Query 020976
Match_columns 319
No_of_seqs 655 out of 1490
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 10:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5.1E-36 1.7E-40 251.0 24.3 197 2-198 17-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.9E-35 6.5E-40 247.5 23.4 207 27-233 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 4.5E-32 1.5E-36 235.1 31.1 307 4-316 194-580 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.1E-31 3.6E-36 232.7 27.0 284 7-296 302-594 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-27 8.2E-32 194.8 35.3 302 8-316 65-369 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-26 1.2E-30 187.8 36.4 301 9-316 32-335 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 4.4E-26 1.5E-30 190.8 34.8 304 7-317 23-360 (450)
8 3ieg_A DNAJ homolog subfamily 99.9 2.8E-23 9.6E-28 168.4 35.7 303 9-318 2-338 (359)
9 2y4t_A DNAJ homolog subfamily 99.9 5.3E-23 1.8E-27 172.2 32.3 297 7-311 57-405 (450)
10 3hym_B Cell division cycle pro 99.9 1.4E-22 4.9E-27 162.4 31.1 293 5-303 17-322 (330)
11 2gw1_A Mitochondrial precursor 99.9 1.3E-22 4.6E-27 172.5 32.5 300 9-316 5-402 (514)
12 2gw1_A Mitochondrial precursor 99.9 1.3E-22 4.4E-27 172.5 31.5 306 7-316 36-479 (514)
13 3hym_B Cell division cycle pro 99.9 9.2E-22 3.1E-26 157.7 30.2 270 41-316 18-300 (330)
14 3fp2_A TPR repeat-containing p 99.9 5.9E-21 2E-25 163.3 32.8 228 83-316 246-492 (537)
15 1fch_A Peroxisomal targeting s 99.9 3.7E-22 1.2E-26 162.6 23.8 288 20-311 35-355 (368)
16 3ieg_A DNAJ homolog subfamily 99.9 3.2E-20 1.1E-24 150.4 32.7 285 8-298 35-352 (359)
17 3fp2_A TPR repeat-containing p 99.9 1.4E-20 4.7E-25 161.0 31.2 301 9-316 24-408 (537)
18 1fch_A Peroxisomal targeting s 99.9 1.3E-20 4.5E-25 153.4 28.6 264 9-277 63-356 (368)
19 4eqf_A PEX5-related protein; a 99.9 4.2E-21 1.4E-25 156.3 24.6 264 44-311 64-352 (365)
20 4eqf_A PEX5-related protein; a 99.9 3.2E-21 1.1E-25 157.0 23.5 261 9-274 64-350 (365)
21 3cv0_A Peroxisome targeting si 99.9 9.6E-21 3.3E-25 151.6 23.2 277 9-312 20-312 (327)
22 3cv0_A Peroxisome targeting si 99.9 2.4E-20 8.1E-25 149.3 24.7 232 8-244 53-310 (327)
23 3mkr_A Coatomer subunit epsilo 99.9 1.3E-19 4.6E-24 142.2 24.1 275 17-309 6-288 (291)
24 3mkr_A Coatomer subunit epsilo 99.9 2.7E-19 9.3E-24 140.4 23.3 255 52-319 6-268 (291)
25 3spa_A Mtrpol, DNA-directed RN 99.8 3.5E-21 1.2E-25 167.2 11.5 151 9-164 126-286 (1134)
26 1b89_A Protein (clathrin heavy 99.8 3.1E-20 1.1E-24 149.5 11.0 238 22-297 15-252 (449)
27 3spa_A Mtrpol, DNA-directed RN 99.8 4.6E-20 1.6E-24 160.3 12.3 150 80-234 127-286 (1134)
28 2xm6_A Protein corresponding t 99.8 1E-15 3.5E-20 129.4 38.5 273 23-316 128-433 (490)
29 1b89_A Protein (clathrin heavy 99.8 3.1E-19 1E-23 143.8 16.0 266 8-309 30-305 (449)
30 2pl2_A Hypothetical conserved 99.8 5.5E-18 1.9E-22 127.4 21.5 198 7-210 2-210 (217)
31 2xm6_A Protein corresponding t 99.8 2.2E-15 7.4E-20 127.4 38.3 289 9-315 38-396 (490)
32 3uq3_A Heat shock protein STI1 99.8 2.6E-17 8.9E-22 127.0 24.4 224 10-247 5-234 (258)
33 2pl2_A Hypothetical conserved 99.8 1.6E-17 5.6E-22 124.8 21.1 200 42-247 2-212 (217)
34 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.4E-17 4.8E-22 129.8 20.0 245 21-271 16-266 (275)
35 3uq3_A Heat shock protein STI1 99.8 3.4E-17 1.2E-21 126.3 21.9 223 45-280 5-236 (258)
36 3u4t_A TPR repeat-containing p 99.8 2.3E-16 7.8E-21 122.8 24.4 241 45-292 3-261 (272)
37 3u4t_A TPR repeat-containing p 99.8 1.6E-16 5.5E-21 123.7 23.3 237 9-249 2-250 (272)
38 1xnf_A Lipoprotein NLPI; TPR, 99.8 7E-17 2.4E-21 125.9 21.1 243 57-309 17-269 (275)
39 4g1t_A Interferon-induced prot 99.8 3.1E-15 1.1E-19 125.8 32.5 304 8-315 49-401 (472)
40 1ouv_A Conserved hypothetical 99.8 2.3E-15 7.8E-20 117.3 28.8 224 44-282 5-253 (273)
41 2h6f_A Protein farnesyltransfe 99.8 4.6E-16 1.6E-20 126.2 25.3 245 10-261 97-363 (382)
42 1ouv_A Conserved hypothetical 99.8 4.2E-15 1.4E-19 115.8 29.7 223 9-249 5-251 (273)
43 2q7f_A YRRB protein; TPR, prot 99.8 1.1E-16 3.7E-21 122.4 20.0 202 9-215 22-223 (243)
44 2ho1_A Type 4 fimbrial biogene 99.8 1.2E-15 4E-20 117.4 25.4 200 11-214 38-238 (252)
45 2vq2_A PILW, putative fimbrial 99.8 1.7E-15 5.8E-20 114.2 25.4 204 8-214 6-211 (225)
46 2ooe_A Cleavage stimulation fa 99.8 3.4E-14 1.2E-18 121.3 35.5 64 9-74 12-75 (530)
47 4g1t_A Interferon-induced prot 99.8 2E-15 6.8E-20 127.0 27.4 303 9-316 93-460 (472)
48 2h6f_A Protein farnesyltransfe 99.7 1.2E-15 4E-20 123.9 24.6 246 45-298 97-365 (382)
49 3sf4_A G-protein-signaling mod 99.7 1.7E-16 5.7E-21 130.7 18.9 296 6-302 5-363 (406)
50 2ho1_A Type 4 fimbrial biogene 99.7 2.5E-15 8.4E-20 115.6 24.2 198 45-246 37-235 (252)
51 2vq2_A PILW, putative fimbrial 99.7 3.3E-15 1.1E-19 112.6 23.2 199 79-280 7-211 (225)
52 2q7f_A YRRB protein; TPR, prot 99.7 4E-16 1.4E-20 119.2 18.2 200 45-280 23-222 (243)
53 4a1s_A PINS, partner of inscut 99.7 2.7E-16 9.2E-21 129.9 18.3 266 13-279 51-371 (411)
54 4a1s_A PINS, partner of inscut 99.7 4.8E-16 1.6E-20 128.4 19.7 270 45-315 48-372 (411)
55 3sf4_A G-protein-signaling mod 99.7 1.4E-15 4.9E-20 125.1 21.0 273 42-315 6-336 (406)
56 3ro2_A PINS homolog, G-protein 99.7 1.1E-15 3.8E-20 122.4 19.2 277 10-314 5-331 (338)
57 3ro2_A PINS homolog, G-protein 99.7 1.4E-15 4.8E-20 121.8 19.3 237 47-315 7-292 (338)
58 3ulq_A Response regulator aspa 99.7 1.5E-14 5.2E-19 118.3 23.8 291 20-315 22-368 (383)
59 2ond_A Cleavage stimulation fa 99.7 1.6E-13 5.6E-18 108.7 28.1 236 9-249 7-270 (308)
60 2ond_A Cleavage stimulation fa 99.7 1.6E-13 5.5E-18 108.7 27.3 231 45-280 8-270 (308)
61 3vtx_A MAMA; tetratricopeptide 99.7 3.4E-14 1.1E-18 103.8 21.2 167 9-179 4-170 (184)
62 1xi4_A Clathrin heavy chain; a 99.7 2.6E-13 8.8E-18 122.4 28.7 252 16-312 1055-1306(1630)
63 4abn_A Tetratricopeptide repea 99.7 1.2E-14 4.2E-19 122.0 19.5 207 61-273 84-314 (474)
64 3vtx_A MAMA; tetratricopeptide 99.6 9.7E-14 3.3E-18 101.3 21.4 167 44-214 4-170 (184)
65 3nf1_A KLC 1, kinesin light ch 99.6 7.5E-15 2.6E-19 116.4 16.0 246 45-315 27-307 (311)
66 3nf1_A KLC 1, kinesin light ch 99.6 4.9E-15 1.7E-19 117.4 14.8 173 7-179 24-224 (311)
67 3e4b_A ALGK; tetratricopeptide 99.6 2.3E-14 7.9E-19 119.6 19.2 281 16-316 9-352 (452)
68 4abn_A Tetratricopeptide repea 99.6 1.4E-14 4.9E-19 121.6 18.0 215 95-315 83-321 (474)
69 1xi4_A Clathrin heavy chain; a 99.6 7.9E-13 2.7E-17 119.3 29.5 251 22-310 1088-1340(1630)
70 1hz4_A MALT regulatory protein 99.6 2.3E-12 7.9E-17 104.9 28.7 295 13-315 17-349 (373)
71 3ulq_A Response regulator aspa 99.6 2E-13 6.9E-18 111.6 22.0 230 51-280 109-368 (383)
72 3q15_A PSP28, response regulat 99.6 4.3E-13 1.5E-17 109.5 23.5 308 5-315 5-365 (378)
73 3e4b_A ALGK; tetratricopeptide 99.6 3.7E-12 1.3E-16 106.3 27.9 274 25-316 89-388 (452)
74 1hz4_A MALT regulatory protein 99.6 2.1E-12 7.2E-17 105.2 24.9 268 47-314 16-321 (373)
75 2ooe_A Cleavage stimulation fa 99.6 1.2E-11 4.1E-16 105.6 29.4 303 9-315 120-492 (530)
76 3as5_A MAMA; tetratricopeptide 99.6 8.8E-13 3E-17 96.0 18.8 162 12-177 10-171 (186)
77 4i17_A Hypothetical protein; T 99.6 2.2E-12 7.5E-17 97.5 21.1 207 8-226 5-220 (228)
78 4gyw_A UDP-N-acetylglucosamine 99.5 5.5E-13 1.9E-17 116.6 19.6 166 9-178 8-173 (723)
79 3as5_A MAMA; tetratricopeptide 99.5 1.8E-12 6.2E-17 94.3 19.5 166 45-214 8-173 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.5 1.7E-12 5.9E-17 113.4 20.0 166 44-213 8-173 (723)
81 4i17_A Hypothetical protein; T 99.5 1.1E-11 3.8E-16 93.6 20.7 195 43-249 5-209 (228)
82 3q15_A PSP28, response regulat 99.5 1.3E-11 4.4E-16 100.7 21.2 229 50-279 106-364 (378)
83 3edt_B KLC 2, kinesin light ch 99.5 1.3E-12 4.4E-17 101.8 14.5 159 20-178 11-197 (283)
84 3edt_B KLC 2, kinesin light ch 99.5 2.5E-12 8.5E-17 100.2 15.8 158 56-213 12-197 (283)
85 3mv2_B Coatomer subunit epsilo 99.4 7.5E-11 2.6E-15 91.3 22.3 239 18-280 21-282 (310)
86 1qqe_A Vesicular transport pro 99.4 2.8E-11 9.7E-16 95.0 20.6 190 89-278 46-267 (292)
87 1qqe_A Vesicular transport pro 99.4 6.7E-11 2.3E-15 92.8 22.1 212 25-253 32-273 (292)
88 3mv2_B Coatomer subunit epsilo 99.4 2.7E-10 9.2E-15 88.2 22.9 245 53-319 21-286 (310)
89 3qky_A Outer membrane assembly 99.4 8.9E-11 3.1E-15 90.6 19.0 186 9-214 14-224 (261)
90 3urz_A Uncharacterized protein 99.4 7.6E-11 2.6E-15 87.6 16.9 164 10-178 4-185 (208)
91 2fo7_A Synthetic consensus TPR 99.3 9.9E-11 3.4E-15 80.2 15.8 129 12-143 3-131 (136)
92 2fo7_A Synthetic consensus TPR 99.3 1.5E-10 5E-15 79.3 16.2 129 47-178 3-131 (136)
93 3qky_A Outer membrane assembly 99.3 1.3E-10 4.4E-15 89.7 17.3 187 43-249 13-224 (261)
94 3dra_A Protein farnesyltransfe 99.3 2.9E-09 1E-13 83.2 24.8 221 22-247 45-285 (306)
95 2pzi_A Probable serine/threoni 99.3 5.5E-11 1.9E-15 104.3 16.3 173 21-199 402-582 (681)
96 4e6h_A MRNA 3'-END-processing 99.3 2.3E-08 7.9E-13 86.8 31.9 116 8-124 64-194 (679)
97 2pzi_A Probable serine/threoni 99.3 1.3E-10 4.5E-15 101.9 18.1 186 56-247 402-603 (681)
98 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.2E-09 4.2E-14 82.2 20.8 187 9-215 3-214 (225)
99 4e6h_A MRNA 3'-END-processing 99.3 1.1E-08 3.8E-13 88.7 29.2 201 115-316 343-571 (679)
100 2yhc_A BAMD, UPF0169 lipoprote 99.3 7.3E-10 2.5E-14 83.4 19.3 189 115-318 4-216 (225)
101 3urz_A Uncharacterized protein 99.3 2.8E-10 9.6E-15 84.6 16.0 165 45-214 4-186 (208)
102 2r5s_A Uncharacterized protein 99.3 1.3E-10 4.6E-15 83.9 13.4 162 12-177 8-171 (176)
103 3dra_A Protein farnesyltransfe 99.2 4.3E-08 1.5E-12 76.6 27.4 218 57-279 44-286 (306)
104 4ga2_A E3 SUMO-protein ligase 99.2 7E-11 2.4E-15 82.9 10.3 143 18-164 5-148 (150)
105 2vsy_A XCC0866; transferase, g 99.2 4.3E-10 1.5E-14 96.8 17.3 156 23-182 2-160 (568)
106 3rjv_A Putative SEL1 repeat pr 99.2 1.9E-09 6.6E-14 80.2 18.7 178 27-216 3-199 (212)
107 3qou_A Protein YBBN; thioredox 99.2 5.4E-10 1.9E-14 87.4 16.3 168 42-213 114-283 (287)
108 3rjv_A Putative SEL1 repeat pr 99.2 7.1E-09 2.4E-13 77.2 21.3 138 99-246 5-155 (212)
109 2vsy_A XCC0866; transferase, g 99.2 7.6E-10 2.6E-14 95.3 17.4 154 58-215 2-158 (568)
110 3qou_A Protein YBBN; thioredox 99.2 1E-09 3.5E-14 85.8 16.5 166 77-246 114-281 (287)
111 4ga2_A E3 SUMO-protein ligase 99.2 1.9E-10 6.5E-15 80.7 11.0 81 120-202 36-116 (150)
112 2r5s_A Uncharacterized protein 99.2 3.9E-10 1.3E-14 81.4 12.5 162 47-212 8-171 (176)
113 2ifu_A Gamma-SNAP; membrane fu 99.2 6.7E-10 2.3E-14 87.8 13.6 198 23-247 4-222 (307)
114 3q7a_A Farnesyltransferase alp 99.1 5.6E-08 1.9E-12 76.8 23.4 183 13-200 57-257 (349)
115 2ifu_A Gamma-SNAP; membrane fu 99.1 5.2E-09 1.8E-13 82.7 17.5 185 52-241 43-253 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.4E-08 4.7E-13 75.6 18.2 127 12-144 8-150 (213)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.4E-08 4.6E-13 75.6 18.2 132 46-182 7-153 (213)
118 3u3w_A Transcriptional activat 99.1 5.5E-08 1.9E-12 76.2 21.5 160 87-246 82-263 (293)
119 2c2l_A CHIP, carboxy terminus 99.1 2.5E-09 8.6E-14 83.3 12.7 195 8-213 2-198 (281)
120 3u3w_A Transcriptional activat 99.1 1.2E-07 4.1E-12 74.3 22.2 159 156-314 81-265 (293)
121 1a17_A Serine/threonine protei 99.0 1.8E-08 6E-13 71.6 15.2 127 12-141 15-143 (166)
122 4gco_A Protein STI-1; structur 99.0 1.2E-08 4E-13 69.1 13.4 97 11-109 14-110 (126)
123 2uy1_A Cleavage stimulation fa 99.0 7.7E-07 2.6E-11 74.8 27.1 166 8-179 13-242 (493)
124 3q7a_A Farnesyltransferase alp 99.0 9.5E-07 3.3E-11 69.9 25.9 176 55-235 64-257 (349)
125 2c2l_A CHIP, carboxy terminus 99.0 2.9E-09 1E-13 82.9 11.6 99 79-179 3-101 (281)
126 2lni_A Stress-induced-phosphop 99.0 2.2E-08 7.4E-13 68.2 14.1 116 8-126 14-129 (133)
127 2vyi_A SGTA protein; chaperone 99.0 1.4E-08 4.8E-13 68.8 13.1 119 9-130 11-129 (131)
128 2qfc_A PLCR protein; TPR, HTH, 99.0 4.6E-08 1.6E-12 76.7 17.5 203 5-213 41-265 (293)
129 1na0_A Designed protein CTPR3; 99.0 2.9E-08 9.8E-13 66.6 14.3 98 10-109 9-106 (125)
130 1a17_A Serine/threonine protei 99.0 3.6E-08 1.2E-12 69.9 15.0 128 46-176 14-143 (166)
131 3gyz_A Chaperone protein IPGC; 99.0 9.9E-09 3.4E-13 71.6 11.2 98 45-144 36-133 (151)
132 3gw4_A Uncharacterized protein 99.0 1.4E-08 4.8E-13 74.8 12.7 156 21-177 3-174 (203)
133 4gco_A Protein STI-1; structur 99.0 3.9E-08 1.3E-12 66.5 13.8 91 86-178 19-109 (126)
134 2qfc_A PLCR protein; TPR, HTH, 99.0 9.4E-08 3.2E-12 74.9 17.9 159 118-276 78-262 (293)
135 2e2e_A Formate-dependent nitri 98.9 1.1E-08 3.9E-13 73.7 11.5 122 20-144 20-144 (177)
136 3gyz_A Chaperone protein IPGC; 98.9 1.7E-08 5.8E-13 70.5 11.5 103 6-110 31-134 (151)
137 2lni_A Stress-induced-phosphop 98.9 5.1E-08 1.7E-12 66.3 13.8 117 44-163 15-131 (133)
138 1na0_A Designed protein CTPR3; 98.9 6E-08 2E-12 65.0 13.7 97 45-143 9-105 (125)
139 1p5q_A FKBP52, FK506-binding p 98.9 4.8E-08 1.7E-12 78.1 15.3 151 24-177 127-292 (336)
140 3gw4_A Uncharacterized protein 98.9 2.5E-08 8.5E-13 73.4 12.7 157 56-213 3-175 (203)
141 2vyi_A SGTA protein; chaperone 98.9 6.9E-08 2.4E-12 65.3 13.2 119 44-165 11-129 (131)
142 2vgx_A Chaperone SYCD; alterna 98.9 2E-08 6.7E-13 70.1 10.1 97 45-143 21-117 (148)
143 2e2e_A Formate-dependent nitri 98.9 5.7E-08 1.9E-12 69.9 12.6 118 58-178 23-143 (177)
144 2xcb_A PCRH, regulatory protei 98.9 6.8E-08 2.3E-12 66.8 12.2 96 12-109 20-115 (142)
145 1p5q_A FKBP52, FK506-binding p 98.8 9.3E-08 3.2E-12 76.5 14.6 152 58-213 126-293 (336)
146 4f3v_A ESX-1 secretion system 98.8 3E-07 1E-11 70.3 16.3 188 22-215 18-238 (282)
147 4f3v_A ESX-1 secretion system 98.8 1.2E-07 4.2E-12 72.5 14.2 183 92-280 18-237 (282)
148 1elw_A TPR1-domain of HOP; HOP 98.8 2.4E-07 8E-12 61.4 14.2 99 9-109 3-101 (118)
149 3dss_A Geranylgeranyl transfer 98.8 3.7E-06 1.3E-10 66.2 22.5 131 28-162 48-191 (331)
150 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-07 4.8E-12 65.7 13.1 99 9-109 20-118 (148)
151 3upv_A Heat shock protein STI1 98.8 2.2E-07 7.6E-12 62.6 13.5 98 10-109 4-101 (126)
152 2fbn_A 70 kDa peptidylprolyl i 98.8 8.4E-09 2.9E-13 75.9 6.7 123 18-143 12-150 (198)
153 2uy1_A Cleavage stimulation fa 98.8 1.1E-05 3.8E-10 67.8 25.6 289 8-314 83-412 (493)
154 3sz7_A HSC70 cochaperone (SGT) 98.8 3.4E-07 1.2E-11 64.9 14.3 100 8-109 9-108 (164)
155 3q49_B STIP1 homology and U bo 98.8 2.3E-07 8E-12 63.5 12.7 100 8-109 7-106 (137)
156 4gcn_A Protein STI-1; structur 98.8 1.9E-07 6.3E-12 63.2 11.8 97 11-108 9-111 (127)
157 3upv_A Heat shock protein STI1 98.8 2.6E-07 8.8E-12 62.3 12.5 96 46-143 5-100 (126)
158 1elw_A TPR1-domain of HOP; HOP 98.7 6.1E-07 2.1E-11 59.3 13.9 59 48-107 7-65 (118)
159 2xcb_A PCRH, regulatory protei 98.7 2.3E-07 7.9E-12 64.1 12.1 99 44-144 17-115 (142)
160 3dss_A Geranylgeranyl transfer 98.7 1.8E-05 6E-10 62.4 23.8 175 45-224 26-231 (331)
161 2fbn_A 70 kDa peptidylprolyl i 98.7 3.5E-07 1.2E-11 67.1 13.3 132 10-143 38-185 (198)
162 1elr_A TPR2A-domain of HOP; HO 98.7 1.6E-07 5.6E-12 63.4 10.6 99 10-109 4-108 (131)
163 4b4t_Q 26S proteasome regulato 98.7 1.8E-06 6.1E-11 71.5 18.3 193 87-279 11-244 (434)
164 4gcn_A Protein STI-1; structur 98.7 5E-07 1.7E-11 61.0 12.3 59 48-107 11-69 (127)
165 2kck_A TPR repeat; tetratricop 98.7 3E-07 1E-11 60.3 11.0 25 153-177 43-67 (112)
166 2kck_A TPR repeat; tetratricop 98.7 4.8E-07 1.6E-11 59.2 12.0 99 9-109 5-106 (112)
167 2dba_A Smooth muscle cell asso 98.7 8.8E-07 3E-11 61.3 13.8 98 9-109 27-128 (148)
168 3q49_B STIP1 homology and U bo 98.7 5.6E-07 1.9E-11 61.5 12.5 98 44-143 8-105 (137)
169 1hxi_A PEX5, peroxisome target 98.7 3.9E-07 1.3E-11 61.0 10.8 95 13-109 20-114 (121)
170 4b4t_Q 26S proteasome regulato 98.7 1.1E-06 3.6E-11 72.9 15.7 199 51-249 10-245 (434)
171 3sz7_A HSC70 cochaperone (SGT) 98.7 7.7E-07 2.6E-11 63.1 12.8 99 44-144 10-108 (164)
172 1elr_A TPR2A-domain of HOP; HO 98.6 4.4E-07 1.5E-11 61.3 10.7 96 46-143 5-107 (131)
173 2dba_A Smooth muscle cell asso 98.6 3E-06 1E-10 58.5 14.9 60 118-178 68-127 (148)
174 1wao_1 Serine/threonine protei 98.6 6.1E-08 2.1E-12 81.3 6.7 125 12-139 8-134 (477)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.4E-06 4.7E-11 72.7 14.5 125 44-170 267-405 (457)
176 1hxi_A PEX5, peroxisome target 98.6 9.4E-07 3.2E-11 59.1 10.3 93 49-143 21-113 (121)
177 2xev_A YBGF; tetratricopeptide 98.5 3.7E-06 1.3E-10 56.6 13.3 94 14-109 6-105 (129)
178 3ro3_A PINS homolog, G-protein 98.5 8.3E-07 2.8E-11 62.3 10.3 60 118-177 92-156 (164)
179 1wao_1 Serine/threonine protei 98.5 1.5E-06 5.3E-11 72.8 13.2 122 85-209 11-134 (477)
180 3ro3_A PINS homolog, G-protein 98.5 1.2E-06 4E-11 61.6 10.8 137 151-314 10-157 (164)
181 1dce_A Protein (RAB geranylger 98.5 1.5E-05 5.1E-10 68.2 18.9 175 24-203 43-244 (567)
182 1ihg_A Cyclophilin 40; ppiase 98.5 1.8E-06 6.2E-11 69.8 12.7 97 12-109 225-336 (370)
183 2xev_A YBGF; tetratricopeptide 98.5 8.2E-06 2.8E-10 54.9 14.2 26 153-178 79-104 (129)
184 3k9i_A BH0479 protein; putativ 98.5 4.8E-07 1.6E-11 60.1 7.2 87 22-109 2-90 (117)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 3.1E-06 1.1E-10 70.6 13.3 151 57-211 246-412 (457)
186 3rkv_A Putative peptidylprolyl 98.4 4.9E-06 1.7E-10 58.7 12.1 100 9-109 10-126 (162)
187 2hr2_A Hypothetical protein; a 98.4 5.1E-06 1.7E-10 57.5 11.0 95 13-107 14-129 (159)
188 3n71_A Histone lysine methyltr 98.4 1.6E-06 5.4E-11 72.5 9.9 123 194-316 318-465 (490)
189 1ihg_A Cyclophilin 40; ppiase 98.4 3.7E-06 1.3E-10 68.1 11.8 137 46-204 224-360 (370)
190 3k9i_A BH0479 protein; putativ 98.4 1.7E-06 5.7E-11 57.4 8.1 84 94-178 4-89 (117)
191 2if4_A ATFKBP42; FKBP-like, al 98.4 1.9E-06 6.6E-11 68.8 9.6 148 11-179 180-328 (338)
192 3rkv_A Putative peptidylprolyl 98.4 9.3E-06 3.2E-10 57.2 12.0 63 116-179 64-126 (162)
193 2if4_A ATFKBP42; FKBP-like, al 98.3 5.8E-06 2E-10 66.1 10.6 93 187-280 232-328 (338)
194 2hr2_A Hypothetical protein; a 98.3 9.4E-06 3.2E-10 56.2 9.9 109 187-315 13-131 (159)
195 1klx_A Cysteine rich protein B 98.2 3.8E-05 1.3E-09 52.5 12.5 111 24-145 9-127 (138)
196 1dce_A Protein (RAB geranylger 98.2 0.00013 4.3E-09 62.5 18.3 177 57-238 40-244 (567)
197 3n71_A Histone lysine methyltr 98.2 6.6E-06 2.3E-10 68.8 10.2 87 21-107 320-420 (490)
198 1klx_A Cysteine rich protein B 98.2 4.8E-05 1.6E-09 52.0 12.8 110 60-180 10-127 (138)
199 2l6j_A TPR repeat-containing p 98.2 1.8E-05 6.1E-10 51.5 9.3 92 8-102 2-100 (111)
200 1na3_A Designed protein CTPR2; 98.1 5.3E-05 1.8E-09 47.2 10.3 79 10-90 9-87 (91)
201 2kat_A Uncharacterized protein 98.0 3.4E-05 1.2E-09 50.7 8.8 77 29-107 4-80 (115)
202 2l6j_A TPR repeat-containing p 98.0 2.3E-05 8E-10 51.0 7.9 65 44-109 3-67 (111)
203 1na3_A Designed protein CTPR2; 98.0 6.1E-05 2.1E-09 46.9 9.4 79 45-125 9-87 (91)
204 2kat_A Uncharacterized protein 98.0 6.2E-05 2.1E-09 49.4 9.6 81 62-144 2-82 (115)
205 1zu2_A Mitochondrial import re 98.0 3.1E-05 1.1E-09 53.5 7.6 87 21-109 13-120 (158)
206 1zu2_A Mitochondrial import re 97.9 4E-05 1.4E-09 52.9 7.4 93 57-153 14-127 (158)
207 3ma5_A Tetratricopeptide repea 97.9 8.4E-05 2.9E-09 47.5 8.0 64 9-73 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.8 0.00016 5.5E-09 46.1 8.0 61 45-106 7-67 (100)
209 3ly7_A Transcriptional activat 97.6 0.0016 5.6E-08 51.7 13.2 73 148-224 275-347 (372)
210 3ly7_A Transcriptional activat 97.6 0.0034 1.2E-07 49.9 14.6 63 184-248 276-338 (372)
211 3mkq_A Coatomer beta'-subunit; 97.6 0.021 7.2E-07 51.2 21.3 153 54-245 608-761 (814)
212 3qww_A SET and MYND domain-con 97.5 0.00085 2.9E-08 55.2 10.3 61 46-106 341-408 (433)
213 3qwp_A SET and MYND domain-con 97.5 0.00075 2.6E-08 55.6 9.7 92 52-143 294-399 (429)
214 3qww_A SET and MYND domain-con 97.4 0.0004 1.4E-08 57.1 7.8 82 233-314 311-410 (433)
215 3qwp_A SET and MYND domain-con 97.4 0.00072 2.5E-08 55.7 9.3 60 253-312 331-397 (429)
216 2kc7_A BFR218_protein; tetratr 97.3 0.0017 5.8E-08 40.9 8.3 55 124-179 9-64 (99)
217 2kc7_A BFR218_protein; tetratr 97.2 0.0053 1.8E-07 38.6 9.9 59 16-75 6-65 (99)
218 3bee_A Putative YFRE protein; 97.2 0.0045 1.5E-07 38.7 9.2 65 9-74 5-72 (93)
219 3lvg_A Clathrin heavy chain 1; 97.2 1.9E-06 6.5E-11 69.8 -8.0 148 10-172 54-221 (624)
220 3bee_A Putative YFRE protein; 97.2 0.011 3.8E-07 36.9 10.7 67 43-110 4-73 (93)
221 1wy6_A Hypothetical protein ST 97.2 0.023 8E-07 37.6 14.5 148 153-318 8-157 (172)
222 3mkq_A Coatomer beta'-subunit; 97.0 0.034 1.2E-06 49.9 16.6 102 17-142 606-708 (814)
223 2v5f_A Prolyl 4-hydroxylase su 97.0 0.011 3.9E-07 37.7 9.6 65 9-73 4-74 (104)
224 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0065 2.2E-07 38.9 8.4 63 218-280 3-75 (104)
225 3u64_A Protein TP_0956; tetrat 96.9 0.01 3.6E-07 45.3 10.3 84 97-182 180-272 (301)
226 1pc2_A Mitochondria fission pr 96.9 0.011 3.7E-07 40.5 9.2 83 25-109 13-100 (152)
227 3mkq_B Coatomer subunit alpha; 96.7 0.083 2.9E-06 37.1 16.6 97 56-173 16-112 (177)
228 3mkq_B Coatomer subunit alpha; 96.7 0.088 3E-06 37.0 13.8 130 157-312 12-141 (177)
229 4h7y_A Dual specificity protei 96.7 0.044 1.5E-06 37.1 10.5 100 9-110 12-124 (161)
230 1pc2_A Mitochondria fission pr 96.7 0.027 9.4E-07 38.5 9.7 65 113-178 30-99 (152)
231 4h7y_A Dual specificity protei 96.4 0.12 4.2E-06 35.0 11.2 102 79-182 12-126 (161)
232 3u64_A Protein TP_0956; tetrat 96.3 0.057 1.9E-06 41.3 10.6 92 131-224 179-281 (301)
233 1nzn_A CGI-135 protein, fissio 96.1 0.048 1.6E-06 35.9 8.0 84 25-109 16-103 (126)
234 3lvg_A Clathrin heavy chain 1; 95.8 2.1E-05 7.3E-10 63.9 -10.4 242 44-306 53-324 (624)
235 1nzn_A CGI-135 protein, fissio 95.5 0.13 4.5E-06 33.8 8.4 21 158-178 82-102 (126)
236 4gns_B Protein CSD3, chitin bi 95.5 0.085 2.9E-06 46.4 9.7 126 14-142 252-398 (754)
237 1wy6_A Hypothetical protein ST 95.5 0.3 1E-05 32.5 14.8 149 12-182 7-157 (172)
238 4b4t_P 26S proteasome regulato 95.2 1.1 3.7E-05 37.1 21.1 92 85-176 142-244 (445)
239 4ady_A RPN2, 26S proteasome re 95.1 1.2 4.1E-05 40.4 15.6 50 197-247 536-587 (963)
240 4b4t_P 26S proteasome regulato 94.9 1.4 4.8E-05 36.4 20.5 186 24-212 30-245 (445)
241 4gns_B Protein CSD3, chitin bi 94.8 0.37 1.3E-05 42.6 11.4 55 192-247 344-398 (754)
242 4ady_A RPN2, 26S proteasome re 94.7 2.5 8.5E-05 38.4 17.8 270 20-296 384-671 (963)
243 3ffl_A Anaphase-promoting comp 94.5 0.74 2.5E-05 31.8 10.0 129 118-259 23-163 (167)
244 2ff4_A Probable regulatory pro 94.4 0.28 9.6E-06 39.8 9.4 77 118-195 174-255 (388)
245 2ff4_A Probable regulatory pro 94.4 0.25 8.6E-06 40.0 9.1 73 46-119 172-249 (388)
246 4fhn_B Nucleoporin NUP120; pro 94.4 3.4 0.00012 38.9 17.8 83 117-201 901-987 (1139)
247 4fhn_B Nucleoporin NUP120; pro 93.7 4.7 0.00016 37.9 17.8 187 85-279 817-1049(1139)
248 1v54_E Cytochrome C oxidase po 93.6 0.76 2.6E-05 28.7 8.9 47 63-109 28-74 (109)
249 1v54_E Cytochrome C oxidase po 93.5 0.82 2.8E-05 28.5 9.7 63 25-88 25-87 (109)
250 3ffl_A Anaphase-promoting comp 93.1 0.72 2.5E-05 31.9 8.0 69 4-72 12-90 (167)
251 2y69_E Cytochrome C oxidase su 92.1 1.7 5.9E-05 28.8 8.9 59 63-122 71-129 (152)
252 2y69_E Cytochrome C oxidase su 92.0 1.8 6.1E-05 28.7 9.7 63 25-88 68-130 (152)
253 3o48_A Mitochondria fission 1 91.8 1.9 6.4E-05 28.6 9.3 67 43-109 38-107 (134)
254 3o48_A Mitochondria fission 1 91.6 2 6.8E-05 28.5 9.1 68 77-144 37-107 (134)
255 4b4t_R RPN7, 26S proteasome re 90.9 3.4 0.00012 34.0 11.2 61 47-107 133-195 (429)
256 4b4t_R RPN7, 26S proteasome re 90.8 3.4 0.00012 34.0 11.2 97 12-108 133-236 (429)
257 3eiq_C Programmed cell death p 90.8 3.8 0.00013 32.6 10.8 72 224-295 221-297 (358)
258 2p58_C Putative type III secre 90.7 1.8 6.1E-05 26.9 6.9 80 199-282 21-100 (116)
259 2uwj_G Type III export protein 90.5 2.1 7E-05 26.6 7.2 79 24-110 20-98 (115)
260 2p58_C Putative type III secre 90.3 2.2 7.4E-05 26.6 8.0 79 24-110 21-99 (116)
261 2uwj_G Type III export protein 89.8 1.7 5.8E-05 27.0 6.2 80 199-282 20-99 (115)
262 3txn_A 26S proteasome regulato 89.3 7.6 0.00026 31.4 18.2 167 45-212 19-208 (394)
263 1wdy_A 2-5A-dependent ribonucl 88.9 6 0.00021 29.8 11.7 209 15-244 7-240 (285)
264 1y8m_A FIS1; mitochondria, unk 88.7 4 0.00014 27.4 11.1 68 42-109 36-106 (144)
265 1zbp_A Hypothetical protein VP 87.1 2.7 9.3E-05 31.7 7.2 56 18-74 5-60 (273)
266 1zbp_A Hypothetical protein VP 86.8 2.4 8.1E-05 32.1 6.8 52 126-178 8-59 (273)
267 2zu6_B Programmed cell death p 83.9 13 0.00046 28.8 13.7 74 223-296 169-247 (307)
268 3eiq_C Programmed cell death p 83.2 16 0.00054 29.1 12.4 24 14-37 58-81 (358)
269 2wpv_A GET4, UPF0363 protein Y 82.7 15 0.00052 28.6 20.2 130 120-264 38-178 (312)
270 2ion_A PDCD4, programmed cell 82.3 8.5 0.00029 26.2 7.5 25 188-212 12-36 (152)
271 3lpz_A GET4 (YOR164C homolog); 82.3 16 0.00056 28.7 19.9 190 95-314 11-215 (336)
272 1wdy_A 2-5A-dependent ribonucl 81.7 14 0.00049 27.6 11.1 118 50-184 7-132 (285)
273 1qsa_A Protein (soluble lytic 81.6 26 0.00088 30.4 25.8 111 165-278 229-346 (618)
274 3eu9_A Huntingtin-interacting 81.3 7.5 0.00025 28.3 7.8 16 297-312 218-233 (240)
275 2nsz_A Programmed cell death p 81.2 9.4 0.00032 25.2 8.9 24 189-212 11-34 (129)
276 3esl_A Checkpoint serine/threo 80.5 14 0.00047 26.6 8.9 57 129-185 93-150 (202)
277 3hra_A Ankyrin repeat family p 79.9 12 0.00043 26.3 8.4 15 205-219 158-172 (201)
278 3txn_A 26S proteasome regulato 79.4 23 0.0008 28.6 24.2 231 11-246 20-281 (394)
279 3eu9_A Huntingtin-interacting 79.1 16 0.00054 26.5 8.9 13 53-65 47-59 (240)
280 1y8m_A FIS1; mitochondria, unk 78.0 13 0.00045 25.0 12.6 67 148-214 37-106 (144)
281 3ltm_A Alpha-REP4; protein eng 77.5 17 0.00058 26.0 17.6 60 219-279 125-184 (211)
282 3jxi_A Vanilloid receptor-rela 77.2 8.1 0.00028 28.8 6.9 24 55-78 12-35 (260)
283 3jxi_A Vanilloid receptor-rela 76.3 5.8 0.0002 29.6 5.9 57 16-72 8-73 (260)
284 3lpz_A GET4 (YOR164C homolog); 76.3 26 0.0009 27.5 21.3 168 82-279 37-215 (336)
285 2fu4_A Ferric uptake regulatio 76.0 5.9 0.0002 23.4 4.7 61 35-96 7-68 (83)
286 1mzb_A Ferric uptake regulatio 75.4 5.5 0.00019 26.5 4.9 60 36-96 9-69 (136)
287 2d2s_A Exocyst complex compone 75.2 23 0.00077 26.3 9.2 88 16-106 24-117 (235)
288 2d2s_A Exocyst complex compone 74.9 23 0.00079 26.2 8.9 88 51-141 24-117 (235)
289 2wpv_A GET4, UPF0363 protein Y 74.9 28 0.00095 27.1 18.3 147 152-313 35-215 (312)
290 3esl_A Checkpoint serine/threo 74.2 22 0.00074 25.6 9.4 85 27-113 61-148 (202)
291 3hra_A Ankyrin repeat family p 72.0 17 0.00058 25.5 7.2 159 17-184 9-172 (201)
292 2w57_A Ferric uptake regulatio 71.7 7.1 0.00024 26.5 4.8 61 35-96 7-68 (150)
293 2ion_A PDCD4, programmed cell 71.2 22 0.00074 24.2 7.4 63 119-182 13-77 (152)
294 3eyy_A Putative iron uptake re 71.1 9 0.00031 25.8 5.2 60 35-96 9-68 (145)
295 2zu6_B Programmed cell death p 70.6 35 0.0012 26.5 12.3 94 153-247 169-268 (307)
296 3kea_A K1L; tropism, ANK repea 69.8 34 0.0011 25.9 9.6 177 52-245 35-217 (285)
297 2xig_A Ferric uptake regulatio 66.7 27 0.00092 23.6 7.7 62 34-96 16-77 (150)
298 3ltm_A Alpha-REP4; protein eng 66.0 33 0.0011 24.4 17.7 18 43-60 31-48 (211)
299 2fe3_A Peroxide operon regulat 65.9 27 0.00093 23.4 7.5 62 34-96 11-72 (145)
300 3kae_A CDC27, possible protein 65.9 31 0.0011 24.1 8.8 25 287-311 115-139 (242)
301 1mzb_A Ferric uptake regulatio 65.4 26 0.00091 23.1 6.5 34 96-129 34-67 (136)
302 1k1a_A B-cell lymphoma 3-encod 64.9 37 0.0013 24.6 11.5 20 56-75 17-36 (241)
303 2keb_A DNA polymerase subunit 64.4 22 0.00077 21.9 6.6 31 29-59 28-58 (101)
304 3eyy_A Putative iron uptake re 64.4 25 0.00085 23.6 6.3 34 96-129 33-66 (145)
305 3kea_A K1L; tropism, ANK repea 64.0 45 0.0015 25.2 11.1 202 17-245 35-243 (285)
306 3bu8_A Telomeric repeat-bindin 63.9 39 0.0013 24.5 7.7 20 54-73 123-142 (235)
307 3ltj_A Alpharep-4; protein eng 63.6 36 0.0012 23.9 18.0 77 218-298 119-195 (201)
308 1k1a_A B-cell lymphoma 3-encod 63.3 40 0.0014 24.4 9.8 86 16-105 12-101 (241)
309 1ug3_A EIF4GI, eukaryotic prot 62.9 54 0.0019 25.8 10.6 63 13-77 14-78 (339)
310 1bpo_A Protein (clathrin); cla 62.0 68 0.0023 26.6 11.9 110 24-138 343-452 (494)
311 2fe3_A Peroxide operon regulat 60.9 34 0.0012 22.9 7.6 47 255-301 25-71 (145)
312 2w57_A Ferric uptake regulatio 60.6 31 0.0011 23.3 6.2 34 96-129 33-66 (150)
313 4ets_A Ferric uptake regulatio 60.5 38 0.0013 23.3 7.5 47 255-301 36-84 (162)
314 4aez_C MAD3, mitotic spindle c 59.7 26 0.00087 25.7 5.8 82 29-113 96-183 (223)
315 3mwm_A ZUR, putative metal upt 59.5 20 0.0007 23.8 5.1 57 3-60 7-63 (139)
316 2o03_A Probable zinc uptake re 58.2 23 0.00079 23.2 5.2 45 16-60 16-60 (131)
317 4a1g_A Mitotic checkpoint seri 56.1 45 0.0015 22.7 9.2 70 42-114 65-135 (152)
318 4aez_C MAD3, mitotic spindle c 56.1 34 0.0012 25.0 6.0 52 132-183 131-183 (223)
319 2r9g_A AAA ATPase, central reg 55.9 54 0.0018 23.5 10.7 36 128-164 27-62 (204)
320 4ets_A Ferric uptake regulatio 55.7 26 0.0009 24.1 5.2 48 153-200 35-84 (162)
321 4a1g_A Mitotic checkpoint seri 55.5 46 0.0016 22.6 9.1 71 77-150 65-136 (152)
322 4gq2_M Nucleoporin NUP120; bet 54.8 1.3E+02 0.0045 27.8 11.5 23 225-247 845-867 (950)
323 2fu4_A Ferric uptake regulatio 54.4 30 0.001 20.2 6.6 58 71-129 8-66 (83)
324 2xig_A Ferric uptake regulatio 54.2 47 0.0016 22.4 7.3 47 255-301 30-76 (150)
325 2b7e_A PRE-mRNA processing pro 54.0 15 0.00052 20.2 3.0 28 63-90 4-31 (59)
326 3bge_A Predicted ATPase; struc 53.7 58 0.002 23.3 9.3 37 128-164 20-56 (201)
327 2ijq_A Hypothetical protein; s 52.8 53 0.0018 22.6 7.6 49 265-313 46-102 (161)
328 3mwm_A ZUR, putative metal upt 52.2 35 0.0012 22.6 5.3 47 256-302 18-64 (139)
329 2o03_A Probable zinc uptake re 52.1 38 0.0013 22.1 5.5 47 256-302 15-61 (131)
330 3bu8_A Telomeric repeat-bindin 51.9 66 0.0023 23.4 6.8 49 61-109 88-143 (235)
331 3ygs_P Procaspase 9; apoptosis 51.9 32 0.0011 21.2 4.7 35 234-268 51-85 (97)
332 2cos_A Serine/threonine protei 50.8 25 0.00086 18.8 3.4 39 270-313 9-49 (54)
333 3ltj_A Alpharep-4; protein eng 50.8 61 0.0021 22.7 17.8 18 43-60 26-43 (201)
334 2wvi_A Mitotic checkpoint seri 50.3 60 0.002 22.4 9.1 52 99-150 79-131 (164)
335 3t8k_A Uncharacterized protein 50.0 62 0.0021 22.6 9.0 24 91-114 46-69 (186)
336 2wvi_A Mitotic checkpoint seri 49.2 62 0.0021 22.3 9.5 71 42-115 60-131 (164)
337 2nsz_A Programmed cell death p 48.8 54 0.0018 21.5 9.7 63 119-182 11-75 (129)
338 1ug3_A EIF4GI, eukaryotic prot 48.6 48 0.0016 26.1 6.4 25 83-107 14-38 (339)
339 3pvs_A Replication-associated 48.6 1.1E+02 0.0039 25.2 14.3 55 162-216 267-326 (447)
340 2etb_A Transient receptor pote 48.1 69 0.0024 23.4 7.1 27 17-43 6-32 (256)
341 3f3f_C Nucleoporin NUP85; stru 47.3 1.1E+02 0.0037 26.2 8.3 73 60-134 496-568 (570)
342 2etb_A Transient receptor pote 47.2 81 0.0028 23.1 7.9 26 88-113 7-32 (256)
343 2pnn_A Transient receptor pote 47.1 63 0.0021 24.0 6.8 19 56-74 21-39 (273)
344 3bqo_A Telomeric repeat-bindin 46.9 28 0.00096 24.9 4.1 20 228-247 125-144 (211)
345 2qx5_A Nucleoporin NIC96; mRNA 46.8 1.5E+02 0.0051 26.0 13.5 86 227-312 450-564 (661)
346 2pnn_A Transient receptor pote 46.5 87 0.003 23.2 7.9 21 90-110 20-40 (273)
347 1bpo_A Protein (clathrin); cla 46.1 1.3E+02 0.0044 25.1 14.0 114 129-247 343-456 (494)
348 3ctd_A Putative ATPase, AAA fa 45.9 82 0.0028 22.8 10.3 64 118-181 35-106 (213)
349 4b4t_S RPN3, 26S proteasome re 45.6 1.4E+02 0.0048 25.3 12.3 64 11-74 232-299 (523)
350 3ljn_A Hypothetical protein; a 45.2 1.1E+02 0.0037 24.0 11.1 22 122-143 88-109 (364)
351 2qx5_A Nucleoporin NIC96; mRNA 44.6 1.6E+02 0.0056 25.8 17.4 44 12-57 155-198 (661)
352 4b4t_S RPN3, 26S proteasome re 44.6 1.4E+02 0.0049 25.2 11.8 65 45-109 231-299 (523)
353 1oyz_A Hypothetical protein YI 44.3 97 0.0033 23.1 22.9 218 43-279 35-262 (280)
354 2yru_A Steroid receptor RNA ac 43.9 57 0.002 21.0 5.0 16 263-278 73-88 (118)
355 2f6m_A Suppressor protein STP2 43.9 43 0.0015 18.9 4.3 45 12-57 4-48 (65)
356 3l6a_A Eukaryotic translation 43.5 60 0.002 25.9 6.2 128 119-246 16-148 (364)
357 2qq8_A TBC1 domain family memb 43.2 93 0.0032 24.4 7.3 44 172-215 215-258 (334)
358 3b7b_A Euchromatic histone-lys 42.5 92 0.0031 22.3 9.0 12 300-311 221-232 (237)
359 3ljn_A Hypothetical protein; a 41.7 1.2E+02 0.0042 23.6 9.6 96 9-113 17-114 (364)
360 2rg8_A Programmed cell death p 39.6 46 0.0016 23.0 4.4 24 14-37 14-37 (165)
361 2ijq_A Hypothetical protein; s 39.4 92 0.0031 21.4 8.0 49 59-107 46-102 (161)
362 4gq2_M Nucleoporin NUP120; bet 38.4 2.4E+02 0.0084 26.1 11.0 48 117-164 899-950 (950)
363 1bd8_A P19INK4D CDK4/6 inhibit 38.2 61 0.0021 21.3 5.0 19 17-35 6-24 (156)
364 3f3f_C Nucleoporin NUP85; stru 34.5 1.9E+02 0.0066 24.7 8.0 73 165-239 496-568 (570)
365 2ko4_A Mediator of RNA polymer 34.1 54 0.0019 19.2 3.3 32 5-36 31-62 (81)
366 1bd8_A P19INK4D CDK4/6 inhibit 33.8 83 0.0028 20.6 5.1 18 123-140 7-24 (156)
367 2qfz_A TBC1 domain family memb 33.4 1.7E+02 0.006 22.9 7.5 40 209-248 233-272 (345)
368 2r9g_A AAA ATPase, central reg 33.2 1.3E+02 0.0046 21.5 9.1 17 59-75 28-44 (204)
369 4g8k_A 2-5A-dependent ribonucl 33.2 1.7E+02 0.0056 22.5 13.2 94 205-306 219-318 (337)
370 1qsa_A Protein (soluble lytic 33.0 2.5E+02 0.0084 24.5 31.0 115 130-248 229-347 (618)
371 2p1h_A APAF-1, apoptotic prote 32.7 83 0.0028 19.0 6.8 34 233-266 49-82 (94)
372 2keb_A DNA polymerase subunit 32.5 90 0.0031 19.3 6.3 31 169-199 28-58 (101)
373 2rfa_A Transient receptor pote 32.4 1.4E+02 0.0046 21.3 9.9 50 17-70 7-59 (232)
374 3lxu_X Tripeptidyl-peptidase 2 32.2 3.4E+02 0.012 26.4 9.8 78 62-142 1266-1343(1354)
375 1zl8_A LIN-7; heterodimer, alp 31.3 62 0.0021 17.0 4.2 44 266-311 8-51 (53)
376 2p22_A Suppressor protein STP2 29.9 90 0.0031 21.8 4.5 52 43-95 109-160 (174)
377 4fke_A Aminopeptidase N; zinc 29.7 3.3E+02 0.011 25.0 17.6 163 84-249 690-860 (909)
378 3t5v_B Nuclear mRNA export pro 29.5 1.5E+02 0.005 24.6 6.5 27 14-40 180-206 (455)
379 3t8k_A Uncharacterized protein 29.4 1.4E+02 0.0049 20.7 10.2 93 18-115 11-109 (186)
380 3m0z_A Putative aldolase; MCSG 29.1 50 0.0017 24.2 3.2 79 236-314 147-246 (249)
381 3aji_A 26S proteasome non-ATPa 29.1 1.5E+02 0.0053 20.9 10.5 14 56-69 14-27 (231)
382 3m6y_A 4-hydroxy-2-oxoglutarat 29.0 51 0.0017 24.5 3.2 80 236-315 170-270 (275)
383 3bqo_A Telomeric repeat-bindin 28.9 1E+02 0.0035 22.1 4.6 48 61-109 94-146 (211)
384 1ixm_A SPO0B, protein (sporula 28.6 1.4E+02 0.0047 21.2 5.5 70 235-313 14-85 (192)
385 3e3v_A Regulatory protein RECX 28.0 1.5E+02 0.0053 20.6 9.6 50 97-147 50-99 (177)
386 2rfa_A Transient receptor pote 27.2 1.7E+02 0.0058 20.8 10.2 24 193-216 159-182 (232)
387 1rw2_A ATP-dependent DNA helic 27.2 71 0.0024 21.7 3.6 28 235-262 73-105 (152)
388 2yru_A Steroid receptor RNA ac 26.8 1.3E+02 0.0045 19.4 5.7 41 33-73 49-89 (118)
389 2dzn_A Probable 26S proteasome 26.3 1.5E+02 0.0052 20.9 5.7 13 231-243 182-194 (228)
390 3lxu_X Tripeptidyl-peptidase 2 26.0 4.7E+02 0.016 25.5 10.2 35 162-198 1296-1330(1354)
391 3qil_A Clathrin heavy chain 1; 25.7 1.2E+02 0.0041 19.7 4.1 49 50-101 37-85 (125)
392 2rg8_A Programmed cell death p 25.6 1.7E+02 0.0057 20.2 6.8 70 188-260 13-84 (165)
393 2dzn_A Probable 26S proteasome 25.3 1E+02 0.0035 21.8 4.6 51 17-68 6-56 (228)
394 3twr_A Tankyrase-2; ankyrin re 25.3 1.5E+02 0.0052 19.6 7.7 12 57-68 17-28 (165)
395 2bn5_A PSI; nuclear protein, s 24.8 64 0.0022 15.1 2.4 22 292-313 8-29 (33)
396 3gvo_A Pumilio 2, pumilio homo 24.3 2.6E+02 0.0089 22.0 10.0 89 224-313 218-320 (351)
397 3pvs_A Replication-associated 23.6 3.1E+02 0.011 22.6 13.7 79 127-205 267-350 (447)
398 3c1d_A Protein ORAA, regulator 23.5 1.8E+02 0.0061 19.8 10.1 48 98-147 48-95 (159)
399 3t5v_B Nuclear mRNA export pro 23.2 3.2E+02 0.011 22.6 11.0 62 82-143 178-248 (455)
400 3qye_A TBC1 domain family memb 23.2 2.6E+02 0.0091 21.7 10.2 44 172-215 210-253 (331)
401 3d5l_A Regulatory protein RECX 23.2 2.2E+02 0.0075 20.7 9.8 58 226-284 81-143 (221)
402 3ctd_A Putative ATPase, AAA fa 23.1 2.2E+02 0.0075 20.6 8.4 33 58-90 48-80 (213)
403 3gvo_A Pumilio 2, pumilio homo 23.0 1.8E+02 0.0061 22.9 5.8 86 227-313 185-277 (351)
404 2cwy_A Hypothetical protein TT 22.7 1.4E+02 0.0047 18.2 5.8 16 265-280 15-30 (94)
405 1pbw_A Rhogap domain, phosphat 22.4 2.2E+02 0.0076 20.5 6.2 21 221-241 98-118 (216)
406 1q2z_A ATP-dependent DNA helic 21.7 41 0.0014 21.7 1.6 28 235-262 42-74 (120)
407 1oai_A Nuclear RNA export fact 21.3 94 0.0032 17.0 2.7 21 24-44 34-55 (59)
408 3d9h_A CDNA FLJ77766, highly s 20.9 2.6E+02 0.0091 20.8 6.5 210 12-245 14-244 (285)
409 1eum_A Ferritin 1; ECFTNA, met 20.6 2.1E+02 0.0071 19.5 6.1 58 252-311 99-156 (165)
