BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020977
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/247 (49%), Positives = 158/247 (63%), Gaps = 14/247 (5%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXX 243
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N
Sbjct: 121 QFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 244 XXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKD 302
IFK+PEP IP AGARVMSL D KMSKS + + I LL DPK
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 303 VSHKFFR 309
V K R
Sbjct: 228 VVKKIKR 234
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 151/233 (64%), Gaps = 15/233 (6%)
Query: 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L K
Sbjct: 33 TMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNI 92
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS G E
Sbjct: 93 RNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNE 150
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXX 255
V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N
Sbjct: 151 AVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND--------- 201
Query: 256 XXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-PKDVSHKF 307
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD PK + K
Sbjct: 202 ---IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKI 251
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 148/235 (62%), Gaps = 14/235 (5%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN------------KRYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD K + +T
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVT 222
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 145/235 (61%), Gaps = 14/235 (5%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS A
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGA--AAAA 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN------------KRYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD K + +T
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVT 222
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 143/235 (60%), Gaps = 14/235 (5%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W L IG L + QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFN------------KRYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD K + +T
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVT 222
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 143/235 (60%), Gaps = 14/235 (5%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W L IG L + QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFN------------KRYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD K + +T
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVT 222
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 206 bits (525), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 149/236 (63%), Gaps = 11/236 (4%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
S++ K ++SGVQP+G + +GNYLGA++ W +Q+ Y+ + +VDLHAIT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
+AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARY 120
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXX 252
+ V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N
Sbjct: 121 AND-VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN---------NI 170
Query: 253 XXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVSHKF 307
IF +PEP IP ARVMSL D KMSKS + ++ I LL DPK + K
Sbjct: 171 YSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKI 226
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 142/240 (59%), Gaps = 31/240 (12%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 109
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER
Sbjct: 110 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAER------------------- 150
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNL 318
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD K + ++ L+N+
Sbjct: 151 FFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAISNLLNI 210
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 146/261 (55%), Gaps = 39/261 (14%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLP--YDTQQLSKA 134
KR++SG+QP+G IH+GNYLGAIK W+A+ + F IVD HA+T P YD L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQ-- 119
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXX 254
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGET------- 172
Query: 255 XXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKS--------------------APSDQSR 294
F P+ L+ P RV + DG +KMSKS P D R
Sbjct: 173 -----FPEPQALLNPEAPRVPGI-DGKAKMSKSLGNTIGLLEPEESIWQKIQHLPDDPQR 226
Query: 295 INLLDPKDVSHKFFRRFLTFL 315
I L DP D +L++
Sbjct: 227 IRLSDPGDPERTILFTYLSYF 247
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 140/241 (58%), Gaps = 33/241 (13%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVSHKFFRRFLTFLMN 317
F +PE IP GAR+MSL D KMSKS P+ ++ I LL D K + K ++ L+N
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSPGISNLLN 209
Query: 318 L 318
+
Sbjct: 210 I 210
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 32/221 (14%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 190
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 32/221 (14%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 190
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 130/221 (58%), Gaps = 35/221 (15%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM--------------VS 107
