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=36.4
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhh
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGD 73 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 73 (319)
+.+|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445556666666666666666666666554322 4555555666666666 46666666655544
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=0.00023 Score=42.52 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=22.2
Q ss_pred cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
.|++++|+++|+++.... +-+...+..+..+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444431 22334444444444444445544444444444
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.71 E-value=0.00023 Score=42.12 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=22.7
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 020976 19 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72 (319)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (319)
.+.+.|++++|++.|+.+.+.... +...+..+..++...|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444443211 34444444444444444444444444443
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.71 E-value=0.011 Score=44.23 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=23.0
Q ss_pred HHHHHhccCChhHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHH
Q 020976 191 LIDGLCKAGNIKGARLHLEYMNKI--GFDSNLEAYNCIVDRLGKDGKIDH 238 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 238 (319)
+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 445556666666666666666554 111112334445555555555553
No 192
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00076 Score=51.63 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=94.0
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 64 ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
....-++++..| .-+.+.+++++|+..|.+.++.. +-|+..|..-..+|.+.|.++.|++-.+..+.
T Consensus 77 ~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~ 143 (304)
T KOG0553|consen 77 DKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS 143 (304)
T ss_pred HHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 455555555544 33678899999999999999885 66888889999999999999999999988887
Q ss_pred CCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 020976 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195 (319)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
.. +-...+|..|..+|...|++++|.+.|++.++ +.|+-.+|..=+...
T Consensus 144 iD-p~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 144 ID-PHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred cC-hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 52 23467899999999999999999999999887 477777776666554
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=0.00022 Score=42.73 Aligned_cols=66 Identities=9% Similarity=-0.074 Sum_probs=52.4
Q ss_pred CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhh
Q 020976 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG-CRREAKKIQSKIRMAK 316 (319)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 316 (319)
++..|..+...+...|++++|+..|.+.++... .+...|..+..++.+.| ++++|++.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 356778888888889999999999998888643 26678888888888888 6899998888876543
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.013 Score=44.36 Aligned_cols=136 Identities=12% Similarity=-0.041 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH-----H
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI-----V 227 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~ 227 (319)
.+.++.++.-.+.+.-....+.+..+...+.++.....+++.-.+.||.+.|...|++..+..-..+..+.+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 45667777778889999999999998877778888899999999999999999999988765334444444333 3
Q ss_pred HHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHH
Q 020976 228 DRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 290 (319)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (319)
..|.-.+++..|...+.++... ++..-|.-.-+..-.|+...|++.+..|+.. .|.+.+-+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 4556678899999999887755 5555565555666678999999999999876 34443333
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0064 Score=46.90 Aligned_cols=101 Identities=10% Similarity=-0.042 Sum_probs=76.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC---chHHHHHHHHHHHhCCCccChhhHH
Q 020976 78 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG---RLKEATDYMEQMVTDGVQLDIVSYN 154 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (319)
-|...|-.|...|...|+++.|...|.+..+.. ++++..+..+..++.... ...++..+|+++.... +.++.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 378888888888888888888888888888764 556666666666655433 3467888888888763 44677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 020976 155 TLINLYCKEGKLEAAYLLLDEMEKQG 180 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (319)
.+...+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 78888888888888888888888764
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.005 Score=46.46 Aligned_cols=152 Identities=11% Similarity=0.067 Sum_probs=112.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (319)
...+..+++|++=.. ..-+.++..+.-.|.+.-....++++.+...+.++.....+++.-.+.||.+.|...|
T Consensus 163 ~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 163 LAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred cchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 334667777766443 3456677777788889999999999998877778888899999999999999999999
Q ss_pred HHHHhCCCCCCcccHHHHH-----HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 104 SAMKRKGYTFDGFGYCTVI-----AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 104 ~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
+...+..-..+..+.+.+. ..+.-.+++..|...+.++.... +.++..-|.-.-+..-.|+...|++.++.|.+
T Consensus 236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9877654455555555544 34555678888888888887763 33555556655566668899999999999998
Q ss_pred cCCCC
Q 020976 179 QGFEC 183 (319)
Q Consensus 179 ~~~~~ 183 (319)
..+.|
T Consensus 315 ~~P~~ 319 (366)
T KOG2796|consen 315 QDPRH 319 (366)
T ss_pred cCCcc
Confidence 74433
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.61 E-value=0.0033 Score=48.69 Aligned_cols=88 Identities=8% Similarity=-0.033 Sum_probs=37.3
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHcCch
Q 020976 56 CKAGRLRTARWILKELGDSGHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRL 131 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~ 131 (319)
.+.|++++|...|+.+....+... ...+..+..+|...|++++|...|+.+.+.. -+.....+-.+..++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334455555555555544321100 1234444444555555555555555554331 011122222233344445555
Q ss_pred HHHHHHHHHHHh
Q 020976 132 KEATDYMEQMVT 143 (319)
Q Consensus 132 ~~a~~~~~~~~~ 143 (319)
++|..+|+.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0051 Score=47.45 Aligned_cols=128 Identities=10% Similarity=0.033 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHH
Q 020976 26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEI 102 (319)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 102 (319)
.+....-++.-.+.++ -|...|-.|...|...|+++.|...|.+..+.. .+++..+..+..++.... +..++..+
T Consensus 138 ~~~l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3444444444444444 388999999999999999999999999988753 236666666666655443 46778899
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
++++...+ +-|..+...|...+...|++.+|...|+.|.+.. +|+ ..+..++.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~ie 268 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLIE 268 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHHH
Confidence 99998876 5677777788888999999999999999999873 333 33444443
No 199
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.043 Score=47.74 Aligned_cols=300 Identities=12% Similarity=0.080 Sum_probs=154.0
Q ss_pred CCCCCCCcchHhHH-----HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHh
Q 020976 1 MICGDLTPCTATFN-----IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL---RTARWILKELG 72 (319)
Q Consensus 1 M~~~g~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~ 72 (319)
|.+-|++.+..-|. .+++-+...+.+..|+++-..+...-.. ....|......+.+..+. +-+..+-+++.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 34567777776664 4566777888899999887776543222 256677777777766432 22333333333
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC----
Q 020976 73 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY----TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD---- 144 (319)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 144 (319)
.. . .....|..+.+-....|+++.|..+++.=...+. -.+..-+...+.-+...|+.+-...++-.+...
T Consensus 502 ~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s 579 (829)
T KOG2280|consen 502 AK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS 579 (829)
T ss_pred cc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 22 2 3455677777777788888888877654222210 112233445555666677777666666555432
Q ss_pred -------CCccChhhHHHHHHH--------HHhcCCHHHHHHHH--HHHH----HcCCCCcHHhHHHHHHHHhccCCh--
Q 020976 145 -------GVQLDIVSYNTLINL--------YCKEGKLEAAYLLL--DEME----KQGFECDKYTHTILIDGLCKAGNI-- 201 (319)
Q Consensus 145 -------~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~--~~~~----~~~~~~~~~~~~~l~~~~~~~~~~-- 201 (319)
..+.....|.-+++- +...++-.++...| +... ..+..|+ .......+.+....
T Consensus 580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~ 656 (829)
T KOG2280|consen 580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSF 656 (829)
T ss_pred HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhh
Confidence 011112222222220 01111111111111 1100 0112222 22333333333221
Q ss_pred --------hHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHH
Q 020976 202 --------KGARLHLEYMNKI-GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASK 272 (319)
Q Consensus 202 --------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 272 (319)
.+-..+.+.+... |......+.+--+.-+...|+..+|.++-.+..-++...|..-+.+++..+++++-.+
T Consensus 657 e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 657 EAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHH
Confidence 1112222222211 3233344555556666677777777777777777777777777777777777766665
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
+-+... ++.-|.-.+.+|.+.|+.++|.+++.++
T Consensus 737 fAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 737 FAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 554331 2344555666667777777776665543
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.02 Score=46.19 Aligned_cols=83 Identities=16% Similarity=0.037 Sum_probs=36.1
Q ss_pred ccCChhHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHH---HHHHHHccCChhHH
Q 020976 197 KAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS---MVHNLCKAKRLPSA 270 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a 270 (319)
+.|.+..|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--+.....|+..... -..++...+++++|
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554433 122233333334444445555555555554444443322111 12233344555555
Q ss_pred HHHHHHHHH
Q 020976 271 SKLLLSCLK 279 (319)
Q Consensus 271 ~~~~~~~~~ 279 (319)
.+-+++..+
T Consensus 341 V~d~~~a~q 349 (486)
T KOG0550|consen 341 VEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHh
Confidence 555555443
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.03 Score=48.41 Aligned_cols=187 Identities=11% Similarity=0.052 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-CCCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGD-SGHAP--------NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 113 (319)
|.+..|..+.......-.++.|...|-+... .|++. +...-..=+.+ --|.+++|.++|-.+.+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence 5667777777776666677777776665543 22210 00000111111 2366777777766655442
Q ss_pred CcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH---------------
Q 020976 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME--------------- 177 (319)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------- 177 (319)
..+..+.+.||+-.+.++++.-... .-..-...|+.+...+.....|++|.+.|..-.
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f 838 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELF 838 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhh
Confidence 2344455555555555444331110 000012334444444444444444444443211
Q ss_pred ------HcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976 178 ------KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249 (319)
Q Consensus 178 ------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (319)
...++-+....-.+..++.+.|.-++|.+.+-+- + .| ...+..|...+++.+|.++-++..-+
T Consensus 839 ~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 839 GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 0112234445556666666666666666554322 1 12 22345566667777777777665544
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.015 Score=41.62 Aligned_cols=132 Identities=16% Similarity=0.112 Sum_probs=93.0
Q ss_pred CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHHH
Q 020976 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTI 190 (319)
Q Consensus 112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 190 (319)
.|+...--.|..+....|+..+|...|++...--+..|....-.+.++....+++..|...++++.+... .-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5666666677788888888888888888877654555667777777888888888888888888776532 112334456
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
+.+.+.-.|.+.+|+..|+..... -|+...-......+.+.|+.+++..-+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 677788888888888888887764 46655555556667777876666554443
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.031 Score=45.20 Aligned_cols=88 Identities=16% Similarity=0.011 Sum_probs=53.2
Q ss_pred HhcCCHHHHHHHHHHHHHc---CCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976 161 CKEGKLEAAYLLLDEMEKQ---GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (319)
.+.|.+..|.+.|.+.+.. +..|+...|.....+..+.|+..+|+.-.+...+.+ +.-...+..-..++...++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777653 234455566666666777777777777777666532 111123333344555667777
Q ss_pred HHHHHHHhhccC
Q 020976 238 HAINVFESMEVK 249 (319)
Q Consensus 238 ~a~~~~~~~~~~ 249 (319)
+|.+-++.....
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 777777765543
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.47 E-value=0.038 Score=44.42 Aligned_cols=279 Identities=13% Similarity=0.049 Sum_probs=173.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCChhH
Q 020976 23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGL--CKAGRLRTARWILKELGDSGHAPNAIT--YTTIMKCCFRNRKYKL 98 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~ 98 (319)
.|+-..|.++-.+.... +..|..-+..++.+- .-.|+++.|.+-|+.|... |.... ...|.-...+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35556666655443322 223444444444433 3468888888888888762 22221 2233333446788888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhh--HHHHHHHHH---hcCCHHHHHHH
Q 020976 99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVS--YNTLINLYC---KEGKLEAAYLL 172 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~l~~~~~---~~~~~~~a~~~ 172 (319)
|..+-+.....- +.-...+...+...+..|+++.|+++++.-... -+.++..- -..|+.+-. -..+...|.+.
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 888777776553 334566778888888889999999988876653 22333321 122222211 12345555555
Q ss_pred HHHHHHcCCCCcHH-hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH--HH--HHHHhhc
Q 020976 173 LDEMEKQGFECDKY-THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH--AI--NVFESME 247 (319)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~--~~~~~~~ 247 (319)
-.+..+ +.||.. .-..-.+++.+.|+..++-.+++.+.+.. |.+..... ..+.+.|+... .. +-+..|.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcC
Confidence 444443 455543 23345667889999999999999999874 55444433 33456666322 22 2345566
Q ss_pred cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 020976 248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR-HSGCRREAKKIQSKIRM 314 (319)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 314 (319)
..+..+...+..+-...|++..|..--+...+ ..|....|..+.+.-. ..|+-.+++.++.+-.+
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 66888888888888899999888877766655 4678888888887654 45999999988876544
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=97.42 E-value=0.016 Score=40.72 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=52.2
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976 54 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 133 (319)
-+...|++++|..+|.-+...++. +..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 344566677777776666654332 45555555556666666666666666555443 2344445555666666666666
Q ss_pred HHHHHHHHHh
Q 020976 134 ATDYMEQMVT 143 (319)
Q Consensus 134 a~~~~~~~~~ 143 (319)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.0047 Score=47.89 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=23.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 161 CKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
.+.|++++|...|+.+.+.-+... ...+..+...|...|++++|...|+.+.+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334555555555555544322110 12334444444445555555555554443
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.38 E-value=0.0022 Score=45.13 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 141 (319)
.+...|++++|..+.+.+.... |.+...|..+|.++...|+...|.++|+++
T Consensus 71 ~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334444444444444444432 333444444444444444444444444433
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.38 E-value=0.0016 Score=45.77 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCcccH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-----RKGYTFDGFGY 118 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 118 (319)
.+...++..+...|+++.|.++++.+.... +.+...|..+|.++...|+...|.+.|+++. +.|+.|++.+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 466677777888888888888888888764 3377788888888888888888888888775 34777777553
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.37 E-value=0.055 Score=43.95 Aligned_cols=163 Identities=12% Similarity=-0.024 Sum_probs=91.8
Q ss_pred ccHHHHHHHHHHcCchHHHHHHHHHHHhCC---CccChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 020976 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDG---VQLDIVSYNTLINLYCK---EGKLEAAYLLLDEMEKQGFECDKYTHT 189 (319)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (319)
.+...++-+|....+++...++.+.+...- +.-....-....-++.+ .|+.++|++++..+......+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556777788888888888877641 11122222234445555 778888888888866555566777777
Q ss_pred HHHHHHhcc---------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH----HHHHHHH---Hhhc-c----
Q 020976 190 ILIDGLCKA---------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI----DHAINVF---ESME-V---- 248 (319)
Q Consensus 190 ~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~---~~~~-~---- 248 (319)
.+.+.|-.. ...++|...|.+.-+. .|+...-..++..+...|.. .+..++- ..+. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 777665211 1355666666655543 24433322233333333321 1222222 1111 1
Q ss_pred -C--CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 249 -K--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 249 -~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
+ +-.-+.+++.+..-.|+.++|.+..++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 4445667777888888888888888888876
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.31 E-value=0.0025 Score=38.60 Aligned_cols=56 Identities=13% Similarity=-0.010 Sum_probs=34.8
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
..|.+.+++++|+++++.+...++. +...+......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456666666666666666665333 5555666666666666666666666666654
No 211
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.28 E-value=0.059 Score=42.53 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=92.7
Q ss_pred HhhcCChHHHHHHHHHHHhCC--CCCCH------HHHHHHHHHHHhcC-ChhHHHHHHHHHhhC--------CCCCCh--
Q 020976 20 LCKNRYTDNALRMFRGLQKHG--FVPEL------VTYNILIKGLCKAG-RLRTARWILKELGDS--------GHAPNA-- 80 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~-- 80 (319)
..+.|+.+.|..++.+..... ..|+. ..|+.-...+ +.+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356899999999998886632 22332 1233333333 445 888887777765442 122332
Q ss_pred ---hhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHH
Q 020976 81 ---ITYTTIMKCCFRNRKYK---LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 154 (319)
Q Consensus 81 ---~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (319)
.++..++.++...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+.+.+.+.+|... +......+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHH
Confidence 34556667777666543 4555555554432 333455556666666678888888888888876 222334455
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHcCCCCcH
Q 020976 155 TLINLYCK--EGKLEAAYLLLDEMEKQGFECDK 185 (319)
Q Consensus 155 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 185 (319)
.++..+.. ......+...++.+....+.|+.
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 55555422 12334555666666544444444
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=97.26 E-value=0.011 Score=41.47 Aligned_cols=94 Identities=12% Similarity=-0.073 Sum_probs=77.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 020976 14 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93 (319)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (319)
-.....+-..|++++|..+|.-+.-.+.. +..-+..|..++-..+++++|...|......+.. |+..+-....++...
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 34455566799999999999998876554 6777788888888899999999999988765543 677777888999999
Q ss_pred CChhHHHHHHHHHHhC
Q 020976 94 RKYKLGLEILSAMKRK 109 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~ 109 (319)
|+.+.|...|+.....
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999988874
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.003 Score=38.25 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 54 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.|.+.+++++|.++++.+...++. +...+.....++.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555544322 4444444555555555555555555555544
No 214
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.23 E-value=0.055 Score=41.05 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=34.6
Q ss_pred HHcCchHHHHHHHHHHHhCC--CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 020976 126 VKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
.+.|++++|.+.|+.+...- -+-...+--.++.++.+.++++.|...+++..+.-+......|...+.++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 34566666666666665431 11122333344555566666666666666666543333333333334333
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.22 E-value=0.0095 Score=40.34 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=24.9
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHHHHH
Q 020976 76 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAA 124 (319)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~ 124 (319)
..|+..+..+++.+|+..+++..|+++++.+.+. +++.+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3455555555555555555555555555554432 344444455555443
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.21 E-value=0.075 Score=45.30 Aligned_cols=160 Identities=18% Similarity=0.113 Sum_probs=109.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcH-----HhHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCChhh
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDK-----YTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEA 222 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (319)
+..+++...=.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.+.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3445556666789999999998876542 22111 234444444443 45678899999999875 466555
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHhhccC-------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976 223 YNC-IVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294 (319)
Q Consensus 223 ~~~-l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (319)
|.. -.+.+...|++++|.+.|++.... ....+.-+...+.-.+++++|...|.++.+..-. +..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 543 345667899999999999976542 3445666777888899999999999999986332 4555555444
Q ss_pred -HHHhcCCH-------HHHHHHHHHHHhh
Q 020976 295 -GLRHSGCR-------REAKKIQSKIRMA 315 (319)
Q Consensus 295 -~~~~~g~~-------~~a~~~~~~~~~~ 315 (319)
++...|+. ++|.++|+++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 44668888 8888888887543
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.21 E-value=0.0015 Score=40.18 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHc----CC-ccC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKS----GV-RIL-KSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
.+++.+...|...|++++|+..|++.++. |. .|+ ..++..+..++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35667777777888888888877777643 21 122 46777888888889999999888887543
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.17 E-value=0.035 Score=45.86 Aligned_cols=66 Identities=12% Similarity=-0.031 Sum_probs=55.7
Q ss_pred CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976 7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS 74 (319)
Q Consensus 7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
+.+...|+.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467778999999999999999999999988864 442 35888999999999999999999998874
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.0012 Score=40.61 Aligned_cols=63 Identities=17% Similarity=0.090 Sum_probs=39.4
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKH----GFV-PE-LVTYNILIKGLCKAGRLRTARWILKELG 72 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (319)
..+|+.+...|...|++++|++.|++..+. |.. |+ ..++..+...+...|++++|.+.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677777777777777777777776532 111 22 4456666777777777777777776654
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.15 E-value=0.015 Score=39.35 Aligned_cols=86 Identities=6% Similarity=0.035 Sum_probs=70.7
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQK---------------HGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
|..++..+|.++++.|+.+....+++..=. ....|+..+..+++.+|+..+++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567899999999999999999999876421 12458899999999999999999999999999876
Q ss_pred -CCCCCChhhHHHHHHHHHhcC
Q 020976 74 -SGHAPNAITYTTIMKCCFRNR 94 (319)
Q Consensus 74 -~~~~~~~~~~~~l~~~~~~~~ 94 (319)
-+++.+..+|..|+.-+....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 456777888999887655443
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.084 Score=40.91 Aligned_cols=147 Identities=19% Similarity=0.191 Sum_probs=92.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976 54 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 133 (319)
.....|++..|..+|......... +...--.+..++...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455778888888888887765333 4566667778888888888888888876544211112222233455555556555
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHHhHHHHHHHHhccCChhHH
Q 020976 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECDKYTHTILIDGLCKAGNIKGA 204 (319)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 204 (319)
...+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.-.|.-+.+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 55555555543 336666667777788888888888877776654 333 555666677776666643333
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.09 E-value=0.11 Score=42.20 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhH
Q 020976 220 LEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTY 254 (319)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (319)
.-.+..++.+..-.|+.+.|.+..+++....+..|
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 33445566666666677777666666665544444
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.19 Score=44.03 Aligned_cols=285 Identities=15% Similarity=0.091 Sum_probs=153.0
Q ss_pred HhHHHHHHHHhhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC----CChhhHH
Q 020976 11 ATFNIMLNGLCKNRYT--DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA----PNAITYT 84 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 84 (319)
..|......+.+..+. +++++..++=...-.. ...+|..+.+.....|+++-|..+++.=...+.. .+..-+.
T Consensus 472 ~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~ 550 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSS 550 (829)
T ss_pred HHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHH
Confidence 4455555555555322 2223322222222122 4456666666666778888887776543332211 1233345
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-----------CCCCcccHHHHHH--------HHHHcCchHHHHHHH--HHHHh
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKG-----------YTFDGFGYCTVIA--------AFVKIGRLKEATDYM--EQMVT 143 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~ll~--------~~~~~~~~~~a~~~~--~~~~~ 143 (319)
..+.-+...|+.+....++-.+...- .+.....|.-+++ .+.+.++...+...| +....