410 2e2a_A Protein (enzyme IIA); h 20.5 1.7E+02 0.0058 18.4 4.2 19 296-314 30-48 (105)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.1e-36 Score=250.97 Aligned_cols=197 Identities=16% Similarity=0.175 Sum_probs=178.6
Q ss_pred CCCCCCcchH-hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHH
Q 020976 2 ICGDLTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR---------LRTARWILKEL 71 (319)
Q Consensus 2 ~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~ 71 (319)
++.+..+++. .++.+|++|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 4455555544 5888999999999999999999999999999999999999999987664 67899999999
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChh
Q 020976 72 GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151 (319)
Q Consensus 72 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (319)
...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (319)
+|+.++.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999988764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.9e-35 Score=247.52 Aligned_cols=207 Identities=14% Similarity=0.168 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---------h
Q 020976 27 DNALRMFRGLQKHGFVPEL-VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK---------Y 96 (319)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 96 (319)
..+..+.+.+.+.+..+++ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|.+.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456666777777766554 46889999999999999999999999999999999999999999987654 6
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
+.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 020976 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233 (319)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (319)
.+.|+.||..||+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988753
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-32 Score=235.11 Aligned_cols=307 Identities=12% Similarity=-0.010 Sum_probs=194.3
Q ss_pred CCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-----------------------------------------
Q 020976 4 GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV----------------------------------------- 42 (319)
Q Consensus 4 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------------------------------- 42 (319)
.|.+++..+|+.++.+|.+.|++++|+++|+++.+.+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 355678899999999999999999999999998765422
Q ss_pred -----------------------------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 020976 43 -----------------------------PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93 (319)
Q Consensus 43 -----------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (319)
++..+++.++..|.+.|++++|.++|+++.+.+.. +..++..++.++.+.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHES 352 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHh
Confidence 34445555555555566666666666655544322 455555566666666
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976 94 RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (319)
|++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|
T Consensus 353 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666555443 4455566666666666666666666666665532 234556666666666666666666666
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----
Q 020976 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---- 249 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 249 (319)
+++.+.+. .+..++..++.+|.+.|++++|..+|+.+.+.. +.+..++..++..|.+.|++++|.++|+++...
T Consensus 431 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 431 TTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 66665432 255566666666666666666666666666553 345566666666666666666666666665321
Q ss_pred ----C--chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 250 ----D--SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 250 ----~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.+
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 1 3456666666666666666666666666553 2356666666666666666666666666665544
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-31 Score=232.73 Aligned_cols=284 Identities=13% Similarity=0.008 Sum_probs=253.6
Q ss_pred CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+++..+|+.++..|.+.|++++|+++|+++.+.+.. +..++..++.++.+.|++++|.++++++.... +.+..+++.+
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 589999999999999999999999999999987543 78899999999999999999999999998653 4478899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCH
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
+..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++...+ +.+..+|..++.+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 999999999999999999998864 5567899999999999999999999999999873 45788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCCHHHHH
Q 020976 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDSN--LEAYNCIVDRLGKDGKIDHAI 240 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~ 240 (319)
++|.++|+++.+.... +..+|..++..+.+.|++++|..+|+++.+. +..|+ ..++..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999987544 7889999999999999999999999999876 55677 689999999999999999999
Q ss_pred HHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976 241 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 296 (319)
Q Consensus 241 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (319)
+.|+++... ++.+|..+..+|...|++++|.+.|+++.+.... +...+..+..+|
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~ 594 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 999987643 7789999999999999999999999999986432 566676666554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.4e-27 Score=194.77 Aligned_cols=302 Identities=12% Similarity=0.015 Sum_probs=220.1
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+..+|..+...+.+.|++++|++.|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3556677777777777777777777777766432 24556777777777777777777777777664322 345566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
..+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++...+ +.+...+..+...+...|+++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 66777777777777777776653 4445667777777777777777777777777653 334566777777777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
+|...+++.....+. +..++..+...+...|++++|...++++.+.+ +.+..++..+..++.+.|++++|.+.|+++.
T Consensus 221 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 877777777765433 56677888888888888888888888888764 4456778888888888888888888888776
Q ss_pred cC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
.. ++.++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.++++.+..
T Consensus 299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 43 66788888888888889999998888887752 3356788888888889999999999888877654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.5e-26 Score=187.82 Aligned_cols=301 Identities=12% Similarity=0.003 Sum_probs=261.6
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|.+.|+++.... +.+..+|..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 45567778888899999999999999988764 4478899999999999999999999999998753 225678999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.... +.+..+|..+...+...|++++
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998874 4455667788888999999999999999998863 3457889999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (319)
|...|+++.+.++. +...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.|+++..
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 188 AIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999987544 56788899999999999999999999998864 44678889999999999999999999998875
Q ss_pred C---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 249 K---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 249 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
. ++.+|..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+..
T Consensus 266 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4 56789999999999999999999999999873 4578899999999999999999999999986643
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=4.4e-26 Score=190.84 Aligned_cols=304 Identities=11% Similarity=0.041 Sum_probs=258.8
Q ss_pred CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+.++..+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.+.. +..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 3466778999999999999999999999998863 347899999999999999999999999999986533 68899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCc---ccHHHH------------HHHHHHcCchHHHHHHHHHHHhCCCccChh
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDG---FGYCTV------------IAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (319)
..++.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...|+++.... +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 999999999999999999999874 3334 555555 344888999999999999998863 45778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH-----
Q 020976 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI----- 226 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 226 (319)
++..+..++...|++++|.+.|+++.+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 8999999999999999999999999876433 67889999999999999999999999998764 3344444444
Q ss_pred -------HHHHHhcCCHHHHHHHHHhhccCC-------chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976 227 -------VDRLGKDGKIDHAINVFESMEVKD-------SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292 (319)
Q Consensus 227 -------~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (319)
...+...|++++|...|+++...+ ...+..+...+.+.|++++|...++++.+.. +.+...+..+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 788999999999999999886542 2378888999999999999999999998763 3378899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976 293 VDGLRHSGCRREAKKIQSKIRMAKI 317 (319)
Q Consensus 293 ~~~~~~~g~~~~a~~~~~~~~~~~i 317 (319)
..+|...|++++|.+.++++.+...
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999876543
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=2.8e-23 Score=168.39 Aligned_cols=303 Identities=11% Similarity=0.021 Sum_probs=254.9
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
|+..+..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...++++.+... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 567888899999999999999999999988644 3788999999999999999999999999988643 26788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC---CCcccHHHH------------HHHHHHcCchHHHHHHHHHHHhCCCccChhhH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYT---FDGFGYCTV------------IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
++...|++++|...++++.+.. + .+...+..+ ...+...|++++|...++++.... +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999998774 3 344555544 578889999999999999998863 4577889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH---------
Q 020976 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN--------- 224 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 224 (319)
..+..++...|++++|...+++..+..+. +...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 99999999999999999999999987533 67889999999999999999999999998864 33333332
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHhhccC---Cc----hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976 225 ---CIVDRLGKDGKIDHAINVFESMEVK---DS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294 (319)
Q Consensus 225 ---~l~~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (319)
.+...+...|++++|...++++... ++ ..+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 2366788999999999999987654 22 235567788999999999999999999863 337889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhhcc
Q 020976 295 GLRHSGCRREAKKIQSKIRMAKIS 318 (319)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~i~ 318 (319)
++...|++++|.+.+++..+....
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999998876543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.3e-23 Score=172.16 Aligned_cols=297 Identities=14% Similarity=0.072 Sum_probs=243.7
Q ss_pred CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh---hhH
Q 020976 7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA---ITY 83 (319)
Q Consensus 7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 83 (319)
+.+..+|..+...+...|++++|+..|+++.+.+.. +..++..+...|.+.|++++|.+.|+++...... +. ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 346788999999999999999999999999987543 6889999999999999999999999999886322 33 555
Q ss_pred HHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChh
Q 020976 84 TTI------------MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 151 (319)
Q Consensus 84 ~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (319)
..+ ...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|...|+++.... +.+..
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 212 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 555 444889999999999999999875 5678889999999999999999999999998762 45678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH------------HHHHhccCChhHHHHHHHHHHhcCCCCC
Q 020976 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL------------IDGLCKAGNIKGARLHLEYMNKIGFDSN 219 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (319)
++..+..++...|++++|...|+++.+..+. +...+..+ ...+...|++++|...++.+.+.. |+
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~ 289 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS 289 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence 8999999999999999999999999876433 34444444 788999999999999999999864 44
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHHhhcc--C-CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHH
Q 020976 220 -----LEAYNCIVDRLGKDGKIDHAINVFESMEV--K-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 291 (319)
Q Consensus 220 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (319)
...+..+..++.+.|++++|...++++.. + ++..|..+..+|...|++++|...++++++.... +...+..
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 368 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREG 368 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHH
Confidence 34788889999999999999999998763 2 6789999999999999999999999999885322 4556666
Q ss_pred HHHH------------HHhcC-----CHHHHHHHHHH
Q 020976 292 VVDG------------LRHSG-----CRREAKKIQSK 311 (319)
Q Consensus 292 l~~~------------~~~~g-----~~~~a~~~~~~ 311 (319)
+..+ |...| ..+++.+.+++
T Consensus 369 l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 369 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 6532 33344 55666766665
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.4e-22 Score=162.43 Aligned_cols=293 Identities=11% Similarity=-0.048 Sum_probs=245.8
Q ss_pred CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976 5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84 (319)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
+++.+...+..+...+...|++++|+++|+++.+... .+...+..++..+...|++++|..+++++.+... .+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHH
Confidence 4566777888899999999999999999999988643 3667777888899999999999999999988643 3678899
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976 85 TIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163 (319)
Q Consensus 85 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
.+...+...| ++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999875 5567889999999999999999999999998863 33567788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC--------CCCChhhHHHHHHHHHhcCC
Q 020976 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG--------FDSNLEAYNCIVDRLGKDGK 235 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 235 (319)
|++++|.+.+++..+.... +...+..+...+...|++++|...++...+.. .+....++..+..++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999987543 67888999999999999999999999988642 13345788999999999999
Q ss_pred HHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHH-HhcCCHH
Q 020976 236 IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL-RHSGCRR 303 (319)
Q Consensus 236 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 303 (319)
+++|...+++.... ++..+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999987643 77889999999999999999999999988753 23677788888877 4566554
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-22 Score=172.46 Aligned_cols=300 Identities=10% Similarity=-0.039 Sum_probs=252.9
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
....|......+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|.+.++++.+.++ .+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 35667888899999999999999999999864 7899999999999999999999999999998653 36789999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCc-----------------------------------------------------
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDG----------------------------------------------------- 115 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------------------------------- 115 (319)
++...|++++|...|+++...+ +++.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999988764 2221
Q ss_pred --------------------------ccHHHHHHHHHH---cCchHHHHHHHHHHHh-----CCC--------ccChhhH
Q 020976 116 --------------------------FGYCTVIAAFVK---IGRLKEATDYMEQMVT-----DGV--------QLDIVSY 153 (319)
Q Consensus 116 --------------------------~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 153 (319)
..+......+.. .|++++|...|+++.. ... +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 112222222333 7999999999999887 311 2345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 020976 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (319)
..+...+...|++++|...++++.+.... ...+..+...+...|++++|...++.+.+.. +.+..++..+..++...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 88899999999999999999999987544 7788899999999999999999999998864 55678899999999999
Q ss_pred CCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976 234 GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310 (319)
Q Consensus 234 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 310 (319)
|++++|...+++.... ++..+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999987643 67789999999999999999999999998863 3367788999999999999999999999
Q ss_pred HHHhhh
Q 020976 311 KIRMAK 316 (319)
Q Consensus 311 ~~~~~~ 316 (319)
++.+..
T Consensus 397 ~a~~~~ 402 (514)
T 2gw1_A 397 LAIELE 402 (514)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887654
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-22 Score=172.54 Aligned_cols=306 Identities=9% Similarity=-0.069 Sum_probs=184.2
Q ss_pred CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-------
Q 020976 7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN------- 79 (319)
Q Consensus 7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------- 79 (319)
.|+..+|..+..++.+.|++++|++.|+++.+.++ .+..++..+..++...|++++|...|+++...+...+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 37888888888999999999999999998887643 3677888888888888888888888888765432100
Q ss_pred -----------------------------------------------------------------------hhhHHHHHH
Q 020976 80 -----------------------------------------------------------------------AITYTTIMK 88 (319)
Q Consensus 80 -----------------------------------------------------------------------~~~~~~l~~ 88 (319)
...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 111122222
Q ss_pred HHHh---cCChhHHHHHHHHHHh-----CCC--------CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC-------
Q 020976 89 CCFR---NRKYKLGLEILSAMKR-----KGY--------TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG------- 145 (319)
Q Consensus 89 ~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 145 (319)
.+.. .|++++|...++++.+ ..- +.+...+..+...+...|++++|...++++....
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 274 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI 274 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 2222 4556666666655554 200 1123344445555555555555555555544432
Q ss_pred -------------------------CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC
Q 020976 146 -------------------------VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200 (319)
Q Consensus 146 -------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (319)
.+.+...+..+...+...|++++|...+++..+.... +...+..+...+...|+
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCC
Confidence 1223444555555555566666666666665554322 34455556666666666
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---C------chhHHHHHHHHHc---cCChh
Q 020976 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D------SFTYSSMVHNLCK---AKRLP 268 (319)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~------~~~~~~l~~~~~~---~~~~~ 268 (319)
+++|...++.+.+.. +.+..++..+...+...|++++|...++++... + ...+..+...+.. .|+++
T Consensus 354 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 354 FDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 666666666665542 334455666666666666666666666655432 2 2266666666776 67777
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
+|...++++.... +.+...+..+..++.+.|++++|.+.+++..+.+
T Consensus 433 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 433 EATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 7777777766653 2245666667777777777777777777665543
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=9.2e-22 Score=157.71 Aligned_cols=270 Identities=10% Similarity=-0.077 Sum_probs=233.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 020976 41 FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120 (319)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (319)
.+.+...+..+...+...|++++|.++|+++..... .+...+..++.++...|++++|...++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 345677888899999999999999999999988643 367778888899999999999999999999875 557788999
Q ss_pred HHHHHHHcC-chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976 121 VIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199 (319)
Q Consensus 121 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
+...+...| ++++|...|++..... +.+...+..+..++...|++++|...+++..+.... +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999863 446778999999999999999999999999987544 4566777999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc-----------C-CchhHHHHHHHHHccCCh
Q 020976 200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-----------K-DSFTYSSMVHNLCKAKRL 267 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~ 267 (319)
++++|...++...+.. +.+...+..+...+...|++++|...+++... + .+..+..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999875 55678899999999999999999999987753 2 457899999999999999
Q ss_pred hHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
++|...+++..+... .+...+..+..++.+.|++++|.+.+++..+..
T Consensus 253 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 253 AEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999998643 367889999999999999999999999876654
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=5.9e-21 Score=163.26 Aligned_cols=228 Identities=12% Similarity=0.020 Sum_probs=162.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 020976 83 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (319)
+..+...+...|++++|.+.+++..+. .|+...+..+...+...|++++|...++++.... +.+..++..+...+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 344445555666777777777776665 3445666666777777777777777777776652 3356677777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 020976 163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 242 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (319)
.|++++|...+++..+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 88888888888887766433 45667777777888888888888888877764 44566777778888888888888888
Q ss_pred HHhhccC---C------chhHHHHHHHHHcc----------CChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHH
Q 020976 243 FESMEVK---D------SFTYSSMVHNLCKA----------KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303 (319)
Q Consensus 243 ~~~~~~~---~------~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (319)
++++... + ...+......+... |++++|...++++.+... .+...+..+..+|.+.|+++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHH
Confidence 8776532 1 12233444566666 888888888888877632 36678888999999999999
Q ss_pred HHHHHHHHHHhhh
Q 020976 304 EAKKIQSKIRMAK 316 (319)
Q Consensus 304 ~a~~~~~~~~~~~ 316 (319)
+|.+.|++..+..
T Consensus 480 ~A~~~~~~al~~~ 492 (537)
T 3fp2_A 480 EAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999998876654
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=3.7e-22 Score=162.62 Aligned_cols=288 Identities=8% Similarity=-0.056 Sum_probs=228.4
Q ss_pred HhhcCChHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976 20 LCKNRYTDNALR-MFRGLQKHGFV---PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 20 ~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
+...|++++|++ .|++....... .+...+..+...+...|++++|...|+++.+... .+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 445578888888 77765543221 1356788899999999999999999999998743 378889999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH---------------HHHHH
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT---------------LINLY 160 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 160 (319)
+++|.+.++++.+.. +.+..++..+..++...|++++|...++++..... .+...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998875 56788899999999999999999999999988632 22222221 23344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 020976 161 CKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (319)
...|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48999999999999998864432 47788999999999999999999999998874 45678899999999999999999
Q ss_pred HHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc----------CHHHHHHHHHHHHhcCCHHHHH
Q 020976 240 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI----------LKSAQKAVVDGLRHSGCRREAK 306 (319)
Q Consensus 240 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~ 306 (319)
...++++... ++..+..+...|...|++++|...++++.+..... ...+|..+..+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999987643 66789999999999999999999999988752221 1678999999999999999999
Q ss_pred HHHHH
Q 020976 307 KIQSK 311 (319)
Q Consensus 307 ~~~~~ 311 (319)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88764
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=3.2e-20 Score=150.37 Aligned_cols=285 Identities=13% Similarity=0.047 Sum_probs=233.0
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CChhhHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTT 85 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 85 (319)
.+..+|..+...+...|++++|+..|+++.+... .+...+..+...+...|++++|...|+++.+.... .+...+..
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 4577899999999999999999999999988643 37789999999999999999999999999886320 14445554
Q ss_pred H------------HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhH
Q 020976 86 I------------MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 153 (319)
Q Consensus 86 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
+ ...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.... +.+..++
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 191 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 4 578889999999999999998875 5677889999999999999999999999999873 5577889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH------------HHHHHHhccCChhHHHHHHHHHHhcCCCCCh-
Q 020976 154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT------------ILIDGLCKAGNIKGARLHLEYMNKIGFDSNL- 220 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 220 (319)
..+...+...|++++|...+++..+..+. +...+. .+...+...|++++|...++.+.+.. +.+.
T Consensus 192 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 269 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAE 269 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchH
Confidence 99999999999999999999999876433 333332 23666889999999999999998864 2222
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976 221 ---EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294 (319)
Q Consensus 221 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (319)
..+..+..++...|++++|...+++.... ++..+..+...+...|++++|...|+++.+... .+...+..+..
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 348 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHH
Confidence 23556778999999999999999987643 678899999999999999999999999998632 24556666655
Q ss_pred HHHh
Q 020976 295 GLRH 298 (319)
Q Consensus 295 ~~~~ 298 (319)
+...
T Consensus 349 ~~~~ 352 (359)
T 3ieg_A 349 AQRL 352 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.4e-20 Score=161.01 Aligned_cols=301 Identities=12% Similarity=0.028 Sum_probs=241.4
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
....|..+...+.+.|++++|++.|+++.+..+ .+..++..+..++.+.|++++|.+.|+++....+ .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 346688889999999999999999999998753 4789999999999999999999999999988653 37888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC------------------------------------CCccc---------------
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYT------------------------------------FDGFG--------------- 117 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~~--------------- 117 (319)
++...|++++|.+.|+.+....-. |+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999999644211100 00000
Q ss_pred -----------HHHHHHHHH------------HcCchHHHHHHHHHHHhCCCccC-------hhhHHHHHHHHHhcCCHH
Q 020976 118 -----------YCTVIAAFV------------KIGRLKEATDYMEQMVTDGVQLD-------IVSYNTLINLYCKEGKLE 167 (319)
Q Consensus 118 -----------~~~ll~~~~------------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~ 167 (319)
+..+...+. ..|++++|..+++++.... +.+ ..++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 000111111 1247889999999988753 222 234667778888999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
+|...+++..+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999986 4557788899999999999999999999999875 5567889999999999999999999999876
Q ss_pred cC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
.. ++..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 43 67789999999999999999999999999874 3367789999999999999999999999986654
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=1.3e-20 Score=153.39 Aligned_cols=264 Identities=10% Similarity=-0.056 Sum_probs=223.7
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++|.+.|+++..... .+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 356688899999999999999999999998744 4788999999999999999999999999988653 37889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHH---------------HHHHHHHcCchHHHHHHHHHHHhCCCcc-Chhh
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT---------------VIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVS 152 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 152 (319)
++...|++++|.+.++++.... +.+...+.. .+..+...|++++|...++++....... +..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 9999999999999999999874 333333321 2334448899999999999998863211 4788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 232 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (319)
+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+.. +.+..++..+..+|..
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 999999999999999999999999887433 67789999999999999999999999998874 5567889999999999
Q ss_pred cCCHHHHHHHHHhhccC---C-----------chhHHHHHHHHHccCChhHHHHHHHHH
Q 020976 233 DGKIDHAINVFESMEVK---D-----------SFTYSSMVHNLCKAKRLPSASKLLLSC 277 (319)
Q Consensus 233 ~~~~~~a~~~~~~~~~~---~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (319)
.|++++|...|+++... + ..+|..+..+|...|++++|..++++.
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999987643 3 578999999999999999999887643
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=4.2e-21 Score=156.26 Aligned_cols=264 Identities=10% Similarity=-0.037 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
+...+..+...+.+.|++++|.+.|+++..... .+..++..+..++...|++++|++.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 334455556666666666666666666655432 245566666666666666666666666665543 334555666666
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHhHHHHH
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLD----------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILI 192 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 192 (319)
++...|++++|...++++.... +.+ ...+..+...+...|++++|...++++.+..+. ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 6666666666666666665531 111 112233456666667777777777766665322 1455666666
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhH
Q 020976 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPS 269 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 269 (319)
..+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|++.... ++.++..+...|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 66667777777777777766653 345566677777777777777777777665432 45566777777777777777
Q ss_pred HHHHHHHHHHcCCc-----------cCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 270 ASKLLLSCLKSGVR-----------ILKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 270 a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
|...++++++.... .+...|..+..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777776654211 1246677777788888888777766543
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=3.2e-21 Score=156.97 Aligned_cols=261 Identities=9% Similarity=-0.082 Sum_probs=200.4
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...|..+...+.+.|++++|++.|+++.+... .+..+|..+...+...|++++|.+.|+++..... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 455688888888899999999999998887643 3778888888999999999999999998887542 35788888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH----------HHHHHHcCchHHHHHHHHHHHhCCCc-cChhhHHHHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV----------IAAFVKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLI 157 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 157 (319)
++...|++++|.+.++++.+.. +.+...+..+ ...+...|++++|...++++...... ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 8999999999999998888764 3333444333 66778888899999999988876321 1577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976 158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 237 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (319)
..+...|++++|.+.+++..+..+. +..++..+..++...|++++|...++++.+.. +.+..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 8888999999999999988876433 67788888888889999999999998888764 445778888888899999999
Q ss_pred HHHHHHHhhccC---------------CchhHHHHHHHHHccCChhHHHHHH
Q 020976 238 HAINVFESMEVK---------------DSFTYSSMVHNLCKAKRLPSASKLL 274 (319)
Q Consensus 238 ~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (319)
+|...|++.... +...|..+..++...|+.+.+..+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999888876532 2567888888888888887776554
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=9.6e-21 Score=151.57 Aligned_cols=277 Identities=11% Similarity=-0.031 Sum_probs=171.4
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+...|++++|+.+|+++.+... .+..++..+...+...|++++|.+.++++.... +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 344556666777777777777777777766533 256667777777777777777777777776653 225666777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHH-HH-HHHhcCCH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL-IN-LYCKEGKL 166 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 166 (319)
.+...|++++|.+.++++.+.. +.+...+..+.... |+......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 7777777777777777776653 22333332221000 000001111 11 24455666
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666554322 45556666666666666666666666666543 334556666666667777777777776665
Q ss_pred ccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 247 EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-----------LKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 247 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
... +...+..+...+...|++++|...++++....... +...+..+..++.+.|++++|..++++.
