Query 020977
Match_columns 319
No_of_seqs 184 out of 1404
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:38:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 5.7E-77 1.2E-81 582.5 26.6 262 57-318 25-286 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 8.8E-73 1.9E-77 525.3 18.3 231 78-319 13-247 (347)
3 COG0180 TrpS Tryptophanyl-tRNA 100.0 5.7E-72 1.2E-76 533.0 21.3 224 77-317 4-230 (314)
4 PRK12284 tryptophanyl-tRNA syn 100.0 2.9E-70 6.3E-75 539.4 22.7 224 78-317 2-233 (431)
5 PRK00927 tryptophanyl-tRNA syn 100.0 3.7E-69 8E-74 520.7 22.1 226 79-317 2-227 (333)
6 PRK12556 tryptophanyl-tRNA syn 100.0 9.4E-69 2E-73 517.5 22.2 223 78-317 3-233 (332)
7 PRK12283 tryptophanyl-tRNA syn 100.0 1.6E-68 3.5E-73 523.1 23.9 233 79-317 3-295 (398)
8 TIGR00233 trpS tryptophanyl-tR 100.0 2.2E-67 4.9E-72 507.4 21.7 222 77-317 1-224 (328)
9 PRK12282 tryptophanyl-tRNA syn 100.0 5.6E-66 1.2E-70 498.5 22.6 223 78-316 2-226 (333)
10 cd00806 TrpRS_core catalytic c 100.0 5.9E-66 1.3E-70 487.7 21.8 221 80-317 1-223 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 3.2E-62 7E-67 477.5 20.8 211 77-317 65-283 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 2.6E-60 5.7E-65 458.3 18.7 213 77-317 29-246 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 4.9E-59 1.1E-63 457.1 20.3 216 77-317 65-289 (383)
14 PF00579 tRNA-synt_1b: tRNA sy 100.0 6E-56 1.3E-60 419.9 17.6 221 76-317 3-230 (292)
15 cd00395 Tyr_Trp_RS_core cataly 100.0 2.7E-54 5.9E-59 407.0 20.5 206 80-312 1-227 (273)
16 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.5E-54 3.4E-59 448.7 20.1 216 77-316 31-253 (682)
17 cd00805 TyrRS_core catalytic c 100.0 1.5E-54 3.3E-59 407.7 17.4 207 79-315 1-226 (269)
18 PLN02486 aminoacyl-tRNA ligase 100.0 1.6E-49 3.4E-54 389.6 20.7 211 76-317 71-298 (383)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 4.8E-47 1E-51 375.5 19.3 208 77-315 32-263 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 9.7E-45 2.1E-49 359.1 18.4 205 76-311 31-258 (410)
21 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 1E-44 2.2E-49 355.7 17.1 210 78-316 30-262 (377)
22 KOG2144 Tyrosyl-tRNA synthetas 100.0 4.3E-40 9.4E-45 307.3 11.0 212 77-317 33-254 (360)
23 COG0162 TyrS Tyrosyl-tRNA synt 100.0 4.2E-36 9E-41 295.6 14.7 213 78-316 32-264 (401)
24 KOG2145 Cytoplasmic tryptophan 100.0 1.8E-35 3.9E-40 276.7 9.8 209 77-316 84-310 (397)
25 PTZ00348 tyrosyl-tRNA syntheta 100.0 2.4E-32 5.2E-37 283.6 15.1 172 109-315 407-586 (682)
26 KOG2623 Tyrosyl-tRNA synthetas 99.8 1.9E-18 4.1E-23 167.8 13.2 195 78-299 63-286 (467)
27 cd00808 GluRS_core catalytic c 99.7 5.8E-16 1.3E-20 144.0 11.4 171 86-310 9-191 (239)
28 cd00802 class_I_aaRS_core cata 99.5 8.6E-14 1.9E-18 118.6 11.0 63 204-288 78-143 (143)
29 cd00418 GlxRS_core catalytic c 99.2 1.1E-10 2.3E-15 108.3 10.8 168 86-310 9-182 (230)
30 PRK05710 glutamyl-Q tRNA(Asp) 98.8 1.8E-08 4E-13 96.8 9.1 179 86-299 13-248 (299)
31 cd00674 LysRS_core_class_I cat 98.8 9E-08 1.9E-12 94.0 13.9 193 78-299 20-288 (353)
32 PRK01406 gltX glutamyl-tRNA sy 98.7 9.3E-08 2E-12 97.3 11.8 179 86-298 12-262 (476)
33 PRK00750 lysK lysyl-tRNA synth 98.7 1.4E-07 3E-12 96.8 13.1 65 215-305 233-304 (510)
34 PRK14895 gltX glutamyl-tRNA sy 98.7 1.1E-07 2.5E-12 97.2 11.1 179 80-289 4-246 (513)
35 TIGR00464 gltX_bact glutamyl-t 98.6 2.5E-07 5.5E-12 94.0 12.4 189 86-309 9-269 (470)
36 COG0008 GlnS Glutamyl- and glu 98.5 3.7E-07 8E-12 92.7 9.7 178 81-289 10-256 (472)
37 TIGR03838 queuosine_YadB gluta 98.5 1.7E-06 3.8E-11 82.2 12.8 192 86-310 8-254 (272)
38 cd00807 GlnRS_core catalytic c 98.4 1.3E-06 2.8E-11 81.6 9.6 156 86-289 9-170 (238)
39 PLN03233 putative glutamate-tR 98.4 2E-06 4.4E-11 88.2 11.2 175 81-288 12-251 (523)
40 cd09287 GluRS_non_core catalyt 98.4 1.7E-06 3.6E-11 81.0 9.6 158 83-288 6-171 (240)
41 PRK12410 glutamylglutaminyl-tR 98.4 1.8E-06 3.9E-11 86.9 10.0 88 86-182 7-104 (433)
42 PTZ00402 glutamyl-tRNA synthet 98.3 3.2E-06 7E-11 87.9 10.9 178 80-289 52-294 (601)
43 PF00749 tRNA-synt_1c: tRNA sy 98.3 6.4E-06 1.4E-10 79.7 12.0 192 86-310 9-274 (314)
44 PLN02627 glutamyl-tRNA synthet 98.3 1.5E-05 3.2E-10 82.1 14.6 92 84-182 51-159 (535)
45 PRK12558 glutamyl-tRNA synthet 98.3 1.6E-06 3.5E-11 87.6 7.2 172 86-289 10-246 (445)
46 PRK04156 gltX glutamyl-tRNA sy 98.2 1.1E-05 2.5E-10 83.6 12.3 180 79-288 102-343 (567)
47 PLN02907 glutamate-tRNA ligase 98.2 1.1E-05 2.4E-10 86.0 10.8 92 80-180 213-316 (722)
48 cd02156 nt_trans nucleotidyl t 98.1 1.4E-05 2.9E-10 64.8 7.4 56 81-140 2-57 (105)
49 TIGR00467 lysS_arch lysyl-tRNA 98.0 2.5E-05 5.3E-10 80.5 10.5 82 78-162 19-130 (515)
50 PLN02859 glutamine-tRNA ligase 98.0 2.6E-05 5.6E-10 83.3 10.8 176 81-289 265-505 (788)
51 cd00671 ArgRS_core catalytic c 97.8 7.1E-05 1.5E-09 68.2 8.3 155 82-242 6-185 (212)
52 PF01921 tRNA-synt_1f: tRNA sy 97.8 6.6E-05 1.4E-09 74.0 8.2 68 213-305 231-306 (360)
53 PRK01611 argS arginyl-tRNA syn 97.8 0.00016 3.6E-09 74.1 11.2 192 80-303 115-339 (507)
54 COG1384 LysS Lysyl-tRNA synthe 97.7 0.00029 6.3E-09 71.9 11.7 82 77-161 19-132 (521)
55 cd00668 Ile_Leu_Val_MetRS_core 97.6 0.00057 1.2E-08 65.5 11.2 63 87-150 11-100 (312)
56 PRK05347 glutaminyl-tRNA synth 97.6 0.00022 4.7E-09 73.9 8.6 92 81-180 30-133 (554)
57 TIGR00440 glnS glutaminyl-tRNA 97.5 0.00026 5.7E-09 72.9 7.8 89 86-182 8-106 (522)
58 PTZ00437 glutaminyl-tRNA synth 97.5 0.00026 5.5E-09 73.5 7.6 93 80-181 51-155 (574)
59 PRK00260 cysS cysteinyl-tRNA s 97.5 0.0013 2.9E-08 66.9 12.2 74 77-150 22-110 (463)
60 TIGR00463 gltX_arch glutamyl-t 97.4 0.00034 7.4E-09 72.7 7.7 93 79-180 92-196 (560)
61 PRK14703 glutaminyl-tRNA synth 97.4 0.00036 7.8E-09 75.0 8.0 95 80-182 31-137 (771)
62 cd00812 LeuRS_core catalytic c 97.3 0.001 2.2E-08 64.2 8.7 64 87-150 11-87 (314)
63 cd00672 CysRS_core catalytic c 97.2 0.0054 1.2E-07 56.3 11.9 71 79-149 22-105 (213)
64 TIGR00435 cysS cysteinyl-tRNA 96.2 0.083 1.8E-06 54.0 13.3 73 79-151 23-108 (465)
65 PRK00133 metG methionyl-tRNA s 94.3 0.13 2.9E-06 54.7 7.8 84 77-163 2-99 (673)
66 KOG1149 Glutamyl-tRNA syntheta 93.7 0.11 2.5E-06 52.6 5.5 95 80-181 35-146 (524)
67 COG0143 MetG Methionyl-tRNA sy 93.1 0.33 7.1E-06 50.9 7.9 76 86-164 15-103 (558)
68 PF09334 tRNA-synt_1g: tRNA sy 92.8 0.46 1E-05 47.5 8.3 74 86-163 9-96 (391)
69 PLN02224 methionine-tRNA ligas 92.5 0.58 1.3E-05 49.6 8.9 73 78-150 70-156 (616)
70 PRK00390 leuS leucyl-tRNA synt 92.0 0.65 1.4E-05 50.7 8.8 72 78-150 33-119 (805)
71 KOG1147 Glutamyl-tRNA syntheta 92.0 0.38 8.1E-06 50.1 6.5 73 80-161 200-276 (712)
72 PRK12268 methionyl-tRNA synthe 90.6 0.74 1.6E-05 47.7 7.3 71 80-151 5-92 (556)
73 PLN02610 probable methionyl-tR 89.8 0.81 1.8E-05 50.0 7.1 85 78-165 18-117 (801)
74 PRK14536 cysS cysteinyl-tRNA s 88.8 2.9 6.2E-05 43.3 9.8 75 75-150 20-119 (490)
75 PRK11893 methionyl-tRNA synthe 87.8 2.3 5E-05 43.3 8.5 65 87-151 12-89 (511)
76 TIGR00398 metG methionyl-tRNA 87.7 1.1 2.3E-05 46.2 6.0 65 87-151 10-87 (530)
77 cd00814 MetRS_core catalytic c 87.6 1.2 2.5E-05 43.1 5.8 65 87-151 11-88 (319)
78 TIGR00396 leuS_bact leucyl-tRN 87.4 1.5 3.2E-05 48.2 7.0 72 79-150 31-116 (842)
79 PLN02563 aminoacyl-tRNA ligase 87.4 3.8 8.3E-05 45.8 10.3 74 78-151 111-201 (963)
80 PRK12267 methionyl-tRNA synthe 87.0 1.6 3.6E-05 46.2 7.0 65 87-151 15-92 (648)
81 TIGR00456 argS arginyl-tRNA sy 86.9 0.55 1.2E-05 49.1 3.3 66 218-310 330-396 (566)
82 PRK05743 ileS isoleucyl-tRNA s 86.9 0.53 1.2E-05 52.0 3.4 58 214-297 543-603 (912)
83 cd00817 ValRS_core catalytic c 86.6 0.56 1.2E-05 46.6 3.1 62 87-148 12-102 (382)
84 cd00818 IleRS_core catalytic c 86.4 1.3 2.7E-05 43.4 5.3 36 87-122 12-52 (338)
85 PRK11893 methionyl-tRNA synthe 86.1 0.41 8.9E-06 48.8 1.9 60 215-299 253-312 (511)
86 cd00818 IleRS_core catalytic c 83.6 0.95 2.1E-05 44.2 3.1 59 215-299 251-312 (338)
87 PLN02946 cysteine-tRNA ligase 83.2 10 0.00023 39.9 10.6 73 76-149 78-165 (557)
88 cd00817 ValRS_core catalytic c 83.0 3 6.4E-05 41.5 6.4 60 215-299 295-356 (382)
89 PF00133 tRNA-synt_1: tRNA syn 81.6 1.1 2.4E-05 47.2 2.9 59 215-297 513-572 (601)
90 PRK12418 cysteinyl-tRNA synthe 81.3 1.2 2.5E-05 44.7 2.8 70 205-298 203-273 (384)
91 PRK14900 valS valyl-tRNA synth 80.9 1.2 2.5E-05 50.2 2.9 61 215-299 490-551 (1052)
92 TIGR00392 ileS isoleucyl-tRNA 80.9 1.3 2.9E-05 48.4 3.3 14 215-228 563-576 (861)
93 COG0495 LeuS Leucyl-tRNA synth 80.2 3.2 6.9E-05 45.5 5.8 73 77-151 34-124 (814)
94 PRK12300 leuS leucyl-tRNA synt 79.0 1.4 3.1E-05 48.6 2.8 57 215-297 529-588 (897)
95 PTZ00419 valyl-tRNA synthetase 78.8 2.7 5.9E-05 47.0 4.9 45 78-122 61-111 (995)
96 cd00814 MetRS_core catalytic c 78.6 1.4 3.1E-05 42.4 2.4 59 216-299 235-293 (319)
97 PRK05729 valS valyl-tRNA synth 78.6 1.4 3.1E-05 48.4 2.6 60 214-298 471-532 (874)
98 PLN02843 isoleucyl-tRNA synthe 78.4 3.5 7.7E-05 46.0 5.6 74 78-151 33-136 (974)
99 PRK13208 valS valyl-tRNA synth 76.5 3.6 7.7E-05 44.8 4.9 70 78-147 39-135 (800)
100 TIGR03447 mycothiol_MshC cyste 75.3 2 4.4E-05 43.5 2.4 72 77-148 35-120 (411)
101 TIGR00395 leuS_arch leucyl-tRN 74.8 2.1 4.6E-05 47.5 2.7 60 215-298 572-632 (938)
102 PRK13208 valS valyl-tRNA synth 74.8 2.9 6.3E-05 45.5 3.6 60 215-298 485-545 (800)
103 PLN02959 aminoacyl-tRNA ligase 73.5 2.9 6.4E-05 47.2 3.4 61 214-298 669-730 (1084)
104 TIGR00422 valS valyl-tRNA synt 73.4 5 0.00011 44.1 5.1 45 78-122 34-84 (861)
105 PLN02286 arginine-tRNA ligase 73.4 4.4 9.4E-05 42.7 4.4 67 218-304 330-396 (576)
106 PLN02943 aminoacyl-tRNA ligase 73.2 3 6.5E-05 46.5 3.3 59 215-298 535-595 (958)
107 COG0018 ArgS Arginyl-tRNA synt 72.8 4.1 8.9E-05 43.0 4.1 69 217-308 336-405 (577)
108 PRK12267 methionyl-tRNA synthe 72.7 2.1 4.6E-05 45.4 2.0 59 216-299 254-312 (648)
109 PRK13804 ileS isoleucyl-tRNA s 72.1 2.7 5.9E-05 46.9 2.7 16 213-228 580-595 (961)
110 TIGR00422 valS valyl-tRNA synt 71.8 3.2 6.9E-05 45.6 3.1 59 215-298 477-537 (861)
111 PF01406 tRNA-synt_1e: tRNA sy 71.4 2.8 6E-05 40.8 2.3 74 76-150 6-94 (300)
112 PTZ00419 valyl-tRNA synthetase 71.1 4.3 9.4E-05 45.4 4.0 59 214-297 536-596 (995)
113 KOG1148 Glutaminyl-tRNA synthe 70.2 9.3 0.0002 40.6 5.8 100 79-186 247-357 (764)
114 PLN02843 isoleucyl-tRNA synthe 70.1 3.6 7.7E-05 46.0 3.0 16 213-228 561-576 (974)
115 COG0018 ArgS Arginyl-tRNA synt 69.4 4.7 0.0001 42.6 3.6 43 81-123 122-170 (577)
116 cd02168 NMNAT_Nudix Nicotinami 69.1 14 0.00031 33.0 6.2 67 85-160 8-77 (181)
117 PLN02660 pantoate--beta-alanin 68.4 18 0.00039 35.0 7.1 67 215-311 145-211 (284)
118 PF00750 tRNA-synt_1d: tRNA sy 67.7 6.3 0.00014 38.8 4.0 71 217-308 240-310 (354)
119 PRK12268 methionyl-tRNA synthe 66.9 3.6 7.9E-05 42.6 2.2 57 218-298 289-346 (556)
120 TIGR00456 argS arginyl-tRNA sy 65.1 6.3 0.00014 41.3 3.5 42 79-120 115-162 (566)
121 TIGR00398 metG methionyl-tRNA 65.1 5.7 0.00012 40.9 3.2 55 219-299 285-340 (530)
122 PRK06039 ileS isoleucyl-tRNA s 64.9 4.5 9.7E-05 45.2 2.5 15 214-228 543-557 (975)
123 COG0525 ValS Valyl-tRNA synthe 64.6 4.2 9.2E-05 44.8 2.2 37 87-123 44-84 (877)
124 PLN02381 valyl-tRNA synthetase 64.2 6 0.00013 44.7 3.3 59 214-297 606-666 (1066)
125 PTZ00399 cysteinyl-tRNA-synthe 64.0 3.9 8.5E-05 43.8 1.8 69 205-298 257-327 (651)
126 PRK12451 arginyl-tRNA syntheta 63.5 8.2 0.00018 40.5 4.0 63 217-303 326-388 (562)
127 PRK14534 cysS cysteinyl-tRNA s 62.2 18 0.0004 37.4 6.2 72 78-150 21-117 (481)
128 PLN02563 aminoacyl-tRNA ligase 61.7 5.9 0.00013 44.3 2.7 28 214-241 614-642 (963)
129 PRK14536 cysS cysteinyl-tRNA s 61.5 5.6 0.00012 41.2 2.3 73 200-297 217-290 (490)
130 PRK14535 cysS cysteinyl-tRNA s 61.4 53 0.0011 35.7 9.5 78 73-151 243-335 (699)
131 PRK12451 arginyl-tRNA syntheta 61.4 7.3 0.00016 40.9 3.2 39 81-119 118-162 (562)
132 PLN02882 aminoacyl-tRNA ligase 61.4 7.9 0.00017 44.2 3.7 59 215-296 566-624 (1159)
133 PRK14900 valS valyl-tRNA synth 61.0 5.2 0.00011 45.1 2.1 45 78-122 49-99 (1052)
134 PF00133 tRNA-synt_1: tRNA syn 60.8 10 0.00022 40.1 4.1 46 78-123 24-75 (601)
135 PRK05729 valS valyl-tRNA synth 60.1 5.3 0.00011 44.0 2.0 44 79-122 38-87 (874)
136 PLN02946 cysteine-tRNA ligase 60.0 4.7 0.0001 42.5 1.5 73 200-297 261-334 (557)
137 PLN02286 arginine-tRNA ligase 59.6 6.7 0.00014 41.3 2.5 39 82-120 123-167 (576)
138 COG0495 LeuS Leucyl-tRNA synth 59.1 7.8 0.00017 42.6 3.0 66 215-298 525-591 (814)
139 PF02662 FlpD: Methyl-viologen 59.1 44 0.00095 28.1 7.0 73 81-159 30-103 (124)
140 KOG0435 Leucyl-tRNA synthetase 58.8 6.3 0.00014 42.4 2.2 77 74-151 54-147 (876)
141 PLN02381 valyl-tRNA synthetase 57.9 6.7 0.00015 44.3 2.4 45 78-122 129-179 (1066)
142 TIGR00396 leuS_bact leucyl-tRN 57.7 7.3 0.00016 42.9 2.6 25 215-239 519-544 (842)
143 cd02166 NMNAT_Archaea Nicotina 56.2 57 0.0012 28.4 7.5 67 85-160 8-77 (163)
144 PLN02224 methionine-tRNA ligas 55.6 9.3 0.0002 40.7 2.8 59 215-298 320-378 (616)
145 PRK13804 ileS isoleucyl-tRNA s 55.3 7.7 0.00017 43.4 2.3 45 78-122 55-105 (961)
146 PRK05743 ileS isoleucyl-tRNA s 53.7 8.1 0.00017 42.9 2.1 73 79-151 51-152 (912)
147 TIGR00392 ileS isoleucyl-tRNA 52.3 8.8 0.00019 42.2 2.1 46 77-122 36-87 (861)
148 PRK00133 metG methionyl-tRNA s 52.2 11 0.00023 40.4 2.7 31 260-298 311-341 (673)
149 KOG0436 Methionyl-tRNA synthet 51.9 81 0.0017 32.6 8.5 65 87-151 50-127 (578)
150 PLN02943 aminoacyl-tRNA ligase 50.1 19 0.00041 40.4 4.2 44 79-122 90-139 (958)
151 TIGR03447 mycothiol_MshC cyste 49.5 79 0.0017 32.2 8.2 69 205-297 230-299 (411)
152 PRK00390 leuS leucyl-tRNA synt 47.9 13 0.00028 40.7 2.6 25 215-239 522-547 (805)
153 TIGR00395 leuS_arch leucyl-tRN 47.6 9 0.0002 42.7 1.3 45 78-122 26-76 (938)
154 PF00750 tRNA-synt_1d: tRNA sy 47.6 8.1 0.00018 38.0 0.8 42 81-122 25-72 (354)
155 COG0060 IleS Isoleucyl-tRNA sy 46.8 28 0.00061 38.9 4.9 26 273-307 594-619 (933)
156 TIGR00018 panC pantoate--beta- 46.6 53 0.0012 31.7 6.2 27 215-241 142-168 (282)
157 COG0215 CysS Cysteinyl-tRNA sy 44.9 8.3 0.00018 39.7 0.5 71 205-299 210-281 (464)
158 PRK14534 cysS cysteinyl-tRNA s 43.4 14 0.00029 38.4 1.7 66 208-298 225-291 (481)
159 PF09334 tRNA-synt_1g: tRNA sy 42.5 4.7 0.0001 40.3 -1.7 55 219-298 285-339 (391)
160 PLN02610 probable methionyl-tR 41.6 9.9 0.00021 41.7 0.4 57 219-298 304-360 (801)
161 PTZ00427 isoleucine-tRNA ligas 41.5 25 0.00054 40.5 3.5 32 199-230 654-687 (1205)
162 PLN02959 aminoacyl-tRNA ligase 40.9 14 0.00031 41.8 1.6 36 87-122 56-96 (1084)
163 PF01406 tRNA-synt_1e: tRNA sy 38.9 2.1E+02 0.0046 28.0 9.0 70 205-299 195-265 (300)
164 PTZ00427 isoleucine-tRNA ligas 38.2 22 0.00047 40.9 2.5 45 78-122 103-153 (1205)
165 PTZ00399 cysteinyl-tRNA-synthe 37.7 2E+02 0.0043 31.1 9.4 73 76-151 58-149 (651)
166 PRK06039 ileS isoleucyl-tRNA s 36.4 22 0.00047 39.9 2.1 45 78-122 42-92 (975)
167 PLN02882 aminoacyl-tRNA ligase 34.2 27 0.0006 40.0 2.4 45 78-122 39-89 (1159)
168 KOG2007 Cysteinyl-tRNA synthet 31.6 26 0.00055 36.7 1.5 32 200-231 242-274 (586)
169 PRK01153 nicotinamide-nucleoti 30.0 2.2E+02 0.0047 25.2 7.0 26 85-117 9-35 (174)
170 COG0525 ValS Valyl-tRNA synthe 29.8 18 0.0004 40.0 0.1 19 273-296 517-535 (877)
171 KOG0432 Valyl-tRNA synthetase 29.4 42 0.00091 37.4 2.7 36 88-123 87-126 (995)
172 PRK05379 bifunctional nicotina 28.9 1.9E+02 0.0042 28.2 7.1 34 79-118 8-42 (340)
173 PRK12418 cysteinyl-tRNA synthe 28.5 2.1E+02 0.0047 28.8 7.4 73 78-150 9-96 (384)
174 PRK14535 cysS cysteinyl-tRNA s 28.5 19 0.00042 38.9 0.0 36 202-239 432-468 (699)
175 COG4320 Uncharacterized protei 26.1 46 0.00099 33.1 2.1 27 88-120 62-88 (410)
176 COG0143 MetG Methionyl-tRNA sy 25.1 28 0.0006 36.8 0.5 31 261-299 316-346 (558)
177 COG1908 FrhD Coenzyme F420-red 24.6 4.6E+02 0.0099 22.6 9.0 90 60-159 11-104 (132)
178 PF01467 CTP_transf_2: Cytidyl 24.5 3.5E+02 0.0075 21.8 7.0 33 90-123 8-40 (157)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.7e-77 Score=582.50 Aligned_cols=262 Identities=76% Similarity=1.143 Sum_probs=236.3
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHH
Q 020977 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (319)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~ 136 (319)
+|+++.++..+.++.+++.-.++++|+||||||.+|||||+|++++|++||++++++|+||||||+|.++++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 34444443444444444444567899999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCCCCCCcEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccC
Q 020977 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 216 (319)
Q Consensus 137 ~~~~~~lA~GlDp~k~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~ 216 (319)
+++++|+||||||+|++||+||++++|.+|+|+|+|.+++++|+|++|||++.+..+.+++++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999998776546789999999999999999999
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020977 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~ 296 (319)
+|+||||+||+||+|||||||+|||+.||.+.++++|++.+.+|++|++++++.+++||||+||.+|||||+|+++|+|+
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence 99999999999999999999999999998655566676667789999999987668999998888899999997779999
Q ss_pred cCCCHHHHHHhhhccccCCCCC
Q 020977 297 LLDPKDVSHKFFRRFLTFLMNL 318 (319)
Q Consensus 297 L~Dspe~I~kKI~~A~Td~~~~ 318 (319)
|+|+||+|++|||+|+||+...