T Consensus 551 ~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~ 630 (829)
T KOG2280|consen 551 LALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYA 630 (829)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhh
Confidence 55666677777777666665554321 1111112222221 111122222222211 11000
Q ss_pred C-CCccChhhHHHHHHHHHhcCCHH----------HHHHHHHHHHH-cCCCCcHHhHHHHHHHHhccCChhHHHHHHHHH
Q 020976 144 D-GVQLDIVSYNTLINLYCKEGKLE----------AAYLLLDEMEK-QGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211 (319)
Q Consensus 144 ~-~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
. .+.+-.........++.+..... +-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.
T Consensus 631 ~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F 710 (829)
T KOG2280|consen 631 AETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF 710 (829)
T ss_pred hhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc
Confidence 0 01111222233344444433311 11222222221 222223334555566667788888888877665
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHH
Q 020976 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291 (319)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (319)
. -||...|-.-+.+++..+++++.+++-+... .|.-|..++.+|.+.|+.++|.+++-+.. +.. -
T Consensus 711 k----ipdKr~~wLk~~aLa~~~kweeLekfAkskk--sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----e 775 (829)
T KOG2280|consen 711 K----IPDKRLWWLKLTALADIKKWEELEKFAKSKK--SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----E 775 (829)
T ss_pred C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC--CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----H
Confidence 4 5888888888899999999998888877554 47888899999999999999999886642 111 5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 020976 292 VVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~ 311 (319)
...+|.+.|++.+|.+..-+
T Consensus 776 kv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 776 KVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 67788888888888776543
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.12 Score=41.56 Aligned_cols=110 Identities=17% Similarity=0.102 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 020976 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
.+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+-.. +-++..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345556777788899988888876663 57999999999999999999998876432 23457899999999
Q ss_pred HhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHH
Q 020976 231 GKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 276 (319)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (319)
.+.|+..+|..+..++. +..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999998833 36677888999999999877554
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.04 E-value=0.046 Score=36.74 Aligned_cols=137 Identities=13% Similarity=0.129 Sum_probs=80.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCCHH
Q 020976 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE---AYNCIVDRLGKDGKID 237 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 237 (319)
.-.|..++..++..+...+. +..-++.+|--....-+-+-..++++.+-+. .|.. -...++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc--
Confidence 34678888888888877652 3344555554444444444444444444332 2221 22334444444433
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976 238 HAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 317 (319)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i 317 (319)
+.......+..+...|+-+...+++..+.+ +-.+++.....+..+|.+.|+..++.+++++.=+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334455567778889999998899988875 3467888899999999999999999999998877776
Q ss_pred c
Q 020976 318 S 318 (319)
Q Consensus 318 ~ 318 (319)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.043 Score=43.20 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHhccCChhHH
Q 020976 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK----YTHTILIDGLCKAGNIKGA 204 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 204 (319)
|+..+|-..++++.+. .|.|...+...=.++.-+|+.+.-...++++... ..||. .....+.-++...|-+++|
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444444444444443 3334444444444444455444444444444322 11111 1111122222344445555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
++.-++..+.+ +.|.-.-......+.-.|++.++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 54444444433 23333333444444444555555444443
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.24 Score=43.21 Aligned_cols=226 Identities=13% Similarity=0.115 Sum_probs=123.9
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC--------cccHHHHHHHHHHcCch
Q 020976 61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFD--------GFGYCTVIAAFVKIGRL 131 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~~~~~ll~~~~~~~~~ 131 (319)
.++|.++.++ .|.+..|..+.......-.++-|...|-+...- |++.- ...-.+=+.+ --|++
T Consensus 679 ledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~f 750 (1189)
T KOG2041|consen 679 LEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEF 750 (1189)
T ss_pred hHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcch
Confidence 4556555432 578888998888777777777777776655431 22111 1111111222 23889
Q ss_pred HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH----------------HHHcCCCCcHHhHHHHHHHH
Q 020976 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE----------------MEKQGFECDKYTHTILIDGL 195 (319)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~~~l~~~~ 195 (319)
++|++++-++.... ..+..+.+.|+|-...++++. |-+. ..+...|......|
T Consensus 751 eeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 751 EEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYY 819 (1189)
T ss_pred hHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 99999988776542 234455555555555544432 1110 11223344444455
Q ss_pred hccCChhHHHHHHH------HHHh--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCCh
Q 020976 196 CKAGNIKGARLHLE------YMNK--IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRL 267 (319)
Q Consensus 196 ~~~~~~~~a~~~~~------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (319)
...|+.+.-.+.+- .+.. ..++-+....-.+.+++.+.|.-++|.+.+-+...+. ..+..|...+++
T Consensus 820 ~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW 894 (1189)
T KOG2041|consen 820 SYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQW 894 (1189)
T ss_pred HhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHH
Confidence 55554443322221 1111 1245566777778888888888888888877665442 345566777777
Q ss_pred hHHHHHHHHHHHcCCccCHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 268 PSASKLLLSCLKSGVRILKSA--------------QKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
.+|.++.++..- |...+ ..-.|..+.++|..-.|.+++.+|-+
T Consensus 895 ~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 895 GEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 777777665421 11111 11234455667776666666666644
No 228
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.87 E-value=0.26 Score=42.65 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=114.1
Q ss_pred HHHHHHHhhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH-----HH
Q 020976 14 NIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT-----TI 86 (319)
Q Consensus 14 ~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 86 (319)
+..=.+|.+-.+.. +.+.-+++++++|-.|+... +...++-.|++.+|.++|.+--..+- -.+.|+ -+
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~ 676 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDY 676 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHH
Confidence 33334455444432 33334556777887787654 44566778888888888865322110 011111 12
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHH------HHHhCCCc---cChhhHHHHH
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME------QMVTDGVQ---LDIVSYNTLI 157 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~---~~~~~~~~l~ 157 (319)
.+-+...|+.++-..+.++-.+- ..+..--.+....+...|+.++|..+.- -+.+.+-+ .+..+...+.
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a 754 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCA 754 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHH
Confidence 23344455544443333322211 1111112234455566777777765432 11111111 2333444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh-----------hHHHH
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE-----------AYNCI 226 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l 226 (319)
.-+.+...+..|.++|..|-.. ..+++.....++|++|..+-+...+. .|+.. -|...
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred HHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHH
Confidence 5555667778888888877532 45677788899999999888776553 33321 12223
Q ss_pred HHHHHhcCCHHHHHHHHHhhcc
Q 020976 227 VDRLGKDGKIDHAINVFESMEV 248 (319)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~ 248 (319)
-.+|.+.|+-.+|.++++++..
T Consensus 824 qkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 824 QKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHhcchHHHHHHHHHhhh
Confidence 3455566666666666665543
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.80 E-value=0.18 Score=41.79 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=54.7
Q ss_pred CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI----VSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677888888999999999999999998885 3443 35888999999999999999999998875
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.072 Score=42.02 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=84.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh--H--HHHHHHHHhcCChhH
Q 020976 23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT--Y--TTIMKCCFRNRKYKL 98 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~~~~~~~ 98 (319)
.|++.+|-..++++.+. .+.|.-.+...=.+|...|+...-...++++... -.|+... | ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45556666666666654 3446666666666777777776666666666542 1223222 2 223334456677777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC---CCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD---GVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
|++.-++..+.+ +.|.....++...+-..|+..++.++..+-... +.-.-..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777766655 555555666666666677777777666554332 0001112222333344555777777777764
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.047 Score=44.10 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=53.3
Q ss_pred HHHhhcCChHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH
Q 020976 18 NGLCKNRYTDNALRMFRGLQKH-----GFVP---------ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 83 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (319)
..+.+.|++..|..-|++.... +..+ -..+++.+.-++.+.+++..|++..++.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4677888999988888875442 1111 12344555555566666666666666655543 2355555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 84 TTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
-.-.+++...|+++.|...|+++.+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 55555666666666666666666554
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.72 E-value=0.11 Score=36.17 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=7.7
Q ss_pred HHHHcCchHHHHHHHHHHHh
Q 020976 124 AFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~ 143 (319)
.+...+.......+++.+..
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~ 35 (140)
T smart00299 16 LFEKRNLLEELIPYLESALK 35 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHc
Confidence 33333333444444443333
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.61 E-value=0.29 Score=39.70 Aligned_cols=258 Identities=16% Similarity=0.155 Sum_probs=157.3
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976 47 TYNILIKGLC--KAGRLRTARWILKELGDSGHAPNAITYTTIMKCC--FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122 (319)
Q Consensus 47 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (319)
-|..|-.++. -.||-..|.+.-.+..+. +..|......++.+- .-.|+++.|.+-|+.|.... ....--...|.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLy 161 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLY 161 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHH
Confidence 3444444443 356777777776655432 334556666666543 34699999999999998531 11111122333
Q ss_pred HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHH--hHHHHHHHHh---
Q 020976 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKY--THTILIDGLC--- 196 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~--- 196 (319)
-..-+.|+.+.|..+-++....- +.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 33456789999988888877652 3345678889999999999999999999876543 344432 1222332211
Q ss_pred ccCChhHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHH
Q 020976 197 KAGNIKGARLHLEYMNKIGFDSNLEA-YNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL 275 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (319)
-..+...|...-.+..+ +.|+..- -..-..++.+.|+..++-.+++.+-+..+..--..+..+.+.|+ .+..-++
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlk 316 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLK 316 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHH
Confidence 12345566665555554 3455432 23345678999999999999998876644443333444455555 4444444
Q ss_pred HHHHc-CCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 276 SCLKS-GVRI-LKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 276 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
+..+. ..+| +......+.++-...|++..|+.--+.
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44322 2344 556777778888888988877654433
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.59 E-value=0.026 Score=43.23 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=24.4
Q ss_pred chHhHHHHHHHHhhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 020976 9 CTATFNIMLNGLCKN-----RYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 56 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 56 (319)
|-.+|-..+..+... +.++-....+..|.+.|+.-|..+|+.|++.+-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 444444444444432 233434444555566666666666666665543
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.56 E-value=0.42 Score=40.90 Aligned_cols=179 Identities=17% Similarity=0.100 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHh----cCChh
Q 020976 28 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA------ITYTTIMKCCFR----NRKYK 97 (319)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~ 97 (319)
-..-+|+-+... +|| .+..++....=.||-+.+++.+.+..+.+---.+ -.|+..+..+.. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 345566666664 444 4455777777788888888888887653211111 224444443333 34678
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHH-HHHHHHcCchHHHHHHHHHHHhCC--C-ccChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976 98 LGLEILSAMKRKGYTFDGFGYCTV-IAAFVKIGRLKEATDYMEQMVTDG--V-QLDIVSYNTLINLYCKEGKLEAAYLLL 173 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (319)
.|.++++.+.+. -|+...|... .+.+...|++++|++.|++..... . +.....+--+.-++.-..+|++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 888899888876 4565555433 355667899999999999765421 1 123344556677788889999999999
Q ss_pred HHHHHcCCCCcHHhHHHHHHH-HhccCCh-------hHHHHHHHHHHh
Q 020976 174 DEMEKQGFECDKYTHTILIDG-LCKAGNI-------KGARLHLEYMNK 213 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~~ 213 (319)
..+.+.+ ..+..+|..+..+ +...|+. ++|..++.++..
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9998753 3355555544444 3456666 888888887654
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.26 Score=38.37 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=24.4
Q ss_pred HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
...|+..+|...|+...... +-+...--.++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555554431 1123334444555555555555555555543
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.52 E-value=0.16 Score=42.85 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=85.4
Q ss_pred HHHHcCchHHHHHHHHHH-HhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976 124 AFVKIGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
...-.++++.+.+....- .-..+ +....+.+++.+.+.|-.+.|+.+..+-. .-.....+.|+.+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 344557777766665411 11112 23446777777777787777776654321 1122334567777
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 020976 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 282 (319)
.|.++.+. ..+...|..|.+...+.|+++.|.+.|.+... |..++-.|...|+.+...++.+.....|.
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 77665432 23566788888888888888888888877663 55566667777777776666666655542
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 283 RILKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
++....++.-.|+.++..+++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444455666666655544
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.074 Score=40.71 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=57.1
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC------CchhHHHHH
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMV 258 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~ 258 (319)
.|+.-+..+ +.|++..|...|...++.. -.-....+-.|..++...|+++.|..+|..+... -+..+-.+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455554443 5566777777777766652 1222345566677777777777777777665533 445566666
Q ss_pred HHHHccCChhHHHHHHHHHHHc
Q 020976 259 HNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
....+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666677777777777776654
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.36 E-value=0.12 Score=35.66 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHHhccCChhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc----hhHHHHHHHHHc
Q 020976 192 IDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCK 263 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~ 263 (319)
.....+.|++++|.+.|+.+...- -+-....-..++.+|.+.++++.|...+++..+.+| .-|.....+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 334456677888877777776651 122334556677777777777777777777664422 234444444443
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.19 Score=40.80 Aligned_cols=123 Identities=17% Similarity=0.100 Sum_probs=68.2
Q ss_pred HHHHHcCchHHHHHHHHHHHhC-----CCc---------cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 020976 123 AAFVKIGRLKEATDYMEQMVTD-----GVQ---------LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (319)
..+.+.|++..|..-|++.... +.+ .-..++..+.-++.+.+++..|++.-.+.+..+.. +....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHH
Confidence 3566777777777777665432 111 11234566666677777777777777766665433 55555
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHhhc
Q 020976 189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID-HAINVFESME 247 (319)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~ 247 (319)
..-..++...|+++.|+..|+.+.+.. |-|..+-+.++.+-.+..... ...++|..|.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666777777777777777776643 223333333443333333322 2345555444
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.34 E-value=0.11 Score=39.87 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC--CCCChhhHHHHH
Q 020976 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFE--CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIV 227 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 227 (319)
.|+.-+.. .+.|++..|...|...++..+. -....+..|..++...|++++|..+|..+.+.- .+.-+..+.-+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57666654 4567799999999988876432 123456678888889999999999998887651 122346777788
Q ss_pred HHHHhcCCHHHHHHHHHhhccC
Q 020976 228 DRLGKDGKIDHAINVFESMEVK 249 (319)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~ 249 (319)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888899999999999888765
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.34 E-value=0.91 Score=42.33 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=47.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchh---HHHHHHHHHcc
Q 020976 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT---YSSMVHNLCKA 264 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~ 264 (319)
|.+....+.....+++|.-.|+..-+ ...-+.+|..+|++.+|..+..++...-... -..|+.-+...
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence 33444444555666666665554322 1233566677777777777777666552222 25566666677
Q ss_pred CChhHHHHHHHHHH
Q 020976 265 KRLPSASKLLLSCL 278 (319)
Q Consensus 265 ~~~~~a~~~~~~~~ 278 (319)
+++-+|-+++.+..
T Consensus 1013 ~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYL 1026 (1265)
T ss_pred ccchhHHHHHHHHh
Confidence 77777766666554
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.33 E-value=0.49 Score=39.21 Aligned_cols=126 Identities=13% Similarity=0.189 Sum_probs=93.3
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHH
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 262 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 262 (319)
.|...+....+..-.+.|..+|.++.+.+ +.++..++++++..+ ..|+...|..+|+--... ++.--+..+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45666677777788899999999999887 567777888888765 467888899999864433 3444456677778
Q ss_pred ccCChhHHHHHHHHHHHcCCccC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 263 KAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
..++-+.|..+|+..... +.-+ ...|..+|+--..-|+...+..+-+++.+
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 889999999999966543 2222 46788899888899999887776666543
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.33 Score=36.65 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (319)
..|..-..+|....++++|...+.+..+- ...+...|+. ...++.|.-+.+++.+. +--...|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555555666666666666655555431 1212222211 11233344444444432 11223344555566
Q ss_pred HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CCcHHhHHHHHHHHhccCC
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GF--ECDKYTHTILIDGLCKAGN 200 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 200 (319)
...|.++.|-..+++.-+. ..+-++++|+++|++.... +- .--...+..+-+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 6666666655555544321 1233455555555554321 00 1112234445556666677
Q ss_pred hhHHHHHHHHHHhc----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhhccC-------CchhHHHHHHHHHccCChh
Q 020976 201 IKGARLHLEYMNKI----GFDSNL-EAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLP 268 (319)
Q Consensus 201 ~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~ 268 (319)
++++-..+.+-... .--++. ..+...|-.+.-..++..|..+++.-... +..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 77666555443211 111121 33445555566667777787777762211 5556666776663 45666
Q ss_pred HHHHHH
Q 020976 269 SASKLL 274 (319)
Q Consensus 269 ~a~~~~ 274 (319)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 555544
No 245
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.25 Score=35.14 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH--
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV-- 121 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 121 (319)
...|..-+. ++..+..++|+.-|..+.+.|...=+. ..-.........|+...|...|+++-... +.+....-+
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt--~~P~~~rd~AR 135 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT--SIPQIGRDLAR 135 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC--CCcchhhHHHH
Confidence 344444443 234455566666666665544331110 11111223345566666666666655442 222222111
Q ss_pred -H--HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 122 -I--AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 122 -l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
= -.+...|.++++....+-+...+-+.-...-..|.-+-.+.|++.+|.++|.++...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 123445666666665555555444444444455555556666666666666666543
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.25 E-value=0.025 Score=30.18 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=15.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKH 39 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 39 (319)
+|..+...|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555556666666666555554
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=96.24 E-value=0.57 Score=39.10 Aligned_cols=111 Identities=15% Similarity=0.000 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
..+|.++.++..+.+ +.|+.....+..+....++++.+...|++....+ +-...+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666666665 5566666666666667777777777887777652 22334455555555667778888777777
Q ss_pred HHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHH
Q 020976 176 MEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLE 209 (319)
Q Consensus 176 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (319)
..+..+.- -.......+..|+.. ..+.+..++-
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 66543211 112223333355443 3455555553
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.24 E-value=0.093 Score=40.81 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCcccHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-----KGYTFDGFGYC 119 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 119 (319)
..++..++..+...|+++.+.+.++++....+ -+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45677788888888888888888888877643 3777888888888888888888888877764 47777777666
Q ss_pred HHHHH
Q 020976 120 TVIAA 124 (319)
Q Consensus 120 ~ll~~ 124 (319)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66655
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.22 E-value=0.2 Score=33.71 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=24.6
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 020976 55 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (319)
.+..|+.+.|++.|.+....- +-....||.-..++--.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344455555555555444431 12344455555555445555555544444443
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.14 E-value=0.19 Score=42.43 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=71.6
Q ss_pred HHHhhcCChHHHHHHHHH--HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976 18 NGLCKNRYTDNALRMFRG--LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
....-.++++++.++.+. +.. .+ .....+.++..+-+.|-.+.|+++..+ +. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 334445666665555531 111 11 134456666666666666666655322 11 12233445566
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
++.|.++.++. .+...|..|.....+.|+++-|++.|.+..+ |..++-.|...|+.+...++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 66665544322 2445666666666666666666666655432 44455555566666555555555
Q ss_pred HHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHH
Q 020976 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (319)
....|- ++....++...|+.++..+++.
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 544431 2333333344455555554443
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.09 E-value=0.18 Score=33.94 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=58.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChh---hHHHHHHHHHhcC
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIV---SYNTLINLYCKEG 164 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~---~~~~l~~~~~~~~ 164 (319)
+.+..|+.+.|++.|.+....- +..+..||.-..++.-.|+.++|+.-+++..+. |.+ +.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 4566777777877777776653 556677777777777777777777777777664 222 222 2333334566677
Q ss_pred CHHHHHHHHHHHHHcC
Q 020976 165 KLEAAYLLLDEMEKQG 180 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~ 180 (319)
+-+.|..=|...-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777776666554
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.06 E-value=0.03 Score=29.84 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292 (319)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (319)
.++..+...|...|++++|.++|+++++... -|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence 4566777777778888888888887777532 244444443
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.02 E-value=0.29 Score=33.74 Aligned_cols=82 Identities=10% Similarity=-0.032 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
+-.-.....+.|++++|++.|+.+..+-+- -...+--.++.+|.+.++++.|...+++..+..+.-.-.-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 333445566778888888888888765211 234556677888888888888888888888754443334566666665
Q ss_pred HhcC
Q 020976 91 FRNR 94 (319)
Q Consensus 91 ~~~~ 94 (319)
+...