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 432 45667777777888888888888888777653221 4678888889999999999998887653
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=2.4e-20 Score=149.28 Aligned_cols=232 Identities=9% Similarity=-0.071 Sum_probs=153.7
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH-
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI- 86 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 86 (319)
.+..+|..+...+...|++++|...|+++.+... .+..++..+...+...|++++|.+.++++...... +...+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 130 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNL 130 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHh
Confidence 3667888999999999999999999999988643 37889999999999999999999999999886432 34444443
Q ss_pred -------------HH-HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhh
Q 020976 87 -------------MK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152 (319)
Q Consensus 87 -------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (319)
.. .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 208 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQL 208 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHH
Confidence 22 2555666777777777666553 3455666666666677777777777777666542 234556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-----------Chh
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-----------NLE 221 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~ 221 (319)
+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+..... +..
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS 287 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHH
Confidence 666666666677777777777666654322 45556666666666666666666666665542110 244
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 020976 222 AYNCIVDRLGKDGKIDHAINVFE 244 (319)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~ 244 (319)
++..+..++...|++++|..+++
T Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 288 MWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 55555555555555555555544
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.3e-19 Score=142.20 Aligned_cols=275 Identities=10% Similarity=-0.002 Sum_probs=214.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+......|+++.|+..++........+.......+.++|...|+++.|...++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 455677899999999988765542222234556778999999999999986654 2 356788889999999999999
Q ss_pred hHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 97 KLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
++|++.++++...+..| ++..+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998876444 556667777899999999999999987 45778899999999999999999999999
Q ss_pred HHHcCCCCcHHhH---HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---
Q 020976 176 MEKQGFECDKYTH---TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 249 (319)
Q Consensus 176 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 249 (319)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++...
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99874 443211 223344455689999999999999874 678889999999999999999999999987643
Q ss_pred CchhHHHHHHHHHccCChhH-HHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 020976 250 DSFTYSSMVHNLCKAKRLPS-ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 309 (319)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 309 (319)
++.++..++..+...|+.++ +.++++++++. .|+... +.+...+.+.++++..-|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 77889999999999999876 57899998876 343322 234455666666665433
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=2.7e-19 Score=140.45 Aligned_cols=255 Identities=15% Similarity=0.111 Sum_probs=205.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCch
Q 020976 52 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131 (319)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 131 (319)
++.....|+++.|+..++........+.......+.++|...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 344567899999999998876542222234556778999999999999986654 2 366777888888999999999
Q ss_pred HHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHH
Q 020976 132 KEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210 (319)
Q Consensus 132 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (319)
++|++.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|...++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998876434 566677778999999999999999987 35777889999999999999999999999
Q ss_pred HHhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976 211 MNKIGFDSNLEAY---NCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284 (319)
Q Consensus 211 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (319)
+.+.. |+.... ...+..+...|++++|..+|+++... ++..++.+..++...|++++|...+++.+.... -
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 99874 543211 22334445569999999999988653 778899999999999999999999999998743 3
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhhccC
Q 020976 285 LKSAQKAVVDGLRHSGCRRE-AKKIQSKIRMAKISH 319 (319)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~i~h 319 (319)
++.++..++..+...|+.++ +.++++++.+.+..|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 78899999999999999976 678999998877665
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=3.5e-21 Score=167.22 Aligned_cols=151 Identities=14% Similarity=0.223 Sum_probs=125.8
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQK---HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
-..|||++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC------hhhHHHHHH
Q 020976 86 IMKCCFRNRKY-KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD------IVSYNTLIN 158 (319)
Q Consensus 86 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 158 (319)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. .+++..+++ ..+..|+ ..+...|..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998765553 344444444 2234433 444555666
Q ss_pred HHHhcC
Q 020976 159 LYCKEG 164 (319)
Q Consensus 159 ~~~~~~ 164 (319)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=3.1e-20 Score=149.53 Aligned_cols=238 Identities=12% Similarity=0.083 Sum_probs=64.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976 22 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
+.|++++|.++++++. ++.+|..++.++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3444555555555552 1235555555555555555555555431 344455555555555555555555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 020976 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181 (319)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (319)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 44444432 3334455555555555555555554442 134445555555555555555555555543
Q ss_pred CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHH
Q 020976 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL 261 (319)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 261 (319)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Y 217 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYY 217 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHH
Confidence 24555555555555555555555544 134555555555555555555544444333 2333334455555
Q ss_pred HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 020976 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297 (319)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (319)
.+.|++++|..+++..+... +-....|+.+..+|+
T Consensus 218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 55555555555555554332 223344444444443
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=160.30 Aligned_cols=150 Identities=17% Similarity=0.258 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHH
Q 020976 80 AITYTTIMKCCFRNRKYKLGLEILSAMKR---KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 156 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (319)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45799999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC------hhhHHHHHHH
Q 020976 157 INLYCKEGKL-EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN------LEAYNCIVDR 229 (319)
Q Consensus 157 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 229 (319)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+.+..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999884 78899999999999999999999887655443 333333333 2234443 3444556666
Q ss_pred HHhcC
Q 020976 230 LGKDG 234 (319)
Q Consensus 230 ~~~~~ 234 (319)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66554
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1e-15 Score=129.40 Aligned_cols=273 Identities=13% Similarity=0.065 Sum_probs=156.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cC
Q 020976 23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NR 94 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 94 (319)
.+++++|+..|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 344444444444444332 23334444444443 344444444444444432 34444444444444 44
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----cCCH
Q 020976 95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGKL 166 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 166 (319)
++++|.+.|++..+.+ ++..+..+...|.. .+++++|..+|++..+.| +...+..+...+.. .+++
T Consensus 202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence 5555555555544443 23334444444443 455555555555555442 33344455555555 5666
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc-----CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---CHHH
Q 020976 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-----GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG---KIDH 238 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~ 238 (319)
++|..+|++..+.| +...+..+...+... +++++|...+++..+.+ +...+..+...|...| ++++
T Consensus 276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence 66666666665543 334455555555554 67777777777766654 3345555666665545 6777
Q ss_pred HHHHHHhhccC-CchhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 020976 239 AINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQ 309 (319)
Q Consensus 239 a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 309 (319)
|.+.|++.... ++..+..+...|.. .+++++|...|++..+.| ++..+..+...|.. .++.++|..+|
T Consensus 350 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 350 AVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77777766544 66777777777777 778888888888887764 45667777777777 78888888888
Q ss_pred HHHHhhh
Q 020976 310 SKIRMAK 316 (319)
Q Consensus 310 ~~~~~~~ 316 (319)
++..+.+
T Consensus 427 ~~A~~~~ 433 (490)
T 2xm6_A 427 DTASTND 433 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHCC
Confidence 8877665
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=3.1e-19 Score=143.79 Aligned_cols=266 Identities=9% Similarity=-0.006 Sum_probs=133.4
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
+++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|.+.++..++. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 45579999999999999999999999653 57789999999999999999999988877764 45678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999988884 467789999999999999999999999976 46999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
+|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|++++|..+++...
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999988 27889999999999999999996554432 2333445678899999999999999999877
Q ss_pred cC---CchhHHHHHHHHHccCChhHHHHHHHHHHH-cCCcc------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 020976 248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK-SGVRI------LKSAQKAVVDGLRHSGCRREAKKIQ 309 (319)
Q Consensus 248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 309 (319)
.. ....|+-+...|++- ++++..+.++.... .+++| +...|..+.-.|.+.++++.|....
T Consensus 235 ~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 235 GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 55 455677777777664 34444444443332 23444 4568899999999999999887643
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=5.5e-18 Score=127.38 Aligned_cols=198 Identities=15% Similarity=0.024 Sum_probs=105.9
Q ss_pred CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+++...+..+...+.+.|++++|+..|++..+..+. +...+..+...+.+.|++++|...|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 566677777777777777777777777777765332 6667777777777777777777777777765322 55666666
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976 87 MKCCFRN-----------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155 (319)
Q Consensus 87 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
..++... |++++|+..+++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 55555555555554442 2234444444455555555555555555554443 34444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHH
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 210 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (319)
+..++...|++++|...|++..+..+. +...+..+...+...|++++|...+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555555443222 333444444444555555555444443
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=2.2e-15 Score=127.39 Aligned_cols=289 Identities=13% Similarity=0.053 Sum_probs=146.4
Q ss_pred chHhHHHHHHHHhh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCh
Q 020976 9 CTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNA 80 (319)
Q Consensus 9 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (319)
++.++..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.++|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555555 566666666666655542 34455555555555 556666666666655542 34
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCccChhh
Q 020976 81 ITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVS 152 (319)
Q Consensus 81 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (319)
..+..+...|.. .+++++|.+.|++..+.| ++..+..+...|.. .+++++|...|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555555555 455566666665555544 23344444444544 445555555555555442 3344
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC---------------------------------CcHHhHHHHHHHH
Q 020976 153 YNTLINLYCK----EGKLEAAYLLLDEMEKQGFE---------------------------------CDKYTHTILIDGL 195 (319)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~ 195 (319)
+..+...|.. .++.++|.++|++..+.+.. .+...+..+...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444444 45555555555554443210 1222333333333
Q ss_pred hc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHhhccC-CchhHHHHHHHHHccC
Q 020976 196 CK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD-----GKIDHAINVFESMEVK-DSFTYSSMVHNLCKAK 265 (319)
Q Consensus 196 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~ 265 (319)
.. .+++++|...|+...+.+ +...+..+...|... +++++|...+++.... ++..+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 33 445555555555544432 223344444444444 5555555555554433 4444445555554433
Q ss_pred ---ChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 020976 266 ---RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMA 315 (319)
Q Consensus 266 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 315 (319)
++++|.++|++..+.| ++..+..+...|.. .+++++|.++|++..+.
T Consensus 343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 4555666666555542 34455555666655 56666666666665444
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.6e-17 Score=126.98 Aligned_cols=224 Identities=13% Similarity=0.039 Sum_probs=146.7
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CC----hhhH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PN----AITY 83 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 83 (319)
...|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|.+.+++....... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777778888888888888888877765 57777778888888888888888888777653211 11 4667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976 84 TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
..+..++...|++++|.+.+++..+. .|+ ...+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 77777777777787787777777765 233 234555667777777777776642 33445566666677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976 164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (319)
|++++|...+++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777776665332 45566666666666666666666666666543 333455555555555555555555555
Q ss_pred Hhhc
Q 020976 244 ESME 247 (319)
Q Consensus 244 ~~~~ 247 (319)
++..
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=1.6e-17 Score=124.78 Aligned_cols=200 Identities=13% Similarity=0.005 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 020976 42 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
+++...+..+...+...|++++|...|++..+..+ .+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45677788888888888888888888888887643 367788888888888888888888888888775 5566777888
Q ss_pred HHHHHHc-----------CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH
Q 020976 122 IAAFVKI-----------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190 (319)
Q Consensus 122 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (319)
..++... |++++|+..+++..+.. |.+...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 88888888888877752 3356677777788888888888888888887766 46777777
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
+..++...|++++|...++...+.. +.+...+..+..++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888877764 4456677777777778888888877776543
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=1.4e-17 Score=129.85 Aligned_cols=245 Identities=9% Similarity=-0.066 Sum_probs=131.1
Q ss_pred hhcCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976 21 CKNRYTDNALRMFRGLQKHGFV---PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (319)
...|++++|++.|+++.+.... .+..++..+...+...|++++|...|+++..... .+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 3456777777777777664221 1355667777777777777777777777766532 25666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 98 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
+|.+.+++..+.. +.+...+..+..++...|++++|...++++... .|+.......+..+...|++++|...+.+..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7777777776653 334556666666666666676666666666653 2333333333344445566666666665555
Q ss_pred HcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhH
Q 020976 178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD---SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTY 254 (319)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (319)
.... ++...+ .++..+...++.++|...+....+.... .+..++..+..++...|++++|...|++....++..+
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4321 122222 2444444555555555555554432100 0023334444444444444444444444443333333
Q ss_pred HHHHHHHHccCChhHHH
Q 020976 255 SSMVHNLCKAKRLPSAS 271 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~ 271 (319)
.....++...|++++|+
T Consensus 250 ~~~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQ 266 (275)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 33333333334444333
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.4e-17 Score=126.30 Aligned_cols=223 Identities=14% Similarity=0.068 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CC----cccH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT--FD----GFGY 118 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 118 (319)
...+..+...+...|++++|...|++..+.. .+..++..+..++...|++++|.+.+++..+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4677888888999999999999999998876 67888999999999999999999999988765311 11 4677
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198 (319)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (319)
..+...+...|++++|...|++.... .|+. ..+...|++++|...++++....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 88888888999999999999988875 3342 3466678888999998888875322 456777888888888
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHH
Q 020976 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 275 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (319)
|++++|...++...+.. +.+..++..+..++...|++++|...+++.... ++..|..+...+...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998888764 456677888888888888888888888876533 56677788888888888888888888
Q ss_pred HHHHc
Q 020976 276 SCLKS 280 (319)
Q Consensus 276 ~~~~~ 280 (319)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87765
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=2.3e-16 Score=122.79 Aligned_cols=241 Identities=11% Similarity=0.009 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc----HHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG----YCT 120 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 120 (319)
...+......+...|++++|...|++..+..+. +...+..+..++...|++++|++.+++..+.+ ++... |..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence 345566677788888888888888888775432 55678888888888888888888888887742 33333 677
Q ss_pred HHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC
Q 020976 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200 (319)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (319)
+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+..+. +...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHH
Confidence 7788888888888888888887752 335567788888888888888888888887765322 45556666623344458
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhhccC-----C------chhHHHHHHHHHccCC
Q 020976 201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK-----D------SFTYSSMVHNLCKAKR 266 (319)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~-----~------~~~~~~l~~~~~~~~~ 266 (319)
+++|...++.+.+.. +.+...+..+..++...|+ +++|...+++.... + ...|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 888888888887764 3345666666666666666 55566666554321 1 1356666777777777
Q ss_pred hhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976 267 LPSASKLLLSCLKSGVRILKSAQKAV 292 (319)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (319)
+++|...++++.+... .+......+
T Consensus 237 ~~~A~~~~~~al~~~p-~~~~a~~~l 261 (272)
T 3u4t_A 237 KVKADAAWKNILALDP-TNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-cHHHHHHHh
Confidence 7777777777776531 244444433
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=1.6e-16 Score=123.67 Aligned_cols=237 Identities=13% Similarity=0.025 Sum_probs=191.0
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--AITYTTI 86 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 86 (319)
|...+......+...|++++|+..|++..+.... +...+..+...+...|++++|.+.+++.......|+ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3456667788999999999999999999886433 566889999999999999999999999988432222 2348899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCH
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 166 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
..++...|++++|++.+++..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 556788999999999999999999999999886 344566777777345555699
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC---hhHHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHhcCCH
Q 020976 167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN---IKGARLHLEYMNKIG-FDSN------LEAYNCIVDRLGKDGKI 236 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~ 236 (319)
++|.+.|++..+..+. +...+..+...+...|+ +++|...+++..+.. -.|+ ..++..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999987433 46677778888888887 888999998887652 1233 25778889999999999
Q ss_pred HHHHHHHHhhccC
Q 020976 237 DHAINVFESMEVK 249 (319)
Q Consensus 237 ~~a~~~~~~~~~~ 249 (319)
++|.+.+++....
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987644
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=7e-17 Score=125.87 Aligned_cols=243 Identities=9% Similarity=-0.130 Sum_probs=194.3
Q ss_pred hcCChhHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976 57 KAGRLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 133 (319)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 133 (319)
..|++++|.+.|+++.+.... .+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457899999999999886321 246778889999999999999999999999875 5578889999999999999999
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
|...|+++.... +.+..++..+..++...|++++|...++++.+.. |+..........+...|++++|...++....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999863 3467889999999999999999999999999864 4444444455555777999999999988877
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC-------chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH
Q 020976 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-------SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286 (319)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (319)
.. +++... ..++..+...++.++|...+.+....+ ...+..+...|...|++++|...|+++.... |+.
T Consensus 173 ~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 64 344444 447777888889999999999887662 4778889999999999999999999998763 422
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 020976 287 SAQKAVVDGLRHSGCRREAKKIQ 309 (319)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~a~~~~ 309 (319)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 333355777889999988776
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.1e-15 Score=125.84 Aligned_cols=304 Identities=11% Similarity=-0.073 Sum_probs=219.6
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-----
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKH--------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS----- 74 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 74 (319)
.....||.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667999999999999999999999886542 11224678999999999999999999999887641
Q ss_pred C-CC-CChhhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCcccHHHHHHHH---HHcCchHHHHHHHHHHHhCCCc
Q 020976 75 G-HA-PNAITYTTIMKCCFRN--RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF---VKIGRLKEATDYMEQMVTDGVQ 147 (319)
Q Consensus 75 ~-~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
+ .. ....++.....++... +++++|++.|++..+.. |-++..+..+..++ ...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 11 1345666666565554 56999999999998874 44555555555543 44577788999999888753 3
Q ss_pred cChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH
Q 020976 148 LDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 223 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (319)
.+..++..+...+.. .+++++|.+.+++.....+. +...+..+...+...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 355566666555544 46788999999998876544 66788899999999999999999999998874 4455667
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020976 224 NCIVDRLGKD-------------------GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 281 (319)
Q Consensus 224 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (319)
..+..+|... +..+.|...+++.... +...+..+...|...|++++|...|++.++..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 6666665432 2356677777765433 66788999999999999999999999999875
Q ss_pred CccCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhh
Q 020976 282 VRILKS--AQKAVVD-GLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 282 ~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~ 315 (319)
..|... .+..+.. .....|+.++|+..+++..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444321 2333332 345789999999999876543
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=2.3e-15 Score=117.30 Aligned_cols=224 Identities=9% Similarity=-0.016 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYC 119 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (319)
+..++..+...+...|++++|.+.|++..+. -+...+..+...+.. .+++++|.+.|++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888888888999999999999998873 356778888888888 899999999999988875 667788
Q ss_pred HHHHHHHH----cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHH
Q 020976 120 TVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTIL 191 (319)
Q Consensus 120 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (319)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 899999999999888864 66778888888888 899999999999888765 45566777
Q ss_pred HHHHhc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhccC-CchhHHHHHHHHH
Q 020976 192 IDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLC 262 (319)
Q Consensus 192 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~ 262 (319)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++.... ++..+..+...|.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777777 888999999998888764 45667778888888 88888888888876655 5667777778888
Q ss_pred c----cCChhHHHHHHHHHHHcCC
Q 020976 263 K----AKRLPSASKLLLSCLKSGV 282 (319)
Q Consensus 263 ~----~~~~~~a~~~~~~~~~~~~ 282 (319)
. .+++++|...+++..+.|.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCcccCHHHHHHHHHHHHHcCC
Confidence 7 8888888888888887653
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=4.6e-16 Score=126.21 Aligned_cols=245 Identities=12% Similarity=0.063 Sum_probs=180.8
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-LRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
...|..+...+...|++++|++.|+++.+.... +..+|+.+..++...|+ +++|+..|+++...... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 456777888888888899999998888876443 67788888888888886 88998888888876443 6788888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh-cCCHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK-EGKLE 167 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 167 (319)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..+++++... +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888775 5577788888888888888888888888888763 3467778888888888 55546
Q ss_pred HH-----HHHHHHHHHcCCCCcHHhHHHHHHHHhccC--ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC------
Q 020976 168 AA-----YLLLDEMEKQGFECDKYTHTILIDGLCKAG--NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG------ 234 (319)
Q Consensus 168 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 234 (319)
+| ++.+++.....+. +...|..+...+...| +++++...+..+ +. .+.+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4777777776443 5567777777777777 577888777776 33 2445566777777777653
Q ss_pred ---CHHHHHHHHHhh-ccCCc---hhHHHHHHHH
Q 020976 235 ---KIDHAINVFESM-EVKDS---FTYSSMVHNL 261 (319)
Q Consensus 235 ---~~~~a~~~~~~~-~~~~~---~~~~~l~~~~ 261 (319)
..++|.++++++ .+.|+ ..|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 247777777777 44443 3444444433
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=4.2e-15 Score=115.80 Aligned_cols=223 Identities=13% Similarity=-0.014 Sum_probs=178.2
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYT 84 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
++.++..+...+...|++++|++.|++..+. .+..++..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777888888888999999988888773 355677778888888 888899999888888764 677888
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCccChhhHHHH
Q 020976 85 TIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTL 156 (319)
Q Consensus 85 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (319)
.+...+.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 888889998888888775 56677888888888 888899999888888865 55667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 020976 157 INLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 228 (319)
Q Consensus 157 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (319)
...+.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 788877 888899998888888764 45667777888888 888889988888888764 2566777778
Q ss_pred HHHh----cCCHHHHHHHHHhhccC
Q 020976 229 RLGK----DGKIDHAINVFESMEVK 249 (319)
Q Consensus 229 ~~~~----~~~~~~a~~~~~~~~~~ 249 (319)
+|.. .+++++|.+.|++....
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 8887 88888888888876544
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.1e-16 Score=122.39 Aligned_cols=202 Identities=15% Similarity=0.060 Sum_probs=136.4
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 455677777778888888888888888877533 3677777888888888888888888888776532 36677777888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877664 4466677777778888888888888888877652 3356677777788888888888
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
|...+++..+.... +..++..+...+...|++++|...++.+.+..
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888887766432 56677777778888888888888888877653
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.2e-15 Score=117.40 Aligned_cols=200 Identities=11% Similarity=-0.006 Sum_probs=100.3
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
..|..+...+...|++++|++.|+++.+... .+...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 4455555555555555555555555554322 2445555555555555555555555555554321 1444555555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976 91 FRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555411112 33344445555555555555555555554432 22344455555555555555555
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
...++++.+... .+...+..+...+...|++++|...++.+.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555544322 23344444555555555555555555555443
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.7e-15 Score=114.24 Aligned_cols=204 Identities=7% Similarity=-0.094 Sum_probs=161.8
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+...|..+...+...|++++|++.|+.+.+... .+...+..+...+...|++++|.+.++++..... .+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 3566788888899999999999999998887643 3677888888899999999999999998887542 3677888888
Q ss_pred HHHHhc-CChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976 88 KCCFRN-RKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 88 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.... +.+...+..+..++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 888899 99999999999888732222 35667778888888899999999998887752 3356778888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976 166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
+++|...+++..+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999988887644235666777777778888888888888888764
No 46
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=3.4e-14 Score=121.28 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=38.3
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 4455666665 355666666666666666542 235556666666666666666666666666553
No 47
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2e-15 Score=127.01 Aligned_cols=303 Identities=10% Similarity=-0.046 Sum_probs=209.5
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhC-----C-CC-CCHHHHHHHHHHHHhc--CChhHHHHHHHHHhhCCCCCC
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKH-----G-FV-PELVTYNILIKGLCKA--GRLRTARWILKELGDSGHAPN 79 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~ 79 (319)
...+|+.+...|...|++++|...+++..+. + .. ....++..+..++.+. +++++|.+.|++..+..+. +
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-N 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-C
Confidence 4567999999999999999999999887542 1 11 1356676666666554 4699999999999886432 4
Q ss_pred hhhHHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCccChhh
Q 020976 80 AITYTTIMKCC---FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVS 152 (319)
Q Consensus 80 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (319)
+..+..+..++ ...++.++|++.+++..+.. +.+...+..+...+.. .+++++|.+.+++..... +.+..+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~ 249 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence 55665555543 44577888999999888764 4455666666555544 467889999999988763 456778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc-------------------CChhHHHHHHHHHHh
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-------------------GNIKGARLHLEYMNK 213 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~ 213 (319)
+..+...+...|++++|...+++..+..+. +..++..+...|... +..+.|...++...+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 899999999999999999999999987443 455666665554322 235677778888777
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc--h----hHHHHHH-HHHccCChhHHHHHHHHHHHcCC----
Q 020976 214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS--F----TYSSMVH-NLCKAKRLPSASKLLLSCLKSGV---- 282 (319)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~---- 282 (319)
.+ +.+..++..+...+...|++++|...|++....++ . .+..+.. .+...|++++|+..+++.++...
T Consensus 329 ~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 329 AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 64 55667888999999999999999999998765422 1 2222222 23467899999999888765421
Q ss_pred -------------------ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 283 -------------------RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 283 -------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
+.++.+|..+..+|...|++++|.+.|++..+.+
T Consensus 408 ~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 408 KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2356788999999999999999999999877654
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=1.2e-15 Score=123.85 Aligned_cols=246 Identities=11% Similarity=0.028 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK-YKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
...|..+...+...|++++|++.++++...... +..+|+.+..++...|+ +++|+..|+++.+.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 467888888999999999999999999986433 68889999999999996 999999999999875 567888999999
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc-cCChh
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-AGNIK 202 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 202 (319)
++...|++++|+..|+++.... +-+...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999863 447888999999999999999999999999988655 77888889989888 56657
Q ss_pred HH-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhhccC---CchhHHHHHHHHHccC-------
Q 020976 203 GA-----RLHLEYMNKIGFDSNLEAYNCIVDRLGKDG--KIDHAINVFESMEVK---DSFTYSSMVHNLCKAK------- 265 (319)
Q Consensus 203 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~------- 265 (319)
+| ...+++.++.. +-+...|..+..++...| ++++|.+.+.++ .. ++..+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 47888888764 456678888888888888 689999999888 33 5667888888888864
Q ss_pred --ChhHHHHHHHHH-HHcCCcc-CHHHHHHHHHHHHh
Q 020976 266 --RLPSASKLLLSC-LKSGVRI-LKSAQKAVVDGLRH 298 (319)
Q Consensus 266 --~~~~a~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~ 298 (319)
..++|+++++++ .+. .| ....|..+...+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence 258999999998 554 34 44566666665543
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.7e-16 Score=130.73 Aligned_cols=296 Identities=11% Similarity=0.012 Sum_probs=226.2
Q ss_pred CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCC
Q 020976 6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHA 77 (319)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 77 (319)
..+....+......+...|++++|+..|+++.+.+.. + ..++..+...+...|++++|...+++.... +..
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 3456667788889999999999999999999886432 3 357888999999999999999999987542 212
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CCCcccHHHHHHHHHHcCc--------------------h
Q 020976 78 P-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-----TFDGFGYCTVIAAFVKIGR--------------------L 131 (319)
Q Consensus 78 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~--------------------~ 131 (319)
| ...++..+...+...|++++|...+++..+... .....++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2 255788888999999999999999998875410 1113467788889999999 9
Q ss_pred HHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCc----HHhHHHHHHHHhccCCh
Q 020976 132 KEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECD----KYTHTILIDGLCKAGNI 201 (319)
Q Consensus 132 ~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~ 201 (319)
++|...+++.... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999998877542 111 2245688889999999999999999998875311 111 23788888999999999
Q ss_pred hHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCCh
Q 020976 202 KGARLHLEYMNKIG----FDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRL 267 (319)
Q Consensus 202 ~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~ 267 (319)
++|...+++..+.. ..+ ...++..+...+...|++++|...+++.... ...++..+...|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 99999999887541 111 1457788899999999999999999887543 255788889999999999
Q ss_pred hHHHHHHHHHHHc----CCcc-CHHHHHHHHHHHHhcCCH
Q 020976 268 PSASKLLLSCLKS----GVRI-LKSAQKAVVDGLRHSGCR 302 (319)
Q Consensus 268 ~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 302 (319)
++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999987654 2222 345677777888877765
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=2.5e-15 Score=115.57 Aligned_cols=198 Identities=13% Similarity=-0.014 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (319)
...+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3445555556666666666666666655542 2245555555556666666666666666555543 3344455555555
Q ss_pred HHHcCchHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976 125 FVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
+...|++++|...++++...+..| +...+..+..++...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555555421112 3344445555555555555555555555544222 34444455555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
|...++.+.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555544432 223333444444444444444444444433
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=3.3e-15 Score=112.63 Aligned_cols=199 Identities=9% Similarity=-0.040 Sum_probs=131.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976 79 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566777777777788888888777777654 4456667777777777777777777777776652 335566777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976 159 LYCKE-GKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236 (319)
Q Consensus 159 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (319)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 77777777777777622222 24566666777777777777777777776653 33456666666666777777
Q ss_pred HHHHHHHHhhcc----CCchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 237 DHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 237 ~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
++|...++++.. .+...+..+...+...|+.+++..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777766665542 24445555555566666666666666666543
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=4e-16 Score=119.21 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (319)
...|..+...+...|++++|...|+++.+... .+...+..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 34455555555555555555555555554321 244555555555555555555555555555442 2334444445555
Q ss_pred HHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHH
Q 020976 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (319)
+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554431 223444444455555555555555555554443221 333444444444444444444
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
...++.+.+.. +. ++.++..+...|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~-------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PG-------------------------------HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TT-------------------------------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cc-------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 44444444332 12 3344555555555566666666666655554
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.73 E-value=2.7e-16 Score=129.89 Aligned_cols=266 Identities=13% Similarity=0.064 Sum_probs=136.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCChhhH
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS----GH-APNAITY 83 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 83 (319)
+..+...+...|++++|+..|+++.+.+.. +. .++..+...+...|++++|...+++.... +. +....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 444555566666777777777666654222 22 35566666666667777666666665431 11 1123455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCcccHHHHHHHHHHcCc-----------------hHHHHHHHHHH
Q 020976 84 TTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGFGYCTVIAAFVKIGR-----------------LKEATDYMEQM 141 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~ 141 (319)
..+...+...|++++|...+++..+.. .+....++..+...+...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 566666666666666666666654321 01123345555566666666 66666665554
Q ss_pred HhC----CC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HHhHHHHHHHHhccCChhHHHHHHHHH
Q 020976 142 VTD----GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLEYM 211 (319)
Q Consensus 142 ~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
... +. +....++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 331 11 111234555556666666666666666655432110 01 124555555566666666666666555
Q ss_pred HhcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHH
Q 020976 212 NKIGFD-----SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSC 277 (319)
Q Consensus 212 ~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (319)
.+.... ....++..+..++...|++++|...+++.... ...++..+...|...|++++|...+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 432100 01234445555555555555555555544321 1224444455555555555555555554
Q ss_pred HH
Q 020976 278 LK 279 (319)
Q Consensus 278 ~~ 279 (319)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.73 E-value=4.8e-16 Score=128.38 Aligned_cols=270 Identities=16% Similarity=0.088 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCc
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA----ITYTTIMKCCFRNRKYKLGLEILSAMKRK----G-YTFDG 115 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 115 (319)
...+..+...+...|++++|...|+++.+.... +. ..+..+...+...|++++|...+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778889999999999999999886332 33 47888899999999999999999988653 1 12345
Q ss_pred ccHHHHHHHHHHcCchHHHHHHHHHHHhC----C-CccChhhHHHHHHHHHhcCC-----------------HHHHHHHH
Q 020976 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTD----G-VQLDIVSYNTLINLYCKEGK-----------------LEAAYLLL 173 (319)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 173 (319)
..+..+...+...|++++|...+++.... + .+....++..+...+...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 66788888999999999999999987664 1 12234578888999999999 99999999
Q ss_pred HHHHHc----CCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 020976 174 DEMEKQ----GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SN----LEAYNCIVDRLGKDGKIDHAINVF 243 (319)
Q Consensus 174 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 243 (319)
++..+. +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+..+|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887542 1111 2347788889999999999999999988764210 11 237788899999999999999999
Q ss_pred HhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHHHHcC----Cc-cCHHHHHHHHHHHHhcCCHHHHHHHH
Q 020976 244 ESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG----VR-ILKSAQKAVVDGLRHSGCRREAKKIQ 309 (319)
Q Consensus 244 ~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 309 (319)
++.... ...++..+...|...|++++|...+++.+... .. .....+..+...|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 877643 24678888999999999999999999887641 11 12457888899999999999999999
Q ss_pred HHHHhh
Q 020976 310 SKIRMA 315 (319)
Q Consensus 310 ~~~~~~ 315 (319)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987543
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=1.4e-15 Score=125.13 Aligned_cols=273 Identities=16% Similarity=0.111 Sum_probs=211.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-
Q 020976 42 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGLEILSAMKRK----GYT- 112 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 112 (319)
.+....+......+...|++++|...|++....... + ..++..+...+...|++++|...+++.... +-.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345667778888999999999999999999886322 3 357888889999999999999999987543 211
Q ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHhC----CC-ccChhhHHHHHHHHHhcCC--------------------HH
Q 020976 113 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GV-QLDIVSYNTLINLYCKEGK--------------------LE 167 (319)
Q Consensus 113 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~--------------------~~ 167 (319)
....++..+...+...|++++|...+++.... +. .....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 22456778888999999999999999987763 11 1114478888899999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCCHH
Q 020976 168 AAYLLLDEMEKQ----GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSN----LEAYNCIVDRLGKDGKID 237 (319)
Q Consensus 168 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 237 (319)
+|...+.+.... +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887542 1111 234678888899999999999999998876410 111 237888899999999999
Q ss_pred HHHHHHHhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHHHHcC----Ccc-CHHHHHHHHHHHHhcCCHH
Q 020976 238 HAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG----VRI-LKSAQKAVVDGLRHSGCRR 303 (319)
Q Consensus 238 ~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~ 303 (319)
+|...+++.... ...++..+...|...|++++|...+++..+.. ..+ ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887533 15578888999999999999999999887641 111 2567888899999999999
Q ss_pred HHHHHHHHHHhh
Q 020976 304 EAKKIQSKIRMA 315 (319)
Q Consensus 304 ~a~~~~~~~~~~ 315 (319)
+|.+.+++..+.
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999886543
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.71 E-value=1.1e-15 Score=122.36 Aligned_cols=277 Identities=12% Similarity=0.017 Sum_probs=156.2
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-Ch
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHAP-NA 80 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 80 (319)
...+......+...|++++|+..|+++.+.... + ...+..+...+...|++++|.+.+++.... +..| ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344556667788888888888888888775322 3 356778888888888888888888876542 1111 24
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----cccHHHHHHHHHHcCc--------------------hHHHH
Q 020976 81 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FD----GFGYCTVIAAFVKIGR--------------------LKEAT 135 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~ 135 (319)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 56677777788888888888887776543100 11 2255666667777777 66666
Q ss_pred HHHHHHHhC----CC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCcHHhHHHHHHHHhccCChhHHH
Q 020976 136 DYMEQMVTD----GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-----ECDKYTHTILIDGLCKAGNIKGAR 205 (319)
Q Consensus 136 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~ 205 (319)
..+++.... +. +.....+..+...+...|++++|...+++..+... .....++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655431 11 11123455555666666666666666665543210 001124444445555555555555
Q ss_pred HHHHHHHhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHc----
Q 020976 206 LHLEYMNKIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS---- 280 (319)
Q Consensus 206 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 280 (319)
..+++..+.... ++.. ....++..+...+...|++++|...+++....
T Consensus 244 ~~~~~al~~~~~~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRA---------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHTTCHH---------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchh---------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 555544332000 0000 01234444555555566666666655555432
Q ss_pred CCc-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 281 GVR-ILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 281 ~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
+.. ....++..+...|.+.|++++|.+.+++..+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 111 1133555666667777777777777766544
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.71 E-value=1.4e-15 Score=121.77 Aligned_cols=237 Identities=16% Similarity=0.102 Sum_probs=137.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCccc
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGLEILSAMKRK----GY-TFDGFG 117 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 117 (319)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +. +.....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445556667777777777777777764322 2 345666777777777777777777665432 11 112344
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGK--------------------LEAAYLL 172 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 172 (319)
+..+...+...|++++|...+++.... +.+ ....++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 555666666667777776666665442 000 012245555555555555 5555555
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--
Q 020976 173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 249 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 249 (319)
+++..... ...+. +....++..+...+...|++++|...+++....
T Consensus 166 ~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 54433210 00000 011234444555555555655555555544321
Q ss_pred -------CchhHHHHHHHHHccCChhHHHHHHHHHHHc----CCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 250 -------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 250 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
...++..+...+...|++++|...+++.... +..+ ...++..+...+...|++++|...+++....
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1235666777778888888888888776643 1111 1567788889999999999999999887543
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.69 E-value=1.5e-14 Score=118.33 Aligned_cols=291 Identities=12% Similarity=-0.013 Sum_probs=208.5
Q ss_pred HhhcCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCChhHHH-----------HHHHHHhhCCCCCChhh
Q 020976 20 LCKNRYTDNALRMFRGLQKH--GFVPE--LVTYNILIKG--LCKAGRLRTAR-----------WILKELGDSGHAPNAIT 82 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 82 (319)
+.+.+++++|..+++++.+. .+..| ...|-.++.. ..-.++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 56789999999999998663 23233 3333444332 11233444444 6666665421 11121
Q ss_pred ------HHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhC--CC---
Q 020976 83 ------YTTIMKCCFRNRKYKLGLEILSAMKRK----GYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD--GV--- 146 (319)
Q Consensus 83 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~--- 146 (319)
+......+...|++++|...+++..+. +-++ ...++..+...+...|+++.|...+++.... ..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556678899999999999998764 1111 3467888889999999999999999988763 11
Q ss_pred -ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----cHHhHHHHHHHHhccCChhHHHHHHHHHHhc----CC
Q 020976 147 -QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-C----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GF 216 (319)
Q Consensus 147 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 216 (319)
+....+++.+..+|...|++++|.+.+++..+.... + ...++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112357888899999999999999999988753111 1 1247888999999999999999999998873 33
Q ss_pred -CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----Cc---hhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCcc
Q 020976 217 -DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DS---FTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRI 284 (319)
Q Consensus 217 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 284 (319)
+....++..+..++...|++++|...+++.... ++ ..+..+...+...|+ +++|+.++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 344577888999999999999999999876543 22 235667788888898 77777777765 3333
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 285 -LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 285 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
....+..+...|...|++++|.+.+++..+.
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3457778889999999999999999987654
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=1.6e-13 Score=108.71 Aligned_cols=236 Identities=11% Similarity=-0.021 Sum_probs=172.5
Q ss_pred chHhHHHHHHHHhhc----CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHH
Q 020976 9 CTATFNIMLNGLCKN----RYT----DNALRMFRGLQKHGFVPELVTYNILIKGLCK-------AGRL-------RTARW 66 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~ 66 (319)
+...|...+....+. ++. ++|..+|++..... +.++..|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345677777765554 233 68888999988753 3377788888877753 4776 88999
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cc-cHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976 67 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-GF-GYCTVIAAFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
+|++....-.+-+...|..++..+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999887312225668888888888899999999999998875 443 33 7888888888889999999999988876
Q ss_pred CCccChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC-CCC--Ch
Q 020976 145 GVQLDIVSYNTLINLYC-KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-FDS--NL 220 (319)
Q Consensus 145 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~ 220 (319)
. +++...|........ ..|++++|..+|+...+..+. +...+..++..+.+.|++++|..+|++..+.. ++| ..