T Consensus 265 L~Ds~e~I~kKI~~a~TD~~~~ 286 (389)
T PLN02886 265 LLDPPDVIANKIKRCKTDSFPG 286 (389)
T ss_pred ecCCHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999998753
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-73 Score=525.29 Aligned_cols=231 Identities=56% Similarity=0.808 Sum_probs=220.2
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccC----cEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY----ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~----~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~ 153 (319)
+.++|+||||||.+|||||+|++++|++||+.+ .++|+|+|+||+|.|+++.++|+++.++++.++|||+||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 789999999999999999999999999999854 3799999999999999999999999999999999999999999
Q ss_pred EEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHH
Q 020977 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (319)
Q Consensus 154 if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLa 233 (319)
+|+||++++|.|+.|+|+|.++++||+||+|||++..+++..++++|+|+||+|||||||+|+++.||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999987666789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcccc
Q 020977 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313 (319)
Q Consensus 234 Rdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~T 313 (319)
|++|++||+.||++ +|++|+.++...++++++|.||.+|||||+|++.++|+|+|+|++|.+||++|.|
T Consensus 173 r~lA~~fN~~Y~~~-----------~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGTE-----------IFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccCe-----------eecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 99999999999976 4999999998755999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020977 314 FLMNLV 319 (319)
Q Consensus 314 d~~~~~ 319 (319)
|....|
T Consensus 242 D~~~~v 247 (347)
T KOG2713|consen 242 DNTSGV 247 (347)
T ss_pred ccccce
Confidence 976643
No 3
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-72 Score=533.01 Aligned_cols=224 Identities=55% Similarity=0.852 Sum_probs=212.2
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEeccceecCCCCH--HHHHHHHHHHHHHHHHcCCCCCCcE
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKAS 153 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g-~~~~ilIaDlhA~t~~~~~--~~i~~~~~~~~~~~lA~GlDp~k~~ 153 (319)
.+++||||++|||.||||||+|++++|+.+|++ ++++|+|||+||+|.+.++ +.+++++++++++|+|+||||+|++
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~ 83 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST 83 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE
Confidence 578999999999999999999999999999998 5999999999999998766 8999999999999999999999999
Q ss_pred EEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHH
Q 020977 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (319)
Q Consensus 154 if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLa 233 (319)
||+||++++|.||+|+|+|.+++++|+|+++||++..+.+ +++++|+|.||+|||||||+|++++||||.||+||+||+
T Consensus 84 if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleLt 162 (314)
T COG0180 84 IFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELT 162 (314)
T ss_pred EEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHHH
Confidence 9999999999999999999999999999999999987765 689999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcccc
Q 020977 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313 (319)
Q Consensus 234 Rdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~T 313 (319)
||||+|||+.||. +|++|+++++.. +++|||+++ +|||||+| +|+|+|+|+|++|++||++|.|
T Consensus 163 RDiA~rfn~~y~~------------~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~--ns~I~L~D~~~~i~kKI~~~~t 226 (314)
T COG0180 163 RDIARRFNHLYGE------------VFPLPEALISKV-ARLPGLDGP-GKMSKSDP--NSAIFLLDDPKTIRKKIKKAAT 226 (314)
T ss_pred HHHHHHHHhhcCC------------ccCCccccccCC-CcccCCCCC-CcccccCC--CCeeeccCCHHHHHHHHHHhcc
Confidence 9999999999984 499999999976 799999666 99999998 4899999999999999999999
Q ss_pred CCCC
Q 020977 314 FLMN 317 (319)
Q Consensus 314 d~~~ 317 (319)
|+.+
T Consensus 227 d~~~ 230 (314)
T COG0180 227 DGPT 230 (314)
T ss_pred CCCC
Confidence 9943
No 4
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.9e-70 Score=539.41 Aligned_cols=224 Identities=39% Similarity=0.645 Sum_probs=208.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~--g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
..+|||||||||.+|||||+|++++|+++|+ +++++|+||||||+|++.+++++++++++++++|+||||||+|++||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 4589999999999999999999999999976 89999999999999988899999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhh---C---CCCcccccccchHHHhhhhhccCCCEEEecCcchHH
Q 020977 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (319)
Q Consensus 156 ~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~---~---~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~h 229 (319)
+||++++|.||+|+|+|.+++++|+|+++||++..+. + .+++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 9999999999999999999999999999999875432 1 245899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020977 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 leLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
+|||||||+|||+.||.+ +|++|+.++...+++|||| +| +|||||+ +|+|+|+|+|++|++|||
T Consensus 162 lELaRdIA~rFN~~yg~~-----------~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 162 IEMARDIAQRFNHLYGGE-----------FFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIF 225 (431)
T ss_pred HHHHHHHHHHHhhhcCCc-----------ccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHh
Confidence 999999999999999754 3899999987666899999 66 6999998 489999999999999999
Q ss_pred ccccCCCC
Q 020977 310 RFLTFLMN 317 (319)
Q Consensus 310 ~A~Td~~~ 317 (319)
+|+||+.+
T Consensus 226 ~A~TDs~~ 233 (431)
T PRK12284 226 SIVTDSRA 233 (431)
T ss_pred cCCCCCCC
Confidence 99999864
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-69 Score=520.67 Aligned_cols=226 Identities=60% Similarity=0.965 Sum_probs=212.0
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QS 158 (319)
+++|+||+|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|||+||+|++||+||
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS 81 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS 81 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence 68999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHH
Q 020977 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (319)
Q Consensus 159 d~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia~ 238 (319)
+|++|.+++|+++|.+++++|+|+++||++.++.+ +++++|+|+||+|||||||++++|+||||+||+||+|||||+|+
T Consensus 82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~ 160 (333)
T PRK00927 82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR 160 (333)
T ss_pred CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999998865433 67899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020977 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 239 r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+||+.||. +|++|+++++..+++||||+++.+|||||+|++.|+|+|+|+|++|++|||+|+||+.+
T Consensus 161 ~~n~~~~~------------~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~ 227 (333)
T PRK00927 161 RFNNLYGE------------VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER 227 (333)
T ss_pred Hhhhhccc------------cCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCc
Confidence 99999874 48899999976668999996555699999986669999999999999999999999864
No 6
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.4e-69 Score=517.53 Aligned_cols=223 Identities=39% Similarity=0.627 Sum_probs=205.3
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhcc--CcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g--~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
+.++||||||||.+|||||+|++++|+++|+. ++++|+||||||+|.+++++++++++++++++|+||||||+|++||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 46899999999999999999999999999874 4599999999999878899999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC------CCCcccccccchHHHhhhhhccCCCEEEecCcchHH
Q 020977 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (319)
Q Consensus 156 ~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~------~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~h 229 (319)
+||++++|.+|+|+++|.++++||+||++||++..... ++++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999999865321 235799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020977 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 leLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
+|||||+|+|||+.||. .|++|+.++++..+++||| +| +|||||++ |+|+|+|+|++|++||+
T Consensus 163 leLtRdiA~rfn~~yg~------------~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFGD------------TFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhccc------------cCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCHHHHHHHHH
Confidence 99999999999999985 3889999876555889999 77 69999984 78999999999999999
Q ss_pred ccccCCCC
Q 020977 310 RFLTFLMN 317 (319)
Q Consensus 310 ~A~Td~~~ 317 (319)
+|+||++.
T Consensus 226 ka~Td~~~ 233 (332)
T PRK12556 226 KIKTDSSL 233 (332)
T ss_pred HhccCCCc
Confidence 99999864
No 7
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-68 Score=523.08 Aligned_cols=233 Identities=40% Similarity=0.687 Sum_probs=211.4
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
.+||+||||||.+|||||+|++++|+++|++++++|+||||||+|++ .+++++++++++++++|+|||+||+|++||+|
T Consensus 3 ~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~Q 82 (398)
T PRK12283 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQ 82 (398)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 57999999999999999999999999999999999999999999985 49999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHH
Q 020977 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdi 236 (319)
|++++|++|+|+|+|.+++++|+|+++||++..+.. .++.++|+++||+|||||||+|++|+||||+||+||+||||||
T Consensus 83 S~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRdI 162 (398)
T PRK12283 83 SKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREI 162 (398)
T ss_pred CCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHHH
Confidence 999999999999999999999999999999876531 3568999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCccc----------------------------------------------------------cccCCCCCc
Q 020977 237 AERVNYLYGGRKW----------------------------------------------------------KKLGGRGGA 258 (319)
Q Consensus 237 a~r~n~~~g~~~~----------------------------------------------------------~~~~~~~~~ 258 (319)
|+|||+.||.+.+ ....+.++.
T Consensus 163 A~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (398)
T PRK12283 163 ARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKI 242 (398)
T ss_pred HHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCc
Confidence 9999999985210 001223445
Q ss_pred cccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020977 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 259 ~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|++|+++++.. ++|||| || +|||||+ +|+|+|+|+|++|++|||+|+||+..
T Consensus 243 ~~~~P~~~~~~~-~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~ 295 (398)
T PRK12283 243 ILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPAR 295 (398)
T ss_pred ccCCCcccccCC-CcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcc
Confidence 799999998664 999999 88 8999996 48999999999999999999999864
No 8
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=2.2e-67 Score=507.35 Aligned_cols=222 Identities=49% Similarity=0.683 Sum_probs=207.9
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~--~~~~i~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++++|+|++|||.+|||||+|+++.|..+|.+++++|+||||||+|++. +++.+++++++++++|+||||||+|++|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 36799999999999999999999999998888999999999999999866 8899999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHH
Q 020977 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaR 234 (319)
|+||++++|+++.|+|+|.++++||+|+.+||++.. .+++++|+|+||+|||||||+|++|+||||+||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998752 25689999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccC
Q 020977 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTF 314 (319)
Q Consensus 235 dia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td 314 (319)
|+|+|||+.||. +|++|++++++..++|||| +| +|||||+| +|+|+|+|+||+|++||++|+||
T Consensus 158 dia~r~n~~~~~------------~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~--~s~I~L~D~~e~I~~KI~~a~td 221 (328)
T TIGR00233 158 DLAERFNKKFKN------------FFPKPESLISKFFPRLMGL-SG-KKMSKSDP--NSAIFLTDTPKQIKKKIRKAATD 221 (328)
T ss_pred HHHHHhhhhcCc------------ccCCChhhhccccCCCCCC-CC-CcCCCCCC--CCeEeecCCHHHHHHHHHhcCCC
Confidence 999999999974 4889999998766889998 56 79999997 48999999999999999999999
Q ss_pred CCC
Q 020977 315 LMN 317 (319)
Q Consensus 315 ~~~ 317 (319)
+.+
T Consensus 222 ~~~ 224 (328)
T TIGR00233 222 GGR 224 (328)
T ss_pred CCC
Confidence 974
No 9
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=5.6e-66 Score=498.49 Aligned_cols=223 Identities=37% Similarity=0.566 Sum_probs=207.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
+.++|||++|||.+|||||++++.+|++||+.++++|+||||||+++ +.+++++++++++++++|+|+|+||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 45899999999999999999999999999997789999999999997 68999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHH
Q 020977 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (319)
Q Consensus 157 QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRd 235 (319)
||+|++|.++.|++++.++++|++|+.+||++....+ ++++++|+|+||+||||||++|++|+||||+||+||+||+||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998755443 367899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCC
Q 020977 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFL 315 (319)
Q Consensus 236 ia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~ 315 (319)
+|+|||+.||++ +|..|++++.. +++|||| +|.+|||||++ ++|+|+|+||+|++||++|+||+
T Consensus 162 iA~~~n~~~~~~-----------~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGTD-----------VLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCCc-----------cccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHHHHhCcCCC
Confidence 999999998754 48889988865 4899999 77789999984 79999999999999999999996
Q ss_pred C
Q 020977 316 M 316 (319)
Q Consensus 316 ~ 316 (319)
.
T Consensus 226 ~ 226 (333)
T PRK12282 226 N 226 (333)
T ss_pred C
Confidence 3
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=5.9e-66 Score=487.75 Aligned_cols=221 Identities=50% Similarity=0.789 Sum_probs=209.1
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020977 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
++|+|++|||.+|||||++++.+|++||+ +++++|+|||+||+|++. +++++++++++++++|+|+|+||+|++||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 58999999999999999999999999999 999999999999999976 9999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHH
Q 020977 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia 237 (319)
|++++|.++.|+|+|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||.||+||+||+||+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999998653 36789999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020977 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 238 ~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|||+.||. .|++|++++++ +++||||++|.+|||||++ +|+|+|+|+|++|++|||+|+||+.+
T Consensus 159 ~r~n~~~~~------------~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYGE------------IFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhcccccc------------ccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 999999874 48999999986 4899999777689999997 59999999999999999999999875
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-62 Score=477.50 Aligned_cols=211 Identities=27% Similarity=0.344 Sum_probs=198.6
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++++|||++|||.||||||++ +.+|++||+ |++++|+|||+||+++ ..+++++++++++++++|+|||+||+|++|
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i 143 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEI 143 (368)
T ss_pred CCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 5789999999999999999986 789999999 7999999999999998 679999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhc------cCCCEEEecCcchH
Q 020977 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQKQ 228 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~------~~adlvpvG~DQ~~ 228 (319)
|+||+++++.++.|.++|.+++++|+|+.+|+ +++++|+++||+|||||||+ +++|+||||+||+|
T Consensus 144 ~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~ 215 (368)
T PRK12285 144 YFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDP 215 (368)
T ss_pred EECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchHH
Confidence 99999999999999999999999999998874 46799999999999999999 78999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhh
Q 020977 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFF 308 (319)
Q Consensus 229 hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI 308 (319)
|+|||||+|+|||+.|| |++|+++++ +++||| +| +|||||+| +|+|+|+|+|++|++||
T Consensus 216 h~~ltRdiA~r~n~~~g--------------f~~P~~l~~---~~lpgL-~G-~KMSkS~~--~s~I~L~D~p~~I~kKI 274 (368)
T PRK12285 216 HIRLTRDIAERLHGGYG--------------FIKPSSTYH---KFMPGL-TG-GKMSSSKP--ESAIYLTDDPETVKKKI 274 (368)
T ss_pred HHHHHHHHHHHHhhhcC--------------CCCchhHhh---hcccCC-CC-CcCCCCCC--CCeeeccCCHHHHHHHH
Confidence 99999999999999987 678999997 679999 56 79999998 69999999999999999
Q ss_pred hccccCCCC
Q 020977 309 RRFLTFLMN 317 (319)
Q Consensus 309 ~~A~Td~~~ 317 (319)
|+|+||+..
T Consensus 275 ~kA~Td~~~ 283 (368)
T PRK12285 275 MKALTGGRA 283 (368)
T ss_pred HhCcCCCCc
Confidence 999999764
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.6e-60 Score=458.32 Aligned_cols=213 Identities=24% Similarity=0.370 Sum_probs=192.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++++|+||+|||.+||||++ .+.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|++|
T Consensus 29 ~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i 107 (329)
T PRK08560 29 EEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEF 107 (329)
T ss_pred CCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEE
Confidence 578999999999999999987 5789999999 99999999999999995 69999999999999999999999999999
Q ss_pred EEcccchhhhH---HHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHH
Q 020977 155 FVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (319)
Q Consensus 155 f~QSd~~~~~e---l~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hle 231 (319)
|+||+|++|.+ +.|.++|.+++++++|+.+++.+ . . ++.++|+|+||+|||||||+|++|+||||.||+||++
T Consensus 108 ~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~ 183 (329)
T PRK08560 108 VLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM 183 (329)
T ss_pred EecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHH
Confidence 99999998875 34449999999999999887642 2 1 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcc
Q 020977 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRF 311 (319)
Q Consensus 232 LaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A 311 (319)
|+||+|+|||+ .+|.+++. ++||||+++.+|||||+| +|+|+|+|+|++|++|||+|
T Consensus 184 l~Rdia~~~n~------------------~~p~~l~~---~~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~kA 240 (329)
T PRK08560 184 LAREVLPKLGY------------------KKPVCIHT---PLLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKKA 240 (329)
T ss_pred HHHHhhHhcCC------------------CCceEEEc---CccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHHhc
Confidence 99999999993 35888876 679999665569999997 69999999999999999999
Q ss_pred ccCCCC
Q 020977 312 LTFLMN 317 (319)
Q Consensus 312 ~Td~~~ 317 (319)
+||+.+
T Consensus 241 ~t~~~~ 246 (329)
T PRK08560 241 YCPPGE 246 (329)
T ss_pred cCCCCC
Confidence 999964
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.9e-59 Score=457.06 Aligned_cols=216 Identities=21% Similarity=0.299 Sum_probs=192.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||++||||++..+.+|++||+ |++++|+||||||++++ .++++++++++|++++|+|+|+||+|+
T Consensus 65 ~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~ 144 (383)
T PTZ00126 65 ERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNV 144 (383)
T ss_pred CCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 67899999999999999996544458999999 89999999999999984 689999999999999999999999999
Q ss_pred EEEEccc-chhhhHHHHHHhc----cCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcch
Q 020977 153 SVFVQSH-VRAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (319)
Q Consensus 153 ~if~QSd-~~~~~el~w~L~~----~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~ 227 (319)
+||+||+ +++|.+++|.+.+ .++++|++|+.+++++.. .++.++|+|+||+||||||++|++|+||||.||+
T Consensus 145 ~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ~ 221 (383)
T PTZ00126 145 RFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQR 221 (383)
T ss_pred EEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccHH
Confidence 9999998 5689999998665 469999999999875432 2467899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020977 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 228 ~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
+|++||||+|++||+.| .|..+++ ++||||+||.+|||||+| +++|+|+|+|++|++|
T Consensus 222 ~~~~LaRdia~~~~~~~-----------------~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I~kK 279 (383)
T PTZ00126 222 KVNMLAREYCDKKKIKK-----------------KPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDVNRK 279 (383)
T ss_pred HHHHHHHHHHHHhCCCC-----------------Cceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHHHHH
Confidence 99999999999999532 3555543 789999888899999998 5899999999999999
Q ss_pred hhccccCCCC
Q 020977 308 FRRFLTFLMN 317 (319)
Q Consensus 308 I~~A~Td~~~ 317 (319)
||+|+||+..
T Consensus 280 I~kA~t~p~~ 289 (383)
T PTZ00126 280 IKKAYCPPGV 289 (383)
T ss_pred HHhCcCCCCC
Confidence 9999999853
No 14
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=6e-56 Score=419.86 Aligned_cols=221 Identities=36% Similarity=0.569 Sum_probs=199.7
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHH--HHHcCCCC
Q 020977 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGIDN 149 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~---~~~~i~~~~~~~~~~--~lA~GlDp 149 (319)
.+++++|+||+|||.|||||++ .+.+|++||+ |++++|+|||+||++++. +++.+++++++++.. ++|+|+||
T Consensus 3 ~~~~~~y~G~~PTg~lHlG~l~-~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~ 81 (292)
T PF00579_consen 3 NKPFRVYTGIDPTGDLHLGHLV-PIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDP 81 (292)
T ss_dssp HSSEEEEEEEESSSS-BHHHHH-HHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHT
T ss_pred CCCcEEEEeECCCCcccchHHH-HHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4689999999999999999654 5789999996 899999999999999944 589999999999999 99999999
Q ss_pred CCcEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhccCCCEEEecCcchH
Q 020977 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (319)
Q Consensus 150 ~k~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~ 228 (319)
+++.||+||+|+++.++.|++.+..+..+|+|+.+++++..+.+ ++++++|+|+||+||||||+++++|+||||.||++
T Consensus 82 ~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~ 161 (292)
T PF00579_consen 82 EKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRG 161 (292)
T ss_dssp TTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHH
T ss_pred cceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHH
Confidence 99999999999999999999999999999999999998666655 35899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhh
Q 020977 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFF 308 (319)
Q Consensus 229 hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI 308 (319)
|++++||+|+|+|++ . .|++|..+++ +++|+| +|.+|||||++ +++|+|+|++++|++||
T Consensus 162 ~~~l~rd~a~k~~~~---~-----------~~~~p~~l~~---~~l~~l-~G~~KMSKS~~--ns~I~L~d~~~~i~~Ki 221 (292)
T PF00579_consen 162 HIELARDLARKFNYK---E-----------IFPKPAGLTS---PLLPGL-DGQKKMSKSDP--NSAIFLDDSPEEIRKKI 221 (292)
T ss_dssp HHHHHHHHHHHHTHH---S-----------TSSS-EEEEE---TCBBST-TSSSBTTTTTT--GGS-BTTTTHHHHHHHH
T ss_pred HHHHHHHHHhhhccc---c-----------cccCchheee---cccccc-CCccccCccCC--ccEEEEeccchhHHHHH
Confidence 999999999999976 1 3778999998 569998 78779999997 47999999999999999
Q ss_pred hccccCCCC
Q 020977 309 RRFLTFLMN 317 (319)
Q Consensus 309 ~~A~Td~~~ 317 (319)
++|+|++.+
T Consensus 222 ~~a~~~~~~ 230 (292)
T PF00579_consen 222 KKAFCDPDR 230 (292)
T ss_dssp HHSHTSTTS
T ss_pred HHHhhCCCc
Confidence 999999976
No 15
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.7e-54 Score=406.97 Aligned_cols=206 Identities=29% Similarity=0.444 Sum_probs=186.7
Q ss_pred eEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC----------CHHHHHHHHHHHHHHHHHcCC
Q 020977 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (319)
Q Consensus 80 ~i~tGi~PTG-~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~----------~~~~i~~~~~~~~~~~lA~Gl 147 (319)
.+|+||+||| .+|||||++ +.+|++||+ |++++++|||+||+++.. +++++++++++++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 699999999 899999999 899999999999999843 789999999999999999999
Q ss_pred C--CCCcEEEEcccch---hhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCC----C
Q 020977 148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 218 (319)
Q Consensus 148 D--p~k~~if~QSd~~---~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~a----d 218 (319)
| |+|++||.||+|+ ++.++.|.+++.+++++|.|+.+||++. + +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999999 8999999999999999999999999765 2 46899999999999999999988 9
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020977 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 219 lvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~ 298 (319)
+||||.||++|++++||+|+|||. ++.|..++. ++||+| +| .|||||.++.-..|+++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~---p~l~~l-~G-~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTI---PLVTKL-DG-PKFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEee---ccccCC-CC-CcCCCCCCCCccccccC
Confidence 999999999999999999999982 456888887 679999 67 49999986311224579
Q ss_pred CCHHHHHHhhhccc
Q 020977 299 DPKDVSHKFFRRFL 312 (319)
Q Consensus 299 Dspe~I~kKI~~A~ 312 (319)
|+|++|++||++|+
T Consensus 214 dsp~~i~~ki~~a~ 227 (273)
T cd00395 214 TSPYEFYQFWINAV 227 (273)
T ss_pred CCHHHHHHHHHccc
Confidence 99999999999987
No 16
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-54 Score=448.74 Aligned_cols=216 Identities=23% Similarity=0.343 Sum_probs=188.5
Q ss_pred CCceEEEeeCCCCcchhhhH-HHHHHHHHHHhccCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020977 77 VKKRIVSGVQPTGSIHLGNY-LGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGny-lg~i~~~~~lQ~g~~~~ilIaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||++||||+ +++++.|..+|+|++++|+||||||+|++ .++++++.++++++++|+|+|+||+|+
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 46899999999999999994 66667777778899999999999999974 378999999999999999999999999
Q ss_pred EEEEccc-chhhhHHHHHHhccCCHHHHhchhchHHHHHhhC--CCCcccccccchHHHhhhhhccCCCEEEecCcchHH
Q 020977 153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (319)
Q Consensus 153 ~if~QSd-~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~--~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~h 229 (319)
+||+||+ +++|.+++|.+ .++++++.++.++|++.+..+ ++++++|+++||+|||||||+|++|+||||.||+||
T Consensus 111 ~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh 188 (682)
T PTZ00348 111 LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKV 188 (682)
T ss_pred EEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHH
Confidence 9999998 78899999998 566888888888887543222 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020977 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 leLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
+|||||+|++||+.| +|..+.+ ++||||++|.+|||||+| +|+|+|+|+|++|++||+
T Consensus 189 ~eLaRdia~~~g~~~-----------------kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~ 246 (682)
T PTZ00348 189 NMLAREYCDLIGRKL-----------------KPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIR 246 (682)
T ss_pred HHHHHHHHHHhCCCC-----------------Cceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHH
Confidence 999999999998432 2444443 789999778789999997 599999999999999999
Q ss_pred ccccCCC
Q 020977 310 RFLTFLM 316 (319)
Q Consensus 310 ~A~Td~~ 316 (319)
+|+||+.
T Consensus 247 kA~td~~ 253 (682)
T PTZ00348 247 QAYCPRV 253 (682)
T ss_pred hCCCCCC
Confidence 9999974
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.5e-54 Score=407.70 Aligned_cols=207 Identities=23% Similarity=0.250 Sum_probs=185.6
Q ss_pred ceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 020977 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (319)
Q Consensus 79 ~~i~tGi~PTG-~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~---------~~~~~i~~~~~~~~~~~lA~G 146 (319)
.++|+||+||| .+|||||+++ .+|++||+ |++++|+|||+||+++ + .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999 7999999984 69999999 8999999999999998 5 589999999999999999999
Q ss_pred CC--CCCcEEEEcccchhhhHHHHH----HhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEE
Q 020977 147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (319)
Q Consensus 147 lD--p~k~~if~QSd~~~~~el~w~----L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlv 220 (319)
+| |+|++||+||+|+++ ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 96 999999999999988 6777 9999999999999999976532 357899999999999999999999999
Q ss_pred EecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe-eecCC
Q 020977 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR-INLLD 299 (319)
Q Consensus 221 pvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~-I~L~D 299 (319)
|||.||++|++++||+|+|||+. .|..+.. ++||+| +| +|||||.++ +. |+++|
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~~------------------~~~~l~~---~ll~~l-~G-~KMSKS~~~--~~~i~l~d 210 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGYK------------------KVVGLTT---PLLTGL-DG-GKMSKSEGN--AIWDPVLD 210 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCCC------------------CcEEEee---ccccCC-CC-CcccCCCCC--cccccCCC
Confidence 99999999999999999999732 2545554 679999 67 599999973 44 69999
Q ss_pred CHHHHHHhhhccccCC
Q 020977 300 PKDVSHKFFRRFLTFL 315 (319)
Q Consensus 300 spe~I~kKI~~A~Td~ 315 (319)
+|++|++||++|+||+
T Consensus 211 sp~~i~~Ki~~a~~~~ 226 (269)
T cd00805 211 SPYDVYQKIRNAFDPD 226 (269)
T ss_pred CHHHHHHHHHcCCcHH
Confidence 9999999999999983
No 18
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-49 Score=389.60 Aligned_cols=211 Identities=19% Similarity=0.269 Sum_probs=178.6
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020977 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~--g~~~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~k 151 (319)
.+++++|+|++|||. |||||+++++ +..+||+ ++.++|+|+|+|+++. ..+++++++++++++++|+|+|+||+|
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~k 149 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVER 149 (383)
T ss_pred CCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 347899999999995 9999999965 4445897 5788999999999998 568999999999999999999999999
Q ss_pred cEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhh------ccCC-----CE
Q 020977 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DF 219 (319)
Q Consensus 152 ~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl------~~~a-----dl 219 (319)
++||.|++|. .+++|.... ++.|+.+++++.+.++ .++.++|+++||+||||||| .++. |+
T Consensus 150 t~I~s~~~~~--~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~l 222 (383)
T PLN02486 150 TFIFSDFDYV--GGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCL 222 (383)
T ss_pred eEEEeccHHH--hHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcce
Confidence 9999766653 345444322 5667888888877765 45679999999999999998 4554 89
Q ss_pred EEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020977 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 220 vpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D 299 (319)
||||.||+||++|+||+|+|||+ .+|..+++ .++|+|+++.+|||||.| +++|+|+|
T Consensus 223 VPvG~DQd~~~~ltRdia~r~~~------------------~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~D 279 (383)
T PLN02486 223 IPCAIDQDPYFRMTRDVAPRLGY------------------YKPALIES---RFFPALQGESGKMSASDP--NSAIYVTD 279 (383)
T ss_pred eecccchHHHHHHHHHHHHHhCC------------------CCcceecc---ccccCCCCCCCcCcCcCC--CCeeeccC
Confidence 99999999999999999999983 35877765 789999776689999997 58999999
Q ss_pred CHHHHHHhhhc-cccCCCC
Q 020977 300 PKDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 300 spe~I~kKI~~-A~Td~~~ 317 (319)
+|++|++||++ |+||+..
T Consensus 280 ~p~~i~~KI~k~A~t~~~~ 298 (383)
T PLN02486 280 TPKEIKNKINKYAFSGGQD 298 (383)
T ss_pred CHHHHHHHHhcCCCCCCCC
Confidence 99999999999 9999764
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.8e-47 Score=375.46 Aligned_cols=208 Identities=20% Similarity=0.229 Sum_probs=180.2
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 020977 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+++ |. +.+++++|+.++.. .++
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~~-ql~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIKE-QLF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHHH-HHH
Confidence 57899999999995 99999996 789999999 8999999999999997 42 56788899887655 459
Q ss_pred cCCCCCC--cEEEEcccchhhhHHHHHHh---ccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhcc----
Q 020977 145 CGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (319)
Q Consensus 145 ~GlDp~k--~~if~QSd~~~~~el~w~L~---~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~---- 215 (319)
+|+||++ ++||+||+|+++.++.|+|. +.++++++.++.+||++... ++++++|+|+||+|||||++++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999999 99999999999999999866 89999999988888765421 2578999999999999999999
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020977 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I 295 (319)
++|+||||.||++|++++||+|+|||.. .+..+.. +.|+++ +| +|||||. +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCCC---CCce
Confidence 9999999999999999999999999832 1223333 668898 78 8999997 6999
Q ss_pred ecCC---CHHHHHHhhhccccCC
Q 020977 296 NLLD---PKDVSHKFFRRFLTFL 315 (319)
Q Consensus 296 ~L~D---spe~I~kKI~~A~Td~ 315 (319)
+|+| +|+++++||+++ +|+
T Consensus 242 ~L~d~~tsp~~i~qki~~~-~D~ 263 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNI-SDA 263 (408)
T ss_pred eCCCCCCCHHHHHHHHhcC-ChH
Confidence 9999 999999999996 554
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.7e-45 Score=359.12 Aligned_cols=205 Identities=18% Similarity=0.238 Sum_probs=173.2
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHH
Q 020977 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~---------~~~~~i~~~~~~~~~~~l 143 (319)
.+++++|+||+|||. +||||+++ +.+|++||+ |++++++|||+||+++ | .+.+++++|+.++.+++.