T Consensus 93 ~~~~ 96 (142)
T PF13512_consen 93 SYYE 96 (142)
T ss_pred HHHH
Confidence 5433
No 254
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.01 E-value=0.59 Score=37.18 Aligned_cols=128 Identities=13% Similarity=0.200 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCC-
Q 020976 26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCK--AG----RLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRK- 95 (319)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~- 95 (319)
+++.+++++.|.+.|.+-+..+|-+....... .. ...+|..+|+.|++..+- ++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666666776666555554442222222 11 244566666666654221 223333333322 2222
Q ss_pred ---hhHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHHcCc--hHHHHHHHHHHHhCCCccChhhHHH
Q 020976 96 ---YKLGLEILSAMKRKGYTFDGF--GYCTVIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNT 155 (319)
Q Consensus 96 ---~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
.+.+..+|+.+.+.|+..+.. ....++.......+ ...+..+++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 234455555555555443322 11111111111111 2345555555555555555444443
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.95 E-value=0.51 Score=36.00 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (319)
...|+.-+. -.+.|++++|.+.|+.+....+ +-...+.-.++.++.+.++++.|+...++....--......|..-|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 334444333 3356777777777777765321 1123445555566667777777777777666542222223344444
Q ss_pred HHHHHc-------CchHH---HHHHHHHHHhCCCc-----cChhh------------HHHHHHHHHhcCCHHHHHHHHHH
Q 020976 123 AAFVKI-------GRLKE---ATDYMEQMVTDGVQ-----LDIVS------------YNTLINLYCKEGKLEAAYLLLDE 175 (319)
Q Consensus 123 ~~~~~~-------~~~~~---a~~~~~~~~~~~~~-----~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
.+++.. .|... |..-|++++.. .| ||... =..+.+.|.+.|.+..|..-++.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 444432 22222 33333333332 11 11110 02234556666666666666666
Q ss_pred HHHcCCCCc---HHhHHHHHHHHhccCChhHHHHHHHHHH
Q 020976 176 MEKQGFECD---KYTHTILIDGLCKAGNIKGARLHLEYMN 212 (319)
Q Consensus 176 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+.
T Consensus 193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 6654 1111 2234455556666666666665544443
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.94 E-value=0.57 Score=37.66 Aligned_cols=54 Identities=7% Similarity=-0.092 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-----CCcHHhHHHHHHHHhccCChhHHHHHHH
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQGF-----ECDKYTHTILIDGLCKAGNIKGARLHLE 209 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (319)
+..++...+.++++++.|+...+-.. -.....+..+...|.+..|++++.-+..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 34444444555555555554432110 1112234444455555555555544443
No 257
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.92 E-value=0.39 Score=34.31 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
.+.++.+...+++|+...+..++..+.+.|++... .++.+.++-+|.......+-.+.. ....+.++--.|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 44555555667777777777777777777765443 344444555555544433332222 223333333333321
Q ss_pred -CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 215 -GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 215 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
+ ..+..+++.+...|++-+|.++.+.....+......++.+-.+.+|...-..+++-..+
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 13455666667777777777777665444444445555555555555544444444443
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.91 E-value=0.7 Score=37.19 Aligned_cols=227 Identities=14% Similarity=0.158 Sum_probs=131.2
Q ss_pred HhhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHhhCC-CCCChhhHHHHHHHHHh
Q 020976 20 LCKNRYTDNALRMFRGLQKH--GFVPELVTYNILIKGLCKAGRLRTARWIL----KELGDSG-HAPNAITYTTIMKCCFR 92 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~ 92 (319)
+....+.++|+..|.....+ +..--..+|..+..+.++.|.+++++..- +-..+.. -..-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888776543 11112346666777777888777765432 1111100 01123445556666666
Q ss_pred cCChhHHHHHHHHHHhC-CCCC---CcccHHHHHHHHHHcCchHHHHHHHHHHHhC-----CCccChhhHHHHHHHHHhc
Q 020976 93 NRKYKLGLEILSAMKRK-GYTF---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GVQLDIVSYNTLINLYCKE 163 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 163 (319)
.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+....- .......++..+.+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666655444332 2122 1122334556666777888888888877652 1112235678888888899
Q ss_pred CCHHHHHHHHHHHHH----cCCCCcHH------hHHHHHHHHhccCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHH
Q 020976 164 GKLEAAYLLLDEMEK----QGFECDKY------THTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNCIVD 228 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~----~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 228 (319)
.++++|.-+..+..+ .++. |.. ....+.-++...|....|.+.-++..+. |-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 999988776665432 2222 211 2233445566777777777777666543 3222 2344566778
Q ss_pred HHHhcCCHHHHHHHHHhhc
Q 020976 229 RLGKDGKIDHAINVFESME 247 (319)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~ 247 (319)
.|-..|+.+.|+.-++...
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 8888999888888777644
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.85 E-value=0.098 Score=40.27 Aligned_cols=87 Identities=11% Similarity=0.116 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------------ChhHHHHH
Q 020976 44 ELVTYNILIKGLCKA-----GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR----------------KYKLGLEI 102 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~~ 102 (319)
|-.+|...+..+... +.++-....++.|.+-|+..|..+|+.|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 566676666666543 456666667788888888888888888887654422 12345667
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCc
Q 020976 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGR 130 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 130 (319)
+++|...|+.||..+-..|++++.+.+-
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 7777777777777777777777666553
No 260
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.82 E-value=1.1 Score=38.59 Aligned_cols=129 Identities=8% Similarity=0.021 Sum_probs=63.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL-VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
.|+.++.---.....+.+..+++.++.. . |.. .-|......=.+.|..+.+.++|++-.. +++.+...|...+..+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k-y-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK-Y-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh-C-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 3444444444444445555555555543 1 232 2344444444555666666666666554 2444555555554443
Q ss_pred Hh-cCChhHHHHHHHHHHhC-CCC-CCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 91 FR-NRKYKLGLEILSAMKRK-GYT-FDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 91 ~~-~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
.. .|+.+...+.|+..... |.. .+...|...|..-...+++.....+++++.+
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 32 34455555555554432 211 1233455555555555566666666665554
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.6 Score=35.35 Aligned_cols=207 Identities=10% Similarity=0.043 Sum_probs=106.9
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
..|.....+|....++++|...+.+..+- ...|...|.. ...++.|.-+.+++... +--...|+.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34556666777777888887776665431 1212222211 12245555555555442 11233455555667
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC---C--CccChhhHHHHHHHHHhcCC
Q 020976 91 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD---G--VQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~ 165 (319)
...|.++.|-..+++.-+. ...-++++|++++++...- + ...-...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777766666665554321 1223444455555443321 0 01112334455566667777
Q ss_pred HHHHHHHHHHHHHc----CCCCcH-HhHHHHHHHHhccCChhHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCCHH
Q 020976 166 LEAAYLLLDEMEKQ----GFECDK-YTHTILIDGLCKAGNIKGARLHLEYMNKIG---FDSNLEAYNCIVDRLGKDGKID 237 (319)
Q Consensus 166 ~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 237 (319)
+++|-..+.+-... .-.++. ..|...|-.+....++..+...++.--+.+ -+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 77665555433211 111222 235555556666778888888887744331 123456667777766 457777
Q ss_pred HHHHHHH
Q 020976 238 HAINVFE 244 (319)
Q Consensus 238 ~a~~~~~ 244 (319)
++..++.
T Consensus 245 ~~~kvl~ 251 (308)
T KOG1585|consen 245 EIKKVLS 251 (308)
T ss_pred HHHHHHc
Confidence 7766654
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.76 E-value=0.4 Score=33.28 Aligned_cols=127 Identities=15% Similarity=0.112 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (319)
...++..+...+.......+++.+...+. .+...++.++..|++.+ ..+....+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 45677888888899999999999988764 57778899999998764 3444444432 1233445557788888
Q ss_pred cCCHHHHHHHHHhhccCCchhHHHHHHHHHcc-CChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 020976 233 DGKIDHAINVFESMEVKDSFTYSSMVHNLCKA-KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 298 (319)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (319)
.+.++++.-++.++.. +...+..+... ++++.|.+++.+ ..++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 8888888888887653 33344444444 788888888775 2266788888877654
No 263
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.60 E-value=1.1 Score=37.24 Aligned_cols=144 Identities=14% Similarity=0.212 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhH-HHHHHH
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY-NTLINL 159 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 159 (319)
.|...++...+..-++.|..+|-++.+.+ +.++...+++++..++ .|+...|..+|+--... -||...| +..+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 45556666666666777888888877776 5566777777776555 46777777777765543 2343333 445666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 020976 160 YCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 231 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (319)
+...++-+.|..+|+....+ +..+ ...|..+|..-..-|+...+..+-+++.+. -|...+.....+.|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 67777777788887755432 1112 346777777777777777777766666653 344434444444443
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.47 E-value=0.47 Score=32.12 Aligned_cols=141 Identities=14% Similarity=0.119 Sum_probs=74.3
Q ss_pred HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 020976 20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (319)
..-.|..++..++..+.... .+..-+|.++--....-+-+-..++++..-+. .|... .|+....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHH
Confidence 34457777777777776653 24555666665555555555555555554331 22221 1222222
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
...+-.+ ..+.......+..+...|.-+...+++.++... -.+++...-.+..+|.+.|+..++-+++.+.-+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2222111 112334455666777777777777777777653 3456667777788888888888888888887777
Q ss_pred CCC
Q 020976 180 GFE 182 (319)
Q Consensus 180 ~~~ 182 (319)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 654
No 265
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.44 E-value=0.38 Score=35.01 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKR 108 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (319)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788888888888888888888776533332 34556677777778888887777776654
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.43 E-value=0.23 Score=38.71 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=62.3
Q ss_pred cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcHHhHH
Q 020976 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGFECDKYTHT 189 (319)
Q Consensus 115 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 189 (319)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456777888888888888888888888763 55778888888888888888888888887764 57888877776
Q ss_pred HHHHHH
Q 020976 190 ILIDGL 195 (319)
Q Consensus 190 ~l~~~~ 195 (319)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666663
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.41 E-value=1.4 Score=37.20 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
..+..++.+.|+.++|.+.+++|.+..... .......++.++...+.+.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345555666677777777777766542221 233556666667777777777766666543
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=2.1 Score=38.58 Aligned_cols=53 Identities=9% Similarity=-0.068 Sum_probs=35.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
.-++..+.+..+++.+..+.+..-+ . ++..|..++..+.+.+..+.-.+...+
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~---~-~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGK---E-DPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCc---c-ChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 3456677778888888887776533 2 777888888888887755544443333
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.29 E-value=0.42 Score=34.78 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=65.9
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
..+..+...|.+.|+.+.|++.|.++.+....|. ...+-.+++.....+++..+...+.+....-..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4578899999999999999999999988654433 45677888999999999999999888765321211111111111
Q ss_pred -----HHHhcCChhHHHHHHHHH
Q 020976 89 -----CCFRNRKYKLGLEILSAM 106 (319)
Q Consensus 89 -----~~~~~~~~~~a~~~~~~~ 106 (319)
.+...+++..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 123456677766666544
No 270
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.27 E-value=0.72 Score=32.98 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=14.8
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
++.+.+.++.|+...+..++..+.+.|.+..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3333444455555555555555555554433
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.19 E-value=1.2 Score=35.19 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=58.9
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHH-------HHHHhcC-ChhHHHHHHHHHHhC----C----CCCC-----
Q 020976 56 CKAGRLRTARWILKELGDSGHAPNAITYTTIM-------KCCFRNR-KYKLGLEILSAMKRK----G----YTFD----- 114 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 114 (319)
.+.|+++.|...+.+........++.....+. ......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888776532122222222222 2223344 666666666554332 1 1111
Q ss_pred cccHHHHHHHHHHcCchH---HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 115 GFGYCTVIAAFVKIGRLK---EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 115 ~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
..++..++.+|...+..+ +|..+++.+... .+-.+.++-.-+..+.+.++.+.+.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 122334445555544433 344444444333 1112333444455555566666666666666654
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.10 E-value=0.081 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 020976 289 QKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
+..+...|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555544
No 273
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.44 Score=37.45 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=63.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHH
Q 020976 215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 288 (319)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (319)
|.+.+..+...++.......+++.+...+-+++.. ...+-...++.+. .-++++++.++..=+..|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 34445555555666556667777777777666533 1111122233222 3356678877777777888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 289 QKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
+..+++.+.+.+++.+|.++...|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888888777666543
No 274
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.09 E-value=0.58 Score=34.36 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=56.9
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHcCch
Q 020976 55 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK---GYTFDGFGYCTVIAAFVKIGRL 131 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~ 131 (319)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|...+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334454 678888888877665546666666665555 67888888888877653 2367788899999999999998
Q ss_pred HHHH
Q 020976 132 KEAT 135 (319)
Q Consensus 132 ~~a~ 135 (319)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.01 E-value=0.071 Score=26.89 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=12.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHH
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRG 35 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~ 35 (319)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 276
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.73 E-value=0.049 Score=38.05 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=44.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (319)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3445555566666666666666554444555666666666666555665555541 111222344555555666
Q ss_pred HHHHHHHHHhhc
Q 020976 236 IDHAINVFESME 247 (319)
Q Consensus 236 ~~~a~~~~~~~~ 247 (319)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666555544
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.68 E-value=2.9 Score=36.89 Aligned_cols=275 Identities=14% Similarity=0.098 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH--HH-HHhcCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcC-
Q 020976 26 TDNALRMFRGLQKHGFVPELVTYNILI--KG-LCKAGRLRTARWILKELGD-------SGHAPNAITYTTIMKCCFRNR- 94 (319)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 94 (319)
...|.++++.....|.. ........+ .+ +....|.+.|..+|+.... .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 46788888888776532 222222222 22 4466789999999998876 44 3445667777777643
Q ss_pred ----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH----hcCC
Q 020976 95 ----KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC----KEGK 165 (319)
Q Consensus 95 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 165 (319)
+.+.|..++.+....| .|+.......+..... ..+...|.++|......|.. ..+-.+..+|. -..+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 5677999999988887 4455433332222222 24678999999999988743 33333333332 2457
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH---Hh----cCCHHH
Q 020976 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GK----DGKIDH 238 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~ 238 (319)
...|..++.+.-+.| .|....-...+..+.. +.++.+...+..+.+.+.+.....-..+.... .. ..+.+.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 889999999999887 3332222233333444 77777777777777665432211111111111 11 124556
Q ss_pred HHHHHHhhccC-CchhHHHHHHHHHcc----CChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 020976 239 AINVFESMEVK-DSFTYSSMVHNLCKA----KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQ 309 (319)
Q Consensus 239 a~~~~~~~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 309 (319)
+...+.+.... +......+...|..- .+++.|...+......+ ....-.+...+-. .+ ...|.+++
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence 66666655544 555555555555432 34677777777766654 2222223322211 23 57777777
Q ss_pred HHHHhh
Q 020976 310 SKIRMA 315 (319)
Q Consensus 310 ~~~~~~ 315 (319)
++..+.
T Consensus 533 ~~~~~~ 538 (552)
T KOG1550|consen 533 DQASEE 538 (552)
T ss_pred HHHHhc
Confidence 776553
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.63 E-value=1.4 Score=33.12 Aligned_cols=220 Identities=17% Similarity=0.038 Sum_probs=117.2
Q ss_pred CChhHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHcCchHHHHH
Q 020976 59 GRLRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATD 136 (319)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 136 (319)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12345555555666666666666666655531 113334445555555556666666666
Q ss_pred HHHHHHhCCCccChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 137 YMEQMVTDGVQLDIVSYNTLIN-LYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666542222 112222222 56677777777777777644211 11222333333335556677777777777666
Q ss_pred cCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc---hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 214 IGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 214 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
.. +. ....+..+...+...++++.|...+.......+ ..+......+...+..+.+...+.+....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 22 345566666666667777777777766655433 23344444444555667777777666654
No 279
>PRK11906 transcriptional regulator; Provisional
Probab=94.60 E-value=2.4 Score=35.64 Aligned_cols=112 Identities=9% Similarity=0.054 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHH
Q 020976 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 209 (319)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (319)
+..+|.++-+...+.+ +.|......+..+....++++.|..+|++....++. ...+|......+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456667777777764 346777777777777888899999999988876433 33455555555566889999999888
Q ss_pred HHHhcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 210 YMNKIGFDSNLE---AYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 210 ~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
+..+. .|... .....++.|+ ....+.|..++-+-
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 87664 34332 2222333443 34567777777543
No 280
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.52 E-value=0.17 Score=24.81 Aligned_cols=29 Identities=17% Similarity=-0.049 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 288 AQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
.+..+...+...|++++|++.+++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34445555555555555555555554443
No 281
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.33 Score=38.09 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=61.1
Q ss_pred CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976 5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 81 (319)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
|.+.++.+-..++..-....++++++..+-.++.. -..|+... .+.++.+. .-++++++.++..=...|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44455555555666656666777777766665432 01112111 22223222 235667777777777777777777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
+++.+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777776666544
No 282
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.49 E-value=1.5 Score=32.92 Aligned_cols=221 Identities=18% Similarity=0.043 Sum_probs=154.2
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhcCCHHHHH
Q 020976 93 NRKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAY 170 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (319)
.+....+...+......... ............+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555666666666554321 13466777778888899999999888887752 23445666777788888889999999
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHH-HHhccCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 171 LLLDEMEKQGFECDKYTHTILID-GLCKAGNIKGARLHLEYMNKIGF--DSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
+.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988764443 222233333 68899999999999999865321 1223344444444677889999999998877
Q ss_pred cCC----chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 248 VKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 248 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
... ...+..+...+...++++.+...+......... ....+......+...|..+++...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 553 455778888888889999999999998875222 2445555555555777899998888776554
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=1.4 Score=31.64 Aligned_cols=121 Identities=16% Similarity=0.074 Sum_probs=48.0
Q ss_pred HcCchHHHHHHHHHHHhCCCccChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH-hHHHH--HHHHhccCChh
Q 020976 127 KIGRLKEATDYMEQMVTDGVQLDIV-SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY-THTIL--IDGLCKAGNIK 202 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~ 202 (319)
+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|... -...+ .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3344555555555555543221110 11112223344555555555555554433222221 11111 11123445555
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
.+..-.+.+...+-+.....-..|.-+-.+.|++..|...|..+.
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 554444444333222222222334444445555555555555444
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.22 E-value=0.44 Score=30.15 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976 63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
++.+-++.+....+.|++....+.+++|-+.+|+..|.++++.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555444
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.09 E-value=0.085 Score=26.22 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=22.6
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306 (319)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 306 (319)
|++.++.. +-+...|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455543 236788888888888888888875
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.06 E-value=3.3 Score=35.13 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhCCCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHH
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILID 193 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 193 (319)
-..+..++.+.|+.++|.+.++++.+.... ........++.++...+.+.++..++.+..+...+. -...|+..+-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 345666777889999999999988765211 234467788899999999999998888875432221 2334555443
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=4.7 Score=36.48 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=124.7
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHH----hCC----------C--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQ----KHG----------F--VPELVTYNILIKGLCKAGRLRTARWILKELGDS 74 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
.+.+.++.+|...+++-.-..+++.+. ..+ . .........-+..+.+..-++-|..+-+.-.
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~-- 361 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH-- 361 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC--
Confidence 345667777777776544333333322 211 0 0112234456666677777777776654432
Q ss_pred CCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhh
Q 020976 75 GHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152 (319)
Q Consensus 75 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (319)
..++ .........-+.+.|++++|...|-+-... +.| ..++.-|........-..+++.+.+.|+. +...
T Consensus 362 -~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dh 433 (933)
T KOG2114|consen 362 -LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDH 433 (933)
T ss_pred -CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchh
Confidence 2222 122333344455778888888777665432 122 24455666666777777788888887764 5666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (319)
-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++|..+-..... +......+ +..
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~ 502 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LED 502 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHH
Confidence 7788888999888888877776544 2211 11234556666666666777655443322 22333333 345
Q ss_pred cCCHHHHHHHHHhhcc
Q 020976 233 DGKIDHAINVFESMEV 248 (319)
Q Consensus 233 ~~~~~~a~~~~~~~~~ 248 (319)
.+++++|.+.+..++-
T Consensus 503 ~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 503 LHNYEEALRYISSLPI 518 (933)
T ss_pred hcCHHHHHHHHhcCCH
Confidence 6778888888877653
No 288
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.90 E-value=3.3 Score=34.63 Aligned_cols=51 Identities=14% Similarity=-0.063 Sum_probs=40.2
Q ss_pred HHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
+...|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|+.++..+.
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 4567888888766555544 67899999988888889999999999987753
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.79 E-value=0.099 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTAR 65 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~ 65 (319)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555555555555553
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.74 E-value=1.7 Score=30.74 Aligned_cols=51 Identities=10% Similarity=-0.061 Sum_probs=22.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccH-HHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGY-CTVIAAFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
+.++.+.+..++..+... .|..... ..-...+.+.|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555555443 2222111 11222344455555555555555443
No 291
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.72 E-value=1.1 Score=28.69 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
+..+-++.+....+.|++......+++|-+.+++..|.++++.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555443
No 292
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.71 E-value=3.8 Score=34.62 Aligned_cols=121 Identities=8% Similarity=0.004 Sum_probs=82.1
Q ss_pred HhcCChhHHHHH-HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976 91 FRNRKYKLGLEI-LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169 (319)
Q Consensus 91 ~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
...|+...|-+- +..+... +-++.........+...|+++.+...+...... +.....+...+++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 345665555443 3334333 334444444445667789999999888776654 334566788889999999999999
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
..+-..|....++ ++.............|-++++...|+++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999988877666 44444444444455678899999999887765
No 293
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.69 E-value=1.2 Score=28.67 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=51.4
Q ss_pred chHhHHHHHHHHhhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+-..|..--..+....+.+ +..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.. ..+....|..+
T Consensus 7 t~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~ 85 (108)
T PF02284_consen 7 TDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYI 85 (108)
T ss_dssp -HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHH
T ss_pred CHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHH
Confidence 3344555445555544433 56677778888888999999999999999999999999999999864 22233366666
Q ss_pred HH
Q 020976 87 MK 88 (319)
Q Consensus 87 ~~ 88 (319)
++
T Consensus 86 lq 87 (108)
T PF02284_consen 86 LQ 87 (108)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.58 E-value=0.47 Score=30.02 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
++.+-+..+......|++....+.+++|.+.+++.-|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555666666666666666666666666666666555
No 295
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.43 E-value=2.9 Score=32.40 Aligned_cols=149 Identities=9% Similarity=0.027 Sum_probs=67.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH---cCC--CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc-----CCCCChhhHHH
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEK---QGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-----GFDSNLEAYNC 225 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ 225 (319)
++....+.+++++..+.+.++.. +.+ .-+..+.+.++.....+.+.+....+++.-.+. +-+.-..|-..