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 3 334444544333322 368899999999888776433 56778888888888899999999998888752 344 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976 221 EAYNCIVDRLGKDGKIDHAINVFESMEVK 249 (319)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (319)
..|..++....+.|+.+.|..+++++...
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57777788888888888888888876643
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=1.6e-13 Score=108.72 Aligned_cols=231 Identities=6% Similarity=-0.065 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHhc----CCh----hHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCCh-------hHHHHH
Q 020976 45 LVTYNILIKGLCKA----GRL----RTARWILKELGDSGHAPNAITYTTIMKCCFR-------NRKY-------KLGLEI 102 (319)
Q Consensus 45 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 102 (319)
...|...+..-.+. ++. ++|..+|++..... +-+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 45566666654443 232 56777777777643 2366677777766653 4665 777777
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 020976 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-IV-SYNTLINLYCKEGKLEAAYLLLDEMEKQG 180 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (319)
|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777776311334456777777777777788888888777764 333 32 67777777777777777777777777653
Q ss_pred CCCcHHhHHHHHHHH-hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-------Cch
Q 020976 181 FECDKYTHTILIDGL-CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSF 252 (319)
Q Consensus 181 ~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~ 252 (319)
.. +...|....... ...|++++|..+|+...+.. +.+...+..++..+.+.|++++|..+|++.... ...
T Consensus 165 p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 RT-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp TC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 32 333443333222 12577777777777776653 345566777777777777777777777776542 233
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 253 TYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
.|..++..+...|+.+.|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666677777777777777777777664
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=3.4e-14 Score=103.77 Aligned_cols=167 Identities=16% Similarity=0.090 Sum_probs=110.3
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
++..|..+...+.+.|++++|++.|++..+..+. +..++..+...+.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 4566777777777777777777777777665433 5666777777777777777777777776654322 4556666666
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
.+...++++.+.+.+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6667777777777777666553 4455566666666777777777777777666642 3345566666677777777777
Q ss_pred HHHHHHHHHHc
Q 020976 169 AYLLLDEMEKQ 179 (319)
Q Consensus 169 a~~~~~~~~~~ 179 (319)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777766653
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=2.6e-13 Score=122.39 Aligned_cols=252 Identities=14% Similarity=0.153 Sum_probs=144.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 45556667777777777776421 2222233322 4456666666665431 35566667777777777
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 175 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
+++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|.+.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 77777766442 245556666777777777777777776655542 23223334666666666666433322
Q ss_pred HHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHH
Q 020976 176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYS 255 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (319)
+ .++...+..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .++.+|.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWk 1254 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWK 1254 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHH
Confidence 1 234445555666666667777776666653 25666666666667777776666655 3445555
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
.+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555544332 2234445555666666666666666666544
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=1.2e-14 Score=121.97 Aligned_cols=207 Identities=13% Similarity=-0.031 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHH
Q 020976 61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY-KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 139 (319)
++++.+.+++..... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444443321 12444444555555555555 55555555554442 2234445555555555555555555555
Q ss_pred HHHhCCCccChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc--------CChh
Q 020976 140 QMVTDGVQLDIVSYNTLINLYCKE---------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA--------GNIK 202 (319)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 202 (319)
+..+. .|+...+..+..++... |++++|.+.+++..+..+. +...+..+..++... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55443 23344444455555554 5555555555555444322 344444444444444 4555
Q ss_pred HHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHH
Q 020976 203 GARLHLEYMNKIGFD---SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL 273 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 273 (319)
+|...|++..+.. + .+...+..+..+|...|++++|.+.|++.... +...+..+...+...|++++|++.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554432 1 23444555555555555555555555544322 333444444445555555544443
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=9.7e-14 Score=101.31 Aligned_cols=167 Identities=13% Similarity=-0.024 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
++..|..+...|...|++++|.+.|++..+..+. +..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5677888888888888888888888888775433 67778888888888888888888888877664 445566667777
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
.+...++++.+...+.+..... +.+...+..+..++.+.|++++|++.|++..+..+. +..++..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 7778888888888888777652 345667777788888888888888888887776443 56677777888888888888
Q ss_pred HHHHHHHHHhc
Q 020976 204 ARLHLEYMNKI 214 (319)
Q Consensus 204 a~~~~~~~~~~ 214 (319)
|...|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888877764
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=7.5e-15 Score=116.36 Aligned_cols=246 Identities=15% Similarity=0.058 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------C-
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDS-------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------G- 110 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 110 (319)
..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666666677777777777777666552 12223445566666666666666666666665543 1
Q ss_pred CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC------CC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 020976 111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD------GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---- 179 (319)
Q Consensus 111 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 179 (319)
.+....++..+...+...|++++|...+++.... +. +.....+..+...+...|++++|.+++++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1222344555555566666666666666655442 11 112334455555555556666665555555432
Q ss_pred --CCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976 180 --GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-------FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249 (319)
Q Consensus 180 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (319)
+..| ...++..+...+...|++++|...++++.+.. ..+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 1111 12344445555555555555555555544320 0000000000
Q ss_pred CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
....+..+...+...+.+.++...++..... .+.+..++..+..+|.+.|++++|.+++++..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1111222233344456666677777666543 2335667888888888999999999888877654
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=4.9e-15 Score=117.41 Aligned_cols=173 Identities=14% Similarity=0.066 Sum_probs=139.7
Q ss_pred CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-----
Q 020976 7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS----- 74 (319)
Q Consensus 7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 74 (319)
+.+..++..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999999999999999998763 23335677889999999999999999999998763
Q ss_pred -CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-
Q 020976 75 -GH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD- 144 (319)
Q Consensus 75 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 144 (319)
+. +....++..+...+...|++++|.+.+++..+. +. +.....+..+...+...|++++|..+++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 224567888999999999999999999988764 21 234556778888999999999999999998764
Q ss_pred -----C-CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 145 -----G-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 145 -----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
+ .+....++..+..++...|++++|...++++.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1223457888999999999999999999998753
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=2.3e-14 Score=119.55 Aligned_cols=281 Identities=11% Similarity=0.025 Sum_probs=162.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL---RTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|.++|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667788899999999999987765 334445566666667777 8888888888753 55566666664555
Q ss_pred cC-----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH---HHHHHHHHHhCC-------------------
Q 020976 93 NR-----KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE---ATDYMEQMVTDG------------------- 145 (319)
Q Consensus 93 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~------------------- 145 (319)
.+ ++++|.+.|++..+.|. +..+..|...|...+..+. +.+.+......|
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 44 67888888888877652 2245555555544333211 122222111111
Q ss_pred -------------CccChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc----CChhHHH
Q 020976 146 -------------VQLDIVSYNTLINLYCKEG---KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA----GNIKGAR 205 (319)
Q Consensus 146 -------------~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~ 205 (319)
...++..+..+...|...| +.++|++.|++..+.|.. +...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 1123336677777777777 778888888888777643 444445566666544 5778888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHhhccC-CchhHHHHHHHHHccC-----ChhHHHHHHHH
Q 020976 206 LHLEYMNKIGFDSNLEAYNCIVDR-L--GKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAK-----RLPSASKLLLS 276 (319)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~-----~~~~a~~~~~~ 276 (319)
..|+... . .+...+..+... + ...+++++|.+.|++.... ++..+..+...|. .| ++++|..+|++
T Consensus 238 ~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 238 ALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 8888776 3 344555566655 3 4577888888888876655 6667777777776 44 78888888877
Q ss_pred HHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhh
Q 020976 277 CLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 316 (319)
.. .-++..+..+...|.. ..++++|.++|++.-+.|
T Consensus 313 Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 313 AV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp TT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred Hh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 66 2355666666666655 348888888888776654
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.64 E-value=1.4e-14 Score=121.56 Aligned_cols=215 Identities=9% Similarity=-0.022 Sum_probs=183.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCch-HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976 95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL-KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (319)
.++++++.++...... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566777777766553 45778888899999999999 99999999998863 346788999999999999999999999
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHhcc---------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CCH
Q 020976 174 DEMEKQGFECDKYTHTILIDGLCKA---------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD--------GKI 236 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 236 (319)
++..+. .|+...+..+...+... |++++|...+++..+.. +.+...+..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999986 46678899999999999 99999999999999875 55678899999999988 999
Q ss_pred HHHHHHHHhhcc------CCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976 237 DHAINVFESMEV------KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310 (319)
Q Consensus 237 ~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 310 (319)
++|...|++... .++..|..+..+|...|++++|...|++..+... .+...+..+..++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998764 3667899999999999999999999999988643 366788889999999999999998776
Q ss_pred HHHhh
Q 020976 311 KIRMA 315 (319)
Q Consensus 311 ~~~~~ 315 (319)
+++..
T Consensus 317 ~~~~~ 321 (474)
T 4abn_A 317 KTKPK 321 (474)
T ss_dssp TCCHH
T ss_pred cccCc
Confidence 65443
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=7.9e-13 Score=119.30 Aligned_cols=251 Identities=13% Similarity=0.075 Sum_probs=195.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976 22 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
..+++++|.++.++. -+..+|..+..++...|++++|.+.|.+. -|...|..++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 556666666666644 25788999999999999999999999664 378888999999999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 020976 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181 (319)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (319)
++....+.. +++...+.++.+|.+.+++++...+. . .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 999887764 44444556889999998888644432 2 346667778999999999999999999885
Q ss_pred CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHH
Q 020976 182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL 261 (319)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 261 (319)
..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...|++..|...... ...++..+..++..|
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYY 1290 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHH
Confidence 37889999999999999999998876 3458888888999999999999988875 444677788899999
Q ss_pred HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh--cCCHHHHHHHHH
Q 020976 262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH--SGCRREAKKIQS 310 (319)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~ 310 (319)
...|.+++|+.+++..+... +-....|.-+...|++ .++..++.+.|.
T Consensus 1291 e~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999998877543 2244566555555544 445555555554
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=2.3e-12 Score=104.94 Aligned_cols=295 Identities=14% Similarity=0.029 Sum_probs=179.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCh----hhH
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV----TYNILIKGLCKAGRLRTARWILKELGDSGHA-PNA----ITY 83 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~ 83 (319)
+......+...|++++|...+++........+.. +++.+...+...|++++|.+.+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556667888888888888877653222222 4566667777888888888888887652111 122 224
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCC----ccChhh
Q 020976 84 TTIMKCCFRNRKYKLGLEILSAMKRK----GYT--F-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV----QLDIVS 152 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 152 (319)
..+...+...|++++|.+.+++..+. +.+ | ....+..+...+...|++++|...+++...... +....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 55667777888888888888877643 211 1 223455566777788888888888887765321 112345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH-HhHH-----HHHHHHhccCChhHHHHHHHHHHhcCCCCC---hhhH
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK-YTHT-----ILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAY 223 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 223 (319)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 667777788888888888888877643211111 1111 223346677888888888877665431111 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976 224 NCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 294 (319)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (319)
..+...+...|++++|...+++.... ....+..+...+...|+.++|...+++...... . ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence 56667777788888888777765432 112455556667777888888888877766421 1 11223
Q ss_pred HHHhcCCHHHHHHHHHHHHhh
Q 020976 295 GLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~ 315 (319)
.+...| +....+++++...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 334444 4555566555443
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=2e-13 Score=111.64 Aligned_cols=230 Identities=9% Similarity=-0.052 Sum_probs=179.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC------CCCcccHH
Q 020976 51 LIKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY------TFDGFGYC 119 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 119 (319)
....+...|++++|...|++.... +..+ ...++..+..++...|+++.|...+++..+..- +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999998763 1111 346788899999999999999999998875310 11235678
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCcHHhHH
Q 020976 120 TVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GF-ECDKYTHT 189 (319)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 189 (319)
.+...|...|++++|...+++.... +.. ....++..+..+|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988753 111 11247888999999999999999999998762 22 33456788
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhc----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhhccC--CchhHHHHHHH
Q 020976 190 ILIDGLCKAGNIKGARLHLEYMNKI----GFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVHN 260 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~l~~~ 260 (319)
.+...+...|++++|...+++..+. +.+.....+..+...+...|+ +++|..++++.... ....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999988764 212223345678888889998 88899999887543 44577788999
Q ss_pred HHccCChhHHHHHHHHHHHc
Q 020976 261 LCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~ 280 (319)
|...|++++|...+++..+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=4.3e-13 Score=109.50 Aligned_cols=308 Identities=10% Similarity=0.010 Sum_probs=212.6
Q ss_pred CCCcchHhHHHHHHHH--hhcCChHHHHHHHHHHHhC--CCC--CCHHHHHHHHHHH--HhcCChhHHH---------HH
Q 020976 5 DLTPCTATFNIMLNGL--CKNRYTDNALRMFRGLQKH--GFV--PELVTYNILIKGL--CKAGRLRTAR---------WI 67 (319)
Q Consensus 5 g~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~--~~~~~~~~l~~~~--~~~~~~~~a~---------~~ 67 (319)
.+.|+..+-+.+-.-| ...+++++|.++++++.+. .+. ++...|-.++..- .-.+.+..+. +.
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 3556666767776666 8899999999999987653 222 2333444444321 1123333333 66
Q ss_pred HHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C----CcccHHHHHHHHHHcCchHHHHHHH
Q 020976 68 LKELGDSGHAPNA----ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-F----DGFGYCTVIAAFVKIGRLKEATDYM 138 (319)
Q Consensus 68 ~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~~~~~~a~~~~ 138 (319)
++.+.....+.+. ..+......+...|++++|+..+++..+.... + ...++..+...|...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 6665432111111 12233445567899999999999998764211 1 2456778888999999999999999
Q ss_pred HHHHhC----C-Ccc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CcHHhHHHHHHHHhccCChhHHHHH
Q 020976 139 EQMVTD----G-VQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFE-CDKYTHTILIDGLCKAGNIKGARLH 207 (319)
Q Consensus 139 ~~~~~~----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (319)
++.... + ..+ ...+++.+..+|...|++++|.+.+.+..+. +.. ....++..+...+...|++++|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 987753 1 111 2456788999999999999999999988753 111 1234678889999999999999999
Q ss_pred HHHHHhc----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----C---chhHHHHHHHHHccCC---hhHHHH
Q 020976 208 LEYMNKI----GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----D---SFTYSSMVHNLCKAKR---LPSASK 272 (319)
Q Consensus 208 ~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~l~~~~~~~~~---~~~a~~ 272 (319)
+++..+. +.+....++..+..++.+.|++++|...+++.... + ...+..+...+...++ +++|+.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9998862 22334677888999999999999999999876532 2 2245556666777788 777777
Q ss_pred HHHHHHHcCCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 273 LLLSCLKSGVRI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 273 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
.+++ .+..| ....+..+...|...|++++|.+.|++..+.
T Consensus 325 ~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 325 YFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7766 23333 3456778889999999999999999987654
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=3.7e-12 Score=106.25 Aligned_cols=274 Identities=13% Similarity=0.048 Sum_probs=175.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976 25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR---TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
++++|+..|++..+.|.. ..+..|...|...+..+ ++.+.+......| ++..+..+...|...+.++.+.+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 455666666665554322 24444444444433322 2333333333322 23444555555555554444443
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcC---chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc----CCHHHHHHHHH
Q 020976 102 ILSAMKRKGYTFDGFGYCTVIAAFVKIG---RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE----GKLEAAYLLLD 174 (319)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 174 (319)
....+.+.-...++..+..|...|...| +.++|+..|++..+.|. ++...+..+...|... +++++|..+|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3332222212334447788888888888 88999999999888763 3455446677777554 68899999998
Q ss_pred HHHHcCCCCcHHhHHHHHHH-H--hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHhh
Q 020976 175 EMEKQGFECDKYTHTILIDG-L--CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-----KIDHAINVFESM 246 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~ 246 (319)
+.. .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++.
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 887 32 44555666665 3 46789999999999988766 5566777777776 45 899999999988
Q ss_pred ccCCchhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhh
Q 020976 247 EVKDSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 247 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 316 (319)
...++..+..+...|.. ..++++|..+|++..+.|. +.....+...|.. ..+.++|..+|++..+.|
T Consensus 314 a~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 314 VGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 73377777777777766 3488899999999887664 3345556666653 457888888888776654
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.58 E-value=2.1e-12 Score=105.15 Aligned_cols=268 Identities=9% Similarity=-0.025 Sum_probs=194.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----ccc
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI----TYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FD----GFG 117 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 117 (319)
........+...|++++|...+++........+.. +++.+...+...|++++|.+.+++.....-. .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44455566778999999999999988754322222 4667778888999999999999987753111 11 223
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhC----CCc--c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--cHH
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ--L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE--C--DKY 186 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~ 186 (319)
+..+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778889999999999999987653 221 2 2345677888999999999999999998764322 1 235
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHhhccCCc-------hh
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL-EAYN-----CIVDRLGKDGKIDHAINVFESMEVKDS-------FT 253 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~ 253 (319)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.....+ ..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6778888899999999999999988764212211 1121 233447789999999999998876522 13
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc----CCccCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 254 YSSMVHNLCKAKRLPSASKLLLSCLKS----GVRILK-SAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567778899999999999999987653 222233 3667778889999999999999988654
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.2e-11 Score=105.59 Aligned_cols=303 Identities=13% Similarity=0.009 Sum_probs=220.0
Q ss_pred chHhHHHHHHHHhh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-------------HhcCChhHHHH
Q 020976 9 CTATFNIMLNGLCK---------NRYTDNALRMFRGLQKHGFVPELVTYNILIKGL-------------CKAGRLRTARW 66 (319)
Q Consensus 9 ~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~ 66 (319)
+...|...+....+ .|+++.|..+|++..+....+....|....... ...+++..|..
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~ 199 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARR 199 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHH
Confidence 45667777776654 789999999999998731111123443322211 12355777777
Q ss_pred HHHHH------hhCC---CCCC--------hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCCcccHHHH
Q 020976 67 ILKEL------GDSG---HAPN--------AITYTTIMKCCFRN----RKY----KLGLEILSAMKRKGYTFDGFGYCTV 121 (319)
Q Consensus 67 ~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
++..+ .+.. ++|+ ...|...+...... ++. +.+..+|++..... +.++..|..+
T Consensus 200 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~ 278 (530)
T 2ooe_A 200 VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEA 278 (530)
T ss_dssp HHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 77663 2221 2443 24666666543332 232 37788999988763 5577888888
Q ss_pred HHHHHH-------cCchH-------HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--H
Q 020976 122 IAAFVK-------IGRLK-------EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--K 185 (319)
Q Consensus 122 l~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 185 (319)
...+.+ .|+++ +|..+|++....-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 356 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT 356 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch
Confidence 888775 68887 89999999987323456788999999999999999999999999985 443 2
Q ss_pred HhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHhhccC---CchhHHHHHHHH
Q 020976 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR-LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 261 (319)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 261 (319)
..|..++..+.+.|+.++|..+|++..+.. +.+...+...... +...|++++|..+|++.... ++..|..++..+
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~ 435 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 435 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 578888888889999999999999998753 2233333332222 34689999999999987643 678899999999
Q ss_pred HccCChhHHHHHHHHHHHcCC-cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 262 CKAKRLPSASKLLLSCLKSGV-RI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
...|+.++|..+|++.+..+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 436 ~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 436 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998642 23 2457888888888999999999999988654
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=8.8e-13 Score=95.99 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=74.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.|..+...+...|++++|++.|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344445555555555555555555444321 244445555555555555555555555554432 123444444444455
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555444432 2333344444444444444444444444444331 2233344444444444444444444
Q ss_pred HHHHHH
Q 020976 172 LLDEME 177 (319)
Q Consensus 172 ~~~~~~ 177 (319)
.+++..
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=2.2e-12 Score=97.49 Aligned_cols=207 Identities=11% Similarity=-0.052 Sum_probs=157.0
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.|+..|......+...|++++|++.|+...+...+++...+..+..++...|++++|.+.|++....... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4568888999999999999999999999998765468888888999999999999999999999986433 677899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCcc--ChhhHHHHHH
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFDG-------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL--DIVSYNTLIN 158 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 158 (319)
.++...|++++|++.+++..+.. +.+. ..|..+...+...|++++|+..|++..+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999998874 3344 457778888899999999999999998862 22 3566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 020976 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 226 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (319)
++...| ...++++...+.. +...|..... ...+.+++|...+++..+.. +.+..+...+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 776554 3344555444322 3344443332 34566899999999998864 3333444433
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.55 E-value=5.5e-13 Score=116.56 Aligned_cols=166 Identities=12% Similarity=-0.016 Sum_probs=144.3
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
++.+|+.+...+.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|.+.|++..+.... +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 5778999999999999999999999999886443 6888999999999999999999999999886433 6788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
++...|++++|++.|++..+.. +-+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998875 5567889999999999999999999999998863 3467788999999999999999
Q ss_pred HHHHHHHHHH
Q 020976 169 AYLLLDEMEK 178 (319)
Q Consensus 169 a~~~~~~~~~ 178 (319)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887754
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=1.8e-12 Score=94.32 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (319)
...+..+...+...|++++|.+.++++..... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45667777888888999999988888876532 367778888888888888888888888887764 4566777778888
Q ss_pred HHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHH
Q 020976 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (319)
+...|++++|...++++.... +.+...+..+..++...|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887752 346677777888888888888888888888776433 566777788888888888888
Q ss_pred HHHHHHHHhc
Q 020976 205 RLHLEYMNKI 214 (319)
Q Consensus 205 ~~~~~~~~~~ 214 (319)
...++...+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888877664
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=1.7e-12 Score=113.44 Aligned_cols=166 Identities=10% Similarity=-0.027 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
+..+|+.+...+.+.|++++|.+.|++..+.... +..+|..+..++.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678999999999999999999999999986433 68899999999999999999999999999875 556788999999
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
++...|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.... +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998863 346788999999999999999999999999987544 67789999999999999999
Q ss_pred HHHHHHHHHh
Q 020976 204 ARLHLEYMNK 213 (319)
Q Consensus 204 a~~~~~~~~~ 213 (319)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=1.1e-11 Score=93.62 Aligned_cols=195 Identities=13% Similarity=0.022 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (319)
.|+..+......+...|++++|.+.|++..+...+++...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46688888999999999999999999999987654688888889999999999999999999999875 55677888999
Q ss_pred HHHHHcCchHHHHHHHHHHHhCCCccCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHhHHHHH
Q 020976 123 AAFVKIGRLKEATDYMEQMVTDGVQLDI-------VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD---KYTHTILI 192 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 192 (319)
.++...|++++|+..+++..... +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998852 2334 45788888899999999999999999875 454 45666666
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976 193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (319)
.++... +...++.+...+ ..+...+.... ....+.+++|...+++....
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666543 344455555543 23334443333 34456789999999987654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=1.3e-11 Score=100.70 Aligned_cols=229 Identities=12% Similarity=-0.003 Sum_probs=175.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CC-CCcccH
Q 020976 50 ILIKGLCKAGRLRTARWILKELGDSGH-APN----AITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YT-FDGFGY 118 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~ 118 (319)
.....+...|++++|...|++...... .++ ..++..+..++...|+++.|...+++..+.. .. ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345566789999999999999876311 122 4578888899999999999999998877531 01 124567
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcHHhH
Q 020976 119 CTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGFECDKYTH 188 (319)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 188 (319)
..+..+|...|++++|...+++.... +.+ ....++..+..+|...|++++|...+++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 78888999999999999999987763 111 1235678899999999999999999999876 4333 36778
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHhhccC--CchhHHHHHH
Q 020976 189 TILIDGLCKAGNIKGARLHLEYMNKIGF----DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVH 259 (319)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~l~~ 259 (319)
..+...+...|++++|...+++..+... +.....+..+...+...++ +.+|...+++.... ....+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8899999999999999999999887521 2223445666667777888 88888888875432 3456778899
Q ss_pred HHHccCChhHHHHHHHHHHH
Q 020976 260 NLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~ 279 (319)
.|...|++++|...|++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.47 E-value=1.3e-12 Score=101.84 Aligned_cols=159 Identities=14% Similarity=0.051 Sum_probs=111.5
Q ss_pred HhhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC------CC-CCChhhHHH
Q 020976 20 LCKNRYTDNALRMFRGLQKH-------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS------GH-APNAITYTT 85 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 85 (319)
....|++++|+..|++..+. ..+....++..+...+...|++++|...+++.... +. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567788888777776542 22234667888899999999999999999888753 21 223567788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC------C-CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC------C-CccChh
Q 020976 86 IMKCCFRNRKYKLGLEILSAMKRK------G-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD------G-VQLDIV 151 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 151 (319)
+..++...|++++|.+.+++..+. . .+....++..+...+...|++++|...+++.... + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 888888899999998888887654 1 1233556677777788888888888888777653 1 122345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 152 SYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
++..+..++...|++++|...+++..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667777777788888888888777664
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.47 E-value=2.5e-12 Score=100.21 Aligned_cols=158 Identities=15% Similarity=0.025 Sum_probs=104.0
Q ss_pred HhcCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------C-CCCCcccHHHH
Q 020976 56 CKAGRLRTARWILKELGD-------SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------G-YTFDGFGYCTV 121 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 121 (319)
...|++++|...+++..+ ...+....++..+...+...|++++|...+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345677777777666654 122224567778888888888888888888877653 1 12234567777
Q ss_pred HHHHHHcCchHHHHHHHHHHHhC------C-CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-cHHh
Q 020976 122 IAAFVKIGRLKEATDYMEQMVTD------G-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------GFEC-DKYT 187 (319)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 187 (319)
...+...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77888888888888888777653 1 1223556677777777788888888877777653 1112 2345
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHh
Q 020976 188 HTILIDGLCKAGNIKGARLHLEYMNK 213 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
+..+...+...|++++|...+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777777766654
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.45 E-value=7.5e-11 Score=91.32 Aligned_cols=239 Identities=9% Similarity=0.019 Sum_probs=150.8
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (319)
.-..-.|++..++.- ..+...........-+.+++...|+++.. ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 445557888777773 33222222233334455777777777642 12234433444443332 222
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 98 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
++..++++...+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777776655 45555566777788888888888888888766543 235667777888888888888888888888
Q ss_pred HHcCCCC-----cHHhHHHHHHHHh--c--cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 177 EKQGFEC-----DKYTHTILIDGLC--K--AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 177 ~~~~~~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
.+. .| +..+...++.++. . .++..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 765 44 3455555655532 2 33788888888887654 3443333444447888888888888887644
Q ss_pred c------------C-CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 248 V------------K-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 248 ~------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
. + ++.++..+|......|+ +|.+++.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3 2 56666555555555665 778888888775
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.45 E-value=2.8e-11 Score=94.98 Aligned_cols=190 Identities=12% Similarity=-0.006 Sum_probs=105.1
Q ss_pred HHHhcCChhHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHH
Q 020976 89 CCFRNRKYKLGLEILSAMKRK----GYTFD-GFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLIN 158 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 158 (319)
.|...|++++|.+.|.+..+. |-+++ ..+|+.+..+|.+.|++++|+..+++.... |-.. ...+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666655432 21111 345666666666666666666666665542 1100 1235666667
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCC-c----HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh------hhHHHH
Q 020976 159 LYCKE-GKLEAAYLLLDEMEKQGFEC-D----KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL------EAYNCI 226 (319)
Q Consensus 159 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 226 (319)
+|... |++++|+..|++..+..... + ..++..+...+...|++++|...+++..+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77774 77777777777665431110 1 235666677777777777777777777665322111 134556
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCch--------hHHHHHHHHH--ccCChhHHHHHHHHHH
Q 020976 227 VDRLGKDGKIDHAINVFESMEVKDSF--------TYSSMVHNLC--KAKRLPSASKLLLSCL 278 (319)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 278 (319)
..++...|++++|...|++....++. .+..++..+. ..+++++|+..|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 66677777777777777776644221 2233444443 3455666666665543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.44 E-value=6.7e-11 Score=92.84 Aligned_cols=212 Identities=12% Similarity=0.009 Sum_probs=151.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCChhHH
Q 020976 25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS----GHAPN-AITYTTIMKCCFRNRKYKLG 99 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 99 (319)
++++|.+.|++. ...|...|++++|.+.|++.... |.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 45677889999999999887652 22222 56788899999999999999
Q ss_pred HHHHHHHHhCCC---CC--CcccHHHHHHHHHHc-CchHHHHHHHHHHHhCCCcc-C----hhhHHHHHHHHHhcCCHHH
Q 020976 100 LEILSAMKRKGY---TF--DGFGYCTVIAAFVKI-GRLKEATDYMEQMVTDGVQL-D----IVSYNTLINLYCKEGKLEA 168 (319)
Q Consensus 100 ~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 168 (319)
+..+++..+... .+ -..++..+...|... |++++|+..|++........ + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988875421 11 134677888888886 99999999999887641110 1 3467888899999999999
Q ss_pred HHHHHHHHHHcCCCCcHH------hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh------hhHHHHHHHHH--hcC
Q 020976 169 AYLLLDEMEKQGFECDKY------THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL------EAYNCIVDRLG--KDG 234 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~ 234 (319)
|...|++..+........ .+..+..++...|++++|...+++..+.. |+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999998765433221 46777788888999999999999887642 321 12344555554 456
Q ss_pred CHHHHHHHHHhhccCCchh
Q 020976 235 KIDHAINVFESMEVKDSFT 253 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~ 253 (319)
++++|...|+.+...++..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 7889999998887766644
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.40 E-value=2.7e-10 Score=88.24 Aligned_cols=245 Identities=10% Similarity=0.025 Sum_probs=170.3
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH
Q 020976 53 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132 (319)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 132 (319)
+-..-.|++..++.-..++. .........-+.+++...|+++.. ..-.|....+..+. .|...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc---
Confidence 34456789988887433322 122233444456888888887642 11123322333333 333322
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHHHHHHHHhccCChhHHHHHHHHH
Q 020976 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYM 211 (319)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
++..|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888877664 45566667888999999999999999999877654 226677888899999999999999999999
Q ss_pred HhcCCCC-----ChhhHHHHHHHHH--hcC--CHHHHHHHHHhhccCCch--hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 212 NKIGFDS-----NLEAYNCIVDRLG--KDG--KIDHAINVFESMEVKDSF--TYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 212 ~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
.+. .| +..+...+..++. ..| ++.+|..+|+++....+. +-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 875 46 3566666766633 334 899999999998766443 4445555888999999999999876653
Q ss_pred C---------CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhccC
Q 020976 281 G---------VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 319 (319)
Q Consensus 281 ~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~h 319 (319)
- -+.++.++..+|......|+ +|.+++++++.....|
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 1 13366777677777777786 8899999999888776
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=8.9e-11 Score=90.56 Aligned_cols=186 Identities=9% Similarity=-0.013 Sum_probs=111.6
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-C-ChhhH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRLRTARWILKELGDSGHA-P-NAITY 83 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~ 83 (319)
+...+-.+...+.+.|++++|+..|+.+.+.... + ...+..+..++.+.|++++|...|+++.+..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4556666777778888888888888888775322 3 566777778888888888888888888774321 1 23456
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976 84 TTIMKCCFR--------NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 155 (319)
Q Consensus 84 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
..+..++.. .|++++|+..|+++.+.. +.+......+... ..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 666677777 788888888888877653 2222222111100 000000 0011344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHhcc----------CChhHHHHHHHHHHhc
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKA----------GNIKGARLHLEYMNKI 214 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 214 (319)
+..++...|++++|...|+++.+..+.. ....+..+..++... |++++|...++.+.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5666666777777777777766543221 223455555555544 6667777777766664
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.36 E-value=7.6e-11 Score=87.63 Aligned_cols=164 Identities=10% Similarity=-0.061 Sum_probs=81.5
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHhh
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI----------------LIKGLCKAGRLRTARWILKELGD 73 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
+..+-.....+...|++++|+..|++..+..+. +...|.. +..++.+.|++++|...|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455556677888888888888888775321 3344444 55555555555555555555554
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc--hHHHHHHHHHHHhCCCccChh
Q 020976 74 SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR--LKEATDYMEQMVTDGVQLDIV 151 (319)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 151 (319)
..+. +...+..+..++...|++++|+..|++..+.. |.+..++..+...|...|+ ...+...++.... ..|...
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 3222 44555555555555555555555555555543 3344444444444433332 2223333333221 111122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 152 SYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
.+.....++...|++++|...|++..+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 222233334444555555555555544
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=9.9e-11 Score=80.17 Aligned_cols=129 Identities=13% Similarity=0.145 Sum_probs=72.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.|..+...+...|++++|..+|+++.+.+. .+...+..+...+...|++++|...++++...+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 455566666666666666666666655432 2455556666666666666666666666655422 24445555555556
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666665555442 23344444555555555555555555555443
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=1.5e-10 Score=79.32 Aligned_cols=129 Identities=15% Similarity=0.178 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (319)
.|..+...+...|++++|..+++++..... .+...+..+...+...|++++|.+.++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 344555555566666666666666554322 244455555555555566666666665555443 333444445555555
Q ss_pred HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
..|++++|...++++.... +.+...+..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555554431 22344444555555555555555555555443
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.33 E-value=1.3e-10 Score=89.68 Aligned_cols=187 Identities=9% Similarity=-0.018 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCccc
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFG 117 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 117 (319)
.+...+..+...+.+.|++++|...|+++....+. + ...+..+..++.+.|++++|+..|+++.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35666777777888888888888888888875322 2 56677788888888888888888888887521 112344
Q ss_pred HHHHHHHHHH--------cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 020976 118 YCTVIAAFVK--------IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 189 (319)
Q Consensus 118 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (319)
+..+..++.. .|++++|+..|+++.... +.+......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5566677777 788888888888877752 112222222111 1111100 011246
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhc----------CCHHHHHHHHHhhccC
Q 020976 190 ILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYNCIVDRLGKD----------GKIDHAINVFESMEVK 249 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 249 (319)
.+...+...|++++|...|+.+.+.... .....+..+..+|... |++++|...|+++...
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6788899999999999999999886311 1345777888888766 8999999999988754
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.33 E-value=2.9e-09 Score=83.16 Aligned_cols=221 Identities=8% Similarity=-0.012 Sum_probs=135.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHH----Hhc--
Q 020976 22 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG--RLRTARWILKELGDSGHAPNAITYTTIMKCC----FRN-- 93 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 93 (319)
+....++|+++++.++..++. +..+|+.--..+...+ ++++++++++.+....++ +..+|+.--..+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 334446788888888776443 5666777777777777 788888888888775443 555666554444 444
Q ss_pred -CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH--HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC-----
Q 020976 94 -RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK--EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK----- 165 (319)
Q Consensus 94 -~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 165 (319)
+++++++++++++.+.. +-+..+|+.-...+.+.|.++ ++++.++++.+.. +-+...|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 56777777777777664 556666766666666777766 7777777777653 2356666666655655555
Q ss_pred -HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh-HHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHH
Q 020976 166 -LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAIN 241 (319)
Q Consensus 166 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (319)
++++++.++++....+. |...|+.....+.+.|+.. .+..+...+.+.+ -+.+...+..++.+|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66677777666665444 5556665555555555432 2334444443321 12334455555555555555555555
Q ss_pred HHHhhc
Q 020976 242 VFESME 247 (319)
Q Consensus 242 ~~~~~~ 247 (319)
+++.+.
T Consensus 280 ~~~~l~ 285 (306)
T 3dra_A 280 VYDLLK 285 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=5.5e-11 Score=104.26 Aligned_cols=173 Identities=12% Similarity=-0.031 Sum_probs=100.0
Q ss_pred hhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 21 CKNRYTDNALRMFRGLQ--------KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|.+.|+++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 55666666666666665 321 224555666666666666666666666666654322 45566666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976 93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 172 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
.|++++|++.|++..+.. +-+...+..+..++.+.|++++ +..|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666553 3345556666666666666666 66666666542 23455566666666666666666666
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976 173 LDEMEKQGFECDKYTHTILIDGLCKAG 199 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
|++..+.... +...+..+..++...+
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 6665544221 2344455555554433
No 96
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=2.3e-08 Score=86.75 Aligned_cols=116 Identities=4% Similarity=-0.055 Sum_probs=82.1
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCC-CCCChhhH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR---LRTARWILKELGDSG-HAPNAITY 83 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 83 (319)
-|..+|..++..+.+.+.++.+..+|+++... .+.+...|...+..-.+.++ ++.+..+|++..... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47788999999999999999999999999886 45577888888888888888 999999999988753 13788888
Q ss_pred HHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CCC-cccHHHHHHH
Q 020976 84 TTIMKCCFRNRKY--------KLGLEILSAMKR-KGY-TFD-GFGYCTVIAA 124 (319)
Q Consensus 84 ~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~ll~~ 124 (319)
...+....+.++. +.+.++|+.... .|. .++ ...|...+..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 8887766655543 233466665543 344 333 3455555543
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.31 E-value=1.3e-10 Score=101.89 Aligned_cols=186 Identities=10% Similarity=-0.076 Sum_probs=123.3
Q ss_pred HhcCChhHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 020976 56 CKAGRLRTARWILKELG--------DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (319)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|++.+++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777776 322 2345667777777777778888877777777653 4456667777777777
Q ss_pred cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHH
Q 020976 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 207 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (319)
.|++++|+..|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.... +...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888888777777652 3355667777777777777777 7777777766443 556677777777777788887777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCC--------HHHHHHHHHhhc
Q 020976 208 LEYMNKIGFDSNLEAYNCIVDRLGKDGK--------IDHAINVFESME 247 (319)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~ 247 (319)
|++..+.+ +.+...+..+..++...++ +++|.+.+..+.
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 77776643 2234556666666654333 555566555554
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.30 E-value=1.2e-09 Score=82.15 Aligned_cols=187 Identities=8% Similarity=-0.021 Sum_probs=123.4
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh---hhH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-P-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA---ITY 83 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 83 (319)
+...+..+...+.+.|++++|+..|+++.+..+. | ....+..+..++.+.|++++|...|+++.+..+. +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 4456667778899999999999999999875332 1 1357788889999999999999999999875332 22 244
Q ss_pred HHHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC
Q 020976 84 TTIMKCCFR------------------NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145 (319)
Q Consensus 84 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
..+..++.. .|++++|...|+++.+.. |-+...+....... .+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH---
Confidence 444444443 456677777777766552 22222222111100 0000000
Q ss_pred CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215 (319)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
.....+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|...++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0123456778889999999999999887643311 2467788888999999999999999887764
No 99
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=1.1e-08 Score=88.72 Aligned_cols=201 Identities=9% Similarity=-0.039 Sum_probs=130.2
Q ss_pred cccHHHHHHHHHHcCchHHHH-HHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCc
Q 020976 115 GFGYCTVIAAFVKIGRLKEAT-DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF---------ECD 184 (319)
Q Consensus 115 ~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~ 184 (319)
+..|...+..+...|+.++|. .+|++.... .|.+...|-..+....+.|+++.|.++|+.+..... .|+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 333444444455567777775 788777764 344555666677777778888888888887765310 121
Q ss_pred ------------HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhhccC--
Q 020976 185 ------------KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD-GKIDHAINVFESMEVK-- 249 (319)
Q Consensus 185 ------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~-- 249 (319)
...|...+....+.|+.+.|..+|....+.........|...+..-.+. ++.+.|..+|+...+.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 2356666666677778888888888877651122233444333333333 3478888888876643
Q ss_pred -CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 250 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
++..|...+......|+.+.|..+|++.+.....+ ....|...+.--.+.|+.+.+.++.+++.+..