T Consensus 31 ~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~ 109 (410)
T PRK13354 31 GKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIF 109 (410)
T ss_pred CCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence 358899999999995 99999877 789999999 8999999999999997 4 256789999999888876
Q ss_pred HcCCCCCCcEEEEcccchhhhHHHHHH---hccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhcc----
Q 020977 144 ACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY---- 215 (319)
Q Consensus 144 A~GlDp~k~~if~QSd~~~~~el~w~L---~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~---- 215 (319)
+ |+||++++||+||+|+++.++.|+| +..++++ ||.++++...+.+ ++++++++|+||+|||||++++
T Consensus 110 ~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~---~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~ 185 (410)
T PRK13354 110 K-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVN---RMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKE 185 (410)
T ss_pred H-hcCccceEEEECccccccccHHHHHHHHHhhccHH---HHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccC
Confidence 6 8999999999999999877777775 4566655 5555544444443 3578999999999999999999
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020977 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I 295 (319)
++|++|||.||++|++++||+++|+|.. .|..+.. +.|+++ ||+ |||||. +|+|
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~---~naI 239 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA---GGAI 239 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC---CCce
Confidence 9999999999999999999999999843 2444444 668898 885 999997 5899
Q ss_pred ecCCC---HHHHHHhhhcc
Q 020977 296 NLLDP---KDVSHKFFRRF 311 (319)
Q Consensus 296 ~L~Ds---pe~I~kKI~~A 311 (319)
+|+|+ |+++++||+++
T Consensus 240 ~L~d~~tsp~~i~qki~~~ 258 (410)
T PRK13354 240 WLDPEKTSPYEFYQFWMNI 258 (410)
T ss_pred eccCCCCCHHHHHHHHHcC
Confidence 99999 99999999986
No 21
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=1e-44 Score=355.65 Aligned_cols=210 Identities=22% Similarity=0.294 Sum_probs=177.7
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 020977 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (319)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA~ 145 (319)
++++|+||+||| .+||||+++ +.+|++||+ |++++++|||+||+++ |. +.+++++|+ +.++.++++
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 789999999999 799999997 688999999 8999999999999998 43 445666666 667888999
Q ss_pred CCCCCCcEEEEcccchh---hhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEe
Q 020977 146 GIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (319)
Q Consensus 146 GlDp~k~~if~QSd~~~---~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpv 222 (319)
|+||++++|++||+|.. +.++.|.+++.++++++.+..+|+.+. + +++++++|+||+|||||++++++|++||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~---~-~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL---E-RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH---h-cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 99999999999999864 566777799999999999999987543 2 3589999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC------CC--CCe
Q 020977 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP------SD--QSR 294 (319)
Q Consensus 223 G~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p------~~--~s~ 294 (319)
|.||++|++.+|++|++++... .|.+|.++++ ++ || .|||||.. .+ .++
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~-------~~-dg-~KmgKS~~~~i~l~~~~~~~~ 240 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLT-------PA-DG-EKMGKSGGGAVSLDEGKYDFY 240 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeec-------CC-CC-CCccCCCCCcccCCccHhhhh
Confidence 9999999999999999998542 2666776665 33 45 57777742 11 378
Q ss_pred eecCCCHHHHHHhhhccccCCC
Q 020977 295 INLLDPKDVSHKFFRRFLTFLM 316 (319)
Q Consensus 295 I~L~Dspe~I~kKI~~A~Td~~ 316 (319)
|++.|+||++.+||++++|++.
T Consensus 241 i~~~d~~D~~~~Ki~k~~t~~~ 262 (377)
T TIGR00234 241 QFWINTPDEDVKKILKLFTFLG 262 (377)
T ss_pred hhhcCCcHHHHHHHHHHcCCCc
Confidence 8888889999999999999975
No 22
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-40 Score=307.34 Aligned_cols=212 Identities=23% Similarity=0.198 Sum_probs=171.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHH-HHHc---CCCC
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP--YDTQQLSKATRETAAI-YLAC---GIDN 149 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~--~~~~~i~~~~~~~~~~-~lA~---GlDp 149 (319)
+.+.+|||++|||+||+|.+++ +.+..+|-+ ||+|.|++|||||++++ ..++.+..++.|+-.. +.++ +++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vp-m~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVP-MMKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeee-hhHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 5789999999999999999877 578888877 99999999999999985 3556666666554443 3344 4556
Q ss_pred CCcEEEEcccch---hhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcc
Q 020977 150 SKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (319)
Q Consensus 150 ~k~~if~QSd~~---~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ 226 (319)
++..|...|++. .++-..++++..++-..+++. +.. +.+. .++..++.++||+|||+|++++++|++++|.||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~a-gae-vvkq--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKA-GAE-VVKQ--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHh-hhh-HHHh--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 666777777763 245556677777766555544 432 2222 267899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHH
Q 020977 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHK 306 (319)
Q Consensus 227 ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~k 306 (319)
|+.+.+||++.+.+++ ++|.++++ +|+|||+.| .|||||+| .|.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~y------------------kKrihLmn---pMvPGL~q~-~KMSsSd~--~SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLGY------------------KKRIHLMN---PMVPGLAQG-EKMSSSDP--LSKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhCc------------------ccceeecC---CCCcccccc-CccccCCc--ccccccccCHHHHHH
Confidence 9999999999999984 35778887 779999655 89999998 599999999999999
Q ss_pred hhhccccCCCC
Q 020977 307 FFRRFLTFLMN 317 (319)
Q Consensus 307 KI~~A~Td~~~ 317 (319)
||++|||.|.|
T Consensus 244 KI~kAfCePg~ 254 (360)
T KOG2144|consen 244 KIKKAFCEPGN 254 (360)
T ss_pred HHHHhcCCCCC
Confidence 99999999965
No 23
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-36 Score=295.60 Aligned_cols=213 Identities=22% Similarity=0.240 Sum_probs=171.1
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C-CCHHHHHHHHH----HHH-HHHHHcCCC
Q 020977 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETA-AIYLACGID 148 (319)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~-~~~~~i~~~~~----~~~-~~~lA~GlD 148 (319)
+.++|+||+||| .+||||+++ +.++.+||+ ||+++++|||+||+++ | +..++.+..++ +++ ....++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHH-HHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 789999999999 699999998 689999999 8999999999999998 5 45555555553 222 333456777
Q ss_pred CC-CcEEEEcccchhhh---HHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecC
Q 020977 149 NS-KASVFVQSHVRAHV---ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (319)
Q Consensus 149 p~-k~~if~QSd~~~~~---el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~ 224 (319)
++ +++|.++|+|.... +..-.++.++|++|+.+..+++.+. ..+..+++.+|+||+|||+|+++++.|++.||.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~--~~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRL--EREQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHh--ccCCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 77 99999999996543 3333467899999988888877432 223579999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCC-------CCCeeec
Q 020977 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-------DQSRINL 297 (319)
Q Consensus 225 DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~-------~~s~I~L 297 (319)
|||.++.++||+++|++. +.+.++++ |.|.++ ||. |||||..+ +.|.|.+
T Consensus 189 DQ~~ni~~grdl~rr~g~------------------~~~~~lt~---PLL~~l-dG~-KmgKs~~~a~~~~s~~~Sp~~~ 245 (401)
T COG0162 189 DQWGNILAGRDLIRRLGQ------------------KKVVGLTT---PLLTGL-DGK-KMGKSEGGAVWLDSEKTSPYDF 245 (401)
T ss_pred HHHHHHHHHHHHHHHhCC------------------CCeEEEEe---ccccCC-CCC-cccccCCCceEccCCCCCcHhh
Confidence 999999999999999873 24667777 569998 885 88888642 2457778
Q ss_pred CCCHHHHHHhhhccccCCC
Q 020977 298 LDPKDVSHKFFRRFLTFLM 316 (319)
Q Consensus 298 ~Dspe~I~kKI~~A~Td~~ 316 (319)
.|.++.|..|++.+||...
T Consensus 246 yq~~~~i~D~~~~~~~~~~ 264 (401)
T COG0162 246 YQYWMNIEDADVKRFLKLL 264 (401)
T ss_pred hhcHhcCcHHHHHHHHHHh
Confidence 8888889999998887654
No 24
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-35 Score=276.70 Aligned_cols=209 Identities=21% Similarity=0.290 Sum_probs=179.2
Q ss_pred CCceEEEeeCCCC-cchhhhHHHHH-HHHHHHhccCc--EEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020977 77 VKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 77 ~~~~i~tGi~PTG-~lHLGnylg~i-~~~~~lQ~g~~--~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~k 151 (319)
+|+++|||..||. .|||||.++++ .+| ||+.++ .+|.+.|.+.++. ....++..+.+++++++++|+|+||+|
T Consensus 84 kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 84 KPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred CceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 5899999999995 59999999988 889 889655 6999999999998 457899999999999999999999999
Q ss_pred cEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhcc-----------CCCE
Q 020977 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QSDF 219 (319)
Q Consensus 152 ~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~-----------~adl 219 (319)
+.||.+.++..-. ..+-++-++.++.++++....+| +++.++|.+.+|..|||..+.. -.|+
T Consensus 162 TfIFsn~~y~g~~------~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CL 235 (397)
T KOG2145|consen 162 TFIFSNLDYMGGP------AFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCL 235 (397)
T ss_pred eEEEechhhccCc------HHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCcee
Confidence 9999999875310 11223456668888887777777 6778999999999999999874 2689
Q ss_pred EEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020977 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 220 vpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D 299 (319)
+|+.+||+++++++||+|+|++ +++|..+++ .++|.|++...|||.|+| +++|||+|
T Consensus 236 iPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~s---tffpaLqG~~~KMSASdp--ns~Ifltd 292 (397)
T KOG2145|consen 236 IPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHS---TFFPALQGAQTKMSASDP--NSAIFLTD 292 (397)
T ss_pred ceeeccCChHHHhhhhhhhhhC------------------CCCcceeeh---hhchhhhCcccccccCCC--CceEEecC
Confidence 9999999999999999999998 567988887 679999888899999998 69999999
Q ss_pred CHHHHHHhhhc-cccCCC
Q 020977 300 PKDVSHKFFRR-FLTFLM 316 (319)
Q Consensus 300 spe~I~kKI~~-A~Td~~ 316 (319)
++++|++||.+ |+++..
T Consensus 293 t~~qIk~KI~~~afSGGr 310 (397)
T KOG2145|consen 293 TAKQIKNKINKYAFSGGR 310 (397)
T ss_pred cHHHHHHHHHHhhccCCc
Confidence 99999999976 666543
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.98 E-value=2.4e-32 Score=283.65 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=151.9
Q ss_pred cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh-hHHHHH----HhccCCHHHHh
Q 020977 109 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLN 180 (319)
Q Consensus 109 g~~~~ilIaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~-~el~w~----L~~~~s~~~L~ 180 (319)
|++++|++|||||++++ ++.++|++.++|+++.|.|+|+|++ ++|+|+|++... ...||. ++..++++|++
T Consensus 407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~ 485 (682)
T PTZ00348 407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVE 485 (682)
T ss_pred CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHH
Confidence 89999999999999993 6999999999999999999999999 999999997544 446886 67899999999
Q ss_pred chhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccc
Q 020977 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (319)
Q Consensus 181 R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~ 260 (319)
|+.. ++..++|+++||+||++||+++++|++.+|.|||+.++||||++++.+
T Consensus 486 r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~------------------- 537 (682)
T PTZ00348 486 ELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI------------------- 537 (682)
T ss_pred HHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc-------------------
Confidence 9762 245689999999999999999999999999999999999999999633
Q ss_pred cCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCC
Q 020977 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFL 315 (319)
Q Consensus 261 ~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~ 315 (319)
.|.+++. .++|+|..|..+|++|++ +++|+|+|++++|++||++|||.+
T Consensus 538 -~~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cpp 586 (682)
T PTZ00348 538 -ECIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSAP 586 (682)
T ss_pred -cchhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCCC
Confidence 1333443 678999888889999976 699999999999999999999998
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.9e-18 Score=167.81 Aligned_cols=195 Identities=21% Similarity=0.255 Sum_probs=141.9
Q ss_pred CceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH-
Q 020977 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA- 144 (319)
Q Consensus 78 ~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA- 144 (319)
|.+||.||+||.. +|+||.++ +..++.+|. |++++-+|++.+|.++ |. +-+.++.|++.+...+..
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~-lm~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLA-LMVLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHH-HHHHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5789999999987 99999987 567888887 9999999999999998 31 223455555444333332
Q ss_pred ---------cCCCCCCcEEEEcccchhhhHHHHHH---hccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhh
Q 020977 145 ---------CGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 212 (319)
Q Consensus 145 ---------~GlDp~k~~if~QSd~~~~~el~w~L---~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADI 212 (319)
+|....+-.|+.+++|.+...|-=+| +.++.++.|.+.-+.+.+. ...+..++.+|+|-+|||+|.
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~RL--es~~GlSftEFtYQ~lQAYDf 219 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKSRL--ESPNGLSFTEFTYQLLQAYDF 219 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHHhh--cCCCCCcHHHHHHHHHHHHhH
Confidence 34444677899999998754443333 3566666655555544322 224678999999999999999
Q ss_pred hcc----CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 020977 213 LLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 213 l~~----~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~ 288 (319)
+++ +.+++.+|.||+.|++.+-|+.+|+-..- +.+|.+..++++ +- +| .|..||.
T Consensus 220 y~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~------------~~vfGlT~PLlT-------ss-tG-~KlGKSa 278 (467)
T KOG2623|consen 220 YHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQ------------AFVFGLTFPLLT-------SS-TG-AKLGKSA 278 (467)
T ss_pred HHHHHhcCeeEEecccccccccchHHHHHHHhcccc------------cceeeeeeeeEe-------cC-cc-hhhccCC
Confidence 984 79999999999999999999999986310 112334444443 32 67 7999997
Q ss_pred CCCCCeeecCC
Q 020977 289 PSDQSRINLLD 299 (319)
Q Consensus 289 p~~~s~I~L~D 299 (319)
+|+|+|.-
T Consensus 279 ---GnAvWLdp 286 (467)
T KOG2623|consen 279 ---GNAVWLDP 286 (467)
T ss_pred ---CceEEecC
Confidence 68999973
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.66 E-value=5.8e-16 Score=144.03 Aligned_cols=171 Identities=19% Similarity=0.175 Sum_probs=123.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-------EEEEc
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ 157 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~-------~if~Q 157 (319)
.|||.+||||+.+++.+|...+. +..+++.|.|. ++ .....+....+.+++.++||++|+. .+|.|
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDt----d~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIEDT----DQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcC----CC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 57899999999999999998876 55666679983 32 2345567778888899999999974 38999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHH
Q 020977 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia 237 (319)
|+..+..+ -. +.+| ...| =|..+|++.++.|....+++.|+.|.|+..+...-+.++
T Consensus 83 S~r~~~y~---~~-----~~~L----------~~~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~ 139 (239)
T cd00808 83 SERLEIYR---KY-----AEKL----------LEKG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY 139 (239)
T ss_pred eCCHHHHH---HH-----HHHH----------HHcC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence 98533211 11 0111 0111 278999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC----CCHHHHHHhhhc
Q 020977 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVSHKFFRR 310 (319)
Q Consensus 238 ~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~----Dspe~I~kKI~~ 310 (319)
+.|| ++.|...+. +.+++. +| .||||+... .+|.-. -+|+.|.+-+..
T Consensus 140 ~aLg------------------~~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 140 EALG------------------WEPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred HHcC------------------CCCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 9998 334655544 456666 56 699999842 333221 357777766654
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.52 E-value=8.6e-14 Score=118.60 Aligned_cols=63 Identities=43% Similarity=0.469 Sum_probs=53.7
Q ss_pred chHHHhhhhhccCC---CEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 020977 204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280 (319)
Q Consensus 204 YP~LQAADIl~~~a---dlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg 280 (319)
||+.|+||++.+.. |++++|.||++|+++.++++++++. ...|..+.. .+|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----------------~~~p~~~~~---~~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----------------PARPFGLTF---GRVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----------------CCCceEEEe---CCeECC-CC
Confidence 99999999999999 9999999999999999999999872 124777775 567775 55
Q ss_pred CCcCCCCC
Q 020977 281 LSKMSKSA 288 (319)
Q Consensus 281 ~~KMSKS~ 288 (319)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 7999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.20 E-value=1.1e-10 Score=108.33 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=119.8
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.|||||...++.+|..-+. +.++++-|-|. |+ ....+....+.+++.++|+++|+ .+++||+..+.
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wd~-~~~~QS~r~~~ 80 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDT-------DPERSRPEYVESILEDLKWLGLDWDE-GPYRQSDRFDL 80 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCC-CeeehhcCHHH
Confidence 57899999999999999976554 67788888887 33 33456777888999999999985 37999986432
Q ss_pred hHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhh
Q 020977 164 VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243 (319)
Q Consensus 164 ~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia~r~n~~ 243 (319)
.+ .. +++. ...| |..+|=+--+.|=...+.+.|.-|.|+..+-..-+.+++.+|
T Consensus 81 y~---~~--------~~~L-------~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg-- 134 (230)
T cd00418 81 YR---AY--------AEEL-------IKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG-- 134 (230)
T ss_pred HH---HH--------HHHH-------HHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC--
Confidence 11 10 0111 1111 556666666667777899999999999999999999999987
Q ss_pred hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC----CCHHHHHHhhhc
Q 020977 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVSHKFFRR 310 (319)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~----Dspe~I~kKI~~ 310 (319)
++.|...+. ++|.+. +| +||||++.. .+|.=. -.|+.|.+-+..
T Consensus 135 ----------------~~~P~~~H~---pll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 135 ----------------WEPPRFYHF---PRLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred ----------------CCCCeEEEe---eeeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHHH
Confidence 446877776 557665 56 799999852 333222 457777766554
No 30
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.80 E-value=1.8e-08 Score=96.78 Aligned_cols=179 Identities=20% Similarity=0.236 Sum_probs=114.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.|||||+..++.+|..-+. +.++++-|-|. |+ ....+....+.+++.++||++|. .+++||+..+.
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt-------D~~R~~~~~~~~I~~dL~wlGl~wDe-~~~~QS~r~~~ 84 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI-------DPPREVPGAADAILADLEWLGLHWDG-PVLYQSQRHDA 84 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CCCccchHHHHHHHHHHHHCCCCCCC-CceEeeccHHH
Confidence 46799999999999999987665 67888899986 32 34556777889999999999996 36889996432
Q ss_pred hH--------HHHHHhccCCHHHHhchhc--------hHHHHHhhC-CCC---------------------------c--
Q 020977 164 VE--------LMWLLSSATPIGWLNKMIQ--------FKEKSHKAG-GEN---------------------------V-- 197 (319)
Q Consensus 164 ~e--------l~w~L~~~~s~~~L~R~~~--------~k~~~~~~~-~~~---------------------------~-- 197 (319)
.+ ..+.+.|.++-.++++.-+ |.-.-+... ++. .
T Consensus 85 Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~ 164 (299)
T PRK05710 85 YRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLAL 164 (299)
T ss_pred HHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCC
Confidence 11 1123669999998865421 100000000 000 0
Q ss_pred cc---------ccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccC
Q 020977 198 GV---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIP 268 (319)
Q Consensus 198 ~~---------g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~ 268 (319)
.+ |..+|=+-=+.|=...+.+.|.=|.|....-..-..|.+.|+ ++.|+..+.
T Consensus 165 ~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~ 226 (299)
T PRK05710 165 AVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHL 226 (299)
T ss_pred CCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEe
Confidence 00 111111111222223468889999998877777777777776 456887776
Q ss_pred CCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020977 269 PAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 269 ~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D 299 (319)
+.|.+. +| +||||++ .+..|.+
T Consensus 227 ---pll~~~-~g-~kLSKr~----~~~~i~~ 248 (299)
T PRK05710 227 ---PLVLNA-DG-QKLSKQN----GAPALDA 248 (299)
T ss_pred ---ecccCC-CC-CcccccC----Cccchhh
Confidence 446675 67 7999997 3455544
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.79 E-value=9e-08 Score=94.04 Aligned_cols=193 Identities=22% Similarity=0.236 Sum_probs=108.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE-EEEEeccceec---------------C-C---------CC
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET-LFFIVDLHAIT---------------L-P---------YD 127 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~-~ilIaDlhA~t---------------~-~---------~~ 127 (319)
+..|-||+-|||.+||||+...+ .-+.+.++ |+++ +++..|.|.-+ + | ..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 56788899999999999987644 22334433 7887 55889999321 1 1 02
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhhhHHHH----HHhccCCHHHHhchhchHHHHHh----------hC
Q 020977 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMW----LLSSATPIGWLNKMIQFKEKSHK----------AG 193 (319)
Q Consensus 128 ~~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~~el~w----~L~~~~s~~~L~R~~~~k~~~~~----------~~ 193 (319)
++-...+...+.+.+..+|++.+ +|.+++.+.+.++.= .|...--+.++-.-..=++.... -|
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg 176 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCG 176 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcC
Confidence 23355666677888888999764 788888765432111 12111111110000000000000 00
Q ss_pred CC-------CcccccccchH---------------------HHhhhhhccCCCEEEecCcchHH---HHHHHHHHH-Hhh
Q 020977 194 GE-------NVGVALLTYPV---------------------LMASDILLYQSDFVPVGEDQKQH---LELTRELAE-RVN 241 (319)
Q Consensus 194 ~~-------~~~~g~l~YP~---------------------LQAADIl~~~adlvpvG~DQ~~h---leLaRdia~-r~n 241 (319)
.. +..-+.+.|=+ ==++.-..++.|+.|+|.||..+ +...+++++ .|+
T Consensus 177 ~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg 256 (353)
T cd00674 177 KDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREIFG 256 (353)
T ss_pred cceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCCEEeeCccccccccHHHHHHHHHHHHhC
Confidence 00 00012222211 11222233579999999999999 999999999 776
Q ss_pred hhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020977 242 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D 299 (319)
. +.|..+.. .++ .+ +|..|||||. ++.|.+.|
T Consensus 257 ~------------------~~P~~~~y---e~V-~l-~gg~KMSKSk---GnvI~~~d 288 (353)
T cd00674 257 G------------------EPPVPVMY---EFI-GL-KGGGKMSSSK---GNVITPSD 288 (353)
T ss_pred C------------------CCCeEEEe---eeE-Ee-CCCCccCCCC---CCcCCHHH
Confidence 2 23555443 223 34 3437999997 67887764
No 32
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.72 E-value=9.3e-08 Score=97.29 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=116.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCc------EEEEc
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA------SVFVQ 157 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~------~if~Q 157 (319)
.|||.+||||...++.+|.--.. |.++++-|-|. |. ....+....+.+++..+||++|.. -.|+|
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~Q 84 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDT-------DQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQ 84 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCceeh
Confidence 46799999999999999975544 67788888886 33 234556677888999999999853 14999
Q ss_pred ccchhh-hHHHH-------HHhccCCHHHHhchhc----------h---------HHHHHhh--CC---------C----
Q 020977 158 SHVRAH-VELMW-------LLSSATPIGWLNKMIQ----------F---------KEKSHKA--GG---------E---- 195 (319)
Q Consensus 158 Sd~~~~-~el~w-------~L~~~~s~~~L~R~~~----------~---------k~~~~~~--~~---------~---- 195 (319)
|+..+. .+..- .+-|+++-.+|...-. | .+..+.. |. +
T Consensus 85 S~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~ 164 (476)
T PRK01406 85 SERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEV 164 (476)
T ss_pred hcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCce
Confidence 996432 22111 1558998888754311 0 0000000 00 0
Q ss_pred -------------Ccccccc------cchHHHhhhhhc---cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccC
Q 020977 196 -------------NVGVALL------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (319)
Q Consensus 196 -------------~~~~g~l------~YP~LQAADIl~---~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~ 253 (319)
...++-+ -||..+.||++. .+.|.|..|+||..|.-.-..+.+.|+
T Consensus 165 ~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------------ 232 (476)
T PRK01406 165 VFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------------ 232 (476)
T ss_pred EEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC------------
Confidence 0001111 166667777743 578999999999999999999999987
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020977 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 254 ~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~ 298 (319)
+..|...+. +.+.++ +| +||||.+ +.+.|.
T Consensus 233 ------~~~p~~~H~---pli~~~-~g-~klSKR~----g~~~l~ 262 (476)
T PRK01406 233 ------WEVPVFAHL---PLILGP-DG-KKLSKRH----GATSVE 262 (476)
T ss_pred ------CCCCeEEEe---eeeeCC-CC-CcccCcC----CccCHH
Confidence 234766665 346666 66 7999997 355554
No 33
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.72 E-value=1.4e-07 Score=96.76 Aligned_cols=65 Identities=26% Similarity=0.467 Sum_probs=48.3
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHH-HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adlvpvG~DQ~~-hleLaRdia~-r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~ 292 (319)
+++|+.|.|.||.. +..+++++++ .++. +.|..+.. .++..- +| +|||||. +
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~------------------~~P~~~~y---~~v~~~-~G-~KMSKSk---G 286 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILGG------------------EPPEPFVY---ELFLDK-KG-EKISKSK---G 286 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcCC------------------CCCeeeee---eeEEeC-CC-CcccccC---C
Confidence 47999999999999 9999999999 7662 34666554 334432 35 7999997 6
Q ss_pred CeeecCC-----CHHHHH
Q 020977 293 SRINLLD-----PKDVSH 305 (319)
Q Consensus 293 s~I~L~D-----spe~I~ 305 (319)
|.|.+.| +|+.++
T Consensus 287 N~i~~~d~l~~~~pd~lR 304 (510)
T PRK00750 287 NVITIEDWLEYAPPESLR 304 (510)
T ss_pred CccCHHHHHHHCCHHHHH
Confidence 8888765 455554
No 34
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.68 E-value=1.1e-07 Score=97.19 Aligned_cols=179 Identities=17% Similarity=0.170 Sum_probs=114.6
Q ss_pred eEEEeeCCC--CcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi~PT--G~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~-~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+.|.|| |.+||||...++.+|.--+. |.++++-|-|. |.+ ...+..+.+.+++.++|||+|. ..|
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~~~~~~i~~~L~WLGl~wDe-~py 75 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-------DKERSTKEAVEAIFSGLKWLGLDWNG-EVI 75 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC-Cce
Confidence 356777776 99999999999999976554 67788888887 432 3345666788899999999984 379
Q ss_pred Ecccchhh-hHHHHH-------HhccCCHHHHhchhc----------hHHHHHhh-------C-----------CCCc--
Q 020977 156 VQSHVRAH-VELMWL-------LSSATPIGWLNKMIQ----------FKEKSHKA-------G-----------GENV-- 197 (319)
Q Consensus 156 ~QSd~~~~-~el~w~-------L~~~~s~~~L~R~~~----------~k~~~~~~-------~-----------~~~~-- 197 (319)
+||+..+. .+..-. +-|+++-.+|+..-. |....+.. + .+.+
T Consensus 76 ~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~ 155 (513)
T PRK14895 76 FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITI 155 (513)
T ss_pred eEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEE
Confidence 99996432 221111 458999888764421 10000000 0 0000
Q ss_pred ---ccccccc----------------hHHHhhhh---hccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCC
Q 020977 198 ---GVALLTY----------------PVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (319)
Q Consensus 198 ---~~g~l~Y----------------P~LQAADI---l~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~ 255 (319)
--|.+.+ |..+-+.+ ...+.+.|..|.||..|.-.-..+.+.++
T Consensus 156 ~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG-------------- 221 (513)
T PRK14895 156 HDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG-------------- 221 (513)
T ss_pred EeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC--------------
Confidence 0012222 11111111 22378999999999999999899999887
Q ss_pred CCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020977 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p 289 (319)
+..|...+. +.|.+. +| +||||.+.
T Consensus 222 ----~~~p~~~H~---plv~~~-~g-~KLSKR~g 246 (513)
T PRK14895 222 ----YAVPSMTHI---PLIHGA-DG-AKLSKRHG 246 (513)
T ss_pred ----CCCCeEEEE---EeEEcC-CC-CccccccC
Confidence 235777765 457776 66 79999974
No 35
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.64 E-value=2.5e-07 Score=94.00 Aligned_cols=189 Identities=19% Similarity=0.206 Sum_probs=117.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.|||||...++.+|.--.. +.++++-|-|. |+ ....+....+.+++.++||++|. ..|+||+..+.