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 44455555555555555555431 111 113334444444444444444333333322111 11111223344
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC---------------CchhHHHHHHHHHccCChhHHHHHHHHHHHc-CCccCHHHH
Q 020976 226 IVDRLGKDGKIDHAINVFESMEVK---------------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQ 289 (319)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 289 (319)
+...|...|.+....++++++... -...|..-|+.|..+.+-.....++++.+.- .--|.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 555566666666666666555421 1235666666676666666666666655432 122344333
Q ss_pred HHHHHHH-----HhcCCHHHH
Q 020976 290 KAVVDGL-----RHSGCRREA 305 (319)
Q Consensus 290 ~~l~~~~-----~~~g~~~~a 305 (319)
. +|+-| .+.|.+++|
T Consensus 231 G-vIRECGGKMHlreg~fe~A 250 (440)
T KOG1464|consen 231 G-VIRECGGKMHLREGEFEKA 250 (440)
T ss_pred h-HHHHcCCccccccchHHHH
Confidence 2 23332 346666665
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.41 E-value=0.25 Score=24.27 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=13.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 253 TYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555444
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.27 E-value=2.1 Score=30.32 Aligned_cols=18 Identities=28% Similarity=0.363 Sum_probs=8.5
Q ss_pred HhcCChhHHHHHHHHHhh
Q 020976 56 CKAGRLRTARWILKELGD 73 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~ 73 (319)
...|++.+|.++|+++..
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344445555555544433
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.17 E-value=0.28 Score=25.37 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=14.6
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQ 37 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (319)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555555566666555555543
No 299
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.80 E-value=5.2 Score=33.59 Aligned_cols=138 Identities=16% Similarity=0.249 Sum_probs=84.4
Q ss_pred HhhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--HH
Q 020976 20 LCKNRYTDNALRMFRGLQKHGFVPEL------VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC--CF 91 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 91 (319)
+-+++++++|.++|.++-+. ...++ ..-+.++++|.. ++.+.....+..+.+. .| ...|-.+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 45678999999999888664 22222 223566677754 4566666666666553 22 3334444443 34
Q ss_pred hcCChhHHHHHHHHHHhC--CCCC------------CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCC----ccChhhH
Q 020976 92 RNRKYKLGLEILSAMKRK--GYTF------------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV----QLDIVSY 153 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 153 (319)
+.+++.+|++.+..-... +..+ |-..=+..++++...|.+.++..+++++...-. .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888887766554 2221 111123456677888999999888888776522 3577778
Q ss_pred HHHHHHHHh
Q 020976 154 NTLINLYCK 162 (319)
Q Consensus 154 ~~l~~~~~~ 162 (319)
+.++-.+.+
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 776555544
No 300
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.70 E-value=4 Score=32.05 Aligned_cols=61 Identities=8% Similarity=0.088 Sum_probs=29.1
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcHHhHHHHHHHHhccCChhHHHHHH
Q 020976 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCKAGNIKGARLHL 208 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (319)
++..+...++..++..+++.+-.++++..... ++.-|...|..++......|+..-...+.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444444555555555555555555444432 33334445555555555555544444443
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.67 E-value=0.075 Score=37.11 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=48.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45566666777777777777776554455667777777777776666666665511 11222345555555566
Q ss_pred hhHHHHHHHHH
Q 020976 96 YKLGLEILSAM 106 (319)
Q Consensus 96 ~~~a~~~~~~~ 106 (319)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66665555543
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=3 Score=30.55 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH--HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH----
Q 020976 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH--TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN---- 224 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 224 (319)
..|..++.... .+.. +......++...........+ ..+...+...+++++|...++..... |....+.
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 34444444443 2222 444444555544222122222 22345567778888888888776643 2223332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020976 225 -CIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281 (319)
Q Consensus 225 -~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (319)
.|.+.....|.+++|...++....+ .......-...+...|+-++|..-|.+.+..+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3445566788888888888877766 33334445667788888888888888887765
No 303
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.57 E-value=2.5 Score=29.40 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=69.8
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHhcCC-hhHHHHHHHH
Q 020976 34 RGLQKHGFVPELV--TYNILIKGLCKAGRLRTARWILKELGDSGH-----APNAITYTTIMKCCFRNRK-YKLGLEILSA 105 (319)
Q Consensus 34 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 105 (319)
..|.+.+..++.. ..+.++.-....+++.....+++.+..... ..+...|+.++++..+... ---+..+|..
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3455555555543 346777777777888888887777643111 2367789999999876665 4557778888
Q ss_pred HHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976 106 MKRKGYTFDGFGYCTVIAAFVKIGRLKE 133 (319)
Q Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 133 (319)
+++.+.++++..|..++.++.+-...+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 8888889999999999988887544443
No 304
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.43 E-value=7.3 Score=34.42 Aligned_cols=177 Identities=12% Similarity=0.022 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHhCCCccChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------cCCCCcHHhHHHHHHHHhcc
Q 020976 131 LKEATDYMEQMVTDGVQLDIVSYNTLINL-----YCKEGKLEAAYLLLDEMEK-------QGFECDKYTHTILIDGLCKA 198 (319)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 198 (319)
...+.++++...+.| +...-..+..+ +....+.+.|+.+|....+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467788888877765 22222223222 3456788888888888866 44 233455566666554
Q ss_pred C-----ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhhccC-CchhHHHHHHHHH----ccCCh
Q 020976 199 G-----NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK-DGKIDHAINVFESMEVK-DSFTYSSMVHNLC----KAKRL 267 (319)
Q Consensus 199 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~ 267 (319)
. +.+.|..++....+.| .|+...+...+..... ..+...|.++|...... .+..+-.+..+|. ...+.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 3 5667888888888777 3444333322222222 24678888888877655 4444444443333 23466
Q ss_pred hHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
+.|..++++..+.| .|....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 78888888888887 3332222333334444 77777766666665554
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.32 E-value=0.5 Score=24.38 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 287 SAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777776544
No 306
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.06 E-value=8.7 Score=34.46 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 020976 15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 58 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 58 (319)
.+|..|.++|++++|.++....... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4778899999999999999555443 344556667777777664
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.02 E-value=0.71 Score=22.52 Aligned_cols=28 Identities=18% Similarity=-0.077 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 288 AQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555555555555555555554443
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.02 E-value=11 Score=35.71 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcC
Q 020976 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL--EAYNCIVDRLGKDG 234 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 234 (319)
...+.....+++|.-.|+..-+ ....+.+|...|+|.+|..+..++... .+. .+-..|+..+...+
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcc
Confidence 3334445555555555544321 123355566666666666665554321 111 11244555556666
Q ss_pred CHHHHHHHHHhhcc
Q 020976 235 KIDHAINVFESMEV 248 (319)
Q Consensus 235 ~~~~a~~~~~~~~~ 248 (319)
++-+|-++..+...
T Consensus 1014 kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYLS 1027 (1265)
T ss_pred cchhHHHHHHHHhc
Confidence 66666666555443
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.01 E-value=0.56 Score=22.95 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=14.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQK 38 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 38 (319)
+|..+...+...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555554
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.00 E-value=2.1 Score=31.60 Aligned_cols=80 Identities=16% Similarity=0.027 Sum_probs=53.7
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcHHhHHHHHHHHhccCC
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFECDKYTHTILIDGLCKAGN 200 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 200 (319)
.+.+.|+ +.|.+.|-.+...+.--++.....+...| ...+.+++..++-...+. +-.+|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3444444 56777777777665444555444444444 467788888888777643 336678888888888888888
Q ss_pred hhHHH
Q 020976 201 IKGAR 205 (319)
Q Consensus 201 ~~~a~ 205 (319)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 88775
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.73 E-value=0.46 Score=22.95 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 292 VVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555556666666666655544
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.54 E-value=2.1 Score=32.03 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=51.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG--HAPNAITYTTIMKC 89 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 89 (319)
|.+..++.+.+.+.+++|+...++-.+..+ .|..+-..++..++-.|++++|..-++-.-... ..+....|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445566777788888888888777666533 256666777888888888888877766655421 22345566666654
No 313
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.53 E-value=4.7 Score=30.26 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=13.2
Q ss_pred ccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 116 FGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
.+||-+.-.+...|+++.|.+.|+...+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 3444444444444555555554444444
No 314
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.50 E-value=8.2 Score=33.05 Aligned_cols=179 Identities=9% Similarity=0.020 Sum_probs=110.2
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
|-...-+++..+..+.+++-...+..+|...| .+-..|..++..|... ..+.-..+++++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44556677777777777777777888887753 3667777888888777 556777777777775443 4444455555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHh
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFD-----GFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCK 162 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 162 (319)
.|-+ ++.+.+..+|.++...=++.. ...|.-+.... ..+.+..+.+...+... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 677777777777665422211 12333333211 24556666666666543 333445556666677788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 020976 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
..++.+|++++..+.+..-+ |...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 88899999999887766433 444444444443
No 315
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.38 E-value=1.7 Score=31.95 Aligned_cols=87 Identities=17% Similarity=0.051 Sum_probs=60.9
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHH---HHHHHcc
Q 020976 193 DGLCKAGNIKGARLHLEYMNKIGFDSNL-----EAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM---VHNLCKA 264 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~ 264 (319)
.-+...|++++|..-|...++.- ++.. ..|..-..++.+.+.++.|+.-.......++.--.++ ..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34567899999999999888762 3322 2334444566778888888887777776655433333 3467788
Q ss_pred CChhHHHHHHHHHHHc
Q 020976 265 KRLPSASKLLLSCLKS 280 (319)
Q Consensus 265 ~~~~~a~~~~~~~~~~ 280 (319)
..+++|++-++++++.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8899999999988875
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.24 E-value=7.3 Score=31.94 Aligned_cols=192 Identities=10% Similarity=0.018 Sum_probs=100.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC---C-CChhhHHHHHHHHH
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH---A-PNAITYTTIMKCCF 91 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~~l~~~~~ 91 (319)
...+.-+.|+++...+........ .++...+..+... ..++++++...+++....-. . .....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356777889988865555554432 2355566655544 78899998888887754210 0 11222333333333
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-----cCchH---HHHHHHHHHHh--CCCccChhhHHHHHHHHH
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-----IGRLK---EATDYMEQMVT--DGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~---~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 161 (319)
+...+.+..++.+-..... .+......++..... .++++ ..+.+-..+.. ........+|..++..+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 3333333333332221110 001112222222111 11111 11111111111 112334567788888899
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC---cHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 162 KEGKLEAAYLLLDEMEKQGFEC---DKYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
+.|.++.|...+..+...+... ++.....-++..-..|+..+|...++...+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999998887654221 334444556666778888899888888776
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.21 E-value=0.4 Score=21.96 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 020976 289 QKAVVDGLRHSGCRREAKKIQS 310 (319)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~ 310 (319)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455666667777777766654
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.19 E-value=0.69 Score=24.58 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCC
Q 020976 257 MVHNLCKAKRLPSASKLLLSCLKSGV 282 (319)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~ 282 (319)
+..+|...|+.+.|.+++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 45667777777777777777665443
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.01 E-value=4.9 Score=29.54 Aligned_cols=128 Identities=12% Similarity=-0.024 Sum_probs=81.5
Q ss_pred HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHhhccC-Cch-----hHHH
Q 020976 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY--NCIVDRLGKDGKIDHAINVFESMEVK-DSF-----TYSS 256 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-----~~~~ 256 (319)
...|..++.... .+.. +.....+.+...+-.....++ ..+...+...|++++|...++..... .-. .--.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 344555555543 3333 444445555543211111222 23455678899999999999976643 222 2234
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
+.+.....|.+++|+..++.....+. .......-.+.+...|+.++|+.-|++..+.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 56677889999999999987665433 23334555678999999999999999877664
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.81 E-value=2.9 Score=31.31 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcHHhHHHHHH
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILID 193 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 193 (319)
.+.-++.+.+.+.+.+++...++-.+.+ +.+......+++.++-.|+|++|..-++-.-+... .+...+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4445566667777777777777666652 34555666677777777777777766665554322 223345555554
No 321
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.77 E-value=3 Score=26.75 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
..++|..+-+-+...+-. ...+-..-+..+.+.|++++|..+.+....||...|.++-. .+.|-.+++..-+.++..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 346666666666554311 22222223445677888888888888887777777766543 355666666666666666
Q ss_pred cCC
Q 020976 280 SGV 282 (319)
Q Consensus 280 ~~~ 282 (319)
.|-
T Consensus 97 sg~ 99 (115)
T TIGR02508 97 SGD 99 (115)
T ss_pred CCC
Confidence 543
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.74 E-value=0.89 Score=22.07 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=12.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHh
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQK 38 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 38 (319)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555444
No 323
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.45 E-value=1.2 Score=27.05 Aligned_cols=47 Identities=11% Similarity=-0.051 Sum_probs=34.6
Q ss_pred ccCChhHHHHHHHHHHHcCCccC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 020976 263 KAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKIQ 309 (319)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 309 (319)
..++.++|+..|...++.-..|. ..++..++.+++..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888887643332 246677888888999988887764
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.33 E-value=4.4 Score=29.94 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=42.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCc----HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 020976 160 YCKEGKLEAAYLLLDEMEKQGFECD----KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (319)
+..+|++++|..-|...+..-+..+ ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 4455556666555555554321111 1223333344455555555555555555443 1112222223345555566
Q ss_pred HHHHHHHHHhhccCCc
Q 020976 236 IDHAINVFESMEVKDS 251 (319)
Q Consensus 236 ~~~a~~~~~~~~~~~~ 251 (319)
+++|++-+..+...+|
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 6666666665555443
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.27 E-value=9 Score=31.38 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=99.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCcccHHHHHHHHH
Q 020976 51 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY----TFDGFGYCTVIAAFV 126 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~ 126 (319)
...+..+.|+++...+........ .++...+..+... +.++++++...++.....-. ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356677888998866655555432 2344555555433 77888888888877764310 112233444444444
Q ss_pred HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh-cCCHHHHHHHHHHHHH---c--C----CCCcHHhHHHHHHHHh
Q 020976 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK-EGKLEAAYLLLDEMEK---Q--G----FECDKYTHTILIDGLC 196 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~---~--~----~~~~~~~~~~l~~~~~ 196 (319)
+...+.+..++.+-..... .+......++..... ......-...++.+.. . + ......++..++..+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 4444444444443332211 112223333332221 1111112222222221 0 1 2234456777777778
Q ss_pred ccCChhHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976 197 KAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEV 248 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (319)
+.|.++.|...+..+...+... .+.....-+...-..|+..+|...++....
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888877777643111 334444455666677777788777766554
No 326
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.10 E-value=7.9 Score=30.48 Aligned_cols=135 Identities=8% Similarity=0.155 Sum_probs=87.4
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCcHHhHHHHHHHHhc-cC-ChhHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHH
Q 020976 163 EGKLEAAYLLLDEMEK-QGFECDKYTHTILIDGLCK-AG-NIKGARLHLEYMNKI-GFDSNLEAYNCIVDRLGKDGKIDH 238 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 238 (319)
+....+|+.+|+.... ..+--|......+++.... .+ ......++.+.+... +-.++..+...++..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445667777763221 2234466677777776654 22 333344444555433 346777888889999999999999
Q ss_pred HHHHHHhhccC-----CchhHHHHHHHHHccCChhHHHHHHHH-----HHHcCCccCHHHHHHHHHHHH
Q 020976 239 AINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLS-----CLKSGVRILKSAQKAVVDGLR 297 (319)
Q Consensus 239 a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 297 (319)
-.++++..... |...|..+|......|+..-...+..+ +.+.|+..+...-..+-..+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99999875533 888999999999999997766665544 233456666655555544443
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.90 E-value=5.1 Score=28.00 Aligned_cols=50 Identities=10% Similarity=-0.027 Sum_probs=21.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976 93 NRKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.++.+++..+++.|.-. .|+. ..-..-...+...|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 44555555555555433 1211 11111122334455555555555555544
No 328
>PRK09687 putative lyase; Provisional
Probab=89.10 E-value=9.9 Score=30.18 Aligned_cols=234 Identities=12% Similarity=-0.038 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCcccH
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY----KLGLEILSAMKRKGYTFDGFGY 118 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 118 (319)
+|.......+.++...|. +.+...+..+.. .+|...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 466666677777777765 344444444544 24666666666777777763 4566666666433 4555555
Q ss_pred HHHHHHHHHcCch-----HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 020976 119 CTVIAAFVKIGRL-----KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193 (319)
Q Consensus 119 ~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
...+.++...+.. ..+...+...... ++..+-...+.++.+.++ +.+...+..+.+ .++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 5666666554321 2333444333332 355666777788877776 456666666665 334455555566
Q ss_pred HHhccC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHH
Q 020976 194 GLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASK 272 (319)
Q Consensus 194 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 272 (319)
++...+ +...+...+..+.. .++..+-...+.++.+.|+..-.-.+.+.+...+ .....+.++...|.. +|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHH
Confidence 665543 23456666655553 4566777778888888888544444444444333 345677788888874 6888
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHH
Q 020976 273 LLLSCLKSGVRILKSAQKAVVDGLR 297 (319)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (319)
.+..+.+. .||...-...+.+|.
T Consensus 256 ~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 256 VLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888764 347766666666654
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.04 E-value=6 Score=27.65 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=23.4
Q ss_pred cCChhHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 58 AGRLRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.++++++..+++.|.-..+. +...++... .+...|+|++|..+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555442111 112222222 244555666666666655544
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.00 E-value=15 Score=32.23 Aligned_cols=102 Identities=20% Similarity=0.168 Sum_probs=64.3
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
...+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+.
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 3445677777766655432 455677788888888888888777765542 3455666666777666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
...+-....+.| .. |.-.-+|...|+++++.+++.+-
T Consensus 711 l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 665555555554 22 22334566778888887777654
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.50 E-value=11 Score=32.94 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=94.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.-+.+...+.++|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 4567777777888777777652 23221 2234457799999988876643 5677999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
..+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|. + |...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~--~----N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK--N----NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc--c----chHHHHHHHcCCHHHHHH
Confidence 99999999999877653 45677778888887776666666666653 2 333456778899999998
Q ss_pred HHHHHH
Q 020976 172 LLDEME 177 (319)
Q Consensus 172 ~~~~~~ 177 (319)
++..-.
T Consensus 743 lLi~t~ 748 (794)
T KOG0276|consen 743 LLISTQ 748 (794)
T ss_pred HHHhcC
Confidence 886653
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.36 E-value=1.7 Score=23.07 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=8.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 020976 158 NLYCKEGKLEAAYLLLDEME 177 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~ 177 (319)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444443
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.21 E-value=1.9 Score=20.93 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=15.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQK 38 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 38 (319)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555556666666666666655544
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.04 E-value=8 Score=28.07 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976 267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296 (319)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (319)
+++|...|++..+. .|+..+|..-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34444555555443 56666666666555
No 335
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=87.92 E-value=19 Score=32.04 Aligned_cols=163 Identities=11% Similarity=0.024 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHh
Q 020976 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC 196 (319)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (319)
.|..-+..+..+++.. ....+.+...-.-.+...-..++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 3444444433333222 33444444432223444556667777777777777777766554321 2234555556666
Q ss_pred ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHH--HHccCChhHHHHHH
Q 020976 197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHN--LCKAKRLPSASKLL 274 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~ 274 (319)
++|+...+..+.+.+.+.....+......++....... +.......|..+-.. ....+++.+|.+.+
T Consensus 450 ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~-----------~~~~~L~fla~yreF~~~~~~~~~~~Aa~~L 518 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPM-----------LLSQRLSFLAKYREFYELYDEGDFREAASLL 518 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchh-----------hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 67776666555555443221111111111211111111 000111111111111 13347778888888
Q ss_pred HHHHHcCCccCHHHHHHHHH
Q 020976 275 LSCLKSGVRILKSAQKAVVD 294 (319)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~ 294 (319)
-.+.+.+..|...-...+.+
T Consensus 519 v~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 519 VSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------
T ss_pred HHHHCCCCCcHHHHHHHHHH
Confidence 77777777766544444433
No 336
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.64 E-value=13 Score=29.80 Aligned_cols=132 Identities=11% Similarity=0.144 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH--cC----chHHHHHHHHHHHhCCC---ccChhhHHHHHHHHHhcCC-
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK--IG----RLKEATDYMEQMVTDGV---QLDIVSYNTLINLYCKEGK- 165 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 165 (319)
+++.+.+++.|.+.|+..+..+|-+....... .. ...++..+++.|.+.-. .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556677777888777776555443333222 11 23567778888877521 1233344444433 2333
Q ss_pred ---HHHHHHHHHHHHHcCCCCcHH--hHHHHHHHHhccCC--hhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 020976 166 ---LEAAYLLLDEMEKQGFECDKY--THTILIDGLCKAGN--IKGARLHLEYMNKIGFDSNLEAYNCIVDR 229 (319)
Q Consensus 166 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (319)
.+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 345666777777766654322 23333333222222 34677778888888877776666655433
No 337
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.43 E-value=3.1 Score=27.97 Aligned_cols=45 Identities=16% Similarity=0.030 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
..+-+..+...++.|++......+++|.+.+++.-|.++|+-++-
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444555556666666666666666666666666655543
No 338
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.39 E-value=6.6 Score=31.71 Aligned_cols=88 Identities=9% Similarity=-0.109 Sum_probs=57.6
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976 19 GLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97 (319)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (319)
-|.++|++++|++.|...... .| |..++..-..+|.+...+..|..-.+.....+- .-...|..-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 477889999999999887664 34 888888888889998888877776666554210 01233444444444455566
Q ss_pred HHHHHHHHHHhC
Q 020976 98 LGLEILSAMKRK 109 (319)
Q Consensus 98 ~a~~~~~~~~~~ 109 (319)
+|.+-++.....