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55666677777777788888888888887653321 34567777777777888888888888877654
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.30 E-value=7.3e-10 Score=83.39 Aligned_cols=189 Identities=10% Similarity=-0.021 Sum_probs=123.3
Q ss_pred cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc-c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--HhHHH
Q 020976 115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHTI 190 (319)
Q Consensus 115 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 190 (319)
...+..+...+.+.|++++|+..|+++...... | ....+..+..++.+.|++++|...|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556677788899999999999998875221 1 1346777888999999999999999999876443221 23444
Q ss_pred HHHHHhc------------------cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCch
Q 020976 191 LIDGLCK------------------AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF 252 (319)
Q Consensus 191 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (319)
+..++.. .|++++|...|+.+.+.. |-+............ . ... ...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----~------~~~----~~~ 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----L------KDR----LAK 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----H------HHH----HHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----H------HHH----HHH
Confidence 4444443 356666666666666542 112222211111000 0 000 001
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCcc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976 253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 318 (319)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~ 318 (319)
....+...|...|++++|+..|+++++..... ....+..+..++.+.|++++|.+.++++...+..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 11345677889999999999999998863221 1256888899999999999999999998877654
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.28 E-value=2.8e-10 Score=84.55 Aligned_cols=165 Identities=12% Similarity=-0.020 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH----------------HHHHHHhcCChhHHHHHHHHHHh
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT----------------IMKCCFRNRKYKLGLEILSAMKR 108 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 108 (319)
...+......+...|++++|...|++.....+. +...|.. +..++.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445556677888999999998888775221 3444544 55566666666666666666665
Q ss_pred CCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCcHH
Q 020976 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK--LEAAYLLLDEMEKQGFECDKY 186 (319)
Q Consensus 109 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 186 (319)
.. +-+...+..+..++...|++++|...|++..+.. |.+..++..+..++...|+ .+.+...+..... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 53 3445556666666666666666666666665542 2244555555555544332 2233333333321 122222
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNKI 214 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
.+.....++...|++++|...|++..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2333334444455666666666665553
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=1.3e-10 Score=83.87 Aligned_cols=162 Identities=12% Similarity=0.026 Sum_probs=92.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-H
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-C 90 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 90 (319)
.+......+.+.|++++|+..|++..+..+ .+...+..+...+...|++++|...+++..... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 344556667777777777777777655422 256667777777777777777777777765542 233322222111 1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHH
Q 020976 91 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAA 169 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 169 (319)
...+....+...+++..+.. +.+...+..+...+...|++++|...|+++......+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334556666665543 3345556666666666666666666666666543221 234556666666666666666
Q ss_pred HHHHHHHH
Q 020976 170 YLLLDEME 177 (319)
Q Consensus 170 ~~~~~~~~ 177 (319)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.25 E-value=4.3e-08 Score=76.62 Aligned_cols=218 Identities=8% Similarity=-0.087 Sum_probs=159.3
Q ss_pred hcCC-hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCcccHHHHHHHH----HHc-
Q 020976 57 KAGR-LRTARWILKELGDSGHAPNAITYTTIMKCCFRNR--KYKLGLEILSAMKRKGYTFDGFGYCTVIAAF----VKI- 128 (319)
Q Consensus 57 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~- 128 (319)
+.|. .++|+++++.+...++. +..+|+.--.++...+ +++++++.++.+.... +-+..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 4444 46899999999886433 5667888878888888 8999999999998875 55666777655555 555
Q ss_pred --CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC----
Q 020976 129 --GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE--AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN---- 200 (319)
Q Consensus 129 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 200 (319)
+++++++.+++.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++.+..+. +...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 78889999999988863 447778888877888888888 899999999887655 66677666666666665
Q ss_pred --hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHhhcc------CCchhHHHHHHHHHccCChhHHH
Q 020976 201 --IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH-AINVFESMEV------KDSFTYSSMVHNLCKAKRLPSAS 271 (319)
Q Consensus 201 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~ 271 (319)
++++.+.++.+.... +-|...|+.+...+.+.|+... +..+..++.. .++..+..++..|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 777888888777765 5566777777777777776333 4455555443 25566777777777778888888
Q ss_pred HHHHHHHH
Q 020976 272 KLLLSCLK 279 (319)
Q Consensus 272 ~~~~~~~~ 279 (319)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888765
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=7e-11 Score=82.89 Aligned_cols=143 Identities=8% Similarity=-0.083 Sum_probs=81.8
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 97 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (319)
..+...|++++|++.++....... .+...+..+...|.+.|++++|.+.|++..+..+. +..+|..+..++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 344555666677666666554311 13344555666666777777777777776664322 5666666666677777777
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHH-HHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976 98 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY-MEQMVTDGVQLDIVSYNTLINLYCKEG 164 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
+|+..|++..+.. +-+...+..+...+.+.|+++++... +++..+.. |-+..+|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 7777776666653 33455666666666666666554433 45555531 224445555555554444
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.24 E-value=4.3e-10 Score=96.77 Aligned_cols=156 Identities=10% Similarity=-0.013 Sum_probs=118.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 020976 23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 102 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (319)
.|++++|++.|++..+... .+...+..+...+...|++++|.+.|++..+... .+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887633 3678899999999999999999999999988643 3678899999999999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 020976 103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE---GKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (319)
+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5567788899999999999999999999998863 34677888899999999 9999999999999887
Q ss_pred CCC
Q 020976 180 GFE 182 (319)
Q Consensus 180 ~~~ 182 (319)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=1.9e-09 Score=80.24 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----ChhHHHHH
Q 020976 27 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR----KYKLGLEI 102 (319)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 102 (319)
.+|++.|++..+.| ++..+..+...|...+++++|.++|++..+.| ++..+..+...|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777753 67788888888888899999999999888764 56777777777776 6 78889888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCc-cChhhHHHHHHHHHh----cCCHHHHHHHH
Q 020976 103 LSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCK----EGKLEAAYLLL 173 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 173 (319)
|++..+.| ++..+..|...|.. .+++++|+.+|++..+.|.. .....+..+...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88887765 45667777777766 77888888888888876521 125677778888877 77888888888
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHhcc-C-----ChhHHHHHHHHHHhcCC
Q 020976 174 DEMEKQGFECDKYTHTILIDGLCKA-G-----NIKGARLHLEYMNKIGF 216 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 216 (319)
++..+. ..+...+..+...|... | +.++|...++...+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888776 22344566666666532 2 78888888888887763
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=5.4e-10 Score=87.39 Aligned_cols=168 Identities=13% Similarity=-0.018 Sum_probs=129.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 020976 42 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 121 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
+.+...+..+...+...|++++|...|++.....+. +...+..+...+.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 345667778888888999999999999998876433 6778888889999999999999999888765 3444332222
Q ss_pred -HHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccC
Q 020976 122 -IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAG 199 (319)
Q Consensus 122 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 199 (319)
...+...++.+.|...+++..... +.+...+..+...+...|++++|...|.++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 223566778888888888888763 4567788889999999999999999999998875432 2567888889999999
Q ss_pred ChhHHHHHHHHHHh
Q 020976 200 NIKGARLHLEYMNK 213 (319)
Q Consensus 200 ~~~~a~~~~~~~~~ 213 (319)
+.+++...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99988888876543
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.23 E-value=7.1e-09 Score=77.17 Aligned_cols=138 Identities=15% Similarity=0.105 Sum_probs=63.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC----CHHHHHHHHH
Q 020976 99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG----KLEAAYLLLD 174 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 174 (319)
|.+.|++..+.| ++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444455544443 34444455555555555555555555555443 33344444444444 3 4555555555
Q ss_pred HHHHcCCCCcHHhHHHHHHHHhc----cCChhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHh
Q 020976 175 EMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGK----DGKIDHAINVFES 245 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 245 (319)
+..+.| +...+..+...|.. .+++++|..+|++..+.+.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 33344444444443 44555555555554443310 013344444444444 3444444444444
Q ss_pred h
Q 020976 246 M 246 (319)
Q Consensus 246 ~ 246 (319)
.
T Consensus 155 A 155 (212)
T 3rjv_A 155 S 155 (212)
T ss_dssp H
T ss_pred H
Confidence 3
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.21 E-value=7.6e-10 Score=95.26 Aligned_cols=154 Identities=10% Similarity=-0.071 Sum_probs=119.2
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHH
Q 020976 58 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 137 (319)
.|++++|.+.|++..+... -+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887533 267889999999999999999999999999875 55678889999999999999999999
Q ss_pred HHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc---CChhHHHHHHHHHHhc
Q 020976 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA---GNIKGARLHLEYMNKI 214 (319)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 214 (319)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+...+... |+.++|...+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 346778999999999999999999999999987543 667888899999999 9999999999999887
Q ss_pred C
Q 020976 215 G 215 (319)
Q Consensus 215 ~ 215 (319)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=1e-09 Score=85.84 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=131.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH-
Q 020976 77 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT- 155 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 155 (319)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3456677788888899999999999999998875 556778888999999999999999999988775 344433322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcC
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGKDG 234 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 234 (319)
....+...++.++|...+++.....+. +...+..+...+...|++++|...+.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 333466778888899999998887544 6778888999999999999999999999987421 12567888999999999
Q ss_pred CHHHHHHHHHhh
Q 020976 235 KIDHAINVFESM 246 (319)
Q Consensus 235 ~~~~a~~~~~~~ 246 (319)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 999998888764
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.20 E-value=1.9e-10 Score=80.66 Aligned_cols=81 Identities=15% Similarity=0.055 Sum_probs=33.6
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199 (319)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
.+...|.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...|++..+..+. +...+..+...+.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34444444444444444444444331 123334444444444444444444444444443222 2333444444444444
Q ss_pred Chh
Q 020976 200 NIK 202 (319)
Q Consensus 200 ~~~ 202 (319)
+++
T Consensus 114 ~~~ 116 (150)
T 4ga2_A 114 VTD 116 (150)
T ss_dssp SSS
T ss_pred ChH
Confidence 443
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=3.9e-10 Score=81.38 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH-H
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA-F 125 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~ 125 (319)
.+..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|+..+++..... |++..+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 345566677788888888888888766432 256777888888888888888888888776553 343332222211 1
Q ss_pred HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHH
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGA 204 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 204 (319)
...++...+...+++..... +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223344677777776642 3356677777777888888888888888777664432 245667777777777887777
Q ss_pred HHHHHHHH
Q 020976 205 RLHLEYMN 212 (319)
Q Consensus 205 ~~~~~~~~ 212 (319)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.16 E-value=6.7e-10 Score=87.80 Aligned_cols=198 Identities=10% Similarity=-0.050 Sum_probs=112.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976 23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK-AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
.|++++|.+++++..+.. +. . +.+ .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~-----~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT-----S----FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC-----C----SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc-----c----ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456666776666665431 11 1 112 45566666665554 345667777888777
Q ss_pred HHHHHHhCCC---CC--CcccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHHHHHhcCCHHHHHH
Q 020976 102 ILSAMKRKGY---TF--DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYL 171 (319)
Q Consensus 102 ~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
.|.+..+... .+ -..+|+.+..+|...|++++|+..|++.... |-+. ...++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776654310 00 1335666667777777777777777766542 1111 13456666666666 77777777
Q ss_pred HHHHHHHcCCC---C--cHHhHHHHHHHHhccCChhHHHHHHHHHHhcC----CCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 020976 172 LLDEMEKQGFE---C--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG----FDSN-LEAYNCIVDRLGKDGKIDHAIN 241 (319)
Q Consensus 172 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~ 241 (319)
.|++..+.... + ...++..+...+...|++++|...+++..+.. ..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77766543111 0 13456666667777777777777777666531 1111 1244455555666677777777
Q ss_pred HHHhhc
Q 020976 242 VFESME 247 (319)
Q Consensus 242 ~~~~~~ 247 (319)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776655
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.14 E-value=5.6e-08 Score=76.84 Aligned_cols=183 Identities=8% Similarity=-0.006 Sum_probs=133.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCF 91 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
++.+-....+.+..++|+++++.+...+.. +..+|+.--..+...| .+++++++++.+....++ +..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 334444445556667899999999887554 6777888777777778 599999999999987554 7788888777777
Q ss_pred hc-C-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH--------HHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976 92 RN-R-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK--------EATDYMEQMVTDGVQLDIVSYNTLINLYC 161 (319)
Q Consensus 92 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
+. + ++++++++++++.+.. +.+..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 76 6 7889999999998775 557777777666666666666 8888888888764 347777888777777
Q ss_pred hcCC-------HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC
Q 020976 162 KEGK-------LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 200 (319)
Q Consensus 162 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (319)
+.++ ++++++.+++.....+. |...|+.+-..+.+.|.
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 7765 67888888887776544 66666655555555444
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=5.2e-09 Score=82.70 Aligned_cols=185 Identities=8% Similarity=-0.049 Sum_probs=126.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CcccHHHH
Q 020976 52 IKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRK----GYTF-DGFGYCTV 121 (319)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 121 (319)
...|...|++++|...|.+.... +..+ -..+|+.+..+|...|++++|+..|++..+. |-+. ...++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677888999988888877652 1111 1457788888888889999999988877643 2111 13466777
Q ss_pred HHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc-HHhHHHH
Q 020976 122 IAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFECD-KYTHTIL 191 (319)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l 191 (319)
...|.. |++++|+..|++.... +..+ ...++..+...+...|++++|+..|++..+. +..+. ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 778877 9999999999887763 1111 1456788899999999999999999988753 21111 2256666
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhcCCHHHHHH
Q 020976 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNL------EAYNCIVDRLGKDGKIDHAIN 241 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~ 241 (319)
..++...|++++|...+++.. .. |+. .....++.++ ..|+.+.+.+
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SI--PGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777778899999999999988 42 321 1234444444 5677666655
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.11 E-value=1.4e-08 Score=75.57 Aligned_cols=127 Identities=12% Similarity=-0.005 Sum_probs=90.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|.+.|++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35556667777888888888887663 4577788888888888888888888888877653 235677777788888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCc----------------ccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDG----------------FGYCTVIAAFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
..|++++|++.+++..+.. +.+. ..+..+..++.+.|++++|...|++....
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888877653 2222 45566666677777777777777776664
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.11 E-value=1.4e-08 Score=75.58 Aligned_cols=132 Identities=8% Similarity=-0.042 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (319)
..+..+...+...|++++|.+.|++.. .|+...+..+..++...|++++|++.+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567778889999999999998874 5688899999999999999999999999998775 55677888899999
Q ss_pred HHcCchHHHHHHHHHHHhCCCc--------------c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQ--------------L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (319)
...|++++|...|++....... | ....+..+..++...|++++|...|++..+....
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999999999885211 1 1267888889999999999999999998876443
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=5.5e-08 Score=76.25 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=73.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCCc----ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc-cC----hhhHHHH
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKG-YTFDG----FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD----IVSYNTL 156 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 156 (319)
+..+...|++++|.+++++..+.. ..|+. ..+..+...+...+++++|+..+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344455555555555555554421 01111 11223444444445555555555555542111 11 1235555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----c-CCCCc-HHhHHHHHHHHhccCChhHHHHHHHHHHhc----CCCC-ChhhHHH
Q 020976 157 INLYCKEGKLEAAYLLLDEMEK----Q-GFECD-KYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNC 225 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ 225 (319)
..+|...|++++|...+++..+ . +..+. ..++..+...|...|++++|...+++..+. +..+ -..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5555555555555555555542 1 11111 124555555555566666665555554432 1111 1345555
Q ss_pred HHHHHHhcC-CHHHHHHHHHhh
Q 020976 226 IVDRLGKDG-KIDHAINVFESM 246 (319)
Q Consensus 226 l~~~~~~~~-~~~~a~~~~~~~ 246 (319)
+..+|.+.| ++++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 555555555 345555555543
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=2.5e-09 Score=83.30 Aligned_cols=195 Identities=9% Similarity=-0.014 Sum_probs=116.5
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+...+..+...+.+.|++++|+..|+...+.... +...|..+..++.+.|++++|...+++..+... .+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 35667778888888888888888888888775332 677888888888888888888888888877543 2567788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
.++...|++++|...|++..+.. +-+...+...+....+.. .+.. +........+.+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 88888888888888888877542 112112222222222111 1111 112222223334433333322 2 256777
Q ss_pred HHHHHHHHHHHcCCCCcHH-hHHHHHHHHhcc-CChhHHHHHHHHHHh
Q 020976 168 AAYLLLDEMEKQGFECDKY-THTILIDGLCKA-GNIKGARLHLEYMNK 213 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 213 (319)
+|.+.++...+. .|+.. ....+...+.+. +.++++..+|..+.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777666554 33332 223333333333 456667777766654
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=1.2e-07 Score=74.32 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=105.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCcH----HhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----hhhHHH
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQGF-ECDK----YTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SN----LEAYNC 225 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 225 (319)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++...+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35666777778888877777765322 2221 12334555566667788888888777764222 12 125777
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcc-------C---CchhHHHHHHHHHccCChhHHHHHHHHHHHc----CCccC-HHHHH
Q 020976 226 IVDRLGKDGKIDHAINVFESMEV-------K---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRIL-KSAQK 290 (319)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~-------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 290 (319)
+..+|...|++++|...++++.. . ...++..+...|...|++++|...+++.++. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77778888888888887777652 1 2346777888888888888888888877653 22222 56788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHh
Q 020976 291 AVVDGLRHSGC-RREAKKIQSKIRM 314 (319)
Q Consensus 291 ~l~~~~~~~g~-~~~a~~~~~~~~~ 314 (319)
.+..++.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888884 5888888877543
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=1.8e-08 Score=71.61 Aligned_cols=127 Identities=11% Similarity=0.011 Sum_probs=63.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.|..+...+...|++++|...|++..+... .+..++..+...+...|++++|...+++...... .+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 344555555556666666666666555422 2455555555555566666666666655554321 24445555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHH--HHHHHHcCchHHHHHHHHHH
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTV--IAAFVKIGRLKEATDYMEQM 141 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~ 141 (319)
..|++++|.+.+++..+.. +.+...+..+ ...+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555442 2222222222 22244445555555554443
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.03 E-value=1.2e-08 Score=69.07 Aligned_cols=97 Identities=12% Similarity=-0.016 Sum_probs=53.7
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
..+......+.+.|++++|++.|++..+..+ .+..+|..+..++.+.|++++|.+.|++..+.... +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 3355555556666666666666666555432 24555555555666666666666666655554222 445555555555
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 020976 91 FRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~ 109 (319)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5556666666665555554
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=7.7e-07 Score=74.85 Aligned_cols=166 Identities=7% Similarity=-0.104 Sum_probs=93.8
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhh-CCCC-CChhhHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-LRTARWILKELGD-SGHA-PNAITYT 84 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-~~~~-~~~~~~~ 84 (319)
--...|...+..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+.... .|.. .+...|.
T Consensus 13 ~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 334456666666554 6777888888777763 3577777777776666553 3455666666554 2322 2556666
Q ss_pred HHHHHHH----hcCChhHHHHHHHHHHhCCCCCCc--c------------------------------------------
Q 020976 85 TIMKCCF----RNRKYKLGLEILSAMKRKGYTFDG--F------------------------------------------ 116 (319)
Q Consensus 85 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~--~------------------------------------------ 116 (319)
..+..+. ..++.+.+.++|++.... ++.. .
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6665443 234566677777776653 2110 1
Q ss_pred ------cHHHHHHHHHHc--Cc-----hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 117 ------GYCTVIAAFVKI--GR-----LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 117 ------~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
.|...+..-... +- .+.+..+|+++... .+.+...|...+..+.+.|+.+.|..++++....
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 111111110000 00 22345566666654 2445666777777777888888888888888776
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.03 E-value=9.5e-07 Score=69.88 Aligned_cols=176 Identities=9% Similarity=-0.010 Sum_probs=130.0
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-C-ch
Q 020976 55 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI-G-RL 131 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~ 131 (319)
..+.+..++|+++++++...++. +..+|+.--..+...+ .+++++++++.+.... +-+..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 33445567899999999886544 6677888777777788 5999999999999875 56777888877777776 7 88
Q ss_pred HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC---
Q 020976 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE--------AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN--- 200 (319)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 200 (319)
++++.+++.+.+.. +-+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 99999999998863 447777777666666666666 888899998887655 77777777777777665
Q ss_pred ----hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 020976 201 ----IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235 (319)
Q Consensus 201 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (319)
++++...++...... +-|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 577777777777764 4566666665555555444
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.02 E-value=2.9e-09 Score=82.94 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=70.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976 79 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..... +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566677777777788888888887777653 4466667777777777788888887777777652 335566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 020976 159 LYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~ 179 (319)
++...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=2.2e-08 Score=68.19 Aligned_cols=116 Identities=9% Similarity=-0.086 Sum_probs=64.9
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+...|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|.+.+++..+... .+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 3455566666666666666666666666655422 2455566666666666666666666666655422 2455555566
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (319)
.++...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 66666666666666666655442 223333444444443
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=1.4e-08 Score=68.82 Aligned_cols=119 Identities=9% Similarity=-0.089 Sum_probs=64.8
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+...|++++|+..|++...... .+...+..+...+...|++++|.+.+++...... .+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 344555566666666666666666666555422 2455555566666666666666666666555321 23455555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 130 (319)
++...|++++|.+.+++..+.. +.+...+..+..++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5666666666666666555542 2234444444444444443
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=4.6e-08 Score=76.66 Aligned_cols=203 Identities=9% Similarity=-0.008 Sum_probs=138.5
Q ss_pred CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-----
Q 020976 5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN----- 79 (319)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 79 (319)
...|+..+...+...+.-. ++.-......-. +.....+...+..+...|++++|.+.+++..+.....+
T Consensus 41 ~~~~~~~~l~~l~~~l~~~--~~~l~~~~~~~~----~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~ 114 (293)
T 2qfc_A 41 AVYPSMDILQGIAAKLQIP--IIHFYEVLIYSD----IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF 114 (293)
T ss_dssp SSCCCHHHHHHHTTTSCCC--THHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcC--HHHHhccccccc----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHH
Confidence 3467776665554444322 222222111111 12345666778888999999999999988877532211
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CC--cccHHHHHHHHHHcCchHHHHHHHHHHHh---C-CCcc--
Q 020976 80 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT---FD--GFGYCTVIAAFVKIGRLKEATDYMEQMVT---D-GVQL-- 148 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~-- 148 (319)
...+..+...+...|++++|+..+++..+.... +. ..+++.+...|...|++++|...+++... . +..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~ 194 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence 123445666778889999999999988754211 11 34788899999999999999999998873 2 1111
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-cHHhHHHHHHHHhccCChhHH-HHHHHHHHh
Q 020976 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG----FEC-DKYTHTILIDGLCKAGNIKGA-RLHLEYMNK 213 (319)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 213 (319)
...++..+..+|...|++++|...+++..+.. ... -..+|..+...+...|++++| ...++....
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 12578899999999999999999999876531 111 156788899999999999999 777777654
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.99 E-value=2.9e-08 Score=66.63 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=59.0
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...|..+...+...|++++|++.|+++.+... .+..++..+...+...|++++|..+++++.... +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34566666666666666666666666655422 245566666666666666666666666665542 2245555666666
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 020976 90 CFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~ 109 (319)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.98 E-value=3.6e-08 Score=69.94 Aligned_cols=128 Identities=17% Similarity=0.062 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (319)
..+..+...+...|++++|...|++...... .+..++..+..++...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4556666666777777777777777666432 256666666667777777777777777666653 34455566666666
Q ss_pred HHcCchHHHHHHHHHHHhCCCccChhhHH--HHHHHHHhcCCHHHHHHHHHHH
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYN--TLINLYCKEGKLEAAYLLLDEM 176 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
...|++++|...+++..... +.+...+. ..+..+...|++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66677777777766666542 12333332 2223355556666666666554
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=9.9e-09 Score=71.64 Aligned_cols=98 Identities=9% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (319)
...+..+...+.+.|++++|...|+++....+. +...|..+..++...|++++|+..|++..+.. |.++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 334555555555566666666666665554322 45555555555556666666666665555543 3345555555555
Q ss_pred HHHcCchHHHHHHHHHHHhC
Q 020976 125 FVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (319)
+.+.|++++|...|++....
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55556666666665555553
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.96 E-value=1.4e-08 Score=74.80 Aligned_cols=156 Identities=14% Similarity=0.002 Sum_probs=90.7
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh----CCCC-CChhhHHHHHHHHHhcCC
Q 020976 21 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD----SGHA-PNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~ 95 (319)
...|++++|.++++.+... ......++..+...+...|++++|...+++... .+.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567888888855555432 223566777777778888888888888777655 1111 123456666677777777
Q ss_pred hhHHHHHHHHHHhC----CCC--CCcccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcC
Q 020976 96 YKLGLEILSAMKRK----GYT--FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEG 164 (319)
Q Consensus 96 ~~~a~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~ 164 (319)
+++|.+.+++..+. +-. .....+..+...+...|++++|...+++.... +.+ ....++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777766543 101 11234555666666777777777777665532 111 01223455666666667
Q ss_pred CHHHHHHHHHHHH
Q 020976 165 KLEAAYLLLDEME 177 (319)
Q Consensus 165 ~~~~a~~~~~~~~ 177 (319)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777666666554
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=3.9e-08 Score=66.48 Aligned_cols=91 Identities=11% Similarity=0.086 Sum_probs=35.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976 86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
....+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..++...|+
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence 3333444444444444444433332 2233333334444444444444444444433321 1223333444444444444
Q ss_pred HHHHHHHHHHHHH
Q 020976 166 LEAAYLLLDEMEK 178 (319)
Q Consensus 166 ~~~a~~~~~~~~~ 178 (319)
+++|.+.|++..+
T Consensus 97 ~~~A~~~~~~al~ 109 (126)
T 4gco_A 97 WSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.96 E-value=9.4e-08 Score=74.92 Aligned_cols=159 Identities=12% Similarity=0.013 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhCCCccC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---Cc--HHh
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE---CD--KYT 187 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 187 (319)
+...+..+...|++++|...+++........+ ...+..+...+...|++++|...+.+..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34445555566666666666655554321100 011223334445555666666666555532111 11 224
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhc-CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------Cch
Q 020976 188 HTILIDGLCKAGNIKGARLHLEYMNKI-GFDSN-----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSF 252 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~ 252 (319)
++.+...|...|++++|...+++..+. ...|+ ..++..+..+|...|++++|...+++.... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 555555555566666666666555421 00111 134455555555555555555555543321 023
Q ss_pred hHHHHHHHHHccCChhHH-HHHHHH
Q 020976 253 TYSSMVHNLCKAKRLPSA-SKLLLS 276 (319)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a-~~~~~~ 276 (319)
+|..+...|...|++++| ...+++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 344445555555555555 333433
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.95 E-value=1.1e-08 Score=73.67 Aligned_cols=122 Identities=5% Similarity=0.019 Sum_probs=82.0
Q ss_pred HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCCh--
Q 020976 20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKY-- 96 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 96 (319)
+...|++++|+..++...+... .+...+..+...+...|++++|...|++...... .+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 3456777777777777766533 3667777777777788888888888877776432 256666666666 6677776
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976 97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
++|...+++..+.. +.+...+..+...+...|++++|...|+++...
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777777664 445566667777777777777777777777765
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=1.7e-08 Score=70.46 Aligned_cols=103 Identities=11% Similarity=-0.010 Sum_probs=90.7
Q ss_pred CCc-chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976 6 LTP-CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84 (319)
Q Consensus 6 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
+.| +...+..+...+.+.|++++|+..|+...+..+. +...|..+..++...|++++|...|++.....+. ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 444 4556888889999999999999999999987543 7889999999999999999999999999986533 688899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKG 110 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (319)
.+..++...|++++|...|++..+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999873
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.93 E-value=5.1e-08 Score=66.31 Aligned_cols=117 Identities=12% Similarity=0.010 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
+...+..+...+...|++++|...|++...... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 455666666777777777777777777665432 255666666666666777777777776666553 334555666666
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 163 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
++.+.|++++|...|++..... +.+...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666665542 22334444444444433
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.92 E-value=6e-08 Score=65.02 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (319)
...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555566666666666666666665532 1244555555555556666666666665555443 3344445555555
Q ss_pred HHHcCchHHHHHHHHHHHh
Q 020976 125 FVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~ 143 (319)
+...|++++|...++++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=4.8e-08 Score=78.10 Aligned_cols=151 Identities=9% Similarity=0.010 Sum_probs=102.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--------------hhhHHHHHHH
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--------------AITYTTIMKC 89 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 89 (319)
+++++|++.|+...+... -+...+..+...+.+.|++++|...|++......... ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444332211 1456777777777777888888888877776432211 4677778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976 90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+.+.|++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..... +.+...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887764 4566777777888888888888888888877752 33566777777788888887777
Q ss_pred -HHHHHHHH
Q 020976 170 -YLLLDEME 177 (319)
Q Consensus 170 -~~~~~~~~ 177 (319)
...+..|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44555554
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=2.5e-08 Score=73.43 Aligned_cols=157 Identities=11% Similarity=-0.062 Sum_probs=91.7
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCcccHHHHHHHHHHcCc
Q 020976 56 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK----GY-TFDGFGYCTVIAAFVKIGR 130 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~ 130 (319)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567788888755544332 2234566777777777888888888877776651 11 1223456666667777777
Q ss_pred hHHHHHHHHHHHhC----CCc--cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCc--HHhHHHHHHHHhccC
Q 020976 131 LKEATDYMEQMVTD----GVQ--LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---FECD--KYTHTILIDGLCKAG 199 (319)
Q Consensus 131 ~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~ 199 (319)
+++|...+++.... +.. .....+..+...+...|++++|...+++..... ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777766542 111 123345666677777777777777777665321 1111 123455666666677
Q ss_pred ChhHHHHHHHHHHh
Q 020976 200 NIKGARLHLEYMNK 213 (319)
Q Consensus 200 ~~~~a~~~~~~~~~ 213 (319)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777666665543
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.89 E-value=6.9e-08 Score=65.31 Aligned_cols=119 Identities=11% Similarity=-0.017 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
+...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455556666666666666666666665542 2245556666666666666666666666665543 334445555555
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 165 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
.+...|++++|...+++..... +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666655542 2234444455555544443
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=2e-08 Score=70.09 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (319)
...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|++.|++..... +.++..+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34455555555666666666666666555422 245555555566666666666666666655543 3344555555556
Q ss_pred HHHcCchHHHHHHHHHHHh
Q 020976 125 FVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~ 143 (319)
+...|++++|...|++...
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665554
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=5.7e-08 Score=69.95 Aligned_cols=118 Identities=8% Similarity=0.048 Sum_probs=51.2
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH-HHHcCch--HHH
Q 020976 58 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA-FVKIGRL--KEA 134 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a 134 (319)
.|++++|...+++...... .+...+..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3444555555554444321 234444455555555555555555555544432 2233334444444 3444444 455
Q ss_pred HHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
...+++..... +.+...+..+..++...|++++|...+++..+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55554444431 12233444444444444555555444444444
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=6.8e-08 Score=66.81 Aligned_cols=96 Identities=8% Similarity=-0.105 Sum_probs=51.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.+..+...+.+.|++++|+..|+.....++ .+...|..+..++...|++++|...|++.....+. +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 344445555555666666666655555422 24555555555555566666666666555554322 4445555555555
Q ss_pred hcCChhHHHHHHHHHHhC
Q 020976 92 RNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~ 109 (319)
..|++++|.+.|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 556666665555555543
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.85 E-value=9.3e-08 Score=76.46 Aligned_cols=152 Identities=9% Similarity=-0.026 Sum_probs=115.0
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------cccHHHHH
Q 020976 58 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD---------------GFGYCTVI 122 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll 122 (319)
.+++++|.+.++...... +-+...+..+...+.+.|++++|+..|++..+.. +.+ ...|..+.
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence 355566665555443321 1156778888888999999999999999888764 222 37888888
Q ss_pred HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976 123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 202 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
.++.+.|++++|+..+++..... +.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988863 446778888899999999999999999998887543 5667888888888888888
Q ss_pred HH-HHHHHHHHh
Q 020976 203 GA-RLHLEYMNK 213 (319)
Q Consensus 203 ~a-~~~~~~~~~ 213 (319)
++ ...+..|..
T Consensus 282 ~a~~~~~~~~~~ 293 (336)
T 1p5q_A 282 AREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 87 445555543
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=3e-07 Score=70.35 Aligned_cols=188 Identities=12% Similarity=-0.050 Sum_probs=112.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHhhCCCCCC---------------
Q 020976 22 KNRYTDNALRMFRGLQKHGFVPELVTYNIL-------IKGLCKAGRLRTARWILKELGDSGHAPN--------------- 79 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 79 (319)
..++...|.+.|.++.+..+. ....|..+ ...+...++..++...+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 577888888888888776433 55666665 3444444444444444444333 2221
Q ss_pred -------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC--h
Q 020976 80 -------AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD--I 150 (319)
Q Consensus 80 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 150 (319)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122334556667778888888877776543 322244455556777788888887777544321 111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3566677777778888888888877764332143 2344556666677777788887777777653
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.2e-07 Score=72.47 Aligned_cols=183 Identities=8% Similarity=-0.073 Sum_probs=124.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHH-------HHHHHHcCchHHHHHHHHHHHhCCCccC---------------
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTV-------IAAFVKIGRLKEATDYMEQMVTDGVQLD--------------- 149 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 149 (319)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5788999999999998875 4456667766 4555555555555555555443 1221
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--h
Q 020976 150 -------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN--L 220 (319)
Q Consensus 150 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 220 (319)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123446677888899999999988877654 333355556667788889999988887554421 111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhccCC--c----hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 221 EAYNCIVDRLGKDGKIDHAINVFESMEVKD--S----FTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
..+..+..++...|++++|+..|++....+ + ........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 366777888888888888888888875332 2 24556667778888888888888888876
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.84 E-value=2.4e-07 Score=61.35 Aligned_cols=99 Identities=12% Similarity=-0.048 Sum_probs=63.9
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
++..+..+...+...|++++|...|+....... .+...+..+...+...|++++|...+++...... .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 345566666677777777777777777665432 2556666666667777777777777776665432 24556666666
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 020976 89 CCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~ 109 (319)
++...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 666677777777777666654
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.83 E-value=3.7e-06 Score=66.21 Aligned_cols=131 Identities=9% Similarity=-0.044 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--C
Q 020976 28 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGR----------LRTARWILKELGDSGHAPNAITYTTIMKCCFRNR--K 95 (319)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 95 (319)
+|+++++.+...++. +..+|+.--..+...+. +++++.+++.+....++ +..+|+.-..++...+ .
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCccc
Confidence 566666666654332 33444433333322222 45555566665554332 5555555555555555 2
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc-hHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR-LKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (319)
+++++++++++.+.. +-|..+|+.-...+...|. ++++++.++.+.... +-|..+|+.....+..
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 556666666666554 4455555555555555555 355666666655543 2344555544444433
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=1.4e-07 Score=65.70 Aligned_cols=99 Identities=8% Similarity=-0.087 Sum_probs=87.3
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+.+.|++++|+..|+....... .+...|..+..++...|++++|...|++.....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 456678888899999999999999999988644 37889999999999999999999999999886433 6788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 020976 89 CCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~ 109 (319)
++...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998876
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.2e-07 Score=62.65 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=63.3
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...|..+...+.+.|++++|+..|++..+... .+...|..+..++.+.|++++|...+++..+.... +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 44566666667777777777777777666532 25666666677777777777777777776664322 45566666666
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 020976 90 CFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~ 109 (319)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 66677777777666666544
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.81 E-value=8.4e-09 Score=75.88 Aligned_cols=123 Identities=13% Similarity=0.079 Sum_probs=58.2
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh----------------h
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA----------------I 81 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~ 81 (319)
......|+++++.+.|+.-.... ......+..+...+...|++++|...|++....... +. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHH
Confidence 33444555555555554322210 113455666677777777777777777777663221 11 3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
.+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44444455555555555555555554442 23344444444455555555555555555444
No 153
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=1.1e-05 Score=67.83 Aligned_cols=289 Identities=8% Similarity=-0.062 Sum_probs=152.5
Q ss_pred cchHhHHHHHHHHh----hcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH-------------hcCChhHHHHHHH
Q 020976 8 PCTATFNIMLNGLC----KNRYTDNALRMFRGLQKHGFVPEL-VTYNILIKGLC-------------KAGRLRTARWILK 69 (319)
Q Consensus 8 p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~-------------~~~~~~~a~~~~~ 69 (319)
++...|...+..+. .+++.+.+.++|++..... ..+. ..|......-. ..+.+..|..+++
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~ 161 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQ 161 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHH
Confidence 36677888877765 3567889999999998731 1121 22222111100 0112233344444
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHH
Q 020976 70 ELGDSGHAPNAITYTTIMKCCFRNR--K-----YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142 (319)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (319)
.+...-...+...|...+..-...+ - .+.+..+|+++.... +.++..|...+..+.+.|+.+.|..++++..
T Consensus 162 ~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4332100013335555544322211 0 234566777776653 5556667777777777788888888888877
Q ss_pred hCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------CCCcHHhHHHHHHHHhccCChhHHHHHHHH
Q 020976 143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG------------FECDKYTHTILIDGLCKAGNIKGARLHLEY 210 (319)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (319)
.. |.+...+.. |....+.++. ++.+.+.- .......|...+....+.++.+.|..+|+.
T Consensus 241 ~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~ 311 (493)
T 2uy1_A 241 EM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311 (493)
T ss_dssp HH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76 333322221 2221111111 22222110 001123455556655566677778878777
Q ss_pred HHhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH
Q 020976 211 MNKIGFDSNLEAYNCIVDRLGKD-GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 286 (319)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (319)
. +.. ..+...|...+..-... ++++.|..+|+..... ++..|...+......|+.+.|..+|+++. ...
T Consensus 312 A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~ 384 (493)
T 2uy1_A 312 L-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTS 384 (493)
T ss_dssp H-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBH
T ss_pred h-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHH
Confidence 7 321 12333443222222222 3577777777765532 44455566666667777777777777752 245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 287 SAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
..|...+.--...|+.+.+.+++++...
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777666667777777777766553
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.78 E-value=3.4e-07 Score=64.92 Aligned_cols=100 Identities=9% Similarity=-0.008 Sum_probs=77.1
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+...|..+...+.+.|++++|++.|++..+.... +...|..+..+|...|++++|...|++....... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 45666777888888888888888888888775432 6777888888888888888888888888775432 577778888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 020976 88 KCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.++...|++++|.+.|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888887765
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=2.3e-07 Score=63.45 Aligned_cols=100 Identities=12% Similarity=-0.013 Sum_probs=66.3
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 87 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+...|..+...+...|++++|+..|+...+... .+...|..+..++...|++++|...+++....... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 3456666677777777777777777777666532 25666677777777777777777777777664322 556666677
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 020976 88 KCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777666544
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=1.9e-07 Score=63.20 Aligned_cols=97 Identities=8% Similarity=0.025 Sum_probs=54.3
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CC----hhhHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PN----AITYT 84 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 84 (319)
.++..+...+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|++.+++..+.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34555666666666666666666666654322 4556666666666666666666666665542111 01 12344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKR 108 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~ 108 (319)
.+..++...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555555566666666555544
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.6e-07 Score=62.32 Aligned_cols=96 Identities=10% Similarity=-0.014 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (319)
..+..+...+.+.|++++|...|++..+... .+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 4455555556666666666666666655422 245555556666666666666666666655543 33444555555555
Q ss_pred HHcCchHHHHHHHHHHHh
Q 020976 126 VKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~ 143 (319)
...|++++|...|++...