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~ 80 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDT-------DLERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDI 80 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHH
Confidence 47899999999999999975544 67788888886 33 23445677888899999999985 47999996432
Q ss_pred -hHHHHH-------HhccCCHHHHhchhc-------------------hHHHHHhh--C---------CC-C-c-----c
Q 020977 164 -VELMWL-------LSSATPIGWLNKMIQ-------------------FKEKSHKA--G---------GE-N-V-----G 198 (319)
Q Consensus 164 -~el~w~-------L~~~~s~~~L~R~~~-------------------~k~~~~~~--~---------~~-~-~-----~ 198 (319)
.+..-. +-|+++-.+++.+-. -.+..+.. + +. . + -
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~ 160 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQV 160 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEecc
Confidence 221111 458898888763311 00000000 0 00 0 0 0
Q ss_pred ccccc----------------chHHH---hhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCcc
Q 020977 199 VALLT----------------YPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259 (319)
Q Consensus 199 ~g~l~----------------YP~LQ---AADIl~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~ 259 (319)
.|.+. +|..+ +.|=...+.|.|..|.||..|...-..+.+.++
T Consensus 161 ~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------ 222 (470)
T TIGR00464 161 RGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------ 222 (470)
T ss_pred cceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------
Confidence 01111 12111 111122379999999999999999999999987
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhh
Q 020977 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFR 309 (319)
Q Consensus 260 ~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~ 309 (319)
+..|...+. +.+.++ +| +||||.. +.+.|.| .|+.+.+-+.
T Consensus 223 ~~~p~~~H~---p~l~~~-~g-~kLSKR~----g~~~l~~l~~~g~~p~a~~~~~~ 269 (470)
T TIGR00464 223 WKIPVFAHL---PMILDE-DG-KKLSKRD----GATSIMQFKEQGYLPEALINYLA 269 (470)
T ss_pred CCCCeEEEE---eeeecC-CC-ccccccC----CCccHHHHHHCCCCHHHHHHHHH
Confidence 234666665 335565 66 7999997 3555542 4665655543
No 36
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=3.7e-07 Score=92.73 Aligned_cols=178 Identities=20% Similarity=0.204 Sum_probs=114.1
Q ss_pred EEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020977 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 81 i~tGi~--PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
|.+=|. |||.+||||...++.+|..-+. +.++++-|-|. |+ ....+....+.+++..+||+++.. +++
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WLGl~wde~-~~~ 81 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT-------DPERETPEAEDAILEDLEWLGLDWDEG-PYY 81 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCCCCHHHHHHHHHHHHhcCCCCCCc-eee
Confidence 555555 4599999999999999976555 67888888887 33 334556677888899999999964 899
Q ss_pred cccchhh-hHH-HHH------HhccCCHHHHhchh-----------chH---------HHHHhhCC--------------
Q 020977 157 QSHVRAH-VEL-MWL------LSSATPIGWLNKMI-----------QFK---------EKSHKAGG-------------- 194 (319)
Q Consensus 157 QSd~~~~-~el-~w~------L~~~~s~~~L~R~~-----------~~k---------~~~~~~~~-------------- 194 (319)
||+..+. .+. .++ +-|+++-.+|+.+- .+. ++....+.
T Consensus 82 QS~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~ 161 (472)
T COG0008 82 QSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAH 161 (472)
T ss_pred hhhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCC
Confidence 9996432 221 122 34889886665541 111 00011000
Q ss_pred C-----Ccccccccch------HHHhhhhhc------------cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccc
Q 020977 195 E-----NVGVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (319)
Q Consensus 195 ~-----~~~~g~l~YP------~LQAADIl~------------~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~ 251 (319)
. +.-.|.+..+ ++.-+|++. .+.+.|.-|.|+..+=..-+-+.+-|+
T Consensus 162 ~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg---------- 231 (472)
T COG0008 162 PGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG---------- 231 (472)
T ss_pred CCCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC----------
Confidence 0 0011333332 333344433 268999999999888777777777776
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020977 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 252 ~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p 289 (319)
++.|...+. ++|.+ -+| +||||++.
T Consensus 232 --------~~~P~~~H~---~li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 --------WPPPVYAHL---PLLLN-EDG-KKLSKRKG 256 (472)
T ss_pred --------CCCCcEEEe---eeeec-CCC-CeecCccC
Confidence 455887776 55666 355 79999973
No 37
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.50 E-value=1.7e-06 Score=82.24 Aligned_cols=192 Identities=17% Similarity=0.160 Sum_probs=118.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.|||||...++.+|..-+. +..+++-|-|. |+ ....+....+.+++..+||++|+. +++||+..+.
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDt-------D~~R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~ 79 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDL-------DPPREVPGAADDILRTLEAYGLHWDGE-VVYQSQRHAL 79 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHH
Confidence 47899999999999999976554 67788888887 32 234456677888999999999963 6899996442
Q ss_pred h-HHHHH-------HhccCCHHHHhchh-----chHHHHHh----hCCC-----------Ccc-----ccccc-------
Q 020977 164 V-ELMWL-------LSSATPIGWLNKMI-----QFKEKSHK----AGGE-----------NVG-----VALLT------- 203 (319)
Q Consensus 164 ~-el~w~-------L~~~~s~~~L~R~~-----~~k~~~~~----~~~~-----------~~~-----~g~l~------- 203 (319)
. +..-. +.|.+|-.++++.. .|...-+. .+.+ .+. .|.+.
T Consensus 80 Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~ 159 (272)
T TIGR03838 80 YQAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAV 159 (272)
T ss_pred HHHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccC
Confidence 2 21111 45899988886541 11100000 0000 000 11111
Q ss_pred ----------chHHHhhhh---hccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCC
Q 020977 204 ----------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPA 270 (319)
Q Consensus 204 ----------YP~LQAADI---l~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~ 270 (319)
||..+=|.. ...+.+.|.=|+|...+--.-.-|.+.|+ ++.|...+.
T Consensus 160 ~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~-- 219 (272)
T TIGR03838 160 GDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHL-- 219 (272)
T ss_pred CCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEec--
Confidence 222222211 22468999999998887777777777776 446877765
Q ss_pred CcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhc
Q 020977 271 GARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRR 310 (319)
Q Consensus 271 ~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~ 310 (319)
+.|.+. +| +|+||++.. ..|.=.|+++.+-.=+.+
T Consensus 220 -pll~~~-~g-~kLSKR~~~--~~i~~~~~~~~~~~~l~~ 254 (272)
T TIGR03838 220 -PLVVNA-DG-EKLSKQNGA--PALDLSHPLPALLAALRF 254 (272)
T ss_pred -hhhhCC-CC-CeeeccCCc--cchhcCCcHHHHHHHHHH
Confidence 457775 67 799999742 344334556555544433
No 38
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.42 E-value=1.3e-06 Score=81.61 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=98.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.|||||...++.+|..-+. +.+.++-|-|. |+ ....+....+.+++.++|+++| ++++||+..+.
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~ 79 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDT-------NPEKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQ 79 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCcccchHHHHHHHHHHHHcCCCCC--CceecccCHHH
Confidence 47899999999999999876544 66788888887 44 3445567788899999999999 68999996432
Q ss_pred -hHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHh---hhhhccCCCEEEecCcchHHHHHHHHHHHH
Q 020977 164 -VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAER 239 (319)
Q Consensus 164 -~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQA---ADIl~~~adlvpvG~DQ~~hleLaRdia~r 239 (319)
.+..-.|- ++-..|.. .+.+ . ...+||..+= .|=...+.+.|.-|+|....-..-.-+.+.
T Consensus 80 Y~~~~~~L~--------~~g~aY~~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~a 144 (238)
T cd00807 80 LYEYAEQLI--------KKGKAYVH--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDA 144 (238)
T ss_pred HHHHHHHHH--------HcCCeecC--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHH
Confidence 22111111 00000110 0001 1 1223455443 344456899999999998877777777777
Q ss_pred hhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020977 240 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 240 ~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p 289 (319)
|+ ++.|..+.- ..+ +. +| +|+||++.
T Consensus 145 Lg------------------~~~P~~~~~---~hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 145 LR------------------LYRPHQWEF---SRL-NL-TY-TVMSKRKL 170 (238)
T ss_pred cC------------------CCCCceeEE---EEE-CC-CC-CCccCcCc
Confidence 76 344653221 223 43 66 79999973
No 39
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.39 E-value=2e-06 Score=88.25 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=109.1
Q ss_pred EEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020977 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 81 i~tGi~--PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
+.+=|. |||.|||||...++.+|.--+. +..+++-|-|. |+ ....+....+.+++.++|++++ .+++
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDT-------Dp~R~~~e~~~~I~~dL~WLGl~wD--~~~~ 82 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDT-------NPSKEKAEFEESIIEDLGKIEIKPD--SVSF 82 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CCCccchHHHHHHHHHHHHhCCCCC--CCcc
Confidence 445554 5699999999999999975544 66777777776 43 3455677788999999999998 4789
Q ss_pred cccchhh-hHHHHH-------HhccCCHHHHhch-----------hchHHHHHh--------hCC-------------CC
Q 020977 157 QSHVRAH-VELMWL-------LSSATPIGWLNKM-----------IQFKEKSHK--------AGG-------------EN 196 (319)
Q Consensus 157 QSd~~~~-~el~w~-------L~~~~s~~~L~R~-----------~~~k~~~~~--------~~~-------------~~ 196 (319)
||+..+. .+.+-. +.|.++-.+++.. .+..+..+. +.+ .+
T Consensus 83 qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n 162 (523)
T PLN03233 83 TSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDN 162 (523)
T ss_pred ccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCC
Confidence 9997542 222221 4588888877422 111110000 000 00
Q ss_pred cccccc------------------cchHHHhhhhh---ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCC
Q 020977 197 VGVALL------------------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (319)
Q Consensus 197 ~~~g~l------------------~YP~LQAADIl---~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~ 255 (319)
.++.-+ .||..+=|-.+ ..+.++|.-|.|...+-..-.-+.+.|+
T Consensus 163 ~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg-------------- 228 (523)
T PLN03233 163 GTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG-------------- 228 (523)
T ss_pred CCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC--------------
Confidence 111100 24444433332 2478999999999988888888888876
Q ss_pred CCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 020977 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~ 288 (319)
++.|.... + ...++ +| .||||++
T Consensus 229 ----~~~P~~~~-f---~rln~-~~-~kLSKR~ 251 (523)
T PLN03233 229 ----LRRPRIHA-F---ARMNF-MN-TVLSKRK 251 (523)
T ss_pred ----CCCCeeee-e---EEECC-CC-CcccccC
Confidence 34576422 2 24455 56 6999996
No 40
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.39 E-value=1.7e-06 Score=80.98 Aligned_cols=158 Identities=22% Similarity=0.195 Sum_probs=101.7
Q ss_pred EeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHH---HHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 020977 83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQ---LSKATRETAAIYLACGIDNSKASVFVQS 158 (319)
Q Consensus 83 tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~---i~~~~~~~~~~~lA~GlDp~k~~if~QS 158 (319)
.|-.|||.+||||...++.+|+.-+. +..+++-|-|. |.+. ..+...++.+++.++|++++ ++++||
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDt-------D~~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~qS 76 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDT-------DPRTKRPDPEAYDMIPEDLEWLGVKWD--EVVIAS 76 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcC-------CCCcccchHHHHHHHHHHHHHcCCCCC--Cccchh
Confidence 35568899999999999988875544 55677788887 3322 44555678899999999998 579999
Q ss_pred cchh-hhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhh---hhhccCCCEEEecCcchHHHHHHH
Q 020977 159 HVRA-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTR 234 (319)
Q Consensus 159 d~~~-~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAA---DIl~~~adlvpvG~DQ~~hleLaR 234 (319)
+..+ +.+..-.|- ++-..|. ....+ +. ...||..+=| |=...+.+.|.-|+|...+-..-.
T Consensus 77 ~r~~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~ 141 (240)
T cd09287 77 DRIELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQR 141 (240)
T ss_pred ccHHHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHH
Confidence 9643 222211111 1111111 01111 11 1234554433 334568999999999998888777
Q ss_pred HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 020977 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 235 dia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~ 288 (319)
-+.+.|+ ++.|...+. ++|.. +| +||||.+
T Consensus 142 ~l~~~Lg------------------~~~P~~~H~---pll~~--~~-~kLSKR~ 171 (240)
T cd09287 142 YIYEYFG------------------WEYPETIHW---GRLKI--EG-GKLSTSK 171 (240)
T ss_pred HHHHHcC------------------CCCCcEEee---eeecC--CC-Ceecccc
Confidence 7888876 345777765 44532 46 8999997
No 41
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.37 E-value=1.8e-06 Score=86.92 Aligned_cols=88 Identities=24% Similarity=0.276 Sum_probs=64.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.+||||...++.+|.--+. |.++++-|-|. |+ ....+....+.+++.++||++| +.|+||+..+.
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WlGl~wD--e~y~QSeR~~~ 77 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDT-------DKERNIEGKDKEILEILNLFGISWD--KLVYQSENLKF 77 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCChHHHHHHHHHHHHcCCCCC--CCeehhccHHH
Confidence 48899999999999999976655 67888888887 33 2344566778889999999999 47999996432
Q ss_pred -hHHHHH-------HhccCCHHHHhch
Q 020977 164 -VELMWL-------LSSATPIGWLNKM 182 (319)
Q Consensus 164 -~el~w~-------L~~~~s~~~L~R~ 182 (319)
.+..-. +-|+++-.+++.+
T Consensus 78 Y~~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 78 HRQMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred HHHHHHHHHHcCCeeeecCCHHHHHHH
Confidence 221111 4589998887644
No 42
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.33 E-value=3.2e-06 Score=87.87 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=111.2
Q ss_pred eEEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+=|. |||.|||||...++.+|..-+. +..+++-|-|. |+ ....+....+.+++.++|++++. .++
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDT-------Dp~R~~~e~~d~IleDL~WLGl~wDe-~~~ 123 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDT-------NPSKEKEHFEQAILDDLATLGVSWDV-GPT 123 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC-------CCcccCHHHHHHHHHHHHHCCCCCCC-cee
Confidence 4555555 5699999999999999976555 66788888776 44 34556778899999999999985 378
Q ss_pred Ecccchhh-hHHHHH-------HhccCCHHHHhchh------chHHH-----HHh-----hCC--C--------------
Q 020977 156 VQSHVRAH-VELMWL-------LSSATPIGWLNKMI------QFKEK-----SHK-----AGG--E-------------- 195 (319)
Q Consensus 156 ~QSd~~~~-~el~w~-------L~~~~s~~~L~R~~------~~k~~-----~~~-----~~~--~-------------- 195 (319)
+||+..+. .+.+-. +.|.++-.+++... .+.+. .+. .+. +
T Consensus 124 ~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~ 203 (601)
T PTZ00402 124 YSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNE 203 (601)
T ss_pred eccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCC
Confidence 99996542 222211 45788877664321 11110 000 000 0
Q ss_pred Ccccc-c-----------------ccchHHHhhhhh---ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 020977 196 NVGVA-L-----------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (319)
Q Consensus 196 ~~~~g-~-----------------l~YP~LQAADIl---~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~ 254 (319)
+.+++ . -.||..+=|-.+ ..+.++|.-|.|...+-..-.-+.+.|+
T Consensus 204 n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg------------- 270 (601)
T PTZ00402 204 NKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG------------- 270 (601)
T ss_pred CCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC-------------
Confidence 00000 0 133433333222 2368999999999988888888888876
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020977 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 255 ~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p 289 (319)
+..|...+. ++ .++ +| .||||+.-
T Consensus 271 -----~~~P~~~h~---~r-Ln~-~g-~kLSKRkl 294 (601)
T PTZ00402 271 -----IRKPIVEDF---SR-LNM-EY-SVMSKRKL 294 (601)
T ss_pred -----CCCceEEEE---ee-EcC-CC-CcccccCC
Confidence 345766664 43 365 66 79999974
No 43
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.31 E-value=6.4e-06 Score=79.71 Aligned_cols=192 Identities=19% Similarity=0.136 Sum_probs=112.2
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.|||||...++.+|..-.. +..+++-|-|. |+ ....+....+.+++..+||++| -.++.||+..+.
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~ 80 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDT-------DPERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEI 80 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETS-------STTTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccc-------ccccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHH
Confidence 47899999999999999976554 66788888887 33 2345666778889999999998 467899996443
Q ss_pred hH-HHH-------HHhccCCHHHHhchhch------------HHH--------HH--hh-C---------CCC-------
Q 020977 164 VE-LMW-------LLSSATPIGWLNKMIQF------------KEK--------SH--KA-G---------GEN------- 196 (319)
Q Consensus 164 ~e-l~w-------~L~~~~s~~~L~R~~~~------------k~~--------~~--~~-~---------~~~------- 196 (319)
.+ ..- .+.|.++-.+++....- ... .+ .. + +..
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D 160 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRD 160 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeeccccccccccc
Confidence 21 111 14588888776644322 000 00 00 0 000
Q ss_pred cccccc-------cchHHHhhhh------------hccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCC
Q 020977 197 VGVALL-------TYPVLMASDI------------LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257 (319)
Q Consensus 197 ~~~g~l-------~YP~LQAADI------------l~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~ 257 (319)
.-.|.+ -.++++=+|. ...+.++|.=|.|....-..-.-|.+.|+
T Consensus 161 ~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg---------------- 224 (314)
T PF00749_consen 161 LVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG---------------- 224 (314)
T ss_dssp TTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT----------------
T ss_pred CcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC----------------
Confidence 001111 1222332332 23478999999999988888888888877
Q ss_pred ccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee------ecCCCHHHHHHhhhc
Q 020977 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI------NLLDPKDVSHKFFRR 310 (319)
Q Consensus 258 ~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I------~L~Dspe~I~kKI~~ 310 (319)
++.|...+. +.+.+. +| +|+||++.. ..| .-.++|+.+-+=+++
T Consensus 225 --~~~P~~~H~---pl~l~~-~g-~kLSKR~~~--~~i~~~~~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 225 --WPPPPYAHL---PLILNE-DG-KKLSKRKGA--KSIELGDYREWGDPPEATLNYLAR 274 (314)
T ss_dssp --SSS-EEEEE---EEEEET-TS-SBSSTTCSH--HBHHHHHHHHTT-THHHHHHHHHH
T ss_pred --CCCcceEee---eeeecC-CC-cEechhhcc--ccccccccccCCCCHHHHHHHHHH
Confidence 334666665 345564 56 799999842 332 234677777665543
No 44
>PLN02627 glutamyl-tRNA synthetase
Probab=98.28 E-value=1.5e-05 Score=82.14 Aligned_cols=92 Identities=18% Similarity=0.176 Sum_probs=65.4
Q ss_pred eeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCc-------EE
Q 020977 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA-------SV 154 (319)
Q Consensus 84 Gi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~-------~i 154 (319)
-=.|||.+||||...++.+|..-+. +.++++-|-|. |. ....+....+.+++.++||++|.. -.
T Consensus 51 APSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gp 123 (535)
T PLN02627 51 APSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-------DLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGP 123 (535)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCC
Confidence 3356799999999999999986655 67788888886 33 234456677888999999999964 25
Q ss_pred EEcccchhh-hHHHH-------HHhccCCHHHHhch
Q 020977 155 FVQSHVRAH-VELMW-------LLSSATPIGWLNKM 182 (319)
Q Consensus 155 f~QSd~~~~-~el~w-------~L~~~~s~~~L~R~ 182 (319)
|+||+..+. .+..- .+-|+++-.+++.+
T Consensus 124 y~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~ 159 (535)
T PLN02627 124 YRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAM 159 (535)
T ss_pred eeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHH
Confidence 999996432 22111 15588988877543
No 45
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.27 E-value=1.6e-06 Score=87.60 Aligned_cols=172 Identities=22% Similarity=0.198 Sum_probs=106.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.+||||...++.+|..-.. +.++++-|-|. |. ....+....+.+++..+|+++| +.|+||+..+.
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~Rs~~~~~~~I~e~L~wLGI~~D--e~y~QSer~~~ 80 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDT-------DLERSKQEYADAIAEDLKWLGINWD--RTFRQSDRFDR 80 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccC-------CcccchHHHHHHHHHHHHHcCCCCC--ccccHHHHHHH
Confidence 47799999999999999976554 67788888887 33 2345566778888999999998 47999996432
Q ss_pred -hHHH-------HHHhccCCHHHHhchhc----------hH---------HHHHhh--C----------CCCc-----cc
Q 020977 164 -VELM-------WLLSSATPIGWLNKMIQ----------FK---------EKSHKA--G----------GENV-----GV 199 (319)
Q Consensus 164 -~el~-------w~L~~~~s~~~L~R~~~----------~k---------~~~~~~--~----------~~~~-----~~ 199 (319)
.+.. ..+-|++|-.+|+.+-. |. +..+.. + ++.+ --
T Consensus 81 y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~ 160 (445)
T PRK12558 81 YDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIR 160 (445)
T ss_pred HHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEee
Confidence 1111 11458999888754321 00 000000 0 0000 01
Q ss_pred ccccchHHHhhhhhc-------------------cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccc
Q 020977 200 ALLTYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (319)
Q Consensus 200 g~l~YP~LQAADIl~-------------------~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~ 260 (319)
|.+.++.-.--|.+. .+.++|.=|+|...+--.-.-|.+.|+ +
T Consensus 161 G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------------------~ 222 (445)
T PRK12558 161 GEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------------------A 222 (445)
T ss_pred eEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------------------C
Confidence 333332222223333 258889999998877666666666665 4
Q ss_pred cCCccccCCCCcccccCCCCCCcCCCCCC
Q 020977 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 261 ~~P~~l~~~~~~~l~gL~dg~~KMSKS~p 289 (319)
+.|+..+. ++|.+- +| +|+||.+.
T Consensus 223 ~~P~f~H~---pli~~~-~g-~KLSKR~g 246 (445)
T PRK12558 223 KPPVFAHL---SLLTGA-DG-KGLSKRLG 246 (445)
T ss_pred CCCeEEEc---ccccCC-Cc-ccccccCC
Confidence 46887776 446664 66 79999974
No 46
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.23 E-value=1.1e-05 Score=83.62 Aligned_cols=180 Identities=18% Similarity=0.131 Sum_probs=111.8
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
.+..-+=.|||.+||||...++.+|..-+. +..+++-|-|.-.-+ .....+....+.+++.++|++++ .+++|
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~----~R~~~e~~~~I~edL~wLGl~wD--~~~~q 175 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRT----KRPDPEAYDMILEDLKWLGVKWD--EVVIQ 175 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCc----ccchHHHHHHHHHHHHHcCCCCC--CccCc
Confidence 455666677799999999999988865444 567788888872211 12344555778889999999998 57999
Q ss_pred ccchhh-hHHHH-------HHhccCCHHHHhchhc-----------hHH-------HHH----------hhC-C---CCc
Q 020977 158 SHVRAH-VELMW-------LLSSATPIGWLNKMIQ-----------FKE-------KSH----------KAG-G---ENV 197 (319)
Q Consensus 158 Sd~~~~-~el~w-------~L~~~~s~~~L~R~~~-----------~k~-------~~~----------~~~-~---~~~ 197 (319)
|+..+. .+..- .+.|.++-.++++... ..+ +.. +.. + .+.
T Consensus 176 Sdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~ 255 (567)
T PRK04156 176 SDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNP 255 (567)
T ss_pred ccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCC
Confidence 996432 22111 1457777666643210 000 000 000 0 000
Q ss_pred c------------------cccccchHHHhh---hhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCC
Q 020977 198 G------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (319)
Q Consensus 198 ~------------------~g~l~YP~LQAA---DIl~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~ 256 (319)
+ -+...||.++=| |-...+.++|.-|.|...+-..-..+.+.|+
T Consensus 256 ~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg--------------- 320 (567)
T PRK04156 256 SVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG--------------- 320 (567)
T ss_pred CccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC---------------
Confidence 0 011235655432 3344589999999999998888888888876
Q ss_pred CccccCCccccCCCCcccccCCCCCCcCCCCC
Q 020977 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 257 ~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~ 288 (319)
+..|...+. ++|. . +| .|||||.
T Consensus 321 ---~~~P~~~H~---~~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 ---WEYPETIHY---GRLK-I-EG-FVLSTSK 343 (567)
T ss_pred ---CCCceEEEc---ceec-C-CC-ceeeccc
Confidence 334777775 4453 4 56 6999997
No 47
>PLN02907 glutamate-tRNA ligase
Probab=98.16 E-value=1.1e-05 Score=85.95 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=64.6
Q ss_pred eEEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+=|. |||.+||||...++.+|..-+. +.++++-|-|. |+ ....+....+.+++..+|+++++ ++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDT-------dp~r~~~e~~~~I~~dl~wLG~~~d~--~~ 283 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDT-------NPSKESDEFVENILKDIETLGIKYDA--VT 283 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCcCChHHHHHHHHHHHHcCCCCCC--cc
Confidence 4666665 5599999999999999865444 66777777776 33 23445677788899999999985 68
Q ss_pred Ecccchhh-hHHHHH-------HhccCCHHHHh
Q 020977 156 VQSHVRAH-VELMWL-------LSSATPIGWLN 180 (319)
Q Consensus 156 ~QSd~~~~-~el~w~-------L~~~~s~~~L~ 180 (319)
+||+..+. .+.+-. +.|.++..+++
T Consensus 284 ~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~ 316 (722)
T PLN02907 284 YTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMR 316 (722)
T ss_pred cccccHHHHHHHHHHHHHcCCeeecCCCHHHHH
Confidence 99997542 222111 34777777664
No 48
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.07 E-value=1.4e-05 Score=64.83 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=42.5
Q ss_pred EEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHH
Q 020977 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140 (319)
Q Consensus 81 i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~ 140 (319)
+++|-.+ +.+|+||+.+ ++++.++++ .+++.++|.++...+.+...++++.+...+
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~ 57 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEE 57 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHH
Confidence 5667777 8999999987 788888774 699999999998765556666665554443
No 49
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.05 E-value=2.5e-05 Score=80.46 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=53.4
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHH--HHHHh-c-cCcE-EEEEeccc--------------------eecC-C--C--C
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIALQ-N-SYET-LFFIVDLH--------------------AITL-P--Y--D 127 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~--~~~lQ-~-g~~~-~ilIaDlh--------------------A~t~-~--~--~ 127 (319)
+..|-||+-|||.+||||....+.- +.+.. . |.++ +|+.+|.| .++. | . .
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 6789999999999999998765522 33333 2 7776 67889999 1221 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh
Q 020977 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (319)
Q Consensus 128 ~~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~ 162 (319)
..-...+-....+.+-.+||+ .+|+.+++.+.
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y~ 130 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGIN---PEFIRASKQYT 130 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhhh
Confidence 122333344556666678996 47888888653
No 50
>PLN02859 glutamine-tRNA ligase
Probab=98.04 E-value=2.6e-05 Score=83.29 Aligned_cols=176 Identities=13% Similarity=0.091 Sum_probs=108.9
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020977 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 81 i~tGi--~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~-~i~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
|.+=| +|||.|||||...++.+|..-+. +..+++-|-|. |++ ...+....+.+++.++|++|++ +++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT-------dp~r~~~e~~~~I~edL~WLG~~~d~--~~~ 335 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT-------NPEAEKKEYIDHIEEIVEWMGWEPFK--ITY 335 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCccchHHHHHHHHHHHHcCCCCCC--ccc
Confidence 44555 46699999999999999875554 66777777776 442 4456777888899999999984 689
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHhchhc------------------hHHHHHh-hC-------------CCC
Q 020977 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSHK-AG-------------GEN 196 (319)
Q Consensus 157 QSd~~~-~~el~w~-------L~~~~s~~~L~R~~~------------------~k~~~~~-~~-------------~~~ 196 (319)
||++.+ +.+.+-. +.|.++-.+++..-. |.++... +. ..+
T Consensus 336 qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n 415 (788)
T PLN02859 336 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDN 415 (788)
T ss_pred ccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCC
Confidence 999753 3332222 448888776642211 1111100 00 000
Q ss_pred cc-----cc-------------cccchHHHhhhhh---ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCC
Q 020977 197 VG-----VA-------------LLTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (319)
Q Consensus 197 ~~-----~g-------------~l~YP~LQAADIl---~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~ 255 (319)
.+ .+ ..+||..-=|-.+ +.+.++++.|.|...+-..-.-+.+.|+
T Consensus 416 ~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg-------------- 481 (788)
T PLN02859 416 FNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG-------------- 481 (788)
T ss_pred ceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcC--------------
Confidence 00 01 1235554333222 2379999999998888777777777776
Q ss_pred CCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020977 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p 289 (319)
+..|...+. ++ .++ +| .||||+..