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 108 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 153
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299
F +PE R+MSL D KMSKS P+ ++ I LLD
Sbjct: 154 -FTIPE------ARRIMSLVDPTKKMSKSDPNPKAYITLLD 187
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 127/221 (57%), Gaps = 40/221 (18%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299
F +PE R+MSL D KMSKS P+ ++ I LLD
Sbjct: 151 -FTIPE--------RIMSLVDPTKKMSKSDPNPKAYITLLD 182
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 132/240 (55%), Gaps = 17/240 (7%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
KR ++G+Q +G HLGNYLG +++ I LQ + F+ DLH+IT+ + Q L + +
Sbjct: 5 KRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDL 64
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-----G 193
LA G+D KA +F+QS + H + +L+ + +G L +M QFK K + G
Sbjct: 65 VRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNG 124
Query: 194 GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXX 253
N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+
Sbjct: 125 TLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLK------ 178
Query: 254 XXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313
++P+ + R+M L D KMSKS+ + I L DPK+V K R+ T
Sbjct: 179 ------LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATT 232
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|B Chain B, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|C Chain C, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|D Chain D, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
Length = 338
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 128/235 (54%), Gaps = 14/235 (5%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I S + PTG I +G Y+GA++ ++ LQ+ Y F I D AIT+ D +L + R
Sbjct: 2 KTIFSAICPTGVITIGRYIGALRQFVELQHEYNCYFCIADQSAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+ S V AH + W L IG L + FKE S AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIASEVPAHAQAAWXLQCIVYIGELERXTLFKELS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
LLT+P + A+ ILLY +D VPVGE KQ ELTR+LAER N
Sbjct: 120 AGLLTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRDLAERFNKRYGE------------ 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313
+F +PE IP GAR+ SL D +S P+ ++ I LLD K + +T
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKSXYQSDPNPKAYITLLDDAKTIEKKIKSAVT 222
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 126/213 (59%), Gaps = 22/213 (10%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD-TQQLSKATRE 137
RI+SG++PTG +H+G+ +GA++NW+ LQ E +F+ D HA+T YD +L + TR+
Sbjct: 14 RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRD 73
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
+LACGID K+ +FVQS V+ H EL L S + L ++ +KE + +++
Sbjct: 74 LVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDL 133
Query: 198 GVA-LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXX 256
A L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R N
Sbjct: 134 STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFN------------YLY 181
Query: 257 XAIFKVPEPLIPPAGARVMSL--TDGLSKMSKS 287
+F PE ++ +RV L TDG KMSKS
Sbjct: 182 DEVFPEPEAIL----SRVPKLPGTDG-RKMSKS 209
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3M5W|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3TZL|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
pdb|3TZL|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
Length = 322
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 120/208 (57%), Gaps = 16/208 (7%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 139
R+++G+QP+G +H+GNY GAIK + Q + FI + HA T D ++L + + + A
Sbjct: 5 RVLTGLQPSGDLHIGNYFGAIKQXVDAQEKSQXFXFIANYHAXTSSQDGEKLKQNSLKAA 64
Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 199
A +L+ GID K+ ++QS V+ EL W+LS TP G L + +K+K A G +
Sbjct: 65 AAFLSLGIDPQKSVFWLQSDVKEVXELYWILSQFTPXGLLERAHSYKDKV--AKGLSASH 122
Query: 200 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXAI 259
L +YPVL A+DILL+ + VPVG+DQ QH+E+ R++A +VN I
Sbjct: 123 GLFSYPVLXAADILLFDTRIVPVGKDQIQHVEIARDIALKVN------------NEWGEI 170
Query: 260 FKVPEPLIPPAGARVMSLTDGLSKMSKS 287
F +PE + A V+ TDG +K SKS
Sbjct: 171 FTLPEARVNEEVAVVVG-TDG-AKXSKS 196
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 2/166 (1%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATR 136
+ R+++G +PTG++HLG+ G+++N + LQ+ E + D+ A+T +D +Q+ +
Sbjct: 2 RPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVL 61
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGE 195
A YLA G+D K + VQS V EL + + L + K E + K GE
Sbjct: 62 AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 121
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
V YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 122 RVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFN 167
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATRETA 139
+++G +PTG++HLG+ G+++N + LQ+ E + D+ A+T +D +Q+ + A
Sbjct: 25 VLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVA 84
Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGENVG 198
YLA G+D K + VQS V EL + + L + K E + K GE V
Sbjct: 85 LDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVP 144
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 145 AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFN 187