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 556666666665555554
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=6.1e-07 Score=59.31 Aligned_cols=59 Identities=12% Similarity=0.005 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976 48 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
+..+...+...|++++|...|++...... .+...+..+..++...|++++|...+++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33334444444444444444444433211 123333333333444444444444444333
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=2.3e-07 Score=64.09 Aligned_cols=99 Identities=16% Similarity=0.047 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
+...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|+..|++..... +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 344555666677777778888777777776533 256677777777777777777777777777664 445666777777
Q ss_pred HHHHcCchHHHHHHHHHHHhC
Q 020976 124 AFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (319)
++...|++++|...|+.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777654
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.74 E-value=1.8e-05 Score=62.39 Aligned_cols=175 Identities=8% Similarity=-0.006 Sum_probs=106.3
Q ss_pred HHHHHHHHHH---HHhcCChh-HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCC
Q 020976 45 LVTYNILIKG---LCKAGRLR-TARWILKELGDSGHAPNAITYTTIMKCCFRNRK----------YKLGLEILSAMKRKG 110 (319)
Q Consensus 45 ~~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~ 110 (319)
...|..+... ..+.|.+. +|+++++.+...++. +..+|+.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 3445444433 33456654 788888888875433 45556654444433332 567777777777654
Q ss_pred CCCCcccHHHHHHHHHHcCc--hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCcHHh
Q 020976 111 YTFDGFGYCTVIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYT 187 (319)
Q Consensus 111 ~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 187 (319)
+-+..+|+.-...+.+.++ +++++.+++.+.+.. +-+..+|+.-...+...|. ++++++.++.+.+..+. |...
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence 5566777776666666663 678888888877753 3466777776666777777 47788888877776544 5556
Q ss_pred HHHHHHHHhcc--------------CChhHHHHHHHHHHhcCCCCChhhHH
Q 020976 188 HTILIDGLCKA--------------GNIKGARLHLEYMNKIGFDSNLEAYN 224 (319)
Q Consensus 188 ~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (319)
|+.....+... +.++++...+....... |-|...|+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~ 231 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWF 231 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 65555444433 23455566665555543 33444444
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=3.5e-07 Score=67.08 Aligned_cols=132 Identities=9% Similarity=-0.114 Sum_probs=99.6
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---------------LVTYNILIKGLCKAGRLRTARWILKELGDS 74 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
...+..+...+...|++++|+..|++..+...... ..++..+..++...|++++|...+++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44577788889999999999999999987532211 278888999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH-HHHHHHHh
Q 020976 75 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT-DYMEQMVT 143 (319)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~ 143 (319)
. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++..++. ..+..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 3368889999999999999999999999998774 446667777777777766666555 44444433
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.72 E-value=1.6e-07 Score=63.44 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=65.7
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCC----hhhH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH--APN----AITY 83 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 83 (319)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4556667777777777777777777776653 23566677777777777777777777777665321 111 4556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 84 TTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
..+..++...|++++|.+.+++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666667777777777777766654
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.8e-06 Score=71.52 Aligned_cols=193 Identities=7% Similarity=-0.012 Sum_probs=108.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCc----------------ccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccC
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTFDG----------------FGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLD 149 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 149 (319)
.+.+.+.|++++|++.|..+.+..-.... ..+..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567778888888888888765311110 12455667777777777777777766542 00111
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhc--CC--
Q 020976 150 I----VSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GF-- 216 (319)
Q Consensus 150 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 216 (319)
. .+.+.+...+...|+++++.+++...... +..+ -..++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222333334456677777777665431 2222 1345566667777777777777777666543 11
Q ss_pred -CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----C-----chhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 217 -DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----D-----SFTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 217 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
+....++..++..|...|++++|..++++.... + ...+..+...+...+++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111345566666677777777777766654422 1 12344455555666666666666666544
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.70 E-value=5e-07 Score=61.04 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976 48 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
+..+...+.+.|++++|++.|++..+..+. +..+|..+..+|...|++++|++.+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444444432211 23334444444444444444444444433
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.70 E-value=3e-07 Score=60.26 Aligned_cols=25 Identities=8% Similarity=-0.121 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEME 177 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
+..+..++...|++++|...+++..
T Consensus 43 ~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 43 WLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333344444444444444444433
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.70 E-value=4.8e-07 Score=59.21 Aligned_cols=99 Identities=9% Similarity=-0.115 Sum_probs=68.2
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--ChhhHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP--NAITYTTI 86 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 86 (319)
+...|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 445566677777777777777777777766532 256667777777777777777777777776642 22 45666777
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhC
Q 020976 87 MKCCFRN-RKYKLGLEILSAMKRK 109 (319)
Q Consensus 87 ~~~~~~~-~~~~~a~~~~~~~~~~ 109 (319)
..++... |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777777665
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=8.8e-07 Score=61.29 Aligned_cols=98 Identities=9% Similarity=-0.126 Sum_probs=57.1
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|...+++...... .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 4455566666666666666666666666553 233 45555566666666666666666666555321 1445555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.+..++...|++++|.+.+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5556666666666666666665554
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.68 E-value=5.6e-07 Score=61.50 Aligned_cols=98 Identities=9% Similarity=-0.037 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
+...+..+...+...|++++|...|++...... .+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 556666677777777777777777777666432 245666667777777777777777777766654 345556666666
Q ss_pred HHHHcCchHHHHHHHHHHHh
Q 020976 124 AFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~ 143 (319)
++...|++++|...|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 67777777777777766655
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.66 E-value=3.9e-07 Score=61.00 Aligned_cols=95 Identities=9% Similarity=-0.112 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 92 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
+..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|...|++..+..+. +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 444555566666666666666666654322 5556666666666666666666666666654322 45556666666666
Q ss_pred cCChhHHHHHHHHHHhC
Q 020976 93 NRKYKLGLEILSAMKRK 109 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~ 109 (319)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665543
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.1e-06 Score=72.89 Aligned_cols=199 Identities=9% Similarity=-0.049 Sum_probs=142.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC
Q 020976 51 LIKGLCKAGRLRTARWILKELGDSGHAPNA----------------ITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TF 113 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 113 (319)
-...+.+.|++++|.+.|.++.+....... .++..+...|...|++++|.+.+..+...-- .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 355678899999999999999886433221 1377889999999999999999988765310 11
Q ss_pred Cc----ccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-
Q 020976 114 DG----FGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GF- 181 (319)
Q Consensus 114 ~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 181 (319)
+. .+.+.+-..+...|+++.+..+++..... +..+ -..++..+...+...|++++|..++.+.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12222333344568899999999887652 2222 2456788999999999999999999988643 11
Q ss_pred -CC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhc--CCC-C-C--hhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976 182 -EC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GFD-S-N--LEAYNCIVDRLGKDGKIDHAINVFESMEVK 249 (319)
Q Consensus 182 -~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (319)
.+ ...++..++..|...|++++|..+++..... .+. | . ...+..+...+...|++++|...|.+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 2357888899999999999999999987653 111 1 1 245566677788899999999998876654
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=7.7e-07 Score=63.06 Aligned_cols=99 Identities=10% Similarity=-0.071 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
+...+..+...+...|++++|.+.|++..+.... +...|..+..++...|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556677777777777777777777777765322 56677777777777777777777777777664 445666777777
Q ss_pred HHHHcCchHHHHHHHHHHHhC
Q 020976 124 AFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (319)
++...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777664
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.63 E-value=4.4e-07 Score=61.25 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-------cccH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-------GFGY 118 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~ 118 (319)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..... +.+ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHH
Confidence 445555556666666666666666665542 2245555555556666666666666666555432 111 3344
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 119 CTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
..+..++...|++++|...|++...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444555555555555555555544
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3e-06 Score=58.54 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
+..+..++...|++++|+..+++..... +.+...+..+..++...|++++|...|++..+
T Consensus 68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 68 HRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344444444444444444443321 11233344444444444444444444444443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.60 E-value=6.1e-08 Score=81.28 Aligned_cols=125 Identities=11% Similarity=0.009 Sum_probs=99.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 91 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.|..+...+.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|.+.+++..+... .+..++..+..++.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3444555677899999999999999886433 688999999999999999999999999998743 36788999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH--HHHcCchHHHHHHHH
Q 020976 92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA--FVKIGRLKEATDYME 139 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 139 (319)
..|++++|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998874 4455566666666 788899999999988
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.59 E-value=1.4e-06 Score=72.75 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--------------AITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
....|..+...+.+.|++++|...|++..+...... ..+|..+..++.+.|++++|+..+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345556666666666666666666666655321111 356666667777777777777777776665
Q ss_pred CCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHH
Q 020976 110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170 (319)
Q Consensus 110 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (319)
. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4455666666677777777777777777766642 234455666666666666666554
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=9.4e-07 Score=59.10 Aligned_cols=93 Identities=10% Similarity=-0.026 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 020976 49 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 128 (319)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (319)
..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..+++..+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444555555555555555555553221 45555555555555555555555555555543 33444555555555555
Q ss_pred CchHHHHHHHHHHHh
Q 020976 129 GRLKEATDYMEQMVT 143 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~ 143 (319)
|++++|+..+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=3.7e-06 Score=56.64 Aligned_cols=94 Identities=12% Similarity=0.002 Sum_probs=59.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhhHHHHH
Q 020976 14 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL---VTYNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIM 87 (319)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 87 (319)
..+...+...|++++|++.|+.+.+.... +. ..+..+..++...|++++|...|+++...... + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34555666777777777777776664322 22 35666666777777777777777776664322 2 44566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 020976 88 KCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.++...|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6667777777777777766655
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.54 E-value=8.3e-07 Score=62.33 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEME 177 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
+..+...+...|++++|...+++.... +.+ .....+..+...+...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 333444444555555555555444321 100 012234444445555555555555555443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=1.5e-06 Score=72.82 Aligned_cols=122 Identities=16% Similarity=0.082 Sum_probs=85.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
.+...+.+.|++++|++.+++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33445667788888888888887764 4457778888888888888888888888888763 345677778888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHhHHHHHHH--HhccCChhHHHHHHH
Q 020976 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDG--LCKAGNIKGARLHLE 209 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 209 (319)
++++|.+.+++..+.... +...+..+..+ +.+.|++++|...++
T Consensus 89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888775432 33344444444 667788888888777
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.53 E-value=1.2e-06 Score=61.56 Aligned_cols=137 Identities=14% Similarity=0.033 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CChhhHH
Q 020976 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SNLEAYN 224 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 224 (319)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++...+.... ++...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-- 87 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV-- 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH--
Confidence 34556666666677777777777665543111 01 124455555555666666666655554432100 00000
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHc----CCcc-CHHHHHHHHHHHHhc
Q 020976 225 CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRI-LKSAQKAVVDGLRHS 299 (319)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~ 299 (319)
....+..+...+...|++++|...+++..+. +..+ ....+..+...+...
T Consensus 88 -------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 88 -------------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp -------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 1223444555555566666666655555432 1111 234566667777777
Q ss_pred CCHHHHHHHHHHHHh
Q 020976 300 GCRREAKKIQSKIRM 314 (319)
Q Consensus 300 g~~~~a~~~~~~~~~ 314 (319)
|++++|.+.+++..+
T Consensus 143 g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888777776554
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.51 E-value=1.5e-05 Score=68.19 Aligned_cols=175 Identities=10% Similarity=-0.065 Sum_probs=137.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR----------LRTARWILKELGDSGHAPNAITYTTIMKCCFRN 93 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (319)
...++|++.++.+...++. +..+|+.--.++...|+ ++++.+.++.+.....+ +..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3456889999999987554 67778777777777776 89999999999987554 788898888888888
Q ss_pred C--ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc-------
Q 020976 94 R--KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE------- 163 (319)
Q Consensus 94 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 163 (319)
+ +++++++.++++.+.. +-+..+|+.-...+.+.| .++++++.++++.+.. +-+..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 6799999999999886 667888888888888888 8899999999988864 44778888877776663
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976 164 -------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 203 (319)
Q Consensus 164 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
+.++++++.+++.....+. +...|...-..+...+..++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999888876544 66677777777766666443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.51 E-value=1.8e-06 Score=69.83 Aligned_cols=97 Identities=11% Similarity=-0.047 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKH---------------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 76 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 76 (319)
.|..+...+.+.|++++|++.|++..+. ..+.+..+|..+..+|.+.|++++|.+.+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3566666777777777777777776651 0011234444555555555555555555555554321
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 77 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.+...+..+..++...|++++|++.|++..+.
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 13444455555555555555555555554444
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=8.2e-06 Score=54.89 Aligned_cols=26 Identities=23% Similarity=0.061 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
+..+..++...|++++|...|+++.+
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=4.8e-07 Score=60.12 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=56.5
Q ss_pred hcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 020976 22 KNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 99 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (319)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3567777777777777653 1224556677777777777777777777777765433 566677777777777777777
Q ss_pred HHHHHHHHhC
Q 020976 100 LEILSAMKRK 109 (319)
Q Consensus 100 ~~~~~~~~~~ 109 (319)
+..+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.46 E-value=3.1e-06 Score=70.63 Aligned_cols=151 Identities=9% Similarity=-0.019 Sum_probs=100.6
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------cccHHHH
Q 020976 57 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD---------------GFGYCTV 121 (319)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l 121 (319)
..+++++|.+.|+....... -....+..+...+.+.|++++|+..|++..+.. +.+ ...|..+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHH
Confidence 33455555555443332211 146677777888888888888888888877652 222 3677778
Q ss_pred HHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCCh
Q 020976 122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201 (319)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
..++.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++..+..+. +...+..+..++...++.
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887753 345677778888888888888888888888775432 445667777777777777
Q ss_pred hHHHH-HHHHH
Q 020976 202 KGARL-HLEYM 211 (319)
Q Consensus 202 ~~a~~-~~~~~ 211 (319)
+++.. .+..|
T Consensus 402 ~~a~~~~~~~~ 412 (457)
T 1kt0_A 402 NERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 66643 34433
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.44 E-value=4.9e-06 Score=58.73 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=68.6
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKH--------GF---------VPELVTYNILIKGLCKAGRLRTARWILKEL 71 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 71 (319)
....+......+.+.|++++|+..|+...+. .. +.+...|..+..+|.+.|++++|...+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888889999999999999887664 00 112345666667777777777777777777
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 72 GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 72 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
....+ .+...|..+..++...|++++|...|++....
T Consensus 90 l~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 66432 25666667777777777777777777776655
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.41 E-value=5.1e-06 Score=57.54 Aligned_cols=95 Identities=7% Similarity=-0.133 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFV-P-----EL-----VTYNILIKGLCKAGRLRTARWILKELGDS-----GH 76 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 76 (319)
+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++..+. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 445555566667777777777766653222 0 11 14555555555555555555555555442 00
Q ss_pred CC-ChhhH----HHHHHHHHhcCChhHHHHHHHHHH
Q 020976 77 AP-NAITY----TTIMKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 77 ~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
.| +...| .....++...|++++|+..|++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 12 22334 444444444444444444444443
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.40 E-value=1.6e-06 Score=72.50 Aligned_cols=123 Identities=11% Similarity=-0.038 Sum_probs=90.0
Q ss_pred HHhccCChhHHHHHHHHHHhcC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----------CchhHH
Q 020976 194 GLCKAGNIKGARLHLEYMNKIG---FDS----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYS 255 (319)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~ 255 (319)
.+...|++++|..++++..+.. +.+ ...+++.+..+|...|++++|..++++.... ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557788999988888776541 112 2467788888889999999988888765422 335688
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc-----CCc-c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976 256 SMVHNLCKAKRLPSASKLLLSCLKS-----GVR-I-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 316 (319)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (319)
.|...|...|++++|..++++.++- |.. | ...+...+..++...|.+++|...+.+++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999988887642 322 2 33455666677888999999999999988754
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=3.7e-06 Score=68.05 Aligned_cols=137 Identities=10% Similarity=-0.069 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (319)
..+..+...+.+.|++++|.+.|++..+.- ++. ..... .+...... +.+...|..+..++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHH-HHHHHHHHHHHHHH
Confidence 346667777777888888888877776510 000 00000 00000010 22334455555555
Q ss_pred HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHH
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (319)
.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555532 223445555555555666666666666555554322 334444444444444444444
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.39 E-value=1.7e-06 Score=57.44 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976 94 RKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555555432 12233344444455555555555555555554432 2234444445555555555555555
Q ss_pred HHHHHHH
Q 020976 172 LLDEMEK 178 (319)
Q Consensus 172 ~~~~~~~ 178 (319)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.37 E-value=1.9e-06 Score=68.84 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=68.5
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
..+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+ . ..+|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 44556666677777777777777776653 233221 11112222222111 0 12566677777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHH-HHhcCCHHHH
Q 020976 91 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL-YCKEGKLEAA 169 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 169 (319)
.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..... +.+...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777654 4456667777777777777777777777776542 2233444444444 2334556667
Q ss_pred HHHHHHHHHc
Q 020976 170 YLLLDEMEKQ 179 (319)
Q Consensus 170 ~~~~~~~~~~ 179 (319)
...|..+...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777776654
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=9.3e-06 Score=57.25 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
..|..+..++.+.|++++|+..+++..... +.+...|..+..++...|++++|...|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 344455555555555555555555555432 223445555555555555555555555555544
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.29 E-value=5.8e-06 Score=66.07 Aligned_cols=93 Identities=14% Similarity=0.031 Sum_probs=40.2
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHH-HH
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN-LC 262 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~-~~ 262 (319)
.|..+..++.+.|++++|...++...+.. +.+...+..+..+|...|++++|...|++.... +...+..+... ..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 55666666667777777777777666653 344566666666777777777777777666543 33334443333 22
Q ss_pred ccCChhHHHHHHHHHHHc
Q 020976 263 KAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~ 280 (319)
..+..+++...|.++...
T Consensus 311 ~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 234445556666665543
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=9.4e-06 Score=56.23 Aligned_cols=109 Identities=13% Similarity=-0.029 Sum_probs=58.6
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCC
Q 020976 187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKR 266 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (319)
.+......+...|++++|...|++.++.. |+...- ..-+. ...+...|..+..++...|+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~--------~a~~~----------~~~~a~a~~n~g~al~~Lgr 72 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE--------EAFDH----------AGFDAFCHAGLAEALAGLRS 72 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT--------SCCCH----------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch--------hhhhh----------ccchHHHHHHHHHHHHHCCC
Confidence 34455555666777777777777766642 220000 00000 00011255666666666666
Q ss_pred hhHHHHHHHHHHHc-----CCcc-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976 267 LPSASKLLLSCLKS-----GVRI-LKSAQ----KAVVDGLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 267 ~~~a~~~~~~~~~~-----~~~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (319)
+++|+..+++.++. .+.| +...| .....++...|++++|+..|++..+.
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666553 1133 34555 66667777777777777777765443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.24 E-value=3.8e-05 Score=52.47 Aligned_cols=111 Identities=9% Similarity=-0.085 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHH
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLG 99 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 99 (319)
+++++|++.|++..+.|. |+.. +...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345566666666655542 1222 4444545555555666666655542 44555555555555 4555666
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCC
Q 020976 100 LEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDG 145 (319)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 145 (319)
.++|++..+.| ++..+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66665555544 33444555555555 455555555555555543
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=0.00013 Score=62.53 Aligned_cols=177 Identities=8% Similarity=-0.024 Sum_probs=137.3
Q ss_pred hcCC-hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976 57 KAGR-LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK----------YKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125 (319)
Q Consensus 57 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (319)
+.|. -++|.+.++++....+. +..+|+.--.++...++ ++++++.++.+.+.. +-+..+|..-...+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 46789999999986544 56778777666766666 899999999999876 66778888888888
Q ss_pred HHcC--chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc----
Q 020976 126 VKIG--RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG-KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA---- 198 (319)
Q Consensus 126 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 198 (319)
.+.+ ++++++..++++.+.. +-+..+|+.-..++.+.| .++++++.++++.+..+. +...|+.....+...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 8889 6699999999999874 447888988888888888 899999999999887655 667777666665542
Q ss_pred ----------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 020976 199 ----------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 238 (319)
Q Consensus 199 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (319)
+.++++.+.+....... +-+...|...-..+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688888898888765 5567788877777777666433
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.24 E-value=6.6e-06 Score=68.77 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=43.0
Q ss_pred hhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCC-CC-ChhhHHHH
Q 020976 21 CKNRYTDNALRMFRGLQKH---GFVP----ELVTYNILIKGLCKAGRLRTARWILKELGD-----SGH-AP-NAITYTTI 86 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l 86 (319)
..+|++++|+.++++.++. -+.| ...+++.|..+|...|++++|..++++..+ .|. .| ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666666554431 0111 134555566666666666666655555433 111 11 13345555
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 020976 87 MKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~ 107 (319)
...|...|++++|+.++++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555443
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.23 E-value=4.8e-05 Score=51.99 Aligned_cols=110 Identities=12% Similarity=-0.007 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHH
Q 020976 60 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEAT 135 (319)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 135 (319)
++++|.++|++..+.|. |+.. +...|...+.+++|.+.|++..+.| ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45566666666655541 2222 4444444455555666666655554 34445555555555 45556666
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 020976 136 DYMEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQG 180 (319)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 180 (319)
.+|++..+.| +...+..+...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666555543 34444555555555 555555555555555543
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.8e-05 Score=51.54 Aligned_cols=92 Identities=12% Similarity=-0.053 Sum_probs=62.9
Q ss_pred cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-------h
Q 020976 8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-------A 80 (319)
Q Consensus 8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~ 80 (319)
++...|..+...+...|++++|++.|++..+... .+...+..+..++...|++++|.+.+++..... |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 4566777788888888888888888888777533 367777788888888888888888888887643 33 3
Q ss_pred hhHHHHHHHHHhcCChhHHHHH
Q 020976 81 ITYTTIMKCCFRNRKYKLGLEI 102 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~ 102 (319)
..+..+..++...|+.+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhH
Confidence 3444455555555555444433
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=5.3e-05 Score=47.19 Aligned_cols=79 Identities=13% Similarity=0.036 Sum_probs=45.2
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...+..+...+...|++++|+..|++..+... .+...+..+...+...|++++|...+++.....+ .+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 44556666666666666666666666655432 2455566666666666666666666666655422 134444444444
Q ss_pred H
Q 020976 90 C 90 (319)
Q Consensus 90 ~ 90 (319)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.05 E-value=3.4e-05 Score=50.72 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976 29 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
|++.|++..+... .+...+..+...+...|++++|...|++...... .+...|..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444322 2344455555555555555555555555544321 134444444455555555555555554444
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=2.3e-05 Score=50.96 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
+...+..+...+...|++++|.+.|++...... .+...+..+..++...|++++|++.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455666677777777777777777777766432 25666777777777777777777777777655
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.03 E-value=6.1e-05 Score=46.89 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (319)
...+..+...+...|++++|...|++...... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44555566666666666666666666655422 245556666666666666666666666665543 2233444444433
Q ss_pred H
Q 020976 125 F 125 (319)
Q Consensus 125 ~ 125 (319)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.02 E-value=6.2e-05 Score=49.43 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=66.8
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHH
Q 020976 62 RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141 (319)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 141 (319)
+.|.+.|++..+... .+...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357778888877543 367888889999999999999999999988775 556778888889999999999999999988
Q ss_pred HhC
Q 020976 142 VTD 144 (319)
Q Consensus 142 ~~~ 144 (319)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.98 E-value=3.1e-05 Score=53.51 Aligned_cols=87 Identities=7% Similarity=-0.103 Sum_probs=57.1
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh----------HHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 21 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR----------TARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
.+.+.+++|++.++...+.... +...|..+..++...++++ +|+..|++..+..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3456678888888887776443 7777777777777776653 777777777665332 456666677766
Q ss_pred HhcC-----------ChhHHHHHHHHHHhC
Q 020976 91 FRNR-----------KYKLGLEILSAMKRK 109 (319)
Q Consensus 91 ~~~~-----------~~~~a~~~~~~~~~~ 109 (319)
...| ++++|++.|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6553 566666666666554
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.93 E-value=4e-05 Score=52.95 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=57.1
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976 57 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY----------KLGLEILSAMKRKGYTFDGFGYCTVIAAFV 126 (319)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (319)
+.+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|++..+.. +-+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 445577777777777765433 677777777777766654 36666666666654 334556666666666
Q ss_pred HcC-----------chHHHHHHHHHHHhCCCccChhhH
Q 020976 127 KIG-----------RLKEATDYMEQMVTDGVQLDIVSY 153 (319)
Q Consensus 127 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
..| ++++|++.|++..+. .|+...|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 553 566666666666553 3444444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=8.4e-05 Score=47.49 Aligned_cols=64 Identities=19% Similarity=-0.009 Sum_probs=44.4
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556667777777777777777777777665432 456677777777777777777777776654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.76 E-value=0.00016 Score=46.13 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 106 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (319)
...+..+...+...|++++|...|++..+.... +...|..+..++...|++++|.+.+++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444444433211 2334444444444444444444444443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.63 E-value=0.0016 Score=51.65 Aligned_cols=73 Identities=10% Similarity=-0.056 Sum_probs=40.4
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH
Q 020976 148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 224 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (319)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+...|++++|...+++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 344555555555555566666666666666553 45555555555555666666666666665554 34444443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.60 E-value=0.0034 Score=49.88 Aligned_cols=63 Identities=8% Similarity=-0.064 Sum_probs=34.7
Q ss_pred cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (319)
+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44455555444444566666666666665553 4544555555555556666666666655443
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.56 E-value=0.021 Score=51.22 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=93.9
Q ss_pred HHHhcCChhHHHH-HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH
Q 020976 54 GLCKAGRLRTARW-ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 132 (319)
Q Consensus 54 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 132 (319)
.....+++++|.+ ++..+ |+......++..+.+.|.++.|+++.+. + ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHH
Confidence 3445677777766 44211 1122336666777777887777765521 1 11133456678888
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHH
Q 020976 133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212 (319)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+....+-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 888775432 3567888888888888888888888887642 3344445555677776666555555
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
..| -++....+|.+.|++++|.+++.+
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 433 223344456667777777766654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.49 E-value=0.00085 Score=55.22 Aligned_cols=61 Identities=8% Similarity=-0.119 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCC-CCC-hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGD-----SGH-APN-AITYTTIMKCCFRNRKYKLGLEILSAM 106 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (319)
.+++.|..+|...|++++|..++++... .|. .|+ ..+++.|...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444555555555555555555544432 111 111 233444444444555555554444443
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.46 E-value=0.00075 Score=55.58 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=56.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCC---CCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCccc
Q 020976 52 IKGLCKAGRLRTARWILKELGDSG---HAP----NAITYTTIMKCCFRNRKYKLGLEILSAMKRK-----G--YTFDGFG 117 (319)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~ 117 (319)
+..+.+.|++++|..++++..+.. +.| ...+++.+..+|...|++++|+.++++.... | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334456677777777777765421 112 2456677777777777777777777766531 1 1122345
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66677777777777777777776654
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.44 E-value=0.0004 Score=57.14 Aligned_cols=82 Identities=11% Similarity=-0.072 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhhccC-----------CchhHHHHHHHHHccCChhHHHHHHHHHHHc-----CC-cc-CHHHHHHHHH
Q 020976 233 DGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-----GV-RI-LKSAQKAVVD 294 (319)
Q Consensus 233 ~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~ 294 (319)
.|++++|..++++.... ...+++.+...|...|++++|..++++.+.- |. .| ...+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777666654321 2245677777777777777777777776542 21 22 3356777777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 020976 295 GLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~ 314 (319)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 78888888888877776543
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.44 E-value=0.00072 Score=55.69 Aligned_cols=60 Identities=12% Similarity=-0.107 Sum_probs=29.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHc-----C-Ccc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 253 TYSSMVHNLCKAKRLPSASKLLLSCLKS-----G-VRI-LKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
+++.+...|...|++++|+.++++.+.- | ..| ...+++.+...|...|++++|..++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455555555555555555555544431 1 111 2234555555555555555555555544
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.32 E-value=0.0017 Score=40.94 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIV-SYNTLINLYCKEGKLEAAYLLLDEMEKQ 179 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
.+.+.|++++|...+++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444455555555555544431 12233 4444444555555555555555554443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.23 E-value=0.0053 Score=38.56 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=47.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELV-TYNILIKGLCKAGRLRTARWILKELGDSG 75 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (319)
....+.+.|++++|++.|+...+.... +.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677889999999999998876432 566 88888888999999999999999988753
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.22 E-value=0.0045 Score=38.66 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=31.3
Q ss_pred chHhHHHHHHHHhhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976 9 CTATFNIMLNGLCKNRY---TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
|+..+..+..++...++ .++|..++++..+.... ++.....+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444433322 45555555555544322 4444455555555555555555555555543
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.21 E-value=1.9e-06 Score=69.85 Aligned_cols=148 Identities=7% Similarity=0.006 Sum_probs=85.1
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
+..|..|..+..+.+++.+|++-|-+. -|+..|..++.+..+.|.+++-.+.+...++..- ++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 345666777777777777776654211 2556677777777778888887777766665422 44444567777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC--------------------CCccC
Q 020976 90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD--------------------GVQLD 149 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~ 149 (319)
|++.++..+..+++. .|+......+..-|...|.++.|.-+|..+..- .-.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777777655433331 344444555555555555555554444333110 00124
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHH
Q 020976 150 IVSYNTLINLYCKEGKLEAAYLL 172 (319)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
+.||..+-.+|...+.+.-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHh
Confidence 55666666666666655554433
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.011 Score=36.87 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 020976 43 PELVTYNILIKGLCKAGR---LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (319)
.|+..+..+..++...++ .++|..++++..+.... ++.....+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666666654443 56777777777665332 55666666667777777777777777776653
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.15 E-value=0.023 Score=37.63 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=95.6
Q ss_pred HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 020976 153 YNTLINL--YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230 (319)
Q Consensus 153 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
...|+.+ +.-.|..++..++..+..... +..-++.+|--....-+-+-..++++.+-+. .|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi---------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL---------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------
Confidence 3444444 344677888888887777642 3344555555444555555555555544332 221
Q ss_pred HhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976 231 GKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310 (319)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 310 (319)
..+|++......+-.+. .+.......+..+...|+-++..+++..++. +.+|++.....+..+|.+.|+..+|.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 22344444444443332 2455566777888889999999999888654 457788899999999999999999999999
Q ss_pred HHHhhhcc
Q 020976 311 KIRMAKIS 318 (319)
Q Consensus 311 ~~~~~~i~ 318 (319)
+.=+.|+.
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 98877763
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.034 Score=49.90 Aligned_cols=102 Identities=10% Similarity=0.047 Sum_probs=65.1
Q ss_pred HHHHhhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976 17 LNGLCKNRYTDNALR-MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
.......+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+. . ..-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCC
Confidence 344556788888877 54221 1122336677777788888888765521 1 111233456788
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHH
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (319)
+++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 88887775432 356678888888888888888888887764
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.98 E-value=0.011 Score=37.66 Aligned_cols=65 Identities=9% Similarity=-0.004 Sum_probs=36.6
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHG------FVPELVTYNILIKGLCKAGRLRTARWILKELGD 73 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
+...+-.+...+.+.|+++.|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44445556666666666666666666654420 112345555666666666666666666666654
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.98 E-value=0.0065 Score=38.85 Aligned_cols=63 Identities=11% Similarity=-0.069 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----------CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 280 (319)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (319)
.+..-+..+...+...|++..|...|+..... ...++..+..++.+.|+++.|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455667888888889999888888765432 3456778888888888888888888888775
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.95 E-value=0.01 Score=45.29 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhCCCCCC---cccHHHHHHHHHHc-----CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc-CCHH
Q 020976 97 KLGLEILSAMKRKGYTFD---GFGYCTVIAAFVKI-----GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE-GKLE 167 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 167 (319)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444444443 222 33455555555552 56666666666655542111244455555555553 5566
Q ss_pred HHHHHHHHHHHcCCC
Q 020976 168 AAYLLLDEMEKQGFE 182 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~ 182 (319)
++.+.+++.....+.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666554443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.90 E-value=0.011 Score=40.48 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHH
Q 020976 25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG---RLRTARWILKELGDSGHAP--NAITYTTIMKCCFRNRKYKLG 99 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 99 (319)
....+.+-|.+..+.|. ++..+.-.+..++++.+ +++++..+|+++.+.. .| +...+-.+.-++.+.+++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34455666666555544 56777777777777776 5557777777777653 23 345555666677778888888
Q ss_pred HHHHHHHHhC
Q 020976 100 LEILSAMKRK 109 (319)
Q Consensus 100 ~~~~~~~~~~ 109 (319)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888777766
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.083 Score=37.10 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=42.5
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH
Q 020976 56 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 135 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 135 (319)
...|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+.. .+..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCHHHHH
Confidence 3445555555544433 134445555555555555555555554432 1233333444444444444
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976 136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173 (319)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (319)
++-+.....| -++....++...|+++++.++|
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 3333333322 1233333444455555555554
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.088 Score=36.99 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=87.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976 157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (319)
.....+.|+++.|.++.+++ -+...|..+.......|+++-|+..|..... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34556789999999887765 3678899999999999999999988876543 44555566778887
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 237 DHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
+...++-+.....+ -++.....+...|+++++.++|.+. |-.|.. +-.....|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE--DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 77666655433221 3455556677789999999988653 322221 11223367777888877654
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.68 E-value=0.044 Score=37.11 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=49.8
Q ss_pred chHhHHHHHHHHhhcCCh------HHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HHhcCChhHHHHHHHHHhhCC
Q 020976 9 CTATFNIMLNGLCKNRYT------DNALRMFRGLQKHGFVPELV-TYNILIKG------LCKAGRLRTARWILKELGDSG 75 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 75 (319)
|.++|-..+...-+.|+. ++..++|++.... ++|+.. .|...+.. +...+++++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 556666666666666666 6666666666554 444321 01100000 112255556666665554431
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 020976 76 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110 (319)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (319)
-.- ...|......-.+.|+...|.+++.+....+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 111 4444444444555555666666665555544
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.65 E-value=0.027 Score=38.47 Aligned_cols=65 Identities=9% Similarity=0.016 Sum_probs=26.7
Q ss_pred CCcccHHHHHHHHHHcC---chHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 113 FDGFGYCTVIAAFVKIG---RLKEATDYMEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 113 ~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
++..+.-.+..++++++ +.++++.+|++..+.. .| ....+..+.-++.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33344444444444444 3334444444444432 11 122233333344444444444444444444
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.38 E-value=0.12 Score=35.01 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=48.8
Q ss_pred ChhhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCcc-cHHHHHHH------HHHcCchHHHHHHHHHHHhCC
Q 020976 79 NAITYTTIMKCCFRNRKY------KLGLEILSAMKRKGYTFDGF-GYCTVIAA------FVKIGRLKEATDYMEQMVTDG 145 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~ 145 (319)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+.. +...+|.++|.++|+.+....
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444555555555545555 5555555555543 243321 11111111 112356666666666665432
Q ss_pred CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 020976 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182 (319)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (319)
-.. ...|....+.-.+.|+...|.+++......+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 122 344444444455566666666666666665544
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.33 E-value=0.057 Score=41.31 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHhCCCccC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc-CCh
Q 020976 131 LKEATDYMEQMVTDGVQLD---IVSYNTLINLYCK-----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-GNI 201 (319)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 201 (319)
...|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777877774 344 5678888888888 499999999999999875543466777788888874 899
Q ss_pred hHHHHHHHHHHhcCCC--CChhhHH
Q 020976 202 KGARLHLEYMNKIGFD--SNLEAYN 224 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~--~~~~~~~ 224 (319)
+++.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999999887544 5444333
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.07 E-value=0.048 Score=35.86 Aligned_cols=84 Identities=13% Similarity=0.037 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHH
Q 020976 25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT---ARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGL 100 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 100 (319)
.+..+.+-|......|. |+..+--.+..++++.++... ++.+++.+...+.+ -.....-.+.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444444444333 455554455555555554443 55555555554210 12333334444555666666666
Q ss_pred HHHHHHHhC
Q 020976 101 EILSAMKRK 109 (319)
Q Consensus 101 ~~~~~~~~~ 109 (319)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665554
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.84 E-value=2.1e-05 Score=63.94 Aligned_cols=242 Identities=12% Similarity=0.077 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976 44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (319)
.+..|..|..+....+.+.+|++-|-+. -|+..|..++.+..+.|.+++-.+++....+. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567888999988888888887655322 26778899999999999999999988777665 345556678999
Q ss_pred HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCC
Q 020976 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--------------------GFEC 183 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~ 183 (319)
+|++.++..+..+++. .|+..-...+..-|...|.++.|.-+|..+... .-.-
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998766544332 355555666677777777777776666543211 1123
Q ss_pred cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHH
Q 020976 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 260 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~ 260 (319)
+..||..+-.+|...+.+.-|...--.++- ...-...++..|...|.+++.+.+++.-... ....|+.|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 667898888999999888877655444442 2233455777888999999999988876533 66788888888
Q ss_pred HHccCChhHHHHHHHHHHHc-CCc------cCHHHHHHHHHHHHhcCCHHHHH
Q 020976 261 LCKAKRLPSASKLLLSCLKS-GVR------ILKSAQKAVVDGLRHSGCRREAK 306 (319)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~ 306 (319)
|++- ++++..+.++....+ +++ -....|.-++-.|.+-.++|.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 8765 566666665543322 111 02234556666666666666553
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.54 E-value=0.13 Score=33.81 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=9.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 020976 158 NLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~ 178 (319)
-++.+.|++++|.+.++.+.+
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444444443
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.085 Score=46.45 Aligned_cols=126 Identities=16% Similarity=0.116 Sum_probs=80.9
Q ss_pred HHHHHHHhhcCC-hHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCC-hhHHHHHHHHHhhC------CCCC-Ch--
Q 020976 14 NIMLNGLCKNRY-TDNALRMFRGLQKHGFVPELVTY--NILIKGLCKAGR-LRTARWILKELGDS------GHAP-NA-- 80 (319)
Q Consensus 14 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~-- 80 (319)
..++..+...++ .+.|+.+|+++.... |...++ ..++..+...++ --+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555666666 588999999998763 333332 233333323222 22455555444321 1111 11
Q ss_pred --------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHH
Q 020976 81 --------ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 142 (319)
Q Consensus 81 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (319)
...+.-...+...|+++-|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223455677899999999999998774 5567899999999999999999999988773
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.51 E-value=0.3 Score=32.47 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=92.0
Q ss_pred hHHHHHHH--HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 12 TFNIMLNG--LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 12 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
+...||.+ ..-.|..++..++..+.... .+..-||.++--....-+-+-..++++..-.. .|..