T Consensus 482 ----~~~P~~~~f---~r-Ln~-~~-t~LSKRkl 505 (788)
T PLN02859 482 ----LYQPYVWEY---SR-LNV-TN-TVMSKRKL 505 (788)
T ss_pred ----CCCCcEEee---ee-ECC-CC-CcccCcCc
Confidence 334766554 43 365 66 69999973
No 51
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.83 E-value=7.1e-05 Score=68.18 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=80.4
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecccee-cCC-----CCHHHHH-HHHHHHHHHHHHcCCCC
Q 020977 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAI-TLP-----YDTQQLS-KATRETAAIYLACGIDN 149 (319)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~i-lIaDlhA~-t~~-----~~~~~i~-~~~~~~~~~~lA~GlDp 149 (319)
|++--|+|++||||....+ .-+.++.+ |++|++ ...|.|.. +.. ..+.++. .....+.+++.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 5667789999999987754 22333333 788754 33433322 210 1233333 34467788888999987
Q ss_pred CCcEEEEcccchhhhHHHHH-Hh-c-cCCHHHHhchhchHHHHHhhCC-CCc----ccccccchH---HHhhhhhccCCC
Q 020977 150 SKASVFVQSHVRAHVELMWL-LS-S-ATPIGWLNKMIQFKEKSHKAGG-ENV----GVALLTYPV---LMASDILLYQSD 218 (319)
Q Consensus 150 ~k~~if~QSd~~~~~el~w~-L~-~-~~s~~~L~R~~~~k~~~~~~~~-~~~----~~g~l~YP~---LQAADIl~~~ad 218 (319)
+ .++..|+........|. |- . ...-. .-..-|. . ..+.+ .+. +=|..+|.. -.+.|=+.+++|
T Consensus 86 d--~~~~es~~~~~~~~~i~~L~~~g~~~~~--~g~~~~~-~-~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~ 159 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVELLEELGLLYEE--DGALWLD-L-TEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGAD 159 (212)
T ss_pred c--eecchhhhhhHHHHHHHHHHHCCCEEEe--CCcEEEe-c-hhhCCCCCeEEEECCCCccchHHHHHHHHHHHhcCCC
Confidence 5 34556654222111211 11 0 00000 0000000 0 00100 010 125566652 222222335788
Q ss_pred EE--EecCcchHHHHHHHHHHHHhhh
Q 020977 219 FV--PVGEDQKQHLELTRELAERVNY 242 (319)
Q Consensus 219 lv--pvG~DQ~~hleLaRdia~r~n~ 242 (319)
.+ .+|.||..|+.--+.+++.++.
T Consensus 160 ~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 160 KIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 88 9999999999999999999883
No 52
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.81 E-value=6.6e-05 Score=73.99 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=31.6
Q ss_pred hccCCCEEEecCcchH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020977 213 LLYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 213 l~~~adlvpvG~DQ~~---hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p 289 (319)
..+++|+.|.|.|+-. -...+.+||+++ || .+.|..+.-. +-.+ +|.+|||||.
T Consensus 231 ~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~-~g~~kmSsSk- 287 (360)
T PF01921_consen 231 AALGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLD-KGGGKMSSSK- 287 (360)
T ss_dssp HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE-S----------
T ss_pred hhcCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEe-CCCcccccCC-
Confidence 3357999999999999 999999999664 33 2235544321 2244 4556999997
Q ss_pred CCCCeeecCC-----CHHHHH
Q 020977 290 SDQSRINLLD-----PKDVSH 305 (319)
Q Consensus 290 ~~~s~I~L~D-----spe~I~ 305 (319)
++.|.+.| +||.++
T Consensus 288 --G~~~t~~e~L~~~~PE~lr 306 (360)
T PF01921_consen 288 --GNGITPEEWLEYAPPESLR 306 (360)
T ss_dssp -------HHHHHTTS-HHHHH
T ss_pred --CCccCHHHHHHhcCHHHHH
Confidence 57776653 566654
No 53
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.79 E-value=0.00016 Score=74.07 Aligned_cols=192 Identities=17% Similarity=0.163 Sum_probs=100.9
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEeccceecCC------CCHHHHH-HHHHHHHHHHHHcC
Q 020977 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDLHAITLP------YDTQQLS-KATRETAAIYLACG 146 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~i--lIaDlhA~t~~------~~~~~i~-~~~~~~~~~~lA~G 146 (319)
.-|+|--|+|.+|+||...++ .-+.++.+ |++|+. -+.|+-..+.. ..++.+. .....+.++|..+|
T Consensus 115 Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~Lg 194 (507)
T PRK01611 115 VEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLG 194 (507)
T ss_pred EEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346688999999999998765 22334333 788643 56666433320 1233333 34567888999999
Q ss_pred CCCCCcEEEEcccchhhhHHHHHHhccCCHHHHhch-hch-HHH------HHhhCCC-Cc----ccccccchHHHhhhhh
Q 020977 147 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQF-KEK------SHKAGGE-NV----GVALLTYPVLMASDIL 213 (319)
Q Consensus 147 lDp~k~~if~QSd~~~~~el~w~L~~~~s~~~L~R~-~~~-k~~------~~~~~~~-~~----~~g~l~YP~LQAADIl 213 (319)
+.++ .+++.|+........+.+. +|... ..+ ... ...++++ +. +=|..+|.. .||-
T Consensus 195 I~~D--~~~~es~~~~~~~~~~~~~------~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~t---~Dia 263 (507)
T PRK01611 195 VHFD--VWFSESELYYNGKVDEVVE------DLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYFT---RDIA 263 (507)
T ss_pred Ceee--EEeecCcchhcchHHHHHH------HHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccchH---HHHH
Confidence 9875 3455555422111111111 11110 001 000 0111111 00 125556633 3553
Q ss_pred cc-------CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 020977 214 LY-------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (319)
Q Consensus 214 ~~-------~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSK 286 (319)
+. +--+-.+|.||..|+.-...+++.++.. . ...-..++... .++-+ .+| +||||
T Consensus 264 ~~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~--~-------------~~~~~~~h~~~-glv~~-~~g-~KMSk 325 (507)
T PRK01611 264 YHLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYD--P-------------DALEVLLHQMV-GLVRG-GEG-VKMST 325 (507)
T ss_pred HHHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCC--c-------------ccceEEEEEEE-EeeEC-CCC-CcccC
Confidence 32 3344589999999999999999998732 0 00000222211 22222 245 79999
Q ss_pred CCCCCCCeeecCCCHHH
Q 020977 287 SAPSDQSRINLLDPKDV 303 (319)
Q Consensus 287 S~p~~~s~I~L~Dspe~ 303 (319)
|. ++.|.+.|==++
T Consensus 326 R~---Gn~i~l~dll~~ 339 (507)
T PRK01611 326 RA---GNVVTLDDLLDE 339 (507)
T ss_pred CC---CceeEHHHHHHH
Confidence 98 688887664333
No 54
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00029 Score=71.94 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=52.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHH---HHHHHhc-cCcE-EEEEeccceecC--CC---CHHHHHHH------------
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIK---NWIALQN-SYET-LFFIVDLHAITL--PY---DTQQLSKA------------ 134 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~---~~~~lQ~-g~~~-~ilIaDlhA~t~--~~---~~~~i~~~------------ 134 (319)
...++=||+-|||.+||||+-=.+. -...|.+ |+++ +|+++|.+-=+. +. +++.++++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 5778999999999999999843221 1223444 7776 778888876554 21 23443332
Q ss_pred ------HHH----HHHHHHHcCCCCCCcEEEEcccch
Q 020977 135 ------TRE----TAAIYLACGIDNSKASVFVQSHVR 161 (319)
Q Consensus 135 ------~~~----~~~~~lA~GlDp~k~~if~QSd~~ 161 (319)
++. +.+.+--+|+++ +++.+|+.+
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~Y 132 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATELY 132 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHhh
Confidence 333 344444569875 788888864
No 55
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.61 E-value=0.00057 Score=65.51 Aligned_cols=63 Identities=25% Similarity=0.387 Sum_probs=39.0
Q ss_pred CCCcchhhhHHHHH-----HHHHHHhccCcEEE-EEeccceecC-----C--C-------------CH-HHHHHHHHHHH
Q 020977 87 PTGSIHLGNYLGAI-----KNWIALQNSYETLF-FIVDLHAITL-----P--Y-------------DT-QQLSKATRETA 139 (319)
Q Consensus 87 PTG~lHLGnylg~i-----~~~~~lQ~g~~~~i-lIaDlhA~t~-----~--~-------------~~-~~i~~~~~~~~ 139 (319)
|+|.+||||+.+.+ .++.+++ |++|.+ .-.|.|..-. . . .+ +-.+++...+.
T Consensus 11 ~~g~~HiGH~~~~i~~D~i~R~~r~~-G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (312)
T cd00668 11 ANGSLHLGHALTHIIADFIARYKRMR-GYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHK 89 (312)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhC-CCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 56999999998733 4444433 778744 4567776532 0 0 11 22344556677
Q ss_pred HHHHHcCCCCC
Q 020977 140 AIYLACGIDNS 150 (319)
Q Consensus 140 ~~~lA~GlDp~ 150 (319)
+++.++|++.+
T Consensus 90 ~~l~~lgI~~D 100 (312)
T cd00668 90 EDFRRLGISYD 100 (312)
T ss_pred HHHHHhCcccc
Confidence 88889998655
No 56
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.59 E-value=0.00022 Score=73.95 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=65.0
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020977 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 81 i~tGi--~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
+.+=| .|||.|||||...++.+|.--+. +..+++-|-|. |+ ....+....+.+++..+|++++. .+++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT-------d~~r~~~e~~~~I~~dL~wLGi~~d~-~~~~ 101 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT-------NPEKEDQEYVDSIKEDVRWLGFDWSG-ELRY 101 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CCCcCChHHHHHHHHHHHHcCCCCCC-Ccee
Confidence 44555 45699999999999999875554 66777777776 43 24456777888899999999953 4789
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHh
Q 020977 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (319)
Q Consensus 157 QSd~~~-~~el~w~-------L~~~~s~~~L~ 180 (319)
||+..+ +.+.+.. +.|.++-.+++
T Consensus 102 qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~ 133 (554)
T PRK05347 102 ASDYFDQLYEYAVELIKKGKAYVDDLSAEEIR 133 (554)
T ss_pred eecCHHHHHHHHHHHHHcCCEeeCCCCHHHHH
Confidence 999654 3333332 44888877764
No 57
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.51 E-value=0.00026 Score=72.94 Aligned_cols=89 Identities=9% Similarity=-0.030 Sum_probs=63.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~- 162 (319)
.|||.|||||...++.+|.--+. +..+++-|-|. |+ ....+....+.+++..+|++++. .+++||+..+
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDT-------d~~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~ 79 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDT-------NPVKEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDE 79 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC-------CcccCChHHHHHHHHHHHHcCCCCCC-CceEccccHHH
Confidence 58899999999999999875554 66777777776 33 33456777888999999999953 3688999644
Q ss_pred hhHHHHH-------HhccCCHHHHhch
Q 020977 163 HVELMWL-------LSSATPIGWLNKM 182 (319)
Q Consensus 163 ~~el~w~-------L~~~~s~~~L~R~ 182 (319)
+.+.+-. +.|.++-.++++.
T Consensus 80 ~~~~a~~Li~~G~AY~c~cs~eel~~~ 106 (522)
T TIGR00440 80 LYRYAEELIKKGLAYVDELTPEEIREY 106 (522)
T ss_pred HHHHHHHHHHcCCEEeecCCHHHHHHh
Confidence 3222211 4488887776433
No 58
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.50 E-value=0.00026 Score=73.53 Aligned_cols=93 Identities=12% Similarity=0.018 Sum_probs=65.8
Q ss_pred eEEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+=|. |||.|||||...++.+|..-+. +..+++-|-|. |+ ....+....+.+++..+|+++++ ++
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDT-------Dp~r~~~e~~~~I~~dL~wLGi~~D~--~~ 121 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT-------NPETEEQVYIDAIMEMVKWMGWKPDW--VT 121 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC--CC
Confidence 3555554 5699999999999989875554 66777787776 44 24456777888999999999984 57
Q ss_pred Ecccchh-hhHHHHH-------HhccCCHHHHhc
Q 020977 156 VQSHVRA-HVELMWL-------LSSATPIGWLNK 181 (319)
Q Consensus 156 ~QSd~~~-~~el~w~-------L~~~~s~~~L~R 181 (319)
+||++.+ +.+.+-. +.|.++-.++++
T Consensus 122 ~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~ 155 (574)
T PTZ00437 122 FSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQ 155 (574)
T ss_pred cCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHH
Confidence 8999754 3222221 448888777653
No 59
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.46 E-value=0.0013 Score=66.86 Aligned_cols=74 Identities=8% Similarity=-0.031 Sum_probs=47.8
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cccee-c-C-----CCCHHH-HHHHHHHHHHHH
Q 020977 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQQ-LSKATRETAAIY 142 (319)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~ilIa-DlhA~-t-~-----~~~~~~-i~~~~~~~~~~~ 142 (319)
..+++| +|--|.|.+||||..+.+ --+.++++ |++|++..+ |.|.- + . ..++.+ .++++..+.+++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 445666 898899999999987654 22333333 788888665 43321 1 0 124433 455677889999
Q ss_pred HHcCC-CCC
Q 020977 143 LACGI-DNS 150 (319)
Q Consensus 143 lA~Gl-Dp~ 150 (319)
.++|+ .|+
T Consensus 102 ~~Lgi~~~d 110 (463)
T PRK00260 102 DALNVLPPD 110 (463)
T ss_pred HHcCCCCCC
Confidence 99999 454
No 60
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.44 E-value=0.00034 Score=72.73 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=65.5
Q ss_pred ceEEEeeCC--CCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020977 79 KRIVSGVQP--TGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 79 ~~i~tGi~P--TG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
-.+.+=|.| ||.+||||...++.+|.--+. +..+++-|-|. |+ ....+....+.+++.++|++|+ .+
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDT-------Dp~R~~~e~~~~I~edL~wLGi~~d--~~ 162 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDT-------DPRRVKPEAYDMILEDLDWLGVKGD--EV 162 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcC-------CcccccHHHHHHHHHHHHHcCCCCC--cc
Confidence 346666655 599999999999988865444 56677777776 33 3345577788999999999998 47
Q ss_pred EEcccchhh-hHHHH-------HHhccCCHHHHh
Q 020977 155 FVQSHVRAH-VELMW-------LLSSATPIGWLN 180 (319)
Q Consensus 155 f~QSd~~~~-~el~w-------~L~~~~s~~~L~ 180 (319)
++||+..+. .+..- .+.|.++-.+++
T Consensus 163 ~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 163 VYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 899996432 22211 145888887774
No 61
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.44 E-value=0.00036 Score=74.97 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=65.6
Q ss_pred eEEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+=|. |||.+||||...++.+|.--+. +..+++-|-|. |+ ....+....+.+++..+|++++. .++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDT-------d~~r~~~e~~~~I~~dl~wLG~~wd~-~~~ 102 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDT-------NPETEDTEYVEAIKDDVRWLGFDWGE-HLY 102 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCC-------CCCcCChHHHHHHHHHHHHcCCCCCC-Cce
Confidence 3555554 5699999999999989865544 66777777776 43 23456777888999999999875 368
Q ss_pred Ecccchhh-hHHHH-------HHhccCCHHHHhch
Q 020977 156 VQSHVRAH-VELMW-------LLSSATPIGWLNKM 182 (319)
Q Consensus 156 ~QSd~~~~-~el~w-------~L~~~~s~~~L~R~ 182 (319)
+||+..+. .+.+- .+.|.++-.++++.
T Consensus 103 ~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~ 137 (771)
T PRK14703 103 YASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137 (771)
T ss_pred EeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHH
Confidence 99996442 22111 15588887766433
No 62
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.30 E-value=0.001 Score=64.21 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=40.3
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 020977 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 87 PTG~lHLGnylg~i~~--~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~-i~~~~~~~~~~~lA~GlDp~ 150 (319)
|+|.+||||..+.+.. +.++++ |++|.+ .-.|.|..-. ..++.+ .+++...+.+++.++|+.++
T Consensus 11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 5799999998775521 333332 788755 4466664321 124433 45566788888999999775
No 63
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.19 E-value=0.0054 Score=56.35 Aligned_cols=71 Identities=11% Similarity=0.002 Sum_probs=44.2
Q ss_pred ceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccceecC-------CCCHH-HHHHHHHHHHHHHHHc
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIYLAC 145 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~-~i~~~~~~~~~~~lA~ 145 (319)
....+|-=|-|.+||||....+ .-+.++++ |++|++.. .|.|..=. ..+++ -.+++...+.+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4455677777999999976544 11333332 78887655 44554311 12453 4456677888889999
Q ss_pred CCCC
Q 020977 146 GIDN 149 (319)
Q Consensus 146 GlDp 149 (319)
|+.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9986
No 64
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.21 E-value=0.083 Score=53.97 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=45.5
Q ss_pred ceEEEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee-c-C-----CCCHHHH-HHHHHHHHHHHHHc
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQQL-SKATRETAAIYLAC 145 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~--~~~~lQ~--g~~~~ilIa-DlhA~-t-~-----~~~~~~i-~~~~~~~~~~~lA~ 145 (319)
....+|.=|-|.+||||..+.+. -+.++++ |++|.+..+ |.|.- + . ..++.++ +.+...+.+++.++
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~L 102 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKAL 102 (465)
T ss_pred eEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34556777779999999876551 2333332 788866554 55422 1 0 1244443 45667888899999
Q ss_pred CCCCCC
Q 020977 146 GIDNSK 151 (319)
Q Consensus 146 GlDp~k 151 (319)
|+.++.
T Consensus 103 gI~~d~ 108 (465)
T TIGR00435 103 NVLPPD 108 (465)
T ss_pred CCCCCc
Confidence 997653
No 65
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=94.29 E-value=0.13 Score=54.72 Aligned_cols=84 Identities=21% Similarity=0.391 Sum_probs=53.7
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEecc-ceecC-------CCCHH-HHHHHHHHHHHHH
Q 020977 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIVDL-HAITL-------PYDTQ-QLSKATRETAAIY 142 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIaDl-hA~t~-------~~~~~-~i~~~~~~~~~~~ 142 (319)
++..|.+++ -|+|.+||||..+.+.. +.++++ |++|+++-++. |..-. ..++. -..+++..+.+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 356677777 58999999998775522 333333 78887766544 43321 12453 4466778899999
Q ss_pred HHcCCCCCCcEEEEcccchhh
Q 020977 143 LACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 143 lA~GlDp~k~~if~QSd~~~~ 163 (319)
.++|++++. |....-++|
T Consensus 82 ~~l~i~~d~---f~rtt~~~h 99 (673)
T PRK00133 82 AGFGISFDN---YGSTHSEEN 99 (673)
T ss_pred HHhCCCCCC---CccCCcHHH
Confidence 999998873 444443344
No 66
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=93.69 E-value=0.11 Score=52.57 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=63.0
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE----
Q 020977 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS---- 153 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~---- 153 (319)
|+=--=-|||.+|||-...++-|++--.+ +.+++.-|-|- |. ..+....+.+.+++..+||++|..-
T Consensus 35 RvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDT-------Dq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG 107 (524)
T KOG1149|consen 35 RVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDT-------DQKRLIRGSEEAIYEDLKWANLDWDEGPGVGG 107 (524)
T ss_pred EEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccc-------cccccccchHHHHHHHHHhcCCCcccCCCcCC
Confidence 44444457799999999999988765555 67788888775 32 2344455667788899999998754
Q ss_pred ---EEEcccchhhhH-HHHH-------HhccCCHHHHhc
Q 020977 154 ---VFVQSHVRAHVE-LMWL-------LSSATPIGWLNK 181 (319)
Q Consensus 154 ---if~QSd~~~~~e-l~w~-------L~~~~s~~~L~R 181 (319)
-|.||+-.+... -+.. +-|+++-.||..
T Consensus 108 ~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~ 146 (524)
T KOG1149|consen 108 PFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDL 146 (524)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHH
Confidence 378998544321 1111 347888777543
No 67
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.05 E-value=0.33 Score=50.92 Aligned_cols=76 Identities=22% Similarity=0.397 Sum_probs=52.1
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCCc
Q 020977 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 86 ~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~il-IaDlhA~t~-------~~~~~~-i~~~~~~~~~~~lA~GlDp~k~ 152 (319)
-|.|.+||||....| .-|.++|+ |++++++ =.|-|..-. ..+|++ +.++......+|.+++|+-|.
T Consensus 15 Y~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD~- 93 (558)
T COG0143 15 YPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFDN- 93 (558)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccc-
Confidence 367999999987665 34777776 8888664 456666532 236654 466777899999999998763
Q ss_pred EEEEcccchhhh
Q 020977 153 SVFVQSHVRAHV 164 (319)
Q Consensus 153 ~if~QSd~~~~~ 164 (319)
|....-+.|.
T Consensus 94 --F~rTt~~~h~ 103 (558)
T COG0143 94 --FIRTTSPEHK 103 (558)
T ss_pred --cccCCCHHHH
Confidence 5555544454
No 68
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=92.77 E-value=0.46 Score=47.49 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=44.4
Q ss_pred CCCCcchhhhHHHHH-----HHHHHHhccCcEEE-EEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCCC
Q 020977 86 QPTGSIHLGNYLGAI-----KNWIALQNSYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 86 ~PTG~lHLGnylg~i-----~~~~~lQ~g~~~~i-lIaDlhA~t~-------~~~~~-~i~~~~~~~~~~~lA~GlDp~k 151 (319)
-|.|.+||||..+.+ .+|.+++ |+++++ .=.|-|..-. ..+|+ -+.++...+.+.+.++||+.|.
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~-G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~ 87 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLR-GHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDR 87 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHT-T-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SE
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhc-ccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 378999999987654 2333322 788755 5578887753 23665 4566778899999999999873
Q ss_pred cEEEEcccchhh
Q 020977 152 ASVFVQSHVRAH 163 (319)
Q Consensus 152 ~~if~QSd~~~~ 163 (319)
|.+..-.+|
T Consensus 88 ---F~rTt~~~h 96 (391)
T PF09334_consen 88 ---FIRTTDDRH 96 (391)
T ss_dssp ---EEETTSHHH
T ss_pred ---eeCCCCHHH
Confidence 555544444
No 69
>PLN02224 methionine-tRNA ligase
Probab=92.47 E-value=0.58 Score=49.63 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=49.7
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-Eeccceec--C-----CCCH-HHHHHHHHHHHHHHH
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAIT--L-----PYDT-QQLSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~il-IaDlhA~t--~-----~~~~-~~i~~~~~~~~~~~l 143 (319)
+..|-+++ -|+|.+||||..+.+.. +.++++ |++|++. =.|-|..- . ..++ +..++++..+.+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 45666676 67899999998776522 333333 7888664 46777632 1 1234 555677788888999
Q ss_pred HcCCCCC
Q 020977 144 ACGIDNS 150 (319)
Q Consensus 144 A~GlDp~ 150 (319)
++|+++|
T Consensus 150 ~l~I~~D 156 (616)
T PLN02224 150 DLDIAYD 156 (616)
T ss_pred HcCCCCC
Confidence 9999987
No 70
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=91.99 E-value=0.65 Score=50.65 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=49.1
Q ss_pred CceEEEeeCCC--CcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHH
Q 020977 78 KKRIVSGVQPT--GSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (319)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~-~~i~~~~~~~~~~~ 142 (319)
++.++.|+ |+ |.+||||.++.+.+ +.++|. |+++.+.. .|-|.+-. ..++ +-..++...+.+++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56777776 76 99999999876533 444554 78887655 46665432 1233 45566778899999
Q ss_pred HHcCCCCC
Q 020977 143 LACGIDNS 150 (319)
Q Consensus 143 lA~GlDp~ 150 (319)
.++|+..|
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99999544
No 71
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.97 E-value=0.38 Score=50.11 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=44.5
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi--~PTG~lHLGnylg~i~~~~~lQ~g-~~~~ilIaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.|.+-| +|||.+||||.--++.+|---|.. .++++-. |. |+|. +-++.+ ..+.+++--+||.|+++ -
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRF-DD---TNPaKE~~eFe---~~IleDl~~LgIkpd~~--T 270 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRF-DD---TNPAKENEEFE---DVILEDLSLLGIKPDRV--T 270 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEe-cC---CCcchhhHHHH---HHHHHHHHHhCcCccee--e
Confidence 555555 678999999999888777644442 3444443 33 2322 223333 34566666789999964 3
Q ss_pred Ecccch
Q 020977 156 VQSHVR 161 (319)
Q Consensus 156 ~QSd~~ 161 (319)
.-||+.
T Consensus 271 yTSDyF 276 (712)
T KOG1147|consen 271 YTSDYF 276 (712)
T ss_pred echhhH
Confidence 457654
No 72
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=90.62 E-value=0.74 Score=47.68 Aligned_cols=71 Identities=24% Similarity=0.398 Sum_probs=47.4
Q ss_pred eEEEeeCCC--CcchhhhHHHH-H-----HHHHHHhccCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHH
Q 020977 80 RIVSGVQPT--GSIHLGNYLGA-I-----KNWIALQNSYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIY 142 (319)
Q Consensus 80 ~i~tGi~PT--G~lHLGnylg~-i-----~~~~~lQ~g~~~~ilI-aDlhA~t~-------~~~~~~-i~~~~~~~~~~~ 142 (319)
.+.+.-=|+ |.+||||..+. + .++.+++ |++|++.. .|.|..-. ..++.+ .++++..+.+++
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~-G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLK-GNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhc-CCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 455555566 89999998875 2 4444443 78887754 46664432 224444 466788899999
Q ss_pred HHcCCCCCC
Q 020977 143 LACGIDNSK 151 (319)
Q Consensus 143 lA~GlDp~k 151 (319)
.++|++++.
T Consensus 84 ~~l~i~~d~ 92 (556)
T PRK12268 84 KKLGISYDL 92 (556)
T ss_pred HHcCCcCCC
Confidence 999999874
No 73
>PLN02610 probable methionyl-tRNA synthetase
Probab=89.83 E-value=0.81 Score=49.98 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=52.6
Q ss_pred CceEEEee-CCCCcchhhhHHHH-H--HHHHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHH
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGA-I--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIY 142 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~-i--~~~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~-i~~~~~~~~~~~ 142 (319)
+..|-+.+ -|+|.+||||..+. + .-+.++++ |++++|+. .|-|..-. ..++++ +.++...+.+.|
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444443 35699999999863 4 22455554 78887755 56676542 235544 455667788899
Q ss_pred HHcCCCCCCcEEEEcccchhhhH
Q 020977 143 LACGIDNSKASVFVQSHVRAHVE 165 (319)
Q Consensus 143 lA~GlDp~k~~if~QSd~~~~~e 165 (319)
.++||+.|. |....-++|.+
T Consensus 98 ~~l~i~~D~---f~rT~~~~h~~ 117 (801)
T PLN02610 98 DWFDISFDK---FGRTSTPQQTE 117 (801)
T ss_pred HHcCCcccc---CccCCCHHHHH
Confidence 999999873 33334344543
No 74
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=88.81 E-value=2.9 Score=43.34 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=45.3
Q ss_pred CCCCceEEEeeCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE--EeccceecC----------------CCCHH-
Q 020977 75 SSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLHAITL----------------PYDTQ- 129 (319)
Q Consensus 75 ~~~~~~i~tGi~PT--G~lHLGnylg~i--~~~~~lQ~--g~~~~il--IaDlhA~t~----------------~~~~~- 129 (319)
.+..+++|+ ..|| +.+||||....+ --+.++.+ |++|++. |+|+--++. ..++.