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 666666655544
No 339
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.24 E-value=24 Score=32.54 Aligned_cols=222 Identities=13% Similarity=-0.006 Sum_probs=119.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcc-------cHHHHHH-HHHHcCchHHHHHHHHHHHhC----CCccChhhHHHHH
Q 020976 90 CFRNRKYKLGLEILSAMKRKGYTFDGF-------GYCTVIA-AFVKIGRLKEATDYMEQMVTD----GVQLDIVSYNTLI 157 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 157 (319)
.....++++|..+..++...-..|+.. .++.+-. .....|+++.+.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678999999888876542222221 2222221 233468889998888877654 2234556677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHH-----HHHhccCCh--hHHHHHHHHHHhc---CCC---CChhhHH
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI-----DGLCKAGNI--KGARLHLEYMNKI---GFD---SNLEAYN 224 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~---~~~---~~~~~~~ 224 (319)
.+..-.|++++|..+..+..+..-..+...+.... ..+...|+. .+....+...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999999988776543333433332222 234455632 2233333333222 101 1223344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhhccC---Cch---hHHHHHHHHHccCChhHHHHHHHHHHHcCCcc----CHHHHHHHH
Q 020976 225 CIVDRLGKD-GKIDHAINVFESMEVK---DSF---TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI----LKSAQKAVV 293 (319)
Q Consensus 225 ~l~~~~~~~-~~~~~a~~~~~~~~~~---~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 293 (319)
.+..++.+. +...++..-+.--... ... .+..++......|+.++|...+.++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 1122222222211111 111 22356777888999999999999887653333 222222222
Q ss_pred H--HHHhcCCHHHHHHHHHH
Q 020976 294 D--GLRHSGCRREAKKIQSK 311 (319)
Q Consensus 294 ~--~~~~~g~~~~a~~~~~~ 311 (319)
. .....|+..++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2 23458888888777655
No 340
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.01 E-value=13 Score=29.17 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH---
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC--- 161 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 161 (319)
.=|++++..++|.+++...-+..+..-+..+.....-|-.|.+.+++..+.++-..-....-.-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34677788888888777665554432222334455556677788888887777776665422223344666655554
Q ss_pred --hcCCHHHHHHHH
Q 020976 162 --KEGKLEAAYLLL 173 (319)
Q Consensus 162 --~~~~~~~a~~~~ 173 (319)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 368888887776
No 341
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=86.61 E-value=6.9 Score=25.77 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 252 FTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
.-|..++..|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888899999999999988876
No 342
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.53 E-value=6.6 Score=25.29 Aligned_cols=86 Identities=15% Similarity=0.079 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 020976 25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS 104 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (319)
..++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+ ..||...|-.|.. .+.|.-+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 456677666666554211 1222222334556677788777776655 3577777766643 45666666666666
Q ss_pred HHHhCCCCCCcccH
Q 020976 105 AMKRKGYTFDGFGY 118 (319)
Q Consensus 105 ~~~~~~~~~~~~~~ 118 (319)
++...| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 666666 4443333
No 343
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=86.28 E-value=3.9 Score=23.70 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 285 LKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
|..-...+|.++...|++++|.++.+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444555566677777777777776666543
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.80 E-value=13 Score=28.03 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
.+||.+.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 34555555555555555555555555544
No 345
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.76 E-value=30 Score=32.05 Aligned_cols=191 Identities=12% Similarity=0.047 Sum_probs=105.4
Q ss_pred HHHcCchHHHHHHHHHHHhCCCccChh-------hHHHHH-HHHHhcCCHHHHHHHHHHHHHc----CCCCcHHhHHHHH
Q 020976 125 FVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLI-NLYCKEGKLEAAYLLLDEMEKQ----GFECDKYTHTILI 192 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 192 (319)
.....++.+|..++.++...-..|+.. .++.+- ......|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345688999999998887652222211 233332 2334578899999988877654 2233455667777
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCCh---hhHHHH--HHHHHhcCCHHHH--HHHHHhhccC-----C-----chhHH
Q 020976 193 DGLCKAGNIKGARLHLEYMNKIGFDSNL---EAYNCI--VDRLGKDGKIDHA--INVFESMEVK-----D-----SFTYS 255 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l--~~~~~~~~~~~~a--~~~~~~~~~~-----~-----~~~~~ 255 (319)
.+..-.|++++|..+.....+..-.-+. ..+..+ ...+...|+...+ ...|..+... . ..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777889999999888777654222222 223322 2334567743333 2333322211 1 23344
Q ss_pred HHHHHHHcc-CChhHHHHHHHHHHHcCCccCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 256 SMVHNLCKA-KRLPSASKLLLSCLKSGVRILKSAQ--KAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 256 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
.++.++.+. +...++..-+.........|-..-. ..++......|+.++|...++++...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455555541 1122222222222222222221222 25667788899999999999888654
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.65 E-value=7.6 Score=31.38 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=31.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976 53 KGLCKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
+-|.++|.+++|+..|..-... .| |++++..-..+|.+...+..|..-.....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455666677777666665543 23 66666666666666666665555444444
No 347
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=85.52 E-value=6.8 Score=24.47 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=17.3
Q ss_pred hcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCC
Q 020976 232 KDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKR 266 (319)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (319)
..|+.+.|.+++..+. ..+..|..++.++-..|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 3455555555555555 445555555555544444
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.03 E-value=24 Score=30.44 Aligned_cols=165 Identities=11% Similarity=0.029 Sum_probs=90.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHH
Q 020976 78 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 157 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (319)
.|.....+++..+..+..+.-+..+..+|..-| .+...+..++.+|... ..++-..+++++.+..+. |++.-..+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355566666777777666777777777776654 3455666777777766 556666677766665332 233233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-----cHHhHHHHHHHHhccCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHHH
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFEC-----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEAYNCIVDRLG 231 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 231 (319)
.-|.+ ++.+.+...|.++..+-++- -...|..+... -..+.+....+...+.+. |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 66666666776665431110 01133333321 134556666665555543 32233344444555666
Q ss_pred hcCCHHHHHHHHHhhccC
Q 020976 232 KDGKIDHAINVFESMEVK 249 (319)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~ 249 (319)
...++++|++++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 677777777777765544
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.00 E-value=23 Score=30.23 Aligned_cols=122 Identities=10% Similarity=0.073 Sum_probs=78.6
Q ss_pred HhhcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 020976 20 LCKNRYTDNAL-RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 98 (319)
Q Consensus 20 ~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (319)
....|++..|- ++++.+....-.|+.....+. .+...|+++.+...+...... +.....+...+++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 33456665554 444444443333554444333 455678999988887766542 33456678888888888999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC
Q 020976 99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
|..+-+-|....+. ++..........-..|-++++...|++....+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99998888876543 44444443444455677888888888877653
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.85 E-value=2.1 Score=19.65 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=14.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 253 TYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
.|..+...+...++++.|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344455555555566666655555543
No 351
>PRK09687 putative lyase; Provisional
Probab=84.47 E-value=19 Score=28.65 Aligned_cols=217 Identities=10% Similarity=0.029 Sum_probs=134.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCch----HHHHHHHHHHHhCCCccChhhH
Q 020976 78 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL----KEATDYMEQMVTDGVQLDIVSY 153 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
+|.......+.++...|.. .+...+..+.. .+|+..-...+.++.+.|+. +++...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4666666677777766653 34444444443 33556666667777777764 4677777776443 3566666
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 020976 154 NTLINLYCKEGKL-----EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228 (319)
Q Consensus 154 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (319)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+ .++..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHH
Confidence 6677777665432 233344433332 34666667778888888774 55566666655 345555566666
Q ss_pred HHHhcC-CHHHHHHHH-HhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976 229 RLGKDG-KIDHAINVF-ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 306 (319)
Q Consensus 229 ~~~~~~-~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 306 (319)
++.+.+ +.+.+...+ ..+...+..+-...+.++.+.++ ..++..+-+.++.+. .....+.++...|.. +|.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~ 254 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLL 254 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHH
Confidence 666543 133444444 44555688888888999999888 567777766666432 245677888888886 677
Q ss_pred HHHHHHHh
Q 020976 307 KIQSKIRM 314 (319)
Q Consensus 307 ~~~~~~~~ 314 (319)
..+.++.+
T Consensus 255 p~L~~l~~ 262 (280)
T PRK09687 255 PVLDTLLY 262 (280)
T ss_pred HHHHHHHh
Confidence 77777654
No 352
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=37 Score=31.76 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGD 73 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
-|..|+..|...|+.++|+++|.++.+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 355666666666666666666666654
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.69 E-value=20 Score=28.41 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=48.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
+++.....|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44556678889999999999999888763 34777888899999999998888777777654
No 354
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.60 E-value=8.9 Score=25.93 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 020976 65 RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108 (319)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (319)
.+-++.+....+.|++.....-+++|-+.+|+..|.++|+.++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555543
No 355
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.52 E-value=8.7 Score=28.42 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=18.4
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 283 RILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
.|++.+|..++.++...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666665555543
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.94 E-value=15 Score=32.21 Aligned_cols=87 Identities=8% Similarity=0.032 Sum_probs=54.8
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHH
Q 020976 57 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 136 (319)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 136 (319)
-.|+...|...+.......+.-.-+....|.+...+.|....|..++.+..... ...+-++-.+.+++....+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 457777777766665543332233445555566666666667777776665554 3445566667777777777777777
Q ss_pred HHHHHHhC
Q 020976 137 YMEQMVTD 144 (319)
Q Consensus 137 ~~~~~~~~ 144 (319)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 77777665
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=82.43 E-value=11 Score=24.61 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (319)
...++|..+.+.+...+-. ...+--+-+..+...|++++| +..- .....||...|-.| +-.+.|--+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 3566777777776665332 222223333455667777777 1111 12234566665555 334666666666666
Q ss_pred HHHHhCC
Q 020976 104 SAMKRKG 110 (319)
Q Consensus 104 ~~~~~~~ 110 (319)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6666555
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.65 E-value=23 Score=27.71 Aligned_cols=207 Identities=13% Similarity=0.049 Sum_probs=123.7
Q ss_pred CCCCcchHhHHHHHHH-HhhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhh---CCC
Q 020976 4 GDLTPCTATFNIMLNG-LCKNRYTDNALRMFRGLQKHGFVP---ELVTYNILIKGLCKAGRLRTARWILKELGD---SGH 76 (319)
Q Consensus 4 ~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 76 (319)
.+-.||+..=|..-.. -.+..++++|+.-|++..+....- .-.+...++....+.+++++....|.++.. +.+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 4456776664433322 223457889999999887743222 234556778888899999999888888753 111
Q ss_pred --CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---cccHHHHHHHHHHcCchHHHHHHHHHHHhC-----
Q 020976 77 --APNAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTD----- 144 (319)
Q Consensus 77 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 144 (319)
.-+..+.|.++.......+.+....+|+.-.+. .-+.+ -.|-.-|...|...+++.+..++++++..+
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 124556777777766666666666555543221 00111 122345677788888888888888887653
Q ss_pred CC------ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHH-----hccCChhHHHHHHHHH
Q 020976 145 GV------QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGL-----CKAGNIKGARLHLEYM 211 (319)
Q Consensus 145 ~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~ 211 (319)
|- ..-...|..-|+.|....+-.+...++++...-. .-|.+.. .-.|+-| .+.|.+++|..-|-+.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHH
Confidence 10 0113457777788888888788888888765432 2333333 3344444 3557777775444333
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.03 E-value=25 Score=27.69 Aligned_cols=126 Identities=15% Similarity=0.062 Sum_probs=84.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhC-----CCC-CC-------HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKH-----GFV-PE-------LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 79 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (319)
.....+.+.-..|+..|++..++-.+. +.. |+ ......=|.+++..+++.++..+.-+....--+.-
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 344444555578899998888776542 011 11 11234557899999999999988777655322233
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-----cCchHHHHHHH
Q 020976 80 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-----IGRLKEATDYM 138 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~ 138 (319)
+......|-.|.+.+++..+.++-..-.+..-.-+...|.+++..|.. .|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 455666667789999999999888776654323444558887777665 59999998877
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.76 E-value=13 Score=27.45 Aligned_cols=61 Identities=11% Similarity=-0.030 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCChhHHHH---HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 47 TYNILIKGLCKAGRLRTARW---ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
-+...+......++.+.... ..++... ..|++..|..++.++...|+.++|.+...++...
T Consensus 110 ~~~~~l~~~~~~~~~~~l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 110 YYAALLLLARLPPDPEMLEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333334444443333 3333333 3678888888888888888888888888877765
No 361
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=80.64 E-value=14 Score=25.88 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
..++..+...++.-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444444444444555555555555444444444333444444333
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.87 E-value=8.3 Score=23.59 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=20.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHH
Q 020976 197 KAGNIKGARLHLEYMNKIGFDSN--LEAYNCIVDRLGKDGKIDHAIN 241 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 241 (319)
...+.++|...|....+.-..+. ..++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554321111 1334444555555555554443
No 363
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.44 E-value=22 Score=25.97 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 020976 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180 (319)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (319)
+++|...|+.... ..|+...|+.-+.... +|-++..++.+++
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 3445555555555 3577777777666552 3555566665554
No 364
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=79.26 E-value=8.1 Score=20.96 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=17.7
Q ss_pred HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 020976 20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILI 52 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 52 (319)
..+.|-.+++..++++|.+.|+..+...|..++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 334455555555555555555555555555444
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.86 E-value=36 Score=28.25 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=19.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976 79 NAITYTTIMKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
.+.++..+-..+...|+.+.|.+++++..
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55566666666777777777766666553
No 366
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.86 E-value=20 Score=25.14 Aligned_cols=101 Identities=7% Similarity=0.076 Sum_probs=69.2
Q ss_pred HHHhhCCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCcccHHHHHHHHHHcCc-hHHHHHHHHH
Q 020976 69 KELGDSGHAPNAI--TYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGFGYCTVIAAFVKIGR-LKEATDYMEQ 140 (319)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~ 140 (319)
..|.+.+..++.. ..+.++.-....+++...+.+++.+.... -..+...|..++.+..+... ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3444444444443 35666666667777888888777774321 13567789999998876665 4557788888
Q ss_pred HHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976 141 MVTDGVQLDIVSYNTLINLYCKEGKLEAA 169 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+.+.+.+++..-|..++.++.+-...+..
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 88877888999999999988776444433
No 367
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.84 E-value=23 Score=31.15 Aligned_cols=89 Identities=19% Similarity=0.076 Sum_probs=58.1
Q ss_pred HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHH
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (319)
.-.|+...|.+.+............+....+.....+.|..-.|-.++.+..... ...+.++..+.+++.-..++++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3457777777777766554222233344556666666777777777777766543 334556677777777778888888
Q ss_pred HHHHHHHhcC
Q 020976 206 LHLEYMNKIG 215 (319)
Q Consensus 206 ~~~~~~~~~~ 215 (319)
+.|+...+..
T Consensus 697 ~~~~~a~~~~ 706 (886)
T KOG4507|consen 697 EAFRQALKLT 706 (886)
T ss_pred HHHHHHHhcC
Confidence 8888777653
No 368
>PRK09462 fur ferric uptake regulator; Provisional
Probab=78.72 E-value=8.5 Score=27.06 Aligned_cols=60 Identities=18% Similarity=0.103 Sum_probs=34.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 36 LQKHGFVPELVTYNILIKGLCKA-GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+.+.|++++..= ..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445566544332 3344444443 35667777777777766666666655556666666643
No 369
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.61 E-value=19 Score=25.29 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 020976 31 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 94 (319)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (319)
++...+.+.|++++.. =..++..+...++.-.|.++++.+.+.++..+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445566677665443 24456666667677788888888887766666555544555555555
No 370
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.36 E-value=94 Score=32.73 Aligned_cols=148 Identities=7% Similarity=0.004 Sum_probs=90.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 15 IMLNGLCKNRYTDNALRMFRGL----QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
.+..+-.+++.+.+|+..++.- .+. .-....|-.+...|+..++++...-+...-.. +...+.. |...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-il~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-ILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-HHHH
Confidence 4445666788899999998883 221 11233445555589999999988877764221 2222333 3345
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH-HHHHHHhcCCHHHH
Q 020976 91 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT-LINLYCKEGKLEAA 169 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a 169 (319)
...|+++.|...|+.+.+.+ ++...+++-++......|.++.+....+-.... ..+....++. =+.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 67899999999999999885 445667777777766677777766655544433 1222222222 23333555666555
Q ss_pred HHH
Q 020976 170 YLL 172 (319)
Q Consensus 170 ~~~ 172 (319)
...
T Consensus 1538 e~~ 1540 (2382)
T KOG0890|consen 1538 ESY 1540 (2382)
T ss_pred hhh
Confidence 544
No 371
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.34 E-value=8.7 Score=20.82 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=28.4
Q ss_pred HHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976 260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294 (319)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (319)
...+.|-.+++..++++|.+.|+..++..+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34466778889999999999999988888887765
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.17 E-value=24 Score=25.81 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=11.2
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 020976 89 CCFRNRKYKLGLEILSAMKR 108 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~ 108 (319)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555554
No 373
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.66 E-value=33 Score=27.16 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=32.2
Q ss_pred HHHHHHHcCchHHHHHHHHHHHhCCCccChhhH-------HHHHHHHHhcCCHHHHHHHHH
Q 020976 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY-------NTLINLYCKEGKLEAAYLLLD 174 (319)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~ 174 (319)
+.+-..+.+++++|+..+.++...|+..+..+. ..+...|...|++...-+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 445556667777777777777777766554433 344555566666555444443
No 374
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.80 E-value=43 Score=28.01 Aligned_cols=174 Identities=12% Similarity=-0.005 Sum_probs=93.2
Q ss_pred ccHHHHHHHHHHcCchHHHHHHHHHHHhC--CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCc
Q 020976 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---------GFECD 184 (319)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 184 (319)
..+.-+...|..+|+++.|++.+.+...- .....+..|..+|....-.|+|.....+..+.... .+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 34566777888899999999999886542 12234455667777777788887777776666543 12233
Q ss_pred HHhHHHHHHHHhccCChhHHHHHHHHHHhc--C----CCCChhhHHHHHHHHHhcCCHHHHHHH-----HHhhccCCchh
Q 020976 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKI--G----FDSNLEAYNCIVDRLGKDGKIDHAINV-----FESMEVKDSFT 253 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~~ 253 (319)
...+..+...+. +++..|.+.|-..... + +.|...+....+.+++--++-+--+.+ |+.+.+..|..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 334444444333 3556555554332211 1 123332323333444433333222222 33333446666
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc-----CCccCHHHHHHHH
Q 020976 254 YSSMVHNLCKAKRLPSASKLLLSCLKS-----GVRILKSAQKAVV 293 (319)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 293 (319)
+..+...|. +++...+++++++... -+.|...+...+|
T Consensus 309 r~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 309 REILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred HHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 666665553 4677788888776543 2344444444444
No 375
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.20 E-value=12 Score=21.59 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 020976 156 LINLYCKEGKLEAAYLLLDEM 176 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~ 176 (319)
++.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 376
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.54 E-value=47 Score=27.82 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSG--HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
..+.-+...|...|+++.|.+.|.+.+.-- .+-.+..|-.+|..-.-.|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356778888888999999999998865421 1113445666677777788888887777776643
No 377
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=75.21 E-value=4.5 Score=27.62 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=24.7
Q ss_pred cCChhHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976 264 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296 (319)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (319)
.|.-..|..+|++|++.|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4556779999999999999988 477777654
No 378
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.03 E-value=64 Score=29.14 Aligned_cols=164 Identities=12% Similarity=0.123 Sum_probs=88.0
Q ss_pred HHHHHHHHh-hcCChHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCChhHHHHHHHHHhhCC----CCCChhh
Q 020976 13 FNIMLNGLC-KNRYTDNALRMFRGLQKHGFVPELV-----TYNILIKGLCKAGRLRTARWILKELGDSG----HAPNAIT 82 (319)
Q Consensus 13 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 82 (319)
+-.+...+. ...+++.|...+++.....-.++.. +-..++..+.+.+... |...+++..+.- ..+-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 444555554 5678888888888765432222222 2234556666655544 888877765521 1111222
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCcccHHHHHHHHH--HcCchHHHHHHHHHHHhCC---------Cc
Q 020976 83 YTTI-MKCCFRNRKYKLGLEILSAMKRKG---YTFDGFGYCTVIAAFV--KIGRLKEATDYMEQMVTDG---------VQ 147 (319)
Q Consensus 83 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~ 147 (319)
+..+ +..+...+++..|.+.++.+.... ..|-..++..++.+.. +.+..+++.+.++++.... -.