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis-------- 72 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD-------- 72 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH--------
Confidence 34445544 44467777777777776653 25556666666666666666666666655431 1211
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976 90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
..|+.......+-.+ ..+....+..+..+...|..++..+++..+... .+|++...-.+..+|.+.|+..++
T Consensus 73 --~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 73 --KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp --GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred --hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhH
Confidence 233333333333322 124455666677777888888888888875443 466777777888888888888888
Q ss_pred HHHHHHHHHcCCC
Q 020976 170 YLLLDEMEKQGFE 182 (319)
Q Consensus 170 ~~~~~~~~~~~~~ 182 (319)
.+++.+.-+.|++
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 8888888877764
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=1.1 Score=37.10 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=39.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHHcCchHHHHHHHHHHHh----CCCccC--hhhH
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFD-----GFGYCTVIAAFVKIGRLKEATDYMEQMVT----DGVQLD--IVSY 153 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~ 153 (319)
.|...+...|++.+|.+++..+...-...+ ...+...++.|...+++..|..++.++.. ...+|+ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 344445555555555555555542211111 12333344455555555555555554421 111111 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 020976 154 NTLINLYCKEGKLEAAYLLLDEM 176 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
...+..+...+++.+|...|.++
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444555555555555444
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.13 E-value=1.2 Score=40.37 Aligned_cols=50 Identities=14% Similarity=-0.031 Sum_probs=23.3
Q ss_pred ccCChhHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 197 KAGNIKGARLHLEYMNKIGFDSNLEAY--NCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
..|+.+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 4556666666655555421 1222111 122334555566555555555544
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=1.4 Score=36.44 Aligned_cols=186 Identities=12% Similarity=0.052 Sum_probs=83.8
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH----hcC
Q 020976 24 RYTDNALRMFRGLQKH-----GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF----RNR 94 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 94 (319)
|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+....-. .......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 5677777666555431 22234556677777777777777776666655442211 1222223332221 122
Q ss_pred ChhHHHHHHHHHHh--CCCCCCc--------ccHHHHHHHHHHcCchHHHHHHHHHHHhC--CCccC---hhhHHHHHHH
Q 020976 95 KYKLGLEILSAMKR--KGYTFDG--------FGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQLD---IVSYNTLINL 159 (319)
Q Consensus 95 ~~~~a~~~~~~~~~--~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~ 159 (319)
..+...+ ..+.. ..+.... .....|...+...|++.+|..++.++... |..+. ...+...++.
T Consensus 109 ~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2111111 11111 0111111 01133455555666666666666665432 11111 2234445555
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHH
Q 020976 160 YCKEGKLEAAYLLLDEMEK----QGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMN 212 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666655431 111111 1233444444555555655555554443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.37 Score=42.56 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
...|...|+++-|..+-++....- +.+-.+|..|..+|...|+++.|+-.+..++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344556777888887777777653 4445777888888888888888877777664
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.67 E-value=2.5 Score=38.41 Aligned_cols=270 Identities=11% Similarity=-0.041 Sum_probs=139.9
Q ss_pred HhhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-------CCChhhHHHHHHHH
Q 020976 20 LCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH-------APNAITYTTIMKCC 90 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 90 (319)
....|+.++++.+++.....+ -.+....=..+.-+.+..|..+++..++.......- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777777766544321 111222333344455566666677777766554211 01111122333333
Q ss_pred HhcCC-hhHHHHHHHHHHhCCCCCCcccHH--HHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976 91 FRNRK-YKLGLEILSAMKRKGYTFDGFGYC--TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 167 (319)
Q Consensus 91 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
+-.|. -+++.+.+..+.... .+...... .+...+.-.|+.+....++..+.+.. ..+..-+..+.-++...|+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 33343 245566666555432 11111112 22333445677777777777776642 112222233333445788999
Q ss_pred HHHHHHHHHHHcCCCCcHHhH--HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 168 AAYLLLDEMEKQGFECDKYTH--TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
.+..+++.+... ..|....- ..+.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.+++..
T Consensus 542 ~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 542 LADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 998888888764 22222222 234556788899888888999888642 22333333333344456776667777765
Q ss_pred hccC-CchhHHH--HHHHHHccCCh-hHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976 246 MEVK-DSFTYSS--MVHNLCKAKRL-PSASKLLLSCLKSGVRILKSAQKAVVDGL 296 (319)
Q Consensus 246 ~~~~-~~~~~~~--l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (319)
+... ++.+-.. +.-+....|.. .++..++..+.. .+|..+-...+.++
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 5433 4444333 33333444443 578888888864 23444443333333
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.47 E-value=0.74 Score=31.83 Aligned_cols=129 Identities=6% Similarity=-0.041 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhC-CCccCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC-cHHh
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDI-------VSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FEC-DKYT 187 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~ 187 (319)
+-.-+..+...+.++.|+-+.+.+... +..|+. .++..+..++...+++..|...|++.++.. .-+ +..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334455666677777777666665442 112221 134556667777777777777777754321 111 1111
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHH
Q 020976 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVH 259 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~ 259 (319)
...+. ....... ......+.+.--.+..||.+.+++++|+.+++.++.. ++.+-..|.+
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence 11110 0000000 0011233445555777888888888888888887644 5554444443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.43 E-value=0.28 Score=39.76 Aligned_cols=77 Identities=13% Similarity=0.090 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcHHhHHHHH
Q 020976 118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGFECDKYTHTILI 192 (319)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 192 (319)
...++..+...|+++++...+..+... -+.+...+..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455677778889999998888888765 355778889999999999999999998887653 58888877654443
Q ss_pred HHH
Q 020976 193 DGL 195 (319)
Q Consensus 193 ~~~ 195 (319)
...
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.42 E-value=0.25 Score=40.05 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCcccHH
Q 020976 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-----KGYTFDGFGYC 119 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 119 (319)
.+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|++.+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 355667788888999999998888887653 34777899999999999999999999888754 48888876543
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.41 E-value=3.4 Score=38.89 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHH
Q 020976 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 192 (319)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (319)
-|..++..+.+.+.++.+.++-....+...+.+ ...|..+.+++...|++++|...+..+.....+ ......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 456666666666777766666655544311111 124666677777777777777777666544322 33455555
Q ss_pred HHHhccCCh
Q 020976 193 DGLCKAGNI 201 (319)
Q Consensus 193 ~~~~~~~~~ 201 (319)
...|..|..
T Consensus 979 ~~lce~~~~ 987 (1139)
T 4fhn_B 979 NQLTKQGKI 987 (1139)
T ss_dssp HHHHHHCCH
T ss_pred HHHHhCCCh
Confidence 555555443
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.69 E-value=4.7 Score=37.95 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=114.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc-----------------
Q 020976 85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ----------------- 147 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 147 (319)
.++..+...+..+.+.++.... +.++...-.+..++...|++++|..+|.+.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 3444555566666555443322 233333345566788899999999999765321 10
Q ss_pred ------cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHhccCChhHHHHHHHHHHhcCCC
Q 020976 148 ------LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK----YTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 217 (319)
Q Consensus 148 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (319)
.-..-|..++..+.+.+.++.+.++-....+....-+. ..|..+.+.+...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-- 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-- 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--
Confidence 01123677888888999999999888777654322121 257888899999999999999888776543
Q ss_pred CChhhHHHHHHHHHhcCCHHHH------------HHHHHhh-c-----cCCchhHHHHHHHHHccCChhHHHHH-HHHHH
Q 020976 218 SNLEAYNCIVDRLGKDGKIDHA------------INVFESM-E-----VKDSFTYSSMVHNLCKAKRLPSASKL-LLSCL 278 (319)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a------------~~~~~~~-~-----~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~ 278 (319)
.-...+..++...+..|..+.- .+++..- . ...+.-|..|=..+...|++.+|..+ |+.+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 2345677777777766655443 3333211 1 11223355555556677887666554 55544
Q ss_pred H
Q 020976 279 K 279 (319)
Q Consensus 279 ~ 279 (319)
+
T Consensus 1049 R 1049 (1139)
T 4fhn_B 1049 R 1049 (1139)
T ss_dssp H
T ss_pred H
Confidence 3
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.64 E-value=0.76 Score=28.66 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
+..+-++.+....+.|++......+++|-+.+++..|.++++.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455554455555555555555555555555555555555433
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.46 E-value=0.82 Score=28.51 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++..- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 556778888888888899999999999999999999999999999998642 333456766654
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.09 E-value=0.72 Score=31.91 Aligned_cols=69 Identities=13% Similarity=-0.019 Sum_probs=38.9
Q ss_pred CCCCcchHh--HHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 020976 4 GDLTPCTAT--FNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPE-------LVTYNILIKGLCKAGRLRTARWILKELG 72 (319)
Q Consensus 4 ~g~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (319)
.|+-|--.. +-.-+..+...|.++.|+-+.+.+... +..|+ ..++..+..++...|++.+|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344453333 444566677778888888777765432 11222 1255667777778888888888888754
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.13 E-value=1.7 Score=28.78 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976 63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI 122 (319)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (319)
+..+-++.+....+.|++......+++|-+.+|+..|.++++-++.+. .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 444455555555555666666666666666666666666666555442 22233454444
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.02 E-value=1.8 Score=28.71 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976 25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 88 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+.-+..+-++.+...++.|++....+.+++|.+.+|+..|.++|+-++.. ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 33455666667777788899999999999999999999999999999864 2334556776654
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.85 E-value=1.9 Score=28.59 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 43 PELVTYNILIKGLCKAGR---LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
|+..+--.+..++++..+ ..+++.+++++.+.+..-....+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444444444445555443 2345555555555432112344444555566666666666666666554
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.63 E-value=2 Score=28.46 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=33.2
Q ss_pred CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976 77 APNAITYTTIMKCCFRNRK---YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.|+..+--.+..++++..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|+++.|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3455554455555555443 3345555555554431112233334444555566666666666655553
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.93 E-value=3.4 Score=33.98 Aligned_cols=61 Identities=16% Similarity=0.021 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976 47 TYNILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
+...+...|.+.|+++.|.+.|.++... +..--...+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555555666666666666655542 112223445555555555566666555555543
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.84 E-value=3.4 Score=33.98 Aligned_cols=97 Identities=8% Similarity=-0.062 Sum_probs=67.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCChhhHHHH--
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKH--GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG-HAPNAITYTTI-- 86 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l-- 86 (319)
++..+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+++....- -.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4567889999999999999999999874 333446788889999999999999999999886421 11222222211
Q ss_pred --HHHHHhcCChhHHHHHHHHHHh
Q 020976 87 --MKCCFRNRKYKLGLEILSAMKR 108 (319)
Q Consensus 87 --~~~~~~~~~~~~a~~~~~~~~~ 108 (319)
...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1123345677777777665543
No 257
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=90.78 E-value=3.8 Score=32.59 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCC---chhHHHHHHHHHccCC--hhHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 020976 224 NCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKR--LPSASKLLLSCLKSGVRILKSAQKAVVDG 295 (319)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (319)
..++.-|...|+.++|.+.++++..+. ..+...+..++-+.++ .+....++..+...|+-+.......+.+.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 456666667777777777777776552 1223333334433322 24456666666666655444443333333
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.73 E-value=1.8 Score=26.93 Aligned_cols=80 Identities=11% Similarity=0.001 Sum_probs=54.4
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
...++|..+-+-+...+. ...+-..-+..+.+.|++++|..+.+....||...|.++-. .+.|-.+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356788888777776542 22222233445678899999999998888888888876644 45677777777776766
Q ss_pred HcCC
Q 020976 279 KSGV 282 (319)
Q Consensus 279 ~~~~ 282 (319)
..|-
T Consensus 97 ~sg~ 100 (116)
T 2p58_C 97 RSQD 100 (116)
T ss_dssp TCCC
T ss_pred hCCC
Confidence 6543
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.48 E-value=2.1 Score=26.62 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (319)
.+.++|..+-+.+...+. ....--+-+..+...|++++|..+.+.+. .||...|..|. -.+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 356777777776666532 11111222334566777777776654443 56777666653 34666666666666
Q ss_pred HHHHhCC
Q 020976 104 SAMKRKG 110 (319)
Q Consensus 104 ~~~~~~~ 110 (319)
..+...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666665
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.27 E-value=2.2 Score=26.56 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (319)
.+.++|..+-+.+...+. ....--+-+..+...|++++|..+.+.+. .||...|..|. -.+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 356677777666665532 11111222334556777777776665543 56776666653 34566666666666
Q ss_pred HHHHhCC
Q 020976 104 SAMKRKG 110 (319)
Q Consensus 104 ~~~~~~~ 110 (319)
..+...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6666655
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.76 E-value=1.7 Score=26.98 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=54.0
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
...++|..+-+-+...+. ...+-..-+..+.+.|++++|..+.+....||...|.++-. .+.|-.+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778877777776542 22222223445678899999998888888778888776643 46677777777776776
Q ss_pred HcCC
Q 020976 279 KSGV 282 (319)
Q Consensus 279 ~~~~ 282 (319)
..|-
T Consensus 96 ~sg~ 99 (115)
T 2uwj_G 96 GSSD 99 (115)
T ss_dssp TCSS
T ss_pred hCCC
Confidence 6543
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.32 E-value=7.6 Score=31.43 Aligned_cols=167 Identities=9% Similarity=-0.035 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCC---ChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccH-
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDS-GHAP---NAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGY- 118 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~- 118 (319)
......|...|.+.|+.++..+++.....- +.-| .......++..+.... ..+.-.++..+..+.. .-+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456778999999999999999998887541 1111 2344566777776643 3444444444444321 1122333
Q ss_pred -----HHHHHHHHHcCchHHHHHHHHHHHhC--CCccC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHH
Q 020976 119 -----CTVIAAFVKIGRLKEATDYMEQMVTD--GVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECDKY 186 (319)
Q Consensus 119 -----~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 186 (319)
..++..|...|++.+|.+++.++... ..... ...+-.-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 15677888889999998888887763 11111 233555667788888888888888777532 2223333
Q ss_pred hHH----HHHHHHh-ccCChhHHHHHHHHHH
Q 020976 187 THT----ILIDGLC-KAGNIKGARLHLEYMN 212 (319)
Q Consensus 187 ~~~----~l~~~~~-~~~~~~~a~~~~~~~~ 212 (319)
... .-...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 221 1222344 6788888877776654
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=88.94 E-value=6 Score=29.77 Aligned_cols=209 Identities=15% Similarity=0.100 Sum_probs=100.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHHH
Q 020976 15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELV---TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI---TYTTIMK 88 (319)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~ 88 (319)
..+...++.|+.+....+ .+.|..++.. .-.+.+...+..|+.+-+. .+.+.|..++.. -.+ .+.
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t-~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGAT-PFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCC-HHH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCC-HHH
Confidence 455667778887655544 4445443322 1123444555677765444 444455544422 222 233
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhh------------HH
Q 020976 89 CCFRNRKYKLGLEILSAMKRKGYTFDGFG--YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS------------YN 154 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~ 154 (319)
..+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+. .+.+.|..++... -.
T Consensus 78 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 78 LAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK----FLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHH----HHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHH----HHHHhCCCcccccccHHHHHhhccCCC
Confidence 344556654 4445555554444221 112344555667655443 4444443333210 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhh--HHHHHHH
Q 020976 155 TLINLYCKEGKLEAAYLLLDEMEKQGFECD---KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA--YNCIVDR 229 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 229 (319)
..+...+..|+.+-+..+++. .|..++ ....+.+. ..+..+.......+.+.+.+.|..++... -...+..
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~ 225 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 233344456665544443332 133332 22222232 23345665556677777777776554321 1233445
Q ss_pred HHhcCCHHHHHHHHH
Q 020976 230 LGKDGKIDHAINVFE 244 (319)
Q Consensus 230 ~~~~~~~~~a~~~~~ 244 (319)
.+..|+.+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 566788877777776
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.67 E-value=4 Score=27.41 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 42 VPELVTYNILIKGLCKAGR---LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.|+..+--.+..++++..+ ..+++.+++++...+..-.....-.+.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3555555555556666554 3456666666665432223444445555666777777777777666665
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.08 E-value=2.7 Score=31.73 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=42.9
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 74 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
....+.|++++|++....-.+..+. |...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4567788888888888777766443 7777777888888888888888888777664
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.81 E-value=2.4 Score=32.06 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 178 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
.+.|++++++.....-++.. |.|...-..+++.+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555544444432 33444444555555555555555555554444
No 267
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=83.88 E-value=13 Score=28.80 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCC--hhHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976 223 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR--LPSASKLLLSCLKSGVRILKSAQKAVVDGL 296 (319)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (319)
...++.-|...|+.++|.+.++++..| ...+...+..++-+.++ .+....++..+.+.|+-+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 356788888999999999999999876 22333444444444333 355667888888777665554444443333
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=83.25 E-value=16 Score=29.13 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=16.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHH
Q 020976 14 NIMLNGLCKNRYTDNALRMFRGLQ 37 (319)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~ 37 (319)
..++.-|...++.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 455666667777777777766654
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.65 E-value=15 Score=28.56 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=67.6
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCcHHhHHHHHHHH
Q 020976 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL----LLDEMEKQGFECDKYTHTILIDGL 195 (319)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
++..-|.+.+++++|++++..-. ..+.+.|+...|.+ +++...+.+.+++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33444555666666666554322 12233344443333 334444556666666666666665
Q ss_pred hccCChh-HHHHHHHHHH----hcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHcc
Q 020976 196 CKAGNIK-GARLHLEYMN----KIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA 264 (319)
Q Consensus 196 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (319)
......+ .-.++++.+. +.| ...++.....+...|.+.|++.+|...|-.-...++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 4432111 1223333332 222 1235567777888888888888888877633323555665555555443
No 270
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=82.27 E-value=8.5 Score=26.24 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=16.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHH
Q 020976 188 HTILIDGLCKAGNIKGARLHLEYMN 212 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
...++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4556666666677777776666654
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.26 E-value=16 Score=28.67 Aligned_cols=190 Identities=14% Similarity=0.039 Sum_probs=104.4
Q ss_pred ChhHHHHHHHHHHhCCCC----CCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHH
Q 020976 95 KYKLGLEILSAMKRKGYT----FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 170 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (319)
.+++.++-++.-.+.|-- --...|.++..-|.+.+++++|++++..- ...+.+.|+...+.
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHH
Confidence 344444444444444410 01134455556666667777766665432 23455667776655
Q ss_pred HHH----HHHHHcCCCCcHHhHHHHHHHHhccCChh-HHHHHHHHHH----hcC--CCCChhhHHHHHHHHHhcCCHHHH
Q 020976 171 LLL----DEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLHLEYMN----KIG--FDSNLEAYNCIVDRLGKDGKIDHA 239 (319)
Q Consensus 171 ~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a 239 (319)
++- +-..+.++++|......++..+.....-+ .-..+.+.++ +.| ...++.....+...|.+.+++.+|
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 554 55556788889888888888877665322 1222333332 222 234556677788888888999888
Q ss_pred HHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976 240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (319)
...|-.-..+.+..+..++..+...+...+ ++...-. .+--|.-.++...|..+++...+
T Consensus 156 e~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 156 EKHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 888742121123566555544444332111 1222222 23345567788888777666543
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=81.69 E-value=14 Score=27.60 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=56.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHH
Q 020976 50 ILIKGLCKAGRLRTARWILKELGDSGHAPNAI---TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG--YCTVIAA 124 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~ 124 (319)
..+...++.|+.+....++ +.|..++.. .-...+...+..|+.+ +++.+.+.|..++... -.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 3455567788877665555 444444322 1123444455667654 4445555565444321 1233445
Q ss_pred HHHcCchHHHHHHHHHHHhCCCccCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 020976 125 FVKIGRLKEATDYMEQMVTDGVQLDI---VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (319)
.+..|+.+-+ +.+.+.|..++. ..++. +...+..|+.+ +++.+.+.|..++
T Consensus 79 A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~ 132 (285)
T 1wdy_A 79 AAIAGSVKLL----KLFLSKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVN 132 (285)
T ss_dssp HHHHTCHHHH----HHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHcCCHHHH----HHHHHcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcc
Confidence 5556665544 444445544332 12222 33344556654 3444455555443
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.61 E-value=26 Score=30.44 Aligned_cols=111 Identities=10% Similarity=-0.038 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHh----HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 020976 165 KLEAAYLLLDEMEKQGFECDKYT----HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (319)
+.+.|...+....+.... +... ...+.......+...++...+...... .++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 567777777776543221 2222 222222333334234444455544332 233333444555555678888888
Q ss_pred HHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976 241 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 241 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
..|..+... .....--+..++...|+.++|..+|+.+.
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888777654 22223334556666777777777776654
No 274
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=81.35 E-value=7.5 Score=28.31 Aligned_cols=16 Identities=6% Similarity=-0.024 Sum_probs=7.3
Q ss_pred HhcCCHHHHHHHHHHH
Q 020976 297 RHSGCRREAKKIQSKI 312 (319)
Q Consensus 297 ~~~g~~~~a~~~~~~~ 312 (319)
.+.|+.+-+..+++.-
T Consensus 218 ~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 218 KQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHTTCHHHHHHHHHHC
T ss_pred HHcCcHHHHHHHHHhh
Confidence 4445554444444433
No 275
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=81.21 E-value=9.4 Score=25.15 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=13.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHHH
Q 020976 189 TILIDGLCKAGNIKGARLHLEYMN 212 (319)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445555555566666655555543
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.50 E-value=14 Score=26.59 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHHHhCCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 020976 129 GRLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (319)
+...++..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 335677778877777655433 344666777777788888888888887777666643
No 277
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=79.94 E-value=12 Score=26.26 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=7.5
Q ss_pred HHHHHHHHhcCCCCC
Q 020976 205 RLHLEYMNKIGFDSN 219 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~ 219 (319)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555554443
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.37 E-value=23 Score=28.62 Aligned_cols=231 Identities=8% Similarity=0.023 Sum_probs=129.6
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhH--
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVP---ELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITY-- 83 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 83 (319)
.+...|...|.+.|+.++..+++...... +.-| .......++..+.... ..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45567888999999999999998876442 1112 2344567777776643 344444444444431111 22233
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHHcCchHHHHHHHHHHHhC--CCccChhh
Q 020976 84 ----TTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-----GFGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQLDIVS 152 (319)
Q Consensus 84 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 152 (319)
..++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2578889999999999999988876421222 223445566788899999999999877653 22233332
Q ss_pred HHH----HHHHHH-hcCCHHHHHHHHHHHHHc-C-C-CC---cHHhHHHHHHHHhccCChhHHHHHHH-HH-HhcCCCCC
Q 020976 153 YNT----LINLYC-KEGKLEAAYLLLDEMEKQ-G-F-EC---DKYTHTILIDGLCKAGNIKGARLHLE-YM-NKIGFDSN 219 (319)
Q Consensus 153 ~~~----l~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~-~~~~~~~~ 219 (319)
-.. -...+. ..+++..|...|-+..+. . . .| +...|..+.... .++..+...++. .. ... ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhcccccccc-CCcc
Confidence 221 122345 689999998888776421 1 1 11 112333222222 233333333222 11 111 2355
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 220 LEAYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
...+..++.+| ..+++.....++...
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 55566666654 456666666665544
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=79.07 E-value=16 Score=26.50 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=6.0
Q ss_pred HHHHhcCChhHHH
Q 020976 53 KGLCKAGRLRTAR 65 (319)
Q Consensus 53 ~~~~~~~~~~~a~ 65 (319)
...+..|+.+-+.
T Consensus 47 ~~A~~~~~~~~v~ 59 (240)
T 3eu9_A 47 HWAAINNRIDLVK 59 (240)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHhCCHHHHH
Confidence 3344555554333
No 280
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.01 E-value=13 Score=24.96 Aligned_cols=67 Identities=15% Similarity=0.029 Sum_probs=31.2
Q ss_pred cChhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976 148 LDIVSYNTLINLYCKEGKL---EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 214 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
|+..+--....++.+..+. .+++.+++++.+.+..-.....-.+.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444433444444444432 245555555554332222233334444555556666666665555553
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.49 E-value=17 Score=25.96 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=24.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
+..+-...+.++...|..+....+...+..+++.+-...+.++...+. .++...+..+.+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 333333444444444443222222222333344444444444444443 334444444443
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=77.19 E-value=8.1 Score=28.76 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=11.4
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCC
Q 020976 55 LCKAGRLRTARWILKELGDSGHAP 78 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~ 78 (319)
.++.|+.+....+++.+...|..+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~ 35 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRL 35 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCc
Confidence 334555555555555444443333
No 283
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=76.34 E-value=5.8 Score=29.55 Aligned_cols=57 Identities=21% Similarity=0.085 Sum_probs=36.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH--hcCChhHHHHHHHHHh
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVT-------YNILIKGLC--KAGRLRTARWILKELG 72 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~ 72 (319)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 45566778999998888888877766555332 233433332 5677777776666543
No 284
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.30 E-value=26 Score=27.55 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=99.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHH----HHHHHhCCCccChhhHHHHH
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY----MEQMVTDGVQLDIVSYNTLI 157 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 157 (319)
+|.++..-|.+.+++++|++++..- ...+.+.|+...+-++ ++-+.+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455555555666666665554321 2345567777665554 45666678899998888888
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----cC--CCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 020976 158 NLYCKEGKLE-AAYLLLDEMEK----QG--FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230 (319)
Q Consensus 158 ~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
..+.....-+ .-..+++.+.+ .| ..-|+.....+...|.+.+++.+|+..|- .|-.++...+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 8887765422 22334444432 22 34467778888999999999999988772 23334446665555555
Q ss_pred HhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976 231 GKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 279 (319)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (319)
...+...++ +... ...+-.|...++...|..+++...+
T Consensus 178 ~~~~~~~e~----------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTA----------PLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGH----------HHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccH----------HHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444432211 1111 1223345567788888887766554
No 285
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=76.03 E-value=5.9 Score=23.45 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=36.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 35 GLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3556666655444 34445554443 4566777777777666556666666666666666643
No 286
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=75.43 E-value=5.5 Score=26.50 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=36.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 36 LQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 556666655433 33444555555 5667777888777776666666666666667766654
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=75.25 E-value=23 Score=26.27 Aligned_cols=88 Identities=7% Similarity=-0.007 Sum_probs=38.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKH--GFVP----ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 89 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 345666677777777776665431 1111 011112222222222222233333333321 2344444455555
Q ss_pred HHhcCChhHHHHHHHHH
Q 020976 90 CFRNRKYKLGLEILSAM 106 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~ 106 (319)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 55666666665555443
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=74.94 E-value=23 Score=26.23 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=42.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhh--CCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976 51 LIKGLCKAGRLRTARWILKELGD--SGHAP----NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 124 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (319)
-+..+....++++|.+++++..+ .+.++ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 45566777888888888777654 11221 111222223322222222233333334422 2334444455556
Q ss_pred HHHcCchHHHHHHHHHH
Q 020976 125 FVKIGRLKEATDYMEQM 141 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~ 141 (319)
+.+.|+.++|..+|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66666666666665443
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.86 E-value=28 Score=27.12 Aligned_cols=147 Identities=12% Similarity=0.010 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHH----HHHHHHhcCCCCChhhHHHHH
Q 020976 152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL----HLEYMNKIGFDSNLEAYNCIV 227 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 227 (319)
.|.++..-|.+.+++++|.+++..-.. .+.+.|+...+-+ +++...+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 355566677788888888888755321 1222344333322 333444445666666666666
Q ss_pred HHHHhcCC--------HHHHHHHHHhhcc---CCchhHHHHHHHHHccCChhHHHHHHH----------------HHHHc
Q 020976 228 DRLGKDGK--------IDHAINVFESMEV---KDSFTYSSMVHNLCKAKRLPSASKLLL----------------SCLKS 280 (319)
Q Consensus 228 ~~~~~~~~--------~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------~~~~~ 280 (319)
..+..... +..|..+-.+... -++.....+...|.+.+++.+|...|- ...+.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence 55544221 2334444333322 277888888888888888888877552 11111
Q ss_pred --CCccCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 281 --GVRILKSAQ-KAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 281 --~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
|.+-+...| ...+-.|.-.|+...|..+++...
T Consensus 180 ~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 180 DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 322222222 112223456778888888777654
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.21 E-value=22 Score=25.57 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHH
Q 020976 27 DNALRMFRGLQKHGFVPELVTYNILIKGLCK--AGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEIL 103 (319)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 103 (319)
+++.+.|..... .+-|+.-...-+...-. .+....+.++|..|...|+-.. +..|......+...|++.+|.++|
T Consensus 61 Erc~~~F~~~~r--YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 61 ERCLIYIQDMET--YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHTTCGG--GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccccc--ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444332 34455444333332222 3446688888888877665433 455677777777888888888888
Q ss_pred HHHHhCCCCC
Q 020976 104 SAMKRKGYTF 113 (319)
Q Consensus 104 ~~~~~~~~~~ 113 (319)
+.-.+.+-.|
T Consensus 139 ~~GI~~~A~P 148 (202)
T 3esl_A 139 ELGAENNCRP 148 (202)
T ss_dssp HHHHHTTCBS
T ss_pred HHHHHcCCcc
Confidence 8877776555
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=72.03 E-value=17 Score=25.55 Aligned_cols=159 Identities=10% Similarity=0.003 Sum_probs=66.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhc
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI---TYTTIMKCCFRN 93 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 93 (319)
+...+..|+.+....++..-...--..+..-.+ .+...+..|+.+-+.. +.+.|..++.. -.+. +...+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~-l~~A~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEIAKA----LIDRGADINLQNSISDSP-YLYAGAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHH----HHHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHH----HHHcCCCCCCCCCCCCCH-HHHHHHc
Confidence 344456777776666654321000011222222 3333446676554444 34445444422 2222 3334455
Q ss_pred CChhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976 94 RKYKLGLEILSAMKRKGYTFDGFG--YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 171 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
|+.+-+..+++. .+..++... -.+.+...+..|+.+-+..+++.-...--..+..-.+.+..+.........-.+
T Consensus 83 ~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 83 GRTEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp TCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred CCHHHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 666544444432 221221111 112344455667765555554432111001122223333333333222333455
Q ss_pred HHHHHHHcCCCCc
Q 020976 172 LLDEMEKQGFECD 184 (319)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (319)
+.+.+.+.|..++
T Consensus 160 ~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 160 IVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHCCCCCC
Confidence 6666666666554
No 292
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=71.74 E-value=7.1 Score=26.53 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=37.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 35 GLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3556666655433 23444444444 5667777777777766666666666666667766654
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=71.16 E-value=22 Score=24.24 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 020976 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK--LEAAYLLLDEMEKQGFE 182 (319)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 182 (319)
..++.-|...|+.++|...++++..... ....+...+..++-+.++ .+.+..++..+...++-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4455666666666666666666542111 112223333333333222 33455555555555444
No 294
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=71.15 E-value=9 Score=25.81 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=36.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 35 GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4556677655433 33444444555 667777888777776666666666666667766643
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=70.58 E-value=35 Score=26.47 Aligned_cols=94 Identities=18% Similarity=0.128 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC--hhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN--IKGARLHLEYMNKIGFDSNLEAYNCIVDRL 230 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
...++.-|...|+.++|...++++...... .......+..+.-+.++ .+.+..++..+.+.|+-+.......+...+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456777788888888888888887532111 23344445555544332 455667777777666555444444443333
Q ss_pred HhcCC----HHHHHHHHHhhc
Q 020976 231 GKDGK----IDHAINVFESME 247 (319)
Q Consensus 231 ~~~~~----~~~a~~~~~~~~ 247 (319)
....+ ...|..++.++.
T Consensus 248 ~~l~Dl~lDiP~A~~~la~~v 268 (307)
T 2zu6_B 248 NEIPDINLDVPHSYSVLERFV 268 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHH
Confidence 33332 334555555444
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.84 E-value=34 Score=25.93 Aligned_cols=177 Identities=12% Similarity=0.039 Sum_probs=79.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHHcC
Q 020976 52 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG--YCTVIAAFVKIG 129 (319)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~ 129 (319)
+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 3344566776655554443 3333332222334445566665543 34444554443221 122344555667
Q ss_pred chHHHHHHHHHHHhCCCccChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH-hHHHHHHHHhccCChhHHH
Q 020976 130 RLKEATDYMEQMVTDGVQLDIV---SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY-THTILIDGLCKAGNIKGAR 205 (319)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 205 (319)
+.+-+..+++. |..++.. -+...+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 76555444443 3333221 112334444556665433 3444444433111 2233444445677777666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
.+++.-...+. .+....+..+...+..|+.+-+.-+++.
T Consensus 179 ~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 179 LLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp HHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred HHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 66655333221 1212222223344556666555555443
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=66.66 E-value=27 Score=23.61 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=38.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 34 RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+.+.+.|++++. .=..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345667776443 33445556666666778888888887766666666666666666666643
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.00 E-value=33 Score=24.38 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 020976 43 PELVTYNILIKGLCKAGR 60 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~ 60 (319)
++...-...+..+.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444445555555554
No 299
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=65.95 E-value=27 Score=23.40 Aligned_cols=62 Identities=15% Similarity=0.018 Sum_probs=39.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976 34 RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 96 (319)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34566777755433 344555555666777888888887776666666666666666666543
No 300
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=65.86 E-value=31 Score=24.12 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 287 SAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
..++.+...|...|+.++|...+..
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 3566677788889999999888754
No 301
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=65.38 E-value=26 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (319)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555544433333333333344444433
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.89 E-value=37 Score=24.55 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=9.3
Q ss_pred HhcCChhHHHHHHHHHhhCC
Q 020976 56 CKAGRLRTARWILKELGDSG 75 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~ 75 (319)
+..|+.+.+..+++.+...+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455555544444444333
No 303
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=64.41 E-value=22 Score=21.91 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 020976 29 ALRMFRGLQKHGFVPELVTYNILIKGLCKAG 59 (319)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 59 (319)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4555555555566666666666666555554
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=64.39 E-value=25 Score=23.62 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (319)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555554443334434333344444444
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.01 E-value=45 Score=25.23 Aligned_cols=202 Identities=13% Similarity=0.084 Sum_probs=97.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhc
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI---TYTTIMKCCFRN 93 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 93 (319)
+...+..|+.+-+.. +.+.|..++...-.+.+...+..|+.+-+..++ +.|..++.. -++. +...+..
T Consensus 35 L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~-L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTA-LYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcH-HHHHHHc
Confidence 445556777654444 444454443322233444556677766554444 445544432 2233 3344566
Q ss_pred CChhHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHHcCchHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHH
Q 020976 94 RKYKLGLEILSAMKRKGYTFDGF---GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAA 169 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 169 (319)
|+.+-+.-+ .+.|..++.. -+.+.+...+..|+.+-+.. +.+.|..+ +...-...+...+..|+.+-+
T Consensus 106 g~~~~v~~L----l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLF----VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHH----HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHH----HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 766544433 3445444322 22455666667777654443 44444322 221233445556677887766
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976 170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (319)
.-+++.-..-... +..-.+..+...+..|+. ++.+.+.+.|..++.... .-...|+.+-+.-+++.
T Consensus 178 ~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 178 ILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHc
Confidence 6666554332211 111112212223345554 345556677766665442 12345666555555543
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=63.88 E-value=39 Score=24.52 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=9.8
Q ss_pred HHHhcCChhHHHHHHHHHhh
Q 020976 54 GLCKAGRLRTARWILKELGD 73 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~ 73 (319)
.|.+.|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34445555555555555443
No 307
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.56 E-value=36 Score=23.94 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=34.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 020976 218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 297 (319)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (319)
++..+-...+.++.+.++.+....+...+..+++.+-...+.++...|. +++...+..+... ++...-...+.++.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLE 194 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3444444445555555543333333333333455555555555555554 3455555555432 34444444444443
Q ss_pred h
Q 020976 298 H 298 (319)
Q Consensus 298 ~ 298 (319)
+
T Consensus 195 ~ 195 (201)
T 3ltj_A 195 T 195 (201)
T ss_dssp H
T ss_pred H
Confidence 3
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.34 E-value=40 Score=24.38 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=45.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHH
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVT--YNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT--YTTIMKCCF 91 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 91 (319)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHH
Confidence 45566778999888888887776665544221 11234445566776544 34444555444321 112333444
Q ss_pred hcCChhHHHHHHHH
Q 020976 92 RNRKYKLGLEILSA 105 (319)
Q Consensus 92 ~~~~~~~a~~~~~~ 105 (319)
..|+.+-+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 56666555444443
No 309
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=62.89 E-value=54 Score=25.82 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCC
Q 020976 13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG--RLRTARWILKELGDSGHA 77 (319)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 77 (319)
...++.-|...|+.++|.+.++++......| ..... ++......+ ..+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~-~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRH-GVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHH-HHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4567888889999999999888875321111 11222 222222222 245566677777765543
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=62.00 E-value=68 Score=26.64 Aligned_cols=110 Identities=13% Similarity=0.143 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976 24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (319)
.+.+-|.++ ..+.|++--...|..-.+.+...|++++|.++--.... |+-.+..|.+.+-..-...|+..-.+.+|
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 455555554 33445554555666667777778888888777655543 33446666655554444445566666677
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHH
Q 020976 104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138 (319)
Q Consensus 104 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 138 (319)
..+.+.| ..+..--.-+.+.-...|+.+-..+++
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHH
Confidence 7666665 444433333444444555544444443
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.90 E-value=34 Score=22.88 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=26.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCC
Q 020976 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (319)
..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34444444445555666666666665555555555555566655554
No 312
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=60.61 E-value=31 Score=23.30 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC
Q 020976 96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (319)
.-.|.++++.+.+.+...+..|.-.-|..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555544433333333333344444444
No 313
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=60.54 E-value=38 Score=23.26 Aligned_cols=47 Identities=6% Similarity=0.101 Sum_probs=23.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHc--CCccCHHHHHHHHHHHHhcCC
Q 020976 255 SSMVHNLCKAKRLPSASKLLLSCLKS--GVRILKSAQKAVVDGLRHSGC 301 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 301 (319)
..++..+...++.-.|.++++.+.+. +...+..|...-++.+.+.|-
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444444555555666555554 444444444444455555543
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.68 E-value=26 Score=25.68 Aligned_cols=82 Identities=9% Similarity=0.068 Sum_probs=56.3
Q ss_pred HHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHH
Q 020976 29 ALRMFRGLQKH-----GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEI 102 (319)
Q Consensus 29 a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 102 (319)
-..++++..+. ..+-|..-...-+. |+.. .+...++|..|...|+-.. ...|......+...|++.+|.++
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 172 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEV 172 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45666665442 23445554444443 3332 3678899999998777544 55678888888899999999999
Q ss_pred HHHHHhCCCCC
Q 020976 103 LSAMKRKGYTF 113 (319)
Q Consensus 103 ~~~~~~~~~~~ 113 (319)
|+.-++.+-.|
T Consensus 173 y~~Gi~~~A~P 183 (223)
T 4aez_C 173 YQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHTCBS
T ss_pred HHHHHHcCCcc
Confidence 99988876555
No 315
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=59.45 E-value=20 Score=23.83 Aligned_cols=57 Identities=16% Similarity=0.042 Sum_probs=28.9
Q ss_pred CCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 020976 3 CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60 (319)
Q Consensus 3 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 60 (319)
+.|++++.. =..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~~g~r~T~q-R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 7 PVKGRATRQ-RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp ---CHHHHH-HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCccCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344444332 233445555555566666666666665555555555555555555554
No 316
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=58.18 E-value=23 Score=23.22 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=24.4
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 020976 16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60 (319)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 60 (319)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444455556666666666655544555555555555555543
No 317
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.12 E-value=45 Score=22.70 Aligned_cols=70 Identities=7% Similarity=-0.106 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 020976 42 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (319)
+-|+.-...-+... . ..+.+.++|..|...|+-.. +..|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 65 knD~RyLklWl~ya-~--~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 65 HNDPRFISYCLKFA-E--YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp TTCHHHHHHHHHHH-T--TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHH-H--hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44555444444322 2 23458889999988776544 45677788888889999999999998887765553
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.10 E-value=34 Score=25.04 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 020976 132 KEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183 (319)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (319)
+....+|..|...|+-.. ...|......+...|++.+|.++|..-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355566666666654333 2345556666666777777777777766665555
No 319
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=55.88 E-value=54 Score=23.52 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=19.4
Q ss_pred cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
-.|++.|+-++-+|.+.| .|....-..++.+...-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 356666666666666666 444444444444444433
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=55.66 E-value=26 Score=24.07 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHHhHHHHHHHHhccCC
Q 020976 153 YNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECDKYTHTILIDGLCKAGN 200 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 200 (319)
-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344445555555555555555555554 444444444444444444443
No 321
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.46 E-value=46 Score=22.64 Aligned_cols=71 Identities=8% Similarity=-0.000 Sum_probs=50.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh
Q 020976 77 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (319)
.-|+.-....+.. +.. .+.+.++|..|...|+-.. ...|......+-..|++.+|..+|+.-++.+-.|-.