T Consensus 20 ~~~~v~mYv-CGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e 98 (490)
T PRK14536 20 EHGHVRLYG-CGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLE 98 (490)
T ss_pred CCCceEEEe-eCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHH
Confidence 344566665 3555 789999987754 11333322 7888775 577711111 12443
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 020977 130 QLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 130 ~i~~~~~~~~~~~lA~GlDp~ 150 (319)
-.++++..+.+++.++|+.+.
T Consensus 99 ~a~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 99 IAAHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 334566788889999999764
No 75
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=87.85 E-value=2.3 Score=43.31 Aligned_cols=65 Identities=15% Similarity=0.320 Sum_probs=40.9
Q ss_pred CCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-EeccceecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCCC
Q 020977 87 PTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 87 PTG~lHLGnylg~i~--~~~~lQ~--g~~~~il-IaDlhA~t~-------~~~~-~~i~~~~~~~~~~~lA~GlDp~k 151 (319)
|+|.+||||..+.+. -+.+.++ |+++.+. -.|.|..-. ..++ +-.+.+...+.+++.++|++++.
T Consensus 12 ~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~ 89 (511)
T PRK11893 12 PNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD 89 (511)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 459999999766442 1333333 7888664 355554311 1244 34455667888999999998873
No 76
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=87.69 E-value=1.1 Score=46.19 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=41.1
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHHHH-HHHHHHHHHHHHHcCCCCCC
Q 020977 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQL-SKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 87 PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~i-~~~~~~~~~~~lA~GlDp~k 151 (319)
|+|.+||||....+.. +.+.++ |++|.+.. .|.|..-. ..++.++ +++...+.+++.++|++++.
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 87 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR 87 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 7899999998765421 333333 78886644 45543321 1245444 45567888899999998763
No 77
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=87.65 E-value=1.2 Score=43.07 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=41.7
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-EeccceecC-------CCCHHHH-HHHHHHHHHHHHHcCCCCCC
Q 020977 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAITL-------PYDTQQL-SKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 87 PTG~lHLGnylg~i~~--~~~lQ~--g~~~~il-IaDlhA~t~-------~~~~~~i-~~~~~~~~~~~lA~GlDp~k 151 (319)
|+|.+||||..+.+.. +.++++ |++|.+. =.|.|..-. ..+++++ +.+...+.+++.++|++++.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 4599999999886522 233333 7887654 356664421 1255444 45567788899999998874
No 78
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=87.37 E-value=1.5 Score=48.25 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=46.3
Q ss_pred ceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHHHH
Q 020977 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYLA 144 (319)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~t~-------~~~~-~~i~~~~~~~~~~~lA 144 (319)
..++.|+ -|||.+|+||.++.+.+ +.+++. |++|.+..+ |-|.+-. ..++ +-..+++..+.+++.+
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 110 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQA 110 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4555553 23599999999876533 444444 888877654 5555421 1233 4556778889999999
Q ss_pred cCCCCC
Q 020977 145 CGIDNS 150 (319)
Q Consensus 145 ~GlDp~ 150 (319)
+|+..|
T Consensus 111 lG~~~D 116 (842)
T TIGR00396 111 LGFSYD 116 (842)
T ss_pred hCCccc
Confidence 997443
No 79
>PLN02563 aminoacyl-tRNA ligase
Probab=87.35 E-value=3.8 Score=45.77 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=48.2
Q ss_pred CceEEEee-CCCCc-chhhhHHHHHHH--HHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHH
Q 020977 78 KKRIVSGV-QPTGS-IHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIY 142 (319)
Q Consensus 78 ~~~i~tGi-~PTG~-lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~t~-------~~~~-~~i~~~~~~~~~~~ 142 (319)
++.+++|+ -|+|. +|+||.++.+.. +.+++. |++|++..+ |-|.+-. ...+ +...+++..+.+++
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~ 190 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL 190 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence 35667776 35697 999998875522 444544 888877654 5566532 1122 34567778889999
Q ss_pred HHcCC--CCCC
Q 020977 143 LACGI--DNSK 151 (319)
Q Consensus 143 lA~Gl--Dp~k 151 (319)
..+|+ |.++
T Consensus 191 ~~lG~s~DW~r 201 (963)
T PLN02563 191 KSLGFSYDWDR 201 (963)
T ss_pred HHhCcEeeCCC
Confidence 99995 6555
No 80
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=87.01 E-value=1.6 Score=46.22 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=42.3
Q ss_pred CCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCCC
Q 020977 87 PTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 87 PTG~lHLGnylg~i~--~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~-~i~~~~~~~~~~~lA~GlDp~k 151 (319)
|+|.+||||..+.+. -+.++++ |+++++ +=.|.|..-. ..+++ -+.++...+.+++.++|+++|.
T Consensus 15 ~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~ 92 (648)
T PRK12267 15 PNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDK 92 (648)
T ss_pred CCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 459999999876542 1333333 788755 5567776532 12443 3455667888899999998873
No 81
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=86.87 E-value=0.55 Score=49.11 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=45.3
Q ss_pred CEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccc-cCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020977 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL-IPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 218 dlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l-~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~ 296 (319)
-|-.+|.||..|+.-...+++.++. +.|.-+ +... ++-.+ .|||||. ++.|.
T Consensus 330 iI~V~g~~q~~h~~~v~~~l~~lG~------------------~~~~~l~h~~~-----~~V~~-~kmSkr~---Gn~V~ 382 (566)
T TIGR00456 330 MIYVWGSDHHLHIAQFFAILEKLGF------------------YKKKELIHLNF-----GMVPL-GSMKTRR---GNVIS 382 (566)
T ss_pred EEEEecCcHHHHHHHHHHHHHHcCC------------------CCCCceEEEEE-----EEEEC-CCCCccC---Cceee
Confidence 4467999999999999999999883 224322 2211 22234 6999998 79999
Q ss_pred cCCCHHHHHHhhhc
Q 020977 297 LLDPKDVSHKFFRR 310 (319)
Q Consensus 297 L~Dspe~I~kKI~~ 310 (319)
+.|=.++..++...
T Consensus 383 ~~dll~~~~~ra~~ 396 (566)
T TIGR00456 383 LDNLLDEASKRAGN 396 (566)
T ss_pred HHHHHHHHHHHHHH
Confidence 98766665554433
No 82
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=86.87 E-value=0.53 Score=52.02 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=34.9
Q ss_pred ccCCCEEEecCcch---HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCC
Q 020977 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (319)
Q Consensus 214 ~~~adlvpvG~DQ~---~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~ 290 (319)
.+-+|+...|.||. .|-.+-..++- + |.. .|..++. + .++... +| +|||||.
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~----g~~--------------P~k~vl~-H-G~vld~-~G-~KMSKSl-- 597 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-R----GKA--------------PYKQVLT-H-GFTVDG-KG-RKMSKSL-- 597 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-c----CCC--------------ccceeEE-e-eeEECC-CC-CCCCCCC--
Confidence 45699999999996 44555554443 2 221 2333332 1 345443 56 8999998
Q ss_pred CCCeeec
Q 020977 291 DQSRINL 297 (319)
Q Consensus 291 ~~s~I~L 297 (319)
+|.|..
T Consensus 598 -GNvIdP 603 (912)
T PRK05743 598 -GNVIDP 603 (912)
T ss_pred -CCcCCH
Confidence 676643
No 83
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=86.65 E-value=0.56 Score=46.60 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=37.2
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-----------C-----CCHHH--------HHHHHHH
Q 020977 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-----------P-----YDTQQ--------LSKATRE 137 (319)
Q Consensus 87 PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~-----------~-----~~~~~--------i~~~~~~ 137 (319)
|+|.+||||..+.+.. +.+++. |++|++.. .|-|++-. . .++++ .+++...
T Consensus 12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (382)
T cd00817 12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGK 91 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 5699999999876532 444444 78886644 56664311 0 12232 2344556
Q ss_pred HHHHHHHcCCC
Q 020977 138 TAAIYLACGID 148 (319)
Q Consensus 138 ~~~~~lA~GlD 148 (319)
+.+++.++|+.
T Consensus 92 ~~~~~~~lgi~ 102 (382)
T cd00817 92 IREQLKRLGAS 102 (382)
T ss_pred HHHHHHHhCce
Confidence 77788888974
No 84
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=86.37 E-value=1.3 Score=43.37 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=23.1
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEecccee
Q 020977 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAI 122 (319)
Q Consensus 87 PTG~lHLGnylg~i~~--~~~lQ~--g~~~~i-lIaDlhA~ 122 (319)
|+|.+||||..+.+.. +.++++ |++|.+ .-.|-|.+
T Consensus 12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 4699999999875522 333333 788855 44566655
No 85
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=86.08 E-value=0.41 Score=48.76 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=35.0
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~ 294 (319)
+..|+...|.||...+-.. .+|.-+.. | .+.|..++.. .++ .+ +| +|||||. +|.
T Consensus 253 ~~~D~~~~G~D~~~~h~~~-~~a~~~a~--~--------------~~~p~~~~~~--g~v-~~-~G-~KMSKS~---GN~ 307 (511)
T PRK11893 253 WPADVHLIGKDILRFHAVY-WPAFLMAA--G--------------LPLPKRVFAH--GFL-TL-DG-EKMSKSL---GNV 307 (511)
T ss_pred CCCcceEecccccccchhH-HHHHHHhC--C--------------CCCCCEEEee--ccE-EE-CC-eeecccC---CcE
Confidence 3578999999998853322 12222211 1 1236554432 334 24 67 7999998 688
Q ss_pred eecCC
Q 020977 295 INLLD 299 (319)
Q Consensus 295 I~L~D 299 (319)
|.+.|
T Consensus 308 i~~~d 312 (511)
T PRK11893 308 IDPFD 312 (511)
T ss_pred EcHHH
Confidence 87743
No 86
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=83.63 E-value=0.95 Score=44.21 Aligned_cols=59 Identities=29% Similarity=0.374 Sum_probs=32.8
Q ss_pred cCCCEEEecCcchH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 215 ~~adlvpvG~DQ~~---hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~ 291 (319)
+.+|+.+.|.||.. |..+-.-++ + +|.. .|..+.. + ..+... +| +|||||.
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~~--~---~~~~--------------p~~~~~~-h-g~~~~~-~g-~KmSKS~--- 304 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLSTA--L---FGKA--------------PYKNVIV-H-GFVLDE-DG-RKMSKSL--- 304 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHHH--h---cCCC--------------ccceEEE-E-eeEECC-CC-CCCCCCC---
Confidence 34689999999974 444433322 1 1211 1223222 1 234332 57 7999998
Q ss_pred CCeeecCC
Q 020977 292 QSRINLLD 299 (319)
Q Consensus 292 ~s~I~L~D 299 (319)
+|.|.+.|
T Consensus 305 gn~i~~~~ 312 (338)
T cd00818 305 GNYVDPQE 312 (338)
T ss_pred CCcCCHHH
Confidence 68888754
No 87
>PLN02946 cysteine-tRNA ligase
Probab=83.16 E-value=10 Score=39.90 Aligned_cols=73 Identities=12% Similarity=-0.055 Sum_probs=44.2
Q ss_pred CCCceEEEeeCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccce--ecC-----CCCHHH-HHHHHHHHHH
Q 020977 76 SVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHA--ITL-----PYDTQQ-LSKATRETAA 140 (319)
Q Consensus 76 ~~~~~i~tGi~PT--G~lHLGnylg~i--~~~~~lQ~--g~~~~ilI-aDlhA--~t~-----~~~~~~-i~~~~~~~~~ 140 (319)
+..+.+|+- .|| +.+||||....+ .-+.++.+ |++|.+.. .|.|. ++. ..++.+ .++++..+.+
T Consensus 78 ~~~v~~Y~C-GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~ 156 (557)
T PLN02946 78 EGKVGMYVC-GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLS 156 (557)
T ss_pred CCceeEEEe-CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345666653 677 889999987654 22333333 78886643 33332 121 235544 4567778899
Q ss_pred HHHHcCCCC
Q 020977 141 IYLACGIDN 149 (319)
Q Consensus 141 ~~lA~GlDp 149 (319)
++.++|+.+
T Consensus 157 d~~~LnI~~ 165 (557)
T PLN02946 157 DMAYLHCLP 165 (557)
T ss_pred HHHHCCCCC
Confidence 999999853
No 88
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=83.04 E-value=3 Score=41.46 Aligned_cols=60 Identities=28% Similarity=0.359 Sum_probs=34.5
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~gL~dg~~KMSKS~p~~~ 292 (319)
+.+|+...|.||...+-.. .++..... .|. .| ..+.+ .++.++ +| +|||||. +
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~~-~g~---------------~p~~~v~~h---g~v~~~-~g-~KMSKS~---G 349 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLKL-TGK---------------LPFKEVYLH---GLVRDE-DG-RKMSKSL---G 349 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHHh-hCC---------------CchHHeEee---eeEECC-CC-CCccccC---C
Confidence 3579999999997654433 23332211 111 13 22222 345444 56 7999998 6
Q ss_pred CeeecCC
Q 020977 293 SRINLLD 299 (319)
Q Consensus 293 s~I~L~D 299 (319)
|.|.+.|
T Consensus 350 n~v~~~d 356 (382)
T cd00817 350 NVIDPLD 356 (382)
T ss_pred CCCCHHH
Confidence 8887644
No 89
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=81.55 E-value=1.1 Score=47.16 Aligned_cols=59 Identities=29% Similarity=0.332 Sum_probs=31.0
Q ss_pred cCCCEEEecCcchHHHHH-HHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQHLEL-TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleL-aRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s 293 (319)
|-+|+..-|.||....-. ..-+.-.+ ++.. +| +..+.+ .++... +| +|||||. +|
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l---~~~~-----------pf--k~v~~h---G~vld~-~G-~KMSKS~---GN 568 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVAL---FGKE-----------PF--KKVITH---GFVLDE-DG-RKMSKSK---GN 568 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHH---SSST-----------SB--SEEEEE-----EEET-TS-SB-BTTT---TB
T ss_pred CCcccccCCccchhhHHHHhHhhcccc---ccCC-----------ch--heeeec---cccccc-ce-eecccCC---Cc
Confidence 568999999999765422 22222222 2221 12 334443 345554 67 8999997 67
Q ss_pred eeec
Q 020977 294 RINL 297 (319)
Q Consensus 294 ~I~L 297 (319)
.|.+
T Consensus 569 vi~p 572 (601)
T PF00133_consen 569 VIDP 572 (601)
T ss_dssp --BH
T ss_pred ccCH
Confidence 7754
No 90
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=81.32 E-value=1.2 Score=44.74 Aligned_cols=70 Identities=26% Similarity=0.221 Sum_probs=42.6
Q ss_pred hHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 020977 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (319)
Q Consensus 205 P~LQAADIl~~~adlvpvG~DQ~-~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~K 283 (319)
..-|+..+|--.-||--+|.|-. +|+| .++|...- .+|... -+..+++. . +... +| +|
T Consensus 203 Csam~~~~lg~~~DIH~GG~DL~FPHHe--neiaq~~a-~~g~~~-------------~~~~w~H~--g-~l~~-~G-~K 261 (384)
T PRK12418 203 CSAIALNRLGSGFDIQGGGSDLIFPHHE--FSAAHAEA-ATGERR-------------FARHYVHA--G-MIGL-DG-EK 261 (384)
T ss_pred HHHHHHHHcCCCcccccCccccccchhH--hHHHHHHH-hcCCCC-------------cceEEEEC--C-EECC-CC-Cc
Confidence 46777787777899999999965 5665 34444422 123211 13344432 2 2233 67 79
Q ss_pred CCCCCCCCCCeeecC
Q 020977 284 MSKSAPSDQSRINLL 298 (319)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (319)
||||. +|.|.+.
T Consensus 262 MSKSl---GN~i~~~ 273 (384)
T PRK12418 262 MSKSR---GNLVFVS 273 (384)
T ss_pred ccCcC---CCcCCHH
Confidence 99998 6777764
No 91
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=80.94 E-value=1.2 Score=50.21 Aligned_cols=61 Identities=25% Similarity=0.374 Sum_probs=37.6
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P-~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s 293 (319)
+-+|+...|.||.. +=++|-++..+... | ..| ..++. + .++..- +| +|||||. +|
T Consensus 490 ~P~d~~~~G~Dii~-~W~a~~l~~~~~~~-~---------------~~Pfk~V~~-h-G~v~d~-~G-~KMSKSk---GN 545 (1052)
T PRK14900 490 YPTSVMETGHDIIF-FWVARMMMMGLHFM-G---------------EVPFRTVYL-H-PMVRDE-KG-QKMSKTK---GN 545 (1052)
T ss_pred CCchhhcccccHHh-HHHHHHHHHHHHhc-C---------------CCccceeEe-c-ccEECC-CC-CCccCCC---CC
Confidence 45799999999984 55667666655421 1 134 32332 1 344442 56 8999998 68
Q ss_pred eeecCC
Q 020977 294 RINLLD 299 (319)
Q Consensus 294 ~I~L~D 299 (319)
.|...|
T Consensus 546 vIdP~d 551 (1052)
T PRK14900 546 VIDPLV 551 (1052)
T ss_pred CCCHHH
Confidence 876543
No 92
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=80.87 E-value=1.3 Score=48.44 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.8
Q ss_pred cCCCEEEecCcchH
Q 020977 215 YQSDFVPVGEDQKQ 228 (319)
Q Consensus 215 ~~adlvpvG~DQ~~ 228 (319)
+-+|+...|.||..
T Consensus 563 ~P~d~~i~G~Di~r 576 (861)
T TIGR00392 563 FPADFILEGSDQTR 576 (861)
T ss_pred CCceEEEEecchhc
Confidence 45899999999965
No 93
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.16 E-value=3.2 Score=45.51 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=48.4
Q ss_pred CCceEEEee-CCCCcchhhhHHHHH-----HHHHHHhccCcEEEEEeccceecCC---------CCH-HHHHHHHHHHHH
Q 020977 77 VKKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQNSYETLFFIVDLHAITLP---------YDT-QQLSKATRETAA 140 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnylg~i-----~~~~~lQ~g~~~~ilIaDlhA~t~~---------~~~-~~i~~~~~~~~~ 140 (319)
+++.|..=| -|||.+|+||..+.. ..+.++| |++|.+-++ |||+=.| .+| .-...|+.++..
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~-GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ 111 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQ-GYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKK 111 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhc-CCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 455665555 489999999975432 3343333 788877654 7776443 255 345678889999
Q ss_pred HHHHcCC--CCCC
Q 020977 141 IYLACGI--DNSK 151 (319)
Q Consensus 141 ~~lA~Gl--Dp~k 151 (319)
++.++|+ |.++
T Consensus 112 qlk~lG~siDW~R 124 (814)
T COG0495 112 QLKSLGFSIDWRR 124 (814)
T ss_pred HHHHhCCcccccc
Confidence 9999987 4444
No 94
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=79.02 E-value=1.4 Score=48.64 Aligned_cols=57 Identities=32% Similarity=0.409 Sum_probs=32.9
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHHHhhhh--hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 215 ~~adlvpvG~DQ~~-hleLaRdia~r~n~~--~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~ 291 (319)
+-+|+...|.||.. |+-... |++. ++. -+.|..++.. .++.. +| +|||||.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-----~~~~a~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~--- 582 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-----FNHVAIFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK--- 582 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-----HHHHHhcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---
Confidence 45799999999966 544442 2221 121 1234444431 23322 56 8999998
Q ss_pred CCeeec
Q 020977 292 QSRINL 297 (319)
Q Consensus 292 ~s~I~L 297 (319)
+|.|.+
T Consensus 583 GNvVdp 588 (897)
T PRK12300 583 GNVIPL 588 (897)
T ss_pred CCCCCH
Confidence 677754
No 95
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=78.83 E-value=2.7 Score=46.97 Aligned_cols=45 Identities=31% Similarity=0.326 Sum_probs=29.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.|.+|. -|||.+|+||.+..+.+ +.+++. |+++.+.. .|-|++
T Consensus 61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 34555554 35799999999876533 445554 78887655 566655
No 96
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=78.65 E-value=1.4 Score=42.42 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=33.7
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020977 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I 295 (319)
..++..+|.|+..++.+.- .|--.. .| .+.|..++.. ..+ .+ +| +|||||. ++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 3579999999998754321 111111 11 2335444431 222 33 56 7999998 6888
Q ss_pred ecCC
Q 020977 296 NLLD 299 (319)
Q Consensus 296 ~L~D 299 (319)
.+.|
T Consensus 290 ~~~~ 293 (319)
T cd00814 290 DPDD 293 (319)
T ss_pred CHHH
Confidence 8754
No 97
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=78.59 E-value=1.4 Score=48.41 Aligned_cols=60 Identities=28% Similarity=0.373 Sum_probs=37.0
Q ss_pred ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCC
Q 020977 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 214 ~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~gL~dg~~KMSKS~p~~ 291 (319)
.|-+|+...|.||... =++|-++..... .| ..| ..+.+ .++-.. +| +|||||.
T Consensus 471 ~~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKSl--- 525 (874)
T PRK05729 471 FYPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIH---GLVRDE-QG-RKMSKSK--- 525 (874)
T ss_pred cCCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEe---eeEECC-CC-CCcccCC---
Confidence 3568999999999874 455555544331 11 135 23333 345454 66 7999998
Q ss_pred CCeeecC
Q 020977 292 QSRINLL 298 (319)
Q Consensus 292 ~s~I~L~ 298 (319)
+|.|...
T Consensus 526 GNvIdP~ 532 (874)
T PRK05729 526 GNVIDPL 532 (874)
T ss_pred CCCCCHH
Confidence 6777654
No 98
>PLN02843 isoleucyl-tRNA synthetase
Probab=78.44 E-value=3.5 Score=46.05 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=43.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC--------------CCCHHHHHHHHHH
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL--------------PYDTQQLSKATRE 137 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~--------------~~~~~~i~~~~~~ 137 (319)
++.+..|. -++|.+||||.+..+.+ +++++. |+++.+.. -|-|.+-. ..+++++++.+++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~ 112 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAK 112 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHH
Confidence 34554554 25799999999886633 444443 78876644 45554321 1245555544433
Q ss_pred --------HHHHHHHcCC--CCCC
Q 020977 138 --------TAAIYLACGI--DNSK 151 (319)
Q Consensus 138 --------~~~~~lA~Gl--Dp~k 151 (319)
..+++..+|+ |.++
T Consensus 113 ~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 113 FAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHhCCceecCC
Confidence 3456678898 7776
No 99
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=76.49 E-value=3.6 Score=44.85 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=41.4
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-ccceec---------C--CC--CH--------HH
Q 020977 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAIT---------L--PY--DT--------QQ 130 (319)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~t---------~--~~--~~--------~~ 130 (319)
++.+.+| --|+|.+||||.++.+.+ +.+++. |+++.+..+ |-|.+- + +. +. +-
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 3455552 356799999999876532 444443 888877554 555431 1 11 11 12
Q ss_pred HHHHHHHHHHHHHHcCC
Q 020977 131 LSKATRETAAIYLACGI 147 (319)
Q Consensus 131 i~~~~~~~~~~~lA~Gl 147 (319)
..++...+.+++.++|+
T Consensus 119 ~~~~~~~~~~~~~~lg~ 135 (800)
T PRK13208 119 TDEDEKKFRELWRRLGL 135 (800)
T ss_pred HHHHHHHHHHHHHHhCe
Confidence 23455667788888887
No 100
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=75.25 E-value=2 Score=43.49 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=43.0
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-ccce--ecC-----CCCHHHH-HHHHHHHHHHH
Q 020977 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHA--ITL-----PYDTQQL-SKATRETAAIY 142 (319)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~ilIa-DlhA--~t~-----~~~~~~i-~~~~~~~~~~~ 142 (319)
...++| +|-=|=+.+||||....+ .-++++++ |++|.++.. |.|. ++. ..+++++ ++++..+.+++
T Consensus 35 ~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~ 114 (411)
T TIGR03447 35 PEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDM 114 (411)
T ss_pred CcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344444 455555889999987755 22444443 788876543 3331 111 2355444 55677888888
Q ss_pred HHcCCC
Q 020977 143 LACGID 148 (319)
Q Consensus 143 lA~GlD 148 (319)
.++|+.
T Consensus 115 ~~Lni~ 120 (411)
T TIGR03447 115 EALRVL 120 (411)
T ss_pred HHcCCC
Confidence 999874
No 101
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=74.80 E-value=2.1 Score=47.51 Aligned_cols=60 Identities=28% Similarity=0.413 Sum_probs=33.4
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adlvpvG~DQ~~-hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s 293 (319)
|-+|+...|.||.+ |+... ++...- .++.. +.|..++.. ..+.. +| +|||||. +|
T Consensus 572 yP~D~~~~GkDii~~H~~~~--i~~~~a-~~~~~-------------~~Pk~i~~~--G~vl~--~G-~KMSKSl---GN 627 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY--IFHHVA-IFPEK-------------FWPRGIVVN--GYVML--EG-KKMSKSK---GN 627 (938)
T ss_pred CCceEEEEeeccccchHHHH--HHHHHH-cCCcc-------------ccCcEEEEe--ceEEe--CC-ccccCcC---CC
Confidence 45799999999976 55544 222111 11111 124443321 23322 66 8999998 67
Q ss_pred eeecC
Q 020977 294 RINLL 298 (319)
Q Consensus 294 ~I~L~ 298 (319)
.|.+.
T Consensus 628 vI~p~ 632 (938)
T TIGR00395 628 VLTLE 632 (938)
T ss_pred CCCHH
Confidence 77654
No 102
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=74.77 E-value=2.9 Score=45.55 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=32.9
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P-~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s 293 (319)
+-+|+...|.||.... +.+-++...-. +|. .| ..++. + .++... +| +|||||. +|
T Consensus 485 ~P~d~~~~G~Di~~~w-~~~~l~~~~~~-~~~---------------~Pf~~v~~-h-g~v~~~-~G-~KMSKS~---GN 540 (800)
T PRK13208 485 FPMDLRPQGHDIIRTW-LFYTILRAYLL-TGK---------------LPWKNIMI-S-GMVLDP-DG-KKMSKSK---GN 540 (800)
T ss_pred CCceEEEeecchhhhH-HHHHHHHHHHh-cCC---------------CCcceEEE-e-eEEECC-CC-CCCCCCC---CC
Confidence 3589999999998532 23333332221 121 13 22222 1 344443 56 7999998 67
Q ss_pred eeecC
Q 020977 294 RINLL 298 (319)
Q Consensus 294 ~I~L~ 298 (319)
.|.+.
T Consensus 541 ~i~p~ 545 (800)
T PRK13208 541 VVTPE 545 (800)
T ss_pred CCCHH
Confidence 77653
No 103
>PLN02959 aminoacyl-tRNA ligase
Probab=73.45 E-value=2.9 Score=47.22 Aligned_cols=61 Identities=25% Similarity=0.318 Sum_probs=34.1
Q ss_pred ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccc-cCCCCcccccCCCCCCcCCCCCCCCC
Q 020977 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL-IPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 214 ~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l-~~~~~~~l~gL~dg~~KMSKS~p~~~ 292 (319)
.|=+|+...|.||...+- ..-+..... .+|.. +-|..+ .+ ..|. + +| +|||||. +
T Consensus 669 ~yP~Dl~~sG~Dii~~wl-~~~l~~~~a-l~~~~-------------P~p~~v~v~---G~V~-~-~G-~KMSKSk---G 724 (1084)
T PLN02959 669 WYPFDLRVSGKDLIQNHL-TFAIYNHTA-IWAEE-------------HWPRGFRCN---GHLM-L-NS-EKMSKST---G 724 (1084)
T ss_pred hCCCeEEEecccHHHHHH-HHHHHHHHH-hcCCC-------------CCCceEEEc---cEEe-c-CC-cCccccC---C
Confidence 356899999999977653 232222211 12221 124323 33 2333 3 67 8999998 6
Q ss_pred CeeecC
Q 020977 293 SRINLL 298 (319)
Q Consensus 293 s~I~L~ 298 (319)
|.|.+.