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 3333 222323368888888888776532 1333344444444433 3455667777776664321 12
Q ss_pred cChhhHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 020976 148 LDIVSYNTLINLY--CKEGKLEAAYLLLDEME 177 (319)
Q Consensus 148 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 177 (319)
|...+|..++..+ ...|+++.+...++++.
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666666554 34667666666665543
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.60 E-value=66 Score=29.07 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=105.8
Q ss_pred HHHHHHHHHHh-CCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHhhCCCCCChh-----hHHHHHHHHHhcCChhH
Q 020976 28 NALRMFRGLQK-HGFVPE--LVTYNILIKGLC-KAGRLRTARWILKELGDSGHAPNAI-----TYTTIMKCCFRNRKYKL 98 (319)
Q Consensus 28 ~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~ 98 (319)
.|+..++.+.+ ..++|. ..++-.+...+. ...+++.|...+++.....-.++.. +-..+++.+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555666653 333332 345566666666 6789999999999876533223322 2234566666666555
Q ss_pred HHHHHHHHHhCCCC----CCcccHHHH-HHHHHHcCchHHHHHHHHHHHhCC---CccChhhHHHHHHHHH--hcCCHHH
Q 020976 99 GLEILSAMKRKGYT----FDGFGYCTV-IAAFVKIGRLKEATDYMEQMVTDG---VQLDIVSYNTLINLYC--KEGKLEA 168 (319)
Q Consensus 99 a~~~~~~~~~~~~~----~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~ 168 (319)
|...+++..+.--. +-...|..+ +..+...+++..|.+.++.+...- ..|...++-.++.+.. ..+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888887654211 112222222 222223379999999998877641 2334444555555544 4555677
Q ss_pred HHHHHHHHHHcC---------CCCcHHhHHHHHHHHh--ccCChhHHHHHHHHH
Q 020976 169 AYLLLDEMEKQG---------FECDKYTHTILIDGLC--KAGNIKGARLHLEYM 211 (319)
Q Consensus 169 a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 211 (319)
+.+.++.+.... ..|...+|..+++.++ ..|+++.+...++.+
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 877777764321 1334556777766654 567766776665554
No 380
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.31 E-value=35 Score=25.84 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 290 KAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 290 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
-.+.....+.|+.++|.++|.++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 33445666777777777777776544
No 381
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.06 E-value=7.6 Score=30.76 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292 (319)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (319)
.-|+..|..-.+.||+++|+.++++..+.|+.--..+|...
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34677888888888888888888888888877555555443
No 382
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.99 E-value=66 Score=28.78 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=24.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
+......++..|.+.|-.+.|.++.+.+... ...-|..-+..+.+.|+....-.+...+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445566666677777777776666655433 22334455555566666555554444443
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.24 E-value=54 Score=27.48 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCChhHHHHHHHHHhhC
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELV--TYNILIKGLCK--AGRLRTARWILKELGDS 74 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 74 (319)
..+.+.+++..|.++|+.+.+. ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888888776 554443 45555555554 34567788888777653
No 384
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=72.99 E-value=16 Score=21.42 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=24.1
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 56 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 56 (319)
|+...++.++...++..-.++++..+++..++|.- +..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 44455555555555555555555555555555442 4444444444443
No 385
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=72.94 E-value=37 Score=30.51 Aligned_cols=90 Identities=16% Similarity=0.270 Sum_probs=52.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHhhCCCCCChhhHHHH
Q 020976 15 IMLNGLCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLR------TARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+|+.+|...|++.++.++++.+...+ -+.=...||..++...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888887776542 2223456777777777777653 2333333333 34466677777
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 020976 87 MKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~ 107 (319)
+.+-..--+-...+-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 665444322233333444444
No 386
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.83 E-value=47 Score=26.52 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh-----cCCCCChhh
Q 020976 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK-----IGFDSNLEA 222 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 222 (319)
+++...+.|..+|.+.+|.++.+..+... +.+...+..++..+...|+--.+..-++++.+ .|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34556678888888999988888887764 33677788888888888887777777766643 255554433
No 387
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.65 E-value=10 Score=30.03 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 188 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (319)
|+..|....+.||+++|+.++++.++.|..--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456777777777777777777777777765433343
No 388
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.45 E-value=60 Score=27.65 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 020976 224 NCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 282 (319)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 282 (319)
..|+.-|...|+..+|.++++++.-| ...++.+++.+.-+.|+-+..+.+++.+.+.|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 44666677777777888777777666 445677777777777776667777776655543
No 389
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.13 E-value=79 Score=28.84 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=66.9
Q ss_pred CChhHHHHHHHHHHhc-CCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHH
Q 020976 199 GNIKGARLHLEYMNKI-GFDSNL--EAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKL 273 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 273 (319)
.+.+.|...+...... .+.+.. .+...+.......+..++|...+...... +......-+..-...++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 4567777777776443 222221 22333333333333255666666655433 445555555555678888888888
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
+..|... ..-...-..-+.+++...|+.++|..+|+++.
T Consensus 335 i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 335 LARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8877543 22233444456677777899999988888863
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.75 E-value=5.6 Score=27.19 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=22.9
Q ss_pred HHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHH
Q 020976 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 159 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
....|.-.+|-.+|+.|.+.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 33456667788888888888877765 5666654
No 391
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.50 E-value=62 Score=27.38 Aligned_cols=79 Identities=20% Similarity=0.059 Sum_probs=37.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh--hHHHHHHHHHh
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVT--YNILIKGLCKAGRLRTARWILKELGDSGHAPNAI--TYTTIMKCCFR 92 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 92 (319)
+...++.|+.+- ++.+.+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+.
T Consensus 6 L~~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHH
Confidence 334455566544 344445666665432 23344455566666533 3344445444432 11233444556
Q ss_pred cCChhHHHHHH
Q 020976 93 NRKYKLGLEIL 103 (319)
Q Consensus 93 ~~~~~~a~~~~ 103 (319)
.|+.+.+..++
T Consensus 78 ~g~~~~v~~Ll 88 (413)
T PHA02875 78 EGDVKAVEELL 88 (413)
T ss_pred CCCHHHHHHHH
Confidence 67765544443
No 392
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.37 E-value=62 Score=27.36 Aligned_cols=195 Identities=15% Similarity=0.110 Sum_probs=94.3
Q ss_pred CCCCCcchHh--HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 020976 3 CGDLTPCTAT--FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV--TYNILIKGLCKAGRLRTARWILKELGDSGHAP 78 (319)
Q Consensus 3 ~~g~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (319)
+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.-.......
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 98 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVF 98 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccc
Confidence 4566665433 234555666677754 445555666655432 12234555667888877665554321110011
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHHcCchHHHHHHHHHHHhCCCccC---hhhH
Q 020976 79 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG--YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD---IVSY 153 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 153 (319)
+..- .+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..++ +.|..++ ..-.
T Consensus 99 ~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~ 169 (413)
T PHA02875 99 YKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGC 169 (413)
T ss_pred cCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCC
Confidence 1111 2233344455665 45555566665554322 223455666777766554444 3333322 2222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh---HHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 020976 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT---HTILIDGLCKAGNIKGARLHLEYMNKIGFDSN 219 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (319)
+.+ ...+..|+.+ +.+.+.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..++
T Consensus 170 TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n 229 (413)
T PHA02875 170 TPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCN 229 (413)
T ss_pred CHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcc
Confidence 333 3334456544 4445566666655432 1234443445566543 444455665554
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.10 E-value=43 Score=26.05 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHH----cCC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 255 SSMVHNLCKAKRLPSASKLLLSCLK----SGV-RILKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
-.+...|...|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677778888888888777642 232 234456666777778888888877765544
No 394
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.04 E-value=56 Score=26.66 Aligned_cols=99 Identities=10% Similarity=-0.113 Sum_probs=55.3
Q ss_pred CCCcccHHHHHHHHHHcCc------------hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 112 TFDGFGYCTVIAAFVKIGR------------LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 112 ~~~~~~~~~ll~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
|-|..+|-.++..--..-. .+.-+.+++++.+.+ +.+......++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5567777777754433211 234455666666652 345556666666677776777777777777665
Q ss_pred CCCCcHHhHHHHHHHHhc---cCChhHHHHHHHHHH
Q 020976 180 GFECDKYTHTILIDGLCK---AGNIKGARLHLEYMN 212 (319)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 212 (319)
... +...|...+..... .-.++....+|.+..
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 322 45555555554433 224555555555543
No 395
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.46 E-value=57 Score=26.58 Aligned_cols=118 Identities=10% Similarity=-0.039 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH---cCchHHHHHHH
Q 020976 62 RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK---IGRLKEATDYM 138 (319)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~ 138 (319)
+.-+.++++..+.+. -+...+..++..+.+..+.+...+-++++.... +-+...|...|..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 455667777666633 356666777777777777777777777777663 3355566666654433 22455555555
Q ss_pred HHHHhC------CC----ccC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 020976 139 EQMVTD------GV----QLD-------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181 (319)
Q Consensus 139 ~~~~~~------~~----~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (319)
.+.... +. .+. ...+..+...+...|-.+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 544331 11 001 11233334445567888888888888887654
No 396
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=69.98 E-value=56 Score=26.26 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHccCChhHH
Q 020976 252 FTYSSMVHNLCKAKRLPSA 270 (319)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a 270 (319)
..|..++.+++.+|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3667777777777765543
No 397
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.61 E-value=49 Score=25.50 Aligned_cols=138 Identities=14% Similarity=0.214 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 020976 48 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (319)
....+..|.+.-++.-|-...++..+ | ..+-..+++ |.+..+.+-..++.+-....+++-+......++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 34445555555555555554444443 1 112222222 444444433334444444445555554444443 345
Q ss_pred cCchHHHHHHHHHHHhC-C-----------CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 020976 128 IGRLKEATDYMEQMVTD-G-----------VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 195 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
.||..+|+.-++.-... | -.|.+.....++..|. .+++++|.+.+.++.+.|..|.. ..+.+.+.+
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 57777777666654332 1 2466666677776554 46789999999998888887544 344555554
No 398
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.65 E-value=52 Score=25.38 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=60.7
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh----------------ccCCchhHHHHH
Q 020976 195 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM----------------EVKDSFTYSSMV 258 (319)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------------~~~~~~~~~~l~ 258 (319)
|.+..+.+-..++.+-....+++-+...+..++ +...|+..+|+..++.- ..|.|.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344444444444444444445555555555544 34567776666665543 234566666677
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 020976 259 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299 (319)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (319)
..+. .+++++|.+.++++.+.|..|.. ..+.+.+.+...
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~ 285 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVVKNM 285 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhc
Confidence 6654 46789999999999999998753 445555555433
No 399
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.45 E-value=27 Score=21.94 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=15.3
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976 57 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
..|+.+.|.+++..+. +| +..|..++.++-..|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEH 81 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCc
Confidence 3345555555555554 32 1234444444444443
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=68.31 E-value=58 Score=29.37 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=51.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhH------HHHHHHHHHhCCCCCCcccHHHH
Q 020976 50 ILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKL------GLEILSAMKRKGYTFDGFGYCTV 121 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
+|+.+|...|++.++.++++.+... |-+.-...+|..++...+.|.++- +.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998763 333446678999999999987643 333444333 34466666666
Q ss_pred HHHH
Q 020976 122 IAAF 125 (319)
Q Consensus 122 l~~~ 125 (319)
+.+.
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 6543
No 401
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=67.91 E-value=52 Score=25.09 Aligned_cols=100 Identities=10% Similarity=0.099 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---ChhhHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc
Q 020976 42 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP---NAITYT--TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF 116 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (319)
.+...-+|.|+--|.-...+.+|.+.|..- .|+.| +..+++ .-|+.....|+.+.|.+....+...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 344555555555555555555555555442 23333 333332 34455667777777777766665432222322
Q ss_pred cHHHHHH----HHHHcCchHHHHHHHHHHHh
Q 020976 117 GYCTVIA----AFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 117 ~~~~ll~----~~~~~~~~~~a~~~~~~~~~ 143 (319)
.+-.|.. -..+.|..++|+++.+.-..
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 2222211 23455666677666655443
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.81 E-value=82 Score=27.32 Aligned_cols=275 Identities=12% Similarity=-0.004 Sum_probs=135.9
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH--HHHHHHHhhCCCCCC-----------hhhHHHHH
Q 020976 21 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA--RWILKELGDSGHAPN-----------AITYTTIM 87 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~~-----------~~~~~~l~ 87 (319)
...+.++...+.+..+...|.......+|.-...|.+.|....- ++-++.+...-..|+ ...+....
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 34678999999999999888776666788888888888765432 222333322111111 11111111
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHHcCchHHHHHHH---HHHHhCC-C------------
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFD-----GFGYCTVIAAFVKIGRLKEATDYM---EQMVTDG-V------------ 146 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~---~~~~~~~-~------------ 146 (319)
-.+.....+..|+++...+...- .|= ..........+....+.++|+.++ .++...+ .
T Consensus 108 Vi~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~ 186 (696)
T KOG2471|consen 108 VIFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL 186 (696)
T ss_pred eeeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh
Confidence 22333445556666555544321 110 001112223344455556665544 3443321 0
Q ss_pred ----ccChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH-HHHHHHhccCChhHHHHHHH
Q 020976 147 ----QLDIVSYN------------TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT-ILIDGLCKAGNIKGARLHLE 209 (319)
Q Consensus 147 ----~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~ 209 (319)
+|+...-. .-+.++....+...+..-.+.... ..-+...+. .--..+.-.|++.+|.+++.
T Consensus 187 ~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~ 264 (696)
T KOG2471|consen 187 LKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALLLKSQLEYAHGNHPKAMKLLL 264 (696)
T ss_pred cccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHHHHHHHHHHhcchHHHHHHHH
Confidence 11111111 111222222222222222221111 111211111 11223455688888888775
Q ss_pred HHHh---cCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHhhcc-----------C----------CchhHHHHHHH
Q 020976 210 YMNK---IGFDSNL-----EAYNCIVDRLGKDGKIDHAINVFESMEV-----------K----------DSFTYSSMVHN 260 (319)
Q Consensus 210 ~~~~---~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~----------~~~~~~~l~~~ 260 (319)
..-- .|...++ ..++.+...+.+.|.+..+..+|.+... + .........-.
T Consensus 265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~ 344 (696)
T KOG2471|consen 265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLL 344 (696)
T ss_pred hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHH
Confidence 4321 1222221 2234455555566666666666655432 1 11222223446
Q ss_pred HHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 020976 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 299 (319)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (319)
|...|++-.|.+.|.+.... ..-++..|..+..+|...
T Consensus 345 ~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 78899999999999988765 556889999999999653
No 403
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.75 E-value=88 Score=27.68 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=56.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHH---HHHHhhccC--CchhHHHHHHHH-----HccC
Q 020976 197 KAGNIKGARLHLEYMNKIGFDSNL-EAYNCIVDRLGKDGKIDHAI---NVFESMEVK--DSFTYSSMVHNL-----CKAK 265 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~--~~~~~~~l~~~~-----~~~~ 265 (319)
..|++..|..+++.+.+.- |+. ..-..-+....+.|+.+.+. +++...... +......+.--+ .-.+
T Consensus 378 ~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred hhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 4567777777777776642 332 22222233344566666665 333333222 333333333222 2356
Q ss_pred ChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcC
Q 020976 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300 (319)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (319)
+.+.|..++.++.+. .+++...|..+++-+...+
T Consensus 456 d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 456 DADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 778888888888775 5556777777777665544
No 404
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=67.35 E-value=21 Score=23.68 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=23.4
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 60 (319)
++..+...+..-.|.++++.+.+.+..++..|....+..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555566666666555544555554445555555544
No 405
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=67.01 E-value=66 Score=25.92 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHH----------ccCChhHHHHHH
Q 020976 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLC----------KAKRLPSASKLL 274 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~ 274 (319)
.++|+.+.+.++.|.-..+..+.-.+.+.=.+...+.+|+.+..... -|..++..|+ -.|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34556666666666666666666666666666666666666554311 1333333332 246666666655
Q ss_pred H
Q 020976 275 L 275 (319)
Q Consensus 275 ~ 275 (319)
+
T Consensus 342 Q 342 (370)
T KOG4567|consen 342 Q 342 (370)
T ss_pred h
Confidence 4
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.69 E-value=30 Score=21.94 Aligned_cols=17 Identities=24% Similarity=0.091 Sum_probs=8.3
Q ss_pred HHHhcCCHHHHHHHHHH
Q 020976 295 GLRHSGCRREAKKIQSK 311 (319)
Q Consensus 295 ~~~~~g~~~~a~~~~~~ 311 (319)
.....|++++|...+++
T Consensus 50 ~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEE 66 (94)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 34445555555555444
No 407
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=66.21 E-value=47 Score=24.01 Aligned_cols=55 Identities=5% Similarity=-0.027 Sum_probs=24.0
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----CchhHHHHHHHHHccCCh
Q 020976 212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRL 267 (319)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~ 267 (319)
.+.|++++..-. .++..+...++.-.|.++++.+.+. +..|...-+..+...|-.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344554443222 3334444444444555665555433 233333334444444443
No 408
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.85 E-value=61 Score=25.10 Aligned_cols=84 Identities=13% Similarity=-0.067 Sum_probs=47.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCCH
Q 020976 159 LYCKEGKLEAAYLLLDEMEKQGFECDK-YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY-NCIVDRLGKDGKI 236 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 236 (319)
.|.....++.|...|.+.+.. .|+. ..|+.-+.++.+..+++.+..--.+..+. .|+..-- ..+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 344555677777766666553 4444 33444555566677777776655555543 4444322 2333444556667
Q ss_pred HHHHHHHHhh
Q 020976 237 DHAINVFESM 246 (319)
Q Consensus 237 ~~a~~~~~~~ 246 (319)
++|+..+.+.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 7777766655
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.44 E-value=32 Score=21.81 Aligned_cols=54 Identities=13% Similarity=-0.003 Sum_probs=28.5
Q ss_pred HhhcCChHHHHHHHHHH----HhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976 20 LCKNRYTDNALRMFRGL----QKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGD 73 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~----~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
..+.|++..|.+-+.+. ...+..+. ....-.+.......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777775544443 33322221 12223344455566777777777776654
No 410
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=65.38 E-value=20 Score=24.03 Aligned_cols=46 Identities=24% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 020976 15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 60 (319)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4455555555566666666666665555555544444444544443
No 411
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=65.35 E-value=68 Score=25.83 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc----------cCChhHH
Q 020976 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK----------AGNIKGA 204 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 204 (319)
.++++.+...++.|.-.+|..+.-.+.+.=.+...+.+++.+.. |+.-|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45777777778888888888777777777788888888888764 33335555555543 3777777
Q ss_pred HHHHH
Q 020976 205 RLHLE 209 (319)
Q Consensus 205 ~~~~~ 209 (319)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 76664
No 412
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=64.96 E-value=50 Score=23.88 Aligned_cols=60 Identities=7% Similarity=-0.074 Sum_probs=35.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 36 LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+.+.|++++..- ..++..+...++.-.|.++++.+.+.+..++..|...-|..+...|-+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 445566644433 244444555556667777777777776666666655555666666543
No 413
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=64.67 E-value=44 Score=23.14 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 44 ELVTYNILIKGLCKAGR---LRTARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
+..+--.+..++.+..+ ..+.+.+++++.+.. ..-......-|.-++.+.++++.++++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 33444444444444433 334445555555411 1112233333444555556666666666555544
No 414
>PRK12798 chemotaxis protein; Reviewed
Probab=64.42 E-value=88 Score=26.46 Aligned_cols=50 Identities=8% Similarity=0.031 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH-HcCchHHHHHHHHHHHh
Q 020976 94 RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV-KIGRLKEATDYMEQMVT 143 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 143 (319)
|+..++.+.+..+.....++....+..|+.+-. ...++..|+++|+...-
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL 176 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL 176 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 445555555555444444444444444444332 23345555555554443
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.39 E-value=88 Score=26.48 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC-----------CchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 224 NCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
..+++..+-.|++..|+++++.+.-. ...++-.+.-+|.-.+++.+|.+.|...+-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888765422 445666677777888888888888877653
No 416
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.49 E-value=5.4 Score=32.14 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=21.8
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 020976 58 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (319)
.|.++.|++.|...+... ++....|..-..++.+.+.+..|++=+.....