T Consensus 65 knD~RyLklWl~y-a~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 65 HNDPRFISYCLKF-AEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp TTCHHHHHHHHHH-HTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCCHHHHHHHHHH-HHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3355544444442 222 3448899999998875443 456778888889999999999999999998777644
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.83 E-value=1.3e+02 Score=27.76 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhc
Q 020976 225 CIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
.+..+|...|++++|.++|++..
T Consensus 845 v~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 845 LKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 35556666677777777776543
No 323
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.43 E-value=30 Score=20.21 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=26.7
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC
Q 020976 71 LGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 129 (319)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (319)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544333 23333333332 34445556666655543344444444555555444
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=54.17 E-value=47 Score=22.38 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=27.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCC
Q 020976 255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301 (319)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (319)
..++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34444555555556677777776666555566555555566666554
No 325
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=54.00 E-value=15 Score=20.21 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 63 TARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
+|.+.|.+|++..-.+...+|...++..
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 3444444443322222333444444433
No 326
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=53.69 E-value=58 Score=23.28 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=20.0
Q ss_pred cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 164 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
-.|++.|+-++-+|++.|-.|....-..++.+....|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3566666666666666655555444444444444433
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.82 E-value=53 Score=22.58 Aligned_cols=49 Identities=4% Similarity=-0.172 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHHHHcCCcc--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHH
Q 020976 265 KRLPSASKLLLSCLKSGVRI--LKSAQKAVVD-G-----LRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~ 313 (319)
|++=+|-++|+..-.....+ ....|..+|+ . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666655443333 3444555555 1 133566666666665543
No 328
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=52.20 E-value=35 Score=22.65 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=32.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCH
Q 020976 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302 (319)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (319)
.++..+...++.-.|.++++.+.+.+...+..|...-++.+.+.|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555555566677888888887776666776766667777776653
No 329
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=52.15 E-value=38 Score=22.14 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=33.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCH
Q 020976 256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR 302 (319)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (319)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555666778888888888776666777777777777777654
No 330
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=51.93 E-value=66 Score=23.39 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhhCCCCCCh--hhHH-----HHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 61 LRTARWILKELGDSGHAPNA--ITYT-----TIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~--~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.+.|+.+|+.+.+.-..++. .... ..+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 46777777777664221111 1111 2233566777777777777777654
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=51.88 E-value=32 Score=21.16 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHhhccCCchhHHHHHHHHHccCChh
Q 020976 234 GKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLP 268 (319)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (319)
...+.|.++++.+..+.+..|..++.++...|...
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 45667777777777766777777777766555433
No 332
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.85 E-value=25 Score=18.82 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 020976 270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC--RREAKKIQSKIR 313 (319)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~ 313 (319)
-.+.++.+++.|+.++ ....++.+.|. .+.|.+++.+|.
T Consensus 9 n~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 9 NRQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp CHHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 3445667777777653 33456667777 999999988874
No 333
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=50.82 E-value=61 Score=22.68 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 020976 43 PELVTYNILIKGLCKAGR 60 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~ 60 (319)
+|...-...+..+...++
T Consensus 26 ~~~~vr~~A~~~L~~~~~ 43 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGD 43 (201)
T ss_dssp SCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444555555554
No 334
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.27 E-value=60 Score=22.42 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCC-cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh
Q 020976 99 GLEILSAMKRKGYTFD-GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 150 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (319)
..++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5566777766654332 334555666666677777777777777776555543
No 335
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=50.05 E-value=62 Score=22.56 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=10.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC
Q 020976 91 FRNRKYKLGLEILSAMKRKGYTFD 114 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~ 114 (319)
+..|+.+.-.++.+.+.+.|..++
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCcchHHHHHHHHHHCCCCCC
Confidence 334444434444555555554443
No 336
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.23 E-value=62 Score=22.33 Aligned_cols=71 Identities=10% Similarity=-0.045 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 020976 42 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 115 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (319)
+-|+.-...-+...-.. +...++|..|...|+-.. +..|......+...|++.+|.++|..-++.+-.|-.
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 44555555444322222 447778998988776544 456777778888899999999999988887766643
No 337
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.83 E-value=54 Score=21.46 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 020976 119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK--LEAAYLLLDEMEKQGFE 182 (319)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 182 (319)
..++.-|...|+.++|...++++..... ....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4556666666777777777776642111 112223333344444322 34556666666655544
No 338
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.64 E-value=48 Score=26.14 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 020976 83 YTTIMKCCFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888777764
No 339
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.62 E-value=1.1e+02 Score=25.16 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC-----hhHHHHHHHHHHhcCC
Q 020976 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN-----IKGARLHLEYMNKIGF 216 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 216 (319)
+.++.+.|+.++..|.+.|..|....-..+..+...-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 356778888888888887777666555555555555553 2234555555555564
No 340
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=48.10 E-value=69 Score=23.44 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=15.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCC
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVP 43 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (319)
+...++.|+.+....+++.+.+.|..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555666666666666655555443
No 341
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=47.29 E-value=1.1e+02 Score=26.24 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHH
Q 020976 60 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 134 (319)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 134 (319)
+.........++..+-+--+..-...++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|++.|+++.+
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 33444455555554322234455666677777777777777777766554322 22334 445566677666554
No 342
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=47.24 E-value=81 Score=23.07 Aligned_cols=26 Identities=4% Similarity=-0.112 Sum_probs=14.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC
Q 020976 88 KCCFRNRKYKLGLEILSAMKRKGYTF 113 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 113 (319)
...+..|+.+.+..+++.+.+.|..+
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 34455666666666666665555443
No 343
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=47.14 E-value=63 Score=24.03 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=9.8
Q ss_pred HhcCChhHHHHHHHHHhhC
Q 020976 56 CKAGRLRTARWILKELGDS 74 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~ 74 (319)
++.|+.+.+..+++.....
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~ 39 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRS 39 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHhhc
Confidence 3455555555555554433
No 344
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.86 E-value=28 Score=24.85 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=11.7
Q ss_pred HHHHhcCCHHHHHHHHHhhc
Q 020976 228 DRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~ 247 (319)
..|.+.|.+++|.++|++..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHccchHHHHHHHHHHh
Confidence 34556666666666666644
No 345
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=46.76 E-value=1.5e+02 Score=26.03 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=48.5
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCC--chhHHHHHHHHHccC---------------Ch-hHHHHHHHHHHHc-----CCc
Q 020976 227 VDRLGKDGKIDHAINVFESMEVKD--SFTYSSMVHNLCKAK---------------RL-PSASKLLLSCLKS-----GVR 283 (319)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~---------------~~-~~a~~~~~~~~~~-----~~~ 283 (319)
..-+...|++++|..+|.-..+.+ ....|.++.-....- ++ ..|..+.+..... .+.
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 335567899999999998777653 234444443332211 11 2333443332221 222
Q ss_pred c-CHHHHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 020976 284 I-LKSAQKAVVDG-----LRHSGCRREAKKIQSKI 312 (319)
Q Consensus 284 ~-~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~ 312 (319)
+ +..|+..|++. +.+.|+++.|++.++++
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 2 34556655543 26799999999988876
No 346
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=46.54 E-value=87 Score=23.22 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=12.2
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 020976 90 CFRNRKYKLGLEILSAMKRKG 110 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~ 110 (319)
.++.|+.+.+..+++...+.+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHhhcc
Confidence 345566666666666555544
No 347
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=46.13 E-value=1.3e+02 Score=25.07 Aligned_cols=114 Identities=9% Similarity=-0.043 Sum_probs=70.2
Q ss_pred CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHH
Q 020976 129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 208 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (319)
.+.+-|.++-. ..|++-....|..-...+...|++++|.++--...+. +--+..|.+.+-..-...|+..-...+|
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 45555544433 3344444555666667778888888888776655433 3336666666665555567777777888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247 (319)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (319)
..+.+.| ..+..--..+++.-...|+.+-...++.+=+
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~K 456 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDK 456 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCC
Confidence 8887776 4454444445666666777666666665433
No 348
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=45.94 E-value=82 Score=22.78 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=36.0
Q ss_pred HHHHHHHHH---HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 020976 118 YCTVIAAFV---KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-----LEAAYLLLDEMEKQGF 181 (319)
Q Consensus 118 ~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 181 (319)
+-.+|+++. +-.|++.|+-++-+|++.|-.|....-..++.+...-|. ...|...++.....|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334445543 346777777777777777766665555555555555443 2234444444444454
No 349
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.56 E-value=1.4e+02 Score=25.28 Aligned_cols=64 Identities=19% Similarity=0.063 Sum_probs=32.6
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCCH--HHH-HHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976 11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPEL--VTY-NILIKGLCKAGRLRTARWILKELGDS 74 (319)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
..+|.++..|...+.++.|..+.....-... .++. ..| --+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4466666666666666666666666531100 0111 111 12334444566666666666665543
No 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.16 E-value=1.1e+02 Score=23.95 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=10.4
Q ss_pred HHHHHHcCchHHHHHHHHHHHh
Q 020976 122 IAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~ 143 (319)
+...+..|+.+-+..+++....
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKE 109 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhccc
Confidence 3344445555555555544433
No 351
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=44.60 E-value=1.6e+02 Score=25.82 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=24.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 57 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (319)
.|- ++..|.++|.+++|.++.++.... +.--...|...+..|+.
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 453 677888899999998888665432 11111345555556653
No 352
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.58 E-value=1.4e+02 Score=25.19 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChh--hH-HHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGH-APNAI--TY-TTIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
...+|.+++.|...+.++.|..+..+..--.. .++.. .| --+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34567788888888888888888887742100 11111 11 12344555677888888887777655
No 353
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.28 E-value=97 Score=23.12 Aligned_cols=218 Identities=11% Similarity=-0.048 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh----HHHHHHHHHHhCCCCCCcccH
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK----LGLEILSAMKRKGYTFDGFGY 118 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~ 118 (319)
++...-...+.++.+.+.. .+...+..+.. .++...-...+.++.+.+... ....++...... .++...-
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHH
Confidence 4555545555666666643 34444444444 245555555556666665322 222333321111 2344455
Q ss_pred HHHHHHHHHcCc-----hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 020976 119 CTVIAAFVKIGR-----LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 193 (319)
Q Consensus 119 ~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
...+.++...+. ...+...+..+.. .++..+-...+.++...++.+ +...+..+.. .++...-...+.
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 181 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 555555555441 2344444444443 246666666667777766533 3444444443 234444444445
Q ss_pred HHhccC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHH
Q 020976 194 GLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASK 272 (319)
Q Consensus 194 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 272 (319)
++...+ ....+...+..+.+ .++..+-...+.++.+.|+......+...+..++ .-...+.++...|. ..+..
T Consensus 182 aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~~~~~ 255 (280)
T 1oyz_A 182 AININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-KTLLP 255 (280)
T ss_dssp HHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-GGGHH
T ss_pred HHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-hhhhH
Confidence 554444 12334444444433 3455555555666666665443333444333333 23334445555554 24444
Q ss_pred HHHHHHH
Q 020976 273 LLLSCLK 279 (319)
Q Consensus 273 ~~~~~~~ 279 (319)
.+.++..
T Consensus 256 ~L~~~l~ 262 (280)
T 1oyz_A 256 VLDTMLY 262 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 4444443
No 354
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.91 E-value=57 Score=21.03 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=7.3
Q ss_pred ccCChhHHHHHHHHHH
Q 020976 263 KAKRLPSASKLLLSCL 278 (319)
Q Consensus 263 ~~~~~~~a~~~~~~~~ 278 (319)
..++++.|..+...+.
T Consensus 73 ~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 73 LHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3444444444444443
No 355
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=43.86 E-value=43 Score=18.89 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 57 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (319)
.++.++..+++..-+++++-.+++..+.|.- +...|..-.+.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3555666666666666666666666666543 55555555554443
No 356
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=43.51 E-value=60 Score=25.95 Aligned_cols=128 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHhCC-CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc
Q 020976 119 CTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197 (319)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (319)
..++.-|...|+.++|...++++...+ ..+...........=.+...-+.+..++..+...++-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cC----ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976 198 AG----NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 246 (319)
Q Consensus 198 ~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (319)
.. |...|..++..+...-+.-+..+...+...+...+...-...++..+
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~ 148 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQL 148 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHH
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHH
No 357
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=43.17 E-value=93 Score=24.38 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215 (319)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
++..+.+.|+.|...++.-++..+.+.=.++.+..+|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 33444555666666666666666666666667777777666554
No 358
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=42.49 E-value=92 Score=22.32 Aligned_cols=12 Identities=8% Similarity=-0.030 Sum_probs=4.4
Q ss_pred CCHHHHHHHHHH
Q 020976 300 GCRREAKKIQSK 311 (319)
Q Consensus 300 g~~~~a~~~~~~ 311 (319)
|+.+.+.++.+.
T Consensus 221 ~~~~~~~~l~~~ 232 (237)
T 3b7b_A 221 SQVWSALQMSKA 232 (237)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 359
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.72 E-value=1.2e+02 Score=23.62 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=46.7
Q ss_pred chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976 9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT--YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86 (319)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
|..-++ .+...+..|+.+-+..+ .+.|..++... -.+.+...+..|+.+-+.-+++. |..++...-...
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~L----l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~ 87 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRL----IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV----GEVHSLWHGQKP 87 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH----CCCCCCBTTBCH
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHH----HHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCccccCCCCH
Confidence 333344 44455566776544444 44555444321 12234445566776555444433 333333222233
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC
Q 020976 87 MKCCFRNRKYKLGLEILSAMKRKGYTF 113 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 113 (319)
+...+..|+.+-+..+++.....|..+
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 444556677776666666555445443
No 360
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=39.56 E-value=46 Score=22.96 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=15.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHH
Q 020976 14 NIMLNGLCKNRYTDNALRMFRGLQ 37 (319)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~ 37 (319)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 455566666677777777766654
No 361
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.38 E-value=92 Score=21.43 Aligned_cols=49 Identities=4% Similarity=-0.068 Sum_probs=21.5
Q ss_pred CChhHHHHHHHHHhhCCCCC--ChhhHHHHHH-H-----HHhcCChhHHHHHHHHHH
Q 020976 59 GRLRTARWILKELGDSGHAP--NAITYTTIMK-C-----CFRNRKYKLGLEILSAMK 107 (319)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~ 107 (319)
|++-+|.++++.+=.....+ ....|..||+ . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555544332222 2333444444 1 123455555555555443
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.35 E-value=2.4e+02 Score=26.05 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh----hhHHHHHHHHHhcC
Q 020976 117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI----VSYNTLINLYCKEG 164 (319)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 164 (319)
-|..++..+-+.+.++.+.++-+...+.--+.|. ..|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5778888888999999888888877764212222 35666666666544
No 363
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=38.16 E-value=61 Score=21.33 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=9.9
Q ss_pred HHHHhhcCChHHHHHHHHH
Q 020976 17 LNGLCKNRYTDNALRMFRG 35 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~ 35 (319)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344555665555555544
No 364
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=34.50 E-value=1.9e+02 Score=24.72 Aligned_cols=73 Identities=7% Similarity=-0.048 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 020976 165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (319)
+.+.......++..+=+--+..-...++..|.+.|-.+.|..+++.+-..-+. +...+ .-+..|.++|+++..
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 34445555555554422224455666777777777777777777776554322 22333 444566677766543
No 365
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=34.14 E-value=54 Score=19.23 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=19.6
Q ss_pred CCCcchHhHHHHHHHHhhcCChHHHHHHHHHH
Q 020976 5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGL 36 (319)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 36 (319)
+++|++.||+-+...+-+..=..++..+..++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56777778877766665555445555554443
No 366
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=33.84 E-value=83 Score=20.65 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=9.5
Q ss_pred HHHHHcCchHHHHHHHHH
Q 020976 123 AAFVKIGRLKEATDYMEQ 140 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~ 140 (319)
...+..|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 344455665555555554
No 367
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=33.38 E-value=1.7e+02 Score=22.90 Aligned_cols=40 Identities=8% Similarity=0.139 Sum_probs=19.5
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976 209 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248 (319)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (319)
..+.+.|+.|...++..++..+.+.=.++.+.++|+.+..
T Consensus 233 ~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~ 272 (345)
T 2qfz_A 233 RHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQS 272 (345)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTT
T ss_pred HHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHh
Confidence 3334444444444555555555544445555555555443
No 368
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.22 E-value=1.3e+02 Score=21.53 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=8.1
Q ss_pred CChhHHHHHHHHHhhCC
Q 020976 59 GRLRTARWILKELGDSG 75 (319)
Q Consensus 59 ~~~~~a~~~~~~~~~~~ 75 (319)
.+++.|+-++-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 369
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.16 E-value=1.7e+02 Score=22.55 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHhhc----cCCchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976 205 RLHLEYMNKIGFDSNLEA--YNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 278 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (319)
..+.+.+.+.|..++... -...+...+..|+.+.+..++..-. ..|..-.+.|..+ +..|+.+ +.+.++
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHH
Confidence 344455566665554321 1123445567788887777765322 1122222333322 3445543 444556
Q ss_pred HcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976 279 KSGVRILKSAQKAVVDGLRHSGCRREAK 306 (319)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 306 (319)
+.|..++..+ .+...++.|+.+-+.
T Consensus 294 ~~GAd~n~~~---~L~~A~~~~~~~iv~ 318 (337)
T 4g8k_A 294 KRGASTDCGD---LVMTARRNYDHSLVK 318 (337)
T ss_dssp TTSCSSTTCC---HHHHHHHTTCHHHHH
T ss_pred HCCCCCCCCC---HHHHHHHcCCHHHHH
Confidence 6787776554 233334566665443
No 370
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=32.96 E-value=2.5e+02 Score=24.47 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHhCCCccChhhHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHH
Q 020976 130 RLKEATDYMEQMVTDGVQLDIVSYNT----LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205 (319)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (319)
+.+.|...+....... ..+...... +...+...+...++...+....... ++.......+....+.|+++.+.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777665432 122222222 2222223343445555665544332 23333333444445667888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 248 (319)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (319)
..|..|.... .......-.+..++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777765421 12234445566677777888888777776543
No 371
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=32.71 E-value=83 Score=18.96 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHhhccCCchhHHHHHHHHHccCC
Q 020976 233 DGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKR 266 (319)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (319)
....++|.++++.+..+.+..|..+..++...+.
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 4456666666666666666666666666655443
No 372
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.50 E-value=90 Score=19.31 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAG 199 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
+.++.++....|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555556666666666666666665444
No 373
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.42 E-value=1.4e+02 Score=21.32 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=21.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHH
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPEL---VTYNILIKGLCKAGRLRTARWILKE 70 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 70 (319)
+...++.|+.+....+++. .|..++. .-++ .+...+..|+.+-+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHc
Confidence 3445556665544444332 1332221 1122 23334455666555555543
No 374
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=32.21 E-value=3.4e+02 Score=26.37 Aligned_cols=78 Identities=8% Similarity=0.046 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHH
Q 020976 62 RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 141 (319)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 141 (319)
+...+.|.++.+---.-|.......+.-..+.+++..|++++.++.+. +|+...|..++..+...| |+-...+.+++
T Consensus 1266 ~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINRM 1342 (1354)
T ss_dssp HHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHhh
Confidence 344555566655311113323222233333567777788888777766 456667776666665544 33333444444
Q ss_pred H
Q 020976 142 V 142 (319)
Q Consensus 142 ~ 142 (319)
.
T Consensus 1343 ~ 1343 (1354)
T 3lxu_X 1343 M 1343 (1354)
T ss_dssp H
T ss_pred h
Confidence 3
No 375
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=31.26 E-value=62 Score=17.02 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
+...|+++++++.+.|-.|+... .++ +--.+..-....+++|+.
T Consensus 8 Dv~RaiELle~lq~sgevp~~KL-~aL-q~VLqSdF~~aVREVYEh 51 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNAKL-ASL-QQVLQSEFFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHHHH-HHH-HHHHSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcHHH-HHH-HHHHHHHHHHHHHHHHHH
Confidence 56778888888888877666542 222 222344444555555554
No 376
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.89 E-value=90 Score=21.79 Aligned_cols=52 Identities=13% Similarity=-0.023 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 95 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
|....++.++..++...-.+.++-.+.+....|. .+..+|-.-++.+++..-
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF 160 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQF 160 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 4444556666666666666666666666666553 355555555555555433
No 377
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.75 E-value=3.3e+02 Score=25.03 Aligned_cols=163 Identities=6% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHhC--CCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976 84 TTIMKCCFRNRK---YKLGLEILSAMKRK--GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158 (319)
Q Consensus 84 ~~l~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
..++...+..|. .+.|.+.|+..... +.+.++..-..+.....+.|+.++-..+++..... .+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCC
Q 020976 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGK 235 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 235 (319)
+++...+.+...++++................+..........+.+.+.+..=.+. .+......+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHhhccC
Q 020976 236 IDHAINVFESMEVK 249 (319)
Q Consensus 236 ~~~a~~~~~~~~~~ 249 (319)
-++-.+-++...+.
T Consensus 847 t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 847 SEFELQQLEQFKKN 860 (909)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhh
No 378
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.46 E-value=1.5e+02 Score=24.64 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=14.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 020976 14 NIMLNGLCKNRYTDNALRMFRGLQKHG 40 (319)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 40 (319)
|.++..|.+.++.+-+..++..+...+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~ 206 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKS 206 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 445555555555555555555554443
No 379
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.36 E-value=1.4e+02 Score=20.65 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=52.7
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh---HHHHHHHHHh
Q 020976 18 NGLCKNRYTDNALRMFRGLQKHGFVPELV--TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT---YTTIMKCCFR 92 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 92 (319)
...++.|+++....++.. ++. ... .-.+.+...+..|+.+.-.++.+.+.+.|..++... ++.|..++..
T Consensus 11 ~~Aa~~g~~~~~~~l~~~----~~~-~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEK----GYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHHHHSCHHHHHHHHHH----SSS-CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc----Ccc-cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 344677888876666543 222 111 112345555667777766778888888887776432 2233322222
Q ss_pred -cCChhHHHHHHHHHHhCCCCCCc
Q 020976 93 -NRKYKLGLEILSAMKRKGYTFDG 115 (319)
Q Consensus 93 -~~~~~~a~~~~~~~~~~~~~~~~ 115 (319)
..+.....++.+.+.+.|..++.
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred CCcchhhHHHHHHHHHHCCCCCCc
Confidence 22344456677777777766654
No 380
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=29.13 E-value=50 Score=24.17 Aligned_cols=79 Identities=13% Similarity=0.236 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhccC-----------CchhHHHHHHHHHccC---------ChhHHHHHHHHHHHcCCcc-CHHHHHHHHH
Q 020976 236 IDHAINVFESMEVK-----------DSFTYSSMVHNLCKAK---------RLPSASKLLLSCLKSGVRI-LKSAQKAVVD 294 (319)
Q Consensus 236 ~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 294 (319)
.+.|..++..|-.+ ...-|..+..++.+.| +.+.-.++++.+++.|++- =+..|.++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 67777777777644 3445677777777766 3456667777777777543 3456777776
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 020976 295 GLRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~ 314 (319)
--.-.-+.++..+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 65555567888888877765
No 381
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.11 E-value=1.5e+02 Score=20.95 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=5.9
Q ss_pred HhcCChhHHHHHHH
Q 020976 56 CKAGRLRTARWILK 69 (319)
Q Consensus 56 ~~~~~~~~a~~~~~ 69 (319)
+..|+.+....+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444443
No 382
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=28.96 E-value=51 Score=24.46 Aligned_cols=80 Identities=10% Similarity=0.154 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhccC-----------CchhHHHHHHHHHccC---------ChhHHHHHHHHHHHcCCcc-CHHHHHHHHH
Q 020976 236 IDHAINVFESMEVK-----------DSFTYSSMVHNLCKAK---------RLPSASKLLLSCLKSGVRI-LKSAQKAVVD 294 (319)
Q Consensus 236 ~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 294 (319)
.+.|..++..|-.+ ...-|..+..++.+.| +.+.-.++++.+++.|++- =+..|.++|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 56777777777644 3445677777777765 3456677777777777643 3456777776
Q ss_pred HHHhcCCHHHHHHHHHHHHhh
Q 020976 295 GLRHSGCRREAKKIQSKIRMA 315 (319)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~ 315 (319)
--.-.-++++..+++..+++.
T Consensus 250 k~TG~TrpedV~~ll~~~K~l 270 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKKL 270 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 555555678888888777653
No 383
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.88 E-value=1e+02 Score=22.06 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHH-----HHHHHHHhcCChhHHHHHHHHHHhC
Q 020976 61 LRTARWILKELGDSGHAPNAITYT-----TIMKCCFRNRKYKLGLEILSAMKRK 109 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.+.|+.+|+.+...-..+ ...-. ..+-.|.+.|.+++|.+++++....
T Consensus 94 LESAl~v~~~I~~e~~~l-heei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKL-HEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 456777777665532100 01111 1233566777777777777775544
No 384
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=28.62 E-value=1.4e+02 Score=21.22 Aligned_cols=70 Identities=6% Similarity=-0.029 Sum_probs=40.8
Q ss_pred CHHHHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976 235 KIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 312 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (319)
+.....++.+.++.. +..-.-..|.++.+.|++++|.++..++... +..... ..+.+++.-|.-++.+.
T Consensus 14 ~l~~~~~~~~~LR~qrHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~K~ 84 (192)
T 1ixm_A 14 DTALTNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLTFN 84 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHHHH
Confidence 344445555544433 3333445688888888999888888887643 111122 45566666666555544
Q ss_pred H
Q 020976 313 R 313 (319)
Q Consensus 313 ~ 313 (319)
.
T Consensus 85 ~ 85 (192)
T 1ixm_A 85 W 85 (192)
T ss_dssp G
T ss_pred H
Confidence 3
No 385
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=27.97 E-value=1.5e+02 Score=20.57 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc
Q 020976 97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
+.+..+++.+.+.|+.-|...-...+....+.|.+. ...+-.++...|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 344556666666665555544444555544443322 23455566666664
No 386
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.22 E-value=1.7e+02 Score=20.78 Aligned_cols=24 Identities=13% Similarity=-0.222 Sum_probs=14.2
Q ss_pred HHHhccCChhHHHHHHHHHHhcCC
Q 020976 193 DGLCKAGNIKGARLHLEYMNKIGF 216 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~ 216 (319)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334456666666666666666553
No 387
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=27.17 E-value=71 Score=21.72 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=18.0
Q ss_pred CHHHHHHHHHhhccC-----CchhHHHHHHHHH
Q 020976 235 KIDHAINVFESMEVK-----DSFTYSSMVHNLC 262 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~ 262 (319)
++++|.+++..++.. .+..||.++..+-
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK 105 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQ 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 466777776666543 6777777776553
No 388
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.81 E-value=1.3e+02 Score=19.36 Aligned_cols=41 Identities=10% Similarity=-0.151 Sum_probs=20.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976 33 FRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 73 (319)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
|+.+....+.|++..--.-+..+...++++.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444544433333333334456667777666666654
No 389
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=26.25 E-value=1.5e+02 Score=20.88 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=5.7
Q ss_pred HhcCCHHHHHHHH
Q 020976 231 GKDGKIDHAINVF 243 (319)
Q Consensus 231 ~~~~~~~~a~~~~ 243 (319)
+..|+.+-+..++
T Consensus 182 ~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 182 LAEGHGDAAVLLV 194 (228)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3344444444444
No 390
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=26.03 E-value=4.7e+02 Score=25.49 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=17.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976 162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (319)
..+++..|++++.++.+. +|+...|..++..+...
T Consensus 1296 ~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGAL 1330 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHc
Confidence 455555555555555544 23444454444444333
No 391
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.70 E-value=1.2e+02 Score=19.73 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=26.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976 50 ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 101 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
-.|...+..++.+-|.++++-..+.| +...|..++-.|...=+++-+++
T Consensus 37 DAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 34444555566666666666665543 45555555555555555555444
No 392
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=25.62 E-value=1.7e+02 Score=20.16 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=36.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHhhccCCchhHHHHHHH
Q 020976 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK--IDHAINVFESMEVKDSFTYSSMVHN 260 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~l~~~ 260 (319)
...++.-|...++.++|...++++.... ........++......++ -+.+..++..+.. +..+-..+..+
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~G 84 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKS 84 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHH
Confidence 4567777888888888888888765221 111222333333333332 2334555555533 44343344333
No 393
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=25.35 E-value=1e+02 Score=21.84 Aligned_cols=51 Identities=6% Similarity=-0.035 Sum_probs=24.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 020976 17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68 (319)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 68 (319)
+...++.|+.+.+..+++.-.......+..-.+ .+...+..|+.+-+..++
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll 56 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRI-PLHWSVSFQAHEITSFLL 56 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence 455667788777666665533221112222222 333344566665444333
No 394
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=25.26 E-value=1.5e+02 Score=19.57 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=5.3
Q ss_pred hcCChhHHHHHH
Q 020976 57 KAGRLRTARWIL 68 (319)
Q Consensus 57 ~~~~~~~a~~~~ 68 (319)
+.|+.+....++
T Consensus 17 ~~g~~~~v~~ll 28 (165)
T 3twr_A 17 KAGDVETVKKLC 28 (165)
T ss_dssp HHTCHHHHHHHC
T ss_pred HhCCHHHHHHHH
Confidence 444544444433
No 395
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=24.80 E-value=64 Score=15.11 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 020976 292 VVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
-+.-|...|..++|..+-++++
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 3456677777777777766665
No 396
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=24.33 E-value=2.6e+02 Score=21.96 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccC--H------HHH
Q 020976 224 NCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL--K------SAQ 289 (319)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~------~~~ 289 (319)
+.++..+...+..+.-..+++.+... +...-+. +..+...+..+.-..+++++......|. . ..=
T Consensus 218 n~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~V-vek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~yg 296 (351)
T 3gvo_A 218 NYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNV-VEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYA 296 (351)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHH-HHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTH
T ss_pred HHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHH-HHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcch
Confidence 45666667777777767777766544 3333333 3333344544444455666553210010 0 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 020976 290 KAVVDGLRHSGCRREAKKIQSKIR 313 (319)
Q Consensus 290 ~~l~~~~~~~g~~~~a~~~~~~~~ 313 (319)
+.++......++.++-..+.+.++
T Consensus 297 nyViq~~L~~~~~~~r~~i~~~i~ 320 (351)
T 3gvo_A 297 NYVVQKMIDMAEPAQRKIIMHKIR 320 (351)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345555555566655555555543
No 397
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.57 E-value=3.1e+02 Score=22.57 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=45.2
Q ss_pred HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCCh
Q 020976 127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-----LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 201 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
+.++.+.|+.++.+|.+.|..|....-..+..+...-|. ...|...++....-|.+--.......+-.++.+-+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pks 346 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKS 346 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcc
Confidence 457888888888888888877766666666666655554 234555555555555432222233333333444433
Q ss_pred hHHH
Q 020976 202 KGAR 205 (319)
Q Consensus 202 ~~a~ 205 (319)
..+.
T Consensus 347 n~~~ 350 (447)
T 3pvs_A 347 NAVY 350 (447)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 3333
No 398
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.49 E-value=1.8e+02 Score=19.76 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc
Q 020976 98 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 147 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
.+..+++.+.+.|+.-|...-...+....+.| .....+-.++...|+.
T Consensus 48 ~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 48 DYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 34444555555554433333333344333322 1223444455555543
No 399
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.23 E-value=3.2e+02 Score=22.64 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc--------HH-HHHHHHHHcCchHHHHHHHHHHHh
Q 020976 82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG--------YC-TVIAAFVKIGRLKEATDYMEQMVT 143 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~-~ll~~~~~~~~~~~a~~~~~~~~~ 143 (319)
..+.+++.|.+.++...+..++..+...+..|+... |. -+...+...+++.+|.+.+.+...
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 356778889999999999999988887665333221 21 234455667888888888777655
No 400
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.22 E-value=2.6e+02 Score=21.66 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=24.1
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976 172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 215 (319)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
++..+.+.|+.|...++..++..+.+.=.++.+.++|+.+...|
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g 253 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQG 253 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCC
Confidence 34444455555555555555555555555556666666555544
No 401
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=23.17 E-value=2.2e+02 Score=20.69 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=25.9
Q ss_pred HHHHHHhcC-CHHHHHHHHHhhccC---CchhH-HHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976 226 IVDRLGKDG-KIDHAINVFESMEVK---DSFTY-SSMVHNLCKAKRLPSASKLLLSCLKSGVRI 284 (319)
Q Consensus 226 l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (319)
|-.-+.+.| ..+.+..++..+... |-.-| ..++......+. .....+-+++...|+.+
T Consensus 81 L~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~-~G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 81 IVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDL-KGPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHcCCCH
Confidence 333333444 334444555555444 22222 233333333122 23555666777777753
No 402
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.06 E-value=2.2e+02 Score=20.64 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=17.6
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976 58 AGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
-.+++.|+-++-+|.+.|-.|.-..-..++-+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356666666666666666544333333333333
No 403
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=22.98 E-value=1.8e+02 Score=22.93 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-----CchhHHHHHHHHHccCChhHHHHHHHHHHHcC--CccCHHHHHHHHHHHHhc
Q 020976 227 VDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG--VRILKSAQKAVVDGLRHS 299 (319)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 299 (319)
+..+......+.-..+++++... ....=|.++..+...+..+.-..+++.+...= +.-+.. -..++..|...
T Consensus 185 vq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~-gs~Vvek~l~~ 263 (351)
T 3gvo_A 185 IQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKF-ASNVVEKCVTH 263 (351)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHh
Confidence 33344444445555555555433 12223455666666666655445554432110 000111 12345555555
Q ss_pred CCHHHHHHHHHHHH
Q 020976 300 GCRREAKKIQSKIR 313 (319)
Q Consensus 300 g~~~~a~~~~~~~~ 313 (319)
+..+.-..+++++.
T Consensus 264 ~~~~~r~~ii~el~ 277 (351)
T 3gvo_A 264 ASRAERALLIDEVC 277 (351)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 55555555555554
No 404
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.66 E-value=1.4e+02 Score=18.22 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=7.5
Q ss_pred CChhHHHHHHHHHHHc
Q 020976 265 KRLPSASKLLLSCLKS 280 (319)
Q Consensus 265 ~~~~~a~~~~~~~~~~ 280 (319)
|++=+|-++++..-..
T Consensus 15 g~~~eaHEvlE~~W~~ 30 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLK 30 (94)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 4444444444444433
No 405
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=22.38 E-value=2.2e+02 Score=20.46 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHH
Q 020976 221 EAYNCIVDRLGKDGKIDHAIN 241 (319)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~ 241 (319)
..|..++.+.....+.++..+
T Consensus 98 ~ly~~~~~~~~~~~~~~~~~~ 118 (216)
T 1pbw_A 98 AVYSEMISLAPEVQSSEEYIQ 118 (216)
T ss_dssp HHHHHHHHHGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 344444444333333333333
No 406
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.68 E-value=41 Score=21.73 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=16.1
Q ss_pred CHHHHHHHHHhhccC-----CchhHHHHHHHHH
Q 020976 235 KIDHAINVFESMEVK-----DSFTYSSMVHNLC 262 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~ 262 (319)
++++|.+++..++.. .+..||.++..+-
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk 74 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQ 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 455666666555533 5666666665553
No 407
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.31 E-value=94 Score=17.01 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHhCC-CCCC
Q 020976 24 RYTDNALRMFRGLQKHG-FVPE 44 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~-~~~~ 44 (319)
-+++.|...|..+...| ++|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 47899999999987654 5554
No 408
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.92 E-value=2.6e+02 Score=20.80 Aligned_cols=210 Identities=10% Similarity=0.046 Sum_probs=72.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhC---------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh-
Q 020976 12 TFNIMLNGLCKNRYTDNALRMFRGLQKH---------GF-VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA- 80 (319)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 80 (319)
...+.+...+..|+.+...++....... ++ ..+..-++ .+...+..|+.+.+..++ +.|..++.
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t-~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~ 88 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS-PMHEAAIHGHQLSLRNLI----SQGWAVNII 88 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCSCC-HHHHHHHTTCHHHHHHHH----HTTCCSCEE
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCC-HHHHHHHcCCHHHHHHHH----HCCCCCCCc
Confidence 3455667777778877776654443221 11 01111122 344455677765554444 34444432
Q ss_pred --hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH--HHHHHHHHHcCchHHHHHHHHHHHhCCCccChhh-HHH
Q 020976 81 --ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY--CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS-YNT 155 (319)
Q Consensus 81 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 155 (319)
.-.+. +...+..|+.+- ++.+.+.|..++.... .+.+...+..|+.+-+..++ +.|..++... -..
T Consensus 89 ~~~g~t~-L~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~g~t 159 (285)
T 3d9h_A 89 TADHVSP-LHEACLGGHLSC----VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL----QHGASVQPESDLAS 159 (285)
T ss_dssp CTTCCCH-HHHHHHTTCHHH----HHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSSCSCTTSC
T ss_pred CCCCCCH-HHHHHHCCcHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHH----HCCCCCCCCCCCCC
Confidence 22223 333445566543 3344444544432211 12334444556655443333 3333322111 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH---hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHH
Q 020976 156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKY---THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL--EAYNCIVDRL 230 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 230 (319)
.+...+..|+.+- ++.+.+.|..++.. -.+ .+...+..|+.+-+..+ .+.|..++. ... ..+...
T Consensus 160 ~L~~A~~~g~~~~----v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~~~~~~v~~L----l~~ga~~~~~~~g~-t~L~~A 229 (285)
T 3d9h_A 160 PIHEAARRGHVEC----VNSLIAYGGNIDHKISHLGT-PLYLACENQQRACVKKL----LESGADVNQGKGQD-SPLHAV 229 (285)
T ss_dssp HHHHHHHHTCHHH----HHHHHHTTCCTTCCBTTTBC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCBTTB-CHHHHH
T ss_pred HHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHH----HHCCCCCCCCCCCC-CHHHHH
Confidence 2333444555543 33334444433221 112 22333445555444333 334433321 111 223344
Q ss_pred HhcCCHHHHHHHHHh
Q 020976 231 GKDGKIDHAINVFES 245 (319)
Q Consensus 231 ~~~~~~~~a~~~~~~ 245 (319)
+..|+.+-+.-+++.
T Consensus 230 ~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 230 VRTASEELACLLMDF 244 (285)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 556666665555553
No 409
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=20.58 E-value=2.1e+02 Score=19.46 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976 252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 311 (319)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (319)
..|..++..+...+++. ...+++.+++..+. .......++..+.+.|....++-+|++
T Consensus 99 ~~~~~l~~~a~~~~D~~-~~~fl~~~l~eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~ 156 (165)
T 1eum_A 99 QKINELAHAAMTNQDYP-TFNFLQWYVSEQHE-EEKLFKSIIDKLSLAGKSGEGLYFIDK 156 (165)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChh-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCccchhHHhH
Confidence 34556666555555543 23333344433222 334555566666666654445555554
No 410
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.47 E-value=1.7e+02 Score=18.38 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=11.4
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 020976 296 LRHSGCRREAKKIQSKIRM 314 (319)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~ 314 (319)
..+.|++++|.+.+++..+
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4566666666666655443
Done!