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT-QQLSKAT 135
K R G +P+G IHLG+ + ++ + LQ + +E + + D+HA T +++++
Sbjct: 32 KPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVA 90
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGG 194
+++A G+D S+A + S + + + + I LN+ + E S +
Sbjct: 91 DYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRK-- 148
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235
E+ V+ + YP++ A DI D G DQ++ L RE
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARE 189
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 99/257 (38%), Gaps = 58/257 (22%)
Query: 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-NSYETLFFIVDLHAITLPY--DT 128
A + + +++G P+G H G+ L + I LQ N ++ I D A +
Sbjct: 64 AKARGERVAVLTGFMPSGKFHFGHKL-TVDQLIYLQKNGFKVFVAIADAEAFAVRRIGRE 122
Query: 129 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 188
+ + A E A +A G+D + Q+ + TP ++IQ
Sbjct: 123 EAVRIAVEEYIANMIALGLDPKDTEFYFQT------------NRGTP---YFRLIQLFSG 167
Query: 189 SHKAGGENVGVALLTYPVLMAS-----DILLYQSD--------FVPVGEDQKQHLELTRE 235
A LT +MAS DIL Q D VPVG DQ HL LTR+
Sbjct: 168 KVTAAEMEAIYGELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRD 227
Query: 236 LAERVNXXXXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLS--KMSKSAPSDQS 293
LA+R+ + ++ P + L GL KMS S P S
Sbjct: 228 LADRM----------------AGVVELERP-----ASTYHKLQPGLDGRKMSSSRPD--S 264
Query: 294 RINLLDPKDVS-HKFFR 309
I L DP +V+ +K FR
Sbjct: 265 TIFLTDPPEVARNKLFR 281
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 13/158 (8%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 93 FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
VA + YP++ +DI D G +Q++ L REL
Sbjct: 146 VAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIILADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL---KAKYVYGSEFMLDKDYTLNVYRLALKTTLKRARRSMELIARED-- 141
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
EN VA + YP++ + I D G +Q++ L REL
Sbjct: 142 --ENPKVAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHMLAREL 183
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKA 192
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE--- 140
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 236
EN VA + YP+ M + L Y+ V VG E +K H+ L REL
Sbjct: 141 -DENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKA 192
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE--- 140
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
EN VA + YP++ + D V G +Q++ L REL
Sbjct: 141 -DENPKVAEVIYPIMQVNPAHYQGVDVVVGGMEQRKIHMLAREL 183
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 93 FEAMGL---KAKYVYGSTFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
VA + YP++ + I D G +Q++ L REL
Sbjct: 146 VAEVIYPIMQVNAIHYPGVDVAVGGMEQRKIHMLAREL 183
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKA 192
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED-- 141
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
EN VA + YP++ + D G +Q++ L REL
Sbjct: 142 --ENPKVAEVIYPIMQVNGCHYRGVDVAVGGMEQRKIHMLAREL 183
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 21/162 (12%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIVLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-------G 194
+ A G+ KA S W+L + ++ K +
Sbjct: 93 FEAMGL---KAKYVYGSE--------WMLDKDYTLNVYRLALKTTLKRARRSMELIARED 141
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
EN VA + YP++ + D G +Q++ L REL
Sbjct: 142 ENPKVAEVIYPIMQVNGAHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DL A + + ++ K
Sbjct: 28 EKSAIIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLFAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHV--RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
++ A G+ V+ S + + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL--KAKYVYGSSFMLDKDYTLNVYRLALKTTLKRARRSMELIARED--- 141
Query: 194 GENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 236
EN VA + YP+ M + L Y+ V VG E +K H+ L REL
Sbjct: 142 -ENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 13/158 (8%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 33 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 91
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 92 FEAMGL---KAKYVYGSPFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 144
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
VA + YP++ + D G +Q++ L REL
Sbjct: 145 VAEVIYPIMQVNTSHRLGVDVAVGGMEQRKIHMLAREL 182
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Query: 80 RIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSK---AT 135
R G +P+G +H+ A+ E +F++ D A+ +L K
Sbjct: 42 RCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVG 101
Query: 136 RETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
R ++ A G+D K S + +H + W + IG N + + K K G
Sbjct: 102 RYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRM--VLDIGRQNTIARIK-KCCTIMG 158
Query: 195 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
+ G A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 159 KTEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLI 207
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 13/158 (8%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+YL IK I LQN+ ++ + ++ DL A + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIYLADLAAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 93 FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
VA + YP++ + D G +Q++ L REL