T Consensus 725 NvI~p~ 730 (1084)
T PLN02959 725 NFLTLR 730 (1084)
T ss_pred CcCCHH
Confidence 777653
No 104
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=73.44 E-value=5 Score=44.11 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=29.0
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.|++|. -+||.+|+||.+..+.+ +.+++. |+++.+..+ |-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCC
Confidence 45666654 35799999999875532 444444 788877665 55544
No 105
>PLN02286 arginine-tRNA ligase
Probab=73.41 E-value=4.4 Score=42.70 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=43.5
Q ss_pred CEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeec
Q 020977 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 218 dlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L 297 (319)
-|-.+|.||..|+.-...+++.++.... .. -..-+++.. .+|-++ +| +||||.. ++.|.|
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~-~~-----------~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~L 389 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPE-DT-----------YPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVRL 389 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCcc-cc-----------CCceEEEee---ccEECC-CC-CcccCCC---CCeeEH
Confidence 4566899999999999999999984200 00 001223332 456344 66 6999886 789999
Q ss_pred CCCHHHH
Q 020977 298 LDPKDVS 304 (319)
Q Consensus 298 ~Dspe~I 304 (319)
.|==+++
T Consensus 390 ~dlldea 396 (576)
T PLN02286 390 VDLLDEA 396 (576)
T ss_pred HHHHHHH
Confidence 7654443
No 106
>PLN02943 aminoacyl-tRNA ligase
Probab=73.19 E-value=3 Score=46.51 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=35.9
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc--cccCCCCcccccCCCCCCcCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~--~l~~~~~~~l~gL~dg~~KMSKS~p~~~ 292 (319)
|-+|+...|.||. .+=++|-++--... .| +.|- .+.+ ..+... +| +|||||. +
T Consensus 535 yP~dl~~~G~Dii-~fW~a~m~~~~~~~-~~---------------~~Pf~~v~~h---g~v~~~-~G-~KMSKS~---G 589 (958)
T PLN02943 535 YPTTVLETGHDIL-FFWVARMVMMGIEF-TG---------------TVPFSYVYLH---GLIRDS-QG-RKMSKTL---G 589 (958)
T ss_pred CCCeEEEEeehHH-HHHHHHHHHhhhhh-cC---------------CCChheEEEe---ccEECC-CC-CcccCcC---C
Confidence 5579999999998 45666766632221 12 1242 2333 234343 56 8999998 6
Q ss_pred CeeecC
Q 020977 293 SRINLL 298 (319)
Q Consensus 293 s~I~L~ 298 (319)
|.|...
T Consensus 590 N~i~p~ 595 (958)
T PLN02943 590 NVIDPL 595 (958)
T ss_pred CCCCHH
Confidence 777654
No 107
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.80 E-value=4.1 Score=43.04 Aligned_cols=69 Identities=23% Similarity=0.237 Sum_probs=47.2
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020977 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 217 adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P-~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I 295 (319)
--|--+|.||..|+...+-+++..+.. .+ ..+++.. ..++..-+| .||||-. ++.|
T Consensus 336 ~~IyV~gadq~~~~~ql~~~l~~~g~~------------------~~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~v 392 (577)
T COG0018 336 KLIYVLGADQHGHFKQLKAVLELLGYG------------------PDKEVLLHQG-VGLVRGGEG-VKMSTRA---GNVV 392 (577)
T ss_pred EEEEEeCCcchhHHHHHHHHHHHhcCC------------------CccceEEEEE-EeeeECCCC-ccccccC---CceE
Confidence 345679999999999999999998843 12 2222211 223333234 6899997 7899
Q ss_pred ecCCCHHHHHHhh
Q 020977 296 NLLDPKDVSHKFF 308 (319)
Q Consensus 296 ~L~Dspe~I~kKI 308 (319)
.|.|==|++.+|-
T Consensus 393 tl~dllde~~era 405 (577)
T COG0018 393 TLDDLLDEAGERA 405 (577)
T ss_pred EHHHHHHHHHHHh
Confidence 9998877777554
No 108
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=72.67 E-value=2.1 Score=45.39 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=33.1
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020977 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I 295 (319)
.+|+.+.|.||..++-+- -.-+-.-.| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~---wpa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIY---WPIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHH---HHHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 468999999998744421 011110011 3446655532 2232 2 56 8999998 6788
Q ss_pred ecCC
Q 020977 296 NLLD 299 (319)
Q Consensus 296 ~L~D 299 (319)
+..|
T Consensus 309 ~p~d 312 (648)
T PRK12267 309 DPEE 312 (648)
T ss_pred CHHH
Confidence 7643
No 109
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=72.10 E-value=2.7 Score=46.87 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.0
Q ss_pred hccCCCEEEecCcchH
Q 020977 213 LLYQSDFVPVGEDQKQ 228 (319)
Q Consensus 213 l~~~adlvpvG~DQ~~ 228 (319)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 110
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=71.83 E-value=3.2 Score=45.62 Aligned_cols=59 Identities=34% Similarity=0.424 Sum_probs=34.9
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~gL~dg~~KMSKS~p~~~ 292 (319)
+-+|+...|.||...+ ++|-++-... ..| +.| ..+.+ .++... +| +|||||. +
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKS~---G 531 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIH---GLVRDE-QG-RKMSKSL---G 531 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEe---eEEECC-CC-CCCCcCC---C
Confidence 5689999999997664 3444443221 111 124 23333 345443 56 7999998 6
Q ss_pred CeeecC
Q 020977 293 SRINLL 298 (319)
Q Consensus 293 s~I~L~ 298 (319)
|.|.+.
T Consensus 532 N~i~p~ 537 (861)
T TIGR00422 532 NVIDPL 537 (861)
T ss_pred CCCCHH
Confidence 777654
No 111
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=71.40 E-value=2.8 Score=40.80 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=38.6
Q ss_pred CCCceEEE-eeCCCCcchhhhHHHHH-----HHHHHHhccCcEEE--EEeccceecC------CCCHHH-HHHHHHHHHH
Q 020977 76 SVKKRIVS-GVQPTGSIHLGNYLGAI-----KNWIALQNSYETLF--FIVDLHAITL------PYDTQQ-LSKATRETAA 140 (319)
Q Consensus 76 ~~~~~i~t-Gi~PTG~lHLGnylg~i-----~~~~~lQ~g~~~~i--lIaDlhA~t~------~~~~~~-i~~~~~~~~~ 140 (319)
+..+++|+ |--+=...||||+...+ +++++. .|+++.+ =|+|+.--+. ..++.+ .+.++..+.+
T Consensus 6 ~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 6 PGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 34556654 44444779999987654 333222 2777644 5677743332 224544 4556778888
Q ss_pred HHHHcCCCCC
Q 020977 141 IYLACGIDNS 150 (319)
Q Consensus 141 ~~lA~GlDp~ 150 (319)
++.++|+.+.
T Consensus 85 dm~~Lnv~~p 94 (300)
T PF01406_consen 85 DMKALNVLPP 94 (300)
T ss_dssp HHHHTT----
T ss_pred HHHHcCCCCC
Confidence 9999998764
No 112
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=71.10 E-value=4.3 Score=45.39 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=36.6
Q ss_pred ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc--cccCCCCcccccCCCCCCcCCCCCCCC
Q 020977 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 214 ~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~--~l~~~~~~~l~gL~dg~~KMSKS~p~~ 291 (319)
.|-+|+...|.||.. +=.+|-++..... .| ..|- .+++ .++.+- +| +|||||.
T Consensus 536 ~~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---------------~~Pfk~v~~H---G~v~d~-~G-~KMSKSl--- 590 (995)
T PTZ00419 536 FFPTSLLETGSDILF-FWVARMVMMSLHL-TD---------------KLPFKTVFLH---AMVRDS-QG-EKMSKSK--- 590 (995)
T ss_pred cCCCcEEEechhHHh-HHHHHHHHHHHHh-cC---------------CCChHHHhcc---ceEECC-CC-CCcccCC---
Confidence 356899999999876 4555555555431 11 2352 3333 445553 56 7999998
Q ss_pred CCeeec
Q 020977 292 QSRINL 297 (319)
Q Consensus 292 ~s~I~L 297 (319)
+|.|..
T Consensus 591 GNvIdP 596 (995)
T PTZ00419 591 GNVIDP 596 (995)
T ss_pred CCcCCh
Confidence 677743
No 113
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.24 E-value=9.3 Score=40.60 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=56.2
Q ss_pred ceEEEeeCC--CCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 79 KRIVSGVQP--TGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 79 ~~i~tGi~P--TG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~-~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
-.|+|-|-| -|.+||||.--...++=--..-..+-++-=|. | +|+ +-.++-..+.++...+|++|-| |-
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDD---T---NPEkEee~yf~sI~e~V~WLG~~P~k--vT 318 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDD---T---NPEKEEEEYFESIKEMVAWLGFEPYK--VT 318 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCC---C---CcchhhHHHHHHHHHHHHHhCCCcee--ee
Confidence 367888855 59999999853223321111112244444444 2 343 2334444555566678999976 44
Q ss_pred Ecccch-hhhHHHHH-------HhccCCHHHHhchhchH
Q 020977 156 VQSHVR-AHVELMWL-------LSSATPIGWLNKMIQFK 186 (319)
Q Consensus 156 ~QSd~~-~~~el~w~-------L~~~~s~~~L~R~~~~k 186 (319)
..||+. +..+++.. +.|+.+..++++.-.++
T Consensus 319 ysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~ 357 (764)
T KOG1148|consen 319 YSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFN 357 (764)
T ss_pred cchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence 678864 33444433 34888888888544443
No 114
>PLN02843 isoleucyl-tRNA synthetase
Probab=70.09 E-value=3.6 Score=46.03 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred hccCCCEEEecCcchH
Q 020977 213 LLYQSDFVPVGEDQKQ 228 (319)
Q Consensus 213 l~~~adlvpvG~DQ~~ 228 (319)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4566999999999987
No 115
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.41 E-value=4.7 Score=42.62 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=30.5
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccceec
Q 020977 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHAIT 123 (319)
Q Consensus 81 i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~--~ilIaDlhA~t 123 (319)
=|+.--|||+||+||...++ .-+.++-+ |++| .+.|.||=..+
T Consensus 122 E~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~ 170 (577)
T COG0018 122 EYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQI 170 (577)
T ss_pred EEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHH
Confidence 38889999999999997766 22333322 7775 66889985443
No 116
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=69.13 E-value=14 Score=32.97 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=36.6
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccce-ec--CCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccc
Q 020977 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (319)
Q Consensus 85 i~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA-~t--~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~ 160 (319)
||| +|+||.-. +.... +..-+++|.|+.-.. -+ ++.+.++-.+.++. .+...|+|.+++.|.-=.|.
T Consensus 8 F~P---~H~GHl~~-i~~a~--~~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~---~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 8 FQP---FHNGHLAV-VLIAL--EKAKKVIILIGSARTARNIKNPWTSEEREVMIEA---ALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred cCC---CCHHHHHH-HHHHH--HHCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHH---HHhccCCCcceEEEEecCCC
Confidence 555 89999864 33442 232267777765522 11 23344444444333 23345899988777664454
No 117
>PLN02660 pantoate--beta-alanine ligase
Probab=68.43 E-value=18 Score=34.99 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=45.8
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~ 294 (319)
.++|....|+--.|-+.+-|.+.+.+|. |.-++.. +.+-. .|| -=||+-+
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~~--------------------~v~I~~~--ptvRe-~dG-LA~SSRN------ 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLDF--------------------DIEVVGS--PIVRE-ADG-LAMSSRN------ 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcCC--------------------CceEEee--CceEC-CCC-Ceecccc------
Confidence 3899999999999999999999999882 3333321 23333 366 4777663
Q ss_pred eecCCCHHHHHHhhhcc
Q 020977 295 INLLDPKDVSHKFFRRF 311 (319)
Q Consensus 295 I~L~Dspe~I~kKI~~A 311 (319)
.+|.++..+....|-++
T Consensus 195 ~yLs~~eR~~A~~l~~~ 211 (284)
T PLN02660 195 VRLSAEEREKALSISRS 211 (284)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 56776666666555443
No 118
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=67.72 E-value=6.3 Score=38.79 Aligned_cols=71 Identities=27% Similarity=0.169 Sum_probs=41.7
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020977 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~ 296 (319)
.-|-.+|.||..|+.-...+++.++..-.. ....+-.. .++ -+.||..|||+.. ++.|.
T Consensus 240 ~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~----------------~~~~H~~~-g~v-l~~~gk~~mstR~---G~~i~ 298 (354)
T PF00750_consen 240 KIIYVVGADQKGHFKQLFAILEALGYDPEA----------------VKLQHVSF-GVV-LLKDGKVKMSTRK---GNVIT 298 (354)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT-HHHH----------------CTEEEEEE--EE-EETTBEESS-TTT---TSSTB
T ss_pred cEEEEecCchhhHHHHHHHHHHHhCCCCCC----------------CEEEEEEE-EEE-EcCCCCccccCCC---CCceE
Confidence 445779999999999999999999842000 11111111 122 2236623899997 68898
Q ss_pred cCCCHHHHHHhh
Q 020977 297 LLDPKDVSHKFF 308 (319)
Q Consensus 297 L~Dspe~I~kKI 308 (319)
|.|==++..++.
T Consensus 299 l~dllde~~~~a 310 (354)
T PF00750_consen 299 LDDLLDEAVERA 310 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 865444443333
No 119
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=66.94 E-value=3.6 Score=42.60 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=31.8
Q ss_pred CEEEecCcchHHHH-HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020977 218 DFVPVGEDQKQHLE-LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 218 dlvpvG~DQ~~hle-LaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~ 296 (319)
++...|.|+..++. +---+..-.+. .++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~----------------~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGE----------------PLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCC----------------CCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 48888999976443 22222222110 13456555542 3342 3 66 7999998 67775
Q ss_pred cC
Q 020977 297 LL 298 (319)
Q Consensus 297 L~ 298 (319)
+.
T Consensus 345 p~ 346 (556)
T PRK12268 345 VD 346 (556)
T ss_pred HH
Confidence 43
No 120
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=65.08 E-value=6.3 Score=41.27 Aligned_cols=42 Identities=21% Similarity=0.467 Sum_probs=29.8
Q ss_pred ceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccc
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLH 120 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~--~ilIaDlh 120 (319)
..=|++--|+|++|+||..+++ .-+.++.+ |++| .+.|.||=
T Consensus 115 ~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 115 IIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWG 162 (566)
T ss_pred EEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchH
Confidence 3457888999999999987766 23444443 6765 57888873
No 121
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=65.08 E-value=5.7 Score=40.92 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=31.6
Q ss_pred EEEecCcchHHHHHHH-HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeec
Q 020977 219 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 219 lvpvG~DQ~~hleLaR-dia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L 297 (319)
+.+.|.|....+-+-- -+..-.+ ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~------------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLG------------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCC------------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8899999998643321 1111111 2335555432 2332 3 55 7999998 688865
Q ss_pred CC
Q 020977 298 LD 299 (319)
Q Consensus 298 ~D 299 (319)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 43
No 122
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=64.90 E-value=4.5 Score=45.22 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.4
Q ss_pred ccCCCEEEecCcchH
Q 020977 214 LYQSDFVPVGEDQKQ 228 (319)
Q Consensus 214 ~~~adlvpvG~DQ~~ 228 (319)
.+-+|+...|.||..
T Consensus 543 ~~Pad~~~~G~Di~r 557 (975)
T PRK06039 543 HFPADFIVEGIDQTR 557 (975)
T ss_pred cCCceEEEechhhHh
Confidence 356899999999975
No 123
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.61 E-value=4.2 Score=44.83 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=26.8
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccceec
Q 020977 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAIT 123 (319)
Q Consensus 87 PTG~lHLGnylg~i--~~~~~lQ~--g~~~~ilIaDlhA~t 123 (319)
+||.+|+||.+... .-++++++ |++++++-+=.||=+
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGI 84 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCc
Confidence 48999999986532 23444554 899999888777754
No 124
>PLN02381 valyl-tRNA synthetase
Probab=64.20 E-value=6 Score=44.74 Aligned_cols=59 Identities=24% Similarity=0.314 Sum_probs=37.3
Q ss_pred ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc--cccCCCCcccccCCCCCCcCCCCCCCC
Q 020977 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 214 ~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~--~l~~~~~~~l~gL~dg~~KMSKS~p~~ 291 (319)
.|-+|+..-|.||. ++=.+|-++..+.. .|. .|. .+++ .+|-+- +| +|||||.
T Consensus 606 ~~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~~---------------~PFk~v~~h---G~V~D~-~G-~KMSKS~--- 660 (1066)
T PLN02381 606 FYPTSVLETGHDIL-FFWVARMVMMGMQL-GGD---------------VPFRKVYLH---PMIRDA-HG-RKMSKSL--- 660 (1066)
T ss_pred cCCCeeeeecchhh-hhHHHHHHHHHHHh-CCC---------------CchHHheec---ceEECC-CC-CCCCCCC---
Confidence 35699999999998 55566666544431 121 232 3333 456554 57 7999998
Q ss_pred CCeeec
Q 020977 292 QSRINL 297 (319)
Q Consensus 292 ~s~I~L 297 (319)
+|.|..
T Consensus 661 GNvIdP 666 (1066)
T PLN02381 661 GNVIDP 666 (1066)
T ss_pred CCCCCH
Confidence 677754
No 125
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=64.01 E-value=3.9 Score=43.76 Aligned_cols=69 Identities=30% Similarity=0.339 Sum_probs=43.1
Q ss_pred hHHHhhhhhccCCCEEEecCcc-hHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCcc-ccCCCCcccccCCCCCC
Q 020977 205 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLS 282 (319)
Q Consensus 205 P~LQAADIl~~~adlvpvG~DQ-~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~-l~~~~~~~l~gL~dg~~ 282 (319)
...|+.|||-...||--+|.|- -||++ .|+|..--. +|... + ... +++ ..| .+ +| .
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHe--NEiAQseA~-~~~~~-----------~--v~y~~H~---G~L-~i-~G-~ 314 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHD--NELAQSEAY-FDKHQ-----------W--VNYFLHS---GHL-HI-KG-L 314 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcch--hHHHHHHHh-hCCCC-----------C--CcEEEEE---EEE-Ee-cc-c
Confidence 4689999999999999999998 46654 344443221 23211 1 112 332 222 33 56 7
Q ss_pred cCCCCCCCCCCeeecC
Q 020977 283 KMSKSAPSDQSRINLL 298 (319)
Q Consensus 283 KMSKS~p~~~s~I~L~ 298 (319)
|||||. +|.|.+.
T Consensus 315 KMSKSL---GNfItp~ 327 (651)
T PTZ00399 315 KMSKSL---KNFITIR 327 (651)
T ss_pred hhhhcC---CCcccHH
Confidence 999998 6777764
No 126
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=63.54 E-value=8.2 Score=40.50 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=42.3
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020977 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~ 296 (319)
--|-.+|.||..|+.-...+++.+++.... .-+++.. .+| .+ +| +||||.. ++.|.
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~---------------~l~h~~~---g~V-~~-~g-~kmStR~---G~~v~ 381 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGYTWVD---------------GMEHVPF---GLI-LK-DG-KKMSTRK---GRVVL 381 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCCCccc---------------CeEEEee---eeE-ec-CC-CCCcCCC---CCeeE
Confidence 446789999999999999999999842100 0112221 234 34 55 5999997 78998
Q ss_pred cCCCHHH
Q 020977 297 LLDPKDV 303 (319)
Q Consensus 297 L~Dspe~ 303 (319)
|.|==|+
T Consensus 382 l~dLlde 388 (562)
T PRK12451 382 LEEVLEE 388 (562)
T ss_pred HHHHHHH
Confidence 8764444
No 127
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=62.17 E-value=18 Score=37.42 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=43.5
Q ss_pred CceEEEeeCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc-----------ceecC-----CCCHH-HHH
Q 020977 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL-----------HAITL-----PYDTQ-QLS 132 (319)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGnylg~i--~~~~~lQ~--g~~~~i--lIaDl-----------hA~t~-----~~~~~-~i~ 132 (319)
.+++|+ ..|| ..+||||....+ --++++.+ |++|.+ =|+|+ -.++. ..++. -.+
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 455554 4666 569999987754 11223322 788866 35666 22222 12443 345
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 020977 133 KATRETAAIYLACGIDNS 150 (319)
Q Consensus 133 ~~~~~~~~~~lA~GlDp~ 150 (319)
+++..+.+++.++|+.++
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 567788889999999765
No 128
>PLN02563 aminoacyl-tRNA ligase
Probab=61.65 E-value=5.9 Score=44.32 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=22.4
Q ss_pred ccCCCEEEecCcc-hHHHHHHHHHHHHhh
Q 020977 214 LYQSDFVPVGEDQ-KQHLELTRELAERVN 241 (319)
Q Consensus 214 ~~~adlvpvG~DQ-~~hleLaRdia~r~n 241 (319)
.+-+|+..+|.|| .-|+..+|-....+.
T Consensus 614 w~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 614 WMPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred cCCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 4569999999999 578888887776654
No 129
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=61.49 E-value=5.6 Score=41.21 Aligned_cols=73 Identities=23% Similarity=0.092 Sum_probs=41.4
Q ss_pred ccccchHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 020977 200 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (319)
Q Consensus 200 g~l~YP~LQAADIl~~~adlvpvG~DQ~-~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~ 278 (319)
|.-+=..-|+...|--.-||.-+|.|-. ||+|- ++|..... +|.. .+...++. .+| ..
T Consensus 217 GWHIECsaMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs~a~-~g~~--------------~~~~w~h~--g~l-~~- 275 (490)
T PRK14536 217 GWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQCEAA-TGKP--------------WVRYWLHH--EFL-LM- 275 (490)
T ss_pred ChHHHHHHHHHHHcCCceeEEeccccCCCcchhh--HHHHHHHh-cCCC--------------cceEEEEc--CEE-ee-
Confidence 3333344556666655679999999965 66663 44444321 2321 13333321 122 33
Q ss_pred CCCCcCCCCCCCCCCeeec
Q 020977 279 DGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L 297 (319)
+| +|||||. +|.|.+
T Consensus 276 ~g-~KMSKSl---GN~itl 290 (490)
T PRK14536 276 NK-GKMSKSA---GQFLTL 290 (490)
T ss_pred cC-ccccccC---CCcccH
Confidence 56 7999998 688877
No 130
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=61.44 E-value=53 Score=35.68 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=46.0
Q ss_pred CCCCCCceEEEeeCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccce--ecC-----CCCHHHH-HHHHHH
Q 020977 73 SSSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHA--ITL-----PYDTQQL-SKATRE 137 (319)
Q Consensus 73 ~~~~~~~~i~tGi~PT--G~lHLGnylg~i--~~~~~lQ~--g~~~~ilI-aDlhA--~t~-----~~~~~~i-~~~~~~ 137 (319)
+..+...++|+ ..|| ..+||||....+ --+.++.+ |++|.+.. .|.|. ++. ..++.++ +.++..
T Consensus 243 P~~~~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~ 321 (699)
T PRK14535 243 PIDPENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQA 321 (699)
T ss_pred cCCCCceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33345566664 4666 779999987754 12333332 78886654 23321 111 2255444 556778
Q ss_pred HHHHHHHcCCCCCC
Q 020977 138 TAAIYLACGIDNSK 151 (319)
Q Consensus 138 ~~~~~lA~GlDp~k 151 (319)
+.+++.++|+.+..
T Consensus 322 F~~d~~~LnI~~p~ 335 (699)
T PRK14535 322 MHEDADALGVLRPD 335 (699)
T ss_pred HHHHHHHcCCCCCc
Confidence 88899999997653
No 131
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=61.43 E-value=7.3 Score=40.85 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=28.4
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecc
Q 020977 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDL 119 (319)
Q Consensus 81 i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~--~ilIaDl 119 (319)
=|+.--|+|++|+||...++ .-+.++-+ |++| ...|.||
T Consensus 118 E~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~ 162 (562)
T PRK12451 118 DYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDW 162 (562)
T ss_pred EecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCc
Confidence 38888999999999987765 23334333 7776 6688888
No 132
>PLN02882 aminoacyl-tRNA ligase
Probab=61.37 E-value=7.9 Score=44.18 Aligned_cols=59 Identities=29% Similarity=0.376 Sum_probs=33.3
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~ 294 (319)
+-+|+..-|.||.... +.+-++-... .+|.. .|..++. + ..+.. .+| +|||||. +|.
T Consensus 566 ~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~~~--------------pfk~Viv-h-G~vld-e~G-~KMSKSl---GNv 622 (1159)
T PLN02882 566 FPADFVAEGLDQTRGW-FYTLMVLSTA-LFDKP--------------AFKNLIC-N-GLVLA-EDG-KKMSKSL---KNY 622 (1159)
T ss_pred CCceEEEEecchhhhH-HHHHHHHHHH-hcCCC--------------CcceeEE-c-cEEEC-CCC-CCcccCC---CCC
Confidence 4499999999998864 4444433322 12321 2333332 1 23322 156 8999998 677
Q ss_pred ee
Q 020977 295 IN 296 (319)
Q Consensus 295 I~ 296 (319)
|.
T Consensus 623 Id 624 (1159)
T PLN02882 623 PD 624 (1159)
T ss_pred CC
Confidence 64
No 133
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=61.02 E-value=5.2 Score=45.14 Aligned_cols=45 Identities=33% Similarity=0.391 Sum_probs=29.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.|+.|. -+||.+|+||.++.+.+ +.+++. |+++.+.-+ |-|++
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Gl 99 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGI 99 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccch
Confidence 45666665 36799999999876532 445554 888877554 55544
No 134
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=60.79 E-value=10 Score=40.06 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=26.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceec
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAIT 123 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t 123 (319)
++.+..|. -+||.+|+||.+..+.+ +++++. |+++.+.. -|-|.+-
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glp 75 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLP 75 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcc
Confidence 45555554 35799999999886633 444444 78886644 5777663
No 135
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=60.06 E-value=5.3 Score=44.04 Aligned_cols=44 Identities=32% Similarity=0.439 Sum_probs=27.4
Q ss_pred ceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020977 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
+.+.+|. -+||.+|+||.+..+.+ +.+++. |+++.+.- .|-|++
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi 87 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGI 87 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccch
Confidence 4444433 35799999999876532 444443 78886655 455555
No 136
>PLN02946 cysteine-tRNA ligase
Probab=60.05 E-value=4.7 Score=42.46 Aligned_cols=73 Identities=19% Similarity=-0.002 Sum_probs=43.3
Q ss_pred ccccchHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 020977 200 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (319)
Q Consensus 200 g~l~YP~LQAADIl~~~adlvpvG~DQ~-~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~ 278 (319)
|.-+=..-|+...|-..-||--||.|-. ||+|--+-..+-. +|.. +. ..-+++ .+|. +
T Consensus 261 GWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~---~g~~------------~a-~yW~H~---G~v~-~- 319 (557)
T PLN02946 261 GWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA---CCDS------------NI-SYWIHN---GFVT-V- 319 (557)
T ss_pred cHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHH---hCCC------------CC-ceeeEe---eEEE-e-
Confidence 3333456788888888899999999964 6776433333222 1211 10 111333 3443 4
Q ss_pred CCCCcCCCCCCCCCCeeec
Q 020977 279 DGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L 297 (319)
+| +|||||. +|.|.+
T Consensus 320 ~G-~KMSKSl---GN~itl 334 (557)
T PLN02946 320 DS-EKMSKSL---GNFFTI 334 (557)
T ss_pred CC-CCcCCcC---CCcCCH
Confidence 67 7999997 577766
No 137
>PLN02286 arginine-tRNA ligase
Probab=59.59 E-value=6.7 Score=41.33 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=28.0
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccc
Q 020977 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLH 120 (319)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~--~ilIaDlh 120 (319)
|+.--|||+||+||...++ .-+.++-+ |++| ...|.||=
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G 167 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWG 167 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchH
Confidence 8899999999999986655 22333333 7775 66888883
No 138
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.12 E-value=7.8 Score=42.60 Aligned_cols=66 Identities=24% Similarity=0.107 Sum_probs=35.2
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCcc-ccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~-l~~~~~~~l~gL~dg~~KMSKS~p~~~s 293 (319)
|=.|+-.+|.|+..++.|= -||+++.=. +.+.-...+|.. |++. .+|.+- +| +|||||. +|
T Consensus 525 ~PVD~yigG~ehavlHLly----~rF~Hkal~-------d~g~~p~~epf~~L~~q--GmVl~~-~g-~KMSKSK---gN 586 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLY----FRFFHKALF-------DEGLVPKDEPFKKLITQ--GMVLGE-EG-EKMSKSK---GN 586 (814)
T ss_pred cChheeecchhHHHHHHHH----HHHHHHHhc-------ccCcCCCccchhhhhcc--ceEEec-CC-Ccccccc---CC
Confidence 3489999999998765532 235544210 000111222322 4432 345443 45 6999998 57
Q ss_pred eeecC
Q 020977 294 RINLL 298 (319)
Q Consensus 294 ~I~L~ 298 (319)
.|.+.