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc
Confidence 344555555554444432 22333344444444444444444444444443
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.26 E-value=47 Score=25.84 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCcHHhHHHHHHHHhccCChhHHHHHHHHHH
Q 020976 152 SYNTLINLYCKEGKLEAAYLLLDEMEK----QGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
..-.+..-|...|++++|.++|+.+.. .|. .+...+...+..++...|+.+....+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344567778888888888888887742 232 3445566777777788888887776655543
No 418
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=62.95 E-value=42 Score=22.24 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=12.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCC
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHG 40 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~ 40 (319)
++.+.++...++|+++++.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344445555555555555555544
No 419
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.73 E-value=70 Score=24.77 Aligned_cols=83 Identities=11% Similarity=-0.037 Sum_probs=41.9
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHcCchH
Q 020976 55 LCKAGRLRTARWILKELGDSGHAPNA-ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAFVKIGRLK 132 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~ 132 (319)
|.....+..|...|.+... +.|+. .-|..-+.++.+..+++.+..--.+..+. .|+. ...-.+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 3334455666665555444 24444 33455555666666666665554444443 2332 22223334445555666
Q ss_pred HHHHHHHHH
Q 020976 133 EATDYMEQM 141 (319)
Q Consensus 133 ~a~~~~~~~ 141 (319)
.|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666666655
No 420
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.90 E-value=48 Score=22.57 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHcCCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 268 PSASKLLLSCLKSGVRI-LKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 268 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
+.+.++|+.|...|+-- -+..|......+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 38899999998887654 456778888888999999999999875
No 421
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=61.60 E-value=29 Score=23.25 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=35.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCH
Q 020976 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (319)
..++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345666677777888999999999888888888777777888877754
No 422
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=61.59 E-value=35 Score=22.58 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=26.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCC
Q 020976 257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301 (319)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (319)
++..+...+..-.|.++++++.+.+..++..|....++.+.+.|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555666677776666655566665555666666554
No 423
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.51 E-value=74 Score=24.60 Aligned_cols=237 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCcccHHHHHHHHHHcCchHHHHHH
Q 020976 63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-----RKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137 (319)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 137 (319)
++.++..+..+......... .+.-.+.+++|.++|.+.- ......-...|.-....+.+.|+-.+|-..
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~ 76 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATT 76 (288)
T ss_pred cHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHH
Q ss_pred HHHHHhC----CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 138 MEQMVTD----GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 138 ~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
|-++-.. ....-+.....-|..|...|++..|-.....+-+- ...+..-+...|..|-..+++-...+.-...-+
T Consensus 77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCc
Q 020976 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 283 (319)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (319)
.+.-+...-...+++.+|+++|+++... -...+-.-.-++.-..+.-.+...+++..+..+.
T Consensus 156 --------C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 156 --------CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 284 ILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
-+..-=..++.-+...=+-+....+-+.+++
T Consensus 228 F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 228 FTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
No 424
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.06 E-value=80 Score=24.85 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=18.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 218 SNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
.++.....+...|.+.|++.+|+..|-.-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 345666777777888888888877765443
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.82 E-value=65 Score=23.73 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=12.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 020976 157 INLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
+-.|.+.|.+++|.++++....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445566666666666666554
No 426
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.82 E-value=1e+02 Score=25.95 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=37.5
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChh--hHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIV--SYNTLINLYCK--EGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 179 (319)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445678888888888888876 555444 34455555543 55677888888877654
No 427
>PRK09462 fur ferric uptake regulator; Provisional
Probab=60.72 E-value=56 Score=22.95 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (319)
.-.|.++++.+.+.+...+..|.-.-|..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4445555555554443333333333344444444
No 428
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=60.15 E-value=69 Score=23.82 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC------------------CchhHHHHHHHHHccCChhHHHHHHH
Q 020976 224 NCIVDRLGKDGKIDHAINVFESMEVK------------------DSFTYSSMVHNLCKAKRLPSASKLLL 275 (319)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (319)
.+++..|-+..++.+.+++++.+... .-...|.....+.+.|..+.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34555666666677777766655422 11234555566666777777776665
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.66 E-value=45 Score=28.52 Aligned_cols=105 Identities=11% Similarity=0.006 Sum_probs=65.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC
Q 020976 51 LIKGLCKAGRLRTARWILKELGDSGHAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (319)
-+.-+.+.+.++.|..++.+..+. .||.. .|..-..++.+.+++..|+.=+.+..+.. +--...|..-..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 344556778888999999888874 45443 44444477888888888888777777664 222223333334444556
Q ss_pred chHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 020976 130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLY 160 (319)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
.+.+|+..|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 66677777766655 356666555555444
No 430
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.71 E-value=30 Score=19.27 Aligned_cols=35 Identities=9% Similarity=-0.012 Sum_probs=22.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292 (319)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (319)
.+.-++.+.|++++|.+..+.+++. .|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 3455777888888888888888875 5655444444
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.18 E-value=37 Score=28.98 Aligned_cols=106 Identities=12% Similarity=0.009 Sum_probs=72.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPEL-VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 94 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (319)
-...+...+.++.|+.++.+..+. .||- ..|..-..++.+.+++..|+.=+.++.+..+. -...|..-..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 345667788999999999999885 4543 34444447888999999998888888775321 2334444445666667
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976 95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (319)
.+.+|+..|+..... .|+..-....+.-|-
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 788888888777655 666666655555443
No 432
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=58.13 E-value=26 Score=20.59 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
|....++.++..+++..-.+.++..+.+....|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4555667777777777677777777777776664 355566555555554
No 433
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.00 E-value=1.8e+02 Score=27.97 Aligned_cols=243 Identities=11% Similarity=-0.010 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (319)
+|+.+-...+..+.+.+..+ +...+..+... ++...-...+.++.+.+........+..+.+. +|+.+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 57777777777777777644 54555555542 34444445555554443222222333333332 4555555566
Q ss_pred HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
..+...+..+ ...+.. ... .++...-...+.++.+.+..+. +.... -.++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcccc
Confidence 6665443221 122222 332 2466666667777776655432 22222 2445556666666766666543
Q ss_pred H-HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 203 G-ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN-VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 203 ~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
. +...+..+.+ .++...-...+.++...|..+.+.. +...+..++..+-...+.++...+. +++...+..+++
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~- 848 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT- 848 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-
Confidence 3 3344444443 3566777777888888887655433 3444445566666667777777665 456666666654
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 281 GVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 281 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
.|+...-...+.++.+.+....+...+..
T Consensus 849 --D~~~~VR~~A~~aL~~~~~~~~a~~~L~~ 877 (897)
T PRK13800 849 --DPHLDVRKAAVLALTRWPGDPAARDALTT 877 (897)
T ss_pred --CCCHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 35666666777777665333344444443
No 434
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.62 E-value=1.5e+02 Score=27.07 Aligned_cols=175 Identities=11% Similarity=-0.018 Sum_probs=85.8
Q ss_pred CchHHHHHHHHHHHhC-CCccC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHH
Q 020976 129 GRLKEATDYMEQMVTD-GVQLD--IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (319)
.+.+.|...+...... +..+. ...+..+.......+..+++...++...... .+......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 4556666666665332 11111 1122233222222222445555555433221 12233333344444667777776
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhH-------------------------------
Q 020976 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTY------------------------------- 254 (319)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------- 254 (319)
..+..|.... .-...-.-.+.+++...|+.++|...|+.+... ..-|
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 6666664432 223344555666666677777777777665322 0000
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 310 (319)
-.-+..+...|+...|...+..+... .+......+.....+.|..+.+.....
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 11123344556666676666666553 233444555555556676666655443
No 435
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.55 E-value=1.3e+02 Score=25.72 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 020976 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDG 194 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (319)
++.+.|+.++..|.+.|..|....-..++.+
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4555555555555555544444333333333
No 436
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=56.03 E-value=93 Score=24.05 Aligned_cols=56 Identities=16% Similarity=0.031 Sum_probs=25.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHH
Q 020976 51 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEILSAM 106 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 106 (319)
++..+-+.++++++.+.++++...+...+..--+.+-.+|-. .|....+++++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 344444555555555555555555444444444444444422 13333344444433
No 437
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.17 E-value=1.4e+02 Score=25.93 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH---------HhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh
Q 020976 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK---------YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL 220 (319)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (319)
..+...++-+-.-.|++.+|++-+.+|.+.--.... .....+...++..+.++.|+.-|....+.--..|.
T Consensus 323 m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl 402 (629)
T KOG2300|consen 323 MILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL 402 (629)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH
Q ss_pred hhH--HHHHHHHHhcCCHHHHHHHHHhhccC----------CchhHHHHHHHHHccCChhHHHHHHHHHHHc-----CCc
Q 020976 221 EAY--NCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-----GVR 283 (319)
Q Consensus 221 ~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~ 283 (319)
..+ ..+.-.|.+.|+.+.-.++++.+..+ -...+-.-.-.....+++.+|...+++-++. ..+
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r 482 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR 482 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976 284 ILKSAQKAVVDGLRHSGCRREAKKIQS 310 (319)
Q Consensus 284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~ 310 (319)
...-....+-..+...|+..++.+...
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccc
No 438
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=54.88 E-value=38 Score=28.56 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=47.2
Q ss_pred HHhHHHHHHHHhccCChhHHHHHHHHHHhc------CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKI------GFD-SNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
..+...+++..+-.||+..|.++++.+.-. .++ -...++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889999999999999876422 111 234566677788899999999999998654
No 439
>PRK12798 chemotaxis protein; Reviewed
Probab=54.81 E-value=1.3e+02 Score=25.46 Aligned_cols=189 Identities=14% Similarity=0.053 Sum_probs=110.3
Q ss_pred cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHc--CCCCcHHhHHHHHHHHhccCChhHH
Q 020976 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC-KEGKLEAAYLLLDEMEKQ--GFECDKYTHTILIDGLCKAGNIKGA 204 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 204 (319)
.|+..++.+.+..+.....++....+-.|+.+-. ...+..+|+++|+...-. |--........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5888999999988887767777777877776654 456788899999887543 1111234455556666788888877
Q ss_pred HHHHHHHHhc-CCCCChh-hHHHHHHHHHhcC---CHHHHHHHHHhhccC-CchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976 205 RLHLEYMNKI-GFDSNLE-AYNCIVDRLGKDG---KIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 205 ~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
..+-...... ...|-.. .+..+...+.+.+ ..+....++..|... -...|..+.+.-...|+.+-|...-.+.+
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 6655444332 2222222 2222333333332 344455555555443 44578888888888888888777777766
Q ss_pred HcCCccCHH-HHHHHHHH--HHhcCCHHHHHHHHHHHHhhh
Q 020976 279 KSGVRILKS-AQKAVVDG--LRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 279 ~~~~~~~~~-~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~ 316 (319)
......+.. .-..+-.+ -.-..++++|.+.++.+....
T Consensus 285 ~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 285 KLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 543221111 11111111 223555777777766665443
No 440
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.71 E-value=1.6e+02 Score=26.28 Aligned_cols=167 Identities=11% Similarity=0.013 Sum_probs=97.2
Q ss_pred cCChhHHHHHHHHHHhCC--------CCCCcccHHH---HHHHHHHcCchHHHHHH-------HHHHHhCCCccC-----
Q 020976 93 NRKYKLGLEILSAMKRKG--------YTFDGFGYCT---VIAAFVKIGRLKEATDY-------MEQMVTDGVQLD----- 149 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~---ll~~~~~~~~~~~a~~~-------~~~~~~~~~~~~----- 149 (319)
...++++...|......- +..++..... +...+...|+.+.+-.+ |+.+....+.|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 344666776666555431 1122333344 44556677776655444 444444333222
Q ss_pred --------hhhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHh-ccCChhHHHHHHHHHHhcC--
Q 020976 150 --------IVSYNTL---INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC-KAGNIKGARLHLEYMNKIG-- 215 (319)
Q Consensus 150 --------~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~-- 215 (319)
-..|-++ ++.+.+.|.+..|+++-+.+....+.-|+.....+|..|+ ++.+++-.+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 1222222 4556778999999999998888766557777788888875 6678888888887775432
Q ss_pred -CCCChhhHHHHHHHHHhcCC---HHHHHHHHHhhccCCchhHHHHHH
Q 020976 216 -FDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVKDSFTYSSMVH 259 (319)
Q Consensus 216 -~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~l~~ 259 (319)
.-|+..--.+++..|..... -..|...+.+....-+.+.+.|+.
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld 458 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLSELLD 458 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 23554444555666665544 455666666655544444444443
No 441
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=54.66 E-value=51 Score=20.65 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 020976 31 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 72 (319)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (319)
++|+-....|+..|...|..++....-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555554444444444444444443
No 442
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.56 E-value=1.8e+02 Score=26.96 Aligned_cols=272 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVP---ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (319)
++-+.+.+.+++|+++.+..... .| -.......+..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC----------------CCccChhhHHHHH
Q 020976 94 RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----------------GVQLDIVSYNTLI 157 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------~~~~~~~~~~~l~ 157 (319)
++ -..++.-+....-..++..|..++..+.. .+...-.++..+.... ...-+...-..|+
T Consensus 437 ~~---l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQ---LTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cc---cchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (319)
..|...+++..|..++-..++. .++..-.+..-++........++....+ ..+..+....+.-
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~~----------~vf~lI~k~nL~d~i~~~Iv~Lmll~sk-------ka~~lLldn~d~i 575 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQDK----------DVFDLIKKHNLFDQIKDQIVLLMLLDSK-------KAIDLLLDNRDSI 575 (846)
T ss_pred HHHHHccChHHHHHHHHhccCh----------HHHHHHHHHhhHHHHHHHHHHHHccchh-------hHHHHHhhccccC
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHccC------ChhHHHHHHHHHHHcCCcc-----CHHHHHHHHHHHHhcCCHHHHH
Q 020976 238 HAINVFESMEVKDSFTYSSMVHNLCKAK------RLPSASKLLLSCLKSGVRI-----LKSAQKAVVDGLRHSGCRREAK 306 (319)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~ 306 (319)
.-.+++.++. .++......+..+.... --+..++++.+.-....-| ........+..|.+.|-++|-.
T Consensus 576 p~a~Vveql~-~~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~V 654 (846)
T KOG2066|consen 576 SPSEVVEQLE-DNPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELV 654 (846)
T ss_pred CHHHHHHHHh-cChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHH
Q ss_pred HHHHHHHhhh
Q 020976 307 KIQSKIRMAK 316 (319)
Q Consensus 307 ~~~~~~~~~~ 316 (319)
-++.+|-+..
T Consensus 655 YlLgrmGn~k 664 (846)
T KOG2066|consen 655 YLLGRMGNAK 664 (846)
T ss_pred HHHHhhcchH
No 443
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.85 E-value=1.5e+02 Score=25.85 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHc--cCChhHHHHHHHHHHHc-CCccCHHHHHHHHHHHHh
Q 020976 225 CIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCK--AKRLPSASKLLLSCLKS-GVRILKSAQKAVVDGLRH 298 (319)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 298 (319)
.+++.+.+.|-..+|...+..+... +...|..+++.-.. .-+...+..+++.|... | .|+..|...+.--..
T Consensus 465 ~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 465 KYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELP 542 (568)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhcc
Confidence 3444444555555555555444322 22333333332111 11244445555554432 3 344455555444445
Q ss_pred cCCHHHHHHHHHH
Q 020976 299 SGCRREAKKIQSK 311 (319)
Q Consensus 299 ~g~~~~a~~~~~~ 311 (319)
.|..+.+-.++.+
T Consensus 543 ~g~~en~~~~~~r 555 (568)
T KOG2396|consen 543 LGRPENCGQIYWR 555 (568)
T ss_pred CCCcccccHHHHH
Confidence 5555555444433
No 444
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.44 E-value=1.5e+02 Score=26.83 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=56.5
Q ss_pred HHcCchHHHHHHHHHHHhCCCccC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQLD------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
.+..++..+.+.|..-... ++.| ...+..+.-+|....+.|.|.+++.+..+...+ ++.+-..+..+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhc
Confidence 3456777777777654432 2222 223566777888889999999999999876543 4455555566667778
Q ss_pred ChhHHHHHHHHHH
Q 020976 200 NIKGARLHLEYMN 212 (319)
Q Consensus 200 ~~~~a~~~~~~~~ 212 (319)
..++|........
T Consensus 443 ~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 443 KSEEALTCLQKIK 455 (872)
T ss_pred chHHHHHHHHHHH
Confidence 8888877766554
No 445
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.28 E-value=23 Score=16.33 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=7.1
Q ss_pred ChHHHHHHHHHHHh
Q 020976 25 YTDNALRMFRGLQK 38 (319)
Q Consensus 25 ~~~~a~~~~~~~~~ 38 (319)
+.+.|..+|+++..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34455555555544
No 446
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.06 E-value=1.2e+02 Score=24.36 Aligned_cols=97 Identities=13% Similarity=0.221 Sum_probs=55.6
Q ss_pred cccHHHHHHHHHHcCchHHHHHHHHHHHh----CCCccChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH---
Q 020976 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVT----DGVQLDIVSYNT-LINLYCKEGKLEAAYLLLDEMEKQGFECDKY--- 186 (319)
Q Consensus 115 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 186 (319)
...+..+...|++.++.+.+.++.++... .|.+.|+....+ +.-.|....-.++.++..+.|.+.|...+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45566777888888888888777766544 355555432222 1222333334667777778888777655432
Q ss_pred -hHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 187 -THTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 187 -~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
+|.-+- +....++.+|-.++.....
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 333222 2233467777666666553
No 447
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=52.58 E-value=67 Score=24.27 Aligned_cols=78 Identities=15% Similarity=0.257 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhccC-----------CchhHHHHHHHHHccC---------ChhHHHHHHHHHHHcCCcc-CHHHHHHHHH
Q 020976 236 IDHAINVFESMEVK-----------DSFTYSSMVHNLCKAK---------RLPSASKLLLSCLKSGVRI-LKSAQKAVVD 294 (319)
Q Consensus 236 ~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 294 (319)
.+.|..++..|-.. ...-|..+..+|.+.| +.+.-.++++.+++.|++- =+..|.++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 56667777666543 3345666677777665 3455667777778777653 3467888887
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 020976 295 GLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~ 313 (319)
--.-.-++++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 7666667888888887765
No 448
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.47 E-value=96 Score=23.12 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=39.5
Q ss_pred CCCCCcchHhHHHHHHHHhhcC----ChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 020976 3 CGDLTPCTATFNIMLNGLCKNR----YTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELG 72 (319)
Q Consensus 3 ~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (319)
+.|+-++...++.++..+.+.. .++-+..+=.+....++.++ ......-+..|-+.||+.+.-.+|-...
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~ 78 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK 78 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH
Confidence 3677888888888887776543 44444444444444444432 2233333445556666666555554443
No 449
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.42 E-value=1.2e+02 Score=24.31 Aligned_cols=114 Identities=17% Similarity=0.175 Sum_probs=63.1
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199 (319)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
.++....+.++.......+..+.. ...-...+..+...|++..|++++.+..+.- . +...|+.+ +.. ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~-~~L--~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCV-RHL--SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHH-HHH--hH
Confidence 445555566666666666665543 2334456677778999999999988876531 0 11111111 110 11
Q ss_pred ChhHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976 200 NIKGARLHLEYMNKI-----GFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (319)
++++.....+.+.+. -...|+..|..+..+|.-.|+...+.+-+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 222222222222221 114677889999999999998777664444
No 450
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=51.97 E-value=66 Score=21.10 Aligned_cols=20 Identities=15% Similarity=0.516 Sum_probs=9.0
Q ss_pred HHHHHHcCchHHHHHHHHHH
Q 020976 122 IAAFVKIGRLKEATDYMEQM 141 (319)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~ 141 (319)
+..|...++.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555544443
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.83 E-value=74 Score=21.66 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=53.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHH
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKH-----GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKC 89 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 89 (319)
+...+-..+.-.....++++..+. ...-|......-+. |+. ..+.+.++|..|...|+-.. +..|......
T Consensus 32 ~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~-ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 32 IEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIK-YAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEF 108 (126)
T ss_dssp HHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHH-HHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHH
T ss_pred HHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHH-HHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 334444455555556666655432 12334444333333 333 33489999999988766544 5667888888
Q ss_pred HHhcCChhHHHHHHHH
Q 020976 90 CFRNRKYKLGLEILSA 105 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~ 105 (319)
+...|++++|.++|+.
T Consensus 109 le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHTT-HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHh
Confidence 8999999999999875
No 452
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=51.82 E-value=46 Score=19.27 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=30.9
Q ss_pred HHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 020976 261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL-----RHSGCRREAKKIQ 309 (319)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~ 309 (319)
+...|++=+|-++++.+-.....|....+..+|+.. .+.|+.+.|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 445778888888888876543334556666666543 4578887777654
No 453
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.30 E-value=1.3e+02 Score=24.32 Aligned_cols=144 Identities=11% Similarity=0.066 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHhCCC----ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHH
Q 020976 131 LKEATDYMEQMVTDGV----QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 206 (319)
Q Consensus 131 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (319)
.+.|.+.|+.....+. ..+......+.....+.|+.+.-..+++.... .++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777887776422 33445556666777777776665555555443 2356667788888888888888888
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHh----hccC---CchhHHHHHHHHHccCChhHHHHHHHHH
Q 020976 207 HLEYMNKIGFDSNLEAYNCIVDRLGKDGK--IDHAINVFES----MEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC 277 (319)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (319)
+++.+...+..++... ..++..+...+. .+.+.+.+.. +... +......++..+...-..++-.+-++++
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 8888887542223333 334444442333 3666666543 2222 2224555555544433333333344444
Q ss_pred H
Q 020976 278 L 278 (319)
Q Consensus 278 ~ 278 (319)
.