Sbjct: 146 VAEVIYPIMEVNGWHYSGVDVAVGGMEQRKIHMLAREL 183
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+YL IK I LQN+ ++ + + DL A + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 93 FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
VA + YP++ + D G +Q++ L REL
Sbjct: 146 VAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 40/244 (16%)
Query: 83 SGVQPTGSIHLGNYLGAIKNW-IALQNSYETLFFIVDLHA---ITLPYDTQQLSKATRET 138
+G +P+G IH+ L + N ++ + + +I D A + + D ++ + R
Sbjct: 45 NGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYF 104
Query: 139 AAIYLACGI--DNSK---ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
++ ACGI D ++ AS F+ S+ +++E M ++ + I + + Q ++
Sbjct: 105 IEVFKACGINLDGTRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRNE--- 160
Query: 194 GENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 250
+ + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 161 SDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRG--------- 211
Query: 251 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-PKDVSHKFFR 309
K+P I + +MSL+ KMSKS P Q I + D ++VS K R
Sbjct: 212 ---------LKIP---ISLSHHMLMSLSGPKKKMSKSDP--QGAIFMDDTEQEVSEKISR 257
Query: 310 RFLT 313
+ T
Sbjct: 258 AYCT 261
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 11/169 (6%)
Query: 80 RIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSK---AT 135
R G +P+G H+ A+ E +F++ D A+ +L K
Sbjct: 42 RCYDGFEPSGRXHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALXNDKVGGELEKIRIVG 101
Query: 136 RETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
R ++ A G D K S + +H + W IG N + + K K G
Sbjct: 102 RYLIEVWKAAGXDXDKVLFLWSSEEITSHADTYW--RXVLDIGRQNTIARIK-KCCTIXG 158
Query: 195 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
+ G A + YP+ DI ++D +G DQ++ L RE + +
Sbjct: 159 KTEGTLTAAQVLYPLXQCCDIFFLKADICQLGLDQRKVNXLAREYCDLI 207
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 77 VKKRIV--SGVQPTGSIHLGNYLGAIKNWIALQ---NSYETLFFIVDLHA---ITLPYDT 128
+K++++ G +P+G +H+ G +K+ I + N +F+I D A + D
Sbjct: 53 LKRKLICYDGFEPSGRMHIAQ--GLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDL 110
Query: 129 QQLSKATRETAAIYLACGIDNSK-----ASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
+++ K ++ +CG++ AS + + L+ +S + I + + +
Sbjct: 111 KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCL 170
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238
+ +S G EN +L YP + +DI D +G DQ++ L RE +
Sbjct: 171 KIMGRSE--GEENYCSQIL-YPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCD 222
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 81 IVSGVQPT-GSIHLGNYL---------GAIKNWIALQNSYETLFFIVDLHAITLPYDTQQ 130
I +G P+ G++HLG+ L A K ++ +Q + + F L +L Y +
Sbjct: 94 IYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKF----LRNRSLSY--AE 147
Query: 131 LSKATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKE 187
+ TRE +ACG D K +F+ S ++ L+ PI L F
Sbjct: 148 VDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSN 207
Query: 188 KSHKAGGENVGVA 200
+ NVG A
Sbjct: 208 DA------NVGYA 214
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 20/191 (10%)
Query: 62 VSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLG--NYLGAIKNWIALQNSYETL-----F 114
V+ E +AS + +K I G +P+G H+G ++ +K+ + + L
Sbjct: 21 VTEEELKGLLASGARIKGYI--GYEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATWHA 78
Query: 115 FIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLL---- 170
+I D L D + A R + A G+ + FV + A + W L
Sbjct: 79 YIND----KLGGDMDLIRAAARIVRRVMEAAGVPVERVR-FVDAEELASDKDYWGLVIRV 133
Query: 171 SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230
+ + + + + +A V + L YP++ SDI D G DQ++
Sbjct: 134 AKRASLARVRRALTIM--GRRAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAH 191
Query: 231 ELTRELAERVN 241
L R++AE++
Sbjct: 192 MLARDVAEKLG 202
>pdb|1R5S|A Chain A, Connexin 43 Carboxyl Terminal Domain
Length = 132
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 30 GLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTG 89
G PSK C +P A NGC S PTAP++ S ++V+G +
Sbjct: 4 GSPSKDCGSP-------KYAYFNGC----------SSPTAPLSPMSPPGYKLVTGDRNNS 46
Query: 90 SIHLGNYLGAIKNWI---ALQNSY-ETLFFIVDLHA--ITLPYDTQQLSK 133
S N + +NW A QN + I + HA P D Q K
Sbjct: 47 SCRNYNKQASEQNWANYSAEQNRMGQAGSTISNSHAQPFDFPDDNQNAKK 96
>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
pdb|2CYC|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
Length = 375
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 60 CNVSLSEPTAPVASSSSVKK--------RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-Y 110
N+ L +PT V + +++ + G + +G IHLG L A Q +
Sbjct: 7 INLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGI 66
Query: 111 ETLFFIVDLHAITLPYDTQQLS---KATRETAAIYLACGIDNS---------KASVFVQS 158
+T F+ D H+ + +L + +E A Y G++ S K + S
Sbjct: 67 KTRVFLADWHS----WINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLAS 122
Query: 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSD 218
+ + + + L+++++ + GE + A L YP++ +DI
Sbjct: 123 EILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIFYQGVT 182
Query: 219 FVPVGEDQKQHLELTRELAERVN 241
G DQ++ + E+A+++
Sbjct: 183 IAHAGMDQRKAHVIAIEVAQKLR 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,343,125
Number of Sequences: 62578
Number of extensions: 303325
Number of successful extensions: 791
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 43
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)