T Consensus 587 ~v~p~ 591 (814)
T COG0495 587 VVDPE 591 (814)
T ss_pred CCCHH
Confidence 77543
No 139
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=59.07 E-value=44 Score=28.08 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=49.4
Q ss_pred EEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEccc
Q 020977 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 81 i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
-.+-+.=||++..-|.+-+ |.+|.|-++++++-..==. .......+++.....+.+...|++|+++.+++=|-
T Consensus 30 riIrvpC~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 30 RIIRVPCSGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EEEEccCCCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 3445556788887766433 5678888888766522111 11235677777788888889999999999887665
No 140
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.76 E-value=6.3 Score=42.43 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=47.6
Q ss_pred CCCCCceEEEee-CCCCcchhhhHHHH-H-HHHHHHhc--cCcEEEEEeccceecCCC---------CH-HHHHHHHHHH
Q 020977 74 SSSVKKRIVSGV-QPTGSIHLGNYLGA-I-KNWIALQN--SYETLFFIVDLHAITLPY---------DT-QQLSKATRET 138 (319)
Q Consensus 74 ~~~~~~~i~tGi-~PTG~lHLGnylg~-i-~~~~~lQ~--g~~~~ilIaDlhA~t~~~---------~~-~~i~~~~~~~ 138 (319)
....+.+|++=| -|||.+|+||...- | .-..++|+ |++|+=-+ .|.|+=.|. +| .-..+|+..+
T Consensus 54 d~sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPM-GWDaFGLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 54 DKSKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPM-GWDAFGLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred ccCCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCC-cccccCCchhhHHHhcCCCchhhhHHHHHHH
Confidence 333455888888 59999999996431 1 33445655 77775443 344443321 22 3355677778
Q ss_pred HHHHHHcCC--CCCC
Q 020977 139 AAIYLACGI--DNSK 151 (319)
Q Consensus 139 ~~~~lA~Gl--Dp~k 151 (319)
..++..+|+ |.|+
T Consensus 133 k~Ql~~lg~~FDWdr 147 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDR 147 (876)
T ss_pred HHHHHHcCccccccc
Confidence 888888875 5554
No 141
>PLN02381 valyl-tRNA synthetase
Probab=57.91 E-value=6.7 Score=44.34 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=29.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.|.+|. -+||.+|+||.+..+.+ +.+++. |+++.+..+ |-|++
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 35666665 36799999999875532 444444 788877665 44444
No 142
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=57.74 E-value=7.3 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=19.6
Q ss_pred cCCCEEEecCcc-hHHHHHHHHHHHH
Q 020977 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (319)
Q Consensus 215 ~~adlvpvG~DQ-~~hleLaRdia~r 239 (319)
+-+|+..+|.|| .-|+-.+|-....
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~ 544 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKF 544 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHH
Confidence 469999999999 6777777876533
No 143
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=56.16 E-value=57 Score=28.45 Aligned_cols=67 Identities=25% Similarity=0.250 Sum_probs=32.7
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCcEEEEEe-ccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccc
Q 020977 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIV-DLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (319)
Q Consensus 85 i~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIa-DlhA~t~--~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~ 160 (319)
|+| +|+||.-. ++...+. .-+++++|. +...... +.+.++-.+..+ +.+...|+|-+++.++-..|.
T Consensus 8 FdP---~H~GHl~~-i~~a~~~--~d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~---~~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILEE--VDELIIGIGSAQESHTLENPFTAGERVLMIR---RALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred cCC---CCHHHHHH-HHHHHHH--CCEEEEEecCCCCCCCCCCCCCHHHHHHHHH---HHHHhcCCCcCeEEEEecCCC
Confidence 566 99999854 3444322 223555563 3333221 333332222222 222333666777777666554
No 144
>PLN02224 methionine-tRNA ligase
Probab=55.56 E-value=9.3 Score=40.71 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=34.8
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~ 294 (319)
...|+..+|.|-.+++.+-= -|--+.. | ++.|..++.. ..+ .+ +| +|||||. ++.
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~~--g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~ 374 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMSA--G--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNT 374 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHHC--C--------------CCCCcEEEec--ccE-ec-CC-ccccccC---Ccc
Confidence 35688999999988643322 1111110 1 3457666542 223 33 67 7999998 688
Q ss_pred eecC
Q 020977 295 INLL 298 (319)
Q Consensus 295 I~L~ 298 (319)
|.+.
T Consensus 375 i~p~ 378 (616)
T PLN02224 375 LEPF 378 (616)
T ss_pred CCHH
Confidence 8654
No 145
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=55.30 E-value=7.7 Score=43.36 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=29.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.+..|. -++|.+|+||.+..+.+ +++++. |+++.+..+ |-|.+
T Consensus 55 ~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 55 KFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 35555565 25699999999886643 445554 788766543 66655
No 146
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=53.72 E-value=8.1 Score=42.93 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=44.0
Q ss_pred ceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-ccceecC-------------CCCHHHHHHHH----
Q 020977 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------------PYDTQQLSKAT---- 135 (319)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~t~-------------~~~~~~i~~~~---- 135 (319)
+.+..|. -++|.+||||.+..+.+ +.+++. |+++.+..+ |-|.+-. ..+++++++.+
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 4555554 25799999999876633 555554 788766554 5554421 11344443333
Q ss_pred ----HHHHHHHHHcCC--CCCC
Q 020977 136 ----RETAAIYLACGI--DNSK 151 (319)
Q Consensus 136 ----~~~~~~~lA~Gl--Dp~k 151 (319)
..+..++..+|+ |.++
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCC
Confidence 345667788898 7775
No 147
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=52.35 E-value=8.8 Score=42.17 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=30.5
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020977 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
.++.++.|. -|+|.+|+||.+..+.+ +.+++. |+++.+..+ |-|.+
T Consensus 36 ~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 36 PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 356777777 24599999999876533 445554 788866554 55554
No 148
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=52.16 E-value=11 Score=40.42 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=19.1
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020977 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 260 ~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~ 298 (319)
++.|..++.. ..+. + +| +|||||. +|.|...
T Consensus 311 ~~lP~~v~~h--g~v~-~-~G-~KMSKS~---GNvV~p~ 341 (673)
T PRK00133 311 YRLPTNVFAH--GFLT-V-EG-AKMSKSR---GTFIWAR 341 (673)
T ss_pred CCCCCEEeee--ccEE-e-cC-CcccccC---CcccCHH
Confidence 3457665542 3342 3 66 7999998 6777653
No 149
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=51.89 E-value=81 Score=32.65 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=43.1
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc-cCcEEEEE--eccceecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCCC
Q 020977 87 PTGSIHLGNYLGAI--KNWIALQN-SYETLFFI--VDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 87 PTG~lHLGnylg~i--~~~~~lQ~-g~~~~ilI--aDlhA~t~-------~~~~-~~i~~~~~~~~~~~lA~GlDp~k 151 (319)
+-..+||||....+ ..+.++|. ..+.+|+. .|-|.+-. ..+| +...++..++...+.+.|+.-++
T Consensus 50 vNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~ 127 (578)
T KOG0436|consen 50 VNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTK 127 (578)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhh
Confidence 45668999976655 44666776 23444443 68887742 2344 55566778888889999997653
No 150
>PLN02943 aminoacyl-tRNA ligase
Probab=50.08 E-value=19 Score=40.36 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=28.5
Q ss_pred ceEEEe-eCCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020977 79 KRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 79 ~~i~tG-i~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
+.+..| =-+||.+|+||.+..+.+ +.+++. |+++.+.. .|-|++
T Consensus 90 f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 139 (958)
T PLN02943 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGI 139 (958)
T ss_pred EEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccc
Confidence 555555 456899999999875522 334443 88887755 455554
No 151
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=49.54 E-value=79 Score=32.16 Aligned_cols=69 Identities=26% Similarity=0.263 Sum_probs=40.4
Q ss_pred hHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 020977 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (319)
Q Consensus 205 P~LQAADIl~~~adlvpvG~DQ~-~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~K 283 (319)
..-|+..+|--.-|+.-+|.|-. +|+|- ++|...-. +|... -+...++. . .... +| +|
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A~-~g~~~-------------~~~~w~H~--g-~l~~-~G-~K 288 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEAA-TGVRR-------------MARHYVHA--G-MIGL-DG-EK 288 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccchHh--HHHHHHHh-cCCCC-------------cceEEEEC--C-EECc-CC-CC
Confidence 45677777777789999999965 56553 44443221 23211 13333331 2 2233 66 79
Q ss_pred CCCCCCCCCCeeec
Q 020977 284 MSKSAPSDQSRINL 297 (319)
Q Consensus 284 MSKS~p~~~s~I~L 297 (319)
||||. +|.|.+
T Consensus 289 MSKSl---GN~i~~ 299 (411)
T TIGR03447 289 MSKSL---GNLVFV 299 (411)
T ss_pred ccCcC---CCCCCH
Confidence 99998 677766
No 152
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=47.93 E-value=13 Score=40.71 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=19.5
Q ss_pred cCCCEEEecCcc-hHHHHHHHHHHHH
Q 020977 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (319)
Q Consensus 215 ~~adlvpvG~DQ-~~hleLaRdia~r 239 (319)
|-+|+...|.|| .-|+-.+|-....
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~ 547 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKV 547 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6778888855533
No 153
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=47.61 E-value=9 Score=42.68 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=26.7
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.+..|. -++|.+|+||.++.+.+ +.++|. |+++.+..+ |.|.+
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~ 76 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGT 76 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCC
Confidence 34444443 24699999999875532 445554 788766442 44433
No 154
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=47.59 E-value=8.1 Score=38.04 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=25.9
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecccee
Q 020977 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHAI 122 (319)
Q Consensus 81 i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~--~ilIaDlhA~ 122 (319)
=|+.--|+|++|+||...++ .-+.++-+ |++| ...|.||=..
T Consensus 25 E~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q 72 (354)
T PF00750_consen 25 EFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQ 72 (354)
T ss_dssp EE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHH
T ss_pred EecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHH
Confidence 37888999999999987655 22333333 6765 6688998443
No 155
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.82 E-value=28 Score=38.93 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=17.2
Q ss_pred ccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020977 273 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 273 ~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
++..- +| +|||||. +|.| +|++|-+|
T Consensus 594 fvlDe-~G-rKMSKSl---GN~v----~P~~V~~~ 619 (933)
T COG0060 594 FVLDE-KG-RKMSKSL---GNVV----DPQDVIDK 619 (933)
T ss_pred cEECC-CC-CCccccC---CCcC----CHHHHHHh
Confidence 44443 56 8999998 6776 45666555
No 156
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=46.57 E-value=53 Score=31.72 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=25.4
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhh
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n 241 (319)
.++|....|+--.|-+.+-|.+.+.+|
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~ 168 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF 168 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC
Confidence 389999999999999999999999988
No 157
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.95 E-value=8.3 Score=39.71 Aligned_cols=71 Identities=27% Similarity=0.206 Sum_probs=45.9
Q ss_pred hHHHhhhhhccCCCEEEecCc-chHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 020977 205 PVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (319)
Q Consensus 205 P~LQAADIl~~~adlvpvG~D-Q~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~K 283 (319)
...|+.++|--.-||--||.| +-||+| .|+|+.--. +|.+.| .-.-+++ .+|+ . +| +|
T Consensus 210 CSaM~~~~LG~~~DIHgGG~DLiFPHHE--NEiAQsea~-~g~~~~------------a~yWmH~---G~l~-i-~g-eK 268 (464)
T COG0215 210 CSAMSTKYLGETFDIHGGGSDLIFPHHE--NEIAQSEAA-TGVKPF------------AKYWMHN---GFLN-I-DG-EK 268 (464)
T ss_pred HHHHHHHHhCCCcceecCcccccCCCcc--cHHHHHHhh-hCCCcc------------eeEeEEc---ceee-e-cC-cC
Confidence 467889999889999999999 568988 455555332 232110 0112343 2332 2 67 89
Q ss_pred CCCCCCCCCCeeecCC
Q 020977 284 MSKSAPSDQSRINLLD 299 (319)
Q Consensus 284 MSKS~p~~~s~I~L~D 299 (319)
||||. +|-|.+.|
T Consensus 269 MSKSL---GNfiti~d 281 (464)
T COG0215 269 MSKSL---GNFITVRD 281 (464)
T ss_pred ccccc---CCeeEHHH
Confidence 99998 68888765
No 158
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=43.37 E-value=14 Score=38.37 Aligned_cols=66 Identities=21% Similarity=0.102 Sum_probs=37.0
Q ss_pred HhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 020977 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (319)
Q Consensus 208 QAADIl~~~adlvpvG~DQ~-~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSK 286 (319)
|+...|--.-||..+|.|-. ||+|-=+-.+.-.. |. +.+...++. .++ -+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~---g~--------------~~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYL---NK--------------KWCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchhHHHHHhhhc---CC--------------CcceEEEEe--cEE-Ee-cC-ceecc
Confidence 44444444579999999976 46664333333321 21 113333321 222 23 56 79999
Q ss_pred CCCCCCCeeecC
Q 020977 287 SAPSDQSRINLL 298 (319)
Q Consensus 287 S~p~~~s~I~L~ 298 (319)
|. +|.|.+.
T Consensus 283 Sl---GN~i~l~ 291 (481)
T PRK14534 283 SN---NNFITIK 291 (481)
T ss_pred cC---CCcccHH
Confidence 98 6788773
No 159
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=42.49 E-value=4.7 Score=40.32 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=29.1
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020977 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 219 lvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~ 298 (319)
+...|.|-..++.+-=-.. -+.. | ++.|..++.. ..+. + +| +|||||. ++.|+..
T Consensus 285 v~~iGkDi~~fH~i~~pa~-l~a~--~--------------~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~~ 339 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAM-LLAA--G--------------LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWPD 339 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHH-HHHC--T--------------B---SEEEEE----EE-E-TT-CCEETTT---TESSBHH
T ss_pred EEEEccchhHHHHHHhHHH-Hhcc--c--------------CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCHH
Confidence 6788888876655432111 0010 1 4567776642 2232 3 67 7999998 6788653
No 160
>PLN02610 probable methionyl-tRNA synthetase
Probab=41.65 E-value=9.9 Score=41.74 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=31.5
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020977 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 219 lvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~ 298 (319)
+.++|.|-..++-+-==.. =.--| ..++.|..++.. ..+ .+ +| +|||||. +|.|+..
T Consensus 304 ~hfiGKDi~~fH~i~wPa~---L~a~g------------~~~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPST---LLGTG------------ENWTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred EEEEeeecchhHHHHHHHH---HHhCC------------CCcCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCHH
Confidence 6888888777664321111 00011 124567766642 222 22 67 7999998 6777654
No 161
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=41.55 E-value=25 Score=40.50 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=19.8
Q ss_pred cccccchHHHhhhhh--ccCCCEEEecCcchHHH
Q 020977 199 VALLTYPVLMASDIL--LYQSDFVPVGEDQKQHL 230 (319)
Q Consensus 199 ~g~l~YP~LQAADIl--~~~adlvpvG~DQ~~hl 230 (319)
.+.+-||--...+-+ .+-+|+..=|.||....
T Consensus 654 ~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 654 YAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGW 687 (1205)
T ss_pred HHHhCCCcccchhhHhccCCceEEEEecchhccH
Confidence 455556632112222 35699999999998654
No 162
>PLN02959 aminoacyl-tRNA ligase
Probab=40.89 E-value=14 Score=41.82 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=22.8
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020977 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 87 PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++|.+||||.+..+.+ ..++|. |+++.+.. =|-|.+
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGl 96 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGM 96 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCc
Confidence 3699999999876533 445555 77775543 244433
No 163
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=38.91 E-value=2.1e+02 Score=27.96 Aligned_cols=70 Identities=26% Similarity=0.136 Sum_probs=39.9
Q ss_pred hHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 020977 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (319)
Q Consensus 205 P~LQAADIl~~~adlvpvG~DQ~-~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~K 283 (319)
..-|+...|-..-||--+|.|-. ||+|--+-.++-.. |+.. .-.-+++ .+|. . +| +|
T Consensus 195 Csam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~~-------------a~~W~H~---g~l~-~-~g-~K 252 (300)
T PF01406_consen 195 CSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKPF-------------ANYWMHN---GHLN-V-DG-EK 252 (300)
T ss_dssp HHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-S-------------EEEEEEE-----EE-E-TT-CE
T ss_pred hHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---CchH-------------HHHHHHH---HHHh-h-cC-cc
Confidence 35777888888899999999975 78886555555443 2210 0111333 2232 2 56 79
Q ss_pred CCCCCCCCCCeeecCC
Q 020977 284 MSKSAPSDQSRINLLD 299 (319)
Q Consensus 284 MSKS~p~~~s~I~L~D 299 (319)
||||. +|.|.+.|
T Consensus 253 MSKSl---gN~~~i~d 265 (300)
T PF01406_consen 253 MSKSL---GNFITIRD 265 (300)
T ss_dssp --TTT---T---BHHH
T ss_pred ccccC---CCEEEHHH
Confidence 99998 68888755
No 164
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=38.18 E-value=22 Score=40.93 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=29.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.++.|- -+||.+|+||.+..+.+ +.+++. |+++.+.. -|-|.+
T Consensus 103 ~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 103 AYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred cEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 35667775 35699999999875533 334443 88887654 455655
No 165
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=37.68 E-value=2e+02 Score=31.05 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=42.7
Q ss_pred CCCceEEEeeCCC--CcchhhhHHHHH-----HHHHHHh--ccCcEEEEE--eccceec-C-----CCC-HHH-HHHHHH
Q 020977 76 SVKKRIVSGVQPT--GSIHLGNYLGAI-----KNWIALQ--NSYETLFFI--VDLHAIT-L-----PYD-TQQ-LSKATR 136 (319)
Q Consensus 76 ~~~~~i~tGi~PT--G~lHLGnylg~i-----~~~~~lQ--~g~~~~ilI--aDlhA~t-~-----~~~-~~~-i~~~~~ 136 (319)
+..+++|+ ..|| +.+||||....+ ++| |+ .|++|.++. .|.---+ . ..+ +.+ .+.++.
T Consensus 58 ~~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~--l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~ 134 (651)
T PTZ00399 58 GRQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRI--LEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEK 134 (651)
T ss_pred CCeeEEEE-eCCCccCCcccccchHHHHHHHHHHH--HHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444443 4566 779999976544 334 34 278887654 2221111 1 124 533 455677
Q ss_pred HHHHHHHHcCCCCCC
Q 020977 137 ETAAIYLACGIDNSK 151 (319)
Q Consensus 137 ~~~~~~lA~GlDp~k 151 (319)
.+.+++.++|+.+..
T Consensus 135 ~f~~d~~~Lni~~p~ 149 (651)
T PTZ00399 135 EFFEDMKALNVRPPD 149 (651)
T ss_pred HHHHHHHHcCCCCCc
Confidence 888999999997654
No 166
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=36.38 E-value=22 Score=39.89 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=29.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.++.|. -+||.+|+||.+....+ +.+++. |+++.+..+ |-|.+
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 46667665 35799999999875533 344443 788866554 66655
No 167
>PLN02882 aminoacyl-tRNA ligase
Probab=34.17 E-value=27 Score=39.96 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=29.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.++.|- -+||.+|+||.+..+.+ +.+++. |++|.+.. -|-|.+
T Consensus 39 ~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred CEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 36666664 25699999999875533 444544 78886644 566665
No 168
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.60 E-value=26 Score=36.72 Aligned_cols=32 Identities=34% Similarity=0.139 Sum_probs=25.6
Q ss_pred ccccchHHHhhhhhccCCCEEEecCcch-HHHH
Q 020977 200 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHLE 231 (319)
Q Consensus 200 g~l~YP~LQAADIl~~~adlvpvG~DQ~-~hle 231 (319)
|.=+=..-||+|||-.+-||--||.|=+ ||++
T Consensus 242 GWHIECSaMas~~lG~~lDIH~GG~DL~FPHHe 274 (586)
T KOG2007|consen 242 GWHIECSAMASAILGSQLDIHGGGIDLAFPHHE 274 (586)
T ss_pred CceeeeHHHHHHhhccccceecCcccccCCCcc
Confidence 4444557899999999999999999976 5654
No 169
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=29.96 E-value=2.2e+02 Score=25.23 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=15.5
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEe
Q 020977 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV 117 (319)
Q Consensus 85 i~PTG~lHLGnylg~i~~~~~lQ~g~~-~~ilIa 117 (319)
|+| +|+||... ++...+ .++ ++|+|+
T Consensus 9 F~P---~H~GHl~~-i~~a~~---~~d~v~v~i~ 35 (174)
T PRK01153 9 FQP---FHKGHLEV-IKWILE---EVDELIIGIG 35 (174)
T ss_pred cCC---CCHHHHHH-HHHHHH---hCCEEEEEec
Confidence 566 99999864 334322 455 555564
No 170
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.76 E-value=18 Score=40.04 Aligned_cols=19 Identities=42% Similarity=0.410 Sum_probs=13.0
Q ss_pred ccccCCCCCCcCCCCCCCCCCeee
Q 020977 273 RVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 273 ~l~gL~dg~~KMSKS~p~~~s~I~ 296 (319)
++-+= +| +|||||. +|.|.
T Consensus 517 LVrDe-~G-~KMSKS~---GNvID 535 (877)
T COG0525 517 LVRDE-QG-RKMSKSK---GNVID 535 (877)
T ss_pred eEEcC-CC-CCCcccC---CCcCC
Confidence 34443 56 8999998 67663
No 171
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.43 E-value=42 Score=37.37 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCcchhhhHHHHHH--HHHHHhc--cCcEEEEEeccceec
Q 020977 88 TGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLHAIT 123 (319)
Q Consensus 88 TG~lHLGnylg~i~--~~~~lQ~--g~~~~ilIaDlhA~t 123 (319)
||.+||||.++... ...++++ |+++.+.-+=.||=+
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGI 126 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGI 126 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccch
Confidence 79999999987432 2333333 778877777788765
No 172
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=28.93 E-value=1.9e+02 Score=28.25 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=20.4
Q ss_pred ceEEEe-eCCCCcchhhhHHHHHHHHHHHhccCcEEEEEec
Q 020977 79 KRIVSG-VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVD 118 (319)
Q Consensus 79 ~~i~tG-i~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaD 118 (319)
.-+|.| ||| +|+||... ++...+ ..-+++|.++.
T Consensus 8 ~~~~~G~F~P---~H~GHl~~-i~~a~~--~~d~l~v~i~s 42 (340)
T PRK05379 8 YLVFIGRFQP---FHNGHLAV-IREALS--RAKKVIVLIGS 42 (340)
T ss_pred EEEEeeccCC---CCHHHHHH-HHHHHH--HCCEEEEEEcc
Confidence 445555 676 89999864 344432 22257777753
No 173
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=28.52 E-value=2.1e+02 Score=28.76 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=41.9
Q ss_pred CceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecccee--cC-----CCCHHHH-HHHHHHHHHHHH
Q 020977 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAI--TL-----PYDTQQL-SKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~ilI-aDlhA~--t~-----~~~~~~i-~~~~~~~~~~~l 143 (319)
..++| +|-=|=+.+||||..+.+ .-+.++++ |++|.+.. .|.|.- +. ..+++++ +++...+.+++.
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34454 333333889999987755 22333333 78876644 333321 11 2355444 556678889999
Q ss_pred HcCC-CCC
Q 020977 144 ACGI-DNS 150 (319)
Q Consensus 144 A~Gl-Dp~ 150 (319)
++|+ .|+
T Consensus 89 ~Lni~~~~ 96 (384)
T PRK12418 89 ALRVLPPR 96 (384)
T ss_pred HhCCCCCC
Confidence 9997 554
No 174
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=28.46 E-value=19 Score=38.90 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=24.6
Q ss_pred ccchHHHhhhhhccCCCEEEecCcc-hHHHHHHHHHHHH
Q 020977 202 LTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAER 239 (319)
Q Consensus 202 l~YP~LQAADIl~~~adlvpvG~DQ-~~hleLaRdia~r 239 (319)
-+=..-|+...|--.-||--||.|- -||+|- |+|..
T Consensus 432 HIECSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 468 (699)
T PRK14535 432 HIECSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQS 468 (699)
T ss_pred HHHHHHHHHHHcCCcceeECCccccCCCCCcc--HHHHH
Confidence 3334566666666678999999996 478774 55554
No 175
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.15 E-value=46 Score=33.14 Aligned_cols=27 Identities=41% Similarity=0.696 Sum_probs=19.8
Q ss_pred CCcchhhhHHHHHHHHHHHhccCcEEEEEeccc
Q 020977 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120 (319)
Q Consensus 88 TG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlh 120 (319)
.|..||||| |+.++- ...|+|-|+|+.
T Consensus 62 cGD~HLgN~-ga~~~~-----~G~V~f~i~DFD 88 (410)
T COG4320 62 CGDAHLGNF-GAARNS-----KGNVVFKIADFD 88 (410)
T ss_pred ecccccccc-hhhccC-----CCceEEEecccc
Confidence 478999998 553322 457999999974
No 176
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.14 E-value=28 Score=36.79 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=19.0
Q ss_pred cCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020977 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 261 ~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D 299 (319)
+.|..++.. ..+ -+ +| +|||||. ++.|+..|
T Consensus 316 ~lP~~i~ah--g~l-~~-~G-~KmSKSr---G~~V~~~~ 346 (558)
T COG0143 316 PLPTRIFAH--GFL-TL-EG-QKMSKSR---GNVVDPDE 346 (558)
T ss_pred CCCCEEEee--eeE-EE-CC-ccccccC---CcEEeHHH
Confidence 356666542 111 22 66 6999998 68887654
No 177
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=24.58 E-value=4.6e+02 Score=22.59 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=56.0
Q ss_pred eeccCCCCCCCCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEE----EeccceecCCCCHHHHHHHH
Q 020977 60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF----IVDLHAITLPYDTQQLSKAT 135 (319)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~il----IaDlhA~t~~~~~~~i~~~~ 135 (319)
|+-.+++.+.-.--+-|...|| +=+.-||++..-. + +..|++|.|-++. ++|-|=..++. ..+++.
T Consensus 11 csygaaDlag~~rmqyp~~vRi-Irv~CsGrvn~~f----v--l~Al~~GaDGV~v~GC~~geCHy~~GN~---ka~rR~ 80 (132)
T COG1908 11 CSYGAADLAGTSRMQYPPNVRI-IRVMCSGRVNPEF----V--LKALRKGADGVLVAGCKIGECHYISGNY---KAKRRM 80 (132)
T ss_pred ccccchhhhccccccCCCceEE-EEeeccCccCHHH----H--HHHHHcCCCeEEEecccccceeeeccch---HHHHHH
Confidence 4445555555444444444444 3456678876332 2 2337888886554 46666665554 455566
Q ss_pred HHHHHHHHHcCCCCCCcEEEEccc
Q 020977 136 RETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 136 ~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
+...+.+..+||+|+++.++|-|.
T Consensus 81 ~~lke~l~elgie~eRv~~~wiSa 104 (132)
T COG1908 81 ELLKELLKELGIEPERVRVLWISA 104 (132)
T ss_pred HHHHHHHHHhCCCcceEEEEEEeh
Confidence 666677778899999999888775
No 178
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=24.50 E-value=3.5e+02 Score=21.76 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=15.9
Q ss_pred cchhhhHHHHHHHHHHHhccCcEEEEEeccceec
Q 020977 90 SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123 (319)
Q Consensus 90 ~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t 123 (319)
++|.||.-. +....++-+.-.++++.+|-...-
T Consensus 8 P~H~GH~~~-l~~a~~~~~~~~vi~v~~~~~~~k 40 (157)
T PF01467_consen 8 PPHNGHLNL-LREARELFDEDLVIVVPSDNSPHK 40 (157)
T ss_dssp T--HHHHHH-HHHHHHHSSESEEEEEEEEHHCHS
T ss_pred cccHHHHHH-HHHHHHhccccccccccccccccc
Confidence 399999864 444433222112555666665543
Done!