T Consensus 302 ~ 302 (324)
T PF11838_consen 302 F 302 (324)
T ss_dssp H
T ss_pred H
Confidence 3
No 454
>PRK10941 hypothetical protein; Provisional
Probab=51.08 E-value=1.2e+02 Score=23.99 Aligned_cols=77 Identities=10% Similarity=-0.108 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHH
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAA 124 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~ 124 (319)
..+.+-.+|.+.++++.|.+..+.+....+. ++.-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455666788888999999998888875432 55566666677888888888888888877653 23333333334433
No 455
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.91 E-value=1.4e+02 Score=24.47 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHHcCchHHHHHHHHHHHh----CCCccChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcHH----
Q 020976 116 FGYCTVIAAFVKIGRLKEATDYMEQMVT----DGVQLDIVSYNTLINLYC-KEGKLEAAYLLLDEMEKQGFECDKY---- 186 (319)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~---- 186 (319)
..+......|++.||.+.|++.+....+ .|.+.|+..+..-+..+. ...-..+-++..+.+.+.|...+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455556678888888888877766544 366666655544333322 2222344555555556666554432
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
+|..+ .|....++.+|-.+|-....
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 33333 22344577777777766553
No 456
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.63 E-value=3.5e+02 Score=29.10 Aligned_cols=61 Identities=13% Similarity=-0.003 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhcc-CCchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 220 LEAYNCIVDRLGKDGKIDHAINVFESMEV-KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
..+|....+...+.|+++.|...+-...+ .-+..+-..+..+-..|+...|+.++++....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 46677777777789999999876655443 36677777888888999999999999988754
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.24 E-value=1.6e+02 Score=25.09 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=8.0
Q ss_pred cCchHHHHHHHHHHH
Q 020976 128 IGRLKEATDYMEQMV 142 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~ 142 (319)
.|+...++.+++.+.
T Consensus 187 ~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 187 NGDARRALNLLELAA 201 (413)
T ss_pred CCCHHHHHHHHHHHH
Confidence 455555555555543
No 458
>PRK09857 putative transposase; Provisional
Probab=50.16 E-value=1.3e+02 Score=24.14 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC
Q 020976 83 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 149 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (319)
+..+++...+.++.++..++++.+.+. .+......-++..-+.+.|.-++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555545566666666666666554 233334444556666666766777888888888877654
No 459
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.73 E-value=1.4e+02 Score=24.06 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=24.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
....+.++.....+.+..+... ..-...+..+...|++..|++++.+...
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~~v------~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIKTV------QQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444321 1223345555566666666666665544
No 460
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.71 E-value=87 Score=21.82 Aligned_cols=68 Identities=9% Similarity=0.134 Sum_probs=34.9
Q ss_pred CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976 77 APNAITYTTIMKCCFRNRK---YKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.++..+--.+..++.+..+ ..+.+.+++.+.+...+. .....--|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3455555555555555443 445556666666422111 1222223444566666666666666666654
No 461
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.33 E-value=2.8e+02 Score=27.56 Aligned_cols=149 Identities=13% Similarity=0.050 Sum_probs=78.4
Q ss_pred hcCChhHHHH------HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-------hCCCCCCcccHHHHHH
Q 020976 57 KAGRLRTARW------ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-------RKGYTFDGFGYCTVIA 123 (319)
Q Consensus 57 ~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ll~ 123 (319)
..|.+.++.+ ++......-.++....|..+...+-+.++.++|+..-.+.. ...-+-+...|..+..
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3445555554 44433322234456667777777778888887776544332 1111223334444444
Q ss_pred HHHHcCchHHHHHHHHHHHhC-----C--CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC--CCcHHhHH
Q 020976 124 AFVKIGRLKEATDYMEQMVTD-----G--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-----GF--ECDKYTHT 189 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~ 189 (319)
.....+....|...+.+.... | -||...+++.+-..+...++++.|.++++..... |. -+...++.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 455556666777666665442 1 1333344444444455557777777777766542 11 12334555
Q ss_pred HHHHHHhccCChhHHH
Q 020976 190 ILIDGLCKAGNIKGAR 205 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~ 205 (319)
.+.+.+...+++..+.
T Consensus 1104 ~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNAL 1119 (1236)
T ss_pred HHHHHHhhhHHHHHHH
Confidence 5655555555555443
No 462
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.91 E-value=74 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=13.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHH
Q 020976 15 IMLNGLCKNRYTDNALRMFRGL 36 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~ 36 (319)
.++.-|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4455666667777777776664
No 463
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.53 E-value=63 Score=19.90 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=11.4
Q ss_pred HHhcCChhHHHHHHHHHhhCC
Q 020976 55 LCKAGRLRTARWILKELGDSG 75 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~ 75 (319)
+.++.--++|+++++-+.++|
T Consensus 41 L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 41 LRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 444455555666655555544
No 464
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.27 E-value=1.9e+02 Score=25.65 Aligned_cols=83 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCC-------------CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 020976 1 MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-------------FVPELVTYNILIKGLCKAGRLRTARWI 67 (319)
Q Consensus 1 M~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 67 (319)
+.+.|++.+......++... .|+...|+.+++++...| -.++......++.++.. ++.+.+..+
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHH
Q ss_pred HHHHhhCCCCCChhhHHHH
Q 020976 68 LKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l 86 (319)
++++...|..|.......+
T Consensus 268 ~~~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 268 VTRLVEQGVDFSNALADLL 286 (509)
T ss_pred HHHHHHcCCCHHHHHHHHH
No 465
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.88 E-value=2.5e+02 Score=26.68 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=15.1
Q ss_pred cHHhHHHHHHHHhccCChhHHHHHHHHHH
Q 020976 184 DKYTHTILIDGLCKAGNIKGARLHLEYMN 212 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
+..+|..|.......|+.+-|+..|+...
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 34455555555555555555555555443
No 466
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.75 E-value=1.6e+02 Score=24.21 Aligned_cols=117 Identities=8% Similarity=0.033 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 020976 26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 105 (319)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (319)
+.+|.++|.+..+. -..+|+ +..+...--...+.+.+++...-...-..+..+.-+.|+..+|.+.++.
T Consensus 232 i~~AE~l~k~ALka----~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKA----GETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHH----HHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHhCCCCCCcccHHH---HHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976 106 MKRKGYTFDGFGYCT---VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155 (319)
Q Consensus 106 ~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
+.+. .|-...++. |+.++....-+.++..++-+..+...+.+......
T Consensus 301 L~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 301 LMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred Hhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
No 467
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.31 E-value=1.6e+02 Score=24.27 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976 96 YKLGLEILSAMKRKGYTFDG----FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
.++++.+++.+++. .|+. ..|.+++......|.++.++.+|++++..|..|-...-..++..+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44566666666654 3342 3466677777777777788888888887777776665555555544
No 468
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.18 E-value=78 Score=20.55 Aligned_cols=45 Identities=11% Similarity=-0.054 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
..+.+++....+....+-....|.-.|++.|+.+.+.+-|+.-..
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 344455555554444444455566666677777777666665444
No 469
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.89 E-value=1.5e+02 Score=23.62 Aligned_cols=150 Identities=13% Similarity=0.023 Sum_probs=65.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cC
Q 020976 23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NR 94 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 94 (319)
.+++..+...+......+. ......+...|.. ..+..+|.++|....+.|. ......|...+.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCccc
Confidence 3455555555555544321 1222223333322 2345666666665555432 2223333333333 23
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-------chHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----c
Q 020976 95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-------RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----E 163 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 163 (319)
+..+|..+|++..+.|..+-......+...|..-. +...|...+.+....+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 56666666666666653322111222222222210 2224555555555543 22333333333322 2
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 020976 164 GKLEAAYLLLDEMEKQGF 181 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~ 181 (319)
.+..+|...|...-+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 345566666666555543
No 470
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.39 E-value=71 Score=19.91 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHhhccCCchhHHHHHHHHHccC
Q 020976 234 GKIDHAINVFESMEVKDSFTYSSMVHNLCKAK 265 (319)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (319)
.+.+.+.++++.+..+.+..|..+..++-..|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555555555555555555555555554444
No 471
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.96 E-value=1.4e+02 Score=23.30 Aligned_cols=94 Identities=12% Similarity=-0.071 Sum_probs=53.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhc------CCCCCh-----------hhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNKI------GFDSNL-----------EAYNCIVDRLGKDGKIDHAINVFESMEVK 249 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (319)
+...-..-+.+.|++.+|..-|.+.+.. .-+|.. ..+.....++...|++-++++.-.++...
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444445566778888888777765321 112222 22333445556667777777777666655
Q ss_pred ---CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 250 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 250 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
+...|-.-..+.+..=+.++|..-|...++.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 4444444445555555666777777777664
No 472
>PRK10941 hypothetical protein; Provisional
Probab=44.77 E-value=1.6e+02 Score=23.41 Aligned_cols=61 Identities=18% Similarity=0.037 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
.+.+-.+|.+.++++.|+.+.+.+....+. ++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 455556677777888888877777765433 4444555555677777777777777766654
No 473
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.63 E-value=2.9e+02 Score=26.41 Aligned_cols=116 Identities=11% Similarity=0.092 Sum_probs=68.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCh--hHHHHHHHHHhhCCCCCChhhHHH-
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHG--FV-PELVTYNILIKGLCKAGRL--RTARWILKELGDSGHAPNAITYTT- 85 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 85 (319)
-|..|+..|...|..++|+++|.+..... .. --...+-.++..+.+.+.. +-.++.-+...+....-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999987631 01 0122233355555454443 444444433333221111111111
Q ss_pred -----------HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 020976 86 -----------IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127 (319)
Q Consensus 86 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (319)
-+-.|......+-+..+++.+....-.++...++.++..|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122355566777788888888766545567777777777764
No 474
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=44.54 E-value=89 Score=20.50 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=13.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHH
Q 020976 190 ILIDGLCKAGNIKGARLHLEYMN 212 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
.++..|...+++++|...+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34455556666666666665543
No 475
>PRK09857 putative transposase; Provisional
Probab=44.08 E-value=1.7e+02 Score=23.57 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=13.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCC
Q 020976 190 ILIDGLCKAGNIKGARLHLEYMNKIGFD 217 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (319)
++..-+.+.|.-+++..+...|...|+.
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3334444444444455555555555543
No 476
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=43.87 E-value=1.4e+02 Score=22.44 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=14.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHh
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQK 38 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 38 (319)
.+.++..+...|+++.|-+.|.-+.+
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 34555555555556555555555554
No 477
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.68 E-value=97 Score=20.64 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=17.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCccc
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 117 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (319)
+..+.++...++|+++++-|.++| ..+...
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 334445566677777777777666 444433
No 478
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=43.40 E-value=1.6e+02 Score=24.06 Aligned_cols=67 Identities=15% Similarity=0.028 Sum_probs=49.8
Q ss_pred HHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 020976 230 LGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297 (319)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (319)
+.+..++-...++++.+...++....++..+... |+.+..-..++.+.+.|+.+++.....+.+.++
T Consensus 286 ~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~~-~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 286 YLKARDFYSWPKFVDFLARRDPEISLQLTDAILN-GDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HHhhhhhcchHHHHHHHhccChHHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 4455556667777777777788887777777654 455666778888888999999988888877654
No 479
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.30 E-value=42 Score=16.42 Aligned_cols=13 Identities=23% Similarity=0.145 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHhh
Q 020976 61 LRTARWILKELGD 73 (319)
Q Consensus 61 ~~~a~~~~~~~~~ 73 (319)
++.|..+|+....
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 480
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.10 E-value=21 Score=28.98 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=52.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh-hhHHHHHHHHHhcCCHHHHH
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-VSYNTLINLYCKEGKLEAAY 170 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 170 (319)
..|.++.|++.|...+... ++....|..-.+.+.+.+.+..|++=+...... .||. .-|-.--.+....|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4556666666666666554 444555555556666667777776666665553 2332 22333334445567777777
Q ss_pred HHHHHHHHcCCCCc
Q 020976 171 LLLDEMEKQGFECD 184 (319)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (319)
..+....+.+..+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 77777776655443
No 481
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.43 E-value=99 Score=20.40 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666777777777777777766655
No 482
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.97 E-value=1.1e+02 Score=20.80 Aligned_cols=62 Identities=19% Similarity=0.111 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHHH----cC-Ccc-CHHHHHHHH----HHHHhcCCHHHHHHHHHHH
Q 020976 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLK----SG-VRI-LKSAQKAVV----DGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~-~~~~~~~l~----~~~~~~g~~~~a~~~~~~~ 312 (319)
...+..|..++...|++++++.-.+..+. .| +.. ....|...+ .++...|..++|...|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33445555566666666655443333221 12 111 223343332 3556688888888877653
No 483
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=41.96 E-value=2.7e+02 Score=25.36 Aligned_cols=42 Identities=17% Similarity=0.365 Sum_probs=20.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (319)
.+|-.|.+.|++++|.++....... .......+...+..|..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 3444556666666666666433322 23333445555555544
No 484
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=41.76 E-value=1.2e+02 Score=23.67 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=12.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 219 NLEAYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
+..+...+..++...|+...+.++++.+
T Consensus 131 ~~Y~lAl~aYAL~la~~~~~~~~~~~~L 158 (246)
T PF07678_consen 131 DPYTLALVAYALALAGDSPQASKLLNKL 158 (246)
T ss_dssp SHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 3333333444444454545555444444
No 485
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.59 E-value=1.6e+02 Score=22.44 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=13.6
Q ss_pred HHHHHHcCchHHHHHHHHHHHhC
Q 020976 122 IAAFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.....+.|+.++|.+.|.++...
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcC
Confidence 34445566666666666666654
No 486
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.09 E-value=2e+02 Score=26.13 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHHhhccC---C------chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCH
Q 020976 232 KDGKIDHAINVFESMEVK---D------SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302 (319)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (319)
+..++..+.++|..-... | ......+--+|....+.+.|.+++++..+...+ ++.+-..+..+....|.-
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcch
Confidence 455666777766542211 1 123455666777788888888888888775322 444555556677778888
Q ss_pred HHHHHHHHHHHhh
Q 020976 303 REAKKIQSKIRMA 315 (319)
Q Consensus 303 ~~a~~~~~~~~~~ 315 (319)
++|+.....+...
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877666543
No 487
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.58 E-value=1.8e+02 Score=22.90 Aligned_cols=26 Identities=19% Similarity=-0.029 Sum_probs=17.1
Q ss_pred CcccHHHHHHHHHHcCchHHHHHHHH
Q 020976 114 DGFGYCTVIAAFVKIGRLKEATDYME 139 (319)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~ 139 (319)
++..+..+...+.+.|++.+|...|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 55667777777888888777776553
No 488
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.46 E-value=2.6e+02 Score=24.59 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH-HcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 167 EAAYLLLDEME-KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 167 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
++..+.+..+. ..|+..+......++. ...|+...|..+++.+..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 34444454443 3466666666655554 346788888888877654
No 489
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=40.43 E-value=3.9e+02 Score=26.68 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=91.8
Q ss_pred HhhcCChHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCC--CCChhhHHHH
Q 020976 20 LCKNRYTDNALR------MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD-----SGH--APNAITYTTI 86 (319)
Q Consensus 20 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~~l 86 (319)
....|.+.++.+ ++...-..-.++....|..+...+-+.++.++|...-.+..- .|. .-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 445566666666 555322211234667888899999999999999877554321 121 2234455556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC-------CCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-----CC--ccChhh
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRK-------GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV--QLDIVS 152 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~ 152 (319)
...+...++...|...+.+.... ..||...+++.+-..+...++.+.|.++++.+... |. -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55556666777777777666532 12344444455554555568889999998887763 11 123445
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 020976 153 YNTLINLYCKEGKLEAAYLLL 173 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~ 173 (319)
+..+.+.+...+++..|....
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 666666666666665554443
No 490
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.88 E-value=2e+02 Score=23.22 Aligned_cols=146 Identities=16% Similarity=0.091 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHhCCC----CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976 96 YKLGLEILSAMKRKGY----TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677888888776422 335555566666677777766665666665543 366777889999999999999999
Q ss_pred HHHHHHHcC-CCCcHHhHHHHHHHHhccCC--hhHHHHHHH----HHHhcCCCCChhhHHHHHHHHH----hcCCHHHHH
Q 020976 172 LLDEMEKQG-FECDKYTHTILIDGLCKAGN--IKGARLHLE----YMNKIGFDSNLEAYNCIVDRLG----KDGKIDHAI 240 (319)
Q Consensus 172 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~ 240 (319)
+++.....+ +. +... ..++..+...+. .+.+...+. .+.+. +..+......++..+. .....++..
T Consensus 223 ~l~~~l~~~~v~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVR-SQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS--TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccc-cHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 999888754 44 3333 344444442333 255555543 33332 2333335555665543 334456666
Q ss_pred HHHHhhc
Q 020976 241 NVFESME 247 (319)
Q Consensus 241 ~~~~~~~ 247 (319)
++|+.-.
T Consensus 300 ~f~~~~~ 306 (324)
T PF11838_consen 300 EFFEDKP 306 (324)
T ss_dssp HHHHHHC
T ss_pred HHHhhCc
Confidence 6665444
No 491
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=39.70 E-value=75 Score=19.14 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=27.8
Q ss_pred HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcC
Q 020976 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300 (319)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (319)
...++.+.+.+++++..+.|..|.......+.-+..+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346888999999999998888877666555665555443
No 492
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=39.47 E-value=1.2e+02 Score=20.68 Aligned_cols=40 Identities=5% Similarity=0.129 Sum_probs=20.6
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176 (319)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
+++.+...++......+..+-..|.+..+..+|..+|+-+
T Consensus 85 fl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 85 FLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 3444444444434444444445555555666666666544
No 493
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.89 E-value=1.8e+02 Score=22.48 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=40.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHhh
Q 020976 14 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK-AGRLRTARWILKELGD 73 (319)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 73 (319)
-.++..+-+.|+++++.+.+.++...+...+..--+.+-.+|-. -|....+++++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 45677888999999999999999998777777666666666633 2444556666655544
No 494
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.83 E-value=2.1e+02 Score=23.23 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=35.2
Q ss_pred hcCCHHHHHHHHHH-HHHcCCCCcHH----hHHHHHHHHhccCChh-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 020976 162 KEGKLEAAYLLLDE-MEKQGFECDKY----THTILIDGLCKAGNIK-GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235 (319)
Q Consensus 162 ~~~~~~~a~~~~~~-~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (319)
+...+++.....++ |++.+ -|+.. .|..++++---..+-+ -|.+.++.+ .+|..++.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCCh
Confidence 33445555544444 44444 34543 4555555432221111 123333332 457778888999888
Q ss_pred HHHHH
Q 020976 236 IDHAI 240 (319)
Q Consensus 236 ~~~a~ 240 (319)
.+..+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 77553
No 495
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.71 E-value=2.7e+02 Score=24.38 Aligned_cols=136 Identities=13% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHH
Q 020976 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL 261 (319)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 261 (319)
+++.......+...+......-....++.+.+.. ..|.......+..+.....-.--.+..+++........-.-+.-.
T Consensus 175 ~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s-~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~s 253 (472)
T PRK14962 175 NISDELIIKRLQEVAEAEGIEIDREALSFIAKRA-SGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINA 253 (472)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhhhcc
Q 020976 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR------EAKKIQSKIRMAKIS 318 (319)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~i~ 318 (319)
...++++.|..++.+|...|..|....-..+..++-.-|.-+ -+...++-..+-|.+
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~ 316 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFA 316 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCc
No 496
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.69 E-value=2.1e+02 Score=22.75 Aligned_cols=24 Identities=17% Similarity=-0.008 Sum_probs=11.9
Q ss_pred ChhHHHHHHHHHHHcCCccCHHHH
Q 020976 266 RLPSASKLLLSCLKSGVRILKSAQ 289 (319)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~ 289 (319)
+...|...+......+........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~ 275 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEAL 275 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHH
Confidence 445555555555555444333333
No 497
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.50 E-value=1.9e+02 Score=22.22 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=33.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-CchhHHHHHHHHHc
Q 020976 190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCK 263 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~ 263 (319)
.++.++...|+.+.|..++....-.. .+......++.. ..++.+.+|..+-+..... ....+..++..+..
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 35555555666666666655433210 111122222222 4556666666666655543 23455555555443
No 498
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.11 E-value=3.5e+02 Score=25.18 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=47.3
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC---C----------CCChhhHHHHHHHHHh
Q 020976 27 DNALRMFRGL-QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG---H----------APNAITYTTIMKCCFR 92 (319)
Q Consensus 27 ~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~----------~~~~~~~~~l~~~~~~ 92 (319)
++....+... ...|+..+......++... .|++..+..+++++...| + ..+......++.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 4444444443 3346666666666555543 477777777776654321 1 113333455555544
Q ss_pred cCChhHHHHHHHHHHhCCCCC
Q 020976 93 NRKYKLGLEILSAMKRKGYTF 113 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~ 113 (319)
.++...++.+++.+...|..+
T Consensus 258 ~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 377778888888888777544
No 499
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=36.78 E-value=1.9e+02 Score=22.04 Aligned_cols=62 Identities=10% Similarity=0.195 Sum_probs=33.3
Q ss_pred HHhHHHHHHHHhccC---------ChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 185 KYTHTILIDGLCKAG---------NIKGARLHLEYMNKIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
..-|..+..+|.+.| +.+....+++..++.|++. =+..|+++++--.-.-++++..+++..+
T Consensus 163 leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 163 LEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHh
Confidence 344566666666665 3344455555555555431 2355666665444444566666665544
No 500
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=36.22 E-value=1.1e+02 Score=19.11 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=17.0
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHHHHHH
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGL 36 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 36 (319)
+.|+...||.++......+...-|..++.+.
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~ 42 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRI 42 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 4556666666666665555555554444433
Done!